Early Triassic wrinkle structures on land: stressed environments and oases for life

NASA Astrophysics Data System (ADS)

Chu, Daoliang; Tong, Jinnan; Song, Haijun; Benton, Michael J.; Bottjer, David J.; Song, Huyue; Tian, Li

2015-06-01

Wrinkle structures in rocks younger than the Permian-Triassic (P-Tr) extinction have been reported repeatedly in marine strata, but rarely mentioned in rocks recording land. Here, three newly studied terrestrial P-Tr boundary rock succession in North China have yielded diverse wrinkle structures. All of these wrinkles are preserved in barely bioturbated shore-shallow lacustrine siliciclastic deposits of the Liujiagou Formation. Conversely, both the lacustrine siliciclastic deposits of the underlying Sunjiagou Formation and the overlying Heshanggou Formation show rich bioturbation, but no wrinkle structures or other microbial-related structures. The occurrence of terrestrial wrinkle structures in the studied sections reflects abnormal hydrochemical and physical environments, presumably associated with the extinction of terrestrial organisms. Only very rare trace fossils occurred in the aftermath of the P-Tr extinction, but most of them were preserved together with the microbial mats. This suggests that microbial mats acted as potential oases for the surviving aquatic animals, as a source of food and oxygen. The new finds suggests that extreme environmental stresses were prevalent both in the sea and on land through most of the Early Triassic.

Development and application of a conceptual hydrologic model to predict soil salinity within modern Tunisian oases

NASA Astrophysics Data System (ADS)

Askri, Brahim; Bouhlila, Rachida; Job, Jean Olivier

2010-01-01

SummaryIn modern oases situated in the south of Tunisia, secondary salination of irrigated lands is a crucial problem. The visible salt deposits and soil salination processes are the consequence of several factors including the excessive use of saline irrigation water, seepage from earthen canal systems, inefficient irrigation practices and inadequate drainage. Understanding the mechanism of the secondary salination is of interest in order to maintain existing oases, and thus ensure the sustainability of date production in this part of the country. Therefore, a conceptual, daily, semi-distributed hydrologic model (OASIS_MOD) was developed to analyse the impact of irrigation management on the water table fluctuation, soil salinity and drain discharge, and to evaluate measures to control salinity within an oasis ecosystem. The basic processes incorporated in the model are irrigation, infiltration, percolation to the shallow groundwater, soil evaporation, crop transpiration, groundwater flow, capillary rise flux, and drain discharge. OASIS_MOD was tested with data collected in a parcel of farmland situated in the Segdoud oasis, in the south-west of Tunisia. The calibration results showed that groundwater levels were simulated with acceptable accuracy, since the differences between the simulated and measured values are less than 0.22 m. However, the model under-predicted some water table peaks when irrigation occurs due to inconsistencies in the irrigation water data. The validation results showed that deviations between observed and simulated groundwater levels have increased to about 0.5 m due to under-estimation of groundwater inflow from an upstream palm plantation. A long-term simulation scenario revealed that the soil salinity and groundwater level have three types of variability in time: a daily variability due to irrigation practices, seasonal fluctuation due to climatic conditions and annual variability explained by the increase in cultivated areas. The

[Quality of life of people with severe dementia in nursing oases: empirical results and methodological implications].

PubMed

Brandenburg, H

2013-07-01

Nursing oases (NOs) are a variant of segregated care for people with severe dementia in nursing homes. They can be understood as a constant living arrangement in one room for 4-7 persons with a special care concept and environmental design. During the daytime nurses are permanently present. Quality of life (QoL) is the focus because the efficacy of medical and nursing interventions should include measurement of QoL. There is a controversy whether NOs are really different from the traditional caring settings in long-term care. Advocates see NOs as a substantial contribution to improve QoL, especially for people with severe dementia but critics fear a rollback to the era of multibed rooms in nursing homes and emphasize the risk of losing autonomy. This article is differentiated into four parts. Firstly, reasons are given why NOs are an option for a professional and adequate fulfillment of needs for people with severe dementia and a definition of NOs is given. Secondly, selected results of NOs studies in Germany are shown which have mainly documented positive effects. Thirdly, on the background of US American research into Special Care Units methodological questions are discussed. The focus is on designs and the utilization of standardized and non-standardized instruments. In the concluding remarks it is discussed whether QoL is an adequate indicator of a good life for people with severe dementia in long-term care.

Vertebrate paleontological exploration of the Upper Cretaceous succession in the Dakhla and Kharga Oases, Western Desert, Egypt

NASA Astrophysics Data System (ADS)

Sallam, Hesham M.; O'Connor, Patrick M.; Kora, Mahmoud; Sertich, Joseph J. W.; Seiffert, Erik R.; Faris, Mahmoud; Ouda, Khaled; El-Dawoudi, Iman; Saber, Sara; El-Sayed, Sanaa

2016-05-01

The Campanian and Maastrichtian stages are very poorly documented time intervals in Africa's record of terrestrial vertebrate evolution. Upper Cretaceous deposits exposed in southern Egypt, near the Dakhla and Kharga Oases in the Western Desert, preserve abundant vertebrate fossils in nearshore marine environments, but have not yet been the focus of intensive collection and description. Our recent paleontological work in these areas has resulted in the discovery of numerous new vertebrate fossil-bearing localities within the middle Campanian Qusier Formation and the upper Campanian-lower Maastrichtian Duwi Formation. Fossil remains recovered from the Campanian-aged Quseir Formation include sharks, rays, actinopterygian and sarcopterygian fishes, turtles, and rare terrestrial archosaurians, including some of the only dinosaurs known from this interval on continental Africa. The upper Campanian/lower Maastrichtian Duwi Formation preserves sharks, sawfish, actinopterygians, and marine reptiles (mosasaurs and plesiosaurs). Notably absent from these collections are representatives of Mammalia and Avialae, both of which remain effectively undocumented in the Upper Cretaceous rocks of Africa and Arabia. New age constraints on the examined rock units is provided by 23 nannofossil taxa, some of which are reported from the Duwi Formation for the first time. Fossil discoveries from rock units of this age are essential for characterizing the degree of endemism that may have developed as the continent became increasingly tectonically isolated from the rest of Gondwana, not to mention for fully evaluating origin and diversification hypotheses of major modern groups of vertebrates (e.g., crown birds, placental mammals).

Modeling nitrate leaching and optimizing water and nitrogen management under irrigated maize in desert oases in Northwestern China.

PubMed

Hu, Kelin; Li, Yong; Chen, Weiping; Chen, Deli; Wei, Yongping; Edis, Robert; Li, Baoguo; Huang, Yuanfang; Zhang, Yuanpei

2010-01-01

Understanding water and N transport through the soil profile is important for efficient irrigation and nutrient management to minimize nitrate leaching to the groundwater, and to promote agricultural sustainable development in desert oases. In this study, a process-based water and nitrogen management model (WNMM) was used to simulate soil water movement, nitrate transport, and crop growth (maize [Zea mays L.]) under desert oasis conditions in northwestern China. The model was calibrated and validated with a field experiment. The model simulation results showed that about 35% of total water input and 58% of the total N input were leached to <1.8 m depth under traditional management practice. Excessive irrigation and N fertilizer application, high nitrate concentration in the irrigation water, together with the sandy soil texture, resulted in large nitrate leaching. Nitrate leaching was significantly reduced under the improved management practice suggested by farm extension personnel; however, the water and nitrate inputs still far exceeded the crop requirements. More than 1700 scenarios combining various types of irrigation and fertilizer practices were simulated. Quantitative analysis was conducted to obtain the best management practices (BMPs) with simultaneous consideration of crop yield, water use efficiency, fertilizer N use efficiency, and nitrate leaching. The results indicated that the BMPs under the specific desert oasis conditions are to irrigate the maize with 600 mm of water in eight times with a single fertilizer application at a rate of 75 kg N ha(-1).

Microbial biomass and biological activity of soils and soil-like bodies in coastal oases of Antarctica

NASA Astrophysics Data System (ADS)

Nikitin, D. A.; Marfenina, O. E.; Kudinova, A. G.; Lysak, L. V.; Mergelov, N. S.; Dolgikh, A. V.; Lupachev, A. V.

2017-09-01

The method of luminescent microscopy has been applied to study the structure of the microbial biomass of soils and soil-like bodies in East (the Thala Hills and Larsemann Hills oases) and West (Cape Burks, Hobbs coast) Antarctica. According to Soil Taxonomy, the studied soils mainly belong to the subgroups of Aquic Haploturbels, Typic Haploturbels, Typic Haplorthels, and Lithic Haplorthels. The major contribution to their microbial biomass belongs to fungi. The highest fungal biomass (up to 790 μg C/g soil) has been found in the soils with surface organic horizons in the form of thin moss/lichen litters, in which the development of fungal mycelium is most active. A larger part of fungal biomass (70-98%) is represented by spores. For the soils without vegetation cover, the accumulation of bacterial and fungal biomass takes place in the horizons under surface desert pavements. In the upper parts of the soils without vegetation cover and in the organic soil horizons, the major part (>60%) of fungal mycelium contains protective melanin pigments. Among bacteria, the high portion (up to 50%) of small filtering forms is observed. A considerable increase (up to 290.2 ± 27 μg C/g soil) in the fungal biomass owing to the development of yeasts has been shown for gley soils (gleyzems) developing from sapropel sediments under subaquatic conditions and for the algal-bacterial mat on the bottom of the lake (920.7 ± 46 μg C/g soil). The production of carbon dioxide by the soils varies from 0.47 to 2.34 μg C-CO2/(g day). The intensity of nitrogen fixation in the studied samples is generally low: from 0.08 to 55.85 ng C2H4/(g day). The intensity of denitrification varies from 0.09 to 19.28 μg N-N2O/(g day).

ETHNOBOTANICAL SURVEY OF PHOENIX DACTYLIFERA L. POLLEN USED FOR THE TREATMENT OF INFERTILITY PROBLEMS IN ALGERIAN OASES.

PubMed

Selmani, Cherifa; Chabane, Djamila; Bouguedoura, Nadia

2017-01-01

The Phoenix dactylifera L. (date palm) is known for its traditional medicinal properties across the history of native population in Algerian Sahara. There is a large trend of consumption of date palm pollen preparations in many human infertility cases in our country. However, the validity has not been scientifically tested. There has been no direct scientific research on this application. This study was undertaken to identify cultivars with greater potential in the traditional medicine uses. To evaluate the effects of date palm pollen on some sexual behavioural parameters of male adult rats, we tested the role of pollen powder from Deglet Nour cultivar on some male reproductive parameters. An Ethnobotanical survey was conducted in 17 oases in southern Algeria to identify all cultivars with medicinal interest. Local people were interviewed with open questions. A questionnaire and personal interviews for data collection were designed to record important cultivars, parts used and preparations. To determine the active constituents of date palm pollen used in traditional medicine, a phytochemical screening was performed. The effects of oral administration of date palm pollen suspension on male adult rats were investigated on body and testicle weights, serum testosterone level. 131 prominent cultivars were found within 12 cultivars containing various parts with medicinal effects. Some primary and secondary metabolites were detected by phytochemical screening. The pollen increased the weight of the body, testicles and enhanced the serum testosterone level of male rats treated. The present survey has provided the identification and recognition of date palm cultivars used in traditional Saharan medicine. Date palm pollen could improve sexual activities in male infertility cases and may be attempted to derive drugs.

Initial evaluation of the Older Adult Social-Evaluative Situations Questionnaire: a measure of social anxiety in older adults.

PubMed

Gould, Christine E; Gerolimatos, Lindsay A; Ciliberti, Caroline M; Edelstein, Barry A; Smith, Merideth D

2012-12-01

The assessment of social anxiety in late life has been examined in few studies (e.g. Gretarsdottir et al., 2004; Ciliberti et al., 2011). The present study describes the creation and initial psychometric evaluation of a new, content valid measure of social anxiety for older adults, the Older Adult Social-Evaluative Situations Questionnaire (OASES). Psychometric properties of the OASES were evaluated in a community dwelling sample of older adults (N = 137; 70.8% female). Convergent validity was established by examining the relation between the OASES and the Liebowitz Social Anxiety Scale (LSAS), Social Phobia and Anxiety Inventory (SPAI), and Beck Anxiety Inventory (BAI). Discriminant validity was established by examining the relation between the OASES and measures of depression (Geriatric Depression Scale, GDS), perceived health status (Short Form Health Survey, SF-12), and demographic variables. The validity analyses of the OASES were based on a smaller sample with n values ranging from 98 to 137 depending on missing data on each questionnaire. Internal consistency, measured by Cronbach's α, for the OASES total score was 0.96. All items on the OASES were endorsed by participants. Convergent validity was demonstrated by medium to large correlations with the SPAI, LSAS, and BAI. Support for discriminant validity was evidenced by small to medium correlations between the OASES and GDS, SF-12, and demographic variables. Evidence in support of convergent and discriminant validity of the OASES is discussed. Although the results from the present study suggest that this measure may assess anxiety in and avoidance of social situations salient to older adults, future studies are needed to further examine the psychometric properties of the OASES and replicate these results in both clinical and more diverse samples of older adults.

ETHNOBOTANICAL SURVEY OF PHOENIX DACTYLIFERA L. POLLEN USED FOR THE TREATMENT OF INFERTILITY PROBLEMS IN ALGERIAN OASES

PubMed Central

Selmani, Cherifa; Chabane, Djamila; Bouguedoura, Nadia

2017-01-01

Background: The Phoenix dactylifera L. (date palm) is known for its traditional medicinal properties across the history of native population in Algerian Sahara. There is a large trend of consumption of date palm pollen preparations in many human infertility cases in our country. However, the validity has not been scientifically tested. There has been no direct scientific research on this application. This study was undertaken to identify cultivars with greater potential in the traditional medicine uses. To evaluate the effects of date palm pollen on some sexual behavioural parameters of male adult rats, we tested the role of pollen powder from Deglet Nour cultivar on some male reproductive parameters. Materials and Methods: An Ethnobotanical survey was conducted in 17 oases in southern Algeria to identify all cultivars with medicinal interest. Local people were interviewed with open questions. A questionnaire and personal interviews for data collection were designed to record important cultivars, parts used and preparations. To determine the active constituents of date palm pollen used in traditional medicine, a phytochemical screening was performed. The effects of oral administration of date palm pollen suspension on male adult rats were investigated on body and testicle weights, serum testosterone level. Results: 131 prominent cultivars were found within 12 cultivars containing various parts with medicinal effects. Some primary and secondary metabolites were detected by phytochemical screening. The pollen increased the weight of the body, testicles and enhanced the serum testosterone level of male rats treated. Conclusion: The present survey has provided the identification and recognition of date palm cultivars used in traditional Saharan medicine. Date palm pollen could improve sexual activities in male infertility cases and may be attempted to derive drugs. PMID:28480429

The relationship between the experience of stuttering and demographic characteristics of adults who stutter.

PubMed

Freud, Debora; Kichin-Brin, Marina; Ezrati-Vinacour, Ruth; Roziner, Ilan; Amir, Ofer

2017-06-01

This study aims to examine the association between adults' experience of stuttering and their age, gender and marital status, as well as to evaluate the psychometric properties of the Hebrew version of the OASES-A. The Hebrew version of the OASES-A was administered to 91 adults-who-stutter. The validity of the translated version was evaluated using a subset of 43 participants, who also completed three additional instruments: (a) a Perceived Stuttering Severity (PSS) self-rating scale, (b) the Situation Avoidance Behavior Checklist (SABC), (c) the Students Life Satisfaction scale (SLSS). Finally, the correlations between the participants' OASES-A scores and their age, gender and marital status were calculated. A negative correlation was found between the participants' OASES-A impact scores and their age (p<0.01). In addition, married participants exhibited lower OASES-A impact scores compared with unmarried participants (p<0.05). On the other hand, the speakers' gender was not associated with OASES-A impact scores. revealed high internal consistency of the Hebrew OASES-A, and moderate to strong correlations with the additional examined instruments. Finally, results of the Hebrew version of the questionnaire were comparable with those obtained in other languages. Our results indicated that, within our cohort, age and marital status are significantly associated with the personal experience of stuttering, whereas gender is not. In addition, the Hebrew version of the OASES-A is valid and comparable with equivalent versions in other languages. This facilitates the application of the OASES-A in future clinical and research settings. Copyright © 2017 Elsevier Inc. All rights reserved.

Soils of wet valleys in the Larsemann Hills and Vestfold Hills oases (Princess Elizabeth Land, East Antarctica)

NASA Astrophysics Data System (ADS)

Mergelov, N. S.

2014-09-01

The properties and spatial distribution of soils and soil-like bodies in valleys of the coastal Larsemann Hills and Vestfold Hills oases—poorly investigated in terms of the soil areas of East Antarctica—are discussed. In contrast to Dry Valleys—large continental oases of Western Antarctica—the studied territory is characterized by the presence of temporarily waterlogged sites in the valleys. It is argued that the deficit of water rather than the low temperature is the major limiting factor for the development of living organisms and the pedogenesis on loose substrates. The moisture gradients in the surface soil horizons explain the spatial distribution of the different soils and biotic complexes within the studied valleys. Despite the permanent water-logging of the deep suprapermafrost horizons of most of the soils in the valleys, no gley features have been identified in them. The soils of the wet valleys in the Larsemann Hills oasis do not contain carbonates. They have a slightly acid or neutral reaction. The organic carbon and nitrogen contents are mainly controlled by the amount of living and dead biomass rather than by the humic substances proper. The larger part of the biomass is concentrated inside the mineral soil matrix rather than on the soil surface. The stresses caused by surface drying, strong winds, and ultraviolet radiation prevent the development of organisms on the surface of the soil and necessitate the search for shelter within the soil fine earth material (endoedaphic niche) or under the gravelly pavement (hypolithic niche). In the absence of higher plants, humified products of their decomposition, and rainwater that can wash the soil profile and upon the low content of silt and clay particles in the soil material, "classical" soil horizons are not developed. The most distinct (and, often, the only diagnosed) products of pedogenesis in these soils are represented by organomineral films on the surface of mineral particles.

Descriptive Study of Damage Caused by the Rhinoceros Beetle, Oryctes agamemnon, and Its Influence on Date Palm Oases of Rjim Maatoug, Tunisia

PubMed Central

Soltani, Rasmi; lkbel, Chaieb; Habib Ben Hamouda, Med

2008-01-01

Oryctes agamemnon (Burmeister 1847) (Coleoptera, Scarabaeidae) was accidentally introduced in the southwestern oases of Tunisia (Tozeur) around 1980 and spread to the Rjim Maatoug region. In these areas O. agamemnon was specific to date palm trees causing severe damage that can result in potential danger due to collapse of the tree. This study was conducted from April 2004 to March 2006 in 4 sites in the region of Rjim Maatoug. Different levels of palm tree attack were determined, ovioposition sites were identified, and pest damage was described in detail to specify their relative importance and to indicate factors governing palm tree attack. Eggs were individually oviposited in the attacked parts. Dead parts of palm trees were the main target of O. agamemnon including the respiratory roots, tough, trunk bark, dry petiole and the periphery of the crown. The crown itself was not attacked. Feeding by larvae caused significant damage. The biggest danger occurred when heavy attacks of larvae invaded the respiratory roots at the level of the soil, and secondarily on the periphery of the crown, which can result in fungal diseases. Several cases of Deglet Nour date palm tree collapse were caused by this pest in Rjim Maatoug. Attacks on other parts of the tree were without danger for the palm tree. In the absence of pest management, application of a quarantine program combined with field cultivation techniques could help farmers significantly decrease attack of O. agamemnon on palm trees. PMID:20302545

Descriptive study of damage caused by the rhinoceros beetle, Oryctes agamemnon, and its influence on date palm oases of Rjim Maatoug, Tunisia.

PubMed

Soltani, Rasmi; Lkbel, Chaieb; Habib Ben Hamouda, Med

2008-01-01

Oryctes agamemnon (Burmeister 1847) (Coleoptera, Scarabaeidae) was accidentally introduced in the southwestern oases of Tunisia (Tozeur) around 1980 and spread to the Rjim Maatoug region. In these areas O. agamemnon was specific to date palm trees causing severe damage that can result in potential danger due to collapse of the tree. This study was conducted from April 2004 to March 2006 in 4 sites in the region of Rjim Maatoug. Different levels of palm tree attack were determined, ovioposition sites were identified, and pest damage was described in detail to specify their relative importance and to indicate factors governing palm tree attack. Eggs were individually oviposited in the attacked parts. Dead parts of palm trees were the main target of O. agamemnon including the respiratory roots, tough, trunk bark, dry petiole and the periphery of the crown. The crown itself was not attacked. Feeding by larvae caused significant damage. The biggest danger occurred when heavy attacks of larvae invaded the respiratory roots at the level of the soil, and secondarily on the periphery of the crown, which can result in fungal diseases. Several cases of Deglet Nour date palm tree collapse were caused by this pest in Rjim Maatoug. Attacks on other parts of the tree were without danger for the palm tree. In the absence of pest management, application of a quarantine program combined with field cultivation techniques could help farmers significantly decrease attack of O. agamemnon on palm trees.

Issues of affinity: exploring population structure in the Middle and Regional Developments Periods of San Pedro de Atacama, Chile.

PubMed

Torres-Rouff, Christina; Knudson, Kelly J; Hubbe, Mark

2013-11-01

The Middle Period (AD 400-1000) in northern Chile's Atacama oases is characterized by an increase in social complexity and regional interaction, much of which was organized around the power and impact of the Tiwanaku polity. Despite the strong cultural influence of Tiwanaku and numerous other groups evident in interactions with Atacameños, the role of immigration into the oases during this period is unclear. While archaeological and bioarchaeological research in the region has shown no evidence that clearly indicates large groups of foreign immigrants, the contemporary increase in interregional exchange networks connecting the oases to other parts of the Andes suggests residential mobility and the possibility that movement of people both into and out of the oases accompanied these foreign influences. Here, we analyze biodistance through cranial non-metric traits in a skeletal sample from prehistoric San Pedro de Atacama to elucidate the extent of foreign influence in the oases and discuss its implications. We analyzed 715 individuals from the Middle Period (AD 400-1000) and later Regional Developments Period (AD 1000-1450), and found greater phenotypic differences between Middle Period cemeteries than among cemeteries in the subsequent period. We argue that this greater diversity extends beyond the relationship between the oases and the renowned Tiwanaku polity and reflects the role of the oases and its different ayllus as a node and way station for the Middle Period's myriad interregional networks. Copyright © 2013 Wiley Periodicals, Inc.

High frequency peritidal cycles in the lower member of the Late Cretaceous (Turonian, Coniasian-Santonian) El Hefhuf Formation, Bahariya Oases, Western Desert, Egypt

NASA Astrophysics Data System (ADS)

Khalifa, M. A.; Tanner, Lawrence H.

2017-06-01

Carbonate lithofacies of the lower member of the El Hefhuf Formation (Turonian, Coniasian-Santonian) in the Bahariya Oases, Western Desert of Egypt comprise dolostone, burrowed dolostone, cherty dolostone, calcareous dedolostone, dolomitic quartzose lime-mudstone, and caliche. The dolostone and cherty dolostone formed in intertidal to supratidal environments, while dedolostone and caliche were formed during subaerial exposure. The dolomitic quartzose lime-mudstone was deposited in a restricted subtidal environment. Stable isotope analyses of the dolostone lithofacies are consistent with dolomitization by normal marine to evaporatively enriched dolomitizing fluids with only slight mixing of meteoric water. Therefore, dolomitization occurred in the intertidal and supratidal environments immediately following deposition. The dolostone and cherty dolostone lithofacies display pronounced cyclicity at the sub-meter scale, with individual cycles consisting of one (monolithic), two (diad) or at most three (triad) lithofacies. Most of all cycles show evidence of subaerial exposure at the top, such as brecciations, and many cycles are capped by calcareous palaeosol layers (caliche). In the absence of evidence for cycle periods at Milankovitch-scale frequencies, we reject orbital forcing as the cause of the cyclicity and suggest instead autocyclic depositional processes in the peritidal environment as the primary control on cyclicity, possibly modified by eustatic fluctuations at periods longer than the cycles recorded here. The significance of this study is to suggest formation of dolomite cycles due to high-frequency in sea level with intermittent subaerial exposure.

Novel green algal isolates from the Egyptian hyper-arid desert oases: a polyphasic approach with a description of Pharao desertorum gen. et sp. nov. (Chlorophyceae, Chlorophyta).

PubMed

Saber, Abdullah A; Fučíková, Karolina; McManus, Hilary A; Guella, Graziano; Cantonati, Marco

2018-03-30

The biodiversity of terrestrial algae is still grossly understudied, and African deserts in particular are barely touched in this respect. Here, four coccoid green algae from oases in the Western Desert of Egypt were characterized using a combination of morphotaxonomic, ecological and 18S rDNA data, with additional carotenoid and lipid analyses for two of the strains. Three strains were identified as affiliated with known taxa: Mychonastes sp., Asterarcys sp. (first report of this genus from a desert soil), and Stichococcus cf. deasonii. The fourth strain is proposed to represent a new cryptic genus Pharao gen. nov., with the type species P. desertorum sp. nov. The new taxon is sister to the clade of uncharacterized North American desert strains of Radiococcaceae (Chlorophyceae, Chlorophyta). The pigment profile of P. desertorum gen. et sp. nov. revealed carotenoids and chlorophylls typical of green algae. Bioorganic analysis showed a complex lipidome based on phospho- (PC), galacto- (MGDG and DGDG), betaine- (DGTS), and sulfoquinovosyl- (SQDG) membrane lipids, besides significant amounts of storage neutral lipids such as diacyl- (DAG) and triacylglycerols (TAG). The presence of saturated alkyl chains within all the membrane lipid classes in P. desertorum and Asterarcys sp. appears to reflect the need to maintain membrane fluidity and viscosity. In summary, African deserts likely still harbor new taxa to be described, and lipidomic analyses of such taxa may provide clues about their ability to survive in the extremely harsh desert habitats. © 2018 Phycological Society of America.

Analysis of Human Disturbance and Ecological Security Evolution in Oasis in Arid Area Based on LUCC: A Case Study of Oasis in the Northern Tianshan Mountain Slope Economic Zone

NASA Astrophysics Data System (ADS)

Song, W. J.; Chen, M. H.; Zhang, Q.; Liu, S. S.; Yang, J. N.

2017-07-01

Oases in arid areas are environmentally and economically vulnerable regions. Study on ecological security of oases in arid areas is of great significance to the stability and the economic development of oases. Based on Land Use/Land Cover data in 1965, 1980, 1995, 2005 and 2015, the study analyze the temporal and spatial changes in human disturbance and ecological security of oases in the Northern Tianshan Mountain Slope Economic Zone (NTMSEZ) in recent 50 years by establishing the ecological security index (ESI) through human disturbance index and landscape vulnerability index. The results showed that: in recent 50 years, the human disturbance of the NTMSEZ has been increased to current moderate human impacts. Urban construction, oasis expansion and farmland reclamation are the main factors of the increment. The human disturbance in Urumchi, Shihezi, Kuitun, Miquan and Changji is higher than that in other oases and that in core areas of oasis is higher than other areas. The ESI of the NTMSEZ increases firstly and then decreases. In most areas, the ESI is “relatively unsafe” and “critical”. However, there are increasingly more vulnerable areas, moving northwestwards and expanding southwards. The ESI gradually presents a “NW-SE” trend of zonal distribution pattern.

Water consumption and allocation strategies along the river oases of Tarim River based on large-scale hydrological modelling

NASA Astrophysics Data System (ADS)

Yu, Yang; Disse, Markus; Yu, Ruide

2016-04-01

With the mainstream of 1,321km and located in an arid area in northwest China, the Tarim River is China's longest inland river. The Tarim basin on the northern edge of the Taklamakan desert is an extremely arid region. In this region, agricultural water consumption and allocation management are crucial to address the conflicts among irrigation water users from upstream to downstream. Since 2011, the German Ministry of Science and Education BMBF established the Sino-German SuMaRiO project, for the sustainable management of river oases along the Tarim River. The project aims to contribute to a sustainable land management which explicitly takes into account ecosystem functions and ecosystem services. SuMaRiO will identify realizable management strategies, considering social, economic and ecological criteria. This will have positive effects for nearly 10 million inhabitants of different ethnic groups. The modelling of water consumption and allocation strategies is a core block in the SuMaRiO cluster. A large-scale hydrological model (MIKE HYDRO Basin) was established for the purpose of sustainable agricultural water management in the main stem Tarim River. MIKE HYDRO Basin is an integrated, multipurpose, map-based decision support tool for river basin analysis, planning and management. It provides detailed simulation results concerning water resources and land use in the catchment areas of the river. Calibration data and future predictions based on large amount of data was acquired. The results of model calibration indicated a close correlation between simulated and observed values. Scenarios with the change on irrigation strategies and land use distributions were investigated. Irrigation scenarios revealed that the available irrigation water has significant and varying effects on the yields of different crops. Irrigation water saving could reach up to 40% in the water-saving irrigation scenario. Land use scenarios illustrated that an increase of farmland area in the

ESR analyses for herbivore teeth and molluscs from Kharga, Dakhleh, and Bir Tarfawi Oases: Constraining water availability and hominin paleolithic activity in the Western Desert, Egypt

NASA Astrophysics Data System (ADS)

Blackwell, B. A. B.; Skinner, A. R.; Smith, J. R.; Hill, C. L.; Churcher, C. S.; Kieniewicz, J. M.; Adelsberger, K. A.; Blickstein, J. I. B.; Florentin, J. A.; Deely, A. E.; Spillar, K. V.

2017-12-01

Today, Bir Tarfawi, Kharga and Dakhleh Oases all sit in Egypt's hyperarid Western Desert. A dearth of naturally occurring surface water coupled with ≤ 0.1 mm/y of precipitation, and evaporation rates > 2 m/y make Bir Tarfawi uninhabitable today, while Dakhleh and Kharga depend on borehole water to support human inhabitation. Yet in scattered locations dotting the Quaternary surfaces and deposits near each oasis, Paleolithic artefacts, fossil ungulate teeth, and snails record times when surface water did exist in wetlands, small ponds, and even large lakes. At Bir Tarfawi in Marine Isotope Stages (MIS) 5, 7, and 13, wetlands or small lakes supported freshwater snails, large herbivores, and hominins. Dakhleh Oasis hosted a large lake in MIS 6 that provided a deep reliable water supply for many millennia subsequently. ESR dates on fossils and tufa dates show thriving lacustrine and terrestrial ecosystems at Dakhleh during MIS 5, 7, 9, 11, and 17, and in shorter episodes in MIS 1, 2, 3, 6, and 12. At Kharga Oasis, springs discharged along the Libyan Escarpment edge, but the water was ponded in small basins dammed within tufa deposits. These dated deposits and fossils attest that water existed there in MIS 2-11, and one spot dating to ∼ 2.3 Ma. This proxy evidence suggest that, thanks to higher rainfall and/or groundwater tables, sufficient water persisted for much of the Pleistocene, supporting food resources, like large herbivores and molluscs, to thrive and enabling hominin habitation. and activity in the Western Desert.

Ecosystem Services and Related Sustainable Management of River Oases along the Tarim River in Northwest China

NASA Astrophysics Data System (ADS)

Disse, M.; Keilholz, P.; Rumbaur, C.; Thevs, N.

2011-12-01

Within the Taklimakan Desert of Northwestern China, an area renowned for its extreme climate and vulnerable ecosystems, lies one of the largest inland rivers in the world, the Tarim River. Because the Tarim River is located in a remote area from the oceans, rainfall is extremely rare (less than 50 mm per year) but potential evaporation is high (3000 mm). Thus, the major source of water discharge comes from snowmelt and glacier-melt in the mountains. Though the water discharge into the Tarim River has experienced an increase over the past ten years, global climate change forecasts predict this water supply to decline within the century. The Tarim River is the major source of water in Northwestern China, and has become the hub of many economic activities related to agriculture and urban life. Over the past 50 years increased activity in the area has led to a severe decline in river flow. Both human and natural ecosystems have been impacted by water diversions. Since rainfall is rare, the majority of vegetation in this area depends solely on groundwater for survival, and plants are experiencing stress caused by decreasing groundwater levels. Recently nearby cities have experienced severe dust storms caused by the shrinking of the vegetative region along the river. SuMaRiO (Sustainable Management of River Oases) is a bundle project between Germany and China working to contribute to a sustainable land management which explicitly takes into account ecosystem functions (ESF) and ecosystem services (ESS). In a transdisciplinary research process, SuMaRiO will identify realizable management strategies, considering social, economic and ecological criteria. SuMaRiO is developing tools to work with Chinese decision makers to implement sustainable land management strategies. In addition, research is being conducted to estimate climate change impacts, floodplain biodiversity, and water runoff characteristics. The overarching goal of SuMaRiO is to support oasis management along

The role of psychological processes in estimates of stuttering severity.

PubMed

Manning, Walter; Gayle Beck, J

2013-12-01

To examine the associations of trait anxiety (STAI), social anxiety (SIAS), depression (BDI-II), and personality features (ADP-IV) with three measures of stuttering severity: %SS, Stuttering Severity, Instrument, and the Overall Assessment of the Speaker's Experience of Stuttering. Fifty adults with a history of stuttering served as participants. Participant scores on trait, anxiety, social anxiety, depression, and personality features were entered into a regression analysis, with the criterion variables (DVs) being: %SS, SSI-3, OASES total score. In order to explore the OASES, further, each of the four OASES subscales were also examined. A separate regression was conducted for, each dependent variable. The OASES total score model was significant (p<.0001) and revealed that social anxiety and, trait anxiety were the only significant predictors, with medium effect sizes noted for both variables. In contrast, percent syllables stuttered and the SSI were not significantly associated with psychological, variables, suggesting that anxiety may not always be related to overt indicators of stuttering. Depression and personality dysfunction were not significantly associated with any measure of, stuttering severity. Anxiety in the form of social and trait anxiety are significantly associated with stuttering, severity as indicated by the OASES. Traditional procedures for assigning severity ratings to individuals, who stutter based on percent syllables stuttered and the Stuttering Severity Instrument are not, significantly related to psychological processes central to the stuttering experience. Depression and, personality characteristics do not meaningfully account for stuttering. The reader will be able to: (a) differentiate forms of anxiety that are likely to be associated with stuttering (b) understand the importance of determining features of stuttering that go beyond the obvious, surface characteristics of stuttering frequency, and (c) discuss the important clinical and

The history and fate of the Nubian Sandstone Aquifer springs in the oasis depressions of the Western Desert, Egypt

NASA Astrophysics Data System (ADS)

Powell, Owen; Fensham, Rod

2016-03-01

Extraction of groundwater for agriculture has resulted in the loss of springs across arid regions of the globe. The history and fate are recorded of the artesian springs of Egypt's Western Desert, from ancient times to the present, spanning the rise and fall of the great civilisations from the Pharoanic dynasties to Persian, Greek and Roman conquests. The study area includes oases Kharga, Dakhla, Bahriya, Farafra and Siwa, and several outer and small oases around Siwa and the edge of the Qattara Depression. The region is hyper-arid, receiving 10 mm or less average annual precipitation and evaporation rates are in the vicinity of 3,000 mm/a. Groundwater in the oases is largely derived from bores discharging from the Nubian Sandstone Aquifer. Based on an extensive survey, conducted for the first time, attention is drawn to the rapid demise of springs as a result of modern irrigation schemes which continue to deplete groundwater supplies.

PubMed Central

Benzerroug, E. H.; Janssens, P. G.; Ambroise-Thomas, P.

1991-01-01

On the basis of geoclimatic characteristics, the Saharan region of Algeria (area, 2 million km2) is made up of several subregions; analysis of the historical data on malaria in this region seems to show that the epidemiological situation is closely linked to climatic and hydrographic conditions. A longitudinal sero-epidemiological study was conducted in this vast region from September 1983 to April 1985. The general findings do not appear to support the existence of active foci of transmission, but analysis of the data for certain oases and localities leads to a quite different assessment of the epidemiological situation. At Ouargla, for example, the serological results obtained by indirect immunofluorescence show prevalence of under 5% in the four successive surveys, whereas in Heïha oasis over 50% of subjects over 30 years of age were found to be seropositive. The results of the longitudinal seroepidemiological surveys conducted in a number of localities and oases in the Saharan region reflect the diversity of epidemiological settings and provide evidence that there is low-level malaria transmission in some oases such as Heïha, Yakou, Ihérir and probably in In-Salah. These surveys confirm that malaria transmission has been halted in the former foci such as Ouargla and Timimoune. Finally, the longitudinal sero-epidemiological study shows there are movements of potential parasite carriers from countries south of the Sahara and therefore that oases associated with trans-Saharan trade are vulnerable. PMID:1786620

The experience of stuttering among Ultra-Orthodox and Secular/Traditional Jews.

PubMed

Freud, Debora; Ezrati-Vinacour, Ruth; Katz-Bernstein, Nitza; Fostick, Leah

2017-12-01

This groundbreaking research compares the experience of stuttering among adult male People Who Stutter (PWS) from the ultra-Orthodox (UO) Jewish community in Israel to those from Secular/Traditional (ST) backgrounds. Participants were 32 UO and 31 ST PWS, aged 18-67 years. Self-report questionnaires utilized: Perceived Stuttering Severity (PSS); Overall Assessment of the Speaker's Experience of Stuttering (OASES-A); Students' Life Satisfaction Scale (SLSS); Situation Avoidance Behavior Checklist (SABC). Demographic, religious, and stuttering information was collected. Groups were compared on scales, and correlations between scales and the PSS. Subjective stuttering severity ratings were significantly higher among the UO. A significant group effect was found for the OASES-A quality of life subscale, but not other subscales. Significant positive correlations were found between: 1) PSS and OASES-A Total Impact; 2) PSS and 3 OASES subscales; and 3) PSS and SABC (indicating increased avoidance with increased stuttering severity rating). A significant negative correlation was found between the PSS and SLSS, indicating lower life satisfaction with higher rates of stuttering severity among the ST. Interestingly, when tested by group, significant correlations between the PSS and all other study measures were observed only among the ST. UO participants showed higher subjective stuttering severity ratings, yet less impact on quality of life, and no correlation between subjective stuttering and other measures of stuttering experience. These novel findings may result from the combined protective effect of religiosity and socio-cultural characteristics on UO PWS' well-being, despite heightened concern about social consequences of stuttering within UO society. Copyright © 2017 Elsevier Inc. All rights reserved.

The Search for Carbonates on Mars

NASA Technical Reports Server (NTRS)

Farmer, Jack D.; DesMarais, David J.; Morrison, David (Technical Monitor)

1994-01-01

Liquid water is presently unstable at the Martian surface, where the mean atmospheric pressure is 6 mbar (due to CO2) and the winter diurnal temperature ranges from 150 K at the pole to 220 K at the equator. Liquid water is widely regarded as a basic requirement for living systems, suggesting that life as we know it is not possible in present surface environments on Mars. However, life may survive within "oases" where liquid water is present. Potential oases on Mars include subsurface hydrothermal systems or deeply buried aquifers where chemoautolithotrophic microorganisms may exist. Potential metabolic strategies for primary production in such environments on Mars (and for the microbial mediation of geologic processes!) encompass the full range presently known for subsurface environments on the Earth (e.g. sulphate reduction, methanogenesis, acetogenesis, etc).

Sustainable management of river oases along the Tarim River (SuMaRiO) in Northwest China under conditions of climate change

NASA Astrophysics Data System (ADS)

Rumbaur, C.; Thevs, N.; Disse, M.; Ahlheim, M.; Brieden, A.; Cyffka, B.; Duethmann, D.; Feike, T.; Frör, O.; Gärtner, P.; Halik, Ü.; Hill, J.; Hinnenthal, M.; Keilholz, P.; Kleinschmit, B.; Krysanova, V.; Kuba, M.; Mader, S.; Menz, C.; Othmanli, H.; Pelz, S.; Schroeder, M.; Siew, T. F.; Stender, V.; Stahr, K.; Thomas, F. M.; Welp, M.; Wortmann, M.; Zhao, X.; Chen, X.; Jiang, T.; Luo, J.; Yimit, H.; Yu, R.; Zhang, X.; Zhao, C.

2015-03-01

The Tarim River basin, located in Xinjiang, NW China, is the largest endorheic river basin in China and one of the largest in all of Central Asia. Due to the extremely arid climate, with an annual precipitation of less than 100 mm, the water supply along the Aksu and Tarim rivers solely depends on river water. This is linked to anthropogenic activities (e.g., agriculture) and natural and semi-natural ecosystems as both compete for water. The ongoing increase in water consumption by agriculture and other human activities in this region has been enhancing the competition for water between human needs and nature. Against this background, 11 German and 6 Chinese universities and research institutes have formed the consortium SuMaRiO (Sustainable Management of River Oases along the Tarim River; http://www.sumario.de), which aims to create a holistic picture of the availability of water resources in the Tarim River basin and the impacts on anthropogenic activities and natural ecosystems caused by the water distribution within the Tarim River basin. On the basis of the results from field studies and modeling approaches as well as from suggestions by the relevant regional stakeholders, a decision support tool (DST) will be implemented that will then assist stakeholders in balancing the competition for water, acknowledging the major external effects of water allocation to agriculture and to natural ecosystems. This consortium was formed in 2011 and is funded by the German Federal Ministry of Education and Research. As the data collection phase was finished this year, the paper presented here brings together the results from the fields from the disciplines of climate modeling, cryology, hydrology, agricultural sciences, ecology, geoinformatics, and social sciences in order to present a comprehensive picture of the effects of different water availability schemes on anthropogenic activities and natural ecosystems along the

Genetic erosion of Phoenix dactylifera L.: Perceptible, probable or possible?

USDA-ARS?s Scientific Manuscript database

Genetic diversity of date palm (Phoenix dactylefera L.) encompasses genetic differences among and within species, subspecies, populations, cultivars, and individual clones in traditional oases and plantations. Components of this diversity can be estimated, throughout the tree’s ontogeny, at the phen...

Mission and modern citrus species diversity of Baja California Peninsula cases

USDA-ARS?s Scientific Manuscript database

The spring-fed mission oases of the Baja California peninsula, Mexico, hold several species, varieties and unique hybrids of heritage citrus, which may represent valuable genetic resources. Citrus species first arrived to the peninsula with the Jesuit missionaries (1697-1768), and new varieties were...

Exposure of resident sparrows to West Nile virus evidenced in South Tunisia.

PubMed

Hammouda, A; Lecollinet, S; Hamza, F; Nasri, I; Neb, A; Selmi, S

2015-12-01

During the last few years, several cases of West Nile virus (WNV) infection in humans have been reported in Tunisia. However, detailed information on WNV infection in wild birds, the primary amplifying host of WNV, are lacking. In this work, we investigated the exposure of wild sparrows (hybrid Passer domesticus × hispaniolensis) living in two oases in southern Tunisia (Gabès and Kébili oases) to WNV, through the detection of WNV-specific antibodies by using ELISA and microneutralization tests. In total, 208 birds were sampled (54 from Kébili, 154 from Gabès). Anti-WNV antibodies were detected in two birds, corresponding to an overall seroprevalence of 1%. There was no significant difference between the two sampled populations [1·85% (1/54) in Kébili, 0·65% (1/154) in Gabès]. These data provide indirect evidence of the exposure of resident sparrows in southern Tunisia to WNV.

Interculturalism and the Pendulum of Identity

ERIC Educational Resources Information Center

Svirsky, Marcelo; Mor-Sommerfeld, Aura

2012-01-01

This article offers a critical appraisal of the role played by cultural identity in intercultural bilingual Arabic-Hebrew schools in Israel. While engineered as oases of interculturalism amidst a life of ethnic segregation, such schools ultimately confront serious difficulties in escaping the constraints of identity politics and representation.…

76 FR 80870 - Notice of Determination of Pest-Free Areas in Mendoza Province, Argentina

Federal Register 2010, 2011, 2012, 2013, 2014

2011-12-27

... ;D=APHIS-2010-0032. The first commenter acknowledged Argentina's history of successful Medfly control...] Notice of Determination of Pest-Free Areas in Mendoza Province, Argentina AGENCY: Animal and Plant Health... Southern and Central Oases in the southern half of Mendoza Province in Argentina as pest-free areas for...

A Tribute to Waiting Room Moms Everywhere

ERIC Educational Resources Information Center

Ansfield, Mara

2008-01-01

Waiting rooms are oases for mothers of children with special needs. They congregate in these small holding areas, sitting on musty couches, while their children receive the latest therapeutic interventions. Sometimes they sit quietly, sneaking glances at each other while pretending to read year-old "People" magazines. Sometimes they crawl under a…

How Transformational Learning Promotes Caring, Consultation and Creativity, and Ultimately Contributes to Sustainable Development: Lessons from the Partnership for Education and Research about Responsible Living (PERL) Network

ERIC Educational Resources Information Center

Thoresen, Victoria Wyszynski

2017-01-01

Oases of learning which are transformative and lead to significant behavioural change can be found around the globe. Transformational learning has helped learners not only to understand what they have been taught but also to re-conceptualise and re-apply this understanding to their daily lives. Unfortunately, as many global reports indicate,…

Geologic Surface Effects of Underground Nuclear Testing, Buckboard Mesa, Climax Stock, Dome Mountain, Frenchman Flat, Rainier/Aqueduct Mesa, and Shoshone Mountain, Nevada Test Site, Nevada

USGS Publications Warehouse

Grasso, Dennis N.

2003-01-01

Surface effects maps were produced for 72 of 89 underground detonations conducted at the Frenchman Flat, Rainier Mesa and Aqueduct Mesa, Climax Stock, Shoshone Mountain, Buckboard Mesa, and Dome Mountain testing areas of the Nevada Test Site between August 10, 1957 (Saturn detonation, Area 12) and September 18, 1992 (Hunters Trophy detonation, Area 12). The ?Other Areas? Surface Effects Map Database, which was used to construct the maps shown in this report, contains digital reproductions of these original maps. The database is provided in both ArcGIS (v. 8.2) geodatabase format and ArcView (v. 3.2) shapefile format. This database contains sinks, cracks, faults, and other surface effects having a combined (cumulative) length of 136.38 km (84.74 mi). In GIS digital format, the user can view all surface effects maps simultaneously, select and view the surface effects of one or more sites of interest, or view specific surface effects by area or site. Three map layers comprise the database. They are: (1) the surface effects maps layer (oase_n27f), (2) the bar symbols layer (oase_bar_n27f), and (3) the ball symbols layer (oase_ball_n27f). Additionally, an annotation layer, named 'Ball_and_Bar_Labels,' and a polygon features layer, named 'Area12_features_poly_n27f,' are contained in the geodatabase version of the database. The annotation layer automatically labels all 295 ball-and-bar symbols shown on these maps. The polygon features layer displays areas of ground disturbances, such as rock spall and disturbed ground caused by the detonations. Shapefile versions of the polygon features layer in Nevada State Plane and Universal Transverse Mercator projections, named 'area12_features_poly_n27f.shp' and 'area12_features_poly_u83m.shp,' are also provided in the archive.

A preliminary investigation of daily variability of stuttering in adults.

PubMed

Constantino, Christopher D; Leslie, Paula; Quesal, Robert W; Yaruss, J Scott

2016-01-01

Variability in frequency of stuttering has made the results of treatment outcome studies difficult to interpret. Many factors that affect variability have been investigated; yet the typical range of variability experienced by speakers remains unknown. This study examined the day-to-day variability in the percentage of syllables containing stuttered and nonstuttered disfluencies in the speech of six adult speakers in three spontaneous speaking situations and two reading tasks. The frequency of moments stuttering during the tasks were compared within and between speakers and days to document the degree of variability in stuttering frequency and explore whether there were any consistent patterns. The Stuttering Severity Instrument-Fourth Edition (SSI-4) and Overall Assessment of the Speaker's Experience of Stuttering for Adults (OASES-A) were also tested for day-to-day variability. Correlations between frequency, severity, and life impact were made. The primary result of this study was the large range over which frequency of stuttering varied from day to day for the same individual. This variability did not correlate with any measures of stuttering severity but did correlate with life impact as measured by the OASES-A. No global pattern was detected in variability from day to day within or between participants. However, there were significantly more nonstuttered disfluencies present during the spontaneous speaking tasks than during the reading tasks. The day-to-day variability in the life impact of the disorder (OASES-A) was less than the day-to-day variability in observable stuttering behavior (percentage of syllables stuttered and SSI-4). Frequency of stuttering varies significantly from situation to situation and day to day, with observed variability exceeding the degree of change often reported in treatment outcomes studies from before to after treatment. This variability must be accounted for in future clinical and scientific work. Copyright © 2016 Elsevier Inc

A life-time of stuttering: how emotional reactions to stuttering impact activities and participation in older people.

PubMed

Bricker-Katz, Geraldine; Lincoln, Michelle; McCabe, Patricia

2009-01-01

The International Classification of Functioning, Disability and Health (ICF) framework has a pragmatic focus on how impairment impacts the individual's activities and participation. Stuttering is known to impact communication in younger adults but this has not been established in older people who stutter. In this study, emotional reactions to stuttering were investigated in a group 55 years and older who self-reported stuttering since childhood. This was a cross-sectional descriptive design. Twelve participants who self-reported that they still stuttered and in whom stuttering was confirmed, and 14 controls completed the Fear of Negative Evaluation Scale (FNES), The Endler Multi-dimensional Anxiety Scales-Trait (EMAS-T) and The Australian Personal Wellbeing Index (PWA-I). Participants whose stuttering persisted also completed the Overall Assessment of Speakers Experience of Stuttering (OASES). The group who stuttered scored significantly higher on the FNES, with scores in the social phobia range. Responses on the OASES showed that stuttering continues to be a negative experience for this older group. Results for the EMAS-T and PWA-I were within the average range across both participant groups however significant differences existed between the groups in the social evaluative and physical danger domains of the EMAS-T, and the satisfaction with health domain of the PWA-I. Significant fear of negative evaluation, which is the key feature for social anxiety, was found in the group of older people who stuttered with a higher level of trait anxiety in social evaluative domains. The OASES showed that they also reacted to stuttering and communication in daily situations with moderate to severe impact scores which showed that stuttering impacted on speaking activities and by those negative experiences limited communication. Limited communication and restricted participation in the lives of older people have implications for healthy productive ageing and this is discussed.

Survival and Growth of Oaks Planted for Wildlife in the Flatwoods

Treesearch

William H. Moore

1980-01-01

In the cutover pinelands of south Florida, hammocks of evergreen forests are oases of wildlife habitat, but they are too widely scattered to be effective. The artificial establishment of hammocks in the flatwoods has potential for enhancing forest wildlife. To dqrmmeminimum requirements for the establishment of native oaks in the flatwoods, acomparisonwas made between...

Finding a planet's heartbeat: surprising results from patient Mars

NASA Astrophysics Data System (ADS)

Stamenkovic, Vlada; Ward, Lewis; Fischer, Woodward; Russell, Michael J.

2016-10-01

We explore, from a 3D time-dependent perspective, the evolution of oxidizing and reducing planetary niches and how they form a planetary-scale redox network - from a planet's deep interior to its atmosphere. Such redox networks are similar to the circulatory system of animals, but instead of pressure gradients redox gradients drive the flow of electrons and create hotspots for nutrients and metabolic activity.Using time-dependent geodynamic and atmospheric models, we compute for Mars the time-dependent 3D distribution of 1) hydrogen- and methane-rich reducing subsurface environments, driven by serpentinization and radiolysis of water, and 2) oxygen-rich oases as a product of atmosphere-brine interactions governed by climate and surface chemistry.This is only a first step towards our greater goal to globally model the evolution of local redox environments through time for rocky planets. However, already now our preliminary results show where on Mars oxidizing and reducing oases might have existed and might still exist today. This opens the window to search for extinct and extant life on Mars from a probabilistic global 3D perspective.

Precipitation source inferred from stable isotopic composition of Pleistocene groundwater and carbonate deposits in the western desert of Egypt.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sultan, M.; Sturchio, N.; Hassan, F. A.

1997-01-01

An Atlantic source of precipitation can be inferred from stable isotopic data (H and O) for fossil groundwaters and uranium-series-dated carbonate spring deposits from oases in the Western Desert of Egypt. In the context of available stable isotopic data for fossil groundwaters throughout North Africa, the observed isotopic depletions ({delta}D -72 to -81{per_thousand}; {delta}{sup 18}O -10.6 to -11.5{per_thousand}) of fossil ({ge}32,000 yr B.P.) groundwaters from the Nubian aquifer are best explained by progressive condensation of water vapor from paleowesterly wet oceanic air masses that traveled across North Africa and operated at least as far back as 450,000 yr before themore » present. The values of {delta}{sup 18}O (17.1 to 25.9{per_thousand}) for 45,000- to >450,000-yr-old tufas and vein-filling calcite deposits from the Kharga and Farafra Oases are consistent with deposition from groundwaters having oxygen isotopic compositions similar to those of fossil groundwaters sampled recently at these locations.« less

US Army Institute of Surgical Research Annual Research Progress Report for Fiscal Year 1987.

DTIC Science & Technology

1987-10-01

oases, respiratory rate, chest roentgenograms), cardiovascular (blood pressure, central venous pressure, cardiac output), and renal (urine output, urine...Monitoring includes the precordial and/or esophageal stethoscope, peripheral pulse, blood pressure, central venous pressure, Swan-Ganz catheter... central venous , peripheral venous , and Swan-Ganz (7F, American Edward Laboratories, Irvine CA) catheters and an esophageal balloon were inserted. After a 2

Expansion of agricultural oasis in the Heihe River Basin of China: Patterns, reasons and policy implications

NASA Astrophysics Data System (ADS)

Song, Wei; Zhang, Ying

The Heihe River Basin (HRB) is the second largest inland river basin in the arid region of northwestern China. An agricultural oasis is a typical landscape in arid regions providing precious fertile soil, living space and ecological services. The agricultural oasis change has been one of the key issues in sustainable development in recent decades. In this paper, we examined the changes in the agricultural oasis in HRB and analyzed the socio-economic and climatic driving forces behind them. It was found that the agricultural oasis in HRB expanded by 25.11% and 14.82% during the periods of 1986-2000 and 2000-2011, respectively. Most of the newly added agricultural oases in HRB were converted from grassland (40.94%) and unused land (40.22%). The expansion in the agricultural oasis mainly occurred in the middle reaches of HRB, particularly in the counties of Shandan, Minle, Jinta and Jiuquan city. Changes in the rural labor force, annual temperature and precipitation have significant positive effects on agricultural oasis changes, while the ratio of irrigated agricultural oases has significant negative effects on agricultural oasis changes. The agricultural oasis expansion in HRB is the combined effect of human activity and climate change.

De novo assembly of the transcriptome of the non-model plant Streptocarpus rexii employing a novel heuristic to recover locus-specific transcript clusters.

PubMed

Chiara, Matteo; Horner, David S; Spada, Alberto

2013-01-01

De novo transcriptome characterization from Next Generation Sequencing data has become an important approach in the study of non-model plants. Despite notable advances in the assembly of short reads, the clustering of transcripts into unigene-like (locus-specific) clusters remains a somewhat neglected subject. Indeed, closely related paralogous transcripts are often merged into single clusters by current approaches. Here, a novel heuristic method for locus-specific clustering is compared to that implemented in the de novo assembler Oases, using the same initial transcript collections, derived from Arabidopsis thaliana and the developmental model Streptocarpus rexii. We show that the proposed approach improves cluster specificity in the A. thaliana dataset for which the reference genome is available. Furthermore, for the S. rexii data our filtered transcript collection matches a larger number of distinct annotated loci in reference genomes than the Oases set, while containing a reduced overall number of loci. A detailed discussion of advantages and limitations of our approach in processing de novo transcriptome reconstructions is presented. The proposed method should be widely applicable to other organisms, irrespective of the transcript assembly method employed. The S. rexii transcriptome is available as a sophisticated and augmented publicly available online database.

Courtyard Oases: Ecology at the Heart of the School.

ERIC Educational Resources Information Center

Danks, Sharon Gamson

2002-01-01

Explores ecologically planned school yards that provide students with places of wonder and exciting things to study, play with, and explore. The article describes three school courtyards that illustrate how schools can transform asphalt playgrounds and paved staff parking lots into stimulating play and learning areas for students. (GR)

The Date Palm Tree Rhizosphere Is a Niche for Plant Growth Promoting Bacteria in the Oasis Ecosystem

PubMed Central

Gtari, Maher; Boudabous, Abdellatif; Daffonchio, Daniele; Ouzari, Hadda-Imene

2015-01-01

In arid ecosystems environmental factors such as geoclimatic conditions and agricultural practices are of major importance in shaping the diversity and functionality of plant-associated bacterial communities. Assessing the influence of such factors is a key to understand (i) the driving forces determining the shape of root-associated bacterial communities and (ii) the plant growth promoting (PGP) services they provide. Desert oasis environment was chosen as model ecosystem where agriculture is possible by the microclimate determined by the date palm cultivation. The bacterial communities in the soil fractions associated with the root system of date palms cultivated in seven oases in Tunisia were assessed by culture-independent and dependent approaches. According to 16S rRNA gene PCR-DGGE fingerprinting, the shapes of the date palm rhizosphere bacterial communities correlate with geoclimatic features along a north-south aridity transect. Despite the fact that the date palm root bacterial community structure was strongly influenced by macroecological factors, the potential rhizosphere services reflected in the PGP traits of isolates screened in vitro were conserved among the different oases. Such services were exerted by the 83% of the screened isolates. The comparable numbers and types of PGP traits indicate their importance in maintaining the plant functional homeostasis despite the different environmental selection pressures. PMID:25866759

The date palm tree rhizosphere is a niche for plant growth promoting bacteria in the oasis ecosystem.

PubMed

Ferjani, Raoudha; Marasco, Ramona; Rolli, Eleonora; Cherif, Hanene; Cherif, Ameur; Gtari, Maher; Boudabous, Abdellatif; Daffonchio, Daniele; Ouzari, Hadda-Imene

2015-01-01

In arid ecosystems environmental factors such as geoclimatic conditions and agricultural practices are of major importance in shaping the diversity and functionality of plant-associated bacterial communities. Assessing the influence of such factors is a key to understand (i) the driving forces determining the shape of root-associated bacterial communities and (ii) the plant growth promoting (PGP) services they provide. Desert oasis environment was chosen as model ecosystem where agriculture is possible by the microclimate determined by the date palm cultivation. The bacterial communities in the soil fractions associated with the root system of date palms cultivated in seven oases in Tunisia were assessed by culture-independent and dependent approaches. According to 16S rRNA gene PCR-DGGE fingerprinting, the shapes of the date palm rhizosphere bacterial communities correlate with geoclimatic features along a north-south aridity transect. Despite the fact that the date palm root bacterial community structure was strongly influenced by macroecological factors, the potential rhizosphere services reflected in the PGP traits of isolates screened in vitro were conserved among the different oases. Such services were exerted by the 83% of the screened isolates. The comparable numbers and types of PGP traits indicate their importance in maintaining the plant functional homeostasis despite the different environmental selection pressures.

The effects of actors vocal exercises for relaxation on fluency: A preliminary study.

PubMed

Monteagudo, Emily; Sawyer, Jean; Sivek-Eskra, Alyssa

2017-12-01

To determine the efficacy of treatment based on Kristin Linklater's technique for vocal preparation for performance for use with people who stutter. A protocol for a treatment for stuttering involving breathing exercises, relaxation techniques, and focus on awareness was designed by the first author from Linklater's published exercises in her book Freeing the Natural Voice (2006). Four adults who stutter participated in a 12-week, single-case reversal design study. Treatment efficacy was determined by baseline and post-treatment measures on the OASES, self-report naturalness, tension and severity scale, and percentage of stuttering-like disfluency (SLD). Qualitative measures included a daily tension and practice log, a program completion questionnaire, and accounts from the clinicians administering the treatment protocol. Three of four participants scored lower on the OASES post-treatment, suggesting that the impact of stuttering on their daily lives had decreased. All four experienced a reduction in the number of SLD counted throughout treatment sessions compared to baseline data. A treatment for stuttering based on Linklater's work including regulation of breathing, relaxation, and awareness of breath may be effective in improving fluency and decreasing the impact of stuttering and warrants further study. Copyright © 2017 Elsevier Inc. All rights reserved.

Interservice/Industry Training Systems Conference (13th) Held in Orlando, Florida on 2-5 December 1991

DTIC Science & Technology

1991-12-01

within the be able to design and implement tactile feedback, cube. These simulations range from pc-oased binaural hearing, and autosterioscopic...of the 6-per-revolution beat simulate local wind velocities near the hub. experienced by the tandem 3-blade rotor hubs of the CH46, thus minimizing the...totally -- taking inventory and main- ignored- in another. For example, the taining the security of the videotape entitled " Beating the Odds -- of the

Hydrothermal exploration and astrobiology: oases for life in distant oceans?

NASA Astrophysics Data System (ADS)

German, Christopher R.

2004-04-01

High-temperature submarine hydrothermal fields on Earth's mid-ocean ridges play host to exotic ecosystems with fauna previously unknown to science. Because these systems draw significant energy from chemosynthesis rather than photosynthesis, it has been postulated that the study of such systems could have relevance to the origins of life and, hence, astrobiology. A major flaw to that argument, however, is that modern basalt-hosted submarine vents are too oxidizing and lack the abundant free hydrogen required to drive abiotic organic synthesis and/or the energy yielding reactions that the most primitive anaerobic thermophiles isolated from submarine vent-sites apparently require. Here, however, the progress over the past decade in which systematic search strategies have been used to identify previously overlooked venting on the slow-spreading Mid-Atlantic Ridge and the ultra-slow spreading Arctic and SW Indian Ridges is described. Preliminary identification of fault-controlled venting in a number of these sites has led to the discovery of at least two high-temperature hydrothermal fields hosted in ultramafic rocks which emit complex organic molecules in their greater than 360 °C vent-fluids. Whether these concentrations represent de novo organic synthesis within the hydrothermal cell remains open to debate but it is probable that many more such sites exist throughout the Atlantic, Arctic and SW Indian Oceans. One particularly intriguing example is the Gakkel Ridge, which crosses the floor of the Arctic Ocean. On-going collaborations between oceanographers and astrobiologists are actively seeking to develop a new class of free-swimming autonomous underwater vehicle, equipped with appropriate chemical sensors, to conduct long-range missions that will seek out, locate and investigate new sites of hydrothermal venting at the bottom of this, and other, ice-covered oceans.

Cryoconite pans on Snowball Earth: supraglacial oases for Cryogenian eukaryotes?

PubMed

Hoffman, P F

2016-11-01

Geochemical, paleomagnetic, and geochronological data increasingly support the Snowball Earth hypothesis for Cryogenian glaciations. Yet, the fossil record reveals no clear-cut evolutionary bottleneck. Climate models and the modern cryobiosphere offer insights on this paradox. Recent modeling implies that Snowball continents never lacked ice-free areas. Wind-blown dust from these areas plus volcanic ash were trapped by snow on ice sheets and sea ice. At a Snowball onset, sea ice was too thin to flow and ablative ice was too cold for dust retention. After a few millenia, sea ice reached 100 s of meters in thickness and began to flow as a 'sea glacier' toward an equatorial ablation zone. At first, dust advected to the ablative surface was recycled by winds, but as the surface warmed with rising CO 2 , dust aka cryoconite began to accumulate. As a sea glacier has no terminus, cryoconite saturated the surface. It absorbed solar radiation, supported cyanobacterial growth, and sank to an equilibrium depth forming holes and decameter-scale pans of meltwater. As meltwater production rose, drainages developed, connecting pans to moulins, where meltwater was flushed into the subglacial ocean. Flushing cleansed the surface, creating a stabilizing feedback. If the dust flux rose, cryoconite was removed; if the dust flux waned, cryoconite accumulated. In addition to cyanobacteria, modern cryoconite holes are inhabited by green algae, fungi, protists, and certain metazoans. On Snowball Earth, cryoconite pans provided stable interconnected habitats for eukaryotes tolerant of fresh to brackish cold water on an ablation surface 60 million km 2 in area. Flushing and burial of organic matter was a potential source of atmospheric oxygen. Dominance of green algae among Ediacaran eukaryotic primary producers is a possible legacy of Cryogenian cryoconite pans, but a schizohaline ocean-supraglacial freshwater and subglacial brine-may have exerted selective stress on early metazoans, or impeded their evolution. © 2016 John Wiley & Sons Ltd.

Thermochemical Data for Propellant Ingredients and their Products of Explosion

DTIC Science & Technology

1949-12-01

oases except perhaps at temperatures below 2000°K. The logarithms of all the equilibrium constants except Ko have been tabulated since these logarithms...have almost constant first differences. Linear interpolation may lead to an error of a unit or two in the third decimal place for Ko but the...dissociation products OH, H and KO will be formed and at still higher temperatures the other dissociation products 0*, 0, N and C will begin to appear

Armor Plate Ballistic Testing

DTIC Science & Technology

1944-08-02

sistanoe to penotration characteristics. However, it is one of the most important factors involved, and when the type of steel , its soundness and its...this test and not to use it in comparing radically differdnt types of plates, such as steel and Dural. Such a comparison can be made only by examining...in many oases, For this reason it became necessary to develop an additional test for the oharaoteristio in rolled armor ( steel "soundness) and cast

Women in the US Army: A Quiet Revolution in Military Affairs

DTIC Science & Technology

2007-05-24

Marines, Army Rangers , Navy Special Warfare teams, and other military forces to invade Grenada. The planning time used for this operation was “very...all Away with the horizons too. The sun is beyond them— The moon and stars do not touch them. I seek new galaxies — But only as oases for respite...commonly acknowledged that Ranger School has a lasting effect on its graduates. It is not uncommon for male Soldiers to reflect on their Ranger School

Analysis of Individual Race Relations and Equal Opportunity Training in Army Schools

DTIC Science & Technology

1978-10-01

REHAVIORAL mad SOCIAL SCIENCES 5001 Eisenhower Aveove Alexendriv, Virliale 22333 L Army Project Numb 9Q7 4A76, Equal Opportunity This report on an...rv LVU ARI TECHNICAL REPQ TR -78-B 15 ADA078002 ANALYSIS OF INDIVIDUAL RACE RELATIONS AND EQUAL OPPORTUNITY TRAINING IN ARMY SCHOOLS by William S...BEHAVIORAL and SOCIAL SCIENCES 5001 Eisenhower Aveumo DISnhlm[B’ON STATEM’NT A Alexandria, Virginlu 22333 Appioved. or public 1o1Oase; Distributicn

Oasis desert farming selects environment-specific date palm root endophytic communities and cultivable bacteria that promote resistance to drought.

PubMed

Cherif, Hanene; Marasco, Ramona; Rolli, Eleonora; Ferjani, Raoudha; Fusi, Marco; Soussi, Asma; Mapelli, Francesca; Blilou, Ikram; Borin, Sara; Boudabous, Abdellatif; Cherif, Ameur; Daffonchio, Daniele; Ouzari, Hadda

2015-08-01

Oases are desert-farming agro-ecosystems, where date palm (Phoenix dactylifera L.) plays a keystone role in offsetting the effects of drought and maintaining a suitable microclimate for agriculture. At present, abundance, diversity and plant growth promotion (PGP) of date palm root-associated bacteria remain unknown. Considering the environmental pressure determined by the water scarcity in the desert environments, we hypothesized that bacteria associated with date palm roots improve plant resistance to drought. Here, the ecology of date palm root endophytes from oases in the Tunisian Sahara was studied with emphasis on their capacity to promote growth under drought. Endophytic communities segregated along a north-south gradient in correlation with geo-climatic parameters. Screening of 120 endophytes indicated that date palm roots select for bacteria with multiple PGP traits. Bacteria rapidly cross-colonized the root tissues of different species of plants, including the original Tunisian date palm cultivar, Saudi Arabian cultivars and Arabidopsis. Selected endophytes significantly increased the biomass of date palms exposed to repeated drought stress periods during a 9-month greenhouse experiment. Overall, results indicate that date palm roots shape endophytic communities that are capable to promote plant growth under drought conditions, thereby contributing an essential ecological service to the entire oasis ecosystem. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

Paleoenvironmental change as derived from loess sediment properties: Examples of last glacial loess sites from the Carpathian Basin

NASA Astrophysics Data System (ADS)

Lehmkuhl, Frank; Zeeden, Christian; Bösken, Janina; Eckmeier, Eileen; Hambach, Ulrich; Hauck, Thomas; Klasen, Nicole; Markovic, Slobodan; Obreht, Igor; Schulte, Philipp; Sümegi, Pal; Chu, Wei; Timar-Gabor, Alida; Veres, Daniel

2015-04-01

The project B1 within the CRC 806 "Our way to Europe" focuses on the "Eastern Trajectory" of modern human migration from Africa into Europe. The Middle East, and SE Europe constitute the principal areas to be investigated. SE Europe has become a special research focus since two early Homo sapiens individuals have been found at Oase Cave in the southern Banat. The fossils lack any stratigraphic context; cultural and environmental circumstances of these findings have remained unclear. In the neighbourhood of Oase Cave, however, several early Upper Palaeolithic sites, embedded in loess sequences were known since the 1950's. Some sites were re-investigated by our research team. Conceptionally we are following the idea of upland-lowland interaction, which combines parameters as sedimentary transport, sediment distribution, and paleosol development in different altitudes, all influenced by paleoclimate in space and time. Furthermore, some detailed studies concerning site-formation processes and the quality of open-air sites (sedimentary development, paleoecology, multilayering, reworking, human impact on soils and sediments) are being conducted at selected localities. Recent investigations of the loess-paleosol sequences (LPS) in SE Europe provided important environmental information which differ from "classical" ecological approaches derived from other European loess provinces. New luminescence dating results provide a sensitive chronology of environmental changes recorded in the LPS from both upland and lowland positions, giving the potential to link these.

Remote Sensing-Based Detection and Spatial Pattern Analysis for Geo-Ecological Niche Modeling of Tillandsia SPP. In the Atacama, Chile

NASA Astrophysics Data System (ADS)

Wolf, N.; Siegmund, A.; del Río, C.; Osses, P.; García, J. L.

2016-06-01

In the coastal Atacama Desert in Northern Chile plant growth is constrained to so-called `fog oases' dominated by monospecific stands of the genus Tillandsia. Adapted to the hyperarid environmental conditions, these plants specialize on the foliar uptake of fog as main water and nutrient source. It is this characteristic that leads to distinctive macro- and micro-scale distribution patterns, reflecting complex geo-ecological gradients, mainly affected by the spatiotemporal occurrence of coastal fog respectively the South Pacific Stratocumulus clouds reaching inlands. The current work employs remote sensing, machine learning and spatial pattern/GIS analysis techniques to acquire detailed information on the presence and state of Tillandsia spp. in the Tarapacá region as a base to better understand the bioclimatic and topographic constraints determining the distribution patterns of Tillandsia spp. Spatial and spectral predictors extracted from WorldView-3 satellite data are used to map present Tillandsia vegetation in the Tarapaca region. Regression models on Vegetation Cover Fraction (VCF) are generated combining satellite-based as well as topographic variables and using aggregated high spatial resolution information on vegetation cover derived from UAV flight campaigns as a reference. The results are a first step towards mapping and modelling the topographic as well as bioclimatic factors explaining the spatial distribution patterns of Tillandsia fog oases in the Atacama, Chile.

Kashgar, China

NASA Image and Video Library

2016-12-12

In far western China is Xinjiang Prefecture, with its capital of Kashgar (bottom right on image). The area has a rich history of over 2,000 years; Kashgar has served as a trading post and important city on the Silk Road. The folded sedimentary rocks outline valleys that contain oases, cultivated for thousands of years. The image was acquired 23 July 2014, covers an area of 37.3 by 46.3 kilometers, and is located at 39.8 degrees north, 75.8 degrees east. http://photojournal.jpl.nasa.gov/catalog/PIA21189

Integrated modeling of protein-coding genes in the Manduca sexta genome using RNA-Seq data from the biochemical model insect

PubMed Central

Cao, Xiaolong; Jiang, Haobo

2015-01-01

The genome sequence of Manduca sexta was recently determined using 454 technology. Cufflinks and MAKER2 were used to establish gene models in the genome assembly based on the RNA-Seq data and other species' sequences. Aided by the extensive RNA-Seq data from 50 tissue samples at various life stages, annotators over the world (including the present authors) have manually confirmed and improved a small percentage of the models after spending months of effort. While such collaborative efforts are highly commendable, many of the predicted genes still have problems which may hamper future research on this insect species. As a biochemical model representing lepidopteran pests, M. sexta has been used extensively to study insect physiological processes for over five decades. In this work, we assembled Manduca datasets Cufflinks 3.0, Trinity 4.0, and Oases 4.0 to assist the manual annotation efforts and development of Official Gene Set (OGS) 2.0. To further improve annotation quality, we developed methods to evaluate gene models in the MAKER2, Cufflinks, Oases and Trinity assemblies and selected the best ones to constitute MCOT 1.0 after thorough crosschecking. MCOT 1.0 has 18,089 genes encoding 31,666 proteins: 32.8% match OGS 2.0 models perfectly or near perfectly, 11,747 differ considerably, and 29.5% are absent in OGS 2.0. Future automation of this process is anticipated to greatly reduce human efforts in generating comprehensive, reliable models of structural genes in other genome projects where extensive RNA-Seq data are available. PMID:25612938

Recreational value of an oasis in Oman.

PubMed

Zekri, Slim; Mbaga, Msafiri; Fouzai, Ayoub; Al-Shaqsi, Saif

2011-07-01

Increasing demand for water to develop non-agricultural activities is causing water to be diverted to high-value uses at the expense of irrigation. However, agriculture provides a flow of amenities in the desert environment which are not either accounted or paid. Oases are spread all over the globe and are threatened for various reasons among which is the high pressure of demand for fresh water. This paper estimates the recreation use value of an oasis. The paper is based on the Misfat Al-Abryeen oasis in Oman, a man-made area of streams and woodland. The travel cost method is used through an on-site questionnaire distributed to 230 visitors. Around 75% of visitors to the oasis also visited other historical or ecological sites during the same day-trip. The econometric model is estimated using negative binomial regression with endogenous stratification. The average consumer surplus, or benefit, from visiting Misfat Al-Abryeen is estimated at US$ 104.74 per individual per trip. The total social benefit from this oasis is estimated at $366,590 per year. These results underscore the importance of the role played by irrigated agriculture in the provision of amenity services for the tourism sector in a desert environment. The sustainability of the irrigation activity depends on the recognition of the recreation role of oases and the transfer of part of these benefits to the farmers who maintain the irrigation system. The implementation of an entrance fee to the oasis might increase farmers' profit by 6-21%.

Recreational Value of an Oasis in Oman

NASA Astrophysics Data System (ADS)

Zekri, Slim; Mbaga, Msafiri; Fouzai, Ayoub; Al-Shaqsi, Saif

2011-07-01

Increasing demand for water to develop non-agricultural activities is causing water to be diverted to high-value uses at the expense of irrigation. However, agriculture provides a flow of amenities in the desert environment which are not either accounted or paid. Oases are spread all over the globe and are threatened for various reasons among which is the high pressure of demand for fresh water. This paper estimates the recreation use value of an oasis. The paper is based on the Misfat Al-Abryeen oasis in Oman, a man-made area of streams and woodland. The travel cost method is used through an on-site questionnaire distributed to 230 visitors. Around 75% of visitors to the oasis also visited other historical or ecological sites during the same day-trip. The econometric model is estimated using negative binomial regression with endogenous stratification. The average consumer surplus, or benefit, from visiting Misfat Al-Abryeen is estimated at US 104.74 per individual per trip. The total social benefit from this oasis is estimated at 366,590 per year. These results underscore the importance of the role played by irrigated agriculture in the provision of amenity services for the tourism sector in a desert environment. The sustainability of the irrigation activity depends on the recognition of the recreation role of oases and the transfer of part of these benefits to the farmers who maintain the irrigation system. The implementation of an entrance fee to the oasis might increase farmers' profit by 6-21%.

The geochemistry of uranium and thorium isotopes in the Western Desert of Egypt

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dabous, A.A.

1994-11-01

The concentrations of {sup 238}U, {sup 234}U, {sup 232}Th, and {sup 228}Th have been measured in the groundwaters of the Bahariya and Farafra oases of the Western Desert of Egypt. These waters are characterized by normal amounts of U, but unusually high concentrations of Th. The pattern of variation of the parent isotopes, {sup 238}U and {sup 232}Th, as well as the daughter isotopes, {sup 234}U, {sup 230}Th, and {sup 228}Th, is systematic within and between the two oases. From the unusually consistent distribution of the {sup 234}U/{sup 238}U activity ratios one can conclude that the samples from both oasesmore » are representative of a two-component mixing system. One component, characterized by low U content and a high {sup 234}U/{sup 238}U activity ratio, is typical of deep artesian systems and probably represents flowthrough water derived from the Nubian highlands to the south. The second component is characterized by a greater U concentration and a low activity ratio. This signature is hypothesized as being derived by leaching of downward infiltrating water during pluvial times. The source of the U may be the uraniferous phosphate strata that overly the sandstone aquifer in both oasis areas. Higher Th values are associated with the artesian flow component of the mixing system and suggests that Th-bearing minerals may be abundant in the Nubian sandstone aquifer. The distribution of {sup 230}Th and {sup 228}Th in the water samples supports this interpretation.« less

Integrated modeling of protein-coding genes in the Manduca sexta genome using RNA-Seq data from the biochemical model insect.

PubMed

Cao, Xiaolong; Jiang, Haobo

2015-07-01

The genome sequence of Manduca sexta was recently determined using 454 technology. Cufflinks and MAKER2 were used to establish gene models in the genome assembly based on the RNA-Seq data and other species' sequences. Aided by the extensive RNA-Seq data from 50 tissue samples at various life stages, annotators over the world (including the present authors) have manually confirmed and improved a small percentage of the models after spending months of effort. While such collaborative efforts are highly commendable, many of the predicted genes still have problems which may hamper future research on this insect species. As a biochemical model representing lepidopteran pests, M. sexta has been used extensively to study insect physiological processes for over five decades. In this work, we assembled Manduca datasets Cufflinks 3.0, Trinity 4.0, and Oases 4.0 to assist the manual annotation efforts and development of Official Gene Set (OGS) 2.0. To further improve annotation quality, we developed methods to evaluate gene models in the MAKER2, Cufflinks, Oases and Trinity assemblies and selected the best ones to constitute MCOT 1.0 after thorough crosschecking. MCOT 1.0 has 18,089 genes encoding 31,666 proteins: 32.8% match OGS 2.0 models perfectly or near perfectly, 11,747 differ considerably, and 29.5% are absent in OGS 2.0. Future automation of this process is anticipated to greatly reduce human efforts in generating comprehensive, reliable models of structural genes in other genome projects where extensive RNA-Seq data are available. Copyright © 2015 Elsevier Ltd. All rights reserved.

Studies of plant colonisation by closely related Bacillus amyloliquefaciens biocontrol agents using strain specific quantitative PCR assays.

PubMed

Johansson, Anna H; Bejai, Sarosh; Niazi, Adnan; Manzoor, Shahid; Bongcam-Rudloff, Erik; Meijer, Johan

2014-12-01

Certain strains of Bacillus amyloliquefaciens can colonize plants and improve growth and stress management. In order to study these effects, bacterial growth dynamics on plants and in the rhizosphere are of interest calling for specific analytical tools. For that purpose, quantitative real-time PCR (qPCR) assays were developed in order to differentiate among three closely related B. amyloliquefaciens subsp. plantarum strains (UCMB5033, UCMB5036, UCMB5113) and to determine their levels with high accuracy. Oligonucleotide primers were designed for strain unique gene sequences and used for SYBR green based qPCR analysis. Standard curves covered a wide linear range (10(6)) of DNA amounts with the lowest detection level at 50 fg. Post-reaction melting curve analysis showed only a single product. Accurate threshold cycles were obtained, even in the presence of high excess of related Bacillus strains and total bacterial DNA from soil. Analysis of Bacillus colonisation after seed treatment of two oilseed rape cultivars (Oase and Ritz) grown on agar support showed a time dependent effect but that the bacteria mostly were found on root tissues and little on green tissues. The colonisation on plants grown in soil varied among the Bacillus strains where Oase seemed to house more bacteria than Ritz. Applied as a mixture, all three Bacillus strains co-existed on the roots of plants grown in soil. The qPCR assay in combination with other techniques will be a powerful tool to study plant interactions of these B. amyloliquefaciens biocontrol agents to further understand the requirements for successful interactions and improvement of plant properties.

Prenatal testosterone and stuttering.

PubMed

Montag, Christian; Bleek, Benjamin; Breuer, Svenja; Prüss, Holger; Richardt, Kirsten; Cook, Susanne; Yaruss, J Scott; Reuter, Martin

2015-01-01

The prevalence of stuttering is much higher in males compared to females. The biological underpinnings of this skewed sex-ratio is poorly understood, but it has often been speculated that sex hormones could play an important role. The present study investigated a potential link between prenatal testosterone and stuttering. Here, an indirect indicator of prenatal testosterone levels, the Digit Ratio (2D:4D) of the hand, was used. As numerous studies have shown, hands with more "male" characteristics (putatively representing greater prenatal testosterone levels) are characterized by a longer ring finger compared to the index finger (represented as a lower 2D:4D ratio) in the general population. We searched for differences in the 2D:4D ratios between 38 persons who stutter and 36 persons who do not stutter. In a second step, we investigated potential links between the 2D:4D ratio and the multifaceted symptomatology of stuttering, as measured by the Overall Assessment of the Speaker's Experience of Stuttering (OASES), in a larger sample of 44 adults who stutter. In the first step, no significant differences in the 2D:4D were observed between individuals who stutter and individuals who do not stutter. In the second step, 2D:4D correlated negatively with higher scores of the OASES (representing higher negative experiences due to stuttering), and this effect was more pronounced for female persons who stutter. The findings indicate for the first time that prenatal testosterone may influence individual differences in psychosocial impact of this speech disorder. Copyright © 2014 Elsevier Ltd. All rights reserved.

A compact high-resolution 3-D imaging spectrometer for discovering Oases on Mars

USGS Publications Warehouse

Ge, J.; Ren, D.; Lunine, J.I.; Brown, R.H.; Yelle, R.V.; Soderblom, L.A.; ,

2002-01-01

A new design for a very lightweight, very high throughput reflectance sectrometer enabled by two new technologies being developed is presented. These new technologies include integral field unit optics to enable simultaneous imaging and spectroscopy at high spatial resolution with an infrared (IR) array, and silicon grisms to enable compact and high-resolution spectroscopy.

Desert salt flats as oases for the spider Saltonia incerta Banks (Araneae: Dictynidae).

PubMed

Crews, Sarah C; Gillespie, Rosemary G

2014-10-01

The deserts of southwestern North America have undergone dramatic changes over their recent geological history including large changes in size and connectivity during the Pleistocene glaciopluvial cycles. This study examines the population history of the rare spider Saltonia incerta, once thought to be extinct, to determine the role of past climatological events in shaping the structure of the species. This species is restricted to salt crusts of intermittent or dry lakes, streams or rivers in the desert southwest, a region that was much wetter during glacial periods. We examine the distribution and genetic variability of populations to test whether there is recent dispersal throughout the range of the species. Analyses of mitochondrial and nuclear DNA indicate significant population structure, with one major clade comprising New Mexico localities and one comprising California-northern Baja California localities. Finer-scale structure is evident within the California clade, although not all of the subclades are reciprocally monophyletic. However, isolation with migration analysis suggests that migration is very low to non-existent. These results extend the known distribution of Saltonia, provide genetic evidence of strong isolation among localities within drainage basins and between drainage basins and provide a mechanistic understanding of population connectivity after the aridification of the American southwest. The implication is that although the species' distribution has been fragmented, populations have persisted throughout this area, suggesting that desert salt flats may have served as refugia for at least some terrestrial species.

Desert salt flats as oases for the spider Saltonia incerta Banks (Araneae: Dictynidae)

PubMed Central

Crews, Sarah C; Gillespie, Rosemary G

2014-01-01

The deserts of southwestern North America have undergone dramatic changes over their recent geological history including large changes in size and connectivity during the Pleistocene glaciopluvial cycles. This study examines the population history of the rare spider Saltonia incerta, once thought to be extinct, to determine the role of past climatological events in shaping the structure of the species. This species is restricted to salt crusts of intermittent or dry lakes, streams or rivers in the desert southwest, a region that was much wetter during glacial periods. We examine the distribution and genetic variability of populations to test whether there is recent dispersal throughout the range of the species. Analyses of mitochondrial and nuclear DNA indicate significant population structure, with one major clade comprising New Mexico localities and one comprising California-northern Baja California localities. Finer-scale structure is evident within the California clade, although not all of the subclades are reciprocally monophyletic. However, isolation with migration analysis suggests that migration is very low to non-existent. These results extend the known distribution of Saltonia, provide genetic evidence of strong isolation among localities within drainage basins and between drainage basins and provide a mechanistic understanding of population connectivity after the aridification of the American southwest. The implication is that although the species' distribution has been fragmented, populations have persisted throughout this area, suggesting that desert salt flats may have served as refugia for at least some terrestrial species. PMID:25614800

Space Radar Image of Pishan, China

NASA Technical Reports Server (NTRS)

1994-01-01

This radar image is centered near the small town of Pishan in northwest China, about 280 km (174 miles) southeast of the city of Kashgar along the ancient Silk Route in the Taklamakan desert of the Xinjiang Province. Geologists are using this radar image as a map to study past climate changes and tectonics of the area. The irregular lavender branching patterns in the center of the image are the remains of ancient alluvial fans, gravel deposits that have accumulated at the base of the mountains during times of wetter climate. The subtle striped pattern cutting across the ancient fans are caused by thrusting of the Kun Lun Mountains north. This motion is caused by the continuing plate-tectonic collision of India with Asia. Modern fans show up as large lavender triangles above the ancient fan deposits. Yellow areas on the modern fans are vegetated oases. The gridded pattern results from the alignment of poplar trees that have been planted as wind breaks. The reservoir at the top of the image is part of a sophisticated irrigation system that supplies water to the oases. This image was acquired by the Spaceborne Imaging Radar-C/X-band Synthetic Aperture Radar (SIR-C/X-SAR) aboard the space shuttle Endeavour in April 1994. This image is centered at 37.4 degrees north latitude, 78.3 degrees east longitude and shows an area approximately 50 km by 100 km (31 miles by 62 miles). The colors are assigned to different frequencies and polarizations of the radar as follows: Red is L-band horizontally transmitted, horizontally received; green is L-band horizontally transmitted, vertically received; and blue is C-band horizontally transmitted and vertically received. SIR-C/X-SAR, a joint mission of the German, Italian, and the United States space agencies, is part of NASA's Mission to Planet Earth.

Morphometric distances among five ethnic groups and evaluation of the secular trend in historical Libya.

PubMed

Danubio, Maria Enrica; Martorella, Domenico; Rufo, Fabrizio; Vecchi, Elvira; Sanna, Emanuele

2011-01-01

This study analysed the variations, both in space and time, of 10 body dimensions and 2 anthropometric indexes of 745 adult males belonging to 5 ethnic groups of historical Lybia (el-Haràbi, el-Baraghìts, Marabtìn, Oases inhabitants and Tuareg). The data were collected in the years 1928 and 1932 by Puccioni and Cipriani, two Italian anthropologists. The aim was to reconstruct the biological history of Libya at the time, and thus contribute to the ongoing debate on the evolution of the biological standard of living in developing Countries. The subjects were analysed by ethnicity and by 10-year age groups, after adjusting for age. The results of ANCOVA and Tukey's post-hoc test show that among and between groups there are statistical significant differences overall for armspan, height, head breadth, bizygomatic breadth, biiliac breadth/height and head breadth/head length indexes. By means of the cluster analysis, the el-Haràbi, el-Baraghìts and Marabtìn groups cluster together, whereas the Tuareg and Oases inhabitants cluster separately one from the other and both from the other three ethnic groups. Within-group variations are not very marked in all ethnicities. In general, there is the tendency, not statistically significant, to the reduction and/or stasis of body dimensions from the older to the younger, and the differences are greater among the older than the younger age classes. In conclusion, it can be argued that these groups, all different culturally and geographically, were following the same tendency of stasis of the secular trend of the body dimensions considered in this study, and such stasis persisted since, at least, the last twenty years of the 19th century, when the older were born.

Functional connectivity changes in adults with developmental stuttering: a preliminary study using quantitative electro-encephalography

PubMed Central

Joos, Kathleen; De Ridder, Dirk; Boey, Ronny A.; Vanneste, Sven

2014-01-01

Introduction: Stuttering is defined as speech characterized by verbal dysfluencies, but should not be seen as an isolated speech disorder, but as a generalized sensorimotor timing deficit due to impaired communication between speech related brain areas. Therefore we focused on resting state brain activity and functional connectivity. Method: We included 11 patients with developmental stuttering and 11 age matched controls. To objectify stuttering severity and the impact on quality of life (QoL), we used the Dutch validated Test for Stuttering Severity-Readers (TSS-R) and the Overall Assessment of the Speaker’s Experience of Stuttering (OASES), respectively. Furthermore, we used standardized low resolution brain electromagnetic tomography (sLORETA) analyses to look at resting state activity and functional connectivity differences and their correlations with the TSS-R and OASES. Results: No significant results could be obtained when looking at neural activity, however significant alterations in resting state functional connectivity could be demonstrated between persons who stutter (PWS) and fluently speaking controls, predominantly interhemispheric, i.e., a decreased functional connectivity for high frequency oscillations (beta and gamma) between motor speech areas (BA44 and 45) and the contralateral premotor (BA6) and motor (BA4) areas. Moreover, a positive correlation was found between functional connectivity at low frequency oscillations (theta and alpha) and stuttering severity, while a mixed increased and decreased functional connectivity at low and high frequency oscillations correlated with QoL. Discussion: PWS are characterized by decreased high frequency interhemispheric functional connectivity between motor speech, premotor and motor areas in the resting state, while higher functional connectivity in the low frequency bands indicates more severe speech disturbances, suggesting that increased interhemispheric and right sided functional connectivity is

The Occurrence, Sources and Spatial Characteristics of Soil Salt and Assessment of Soil Salinization Risk in Yanqi Basin, Northwest China

PubMed Central

Zhaoyong, Zhang; Abuduwaili, Jilili; Yimit, Hamid

2014-01-01

In order to evaluate the soil salinization risk of the oases in arid land of northwest China, we chose a typical oasis-the Yanqi basin as the research area. Then, we collected soil samples from the area and made comprehensive assessment for soil salinization risk in this area. The result showed that: (1) In all soil samples, high variation was found for the amount of Ca2+ and K+, while the other soil salt properties had moderate levels of variation. (2) The land use types and the soil parent material had a significant influence on the amount of salt ions within the soil. (3) Principle component (PC) analysis determined that all the salt ion values, potential of hydrogen (pHs) and ECs fell into four PCs. Among them, PC1 (C1-, Na+, SO4 2-, EC, and pH) and PC2 (Ca2+, K+, Mg2+and total amount of salts) are considered to be mainly influenced by artificial sources, while PC3 and PC4 (CO3 - and HCO3 2-) are mainly influenced by natural sources. (4) From a geo-statistical point of view, it was ascertained that the pH and soil salt ions, such as Ca2+, Mg2+ and HCO3 -, had a strong spatial dependency. Meanwhile, Na+ and Cl- had only a weak spatial dependency in the soil. (5) Soil salinization indicators suggested that the entire area had a low risk of soil salinization, where the risk was mainly due to anthropogenic activities and climate variation. This study can be considered an early warning of soil salinization and alkalization in the Yanqi basin. It can also provide a reference for environmental protection policies and rational utilization of land resources in the arid region of Xinjiang, northwest China, as well as for other oases of arid regions in the world. PMID:25211240

Earth analogs for Martian life - Microbes in evaporites, a new model system for life on Mars

NASA Technical Reports Server (NTRS)

Rothschild, Lynn J.

1990-01-01

It is suggested that 'oases' in which life forms may persist on Mars could occur, by analogy with terrestrial cases, in (1) rocks, as known in endolithic microorganisms, (2) polar ice caps, as seen in snow and ice algae, and (3) volcanic regions, as witnessed in the chemoautotrophs which live in ocean-floor hydrothermal vents. Microorganisms, moreover, have been known to survive in salt crystals, and it has even been shown that organisms can metabolize while encrusted in evaporites. Evaporites which may occur on Mars would be able to attenuate UV light, while remaining more transparent to the 400-700 nm radiation useful in photosynthesis. Suggestions are made for the selection of Martian exobiological investigation sites.

High Resolution Transmission Measurements of the Atmosphere in the Infrared.

DTIC Science & Technology

1978-04-28

modifications to the various spect rorn et r ic installations , cu r r en t l y operated to obtain very hi g h resolution solar spectra in the in f r a...record the solar spectrum in the ~‘. 3000 to ~ 10 , 000 A reg ion , has also been equipped with an InSb detector to recorc various series of spectra near...in~ s c o n c e r n i n & HF , HC 1, also met hy l-ch lor ide (CH 3C1), e t c . . . L t h e r s tudies oased on our i n f r a r e d solar ou se

Fixation times in differentiation and evolution in the presence of bottlenecks, deserts, and oases.

PubMed

Chou, Tom; Wang, Yu

2015-05-07

Cellular differentiation and evolution are stochastic processes that can involve multiple types (or states) of particles moving on a complex, high-dimensional state-space or "fitness" landscape. Cells of each specific type can thus be quantified by their population at a corresponding node within a network of states. Their dynamics across the state-space network involve genotypic or phenotypic transitions that can occur upon cell division, such as during symmetric or asymmetric cell differentiation, or upon spontaneous mutation. Here, we use a general multi-type branching processes to study first passage time statistics for a single cell to appear in a specific state. Our approach readily allows for nonexponentially distributed waiting times between transitions, reflecting, e.g., the cell cycle. For simplicity, we restrict most of our detailed analysis to exponentially distributed waiting times (Poisson processes). We present results for a sequential evolutionary process in which L successive transitions propel a population from a "wild-type" state to a given "terminally differentiated," "resistant," or "cancerous" state. Analytic and numeric results are also found for first passage times across an evolutionary chain containing a node with increased death or proliferation rate, representing a desert/bottleneck or an oasis. Processes involving cell proliferation are shown to be "nonlinear" (even though mean-field equations for the expected particle numbers are linear) resulting in first passage time statistics that depend on the position of the bottleneck or oasis. Our results highlight the sensitivity of stochastic measures to cell division fate and quantify the limitations of using certain approximations (such as the fixed-population and mean-field assumptions) in evaluating fixation times. Published by Elsevier Ltd.

Cryptic oxygen oases: Hypolithic photosynthesis in hydrothermal areas and implications for Archean surface oxidation

NASA Astrophysics Data System (ADS)

Havig, J. R.; Hamilton, T. L.

2017-12-01

Mounting geochemical evidence suggests microorganisms capable of oxygenic photosynthesis (e.g., Cyanobacteria) colonized Archean continental surfaces, driving oxidative weathering of detrital pyrites prior to the 2.5 Ga great oxidation event. Modern terrestrial environments dominated by single-celled phototrophs include hydrothermal systems (e.g., Yellowstone National Park) and hypolithic communities found in arid to hyper-arid deserts (e.g., McMurdo Dry Valleys of Antarctica, Atacama Desert of Chile). Recent work indicates terrestrial hydrothermal systems date back at least as far as 3.5 Ga. Here, we explore phototrophic communities in both hypolithic (sub-sinter) and hydrothermal (subaqueous and subaerial) environments in Yellowstone National Park as potential analogs to Archean continental surfaces. Hydrothermal sub-sinter environments provide ideal conditions for phototrophic microbial communities, including blocking of harmful UV radiation, trapping and retention of moisture, and protection from erosion by rain and surface runoff. Hypolithic communities in geothermal settings were similar in both composition and carbon uptake rates to nearby hot spring communities. We hypothesize that hydrothermal area hypolithic communities represent modern analogs of phototrophic microbial communities that colonized Archean continental surfaces, producing oxygen locally and facilitating microbially-mediated pyrite oxidation prior to the presence of free oxygen in the global atmosphere. These results have implications for oxidation of the early Earth surface, the search for biosignatures in the rock record, as well as for potential harbors of past life on Mars and the search for life on Exoplanets.

Land cover of oases and forest in XinJiang, China retrieved from ASTER data

NASA Astrophysics Data System (ADS)

Buhe, Aosier; Tsuchiya, K.; Kaneko, M.; Ohtaishi, N.; Halik, Mahmut

ASTER aboard NASA’s satellite Terra is a high-resolution multispectral radiometer of 14 bands. The spatial resolution is 15 m in VNIR, 30 m in SWIR and 90 m in TIR spectra, respectively. With the data observed with ASTER, the land cover classification is produced for the Tarim Diversifolious Poplar Protection Area along the Tarim River in the northern Tarim Basin (Taklamakan Desert) in XinJiang, China. The classification of the vegetation (plants) in the arid and semiarid regions using remote-sensing technology is very difficult. Because the cause has low vegetable cover density and the influence of reflection from background soil is large. ASTER data are effective in studying the spectrum characteristics of land cover in arid and semiarid regions. The sensor has several bands in the shortwave infrared wavelength region that is designed for exploration of earth resources and study of the arid and semiarid region natural environment. However, we are not clear combination of which band is the most effective in research of the arid region like the Taklamakan desert in the data of 14 bands of ASTER. The optimum index factor (OIF), based on total variance within bands and correlation coefficient between bands, is a statistical approach to rank all possible three-band combinations. In the process of analyzing the data, the pixel sizes of all the data are converted (layer stacking and re-sampling) into consistent same size of 15 m. The three-band composite with the largest OIF value will have most information (as measured by variance) with the least amount of duplication (as measured by correlation). We used the OIF technique to rank all three-band combinations of ASTER original 14-band data over Tarim River Poplar Protection Area. Our study indicates that RGB color overlay using atmospheric corrected ASTER original bands 2, 3 (VNIR), and 6 (SWIR) has the highest OIF. When NDVI is considered as one ASTER band, highest OIF will have by carrying out bands 3 (VNIR), 4 (SWIR), and NDVI. In this study, we used highest OIF (bands 3, 4, and NDVI) succeeded in extraction of Tarim River Poplar Forest.

Lava Tubes as Martian Analog sites on Hawaii Island

NASA Astrophysics Data System (ADS)

Andersen, Christian; Hamilton, J. C.; Adams, M.

2013-10-01

The existence of geologic features similar to skylights seen in Mars Reconnaissance Orbiter HIRISE imagery suggest Martian lava tube networks. Along with pit craters, these features are evidence of a past era of vulcanism. If these were contemporary with the wet Mars eras, then it is suggestive that any Martian life may have retreated into these subsurface oases. Hawaii island has numerous lava tubes of differing ages, humidity, lengths and sizes that make ideal analog test environments for future Mars exploration. PISCES has surveyed multiple candidate sites during the past summer with a team of University of Hawaii at Hilo student interns. It should be noted that Lunar features have also been similarly discovered via Lunar Reconnaissance Orbiter LROC imagery.

Assessing vegetation response to climatic variations and human activities: spatiotemporal NDVI variations in the Hexi Corridor and surrounding areas from 2000 to 2010

NASA Astrophysics Data System (ADS)

Guan, Qingyu; Yang, Liqin; Guan, Wenqian; Wang, Feifei; Liu, Zeyu; Xu, Chuanqi

2018-03-01

Vegetation cover is a commonly used indicator for evaluating terrestrial environmental conditions, and for revealing environmental evolution and transitions. Spatiotemporal variations in the vegetation cover of the Hexi Corridor and surrounding areas from 2000 to 2010 were investigated using MODIS NDVI data, and the causes of vegetation cover changes were analyzed, considering both climatic variability and human activities. The vegetation cover of the study area increased during 2000-2010. The greenness of the vegetation showed a significant increase from the northwest to the southeast, which was similar to the spatial distribution of the annual precipitation. Variations in vegetation have a close relationship with those in precipitation within the Qilian Mountains region, but the NDVI is negatively correlated with precipitation in oasis areas. Increasing temperatures led to drought, inhibiting vegetation growth in summer; however, increasing temperatures may have also advanced and prolonged the growing periods in spring and autumn. The NDVI showed a slight degradation in March and July, primarily in the Qilian Mountains, and especially the Wushao Mountains. In March, due to low temperatures, the metabolism rate of vegetation was too slow to enable strong plant growth in high elevations of the Qilian Mountains. In July, increasing temperatures enhanced the intensity of transpiration and decreasing precipitation reduced the moisture available to plants, producing a slight degradation of vegetation in the Qilian Mountains. In May and August, the NDVI showed a significant improvement, primarily in the artificial oases and the Qilian Mountains. Abundant precipitation provided the necessary water for plant growth, and suitable temperatures increased the efficiency of photosynthesis, resulting in a significant improvement of vegetation in the Qilian Mountains. The improvement of production technologies, especially in irrigation, has been beneficial to the growth of

Space Radar Image of Pishan, China

NASA Image and Video Library

1999-04-15

This radar image is centered near the small town of Pishan in northwest China, about 280 km (174 miles) southeast of the city of Kashgar along the ancient Silk Route in the Taklamakan desert of the Xinjiang Province. Geologists are using this radar image as a map to study past climate changes and tectonics of the area. The irregular lavender branching patterns in the center of the image are the remains of ancient alluvial fans, gravel deposits that have accumulated at the base of the mountains during times of wetter climate. The subtle striped pattern cutting across the ancient fans are caused by thrusting of the Kun Lun Mountains north. This motion is caused by the continuing plate-tectonic collision of India with Asia. Modern fans show up as large lavender triangles above the ancient fan deposits. Yellow areas on the modern fans are vegetated oases. The gridded pattern results from the alignment of poplar trees that have been planted as wind breaks. The reservoir at the top of the image is part of a sophisticated irrigation system that supplies water to the oases. This image was acquired by the Spaceborne Imaging Radar-C/X-band Synthetic Aperture Radar (SIR-C/X-SAR) aboard the space shuttle Endeavour in April 1994. This image is centered at 37.4 degrees north latitude, 78.3 degrees east longitude and shows an area approximately 50 km by 100 km (31 miles by 62 miles). The colors are assigned to different frequencies and polarizations of the radar as follows: Red is L-band horizontally transmitted, horizontally received; green is L-band horizontally transmitted, vertically received; and blue is C-band horizontally transmitted and vertically received. SIR-C/X-SAR, a joint mission of the German, Italian, and the United States space agencies, is part of NASA's Mission to Planet Earth. http://photojournal.jpl.nasa.gov/catalog/PIA01796

Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

PubMed Central

2011-01-01

Background Until recently, read lengths on the Solexa/Illumina system were too short to reliably assemble transcriptomes without a reference sequence, especially for non-model organisms. However, with read lengths up to 100 nucleotides available in the current version, an assembly without reference genome should be possible. For this study we created an EST data set for the common pond snail Radix balthica by Illumina sequencing of a normalized transcriptome. Performance of three different short read assemblers was compared with respect to: the number of contigs, their length, depth of coverage, their quality in various BLAST searches and the alignment to mitochondrial genes. Results A single sequencing run of a normalized RNA pool resulted in 16,923,850 paired end reads with median read length of 61 bases. The assemblies generated by VELVET, OASES, and SeqMan NGEN differed in the total number of contigs, contig length, the number and quality of gene hits obtained by BLAST searches against various databases, and contig performance in the mt genome comparison. While VELVET produced the highest overall number of contigs, a large fraction of these were of small size (< 200bp), and gave redundant hits in BLAST searches and the mt genome alignment. The best overall contig performance resulted from the NGEN assembly. It produced the second largest number of contigs, which on average were comparable to the OASES contigs but gave the highest number of gene hits in two out of four BLAST searches against different reference databases. A subsequent meta-assembly of the four contig sets resulted in larger contigs, less redundancy and a higher number of BLAST hits. Conclusion Our results document the first de novo transcriptome assembly of a non-model species using Illumina sequencing data. We show that de novo transcriptome assembly using this approach yields results useful for downstream applications, in particular if a meta-assembly of contig sets is used to increase contig

Investigating the Equatorial Gaps in Snowball Earth Sea Glaciers

NASA Astrophysics Data System (ADS)

Spaulding-Astudillo, F.; Ashkenazy, Y.; Tziperman, E.; Abbot, D. S.

2017-12-01

The way photosynthetic life survived the Neoproterozoic Snowball Earth events is still a matter of debate that has deep implications for planetary habitability. One option is that gaps in thick, semi-global ice coverage (sea glaciers) could be maintained at the equator by ocean-ice-atmosphere dynamics. We investigate this idea by modifying a global ocean-thick-marine-ice model developed for modeling Neoproterozoic Snowball Events to account for gaps in thick ice and interactions with atmospheric dynamics. Our hypothesis is that in the parameter regime that allows for sea glacier flow, ice flow will make gaps in the thick ice, and therefore an open ocean solution, less likely. This would suggest that oases in thick ice are a more viable survival mechanism for photosynthetic life during a Snowball Earth event.

Water resource management in river oases along the Tarim River in North-West of China

NASA Astrophysics Data System (ADS)

Kliucininkaite, Lina; Disse, Markus

2013-04-01

Tarim River is one of the longest inland rivers in the world. It flows its water in the northern part of the Taklamakan desert in Xinjiang, North-west of China, which is a very hostile region due its climatic conditions and particularly due to low precipitation and very high evaporation rates. During the past five decades intensive exploitation of water resources, mainly by agricultural activities, has changed the temporal and spatial distribution of them and caused serious environmental problems in the Tarim River Basin. The support measures for oasis management along the Tarim River under climatic and societal changes became the overarching goal of this research. The temperature has risen by nearly 1° C over the past 50 years in the Tarim River Basin so more water was available in the mountainous areas of Xinjiang, leading to an increasing trend of the headstream discharges of the Tarim Basin. Aksu, Hotan and Yarkant Rivers are three tributaries of the Tarim River, as well as its main water suppliers. However, under the condition of water increase with the volume of 25×108 m3 in headstreams in recent 10 years, the water to the mainstream has increased less than 108 m3 (in Alar hydrological station), which is less than 3% of the increased water volume of runoff. Moreover, the region is one of the biggest cotton and other cash crops producers in China. In addition, expansion of urban and, in particular, of irrigation areas have caused higher water consumption at different parts of the river, leading to severe ecological effects on rural areas, especially in the lower reaches. Moreover, it also highly affects groundwater level and quality. The aim of this research is to support decision makers, planners and engineers to find right measures in the area for the further development of the region, as well as adaptation to changing climate. Different scenarios for water resource management, as well as water distribution and allocation in a more efficient and water-saving way, in order to obtain optimal benefit for society, economy and natural environment in a sustainable manner, are the target outcome of this research. Therefore, a more general approach is needed for the macro and whole Tarim River (app. 1321 km long) scale. For addressing water allocation, conjunctive use, water quality issues and surface water interaction with groundwater in this research, GIS-based water-balance model MIKE BASIN (DHI) is employed to meet these objectives for the regional and Tarim River scale.

Herpetofauna associated with palm oases across the Californian-Sonoran transition in northern Baja California, Mexico

Treesearch

Hart Welsh; W. H. Clark; E. Franco-Vizcaíno; J. H. Valdéz-Villavicencio

2010-01-01

Ecological boundaries have been of interest to naturalists since the time of Darwin and Wallace because they are transitional zones on the landscape across which distinct changes occur in constitution of plant and animal communities. In the xeric landscapes of the central Baja California Peninsula, fan palm (Erythea armata and ...

Seasonal and nocturnal activities of the rhinoceros borer (Coleoptera: Scarabaeidae) in the north Saharan oases ecosystems.

PubMed

Ehsine, M'hammed; Belkadhi, Mohamed Sadok; Chaieb, Mohammed

2014-01-01

The rhinoceros borer Oryctes agamemnon Burmeister (Coleoptera: Scarabaeidae) is a date palm insect pest that causes damage to trunk and roots of palm trees in several countries, including Tunisia, the United Arab Emirates (UAE), Oman, and Saudi Arabia. The aim of this study was to monitor the seasonal and nocturnal activities of this beetle. Experiments were performed on a date palm of Rjim Maatoug during a 6-yr period (2004-2007, 2009-2010). Field survey using light traps shows that O. agamemnon is a univoltine, with a single population peak. Adults appear in the field around late May-early June and the population continued to build until maximum numbers are reached between the end of July and the beginning of August in the same year. No adults were found after first 10 d of November. This peak was characterized by female dominance in number. The monitoring of nocturnal activity showed that it starts its activities roughly 40 min after the sundown and continues until approximately 1 h before sunrise. The highest number of trapped beetles was remarked in the two first hours of flight activity, with a dominance of female in the first hour and a dominance of male in the second hour. We remarked that the sex ratio (female:male) of the cumulated number of trapped adults in the different years and nights of survey was in favor of females. © The Author 2014. Published by Oxford University Press on behalf of the Entomological Society of America.

Seasonal and Nocturnal Activities of the Rhinoceros Borer (Coleoptera: Scarabaeidae) in the North Saharan Oases Ecosystems

PubMed Central

Ehsine, M’hammed; Belkadhi, Mohamed Sadok; Chaieb, Mohammed

2014-01-01

Abstract The rhinoceros borer Oryctes agamemnon Burmeister (Coleoptera: Scarabaeidae) is a date palm insect pest that causes damage to trunk and roots of palm trees in several countries, including Tunisia, the United Arab Emirates (UAE), Oman, and Saudi Arabia. The aim of this study was to monitor the seasonal and nocturnal activities of this beetle. Experiments were performed on a date palm of Rjim Maatoug during a 6-yr period (2004–2007, 2009–2010). Field survey using light traps shows that O. agamemnon is a univoltine, with a single population peak. Adults appear in the field around late May–early June and the population continued to build until maximum numbers are reached between the end of July and the beginning of August in the same year. No adults were found after first 10 d of November. This peak was characterized by female dominance in number. The monitoring of nocturnal activity showed that it starts its activities roughly 40 min after the sundown and continues until approximately 1 h before sunrise. The highest number of trapped beetles was remarked in the two first hours of flight activity, with a dominance of female in the first hour and a dominance of male in the second hour. We remarked that the sex ratio (female:male) of the cumulated number of trapped adults in the different years and nights of survey was in favor of females. PMID:25527574

Marine communities on oil platforms in Gabon, West Africa: high biodiversity oases in a low biodiversity environment.

PubMed

Friedlander, Alan M; Ballesteros, Enric; Fay, Michael; Sala, Enric

2014-01-01

The marine biodiversity of Gabon, West Africa has not been well studied and is largely unknown. Our examination of marine communities associated with oil platforms in Gabon is the first scientific investigation of these structures and highlights the unique ecosystems associated with them. A number of species previously unknown to Gabonese waters were recorded during our surveys on these platforms. Clear distinctions in benthic communities were observed between older, larger platforms in the north and newer platforms to the south or closer to shore. The former were dominated by a solitary cup coral, Tubastraea sp., whereas the latter were dominated by the barnacle Megabalanus tintinnabulum, but with more diverse benthic assemblages compared to the northerly platforms. Previous work documented the presence of limited zooxanthellated scleractinian corals on natural rocky substrate in Gabon but none were recorded on platforms. Total estimated fish biomass on these platforms exceeded one ton at some locations and was dominated by barracuda (Sphyraena spp.), jacks (Carangids), and rainbow runner (Elagatis bipinnulata). Thirty-four percent of fish species observed on these platforms are new records for Gabon and 6% are new to tropical West Africa. Fish assemblages closely associated with platforms had distinct amphi-Atlantic affinities and platforms likely extend the distribution of these species into coastal West Africa. At least one potential invasive species, the snowflake coral (Carijoa riisei), was observed on the platforms. Oil platforms may act as stepping stones, increasing regional biodiversity and production but they may also be vectors for invasive species. Gabon is a world leader in terrestrial conservation with a network of protected areas covering >10% of the country. Oil exploration and biodiversity conservation currently co-exist in terrestrial and freshwater ecosystems in Gabon. Efforts to increase marine protection in Gabon may benefit by including oil platforms in the marine protected area design process.

Near-island biological hotspots in barren ocean basins

PubMed Central

Gove, Jamison M.; McManus, Margaret A.; Neuheimer, Anna B.; Polovina, Jeffrey J.; Drazen, Jeffrey C.; Smith, Craig R.; Merrifield, Mark A.; Friedlander, Alan M.; Ehses, Julia S.; Young, Charles W.; Dillon, Amanda K.; Williams, Gareth J.

2016-01-01

Phytoplankton production drives marine ecosystem trophic-structure and global fisheries yields. Phytoplankton biomass is particularly influential near coral reef islands and atolls that span the oligotrophic tropical oceans. The paradoxical enhancement in phytoplankton near an island-reef ecosystem—Island Mass Effect (IME)—was first documented 60 years ago, yet much remains unknown about the prevalence and drivers of this ecologically important phenomenon. Here we provide the first basin-scale investigation of IME. We show that IME is a near-ubiquitous feature among a majority (91%) of coral reef ecosystems surveyed, creating near-island ‘hotspots' of phytoplankton biomass throughout the upper water column. Variations in IME strength are governed by geomorphic type (atoll vs island), bathymetric slope, reef area and local human impacts (for example, human-derived nutrient input). These ocean oases increase nearshore phytoplankton biomass by up to 86% over oceanic conditions, providing basal energetic resources to higher trophic levels that support subsistence-based human populations. PMID:26881874

Balneological Evaluation of the Tafadek Spring, Agadez Region, Niger Republic

NASA Astrophysics Data System (ADS)

Nghargbu, K.; Latour, T.; Ponikowska, I.; Kurowska, E.

2012-04-01

West Africa, particularly Niger Republic is home to thousands of tourists annually. The vast Saharan desert and it's numerous oases in the northern parts of the Republic are a hot attraction on their own. However, in a recent survey of medicinal springs within the West African sub-region, the only hot spring in this country known locally for its therapeutic egress was analyzed. Located about 160km West of Agadez, the "Tafadek" spring with a yield of over 5l/s and temperature of about 50oC, rich in fluoride and silica is a specific water with capacity for application in balneotherapy for the treatment of orthopaedic, rheumatological, neurological, urinary tract infections, and osteoporosis. If the Tafadek spring is developed into a modern health resort promoting balneotherapy, health (balnear) tourism which is non-existent in Niger Republic today could kick start a new dawn in the health/economic development of the nation and the sub-region at large. Keywords: West Africa, Nigeria, Balneotherapy, Health tourism, Spring

Earth observations during STS-58

NASA Image and Video Library

1998-07-28

STS058-92-064 (18 Oct-1 Nov 1993) --- This oblique view, looking northeast from central Egypt, shows great expanses of the sand covered and rocky Western Desert in the foreground (bottom). The dark patches bottom right are the Dakhla Oases on the south side of an escarpment. For centuries camel trains have moved from here to the Nile Valley, seen here as a broad green line winding through the desert. The northern half of Egypt's Nile appears here, from about the latitude of Luxor to the delta. Green colors indicate the small area of crops which feed Egypt's population of 55 million. The Nile Delta is partly obscured by a band of clouds, but can be discerned at the coast as a flattened triangle of green. The smaller triangle close by is the Faiyum Basin, a depression irrigated by water from the Nile. The coast of the Mediterranean Sea appears left.

[Spatial differentiation and impact factors of Yutian Oasis's soil surface salt based on GWR model].

PubMed

Yuan, Yu Yun; Wahap, Halik; Guan, Jing Yun; Lu, Long Hui; Zhang, Qin Qin

2016-10-01

In this paper, topsoil salinity data gathered from 24 sampling sites in the Yutian Oasis were used, nine different kinds of environmental variables closely related to soil salinity were selec-ted as influencing factors, then, the spatial distribution characteristics of topsoil salinity and spatial heterogeneity of influencing factors were analyzed by combining the spatial autocorrelation with traditional regression analysis and geographically weighted regression model. Results showed that the topsoil salinity in Yutian Oasis was not of random distribution but had strong spatial dependence, and the spatial autocorrelation index for topsoil salinity was 0.479. Groundwater salinity, groundwater depth, elevation and temperature were the main factors influencing topsoil salt accumulation in arid land oases and they were spatially heterogeneous. The nine selected environmental variables except soil pH had significant influences on topsoil salinity with spatial disparity. GWR model was superior to the OLS model on interpretation and estimation of spatial non-stationary data, also had a remarkable advantage in visualization of modeling parameters.

Wave field and evanescent waves produced by a sound beam incident on a simulated sediment

NASA Astrophysics Data System (ADS)

Osterhoudt, Curtis F.; Marston, Philip L.; Morse, Scot F.

2005-09-01

When a sound beam in water is incident on a sediment at a sufficiently small grazing angle, the resulting wave field in the sediment is complicated, even for the case of flat, fluidlike sediments. The wave field in the sediment for a sound beam from a simple, unshaded, finite transducer has an evanescent component and diffractive components. These components can interfere to produce a series of nulls outside the spatial region dominated by the evanescent wave field. This situation has been experimentally simulated by using a combination of previously described immiscible liquids [Osterhoudt et al., J. Acoust. Soc. Am. 117, 2483 (2005)]. The spacing between the observed nulls is similar to that seen in a wave-number-integration-based synthesis (using OASES) for a related problem. An analysis of a dephasing distance for evanescent and algebraically decaying components [T .J. Matula and P. L. Marston, J. Acoust. Soc. Am. 97, 1389-1398 (1995)] explains the spacing of the nulls. [Work supported by ONR.

Near-island biological hotspots in barren ocean basins.

PubMed

Gove, Jamison M; McManus, Margaret A; Neuheimer, Anna B; Polovina, Jeffrey J; Drazen, Jeffrey C; Smith, Craig R; Merrifield, Mark A; Friedlander, Alan M; Ehses, Julia S; Young, Charles W; Dillon, Amanda K; Williams, Gareth J

2016-02-16

Phytoplankton production drives marine ecosystem trophic-structure and global fisheries yields. Phytoplankton biomass is particularly influential near coral reef islands and atolls that span the oligotrophic tropical oceans. The paradoxical enhancement in phytoplankton near an island-reef ecosystem--Island Mass Effect (IME)--was first documented 60 years ago, yet much remains unknown about the prevalence and drivers of this ecologically important phenomenon. Here we provide the first basin-scale investigation of IME. We show that IME is a near-ubiquitous feature among a majority (91%) of coral reef ecosystems surveyed, creating near-island 'hotspots' of phytoplankton biomass throughout the upper water column. Variations in IME strength are governed by geomorphic type (atoll vs island), bathymetric slope, reef area and local human impacts (for example, human-derived nutrient input). These ocean oases increase nearshore phytoplankton biomass by up to 86% over oceanic conditions, providing basal energetic resources to higher trophic levels that support subsistence-based human populations.

Sustainable management of river oases along the Tarim River in North-Western China under conditions of climate change

NASA Astrophysics Data System (ADS)

Rumbaur, C.; Thevs, N.; Disse, M.; Ahlheim, M.; Brieden, A.; Cyffka, B.; Doluschitz, R.; Duethmann, D.; Feike, T.; Frör, O.; Gärtner, P.; Halik, Ü.; Hill, J.; Hinnenthal, M.; Keilholz, P.; Kleinschmit, B.; Krysanova, V.; Kuba, M.; Mader, S.; Menz, C.; Othmanli, H.; Pelz, S.; Schroeder, M.; Siew, T. F.; Stender, V.; Stahr, K.; Thomas, F. M.; Welp, M.; Wortmann, M.; Zhao, X.; Chen, X.; Jiang, T.; Zhao, C.; Zhang, X.; Luo, J.; Yimit, H.; Yu, R.

2014-10-01

The Tarim River Basin, located in Xinjiang, NW China, is the largest endorheic river basin of China and one of the largest in whole Central Asia. Due to the extremely arid climate with an annual precipitation of less than 100 mm, the water supply along the Aksu and Tarim River solely depends on river water. This applies for anthropogenic activities (e.g. agriculture) as well as for the natural ecosystems so that both compete for water. The on-going increase of water consumption by agriculture and other human activities in this region has been enhancing the competition for water between human needs and nature. Against this background, 11 German and 6 Chinese universities and research institutes formed the consortium SuMaRiO (www.sumario.de), which aims at gaining a holistic picture of the availability of water resources in the Tarim River Basin and the impacts on anthropogenic activities and natural ecosystems caused by the water distribution within the Tarim River Basin. The discharge of the Aksu River, which is the major tributary to the Tarim, has been increasing over the past 6 decades due to enhanced glacier melt. Alone from 1989 to 2011, the area under agriculture more than doubled. Thereby, cotton became the major crop and there was a shift from small-scale farming to large-scale intensive farming. The major natural ecosystems along the Aksu and Tarim River are riparian ecosystems: Riparian (Tugai) forests, shrub vegetation, reed beds, and other grassland. Within the SuMaRiO Cluster the focus was laid on the Tugai forests, with Populus euphratica as dominant tree, because the most productive and species-rich natural ecosystems can be found among those forests. On sites with groundwater distance of less than 7.5 m the annual increments correlated with river runoffs of the previous year. But, the further downstream along the Tarim River, the more the natural river dynamics ceased, which impacts on the recruitment of Populus euphratica. Household surveys revealed that there is a considerable willingness to pay for conservation of those riparian forests with the mitigation of dust and sandstorms considered as the most important ecosystem service. This interdisciplinary project will result in a decision support tool (DST), build on the participation of regional stakeholders and models based on results and field experiments. This DST finally shall assist stakeholders in balancing the water competition acknowledging the major external effects of any water allocation.

De Novo Transcriptome Analysis of Medicinally Important Plantago ovata Using RNA-Seq

PubMed Central

Kotwal, Shivanjali; Kaul, Sanjana; Sharma, Pooja; Gupta, Mehak; Shankar, Rama; Jain, Mukesh; Dhar, Manoj K.

2016-01-01

Plantago ovata is an economically and medicinally important plant of the family Plantaginaceae. It is used extensively for the production of seed husk for its application in pharmaceutical, food and cosmetic industries. In the present study, the transcriptome of P. ovata ovary was sequenced using Illumina Genome Analyzer platform to characterize the mucilage biosynthesis pathway in the plant. De novo assembly was carried out using Oases followed by velvet. A total of 46,955 non-redundant transcripts (≥100 bp) using ~29 million high-quality paired end reads were generated. Functional categorization of these transcripts revealed the presence of several genes involved in various biological processes like metabolic pathways, mucilage biosynthesis, biosynthesis of secondary metabolites and antioxidants. In addition, simple sequence-repeat motifs, non-coding RNAs and transcription factors were also identified. Expression profiling of some genes involved in mucilage biosynthetic pathway was performed in different tissues of P. ovata using Real time PCR analysis. The study has resulted in a valuable resource for further studies on gene expression, genomics and functional genomics in P. ovata. PMID:26943165

A wedge strategy for mitigation of urban warming in future climate scenarios

NASA Astrophysics Data System (ADS)

Zhao, Lei; Lee, Xuhui; Schultz, Natalie M.

2017-07-01

Heat stress is one of the most severe climate threats to human society in a future warmer world. The situation is further exacerbated in urban areas by urban heat islands (UHIs). Because the majority of world's population is projected to live in cities, there is a pressing need to find effective solutions for the heat stress problem. We use a climate model to investigate the effectiveness of various urban heat mitigation strategies: cool roofs, street vegetation, green roofs, and reflective pavement. Our results show that by adopting highly reflective roofs, almost all the cities in the United States and southern Canada are transformed into white oases - cold islands caused by cool roofs at midday, with an average oasis effect of -3.4 K in the summer for the period 2071-2100, which offsets approximately 80 % of the greenhouse gas (GHG) warming projected for the same period under the RCP4.5 scenario. A UHI mitigation wedge consisting of cool roofs, street vegetation, and reflective pavement has the potential to eliminate the daytime UHI plus the GHG warming.

Hopping Conduction and Bacteria: Transport Properties of Disordered Reaction-Diffusion Systems

NASA Astrophysics Data System (ADS)

Missel, Andrew; Dahmen, Karin

2008-03-01

Reaction-diffusion (RD) systems are used to model everything from the formation of animal coat patterns to the spread of genes in a population to the seasonal variation of plankton density in the ocean. In all of these problems, disorder plays a large role, but determining its effects on transport properties in RD systems has been a challenge. We present here both analytical and numerical studies of a particular disordered RD system consisting of particles which are allowed to diffuse and compete for resources (2A->A) with spatially homogeneous rates, reproduce (A->2A) in certain areas (``oases''), and die (A->0) everywhere else (the ``desert''). In the low oasis density regime, transport is mediated through rare ``hopping events'' in which a small number of particles diffuse through the desert from one oasis to another; the situation is mathematically analogous to hopping conduction in doped semiconductors, and this analogy, along with some ideas from first passage percolation theory, allows us to make some quantitative predictions about the transport properties of the system on a large scale.

Soil and Land Resources Information System (SLISYS-Tarim) for Sustainable Management of River Oases along the Tarim River, China

NASA Astrophysics Data System (ADS)

Othmanli, Hussein; Zhao, Chengyi; Stahr, Karl

2017-04-01

The Tarim River Basin is the largest continental basin in China. The region has extremely continental desert climate characterized by little rainfall <50 mm/a and high potential evaporation >3000 mm/a. The climate change is affecting severely the basin causing soil salinization, water shortage, and regression in crop production. Therefore, a Soil and Land Resources Information System (SLISYS-Tarim) for the regional simulation of crop yield production in the basin was developed. The SLISYS-Tarim consists of a database and an agro-ecological simulation model EPIC (Environmental Policy Integrated Climate). The database comprises relational tables including information about soils, terrain conditions, land use, and climate. The soil data implicate information of 50 soil profiles which were dug, analyzed, described and classified in order to characterize the soils in the region. DEM data were integrated with geological maps to build a digital terrain structure. Remote sensing data of Landsat images were applied for soil mapping, and for land use and land cover classification. An additional database for climate data, land management and crop information were linked to the system, too. Construction of the SLISYS-Tarim database was accomplished by integrating and overlaying the recommended thematic maps within environment of the geographic information system (GIS) to meet the data standard of the global and national SOTER digital database. This database forms appropriate input- and output data for the crop modelling with the EPIC model at various scales in the Tarim Basin. The EPIC model was run for simulating cotton production under a constructed scenario characterizing the current management practices, soil properties and climate conditions. For the EPIC model calibration, some parameters were adjusted so that the modeled cotton yield fits to the measured yield on the filed scale. The validation of the modeling results was achieved in a later step based on remote sensing data. The simulated cotton yield varied according to field management, soil type and salinity level, where soil salinity was the main limiting factor. Furthermore, the calibrated and validated EPIC model was run under several scenarios of climate conditions and land management practices to estimate the effect of climate change on cotton production and sustainability of agriculture systems in the basin. The application of SLISYS-Tarim showed that this database can be a suitable framework for storage and retrieval of soil and terrain data at various scales. The simulation with the EPIC model can assess the impact of climate change and management strategies. Therefore, SLISYS-Tarim can be a good tool for regional planning and serve the decision support system on regional and national scale.

Investigation of geotechnical parameters from CSEM mapping and monitoring data at the oases Kharga and Baris of Sahara desert, Egypt

NASA Astrophysics Data System (ADS)

Hachay, Olga; Khachay, Oleg; Attia, Magdy; Khalil, Ahmed; Mekkawi, Mahmoud; Soliman, Mamdouh

2016-04-01

The site of investigation, oasis Kharga, is located at about 600 km south of Cairo, Egypt; Baris is about 90 km from Kharga also to south and towards more inside the desert. The work was aimed to investigate the rock mass stability at Baris and to estimate the water intake in the Oasis Kharga. A controlled source electromagnetic (CSEM) approach developed earlier by IGF UB RAS (Geophysical Federal Institute, Ural Branch of Russian Academy of Science) is applied to image the ranked deformation levels in the massive structure of the Baris. The wide profile system of observation has been used to monitor the three components of the alternating magnetic field along predefined measuring lines in the study area. Here we can show the first results that we shall continue during some cycles of monitoring. The second part of our work was linked with mapping the massif structure inside the oasis City, where only using our device we could construct the geoelectrical sections for 5 profiles and show the real structure of the water volume and its complicated structure up to 200 meters depth recording the values of real not apparent resistivity. The analytical treatments provided good information about the structure of the rock massive and its rank of degradation, the lateral distribution of the geotechnical heterogeneity, and finally a conclusive outcome about foundation stability. We can conclude that the general dynamic state close to the destruction level within the investigation areas is getting worse over the time; this is reflected in the crack's densities and positions, also on the changes in the lateral distribution of geoelectrical heterogeneity as an indicator of the saturation of the surface rock in the study area with water [1,2]. References 1. Magdy A. Atya, Olga A. Hachay, Mamdouh M. Soliman, Oleg Y. Khachay, Ahmed B. Khalill, Mahmoud Gaballah, Fathy F.Shaaban and Ibrahim A.El. Hemali. CSEM imaging of the near surface dynamics and its impact for foundation stability at quarter 27,15-th of May City, Helwan, Egypt. // Earth sciences research journal, 2010,Vol.14, N1, p.76-87. 2. Magdy A. Atya, Olga A. Hachay, Oleg Y. Khachay, El. Said A. Defining the geotechnical parameters of the medium with use of electromagnetic monitoring data with a control source for fixed frequencies. // Ural geophysical bulletin. 2014,№2,p.4-12.

Topographic heterogeneity influences fish use of an experimentally restored tidal marsh.

PubMed

Larkin, Daniel J; Madon, Sharook P; West, Janelle M; Zedler, Joy B

2008-03-01

Ecological theory predicts that incorporating habitat heterogeneity into restoration sites should enhance diversity and key functions, yet research is limited on how topographic heterogeneity affects higher trophic levels. Our large (8-ha) southern California restoration experiment tested effects of tidal creek networks and pools on trophic structure of salt marsh habitat and high-tide use by two regionally dominant fish species, California killifish (Fundulus parvipinnis) and longjaw mudsucker (Gillichthys mirabilis). We expected tidal creeks to function as "conduits" that would enhance connectivity between subtidal and intertidal habitat and pools to serve as microhabitat "oases" for fishes. Pools did provide abundant invertebrate prey and were a preferred microhabitat for F. parvipinnis, even when the entire marsh was inundated (catch rates were 61% higher in pools). However, G. mirabilis showed no preference for pools. At a larger scale, effects of tidal creek networks were also mixed. Areas containing creeks had 12% higher catch rates of G. mirabilis, but lower catch rates and feeding rates of F. parvipinnis. Collectively, the results indicate that restoring multiple forms of heterogeneity is required to provide opportunities for multiple target consumers.

Ancient Hydrothermal Springs in Arabia Terra, Mars

NASA Technical Reports Server (NTRS)

Oehler, Dorothy Z.; Allen, Carlton C.

2008-01-01

Hydrothermal springs are important astrobiological sites for several reasons: 1) On Earth, molecular phylogeny suggests that many of the most primitive organisms are hyperthermophiles, implying that life on this planet may have arisen in hydrothermal settings; 2) on Mars, similar settings would have supplied energy- and nutrient-rich waters in which early martian life may have evolved; 3) such regions on Mars would have constituted oases of continued habitability providing warm, liquid water to primitive life forms as the planet became colder and drier; and 4) mineralization associated with hydrothermal settings could have preserved biosignatures from those martian life forms. Accordingly, if life ever developed on Mars, then hydrothermal spring deposits would be excellent localities in which to search for morphological or chemical remnants of that life. Previous attempts to identify martian spring deposits from orbit have been general or limited by resolution of available data. However, new satellite imagery from HiRISE has a resolution of 28 cm/pixel which allows detailed analysis of geologic structure and geomorphology. Based on these new data, we report several features in Vernal Crater, Arabia Terra that we interpret as ancient hydrothermal springs.

Active tectonics in southern Xinjiang, China: Analysis of terrace riser and normal fault scarp degradation along the Hotan-Qira fault system

NASA Technical Reports Server (NTRS)

Avouac, Jean-Philippe; Peltzer, Gilles

1993-01-01

The northern piedmont of the western Kunlun mountains (Xinjiang, China) is marked at its easternmost extremity, south of the Hotan-Qira oases, by a set of normal faults trending N50E for nearly 70 km. Conspicuous on Landsat and SPOT images, these faults follow the southeastern border of a deep flexural basin and may be related to the subsidence of the Tarim platform loaded by the western Kunlun northward overthrust. The Hotan-Qira normal fault system vertically offsets the piedmont slope by 70 m. Highest fault scarps reach 20 m and often display evidence for recent reactivations about 2 m high. Successive stream entrenchments in uplifted footwallls have formed inset terraces. We have leveled topographic profiles across fault scarps and transverse abandoned terrace risers. The state of degradation of each terrace edge has been characterized by a degradation coefficient tau, derived by comparison with analytical erosion models. Edges of highest abandoned terraces yield a degradation coefficient of 33 +/- 4 sq.m. Profiles of cumulative fault scarps have been analyzed in a similar way using synthetic profiles generated with a simple incremental fault scarp model.

Evolution of the human-water relationships in the Heihe River basin in the past 2000 years

NASA Astrophysics Data System (ADS)

Lu, Z.; Wei, Y.; Xiao, H.; Zou, S.; Xie, J.; Ren, J.; Western, A.

2015-05-01

This paper quantitatively analyzed the evolution of human-water relationships in the Heihe River basin of northern China over the past 2000 years by reconstructing the catchment water balance by partitioning precipitation into evapotranspiration and runoff. The results provided the basis for investigating the impacts of societies on hydrological systems. Based on transition theory and the rates of changes of the population, human water consumption and the area of natural oases, the evolution of human-water relationships can be divided into four stages: predevelopment (206 BC-AD 1368), take-off (AD 1368-1949), acceleration (AD 1949-2000), and the start of a rebalancing between human and ecological needs (post AD 2000). Our analysis of the evolutionary process revealed that there were large differences in the rate and scale of changes and the period over which they occurred. The transition of the human-water relationship had no fixed pattern. This understanding of the dynamics of the human-water relationship will assist policy makers in identifying management practices that require improvement by understanding how today's problems were created in the past, which may lead to more sustainable catchment management in the future.

Magmatic Intrusions and a Hydrothermal Origin for Fluvial Valleys on Mars

NASA Technical Reports Server (NTRS)

Gulick, Virginia C

1998-01-01

Numerical models of Martian hydrothermal systems demonstrate that systems associated with magmatic intrusions greater than several hundred cubic kilometers can provide sufficient groundwater outflow to form the observed fluvial valleys, if subsurface permeability exceeds about 1.0 darcy. Groundwater outflow increases with increasing intrusion volume and subsurface permeability and is relatively insensitive to intrusion depth and subsurface porosity within the range considered here. Hydrothermally-derived fluids can melt through 1 to 2 km thick ice-rich permafrost layers in several thousand years. Hydrothermal systems thus provide a viable alternative to rainfall for providing surface water for valley formation. This mechanism can form fluvial valleys not only during the postulated early warm, wet climatic epoch, but also during more recent epochs when atmospheric conditions did not favor atmospheric cycling of water. The clustered distribution of the valley networks on a given geologic surface or terrain unit of Mars may also be more compatible with localized, hydrothermally-driven groundwater outflow than regional rainfall. Hydrothermal centers on Mars may have provided appropriate environments for the initiation of life or final oases for the long-term persistence of life.

Estimating irrigation water use and withdrawal of ground water on the High Plains, U.S.A.

USGS Publications Warehouse

Wray, J.R.

1982-01-01

In four decades following the Dust Bowl days of the 1930's, extensive areas of dry farming and rangeland on the semi-arid U.S. High Plains were transformed into a vast region of irrigated oases, producing meat and grain for much of the world. The agricultural economy has experienced such rapid growth in part because of the availability of ground water and because of development of new irrigation technology to use that water for agriculture. However, more water is being used than is being replaced. To estimate both the volume of water withdrawn and the regional scope of the problem a technique has been developed that combines multispectral data from Earth-orbiting satellite with known pumpage data for the same growing season. The location and extent of irrigated cropland-some with different crops watered at different times-is inventoried using computer-assisted analysis of the data from Landsat. The amount of water used is estimated by multiplying and summing surface area of irrigated agriculture and the average measured pumpage from sampled sites. Published findings to date are cited in the Selected References. All suggest transferability of a promising technology to the study of land transformation processes elsewhere. ?? 1983.

Satellite-based estimates of groundwater depletion in the Badain Jaran Desert, China

NASA Astrophysics Data System (ADS)

Jiao, Jiu Jimmy; Zhang, Xiaotao; Wang, Xusheng

2015-03-01

Despite prevailing dry conditions, groundwater-fed lakes are found among the earth's tallest sand dunes in the Badain Jaran Desert, China. Indirect evidence suggests that some lakes are shrinking. However, relatively few studies have been carried out to assess the regional groundwater conditions and the fate of the lakes due to the remoteness and severity of the desert environment. Here we use satellite information to demonstrate an ongoing slow decrease in both lake level and groundwater storage. Specifically, we use Ice, Cloud, and land Elevation Satellite altimetry data to quantify water levels of the lakes and show overall decreases from 2003 to 2009. We also use water storage changes from the Gravity Recovery and Climate Experiment and simulated soil and water changes from the Global Land Data Assimilation System to demonstrate long-term groundwater depletion in the desert. Rainfall increase driven by climate change has increased soil water and groundwater storage to a certain degree but not enough to compensate for the long-term decline. If countermeasures are not taken to control the pumping, many lakes will continue to shrink, causing an ecological and environmental disaster in the fragile desert oases.

Water use sources of desert riparian Populus euphratica forests.

PubMed

Si, Jianhua; Feng, Qi; Cao, Shengkui; Yu, Tengfei; Zhao, Chunyan

2014-09-01

Desert riparian forests are the main body of natural oases in the lower reaches of inland rivers; its growth and distribution are closely related to water use sources. However, how does the desert riparian forest obtains a stable water source and which water sources it uses to effectively avoid or overcome water stress to survive? This paper describes an analysis of the water sources, using the stable oxygen isotope technique and the linear mixed model of the isotopic values and of desert riparian Populus euphratica forests growing at sites with different groundwater depths and conditions. The results showed that the main water source of Populus euphratica changes from water in a single soil layer or groundwater to deep subsoil water and groundwater as the depth of groundwater increases. This appears to be an adaptive selection to arid and water-deficient conditions and is a primary reason for the long-term survival of P. euphratica in the desert riparian forest of an extremely arid region. Water contributions from the various soil layers and from groundwater differed and the desert riparian P. euphratica forests in different habitats had dissimilar water use strategies.

An object-based approach to weather analysis and its applications

NASA Astrophysics Data System (ADS)

Troemel, Silke; Diederich, Malte; Horvath, Akos; Simmer, Clemens; Kumjian, Matthew

2013-04-01

The research group 'Object-based Analysis and SEamless prediction' (OASE) within the Hans Ertel Centre for Weather Research programme (HErZ) pursues an object-based approach to weather analysis. The object-based tracking approach adopts the Lagrange perspective by identifying and following the development of convective events over the course of their lifetime. Prerequisites of the object-based analysis are a high-resolved observational data base and a tracking algorithm. A near real-time radar and satellite remote sensing-driven 3D observation-microphysics composite covering Germany, currently under development, contains gridded observations and estimated microphysical quantities. A 3D scale-space tracking identifies convective rain events in the dual-composite and monitors the development over the course of their lifetime. The OASE-group exploits the object-based approach in several fields of application: (1) For a better understanding and analysis of precipitation processes responsible for extreme weather events, (2) in nowcasting, (3) as a novel approach for validation of meso-γ atmospheric models, and (4) in data assimilation. Results from the different fields of application will be presented. The basic idea of the object-based approach is to identify a small set of radar- and satellite derived descriptors which characterize the temporal development of precipitation systems which constitute the objects. So-called proxies of the precipitation process are e.g. the temporal change of the brightband, vertically extensive columns of enhanced differential reflectivity ZDR or the cloud top temperature and heights identified in the 4D field of ground-based radar reflectivities and satellite retrievals generated by a cell during its life time. They quantify (micro-) physical differences among rain events and relate to the precipitation yield. Analyses on the informative content of ZDR columns as precursor for storm evolution for example will be presented to demonstrate

Water-Lean Solvents for Post-Combustion CO 2 Capture: Fundamentals, Uncertainties, Opportunities, and Outlook

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heldebrant, David J.; Koech, Phillip K.; Glezakou, Vassiliki-Alexandra

Capturing CO2 from the exhaust of coal-fired power plants is a daunting task, requiring selective removal from a dilute gas stream of millions of pounds per hour of a molecule that is considered thermodynamically and kinetically stable. There are commercial solvent technologies containing proprietary blends of aqueous amines such as Econamine FG+, KS-1, Oase® Blue, and Cansolv that may achieve this task, though only one of them has been deployed at scale, albeit in the natural gas industry.1 The Achilles’ heel of amine blends is the energy loss involved with regenerating the solvent, i.e., boiling and condensing millions of poundsmore » of water per hour. This energy loss translates to a sizeable parasitic load on a coal-fired plant, requiring the plant to burn more coal to get back to its nameplate capacity.2 Unsurprisingly, a considerable amount of research has focused on the design of more efficient technologies to lessen this parasitic load. Liquid systems are the lowest hanging fruit from a time and cost perspective, as they have the potential to use aqueous amine infrastructure, with potential for more rapid ascent up the development ladder than porous solids or membranes.« less

Isotopic evidence for oxygenated Mesoarchaean shallow oceans

NASA Astrophysics Data System (ADS)

Eickmann, Benjamin; Hofmann, Axel; Wille, Martin; Bui, Thi Hao; Wing, Boswell A.; Schoenberg, Ronny

2018-02-01

Mass-independent fractionation of sulfur isotopes (MIF-S) in Archaean sediments results from photochemical processing of atmospheric sulfur species in an oxygen-depleted atmosphere. Geological preservation of MIF-S provides evidence for microbial sulfate reduction (MSR) in low-sulfate Paleoarchaean (3.8-3.2 billion years ago (Ga)) and Neoarchaean (2.8-2.5 Ga) oceans, but the significance of MSR in Mesoarchaean (3.2-2.8 Ga) oceans is less clear. Here we present multiple sulfur and iron isotope data of early diagenetic pyrites from 2.97-Gyr-old stromatolitic dolomites deposited in a tidal flat environment of the Nsuze Group, Pongola Supergroup, South Africa. We identified consistently negative Δ33S values in pyrite, which indicates photochemical reactions under anoxic atmospheric conditions, but large mass-dependent sulfur isotope fractionations of 30‰ in δ34S, identifying active MSR. Negative pyrite δ56Fe values (-1.31 to -0.88‰) record Fe oxidation in oxygen-bearing shallow oceans coupled with biogenic Fe reduction during diagenesis, consistent with the onset of local Fe cycling in oxygen oases 3.0 Ga. We therefore suggest the presence of oxygenated near-shore shallow-marine environments with ≥5 μM sulfate at this time, in spite of the clear presence of an overall reduced Mesoarchaean atmosphere.

Unveiling the status of alien animals in the arid zone of Asia

PubMed Central

Zhang, Lyubing

2016-01-01

Biological invasion is one of the most threatening factors for biodiversity conservation. Lacking information on alien species in certain regions of the world hampers a balanced understanding of invasion processes and efficient data exchange among stakeholders. Current knowledge gaps are in need of urgent concern. We therefore conducted a review on alien animals in Xinjiang, an unknown region of invasion ecology. Xinjiang lies in the heartland of the Asian continent, covering an area of 1,664,900 km2. In the past 64 years, 128 alien animal species were recorded in this region, 39% of which became invasive and led to loss of native biodiversity. Most of these species were introduced through diversification of local agriculture and aquaculture. This process was aggravated by improving transportation and flourishing trade. Multiple linear regression models and correlation analysis were run for explaining influence of environmental and anthropogenic factors on status of alien animals: economically developed areas with abundant water resource, oases in particular, were prone to be hotspots of alien animal species in this arid and semi-arid region. This study also revealed that taxonomically biased and lagged research were critical problems that impeded studies on biological invasions in Xinjiang, and proposed feasible solutions. PMID:26793423

A wedge strategy for mitigation of urban warming in future climate scenarios

NASA Astrophysics Data System (ADS)

Zhao, L.

2016-12-01

Heat stress is one of the most severe climate threats to the human society in a future warmer world. The situation is further compounded in urban areas by the urban heat island (UHI). Because the majority of the world's population is projected to live in cities, there is a pressing need to find effective solutions for the high temperature problem. It is now recognized that in addition to the traditional emphasis on preparedness to cope with heat stress, these solutions should include active modifications of urban land form to reduce urban temperatures. Here we use an urban climate model to investigate the effectiveness of these active methods in mitigating the urban heat, both individually and collectively. By adopting highly reflective roofs citywide, almost all the cities in the USA and in southern Canada are transformed into cold islands or "white oases" where the daytime surface temperatures are lower than those in the surrounding rural land. The average oasis effect is -3.4 ± 0.3 K (mean ± 1 standard error) for the period 2071-2100 under the RCP4.5 scenario. A UHI mitigation wedge strategy consisting of cool roof, street vegetation and reflective pavement has the potential to eliminate the daytime UHI plus the greenhouse gas induced warming.

Microbial Community Structure and the Persistence of Cyanobacterial Populations in Salt Crusts of the Hyperarid Atacama Desert from Genome-Resolved Metagenomics

DOE PAGES

Finstad, Kari M.; Probst, Alexander J.; Thomas, Brian C.; ...

2017-07-28

Although once thought to be devoid of biology, recent studies have identified salt deposits as oases for life in the hyperarid Atacama Desert. To examine spatial patterns of microbial species and key nutrient sources, we genomically characterized 26 salt crusts from three sites along a fog gradient. The communities are dominated by a large variety of Halobacteriales and Bacteroidetes, plus a few algal and Cyanobacterial species. CRISPR locus analysis suggests the distribution of a single Cyanobacterial population among all sites. This is in stark contrast to the extremely high sample specificity of most other community members. Only present at themore » highest moisture site is a genomically characterized Thermoplasmatales archaeon (Marine Group II) and six Nanohaloarchaea, one of which is represented by a complete genome. Parcubacteria (OD1) and Saccharibacteria (TM7), not previously reported from hypersaline environments, were found at low abundances. We found no indication of a N 2 fixation pathway in the communities, suggesting acquisition of bioavailable nitrogen from atmospherically derived nitrate. Samples cluster by site based on bacterial and archaeal abundance patterns and photosynthetic capacity decreases with increasing distance from the ocean. We conclude that moisture level, controlled by coastal fog intensity, is the strongest driver of community membership.« less

Microbial Community Structure and the Persistence of Cyanobacterial Populations in Salt Crusts of the Hyperarid Atacama Desert from Genome-Resolved Metagenomics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Finstad, Kari M.; Probst, Alexander J.; Thomas, Brian C.

Although once thought to be devoid of biology, recent studies have identified salt deposits as oases for life in the hyperarid Atacama Desert. To examine spatial patterns of microbial species and key nutrient sources, we genomically characterized 26 salt crusts from three sites along a fog gradient. The communities are dominated by a large variety of Halobacteriales and Bacteroidetes, plus a few algal and Cyanobacterial species. CRISPR locus analysis suggests the distribution of a single Cyanobacterial population among all sites. This is in stark contrast to the extremely high sample specificity of most other community members. Only present at themore » highest moisture site is a genomically characterized Thermoplasmatales archaeon (Marine Group II) and six Nanohaloarchaea, one of which is represented by a complete genome. Parcubacteria (OD1) and Saccharibacteria (TM7), not previously reported from hypersaline environments, were found at low abundances. We found no indication of a N 2 fixation pathway in the communities, suggesting acquisition of bioavailable nitrogen from atmospherically derived nitrate. Samples cluster by site based on bacterial and archaeal abundance patterns and photosynthetic capacity decreases with increasing distance from the ocean. We conclude that moisture level, controlled by coastal fog intensity, is the strongest driver of community membership.« less

Next Generation Sequencing Identifies Five Major Classes of Potentially Therapeutic Enzymes Secreted by Lucilia sericata Medical Maggots.

PubMed

Franta, Zdeněk; Vogel, Heiko; Lehmann, Rüdiger; Rupp, Oliver; Goesmann, Alexander; Vilcinskas, Andreas

2016-01-01

Lucilia sericata larvae are used as an alternative treatment for recalcitrant and chronic wounds. Their excretions/secretions contain molecules that facilitate tissue debridement, disinfect, or accelerate wound healing and have therefore been recognized as a potential source of novel therapeutic compounds. Among the substances present in excretions/secretions various peptidase activities promoting the wound healing processes have been detected but the peptidases responsible for these activities remain mostly unidentified. To explore these enzymes we applied next generation sequencing to analyze the transcriptomes of different maggot tissues (salivary glands, gut, and crop) associated with the production of excretions/secretions and/or with digestion as well as the rest of the larval body. As a result we obtained more than 123.8 million paired-end reads, which were assembled de novo using Trinity and Oases assemblers, yielding 41,421 contigs with an N50 contig length of 2.22 kb and a total length of 67.79 Mb. BLASTp analysis against the MEROPS database identified 1729 contigs in 577 clusters encoding five peptidase classes (serine, cysteine, aspartic, threonine, and metallopeptidases), which were assigned to 26 clans, 48 families, and 185 peptidase species. The individual enzymes were differentially expressed among maggot tissues and included peptidase activities related to the therapeutic effects of maggot excretions/secretions.

Microbial Community Structure and the Persistence of Cyanobacterial Populations in Salt Crusts of the Hyperarid Atacama Desert from Genome-Resolved Metagenomics.

PubMed

Finstad, Kari M; Probst, Alexander J; Thomas, Brian C; Andersen, Gary L; Demergasso, Cecilia; Echeverría, Alex; Amundson, Ronald G; Banfield, Jillian F

2017-01-01

Although once thought to be devoid of biology, recent studies have identified salt deposits as oases for life in the hyperarid Atacama Desert. To examine spatial patterns of microbial species and key nutrient sources, we genomically characterized 26 salt crusts from three sites along a fog gradient. The communities are dominated by a large variety of Halobacteriales and Bacteroidetes, plus a few algal and Cyanobacterial species. CRISPR locus analysis suggests the distribution of a single Cyanobacterial population among all sites. This is in stark contrast to the extremely high sample specificity of most other community members. Only present at the highest moisture site is a genomically characterized Thermoplasmatales archaeon (Marine Group II) and six Nanohaloarchaea, one of which is represented by a complete genome. Parcubacteria (OD1) and Saccharibacteria (TM7), not previously reported from hypersaline environments, were found at low abundances. We found no indication of a N 2 fixation pathway in the communities, suggesting acquisition of bioavailable nitrogen from atmospherically derived nitrate. Samples cluster by site based on bacterial and archaeal abundance patterns and photosynthetic capacity decreases with increasing distance from the ocean. We conclude that moisture level, controlled by coastal fog intensity, is the strongest driver of community membership.

Karst tiankengs as refugia for indigenous tree flora amidst a degraded landscape in southwestern China.

PubMed

Su, Yuqiao; Tang, Qiming; Mo, Fuyan; Xue, Yuegui

2017-06-26

We conducted floristic and community analyses to compare the floristic composition, forest structure, taxonomic richness, and species diversity between two tiankeng (large doline, or sinkhole) habitats and two outside-tiankeng habitats of forest fragments in a degraded karst area in southwestern China. We found remarkably higher taxonomic richness in the tiankeng habitats than in the outside-tiankeng habitats at the species, generic, and familial levels. The inside-tiankeng habitats had higher floristic diversity but lower dominance. The remarkably higher uniqueness at all taxonomic levels and the much larger tree size in the two tiankeng habitats than in the outside-tiankeng habitats demonstrated the old-growth and isolated nature of the tiankeng flora. Plot-scale species richness, Shannon-Wiener index, Pielou's evenness, and Berger-Parker dominance significantly differed across habitats. Heterogeneity in floristic composition at the species, generic, and familial levels was extremely significant across habitats. In pairwise comparisons, except for the Chuandong Tiankeng-Shenmu Tiankeng pair, all the pairs showed significant between-habitat heterogeneity in floristic composition. Our results suggest that as oases amidst the degraded karst landscape, tiankengs serve as modern refugia that preserve old-growth forest communities with their rich floristic diversity, and can provide a model for habitat conservation and forest restoration in that area.

Impact of earthquakes on agriculture during the Roman-Byzantine period from pollen records of the Dead Sea laminated sediment

NASA Astrophysics Data System (ADS)

Leroy, Suzanne A. G.; Marco, Shmuel; Bookman, Revital; Miller, Charlotte S.

2010-03-01

The Dead Sea region holds the archives of a complex relationship between an ever-changing nature and ancient civilisations. Regional pollen diagrams show a Roman-Byzantine period standing out in the recent millennia by its wetter climate that allowed intensive arboriculture. During that period, the Dead Sea formed laminites that display mostly a seasonal character. A multidisciplinary study focused on two earthquakes, 31 BC and AD 363, recorded as seismites in the Ze'elim gully A unit III which has been well dated by radiocarbon in a previous study. The sampling of the sediment was done at an annual resolution starting from a few years before and finishing a decade after each earthquake. A clear drop in agricultural indicators (especially Olea and cereals) is shown. These pollen indicators mostly reflect human activities in the Judean Hills and coastal oases. Agriculture was disturbed in large part of the rift valley where earthquake damage affected irrigation and access to the fields. It took 4 to 5 yr to resume agriculture to previous conditions. Earthquakes must be seen as contributors to factors damaging societies. If combined with other factors such as climatic aridification, disease epidemics and political upheaval, they may lead to civilisation collapse.

Archaeal ammonia oxidizers respond to soil factors at smaller spatial scales than the overall archaeal community does in a high Arctic polar oasis.

PubMed

Banerjee, Samiran; Kennedy, Nabla; Richardson, Alan E; Egger, Keith N; Siciliano, Steven D

2016-06-01

Archaea are ubiquitous and highly abundant in Arctic soils. Because of their oligotrophic nature, archaea play an important role in biogeochemical processes in nutrient-limited Arctic soils. With the existing knowledge of high archaeal abundance and functional potential in Arctic soils, this study employed terminal restriction fragment length polymorphism (t-RFLP) profiling and geostatistical analysis to explore spatial dependency and edaphic determinants of the overall archaeal (ARC) and ammonia-oxidizing archaeal (AOA) communities in a high Arctic polar oasis soil. ARC communities were spatially dependent at the 2-5 m scale (P < 0.05), whereas AOA communities were dependent at the ∼1 m scale (P < 0.0001). Soil moisture, pH, and total carbon content were key edaphic factors driving both the ARC and AOA community structure. However, AOA evenness had simultaneous correlations with dissolved organic nitrogen and mineral nitrogen, indicating a possible niche differentiation for AOA in which dry mineral and wet organic soil microsites support different AOA genotypes. Richness, evenness, and diversity indices of both ARC and AOA communities showed high spatial dependency along the landscape and resembled scaling of edaphic factors. The spatial link between archaeal community structure and soil resources found in this study has implications for predictive understanding of archaea-driven processes in polar oases.

Habitability of Mars: hyperthermophiles in permafrost

NASA Astrophysics Data System (ADS)

Gilichinsky, David; Rivkina, Elizaveta; Vishnivetskaya, Tatiana; Felipe, Gomez; Mironov, Vasilii; Blamey, Jenny; Ramos, Miguel; Ángel de Pablo, Miguel; Castro, Miguel; Boehmwald, Freddy

This is a first microbiological study of volcanic permafrost carried out on Kluchevskaya volcano group (Kamchatka Peninsula) and Deception Island (Antarctica). By culture-and culture-independent methods we showed the presence of viable hyper(thermophilic) microorganisms and their genes within volcanic permafrost. The optimal temperature for sulfide producing bacteria was 65, whereas acetogens and methanogens were able to produce acetate and methane at temperatures up to 75o C, while sulphur-reducers showed optimal growth at 85-92o C. Hy-per(thermophiles) were never found in permafrost outside the volcanic areas before. The only way they are to appear within a frozen material is a concurrent deposition during the eruption, together with products associated with volcano heated subsurface geothermal oases. The elo-quent evidence to the hypothesis is the presence among clones of the sequences affiliated with (hyper)thermophilic bacteria, both, aerobic and anaerobic, in the environmental DNA derived from ashes freshly deposited on snow in close proximity to volcano Shiveluch (Kamchatka) and aerobic bacteria incubated at 80o C from ashes freshly deposited on the top of Llaima Vol-cano glacier (Andes). Thus, in the areas of active volcanism the catastrophic geological events transports the life from the depths to the surface and this life from high-temperature ecological niches might survive in permafrost over a long period of time. The results obtained give insights for habitability of Mars. Terrestrial permafrost represents a possible ecosystem for Mars as an Earth-like cryogenic planet. But permafrost on Earth and Mars vary in age, from a few million years on Earth to a few billion years on Mars. Because such difference in age, the longevity of life forms preserved within terrestrial permafrost may only serve as an approximate model for Mars. On the other hand, numerous ancient extinct volcanoes are known on Mars. Their past eruptions periodically burn-through the

The oxygenation of the atmosphere and oceans

PubMed Central

Holland, Heinrich D

2006-01-01

The last 3.85 Gyr of Earth history have been divided into five stages. During stage 1 (3.85–2.45 Gyr ago (Ga)) the atmosphere was largely or entirely anoxic, as were the oceans, with the possible exception of oxygen oases in the shallow oceans. During stage 2 (2.45–1.85 Ga) atmospheric oxygen levels rose to values estimated to have been between 0.02 and 0.04 atm. The shallow oceans became mildly oxygenated, while the deep oceans continued anoxic. Stage 3 (1.85–0.85 Ga) was apparently rather ‘boring’. Atmospheric oxygen levels did not change significantly. Most of the surface oceans were mildly oxygenated, as were the deep oceans. Stage 4 (0.85–0.54 Ga) saw a rise in atmospheric oxygen to values not much less than 0.2 atm. The shallow oceans followed suit, but the deep oceans were anoxic, at least during the intense Neoproterozoic ice ages. Atmospheric oxygen levels during stage 5 (0.54 Ga–present) probably rose to a maximum value of ca 0.3 atm during the Carboniferous before returning to its present value. The shallow oceans were oxygenated, while the oxygenation of the deep oceans fluctuated considerably, perhaps on rather geologically short time-scales. PMID:16754606

The Moon in the Russian scientific-educational project: Kazan-GeoNa-2010

NASA Astrophysics Data System (ADS)

Gusev, A.; Kitiashvili, I.; Petrova, N.

Historically thousand-year Kazan city and the two-hundred-year Kazan university Russia carry out a role of the scientific-organizational and cultural-educational center of Volga region For the further successful development of educational and scientific-educational activity of the Russian Federation the Republic Tatarstan Kazan is offered the national project - the International Center of the Science and the Internet of Technologies bf GeoNa bf Geo metry of bf Na ture - bf GeoNa is developed - wisdom enthusiasm pride grandeur which includes a modern complex of conference halls up to 4 thousand places the Center the Internet of Technologies 3D Planetarium - development of the Moon PhysicsLand an active museum of natural sciences an oceanarium training a complex Spheres of Knowledge botanical and landscape oases In center bf GeoNa will be hosted conferences congresses fundamental scientific researches of the Moon scientific-educational actions presentation of the international scientific programs on lunar research modern lunar databases exhibition Hi-tech of the equipment the extensive cultural-educational tourist and cognitive programs Center bf GeoNa will enable scientists and teachers of the Russian universities to join to advanced achievements of a science information technologies to establish scientific communications with foreign colleagues in sphere of the high technology and educational projects with world space centers

Effects of shallow water table, salinity and frequency of irrigation water on the date palm water use

NASA Astrophysics Data System (ADS)

Askri, Brahim; Ahmed, Abdelkader T.; Abichou, Tarek; Bouhlila, Rachida

2014-05-01

In southern Tunisia oases, waterlogging, salinity, and water shortage represent serious threats to the sustainability of irrigated agriculture. Understanding the interaction between these problems and their effects on root water uptake is fundamental for suggesting possible options of improving land and water productivity. In this study, HYDRUS-1D model was used in a plot of farmland located in the Fatnassa oasis to investigate the effects of waterlogging, salinity, and water shortage on the date palm water use. The model was calibrated and validated using experimental data of sap flow density of a date palm, soil hydraulic properties, water table depth, and amount of irrigation water. The comparison between predicted and observed data for date palm transpiration rates was acceptable indicating that the model could well estimate water consumption of this tree crop. Scenario simulations were performed with different water table depths, and salinities and frequencies of irrigation water. The results show that the impacts of water table depth and irrigation frequency vary according to the season. In summer, high irrigation frequency and shallow groundwater are needed to maintain high water content and low salinity of the root-zone and therefore to increase the date palm transpiration rates. However, these factors have no significant effect in winter. The results also reveal that irrigation water salinity has no significant effect under shallow saline groundwater.

Next Generation Sequencing Identifies Five Major Classes of Potentially Therapeutic Enzymes Secreted by Lucilia sericata Medical Maggots

PubMed Central

Franta, Zdeněk; Vogel, Heiko; Lehmann, Rüdiger; Rupp, Oliver; Goesmann, Alexander; Vilcinskas, Andreas

2016-01-01

Lucilia sericata larvae are used as an alternative treatment for recalcitrant and chronic wounds. Their excretions/secretions contain molecules that facilitate tissue debridement, disinfect, or accelerate wound healing and have therefore been recognized as a potential source of novel therapeutic compounds. Among the substances present in excretions/secretions various peptidase activities promoting the wound healing processes have been detected but the peptidases responsible for these activities remain mostly unidentified. To explore these enzymes we applied next generation sequencing to analyze the transcriptomes of different maggot tissues (salivary glands, gut, and crop) associated with the production of excretions/secretions and/or with digestion as well as the rest of the larval body. As a result we obtained more than 123.8 million paired-end reads, which were assembled de novo using Trinity and Oases assemblers, yielding 41,421 contigs with an N50 contig length of 2.22 kb and a total length of 67.79 Mb. BLASTp analysis against the MEROPS database identified 1729 contigs in 577 clusters encoding five peptidase classes (serine, cysteine, aspartic, threonine, and metallopeptidases), which were assigned to 26 clans, 48 families, and 185 peptidase species. The individual enzymes were differentially expressed among maggot tissues and included peptidase activities related to the therapeutic effects of maggot excretions/secretions. PMID:27119084

Wearing the marks of violence: Unusual trauma patterning at Coyo Oriental, Northern Chile.

PubMed

Torres-Rouff, Christina; Hubbe, Mark; Pestle, William J

2018-05-02

In this article, we present analyses of traumatic injury data from the Middle Period Coyo Oriental cemetery in northern Chile. We test a series of hypotheses about the role of sex, foreign contact, ritual access, and temporal shifts, in the patterning of cranial trauma in this cemetery. Two hundred and twenty-seven crania from Coyo Oriental were analyzed using standard bioarcheological methods to determine sex and age as well as the presence of cranial fractures. We also documented the presence of Tiwanaku goods, objects tied to warfare or hunting, camelid offerings, snuff paraphernalia, and items related to mining. We recorded 98 cranial fractures in the sample with 94.9% (93/98) on the anterior of the cranium. No significant differences are observed in the prevalence of trauma by sex, type of grave, or date. However, Coyo Oriental's trauma prevalence is two to three times higher than other Middle Period sites. The prevalence and location of these injuries suggest that conflict at Coyo Oriental, while of the same nature, was at a scale different to that seen elsewhere in the oases. We posit here that the development of social hierarchy, population growth, expansive social networks, and foreign contact that characterized the Middle Period may have resulted in a need for social control among the emergent elites of the region. © 2018 Wiley Periodicals, Inc.

Migrating birds’ use of stopover habitat in the southwestern United States

USGS Publications Warehouse

Ruth, Janet M.; Diehl, R.H.; Felix, R.K.

2012-01-01

In the arid Southwest, migratory birds are known to use riparian stopover habitats; we know less about how migrants use other habitat types during migratory stopover. Using radar data and satellite land-cover data, we determined the habitats with which birds are associated during migration stopover. Bird densities differed significantly by habitat type at all sites in at least one season. In parts of Arizona and New Mexico upland forest supported high densities of migrants, especially in fall. Developed habitat, in areas with little upland forest, also supported high densities of migrants. Scrub/shrub and grassland habitats supported low to intermediate densities, but because these habitat types dominate the Southwestern landscape, they may provide stopover habitat for larger numbers of migratory birds than previously recognized. These results are complicated by continuing challenges related to target identity (i.e., distinguishing among birds, arthropods and bats). Our results suggest that it is too simplistic to (1) consider the arid West as a largely inhospitable landscape in which there are only relatively small oases of habitat that provide the resources needed by all migrants, (2) think of western riparian and upland forests as supporting the majority of migrants in all cases, and (3) consider a particular habitat unimportant for stopover solely on the basis of low densities of migrants.

Importance of determining the climatic domains of sheep breeds.

PubMed

Petit, D; Boujenane, I

2018-07-01

The main purpose of the study was to compare the capacity of the major sheep breeds in Morocco to cope with climate changes through the ranges of several climate parameters in which they can be found. We first delimitated the climatic 'domains' of each breed by constructing a database including altitude and climatic parameters (minima mean of the coldest month, maxima mean of the hottest month, annual rainfall, pluviothermic coefficient of Emberger Q 2, annual minima mean and annual maxima mean) on a 30-year period using the representative stations of each breed distribution. The overlap between each breed combination was quantified through a canonical analysis that extracted the most discriminant parameters. The variance analysis of each climatic parameter evidenced two breeds remarkable by their tolerance. The first one is the Timahdite, mainly settled in areas over 1100 m, which can tolerate the greatest variations in annual rainfall and pluviothermic coefficient. In spite of this feature, this breed is endangered owing to the decreasing quality of pastures. The second one is the D'man which apparently can support high variations in extreme temperatures. In fact, this breed is not well adapted to pastures and requires a special microclimate offered by oases. The information reported in this study will be the basis for the establishment of characterization and selection strategies for Moroccan sheep.

Analysis of water level variation of lakes and reservoirs in Xinjiang, China using ICESat laser altimetry data (2003–2009)

PubMed Central

Liu, Hongxing; Chen, Yaning; Shu, Song; Wu, Qiusheng; Wang, Shujie

2017-01-01

This study utilizes ICESat Release 33 GLA14 data to analyse water level variation of Xinjiang’s lakes and reservoirs from 2003 to 2009. By using Landsat images, lakes and reservoirs with area larger than 1 km2 are numerically delineated with a software tool. Based on ICESat observations, we analyse the characteristics of water level variation in different geographic environments, as well as investigate the reasons for the variation. Results indicate that climatic warming contributes to rising water levels in lakes in mountainous areas, especially for lakes that are recharged by snow and glacial melting. For lakes in oases, the water levels are affected jointly by human activity and climate change, while the water levels of reservoirs are mainly affected by human activity. Comparing the annual average rates of water levels, those of lakes are higher than those of reservoirs in oasis areas. The main reasons for the decreasing water levels in desert regions are the reduction of recharged runoff and high evaporation. By analysing the variation of water levels and water volume in different geologic environments, it is found that water level and volume increased in mountainous regions, and decreased in oasis regions and desert regions. Finding also demonstrate that decreasing volume is greater than increasing volume, which results in decreasing total volume of Xinjiang lakes and reservoirs. PMID:28873094

The transboundary non-renewable Nubian Aquifer System of Chad, Egypt, Libya and Sudan: classical groundwater questions and parsimonious hydrogeologic analysis and modelin

USGS Publications Warehouse

Voss, Clifford I.; Soliman, Safaa M.

2014-01-01

Parsimonious groundwater modeling provides insight into hydrogeologic functioning of the Nubian Aquifer System (NAS), the world’s largest non-renewable groundwater system (belonging to Chad, Egypt, Libya, and Sudan). Classical groundwater-resource issues exist (magnitude and lateral extent of drawdown near pumping centers) with joint international management questions regarding transboundary drawdown. Much of NAS is thick, containing a large volume of high-quality groundwater, but receives insignificant recharge, so water-resource availability is time-limited. Informative aquifer data are lacking regarding large-scale response, providing only local-scale information near pumps. Proxy data provide primary underpinning for understanding regional response: Holocene water-table decline from the previous pluvial period, after thousands of years, results in current oasis/sabkha locations where the water table still intersects the ground. Depletion is found to be controlled by two regional parameters, hydraulic diffusivity and vertical anisotropy of permeability. Secondary data that provide insight are drawdowns near pumps and isotope-groundwater ages (million-year-old groundwaters in Egypt). The resultant strong simply structured three-dimensional model representation captures the essence of NAS regional groundwater-flow behavior. Model forecasts inform resource management that transboundary drawdown will likely be minimal—a nonissue—whereas drawdown within pumping centers may become excessive, requiring alternative extraction schemes; correspondingly, significant water-table drawdown may occur in pumping centers co-located with oases, causing oasis loss and environmental impacts.

The oasis effect and summer temperature rise in arid regions - case study in Tarim Basin

PubMed Central

Hao, Xingming; Li, Weihong; Deng, Haijun

2016-01-01

This study revealed the influence of the oasis effect on summer temperatures based on MODIS Land Surface Temperature (LST) and meteorological data. The results showed that the oasis effect occurs primarily in the summer. For a single oasis, the maximum oasis cold island intensity based on LST (OCILST) was 3.82 °C and the minimum value was 2.32 °C. In terms of the annual change in OCILST, the mean value of all oases ranged from 2.47 °C to 3.56 °C from 2001 to 2013. Net radiation (Rn) can be used as a key predictor of OCILST and OCItemperature (OCI based on air temperature). On this basis, we reconstructed a long time series (1961–2014) of OCItemperature and Tbase(air temperature without the disturbance of oasis effect). Our results indicated that the reason for the increase in the observed temperatures was the significant decrease in the OCItemperature over the past 50 years. In arid regions, the data recorded in weather stations not only underestimated the mean temperature of the entire study area but also overestimated the increasing trend of the temperature. These discrepancies are due to the limitations in the spatial distribution of weather stations and the disturbance caused by the oasis effect. PMID:27739500

Communication attitudes in children who stutter: A meta-analytic review.

PubMed

Guttormsen, Linn Stokke; Kefalianos, Elaina; Næss, Kari-Anne B

2015-12-01

This article presents a meta-analytic review of differences in communication attitudes between children who stutter (CWS) and children who do not stutter (CWNS). To be included in this review, the studies had to include a group of CWS and CWNS between the ages of 3-18 years and a measurement of communication attitudes. The journal articles were identified by using the key words stutter*, speech disfluenc*, fluency disorder*, and stammer* cross-referenced to awareness*, reaction*, attitude*, KiddyCAT, CAT, A-19 Scale, PASS and OASES. A total of 18 studies met the inclusion criteria for this meta-analysis. The results showed that CWS exhibit more negative communication attitudes than CWNS from the preschool years. The differences between the groups increased with age, but were not influenced by gender. The results indicate that negative communication attitudes can be an effect of stuttering. Key issues requiring further investigation are whether communication attitudes differ as a function of age at stuttering onset and whether communication attitudes influence the development of stuttering. After reading this article, the reader will be able to: (a) summarise empirical findings with regard to the relationship between communication attitudes and childhood stuttering; (b) describe the different instruments used to measure communication attitudes; (c) discuss the relationship between communication attitudes, age and gender. Copyright © 2015 Elsevier Inc. All rights reserved.

The transboundary non-renewable Nubian Aquifer System of Chad, Egypt, Libya and Sudan: classical groundwater questions and parsimonious hydrogeologic analysis and modeling

NASA Astrophysics Data System (ADS)

Voss, Clifford I.; Soliman, Safaa M.

2014-03-01

Parsimonious groundwater modeling provides insight into hydrogeologic functioning of the Nubian Aquifer System (NAS), the world's largest non-renewable groundwater system (belonging to Chad, Egypt, Libya, and Sudan). Classical groundwater-resource issues exist (magnitude and lateral extent of drawdown near pumping centers) with joint international management questions regarding transboundary drawdown. Much of NAS is thick, containing a large volume of high-quality groundwater, but receives insignificant recharge, so water-resource availability is time-limited. Informative aquifer data are lacking regarding large-scale response, providing only local-scale information near pumps. Proxy data provide primary underpinning for understanding regional response: Holocene water-table decline from the previous pluvial period, after thousands of years, results in current oasis/sabkha locations where the water table still intersects the ground. Depletion is found to be controlled by two regional parameters, hydraulic diffusivity and vertical anisotropy of permeability. Secondary data that provide insight are drawdowns near pumps and isotope-groundwater ages (million-year-old groundwaters in Egypt). The resultant strong simply structured three-dimensional model representation captures the essence of NAS regional groundwater-flow behavior. Model forecasts inform resource management that transboundary drawdown will likely be minimal—a nonissue—whereas drawdown within pumping centers may become excessive, requiring alternative extraction schemes; correspondingly, significant water-table drawdown may occur in pumping centers co-located with oases, causing oasis loss and environmental impacts.

The spread of modern humans in Europe

PubMed Central

Hoffecker, John F.

2009-01-01

The earliest credible evidence of Homo sapiens in Europe is an archaeological proxy in the form of several artifact assemblages (Bohunician) found in South-Central and possibly Eastern Europe, dating to ≤48,000 calibrated radiocarbon years before present (cal BP). They are similar to assemblages probably made by modern humans in the Levant (Emiran) at an earlier date and apparently represent a population movement into the Balkans during a warm climate interval [Greenland Interstadial 12 (GI 12)]. A second population movement may be represented by a diverse set of artifact assemblages (sometimes termed Proto-Aurignacian) found in the Balkans, parts of Southwest Europe, and probably in Eastern Europe, and dating to several brief interstadials (GI 11–GI 9) that preceded the beginning of cold Heinrich Event 4 (HE4) (≈40,000 cal BP). They are similar to contemporaneous assemblages made by modern humans in the Levant (Ahmarian). The earliest known human skeletal remains in Europe that may be unequivocally assigned to H. sapiens (Peçstera cu Oase, Romania) date to this time period (≈42,000 cal BP) but are not associated with artifacts. After the Campanian Ignimbrite volcanic eruption (40,000 cal BP) and the beginning of HE4, artifact assemblages assigned to the classic Aurignacian, an industry associated with modern human skeletal remains that seems to have developed in Europe, spread throughout the continent. PMID:19571003

The aquatic animals' transcriptome resource for comparative functional analysis.

PubMed

Chou, Chih-Hung; Huang, Hsi-Yuan; Huang, Wei-Chih; Hsu, Sheng-Da; Hsiao, Chung-Der; Liu, Chia-Yu; Chen, Yu-Hung; Liu, Yu-Chen; Huang, Wei-Yun; Lee, Meng-Lin; Chen, Yi-Chang; Huang, Hsien-Da

2018-05-09

Aquatic animals have great economic and ecological importance. Among them, non-model organisms have been studied regarding eco-toxicity, stress biology, and environmental adaptation. Due to recent advances in next-generation sequencing techniques, large amounts of RNA-seq data for aquatic animals are publicly available. However, currently there is no comprehensive resource exist for the analysis, unification, and integration of these datasets. This study utilizes computational approaches to build a new resource of transcriptomic maps for aquatic animals. This aquatic animal transcriptome map database dbATM provides de novo assembly of transcriptome, gene annotation and comparative analysis of more than twenty aquatic organisms without draft genome. To improve the assembly quality, three computational tools (Trinity, Oases and SOAPdenovo-Trans) were employed to enhance individual transcriptome assembly, and CAP3 and CD-HIT-EST software were then used to merge these three assembled transcriptomes. In addition, functional annotation analysis provides valuable clues to gene characteristics, including full-length transcript coding regions, conserved domains, gene ontology and KEGG pathways. Furthermore, all aquatic animal genes are essential for comparative genomics tasks such as constructing homologous gene groups and blast databases and phylogenetic analysis. In conclusion, we establish a resource for non model organism aquatic animals, which is great economic and ecological importance and provide transcriptomic information including functional annotation and comparative transcriptome analysis. The database is now publically accessible through the URL http://dbATM.mbc.nctu.edu.tw/ .

Robotic Astrobiology: Searching for Life with Rovers

NASA Astrophysics Data System (ADS)

Cabrol, N. A.; Wettergreen, D. S.; Team, L.

2006-05-01

The Life In The Atacama (LITA) project has developed and field tested a long-range, solar-powered, automated rover platform (Zoe) and a science payload assembled to search for microbial life in the Atacama desert. Life is hardly detectable over most of the extent of the driest desert on Earth. Its geological, climatic, and biological evolution provides a unique training ground for designing and testing exploration strategies and life detection methods for the robotic search for life on Mars. LITA opens the path to a new generation of rover missions that will transition from the current study of habitability (MER) to the upcoming search for, and study of, habitats and life on Mars. Zoe's science payload reflects this transition by combining complementary elements, some directed towards the remote sensing of the environment (geology, morphology, mineralogy, weather/climate) for the detection of conditions favorable to microbial habitats and oases along survey traverses, others directed toward the in situ detection of life' signatures (biological and physical, such as biological constructs and patterns). New exploration strategies specifically adapted to the search for microbial life were designed and successfully tested in the Atacama between 2003-2005. They required the development and implementation in the field of new technological capabilities, including navigation beyond the horizon, obstacle avoidance, and "science-on-the-fly" (automated detection of targets of science value), and that of new rover planning tools in the remote science operation center.

Coastal, valley, and oasis interaction: impact on the evolution of ancient populations in the South Central Andes.

PubMed

Varela, Héctor H; Cocilovo, Jose A; Fuchs, María L; O'Brien, Tyler G

2014-12-01

The existing biocultural links are analyzed among ancient inhabitants of the Cochabamba valleys (Bolivia) from the Formative and Tiwanaku periods, coastal and inland Azapa region (Chile) from the Late Archaic to the Late periods, and the Atacama Desert oases (Chile) from the Formative period to the time of European contact. Craniometric information obtained from a sample of 565 individuals from different sites of the studied regions was evaluated using methods derived from quantitative genetics and multivariate statistical analysis techniques. It is shown that during the Formative and Tiwanaku periods inhabitants of the Cochabamba valleys maintained contact with the population of northern Chile. This contact was more fluid with the people from the interior valley of Azapa than it was with the settlers of San Pedro Atacama (SPA). An important biological affinity in the Late Period between the inhabitants of the Azapa valley and the late SPA groups is also examined. The Late-Inca Catarpe SPA sample shows a broad genetic variability shared with the majority of the groups studied. The results reaffirm the differences between the coastal and interior Azapa valley groups and strengthen the hypothesis of two pathways to populating the south central Andean area. The divergence observed among subpopulations can be explained by the spatiotemporal dispersion between them, genetic drift dispersion compensated by the action of gene flow, and cultural norms that regulate within group mating. © 2014 Wiley Periodicals, Inc.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nisengard, Jennifer E.

Aggregation and integration are processes that occur in human societies throughout the globe. An informative example of population aggregation and social integration can be observed in the North American desert borderlands from A.D. 250 to 1450 in the area known as the Mogollon region. In fact, Mogollon communities oscillated from smaller social groups into larger ones and dispersed into smaller groups only to form larger ones again. For this reason, examining the groups of people living in the Mogollon region provides a magnified view of social change over a substantial period. Understanding patterns of aggregation and integration provides researchers withmore » the promise for research into the nature of these phenomena. In general, the Mogollon region is characterized by limited water supplies and low average annual precipitation. However, pockets of the Mogollon area, including the Mimbres valley and the Gila River valley, represent oases, where permanent rivers and their associated tributaries allowed for the pursuit of agricultural endeavors and access to a wide variety of wild plant and animal resources. The areas with these kinds of potential became population centers for previously dispersed groups of people living in the region. These people exploited natural resources and practiced agriculture in areas surrounding their communities. Over time, more organized aggregated and socially integrated communities were established throughout the region. Using ancient Mogollon communal architecture, commonly called kivas, this study examines issues of, and evidence for, population aggregation and social integration.« less

Creating their own private and public: the male homosexual life space in a Nordic city during high modernity.

PubMed

Nilsson, A

1998-01-01

In this article I describe the male homosexual life space in a Nordic city during the decades around the Second World War. It consisted almost entirely of outdoor places such as parks, public conveniencies, and streets. It included, in Delph's (1978) words, not only erotic, but also cultural and social oases, fostering an extensive and varied social life and a growing community. Most of this outdoor space was invisible to those other than the participants. It had its own differentiation of, and meanings for, "public" and "private." A poor economy, overcrowding, and the classical modern city helped shape the location and design of the male homosexual life space, as did the participation of many men who did not look upon themselves as "homosexual." During this period, and especially after the Second World War, this life space began to change in a direction pointing towards that of today, that is, towards less outdoor life and more life in homes and semipublic indoor spaces. Better economy, the rise of the welfare state, and diminished overcrowding furthered this movement. Among other things, these changes stimulated the withdrawal of men who did not see themselves as "homosexual." The transformation of the city into the spread out, suburbanized city, with segregation of various functions, contributed to the development, as did the obstruction of parks and toilets as meeting places by public authorities. The law reform of 1944, which decriminalized homosexual erotic acts between adults, was also of importance.

Tiwanaku influence and social inequality: A bioarchaeological, biogeochemical, and contextual analysis of the Larache cemetery, San Pedro de Atacama, Northern Chile.

PubMed

Torres-Rouff, Christina; Knudson, Kelly J; Pestle, William J; Stovel, Emily M

2015-12-01

To assess the relationship between the Tiwanaku polity and the individuals buried at the Middle Horizon (∼AD500-1000) cemetery of Larache in northern Chile, a site that has been singled out as a potential elite foreign enclave. We explore this association through the skeletal remains of 48 individuals interred at the cemetery of Larache using bioarchaeological, biogeochemical, and artifactual evidence. Data from cranial modification practices, violent injury, and the mortuary assemblage are used to explore culturally constructed elements of status and identity, radiogenic strontium isotope analyses provide us with a perspective on the geographic origins of these individuals, and stable carbon and nitrogen analyses allow discussion of paleodiet and access to resources. Radiogenic strontium isotope values show the presence of multiple first generation migrants at Larache. Stable carbon and nitrogen isotope data reveal significant differences among individuals. The mortuary context reveals a standard pattern for the oases but also includes a series of unusual burials with abundant gold and few other objects. Interestingly, both local and nonlocal individuals with different head shapes had access to the differentiated burial context; however nonlocal individuals appear to be the only ones with a heavily maize-based diet. Our evidence shows that Larache served as a burial place for a diverse, yet culturally integrated and potentially elite segment of the Atacameño population, but not a foreign enclave as had been postulated. © 2015 Wiley Periodicals, Inc.

How to allocate water resources under climate change in the arid endorheic river basin, Northwest China

NASA Astrophysics Data System (ADS)

Zhang, A.; Feng, D.; Tian, Y.; Zheng, Y.

2017-12-01

Water resource is of fundamental importance to the society and ecosystem in arid endorheic river basins, and water-use conflicts between upstream and downstream are usually significant. Heihe river basin (HRB) is the second largest endorheic river basin in china, which is featured with dry climate, intensively irrigated farmlands in oases and significant surface water-groundwater interaction. The irrigation districts in the middle HRB consume a large portion of the river flow, and the low HRB, mainly Gobi Desert, has an extremely vulnerable ecological environment. The water resources management has significantly altered the hydrological processes in HRB, and is now facing multiple challenges, including decline of groundwater table in the middle HRB, insufficient environmental flow for the lower HRB. Furthermore, future climate change adds substantial uncertainty to the water system. Thus, it is imperative to have a sustainable water resources management in HRB in order to tackle the existing challenges and future uncertainty. Climate projection form a dynamical downscaled climate change scenario shows precipitation will increase at a rate of approximately 3 millimeter per ten years and temperature will increase at a rate of approximately 0.2 centigrade degree per ten years in the following 50 years in the HRB. Based on an integrated ecohydrological model, we evaluated how the climate change and agricultural development would collaboratively impact the water resources and ecological health in the middle and lower HRB, and investigated how the water management should cope with the complex impact.

A ubiquitous thermoacidophilic archaeon from deep-sea hydrothermal vents

USGS Publications Warehouse

Reysenbach, A.-L.; Liu, Yajing; Banta, A.B.; Beveridge, T.J.; Kirshtein, J.D.; Schouten, S.; Tivey, M.K.; Von Damm, Karen L.; Voytek, M.A.

2006-01-01

Deep-sea hydrothermal vents are important in global biogeochemical cycles, providing biological oases at the sea floor that are supported by the thermal and chemical flux from the Earth's interior. As hot, acidic and reduced hydrothermal fluids mix with cold, alkaline and oxygenated sea water, minerals precipitate to form porous sulphide-sulphate deposits. These structures provide microhabitats for a diversity of prokaryotes that exploit the geochemical and physical gradients in this dynamic ecosystem. It has been proposed that fluid pH in the actively venting sulphide structures is generally low (pH < 4.5), yet no extreme thermoacidophile has been isolated from vent deposits. Culture-independent surveys based on ribosomal RNA genes from deep-sea hydrothermal deposits have identified a widespread euryarchaeotal lineage, DHVE2 (deep-sea hydrothermal vent euryarchaeotic 2). Despite the ubiquity and apparent deep-sea endemism of DHVE2, cultivation of this group has been unsuccessful and thus its metabolism remains a mystery. Here we report the isolation and cultivation of a member of the DHVE2 group, which is an obligate thermoacidophilic sulphur- or iron-reducing heterotroph capable of growing from pH 3.3 to 5.8 and between 55 and 75??C. In addition, we demonstrate that this isolate constitutes up to 15% of the archaeal population, providing evidence that thermoacidophiles may be key players in the sulphur and iron cycling at deep-sea vents. ?? 2006 Nature Publishing Group.

Analysis of Urban Expansion of the Resort City of Al Ain Using Remote Sensing and GIS

NASA Astrophysics Data System (ADS)

Issa, S.; Al Shuwaihi, A.

2009-12-01

The urban growth of AL Ain city has been investigated using remote sensing data for three different dates, 1972, 1990 and 2000. We used three Landsat images together with socio-economic data in a post-classification analysis to map the spatial dynamics of land use/cover changes and identify the urbanization process in Al Ain resort city, United Arab Emirates. Land use/cover statistics, extracted from Landsat Multi-spectral Scanner (MSS). Thematic Mapper (TM) and Enhanced Thematic Mapper plus (ETM +) images for 1972. 1990 and 2000 respectively, revealed that the built-up area has expanded by about 170.53km2. The city was found to have a tendency for major expansion in four different directions: along the Abu Dhabi highway, along Dubai highway, Myziad direction and Hafeet recreational area. Expansion in any direction was found to be governed by the availability of road network, suitability for construction, utilities, economic activities, geographical constraints, and legal factors (boundary with Sultanate of Oman). The road network in particular has influenced the spatial patterns and structure of urban development, so that the expansion of the built-up areas has assumed an accretive as well as linear growth along the major roads. The research concludes that the development is based on conservation of agricultural areas (oases) and reclamation of the desert for farming and agricultural activities. The integration of remote sensing and GIS was found to be effective in monitoring LULC changes and providing valuable information necessary for planning and research.

Analysis of de novo sequencing and transcriptome assembly and lignocellulolytic enzymes gene expression of Coriolopsis gallica HTC.

PubMed

Chen, Yuehong; Cao, Qinghua; Tao, Xiang; Shao, Huanhuan; Zhang, Kun; Zhang, Yizheng; Tan, Xuemei

2017-03-01

White-rot basidiomycete Coriolopsis gallica HTC is one of the main biodegraders of poplar. In our previous study, we have shown the strong capacity of C. gallica HTC to degrade lignocellulose. In this study, equal amounts of total RNA fromC. Gallica HTC cultures grown in different conditions were pooled together. Illumina paired-end RNA sequencing was performed, and 13.2 million 90-bp paired-end reads were generated. We chose the Merged Assembly of Oases data-set for the following blast searches and gene ontology analyses. The reads were assembled de novo into 28,034 transcripts (≥ 100 bp) using combined assembly strategy MAO. The transcripts were annotated using Blast2GO. In all, 18,810 transcripts (≥100 bp) achieved BLASTX hits, of which, 7048 transcripts had GO term and 2074 had ECs. The expression level of 11 lignocellulolytic enzyme genes from the assembled C. gallica HTC transcriptome were detected by real-time quantitative polymerase chain reaction. The results showed that expression levels of these genes were affected by carbon source and nitrogen source at the level of transcription. The current abundant transcriptome data allowed the identification of many new transcripts in C. gallica HTC. Data provided here represent the most comprehensive and integrated genomic resources for cloning and identifying genes of interest from C. gallica HTC. Characterization of C. gallica HTC transcriptome provides an effective tool to understand mechanisms underlying cellular and molecular functions of C. gallica HTC.

The crabs that live where hot and cold collide.

PubMed

Thurber, Andrew R

2015-07-01

The distribution of Kiwa tyleri with the large male individual in the high-temperature flow (right hand side - fluid flow indicated by shimmering water) and the mixed sex assemblage (left). Note the heavy coat of epibiotic bacteria (grey colouring) on the individual in the hottest section of the vent, as expected from being closest to the sulphide needed to sustain the epibiotic bacteria that this species harvests for its food. Image courtesy of Dr. L. Marsh (Credit: NERC ChEsSo Consortium). In Focus: Marsh, L., Copley, J.T., Tyler, P.A. & Thatje, S. (2015) In hot and cold water: differential life-history traits are key to success in contrasting thermal deep-sea environments. Journal of Animal Ecology, 84, 898-913. Southern Ocean hydrothermal vents juxtapose two extremes - intense food-poor cold and scalding food-rich oases. At these vents, Marsh et al. (2015) found a community of Kiwa (Yeti) crabs that separated themselves along this gradient with the largest males sitting in hot, food-rich waters, while smaller males and females co-occur in an intermediate zone of warmth. However, as their eggs start to develop, females embark away from the vent to the food-poor yet stable cold of the Southern Ocean. This species has found an intriguing way to balance foraging risk and population persistence at the interface of hot and cold. © 2015 The Author. Journal of Animal Ecology © 2015 British Ecological Society.

Jebel Hafit and the Al Ain oases (Eastern Abu Dhabi, United Arab Emirates): an integrative approach of a cultural landscape through the scope of geodiversity

NASA Astrophysics Data System (ADS)

Giusti, Christian; Louchet, André; Beuzen-Waller, Tara; Ragala, Rachid; Pavlopoulos, Kosmas; Fouache, Éric; Cohen, Marianne; Desruelles, Stéphane; Gramond, Delphine

2015-04-01

As it can be seen on satellite images, geological, and geomorphological maps, the Jebel Hafit and its foothills are a rare example of landforms developed at the transition between a compressive area in the east, i.e. the Northern Oman Mountains, and a stable cratonic platform in the west, i.e. the Arabic Platform which, from a structural point of view, represents the foreland of the previous folded domain. The mountains of Jebel Hafit formed in response to two main orogenic events in Late Cretaceous (obduction of Semail Ophiolite and associated rocks) and in the Late Eocene to Miocene (formation of foreland folds). Concerning the environment, landforms of the Jebel Hafit appears today under extreme arid climatic conditions. But, as it is evidenced by the density and variety of archaeological remains that have led to the inscription of the sites on the World Heritage List, the situation was different yesterday. It is well known that desert have changed through time, so present conditions may not necessarily be those that have moulded desert surface. This is particularly clear when we travel back by the thought from present to a more or less distant period in the past. It is therefore legitimate to study the biophysical remnants of paleo-environments, which accompany the development of human settlements and the increasing impact of societies on the environment. A particular challenge will be to discriminate clearly the effect of the active present-day climatic-driven processes (such as thermal fatigue weathering, salt weathering, wind corrasion, sporadic flooding…) and those of prehistoric times, which requires a geoarchaeological and paleoenvironmental approach of the Holocene as a whole and also before (Late Pleistocene). An important point not to be forgotten is that severe rainstorms happen on the area only at a highly variable temporal scale, especially hurricanes coming from the Indian Ocean and that may travel west of the Oman Mountains. At the level of human settlements and occupation, it is possible to characterize a threefold transition: first, the former transition between the pre-Islamic prehistoric societies and the development of Muslim societies; second, the more recent transition between the traditional historical society (farmers) and the contemporary society, characterized by the growth of urbanization, the creation of modern transport infrastructure and the concomitant growth of tourist flows; third, the current transition between the yesterday and tomorrow Al Ain City, due to the transformation of a local town centred on national economics all along the second half of the twentieth century, into an international town more open to the wider world with the management of a possible increased 20 % of tourist flow because of the inscription of Cultural Sites of Al Ain on the UNESCO's World Heritage List. It is not possible to completely ignore the fact that the Jebel Hafit and its foothills are partly crossed by an international boundary. In case of political tensions, this may cause some difficulties for the management of this territory, with contradictory requirements between security, tourism, traditional land use, and scientific research.

Information to support to monitoring and habitat restoration on Ash Meadows National Wildlife Refuge

USGS Publications Warehouse

Scoppettone, G. Gary

2013-01-01

The Ash Meadows National Wildlife Refuge staff focuses on improving habitat for the highest incidence of endemic species for an area of its size in the continental United States. Attempts are being made to restore habitat to some semblance of its pre-anthropogenic undisturbed condition, and to provide habitat conditions to which native plant and animal species have evolved. Unfortunately, restoring the Ash Meadows’ Oases to its pre-anthropogenic undisturbed condition is almost impossible. First, there are constraints on water manipulation because there are private holdings within the refuge boundary; second, there has been at least one species extinction—the Ash Meadows pool fish (Empetrichthys merriami). It is also quite possible that thermal endemic invertebrate species were lost before ever being described. Perhaps the primary obstacle to restoring Ash Meadows to its pre-anthropogenic undisturbed conditions is the presence of invasive species. However, invasive species, such as red swamp crayfish (Procambarus clarki) and western mosquitofish (Gambusia affinis), are a primary driving force in restoring Ash Meadows’ spring systems, because under certain habitat conditions they can all but replace native species. Returning Ash Meadows’ physical landscape to some semblance of its pre-anthropogenic undisturbed condition through natural processes may take decades. Meanwhile, the natural dissolution of concrete and earthen irrigation channels threatens to allow cattail marshes to flourish instead of spring-brooks immediately downstream of spring discharge. This successional stage favors non-native crayfish and mosquitofish over the native Amargosa pupfish (Cyprinodon nevadensis). Thus, restoration is needed to control non-natives and to promote native species, and without such intervention the probability of native fish reduction or loss, is anticipated. The four studies in this report are intended to provide information for restoring native fish habitat and

Diverse Microhabitats Experienced by Halomonas variabilis on Salt-Secreting Leaves

PubMed Central

Burch, Adrien Y.; Finkel, Omri M.; Cho, Juliana K.; Belkin, Shimshon

2013-01-01

The leaf surfaces of the salt-excreting tree Tamarix aphylla harbor a wide diversity of halophilic microorganisms, including Halomonas sp., but little is known of the factors that shape community composition in this extreme habitat. We isolated a strain of Halomonas variabilis from the leaf surface of T. aphylla and used it to determine the heterogeneity of salt concentrations experienced by bacteria in this environment. This halophilic strain was transformed with a proU::gfp reporter gene fusion, the fluorescence of which was responsive to NaCl concentrations up to 200 g liter−1. These bioreporting cells were applied to T. aphylla leaves and were subsequently recovered from dew droplets adhering to the leaf surface. Although cells from within a given dew droplet exhibited similar green fluorescent protein fluorescence, the fluorescence intensity varied between droplets and was correlated with the salt concentration measured in each drop. Growth of H. variabilis was observed in all droplets, regardless of the salt concentration. However, cells found in desiccated microniches between dew drops were low in abundance and generally dead. Other bacteria recovered from T. aphylla displayed higher desiccation tolerance than H. variabilis, both in culture and on inoculated plants, despite having lower osmotic tolerance. Thus, the Tamarix leaf surface can be described as a salty desert with occasional oases where water droplets form under humid conditions. While halotolerant bacteria such as Halomonas grow in high concentrations of salt in such wet microniches, other organisms are better suited to survive desiccation in sites that are not wetted. PMID:23160133

Carbonate precipitation under bulk acidic conditions as a potential biosignature for searching life on Mars

NASA Astrophysics Data System (ADS)

Fernández-Remolar, David C.; Preston, Louisa J.; Sánchez-Román, Mónica; Izawa, Matthew R. M.; Huang, L.; Southam, Gordon; Banerjee, Neil R.; Osinski, Gordon R.; Flemming, Roberta; Gómez-Ortíz, David; Prieto Ballesteros, Olga; Rodríguez, Nuria; Amils, Ricardo; Darby Dyar, M.

2012-10-01

Recent observations of carbonate minerals in ancient Martian rocks have been interpreted as evidence for the former presence of circumneutral solutions optimal for carbonate precipitation. Sampling from surface and subsurface regions of the low-pH system of Río Tinto has shown, unexpectedly, that carbonates can form under diverse macroscopic physicochemical conditions ranging from very low to neutral pH (1.5-7.0). A multi-technique approach demonstrates that carbonate minerals are closely associated with microbial activity. Carbonates occur in the form of micron-size carbonate precipitates under bacterial biofilms, mineralization of subsurface colonies, and possible biogenic microstructures including globules, platelets and dumbbell morphologies. We propose that carbonate precipitation in the low-pH environment of Río Tinto is a process enabled by microbially-mediated neutralization driven by the reduction of ferric iron coupled to the oxidation of biomolecules in microbially-maintained circumneutral oases, where the local pH (at the scale of cells or cell colonies) can be much different than in the macroscopic environment. Acidic conditions were likely predominant in vast regions of Mars over the last four billion years of planetary evolution. Ancient Martian microbial life inhabiting low-pH environments could have precipitated carbonates similar to those observed at Río Tinto. Preservation of carbonates at Río Tinto over geologically significant timescales suggests that similarly-formed carbonate minerals could also be preserved on Mars. Such carbonates could soon be observed by the Mars Science Laboratory, and by future missions to the red planet.

Benthic Macrofaunal Communities at Newly Explored Caribbean Seamounts in the Greater/Lesser Antilles Transition Zone and a Comparison to Nearby Habitats

NASA Astrophysics Data System (ADS)

Demopoulos, A. W.; Bourque, J. R.; Cordes, E. E.; Chaytor, J. D.; Quattrini, A.

2016-02-01

Seamounts are topographically and oceanographically complex features with environmental characteristics, including substrate types, carbon flux, and current patterns, that vary greatly within and among seamounts. While seamounts are reputed to be oases and biodiversity hotspots, comparisons across multiple spatial scales of a seamount chain have yet to be explored. Along the margins of the Caribbean Sea basin, numerous seamounts punctuate the seafloor. In 2013 and 2014, we investigated the deep-sea benthic community ecology at Noroît, Dog, and Conrad Seamounts and nearby ridge, bank, and rift environments at depths ranging from 630 to 2930 m. Sediment push cores were collected to quantify macrofaunal (> 300 μm) density, diversity, community composition, grain size, and organic content. In addition, environmental data collected from CTDs and extracted from high resolution multibeam mapping efforts (e.g. slope, rugosity, roughness, slope orientation), allowed us to evaluate the role of microhabitats in structuring these communities. Preliminary results indicate that macrofaunal density across all sites decreased with depth in both seamount and non-seamount sediments, with the highest densities occurring in non-seamount environments. However, macrofaunal density patterns varied on individual seamounts. Macrofaunal densities on shallow seamounts (Conrad and Dog) increased with depth, whereas densities decreased with depth on the deeper Noroît seamount. The relationship between environmental parameters and macrofaunal community structure and biodiversity varied among seamounts and non-seamount environments. This study represents the first investigation of seamount infauna in the region and places this baseline information on seamount faunal biodiversity, spatial distribution of taxa, and overall ecology into a broader biogeographic context.

Analysis of land cover change and its driving forces in a desert oasis landscape of southern Xinjiang, China

NASA Astrophysics Data System (ADS)

Amuti, T.; Luo, G.

2014-07-01

The combined effects of drought, warming and the changes in land cover have caused severe land degradation for several decades in the extremely arid desert oases of Southern Xinjiang, Northwest China. This study examined land cover changes during 1990-2008 to characterize and quantify the transformations in the typical oasis of Hotan. Land cover classifications of these images were performed based on the supervised classification scheme integrated with conventional vegetation and soil indexes. Change-detection techniques in remote sensing (RS) and a geographic information system (GIS) were applied to quantify temporal and spatial dynamics of land cover changes. The overall accuracies, Kappa coefficients, and average annual increase rate or decrease rate of land cover classes were calculated to assess classification results and changing rate of land cover. The analysis revealed that major trends of the land cover changes were the notable growth of the oasis and the reduction of the desert-oasis ecotone, which led to accelerated soil salinization and plant deterioration within the oasis. These changes were mainly attributed to the intensified human activities. The results indicated that the newly created agricultural land along the margins of the Hotan oasis could result in more potential areas of land degradation. If no effective measures are taken against the deterioration of the oasis environment, soil erosion caused by land cover change may proceed. The trend of desert moving further inward and the shrinking of the ecotone may lead to potential risks to the eco-environment of the Hotan oasis over the next decades.

Remote sensing and geophysical investigations of Moghra Lake in the Qattara Depression, Western Desert, Egypt

NASA Astrophysics Data System (ADS)

Khan, Shuhab D.; Fathy, Mohamed S.; Abdelazeem, Maha

2014-02-01

The Western Desert covers two-thirds of the land area of Egypt and occupies one of the driest regions of the Sahara. Seven depressions within the desert - Siwa, Qattara, Fayum, Bahariya, Farafra, Dakhla, and Kharga - may represent parts of old drainage systems with deflation, extensive erosion, and possibly, some tectonic activity. Oases with freshwater exist in these depressions. Geological and geophysical investigations in the Qattara Depression indicate the presence of buried fluvial channels with southeast to northwest flow directions from the highland areas. The origin of these fluvial systems, as well as the origin of the depressions themselves, is still unresolved, and many ideas have been suggested. Moghra Lake at the northeastern tip of the Qattara basin may be a remnant of a larger paleolake, including the mouth of a paleo-river. We present here the results of our recent work in this area using ALOS PALSAR radar remote sensing data, which indicated the presence of buried channels that may have fed the larger Moghra paleolake. Ground penetrating radar (GPR) data along 2D profiles were acquired; the migrated GPR sections identified a major paleochannel with numerous minor channels at its margins. GPR interpretations are verified by field observations, trenching, and stratigraphic information from outcrop data. Potential field analyses identify possible aquifers that are controlled by regional structures. Density contrasts within the sedimentary units, physical boundaries of uplifted basement blocks and depths to causative sources were also identified. This work contributes to the reconstruction of paleodrainage of this region and helps in understanding processes involved in the formation of the Qattara Depression.

Identification of an Archean marine oxygen oasis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Riding, Dr Robert E; Fralick, Dr Philip; Liang, Liyuan

2014-01-01

The early Earth was essentially anoxic. A number of indicators suggest the presence of oxygenic photosynthesis 2700 3000 million years (Ma) ago, but direct evidence for molecular oxygen (O2) in seawater has remained elusive. Here we report rare earth element (REE) analyses of 2800 million year old shallowmarine limestones and deep-water iron-rich sediments at Steep Rock Lake, Canada. These show that the seawater from which extensive shallow-water limestones precipitated was oxygenated, whereas the adjacent deeper waters where iron-rich sediments formed were not. We propose that oxygen promoted limestone precipitation by oxidative removal of dissolved ferrous iron species, Fe(II), to insolublemore » Fe(III) oxyhydroxide, and estimate that at least 10.25 M oxygen concentration in seawater was required to accomplish this at Steep Rock. This agrees with the hypothesis that an ample supply of dissolved Fe(II) in Archean oceans would have hindered limestone formation. There is no direct evidence for the oxygen source at Steep Rock, but organic carbon isotope values and diverse stromatolites in the limestones suggest the presence of cyanobacteria. Our findings support the view that during the Archean significant oxygen levels first developed in protected nutrient-rich shallow marine habitats. They indicate that these environments were spatially restricted, transient, and promoted limestone precipitation. If Archean marine limestones in general reflect localized oxygenic removal of dissolved iron at the margins of otherwise anoxic iron-rich seas, then early oxygen oases are less elusive than has been assumed.« less

Finding a needle in the virus metagenome haystack--micro-metagenome analysis captures a snapshot of the diversity of a bacteriophage armoire.

PubMed

Ray, Jessica; Dondrup, Michael; Modha, Sejal; Steen, Ida Helene; Sandaa, Ruth-Anne; Clokie, Martha

2012-01-01

Viruses are ubiquitous in the oceans and critical components of marine microbial communities, regulating nutrient transfer to higher trophic levels or to the dissolved organic pool through lysis of host cells. Hydrothermal vent systems are oases of biological activity in the deep oceans, for which knowledge of biodiversity and its impact on global ocean biogeochemical cycling is still in its infancy. In order to gain biological insight into viral communities present in hydrothermal vent systems, we developed a method based on deep-sequencing of pulsed field gel electrophoretic bands representing key viral fractions present in seawater within and surrounding a hydrothermal plume derived from Loki's Castle vent field at the Arctic Mid-Ocean Ridge. The reduction in virus community complexity afforded by this novel approach enabled the near-complete reconstruction of a lambda-like phage genome from the virus fraction of the plume. Phylogenetic examination of distinct gene regions in this lambdoid phage genome unveiled diversity at loci encoding superinfection exclusion- and integrase-like proteins. This suggests the importance of fine-tuning lyosgenic conversion as a viral survival strategy, and provides insights into the nature of host-virus and virus-virus interactions, within hydrothermal plumes. By reducing the complexity of the viral community through targeted sequencing of prominent dsDNA viral fractions, this method has selectively mimicked virus dominance approaching that hitherto achieved only through culturing, thus enabling bioinformatic analysis to locate a lambdoid viral "needle" within the greater viral community "haystack". Such targeted analyses have great potential for accelerating the extraction of biological knowledge from diverse and poorly understood environmental viral communities.

Re-evaluating the resource potential of lomas fog oasis environments for Preceramic hunter-gatherers under past ENSO modes on the south coast of Peru

NASA Astrophysics Data System (ADS)

Beresford-Jones, David; Pullen, Alexander G.; Whaley, Oliver Q.; Moat, Justin; Chauca, George; Cadwallader, Lauren; Arce, Susana; Orellana, Alfonso; Alarcón, Carmela; Gorriti, Manuel; Maita, Patricia K.; Sturt, Fraser; Dupeyron, Agathe; Huaman, Oliver; Lane, Kevin J.; French, Charles

2015-12-01

Lomas - ephemeral seasonal oases sustained by ocean fogs - were critical to ancient human ecology on the desert Pacific coast of Peru: one of humanity's few independent hearths of agriculture and "pristine" civilisation. The role of climate change since the Late Pleistocene in determining productivity and extent of past lomas ecosystems has been much debated. Here we reassess the resource potential of the poorly studied lomas of the south coast of Peru during the long Middle Pre-ceramic period (c. 8000-4500 BP): a period critical in the transition to agriculture, the onset of modern El Niño Southern Oscillation ('ENSO') conditions, and eustatic sea-level rise and stabilisation and beach progradation. Our method combines vegetation survey and herbarium collection with archaeological survey and excavation to make inferences about both Preceramic hunter-gatherer ecology and the changed palaeoenvironments in which it took place. Our analysis of newly discovered archaeological sites - and their resource context - show how lomas formations defined human ecology until the end of the Middle Preceramic Period, thereby corroborating recent reconstructions of ENSO history based on other data. Together, these suggest that a five millennia period of significantly colder seas on the south coast induced conditions of abundance and seasonal predictability in lomas and maritime ecosystems, that enabled Middle Preceramic hunter-gatherers to reduce mobility by settling in strategic locations at the confluence of multiple eco-zones at the river estuaries. Here the foundations of agriculture lay in a Broad Spectrum Revolution that unfolded, not through population pressure in deteriorating environments, but rather as an outcome of resource abundance.

Transcriptome sequencing reveals high isoform diversity in the ant Formica exsecta

PubMed Central

Paviala, Jenni; Morandin, Claire; Wheat, Christopher; Sundström, Liselotte; Helanterä, Heikki

2017-01-01

Transcriptome resources for social insects have the potential to provide new insight into polyphenism, i.e., how divergent phenotypes arise from the same genome. Here we present a transcriptome based on paired-end RNA sequencing data for the ant Formica exsecta (Formicidae, Hymenoptera). The RNA sequencing libraries were constructed from samples of several life stages of both sexes and female castes of queens and workers, in order to maximize representation of expressed genes. We first compare the performance of common assembly and scaffolding software (Trinity, Velvet-Oases, and SOAPdenovo-trans), in producing de novo assemblies. Second, we annotate the resulting expressed contigs to the currently published genomes of ants, and other insects, including the honeybee, to filter genes that have annotation evidence of being true genes. Our pipeline resulted in a final assembly of altogether 39,262 mRNA transcripts, with an average coverage of >300X, belonging to 17,496 unique genes with annotation in the related ant species. From these genes, 536 genes were unique to one caste or sex only, highlighting the importance of comprehensive sampling. Our final assembly also showed expression of several splice variants in 6,975 genes, and we show that accounting for splice variants affects the outcome of downstream analyses such as gene ontologies. Our transcriptome provides an outstanding resource for future genetic studies on F. exsecta and other ant species, and the presented transcriptome assembly can be adapted to any non-model species that has genomic resources available from a related taxon. PMID:29177112

Geology and geophysics of the West Nubian Paleolake and the Northern Darfur Megalake (WNPL-NDML): Implication for groundwater resources in Darfur, northwestern Sudan

NASA Astrophysics Data System (ADS)

Elsheikh, Ahmed; Abdelsalam, Mohamed G.; Mickus, Kevin

2011-08-01

The recent delineation of a vastly expanded Holocene paleo-lake (the Northern Darfur Megalake which was originally mapped as the West Nubian Paleolake and here will be referred to as WNPL-NDML) in Darfur in northwestern Sudan has renewed hopes for the presence of an appreciable groundwater resource in this hyper-arid region of Eastern Sahara. This paleolake which existed within a closed basin paleo-drainage system might have allowed for the collection of surface water which was subsequently infiltrated to recharge the Paleozoic-Mesozoic Nubian Aquifer. However, the presence of surface exposures of Precambrian crystalline rocks in the vicinity of the paleolake has been taken as indicating the absence of a thick Paleozoic-Mesozoic sedimentary section capable of holding any meaningful quantity of groundwater. This work integrates surface geology and gravity data to show that WNPL-NDML is underlain by NE-trending grabens forming potential local Paleozoic-Mesozoic aquifers that can hold as much as 1120 km 3 of groundwater if the sedimentary rocks are completely saturated. Nevertheless, it is advised here that recharge of the Nubian aquifer under WNPL-NDML is insignificant and that much of the groundwater is fossil water which was accumulated during different geological times much wetter than today's hyper-arid climate in Eastern Sahara. Excessive extraction will lead to quick depletion of this groundwater resource. This will result in lowering of the water table which in turn might lead to the drying out of the oases in the region which provide important habitats for humans, animals and plants in northern Darfur.

Leaf-trait responses to irrigation of the endemic fog-oasis tree Myrcianthes ferreyrae: can a fog specialist benefit from regular watering?

PubMed

Ramírez, David A; Balaguer, Luis; Mancilla, Rosa; González, Virginia; Coaguila, Daniel; Talavera, Carmelo; Villegas, Luis; Ortega, Aldo; Jiménez, Percy; Moreno, José M

2012-01-01

Myrcianthes ferreyrae is an endemic, endangered species, with a small number of individuals located only in hyperarid, fog-oases known as lomas along the Peruvian desert in southern Peru, where fog is the main source of water. Following centuries of severe deforestation, reforestation with this native species was conducted in the Atiquipa lomas, Arequipa-Perú. On five slopes, five 2-year-old seedlings were irrigated monthly with water trapped by raschel-mesh fog collectors, supplementing natural rainfall with 0, 20, 40, 60 and 80 mm month(-1) from February to August 2008. We measured plant growth, increment in basal diameter, height and five leaf traits: leaf mass area (LMA), leaf carbon isotope composition (δ(13)C), nitrogen per leaf area, total leaf carbon and stomatal density; which are indicative of the physiological changes resulting from increased water supply. Plant growth rates, estimated from the variation of either shoot basal diameter or maximum height, were highly correlated with total biomass. Only LMA and δ(13)C were higher in irrigated than in control plants, but we found no further differences among irrigation treatments. This threshold response suggests an on-off strategy fitted to exploit pulses of fog water, which are always limited in magnitude in comparison with natural rain. The absence of a differential response to increased water supply is in agreement with the low phenotypic plasticity expected in plants from very stressful environments. Our results have practical implications for reforestation projects, since irrigating with 20 mm per month is sufficient to achieve the full growth capacity of this species.

A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly

PubMed Central

2013-01-01

Background The lack of genomic resources can present challenges for studies of non-model organisms. Transcriptome sequencing offers an attractive method to gather information about genes and gene expression without the need for a reference genome. However, it is unclear what sequencing depth is adequate to assemble the transcriptome de novo for these purposes. Results We assembled transcriptomes of animals from six different phyla (Annelids, Arthropods, Chordates, Cnidarians, Ctenophores, and Molluscs) at regular increments of reads using Velvet/Oases and Trinity to determine how read count affects the assembly. This included an assembly of mouse heart reads because we could compare those against the reference genome that is available. We found qualitative differences in the assemblies of whole-animals versus tissues. With increasing reads, whole-animal assemblies show rapid increase of transcripts and discovery of conserved genes, while single-tissue assemblies show a slower discovery of conserved genes though the assembled transcripts were often longer. A deeper examination of the mouse assemblies shows that with more reads, assembly errors become more frequent but such errors can be mitigated with more stringent assembly parameters. Conclusions These assembly trends suggest that representative assemblies are generated with as few as 20 million reads for tissue samples and 30 million reads for whole-animals for RNA-level coverage. These depths provide a good balance between coverage and noise. Beyond 60 million reads, the discovery of new genes is low and sequencing errors of highly-expressed genes are likely to accumulate. Finally, siphonophores (polymorphic Cnidarians) are an exception and possibly require alternate assembly strategies. PMID:23496952

A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly.

PubMed

Francis, Warren R; Christianson, Lynne M; Kiko, Rainer; Powers, Meghan L; Shaner, Nathan C; Haddock, Steven H D

2013-03-12

The lack of genomic resources can present challenges for studies of non-model organisms. Transcriptome sequencing offers an attractive method to gather information about genes and gene expression without the need for a reference genome. However, it is unclear what sequencing depth is adequate to assemble the transcriptome de novo for these purposes. We assembled transcriptomes of animals from six different phyla (Annelids, Arthropods, Chordates, Cnidarians, Ctenophores, and Molluscs) at regular increments of reads using Velvet/Oases and Trinity to determine how read count affects the assembly. This included an assembly of mouse heart reads because we could compare those against the reference genome that is available. We found qualitative differences in the assemblies of whole-animals versus tissues. With increasing reads, whole-animal assemblies show rapid increase of transcripts and discovery of conserved genes, while single-tissue assemblies show a slower discovery of conserved genes though the assembled transcripts were often longer. A deeper examination of the mouse assemblies shows that with more reads, assembly errors become more frequent but such errors can be mitigated with more stringent assembly parameters. These assembly trends suggest that representative assemblies are generated with as few as 20 million reads for tissue samples and 30 million reads for whole-animals for RNA-level coverage. These depths provide a good balance between coverage and noise. Beyond 60 million reads, the discovery of new genes is low and sequencing errors of highly-expressed genes are likely to accumulate. Finally, siphonophores (polymorphic Cnidarians) are an exception and possibly require alternate assembly strategies.

Regional scale soil salinity assessment using remote sensing based environmental factors and vegetation indicators

NASA Astrophysics Data System (ADS)

Ma, Ligang; Ma, Fenglan; Li, Jiadan; Gu, Qing; Yang, Shengtian; Ding, Jianli

2017-04-01

Land degradation, specifically soil salinization has rendered large areas of China west sterile and unproductive while diminishing the productivity of adjacent lands and other areas where salting is less severe. Up to now despite decades of research in soil mapping, few accurate and up-to-date information on the spatial extent and variability of soil salinity are available for large geographic regions. This study explores the po-tentials of assessing soil salinity via linear and random forest modeling of remote sensing based environmental factors and indirect indicators. A case study is presented for the arid oases of Tarim and Junggar Basin, Xinjiang, China using time series land surface temperature (LST), evapotranspiration (ET), TRMM precipitation (TRM), DEM product and vegetation indexes as well as their second order products. In par-ticular, the location of the oasis, the best feature sets, different salinity degrees and modeling approaches were fully examined. All constructed models were evaluated for their fit to the whole data set and their performance in a leave-one-field-out spatial cross-validation. In addition, the Kruskal-Wallis rank test was adopted for the statis-tical comparison of different models. Overall, the random forest model outperformed the linear model for the two basins, all salinity degrees and datasets. As for feature set, LST and ET were consistently identified to be the most important factors for two ba-sins while the contribution of vegetation indexes vary with location. What's more, models performances are promising for the salinity ranges that are most relevant to agricultural productivity.

Transcriptome Profiling of Khat (Catha edulis) and Ephedra sinica Reveals Gene Candidates Potentially Involved in Amphetamine-Type Alkaloid Biosynthesis

PubMed Central

Groves, Ryan A.; Hagel, Jillian M.; Zhang, Ye; Kilpatrick, Korey; Levy, Asaf; Marsolais, Frédéric; Lewinsohn, Efraim; Sensen, Christoph W.; Facchini, Peter J.

2015-01-01

Amphetamine analogues are produced by plants in the genus Ephedra and by khat (Catha edulis), and include the widely used decongestants and appetite suppressants (1S,2S)-pseudoephedrine and (1R,2S)-ephedrine. The production of these metabolites, which derive from L-phenylalanine, involves a multi-step pathway partially mapped out at the biochemical level using knowledge of benzoic acid metabolism established in other plants, and direct evidence using khat and Ephedra species as model systems. Despite the commercial importance of amphetamine-type alkaloids, only a single step in their biosynthesis has been elucidated at the molecular level. We have employed Illumina next-generation sequencing technology, paired with Trinity and Velvet-Oases assembly platforms, to establish data-mining frameworks for Ephedra sinica and khat plants. Sequence libraries representing a combined 200,000 unigenes were subjected to an annotation pipeline involving direct searches against public databases. Annotations included the assignment of Gene Ontology (GO) terms used to allocate unigenes to functional categories. As part of our functional genomics program aimed at novel gene discovery, the databases were mined for enzyme candidates putatively involved in alkaloid biosynthesis. Queries used for mining included enzymes with established roles in benzoic acid metabolism, as well as enzymes catalyzing reactions similar to those predicted for amphetamine alkaloid metabolism. Gene candidates were evaluated based on phylogenetic relationships, FPKM-based expression data, and mechanistic considerations. Establishment of expansive sequence resources is a critical step toward pathway characterization, a goal with both academic and industrial implications. PMID:25806807

An exploration of the mechanisms of change following an integrated group intervention for stuttering, as perceived by school-aged children who stutter (CWS).

PubMed

Caughter, Sarah; Dunsmuir, Sandra

2017-03-01

To explore the process of change and role of resilience following an integrated group intervention for children who stutter (CWS). Using an exploratory multiple case study design, this research sought to identify the most significant changes perceived by seven participants following therapy, the mechanisms of change, and the role of resilience in the process of change. Quantitative measurements of resilience were combined with qualitative analysis of semi-structured interviews. Thematic analysis of qualitative data showed that cognitive and emotional change was a key driver for therapeutic change, enabled by the shared experience of the group and a positive therapeutic environment. These changes were generalised into clients' real-world experiences, facilitated by their support network. Quantitative data demonstrated a statistically reliable positive change in overall Resiliency scores for four participants and reduced impact of stuttering scores on OASES-S for all participants, maintained at 12 month follow-up. This study demonstrates the importance of adopting an integrated approach in therapy for CWS, which incorporates Cognitive Behavioural Therapy (CBT) as a key component, to facilitate change and build resilience. These results are unique to this cohort of CWS and further investigation into the use of CBT and the process of change may be warranted. The reader will be able to (1) describe the integrated intervention used in this study (2) define the most significant change following therapy for the participants involved (3) summarise the key factors that facilitated change during the therapy process (as perceived by the participants). Copyright © 2016 Elsevier Inc. All rights reserved.

Environmental margin and island evolution in Middle Eastern populations of the Egyptian fruit bat.

PubMed

Hulva, P; Marešová, T; Dundarova, H; Bilgin, R; Benda, P; Bartonička, T; Horáček, I

2012-12-01

Here, we present a study of the population genetic architecture and microevolution of the Egyptian fruit bat (Rousettus aegyptiacus) at the environmental margins in the Middle East using mitochondrial sequences and nuclear microsatellites. In contrast to the rather homogenous population structure typical of cave-dwelling bats in climax tropical ecosystems, a relatively pronounced isolation by distance and population diversification was observed. The evolution of this pattern could be ascribed to the complicated demographic history at higher latitudes related to the range margin fragmentation and complex geomorphology of the studied area. Lineages from East Africa and Arabia show divergent positions. Within the northwestern unit, the most marked pattern of the microsatellite data set is connected with insularity, as demonstrated by the separate status of populations from Saharan oases and Cyprus. These demes also exhibit a reduction in genetic variability, which is presumably connected with founder effects, drift and other potential factors related to island evolution as site-specific selection. Genetic clustering indicates a semipermeability of the desert barriers in the Sahara and Arabian Peninsula and a corridor role of the Nile Valley. The results emphasize the role of the island environment in restricting the gene flow in megabats, which is also corroborated by biogeographic patterns within the family, and suggests the possibility of nascent island speciation on Cyprus. Demographic analyses suggest that the colonization of the region was connected to the spread of agricultural plants; therefore, the peripatric processes described above might be because of or strengthened by anthropogenic changes in the environment. © 2012 Blackwell Publishing Ltd.

Who cares about Mid-Ocean Ridge Earthquakes? And Why?

NASA Astrophysics Data System (ADS)

Tolstoy, M.

2004-12-01

Every day the surface of our planet is being slowly ripped apart by the forces of plate tectonics. Much of this activity occurs underwater and goes unnoticed except for by a few marine seismologists who avidly follow the creaks and groans of the ocean floor in an attempt to understand the spreading and formation of oceanic crust. Are marine seismologists really the only ones that care? As it turns out, deep beneath the ocean surface, earthquakes play a fundamental role in a myriad of activity centered on mid-ocean ridges where new crust forms and breaks on a regular basis. This activity takes the form of exotic geological structures hosting roasting hot fluids and bizarre chemosynthetic life forms. One of the fundamental drivers for this other world on the seafloor is earthquakes. Earthquakes provide cracks that allow seawater to penetrate the rocks, heat up, and resurface as hydrothermal vent fluids, thus providing chemicals to feed a thriving biological community. Earthquakes can cause pressure changes along cracks that can fundamentally alter fluid flow rates and paths. Thus earthquakes can both cut off existing communities from their nutrient source and provide new oases on the seafloor around which life can thrive. This poster will present some of the fundamental physical principals of how earthquakes can impact fluid flow, and hence life on the seafloor. Using these other-wordly landscapes and alien-like life forms to woe the unsuspecting passerby, we will sneak geophysics into the picture and tell the story of why earthquakes are so fundamental to life on the seafloor, and perhaps life elsewhere in the universe.

Radium Isotopes in Nubian Aquifer Groundwater, Western Desert, Egypt

NASA Astrophysics Data System (ADS)

Sherif, M. I.; Sturchio, N. C.

2016-12-01

The purpose of this study is to investigate the extent of natural radioactivity from Ra isotopes in groundwater from the Nubian Sandstone Aquifer System (NSAS) in northeast Africa. Activities of long-lived Ra isotopes (226Ra and 228Ra) were analyzed in 40 groundwater samples from the NSAS in the Western Desert of Egypt; including Baharyia, Farafra, Dakhla, and Kharga Oases. The activities of 226Ra and 228Ra ranged from 0.012 Bq/L to 1.512 Bq/L and from 0.012 Bq/L to 2.136 Bq/L, respectively. High activities of Ra isotopes, up to 2000% higher than the USEPA maximum contaminant level (MCL) of 0.185 Bq/L (combined 226Ra + 228Ra) for drinking water were measured in groundwater from some locations. Groundwater samples from Bahariya Oasis had the highest activities of Ra isotopes among the samples collected. No correlation between salinity and Ra activities was observed. The two radium isotopes are highly correlated in most samples with a 228Ra/226Ra activity ratio ranging from 1.04 to 3.12 and a median of 2.08; this indicates a high Th/U ratio in the aquifer materials. The weak correlation between Ra activities and salinity indicates that adsorption/desorption processes are not the primary mechanism of Ra release to groundwater. Recoil input of Ra from the aquifer rocks may be the dominant input mechanism. These results indicate that groundwater within the Western Desert must be used with caution for domestic and agricultural purposes, and radium removal may be necessary before water is used for human consumption.

Investigating human responses to political and environmental change through paleodiet and paleomobility.

PubMed

Knudson, Kelly J; Torres-Rouff, Christina; Stojanowski, Christopher M

2015-06-01

Bioarchaeological approaches are well suited for examining past responses to political and environmental changes. In the Andes, we hypothesized that political and environmental changes around AD 1100 resulted in behavioral changes, visible as shifts in paleodiet and paleomobility, among individuals in the San Pedro de Atacama oases and Loa River Valley. To investigate this hypothesis, we generated carbon and oxygen isotope data from cemeteries dating to the early Middle Horizon (Larache, Quitor-5, Solor-3), late Middle Horizon (Casa Parroquial, Coyo Oriental, Coyo-3, Solcor-Plaza, Solcor-3, Tchecar), and Late Intermediate Period (Caspana, Quitor-6 Tardío, Toconce, Yaye-1, Yaye-2, Yaye-3, Yaye-4). Carbon isotope data demonstrate a greater range of carbon sources during the late Middle Horizon compared with the Late Intermediate Period; while most individuals consumed largely C3 sources, some late Middle Horizon individuals consumed more C4 sources. Oxygen isotope data demonstrate greater diversity in drinking water sources during the late Middle Horizon compared with the Late Intermediate Period. Water samples were analyzed to provide baseline data on oxygen isotope variability within the Atacama Desert, and demonstrated that oxygen isotope values are indistinguishable in the San Pedro and Loa Rivers. However, oxygen isotope values in water sources in the high-altitude altiplano and coast are distinct from those in the San Pedro and Loa Rivers. In conclusion, instead of utilizing a wider variety of resources after environmental and political changes, individuals exhibited a wider range of paleodietary and paleomobility strategies during the Middle Horizon, a period of environmental and political stability. © 2015 Wiley Periodicals, Inc.

Construction, De-Novo Assembly and Analysis of Transcriptome for Identification of Reproduction-Related Genes and Pathways from Rohu, Labeo rohita (Hamilton)

PubMed Central

Sahu, Dinesh Kumar; Panda, Soumya Prasad; Meher, Prem Kumar; Das, Paramananda; Routray, Padmanav; Sundaray, Jitendra Kumar; Jayasankar, Pallipuram; Nandi, Samiran

2015-01-01

Rohu is a leading candidate species for freshwater aquaculture in South-East Asia. Unlike common carp the monsoon breeding habit of rohu restricts its seed production beyond season indicating strong genetic control over spawning. Genetic information is limited in this regard. The problem is exacerbated by the lack of genomic-resources. We identified 182 reproduction-related genes previously by Sanger-sequencing which were less to address the issue of seasonal spawning behaviour of this important carp. Therefore, the present work was taken up to generate transcriptome profile by mRNAseq. 16GB, 72bp paired end (PE) data was generated from the pooled-RNA of twelve-tissues from pre-spawning rohu using IlluminaGA-II-platform. There were 64.97 million high-quality reads producing 62,283 contigs and 88,612 numbers of transcripts using velvet and oases programs, respectively. Gene ontology annotation identified 940 reproduction-related genes consisting of 184 mainly associated with reproduction, 223 related to hormone-activity and receptor-binding, 178 receptor-activity and 355 embryonic-development related-proteins. The important reproduction-relevant pathways found in KEGG analysis were GnRH-signaling, oocyte-meiosis, steroid-biosynthesis, steroid-hormone biosynthesis, progesterone-mediated oocyte-maturation, retinol-metabolism, neuroactive-ligand-receptor interaction, neurotrophin-signaling and photo-transduction. Twenty nine simple sequence repeat containing sequences were also found out of which 12 repeat loci were polymorphic with mean expected-&-observed heterozygosity of 0.471 and 0.983 respectively. Quantitative RT-PCR analyses of 13-known and 6-unknown transcripts revealed differences in expression level between preparatory and post-spawning phase. These transcriptomic sequences have significantly increased the genetic-&-genomic resources for reproduction-research in Labeo rohita. PMID:26148098

Astrobiology, Mars Exploration and Lassen Volcanic National Park

NASA Technical Reports Server (NTRS)

Des Marais, David J.

2015-01-01

The search for evidence of life beyond Earth illustrates how the charters of NASA and the National Park Service share common ground. The mission of NPS is to preserve unimpaired the natural and cultural resources of the National Park System for the enjoyment, education and inspiration of this and future generations. NASA's Astrobiology program seeks to understand the origins, evolution and distribution of life in the universe, and it abides by the principles of planetary stewardship, public outreach, and education. We cannot subject planetary exploration destinations to Earthly biological contamination both for ethical reasons and to preserve their scientific value for astrobiology. We respond to the public's interest in the mysteries of life and the cosmos by honoring their desire to participate in the process of discovery. We involve youth in order to motivate career choices in science and technology and to perpetuate space exploration. The search for evidence of past life on Mars illustrates how the missions of NASA and NPS can become synergistic. Volcanic activity occurs on all rocky planets in our Solar System and beyond, and it frequently interacts with water to create hydrothermal systems. On Earth these systems are oases for microbial life. The Mars Exploration Rover Spirit has found evidence of extinct hydrothermal system in Gusev crater, Mars. Lassen Volcanic National Park provides a pristine laboratory for investigating how microorganisms can both thrive and leave evidence of their former presence in hydrothermal systems. NASA scientists, NPS interpretation personnel and teachers can collaborate on field-oriented programs that enhance Mars mission planning, engage students and the public in science and technology, and emphasize the ethics of responsible exploration.

Whole-stream metabolism of a perennial spring-fed aufeis field in Alaska, with coincident surface and subsurface flow

NASA Astrophysics Data System (ADS)

Hendrickson, P. J.; Gooseff, M. N.; Huryn, A. D.

2017-12-01

Aufeis (icings or naleds) are seasonal arctic and sub-arctic features that accumulate through repeated overflow and freeze events of river or spring discharge. Aufeis fields, defined as the substrate on which aufeis form and the overlaying ice, have been studied to mitigate impacts on engineering structures; however, ecological characteristics and functions of aufeis fields are poorly understood. The perennial springs that supply warm water to aufeis fields create unique fluvial habitats, and are thought to act as winter and summer oases for biota. To investigate ecosystem function, we measured whole-stream metabolism at the Kuparuk River Aufeis (North Slope, AK), a large ( 5 km2) field composed of cobble substrate and predominately subsurface flow dynamics. The single-station open channel diel oxygen method was utilized at several dissolved oxygen (DO) stations located within and downstream of the aufeis field. DO loggers were installed in August 2016, and data downloaded summer 2017. Daily ecosystem respiration (ER), gross primary production (GPP) and reaeration rates were modeled using BASE, a package freely available in the open-source software R. Preliminary results support net heterotrophy during a two-week period of DO measurements in the fall season when minimum ice extent is observed. GPP, ER, and net metabolism are greater at the upstream reach near the spring source (P/R = 0.53), and decrease as flow moves downstream. As flow exits the aufeis field, surface and subsurface flow are incorporated into the metabolism model, and indicate the stream system becomes dependent on autochthonous production (P/R = 0.91). Current work is directed towards spring and summer discharge and metabolic parameter estimation, which is associated with maximum ice extent and rapid melting of the aufeis feature.

Astronomy Meets the Environmental Sciences: Using GLOBE at Night Data

NASA Astrophysics Data System (ADS)

Barringer, D.; Walker, C. E.; Pompea, S. M.; Sparks, R. T.

2011-09-01

The GLOBE at Night database now contains over 52,000 observations from the five annual two-week campaigns. It can be used as a resource to explore various issues related to light pollution and our environment. Students can compare data over time to look for changes and trends. For example, they can compare the data to population density or with nighttime photography and spectroscopy of lights. The data can be used in a lighting survey, to search for dark sky oases or to monitor ordinance compliance. Students can study effects of light pollution on animals, plants, human health, safety, security, energy consumption, and cost. As an example, we used data from the GLOBE at Night project and telemetry tracking data of lesser long-nosed bats obtained by the Arizona Game and Fish Department to study the effects of light pollution on the flight paths of the bats between their day roosts and night foraging areas around the city of Tucson, AZ. With the visual limiting magnitude data from GLOBE at Night, we ran a compositional analysis with respect to the bats' flight paths to determine whether the bats were selecting for or against flight through regions of particular night sky brightness levels. We found that the bats selected for the regions in which the limiting sky magnitudes fell between the ranges of 2.8-3.0 to 3.6-3.8 and 4.4-4.6 to 5.0-5.2, suggesting that the lesser long-nosed bat can tolerate a fair degree of urbanization. We also compared this result to contour maps created with digital Sky Quality Meter (http://www.unihedron.com) data.

Horse-mounted invaders from the Russo-Kazakh steppe or agricultural colonists from western Central Asia? A craniometric investigation of the Bronze Age settlement of Xinjiang.

PubMed

Hemphill, Brian E; Mallory, J P

2004-07-01

Numerous Bronze Age cemeteries in the oases surrounding the Täklamakan Desert of the Tarim Basin in the Xinjiang Uyghur Autonomous Region, western China, have yielded both mummified and skeletal human remains. A dearth of local antecedents, coupled with woolen textiles and the apparent Western physical appearance of the population, raised questions as to where these people came from. Two hypotheses have been offered by archaeologists to account for the origins of Bronze Age populations of the Tarim Basin. These are the "steppe hypothesis" and the "Bactrian oasis hypothesis." Eight craniometric variables from 25 Aeneolithic and Bronze Age samples, comprising 1,353 adults from the Tarim Basin, the Russo-Kazakh steppe, southern China, Central Asia, Iran, and the Indus Valley, are compared to test which, if either, of these hypotheses are supported by the pattern of phenetic affinities possessed by Bronze Age inhabitants of the Tarim Basin. Craniometric differences between samples are compared with Mahalanobis generalized distance (d2), and patterns of phenetic affinity are assessed with two types of cluster analysis (the weighted pair average linkage method and the neighbor-joining method), multidimensional scaling, and principal coordinates analysis. Results obtained by this analysis provide little support for either the steppe hypothesis or the Bactrian oasis hypothesis. Rather, the pattern of phenetic affinities manifested by Bronze Age inhabitants of the Tarim Basin suggests the presence of a population of unknown origin within the Tarim Basin during the early Bronze Age. After 1200 B.C., this population experienced significant gene flow from highland populations of the Pamirs and Ferghana Valley. These highland populations may include those who later became known as the Saka and who may have served as "middlemen" facilitating contacts between East (Tarim Basin, China) and West (Bactria, Uzbekistan) along what later became known as the Great Silk Road. Copyright

Phylogeography of endemic Xantus' hummingbird (Hylocharis xantusii) shows a different history of vicariance in the Baja California Peninsula.

PubMed

González-Rubio, Cristina; García-De León, Francisco J; Rodríguez-Estrella, Ricardo

2016-09-01

Studies of phylogeographic patterns provide insight into the processes driving lineage divergence in a particular region. To identify the processes that caused phylogeographic breaks, it is necessary to use historical information and a set of appropriate molecular data to explain current patterns. To understand the influence of geological or ecological processes on the phylogeography of the only species of hummingbird endemic to the Baja California Peninsula, Hylocharis xantusii, mitochondrial DNA sequences of three concatenated genes (Cyt-b, COI and ND2; 2297bp in total) in 100 individuals were analyzed. The spatial analyses of genetic variation showed phylogeographic structure consisting of a north, central and south regions. According to estimated divergence times, two vicariant events are supported, permanent separation of the peninsula and formation of the Gulf of California at 5mya and temporary isolation of the southern region at the Isthmus of La Paz at 3mya. The temporal frame of genetic differentiation of intraspecific haplotypes indicates that 90% of haplotypes diverged within the last 500,000years, with a population expansion 80,000years ago. Only four haplotypes diverged ∼2.2 my and occurred in the south (Hxan_36, 38 and 45), and north (Hxan_45 and 56) regions; only haplotype 45 is shared between south and north populations. These regions also have the most recent haplotypes from 12,500 to 16,200years ago, and together with high levels of genetic diversity, we suggest two refuge areas, the Northern and Southern regions. Our results indicate that the phylogeographic pattern first results from vicariance processes, then is followed by historical and recent climate fluctuations that influenced conditions on the peninsula, and it is also related to oases distribution. This study presents the first investigation of phylogeography of the peninsular' endemic Xantus' hummingbird. Copyright © 2016 Elsevier Inc. All rights reserved.

Analysis of Site Formation and Assemblage Integrity Does Not Support Attribution of the Uluzzian to Modern Humans at Grotta del Cavallo

PubMed Central

Zilhão, João; Banks, William E.; d’Errico, Francesco; Gioia, Patrizia

2015-01-01

Based on the morphology of two deciduous molars and radiocarbon ages from layers D and E of the Grotta del Cavallo (Lecce, Italy), assigned to the Uluzzian, it has been proposed that modern humans were the makers of this Early Upper Paleolithic culture and that this finding considerably weakens the case for an independent emergence of symbolism among western European Neandertals. Reappraisal of the new dating evidence, of the finds curated in the Taranto Antiquities depot, and of coeval publications detailing the site’s 1963–66 excavations shows that (a) Protoaurignacian, Aurignacian and Early Epigravettian lithics exist in the assemblages from layers D and E, (b) even though it contains both inherited and intrusive items, the formation of layer D began during Protoaurignacian times, and (c) the composition of the extant Cavallo assemblages is influenced in a non-negligible manner by the post-hoc assignment of items to stratigraphic units distinct from that of original discovery. In addition, a major disturbance feature affected the 1960s excavation trench down to Mousterian layer F, this feature went unrecognized until 1964, the human remains assigned to the Uluzzian were discovered that year and/or the previous year, and there are contradictions between field reports and the primary anthropological description of the remains as to their morphology and level of provenience. Given these major contextual uncertainties, the Cavallo teeth cannot be used to establish the authorship of the Uluzzian. Since this technocomplex’s start date is ca. 45,000 calendar years ago, a number of Neandertal fossils are dated to this period, and the oldest diagnostic European modern human fossil is the <41,400 year-old Oase 1 mandible, Neandertal authorship of the Uluzzian remains the parsimonious reading of the evidence. PMID:26154139

FOSS Tools for Research Infrastructures - A Success Story?

NASA Astrophysics Data System (ADS)

Stender, V.; Schroeder, M.; Wächter, J.

2015-12-01

Established initiatives and mandated organizations, e.g. the Initiative for Scientific Cyberinfrastructures (NSF, 2007) or the European Strategy Forum on Research Infrastructures (ESFRI, 2008), promote and foster the development of sustainable research infrastructures. The basic idea behind these infrastructures is the provision of services supporting scientists to search, visualize and access data, to collaborate and exchange information, as well as to publish data and other results. Especially the management of research data is gaining more and more importance. In geosciences these developments have to be merged with the enhanced data management approaches of Spatial Data Infrastructures (SDI). The Centre for GeoInformationTechnology (CeGIT) at the GFZ German Research Centre for Geosciences has the objective to establish concepts and standards of SDIs as an integral part of research infrastructure architectures. In different projects, solutions to manage research data for land- and water management or environmental monitoring have been developed based on a framework consisting of Free and Open Source Software (FOSS) components. The framework provides basic components supporting the import and storage of data, discovery and visualization as well as data documentation (metadata). In our contribution, we present our data management solutions developed in three projects, Central Asian Water (CAWa), Sustainable Management of River Oases (SuMaRiO) and Terrestrial Environmental Observatories (TERENO) where FOSS components build the backbone of the data management platform. The multiple use and validation of tools helped to establish a standardized architectural blueprint serving as a contribution to Research Infrastructures. We examine the question of whether FOSS tools are really a sustainable choice and whether the increased efforts of maintenance are justified. Finally it should help to answering the question if the use of FOSS for Research Infrastructures is a

Subsurface valleys and geoarcheology of the Eastern Sahara revealed by shuttle radar

USGS Publications Warehouse

McCauley, J.F.; Schaber, G.G.; Breed, C.S.; Grolier, M.J.; Haynes, C.V.; Issawi, B.; Elachi, C.; Blom, R.

1982-01-01

The shuttle imaging radar (SIR-A) carried on the space shuttle Columbia in November 1981 penetrated the extremely dry Selima Sand Sheet, dunes, and drift sand of the eastern Sahara, revealing previously unknown buried valleys, geologic structures, and possible Stone Age occupation sites. Radar responses from bedrock and gravel surfaces beneath windblown sand several centimeters to possibly meters thick delineate sand- and alluvium-filled valleys, some nearly as wide as the Nile Valley and perhaps as old as middle Tertiary. The nov-vanished maijor river systems that carved these large valleys probably accomplished most of the erosional stripping of this extraordinarily flat, hyperarid region. Underfit and incised dry wadis, many superimposed on the large valleys, represent erosion by intermittent running water, probably during Quaternary pluvials. Stone Age artifacts associated with soils in the alluvium suggest that areas near the wadis may have been sites of early human occupation. The presence of old drainage networks beneath the sand sheet provides a geologic explanation for the locations of many playas and present-day oases which have been centers of episodic human habitation. Radar penetration of dry sand and soils varies with the wavelength of the incident signals (24 centimeters for the SIR-A system), incidence angle, and the electrical properties of the materials, which are largely determined by moisture content. The calculated depth of radar penetration of dry sand and granules, based on laboratory measurements of the electrical properties of samples from the Selima Sand Sheet, is at least 5 meters. Recent (September 1982) field studies in Egypt verified SIR-A signal penetration depths of at least 1 meter in the Selima Sand Sheet and in drift sand and 2 or more meters in sand dunes. Copyright ?? 1982 AAAS.

Stable isotopes provide new insights into vestimentiferan physiological ecology at Gulf of Mexico cold seeps.

PubMed

Becker, Erin Leigh; Macko, Stephen A; Lee, Raymond W; Fisher, Charles R

2011-02-01

On the otherwise low-biomass seafloor of the Gulf of Mexico (GoM) continental slope, natural oil and gas seeps are oases of local primary production that support lush animal communities. Hundreds of seep communities have been documented on the continental slope, and nutrition derived from seeps could be an important link in the overall GoM food web. Here, we present a uniquely large and cohesive data set of δ(13)C, δ(15)N, and δ(34)S compositions of the vestimentiferan tubeworms Escarpia laminata and Lamellibrachia sp. 1, which dominate biomass at GoM seeps and provide habitat for hundreds of other species. Our sampling design encompassed an entire region of the GoM lower slope, allowing us for the first time to assess spatial variability in isotope compositions and to robustly address long-standing hypotheses about how vestimentiferans acquire and cycle nutrients over their long lifespan (200+ years). Tissue δ(13)C values provided strong evidence that larger adult vestimentiferans use their buried roots to take up dissolved inorganic carbon from sediment pore water, while very small individuals use their plume to take up carbon dioxide from the seawater. δ(34)S values were extremely variable among individuals of the same species within one location (<1 m(2) area), indicating high variability in the inorganic sulfur pools on a very small spatial scale. This finding supports the hypothesis that vestimentiferans use their roots to cycle sulfate and sulfide between their symbionts and free-living consortia of sulfate-reducing archaea in the sediment. Finally, consistent differences in δ(15)N between two cooccurring vestimentiferan species provided the first strong evidence for partitioning of inorganic resources, which has significant implications for the ecology and evolution of this taxonomic group.

Genetic epidemiology of the beta s gene.

PubMed

Nagel, R L; Fleming, A F

1992-04-01

The beta s gene arose at least four times in Africa, with three of these mutations expanding through diverse ethnic groups, but limited to definite geographical areas: Atlantic west Africa for the Senegal haplotype linked beta s; central west Africa for the Benin haplotype; and equatorial, eastern and southern Africa for the Bantu haplotype. The fourth mutation (linked to the Cameroon haplotype) is restricted to a single ethnic group, the Eton of central Cameroon. The Benin haplotype linked beta s gene was spread by gene flow to the Mediterranean (north, south and east) and to the western portions of Saudi Arabia. An independent mutation linked to a fifth haplotype, Arab-India, is found among the tribals of India (independent from their geographical origin) and in the eastern oases of Saudi Arabia. It is also suspected of being associated with the beta s gene found in Afghanistan, Iran, Transcaucasia and central Asia. The selective force involved in the expansion of the gene was most likely P. falciparum malaria, and the time of the gene frequency increase was likely to have been during the expansion of agriculture about 4000 or more years ago in India and about 3000 years ago in Africa. The partial protection against severe and life-threatening malaria is through the limitation of P. falciparum parasitaemia. This is a complex process which involves at least two mechanisms: early intraerythrocyte parasite forms are in a suicidal position through increasing the tendency of HbAS cell to sickle and then be destroyed by the spleen; intraerythrocyte growth is inhibited during deep vascular schizogony. Although there is evidence that P. falciparum (and P. malariae) parasitaemias are limited in HbSS red cells, malaria is a major trigger to haemolytic and infarctive crises in sickle-cell disease, and a common cause of morbidity and mortality.

Differences between Internet samples and conventional samples of men who have sex with men: implications for research and HIV interventions.

PubMed

Ross, M W; Tikkanen, R; Månsson, S A

2000-09-01

The Internet is becoming a new erotic oasis for obtaining sex online or in person. We reviewed the literature on cybersex and compared differences in data from samples of homosexually active men obtained on identical questionnaires from a conventional written questionnaire, distributed through the mailing and contact lists of a large national gay organization in Sweden, and through the same organization's website and chat room. A total of 716 written questionnaires and 678 Internet questionnaires were obtained. The Internet sample was younger, more likely to live in small towns or cities, live with parents or a girlfriend, and have lower formal education. They are less likely to have previous sexual experience solely with other men (one in three of the Internet sample vs. 1 in 14 of the written sample defined themselves as bisexual) and more likely to visit erotic oases such as bathhouses, video clubs and erotic movie houses. They also visited Internet chat rooms more frequently (86% of the Internet sample vs. 50% of the written sample). One third of the Internet sample wanted the opportunity to talk with an expert about HIV compared with a quarter of the written sample. Sexual practices between the two samples were generally similar, although the Internet sample reported significantly less body contact, kissing, hugging, mutual masturbation, and more condom use for anal intercourse with steady partners. Over four times as many of the Internet samples reported sex with women in the past year as the written sample. These data indicate that Internet data collection is feasible and that this mode of data collection, despite the nonrandom and self-selected nature of both types of samples, is likely to be more significantly oriented toward the young, geographically more isolated, and more behaviorally and self-identified bisexual respondent than conventionally distributed written questionnaires.

Exobiology site priorities for Mars Pathfinder

NASA Technical Reports Server (NTRS)

Farmer, Jack D.; Desmarais, David J.

1994-01-01

The fact that life developed on the Earth within the first billion years of its history makes it quite plausible that life may have also developed on Mars. If life did develop on Mars, it undoubtedly left behind a fossil record. Such a fossil record is likely to be more accessible than either subsurface environments that may harbor life, or scattered 'oases' that may be present at the surface. Consequently, the post-Viking approach of Mars exobiology has shifted focus to search for evidence of an ancient martian biosphere. This has led to the emergence of a new subdiscipline of paleontology, herein termed 'exopaleontology', which deals with the exploration for fossils on other planets and whose core concepts derive from Earth-based Precambrian paleontology, microbial ecology, and sedimentology. Potential targets on Mars for subaqueous spring deposits, sedimentary cements, and evaporites are ancient terminal lake basins where hydrological systems could have endured for some time under arid conditions. Potential targets for the Mars Pathfinder mission include channeled impact craters and areas of deranged drainage associated with outflows in northwest Arabia and Xanthe Terra, where water may have ponded temporarily to form lakes. The major uncertainty of such targets is their comparatively younger age and the potentially short duration of hydrological activity compared to older paleolake basins found in the southern hemisphere. However, it has been suggested that cycles of catastrophic flooding associated with Tharsis volcanism may have sustained a large body of water, Oceanus Borealis, in the northern plains area until quite late in martian history. Although problematic, the shoreline areas of the proposed northern ocean provide potential targets for a Mars Pathfinder mission aimed at exploring for carbonates or other potentially fossiliferous marine deposits. Carbonates and evaporites possess characteristic spectra signatures in the near-infrared and should be

Stable isotopes provide new insights into vestimentiferan physiological ecology at Gulf of Mexico cold seeps

NASA Astrophysics Data System (ADS)

Becker, Erin Leigh; Macko, Stephen A.; Lee, Raymond W.; Fisher, Charles R.

2011-02-01

On the otherwise low-biomass seafloor of the Gulf of Mexico (GoM) continental slope, natural oil and gas seeps are oases of local primary production that support lush animal communities. Hundreds of seep communities have been documented on the continental slope, and nutrition derived from seeps could be an important link in the overall GoM food web. Here, we present a uniquely large and cohesive data set of δ13C, δ15N, and δ34S compositions of the vestimentiferan tubeworms Escarpia laminata and Lamellibrachia sp. 1, which dominate biomass at GoM seeps and provide habitat for hundreds of other species. Our sampling design encompassed an entire region of the GoM lower slope, allowing us for the first time to assess spatial variability in isotope compositions and to robustly address long-standing hypotheses about how vestimentiferans acquire and cycle nutrients over their long lifespan (200+ years). Tissue δ13C values provided strong evidence that larger adult vestimentiferans use their buried roots to take up dissolved inorganic carbon from sediment pore water, while very small individuals use their plume to take up carbon dioxide from the seawater. δ34S values were extremely variable among individuals of the same species within one location (<1 m2 area), indicating high variability in the inorganic sulfur pools on a very small spatial scale. This finding supports the hypothesis that vestimentiferans use their roots to cycle sulfate and sulfide between their symbionts and free-living consortia of sulfate-reducing archaea in the sediment. Finally, consistent differences in δ15N between two cooccurring vestimentiferan species provided the first strong evidence for partitioning of inorganic resources, which has significant implications for the ecology and evolution of this taxonomic group.

Spring thaw ionic pulses boost nutrient availability and microbial growth in entombed Antarctic Dry Valley cryoconite holes

PubMed Central

Telling, Jon; Anesio, Alexandre M.; Tranter, Martyn; Fountain, Andrew G.; Nylen, Thomas; Hawkings, Jon; Singh, Virendra B.; Kaur, Preeti; Musilova, Michaela; Wadham, Jemma L.

2014-01-01

The seasonal melting of ice entombed cryoconite holes on McMurdo Dry Valley glaciers provides oases for life in the harsh environmental conditions of the polar desert where surface air temperatures only occasionally exceed 0°C during the Austral summer. Here we follow temporal changes in cryoconite hole biogeochemistry on Canada Glacier from fully frozen conditions through the initial stages of spring thaw toward fully melted holes. The cryoconite holes had a mean isolation age from the glacial drainage system of 3.4 years, with an increasing mass of aqueous nutrients (dissolved organic carbon, total nitrogen, total phosphorus) with longer isolation age. During the initial melt there was a mean nine times enrichment in dissolved chloride relative to mean concentrations of the initial frozen holes indicative of an ionic pulse, with similar mean nine times enrichments in nitrite, ammonium, and dissolved organic matter. Nitrate was enriched twelve times and dissolved organic nitrogen six times, suggesting net nitrification, while lower enrichments for dissolved organic phosphorus and phosphate were consistent with net microbial phosphorus uptake. Rates of bacterial production were significantly elevated during the ionic pulse, likely due to the increased nutrient availability. There was no concomitant increase in photosynthesis rates, with a net depletion of dissolved inorganic carbon suggesting inorganic carbon limitation. Potential nitrogen fixation was detected in fully melted holes where it could be an important source of nitrogen to support microbial growth, but not during the ionic pulse where nitrogen availability was higher. This study demonstrates that ionic pulses significantly alter the timing and magnitude of microbial activity within entombed cryoconite holes, and adds credence to hypotheses that ionic enrichments during freeze-thaw can elevate rates of microbial growth and activity in other icy habitats, such as ice veins and subglacial regelation zones

Spring thaw ionic pulses boost nutrient availability and microbial growth in entombed Antarctic Dry Valley cryoconite holes.

PubMed

Telling, Jon; Anesio, Alexandre M; Tranter, Martyn; Fountain, Andrew G; Nylen, Thomas; Hawkings, Jon; Singh, Virendra B; Kaur, Preeti; Musilova, Michaela; Wadham, Jemma L

2014-01-01

The seasonal melting of ice entombed cryoconite holes on McMurdo Dry Valley glaciers provides oases for life in the harsh environmental conditions of the polar desert where surface air temperatures only occasionally exceed 0°C during the Austral summer. Here we follow temporal changes in cryoconite hole biogeochemistry on Canada Glacier from fully frozen conditions through the initial stages of spring thaw toward fully melted holes. The cryoconite holes had a mean isolation age from the glacial drainage system of 3.4 years, with an increasing mass of aqueous nutrients (dissolved organic carbon, total nitrogen, total phosphorus) with longer isolation age. During the initial melt there was a mean nine times enrichment in dissolved chloride relative to mean concentrations of the initial frozen holes indicative of an ionic pulse, with similar mean nine times enrichments in nitrite, ammonium, and dissolved organic matter. Nitrate was enriched twelve times and dissolved organic nitrogen six times, suggesting net nitrification, while lower enrichments for dissolved organic phosphorus and phosphate were consistent with net microbial phosphorus uptake. Rates of bacterial production were significantly elevated during the ionic pulse, likely due to the increased nutrient availability. There was no concomitant increase in photosynthesis rates, with a net depletion of dissolved inorganic carbon suggesting inorganic carbon limitation. Potential nitrogen fixation was detected in fully melted holes where it could be an important source of nitrogen to support microbial growth, but not during the ionic pulse where nitrogen availability was higher. This study demonstrates that ionic pulses significantly alter the timing and magnitude of microbial activity within entombed cryoconite holes, and adds credence to hypotheses that ionic enrichments during freeze-thaw can elevate rates of microbial growth and activity in other icy habitats, such as ice veins and subglacial regelation zones.

Diversity and Community Composition of Vertebrates in Desert River Habitats

PubMed Central

Free, C. L.; Baxter, G. S.; Dickman, C. R.; Lisle, A.; Leung, L. K.-P.

2015-01-01

Animal species are seldom distributed evenly at either local or larger spatial scales, and instead tend to aggregate in sites that meet their resource requirements and maximise fitness. This tendency is likely to be especially marked in arid regions where species could be expected to concentrate at resource-rich oases. In this study, we first test the hypothesis that productive riparian sites in arid Australia support higher vertebrate diversity than other desert habitats, and then elucidate the habitats selected by different species. We addressed the first aim by examining the diversity and composition of vertebrate assemblages inhabiting the Field River and adjacent sand dunes in the Simpson Desert, western Queensland, over a period of two and a half years. The second aim was addressed by examining species composition in riparian and sand dune habitats in dry and wet years. Vertebrate species richness was estimated to be highest (54 species) in the riverine habitats and lowest on the surrounding dune habitats (45 species). The riverine habitats had different species pools compared to the dune habitats. Several species, including the agamid Gowidon longirostris and tree frog Litoria rubella, inhabited the riverine habitats exclusively, while others such as the skinks Ctenotus ariadnae and C. dux were captured only in the dune habitats. The results suggest that, on a local scale, diversity is higher along riparian corridors and that riparian woodland is important for tree-dependent species. Further, the distribution of some species, such as Mus musculus, may be governed by environmental variables (e.g. soil moisture) associated with riparian corridors that are not available in the surrounding desert environment. We conclude that inland river systems may be often of high conservation value, and that management should be initiated where possible to alleviate threats to their continued functioning. PMID:26637127

The influence of topography on vertical velocity of air in relation to severe storms near the Southern Andes Mountains

NASA Astrophysics Data System (ADS)

de la Torre, A.; Pessano, H.; Hierro, R.; Santos, J. R.; Llamedo, P.; Alexander, P.

2015-04-01

On the basis of 180 storms which took place between 2004 and 2011 over the province of Mendoza (Argentina) near to the Andes Range at southern mid-latitudes, we consider those registered in the northern and central crop areas (oases). The regions affected by these storms are currently protected by an operational hail mitigation project. Differences with previously reported storms detected in the southern oasis are highlighted. Mendoza is a semiarid region situated roughly between 32S and 37S at the east of the highest Andes top. It forms a natural laboratory where different sources of gravity waves, mainly mountain waves, occur. In this work, we analyze the effects of flow over topography generating mountain waves and favoring deep convection. The joint occurrence of storms with hail production and mountain waves is determined from mesoscale numerical simulations, radar and radiosounding data. In particular, two case studies that properly represent diverse structures observed in the region are considered in detail. A continuous wavelet transform is applied to each variable and profile to detect the main oscillation modes present. Simulated temperature profiles are validated and compared with radiosounding data. Each first radar echo, time and location are determined. The necessary energy to lift a parcel to its level of free convection is tested from the Convective Available Potential Energy and Convection Inhibition. This last parameter is compared against the mountain waves' vertical kinetic energy. The time evolution and vertical structure of vertical velocity and equivalent potential temperature suggest in both cases that the detected mountain wave amplitudes are able to provide the necessary energy to lift the air parcel and trigger convection. A simple conceptual scheme linking the dynamical factors taking place before and during storm development is proposed.

Geobiology: A Conceptual Framework for Understanding Earth's Surface

NASA Astrophysics Data System (ADS)

Sumner, D. Y.

2016-12-01

A topic of study becomes a new field when it provides a useful conceptual framework for understanding suites of important processes. Geobiology integrates microbial biology with Earth sciences in a way that allows us to ask - and answer - deeper questions about Earth and the life on it. Recent studies of the oxidation of Earth's surface exemplify the impact of Geobiology as a new field. For decades, scientists have understood that Earth's surface was oxidized by photosynthesis. Geochemical records indicate dramatic redox changes both globally, e.g. the loss of MIF sulfur signatures due to formation of an ozone layer, and locally, as preserved in sedimentary rocks. However, these records depend critically on the dynamics of both the global biosphere and local microbial ecology. For example, an increase in global redox due to photosynthetic iron oxidation has different biogeochemical implications than an increase from oxygenic photosynthesis; O2 reacts very differently with organic matter and minerals than iron oxyhydroxides do, influencing microbial ecology as well as potential geochemical signatures in sedimentary rocks. Thus, studies of modern microbial communities provide insights into the interactions among metabolisms and geochemical gradients that have shaped Earth's redox history. For example, the ability of cyanobacteria to create O2 oases in benthic mats and soils on land provides a new framework for evaluating redox-sensitive elemental fluxes to the ocean. Similarly, genomic studies of Cyanobacteria have revealed close relatives, Melainabacteria, that are mostly obligate anaerobes. The evolutionary relationships between these two groups, as preserved in their genomes, reflect important microbial processes that led to oxidation of Earth's surface. By combining insights from microbial biology and sedimentary geochemistry, geobiologists will develop significantly more accurate models of the interactions between life and Earth.

The effect of widespread early aerobic marine ecosystems on methane cycling and the Great Oxidation

NASA Astrophysics Data System (ADS)

Daines, Stuart J.; Lenton, Timothy M.

2016-01-01

The balance of evidence suggests that oxygenic photosynthesis had evolved by 3.0-2.7 Ga, several hundred million years prior to the Great Oxidation ≈2.4 Ga. Previous work has shown that if oxygenic photosynthesis spread globally prior to the Great Oxidation, this could have supported widespread aerobic ecosystems in the surface ocean, without oxidising the atmosphere. Here we use a suite of models to explore the implications for carbon cycling and the Great Oxidation. We find that recycling of oxygen and carbon within early aerobic marine ecosystems would have restricted the balanced fluxes of methane and oxygen escaping from the ocean, lowering the atmospheric concentration of methane in the Great Oxidation transition and its aftermath. This in turn would have minimised any bi-stability of atmospheric oxygen, by weakening a stabilising feedback on oxygen from hydrogen escape to space. The result would have been a more reversible and probably episodic rise of oxygen at the Great Oxidation transition, consistent with existing geochemical evidence. The resulting drop in methane levels to ≈10 ppm is consistent with climate cooling at the time but adds to the puzzle of what kept the rest of the Proterozoic warm. A key test of the scenario of abundant methanotrophy in oxygen oases before the Great Oxidation is its predicted effects on the organic carbon isotope (δ13Corg) record. Our open ocean general circulation model predicts δC13org ≈ - 30 to -45‰ consistent with most data from 2.65 to 2.45 Ga. However, values of δC13org ≈ - 50 ‰ require an extreme scenario such as concentrated methanotroph production where shelf-slope upwelling of methane-rich water met oxic shelf water.

Ecological effects and potential risks of the water diversion project in the Heihe River Basin.

PubMed

Zhang, Mengmeng; Wang, Shuai; Fu, Bojie; Gao, Guangyao; Shen, Qin

2018-04-01

To curb the severe ecological deterioration in the lower Heihe River Basin (HRB) in northwest China, a water diversion project was initiated in 2000. A comprehensive analysis of the ecological effects and potential risks associated with the project is needed. We assessed the hydrological and ecological achievements, and also analyzed the potential problems after the project was completed. We found that since the project began the hydrological regime has changed, with more than 57.82% of the upstream water being discharged to the lower reaches on average. As a result, the groundwater level in the lower reaches has risen; the terminal lake has gradually expanded to a maximum area in excess of 50km 2 since 2010, and there has been a significant recovery of vegetation in the riparian zone and the Ejin core oases, which represents the initial rehabilitation of the degraded downstream environment. Additionally, the economy of Ejin has developed spectacularly, with an annual growth rate of 28.06%. However, in the middle reaches, the average groundwater level has continuously declined by a total of 5.8m and significant degradation of the vegetation has occurred along the river course. The discrepancy in the water allocation between the middle and lower reaches has intensified. This highlights the inability of the current water diversion scheme to realize further ecological restoration and achieve sustainable development throughout the whole basin. In future water management programs, we recommend that water allocation is coordinated by considering the basin as an integrated entity and to scientifically determine the size of the midstream farmland and downstream oasis; restrict non-ecological water use in the lower reaches, and jointly dispatch the surface water and groundwater. Copyright © 2017 Elsevier B.V. All rights reserved.

How transformational learning promotes caring, consultation and creativity, and ultimately contributes to sustainable development: Lessons from the Partnership for Education and Research about Responsible Living (PERL) network

NASA Astrophysics Data System (ADS)

Thoresen, Victoria Wyszynski

2017-12-01

Oases of learning which are transformative and lead to significant behavioural change can be found around the globe. Transformational learning has helped learners not only to understand what they have been taught but also to re-conceptualise and re-apply this understanding to their daily lives. Unfortunately, as many global reports indicate, inspirational transformational learning approaches for sustainable development are rare and have yet to become the norm - despite calls for such approaches by several outstanding educators and organisations. This article examines three learning approaches developed by the network of the Partnership for Education and Research about Responsible Living (PERL). These approaches are structured around core elements of transformative learning for sustainable development, yet focus particularly on the ability to care, consult with others and be creative. They seem to depend on the learners' ability to articulate their perceptions of sustainable development in relation to their own values and to identify how these are actualised in their daily life. Together with other core elements of transformative learning, an almost magical (not precisely measurable) synergy then emerges. The intensity of this synergy appears to be directly related to the individual learner's understanding of the contradictions, interlinkages and interdependencies of modern society. The impact of this synergy seems to be concurrent with the extent to which the learner engages in a continual learning process with those with whom he/she has contact. The findings of this study suggest that mainstreaming transformational learning for sustainable development in ways that release the "magic synergy of creative caring" can result in the emergence of individuals who are willing and able to move from "business as usual" towards more socially just, economically equitable, and environmentally sensitive behaviour.

Reproduction of Amorpha canescens (Fabaceae) and diversity of its bee community in a fragmented landscape.

PubMed

Slagle, Malinda W; Hendrix, Stephen D

2009-10-01

Loss of insect pollinators due to habitat fragmentation often results in negative effects on plant reproduction, but few studies have simultaneously examined variation in the bee community, site characteristics and plant community characteristics to evaluate their relative effects on plant reproduction in a fragmented habitat. We examined the reproduction of a common tallgrass prairie forb, Amorpha canescens (Fabaceae), in large (>40 ha) and small (<2 ha) prairie remnants in Iowa and Minnesota in relation to the diversity and abundance of its bee visitors, plant population size, and species density of the forb flowering community. We found significant positive effects of the diversity of bees visiting A. canescens on percent fruit set at a site in both years of the study and in 2002 an additional significant positive effect of plant species density. Abundance of bees visiting A. canescens had a significant positive effect on percent fruit set in 2002, but was only marginally significant in 2003. In 2003 but not 2002, the plant species density at the sites had a significant negative effect on the diversity and abundance of bees visiting A. canescens, indicating community-level characteristics can influence the bee community visiting any one species. Site size, a common predictor of plant reproduction in fragmented habitats did not contribute to any models of fruit set and was only marginally related to bee diversity one year. Andrena quintilis, one of the three oligolectic bee species associated with A. canescens, was abundant at all sites, suggesting it has not been significantly affected by fragmentation. Our results show that the diversity of bees visiting A. canescens is important for maintaining fruit set and that bee visitation is still sufficient for at least some fruit set in all populations, suggesting these small remnants act as floral resource oases for bees in landscapes often dominated by agriculture.

Evaluation of the pollution and human health risks posed by heavy metals in the atmospheric dust in Ebinur Basin in Northwest China.

PubMed

Abuduwailil, Jilili; Zhaoyong, Zhang; Fengqing, Jiang

2015-09-01

Recently, a large amount of research assessing pollution levels and the related health risks posed by atmosphere dust has been undertaken worldwide. However, little work has been done in the oases of the arid regions of Northwest China. In this paper, we studied the pollution and health risks over a year of seven heavy metals in the atmospheric dust of Ebinur Basin, a typical oasis in Northwest China. The results showed the following: (1) The annual amount of atmospheric deposition in Ebinur Basin was 298.23 g m(-2) and the average monthly atmospheric deposition was 25.06 g m(-2). The average and maximum values of the seven heavy metals measured were all below the National Soil Environmental Quality Standards (2nd). (2) Heavy metals of Cu, Cr, and As in the atmospheric deposition mainly originated from the natural geological background, while Zn came from human activity. This study also showed that among the seven measured heavy metals, the ratios of the no-pollution status of Pb, Cd, and Hg were higher than those of others with moderate degrees of pollution also accounting for a certain ratio. (3) The carcinogenic risks from As, Cd, and Cr were all lower than the corresponding standard limit values, and these metals are considered not harmful to the health of the basin. However, there is a relatively high risk of exposure for children from hand-to-mouth intake, which is worthy of attention. This research showed that both human activity and natural factors, such as wind and altitude, influenced the heavy metal contents in the atmospheric dust of the study area. Furthermore, recent human activity in the study area had the most negative influence on the accumulation of the heavy metals and the corresponding health risks, especially for Hg, Pb, and Cd, which is worthy of attention.

Methane Metabolizing Microbial Communities in the Cold Seep Areas in the Northern Continental Shelf of South China Sea

NASA Astrophysics Data System (ADS)

Wang, F.; Liang, Q.

2016-12-01

Marine sediment contains large amount of methane, estimated approximately 500-2500 gigatonnes of dissolved and hydrated methane carbon stored therein, mainly in continental margins. In localized specific areas named cold seeps, hydrocarbon (mainly methane) containing fluids rise to the seafloor, and support oases of ecosystem composed of various microorganisms and faunal assemblages. South China Sea (SCS) is surrounded by passive continental margins in the west and north and convergent margins in the south and east. Thick organic-rich sediments have accumulated in the SCS since the late Mesozoic, which are continuing sources to form gas hydrates in the sediments of SCS. Here, Microbial ecosystems, particularly those involved in methane transformations were investigated in the cold seep areas (Qiongdongnan, Shenhu, and Dongsha) in the northern continental shelf of SCS. Multiple interdisciplinary analytic tools such as stable isotope probing, geochemical analysis, and molecular ecology, were applied for a comprehensive understanding of the microbe mediated methane transformation in this project. A variety of sediments cores have been collected, the geochemical profiles and the associated microbial distribution along the sediment cores were recorded. The major microbial groups involved in the methane transformation in these sediment cores were revealed, known methane producing and oxidizing archaea including Methanosarcinales, anaerobic methane oxidizing groups ANME-1, ANME-2 and their niche preference in the SCS sediments were found. In-depth comparative analysis revealed the presence of SCS-specific archaeal subtypes which probably reflected the evolution and adaptation of these methane metabolizing microbes to the SCS environmental conditions. Our work represents the first comprehensive analysis of the methane metabolizing microbial communities in the cold seep areas along the northern continental shelf of South China Sea, would provide new insight into the

Forest Restoration in a Fog Oasis: Evidence Indicates Need for Cultural Awareness in Constructing the Reference

PubMed Central

Balaguer, Luís; Arroyo-García, Rosa; Jiménez, Percy; Jiménez, María Dolores; Villegas, Luís; Cordero, Irene; Rubio de Casas, Rafael; Fernández-Delgado, Raúl; Ron, María Eugenia; Manrique, Esteban; Vargas, Pablo; Cano, Emilio; Pueyo, José J.; Aronson, James

2011-01-01

Background In the Peruvian Coastal Desert, an archipelago of fog oases, locally called lomas, are centers of biodiversity and of past human activity. Fog interception by a tree canopy, dominated by the legume tree tara (Caesalpinia spinosa), enables the occurrence in the Atiquipa lomas (southern Peru) of an environmental island with a diverse flora and high productivity. Although this forest provides essential services to the local population, it has suffered 90% anthropogenic reduction in area. Restoration efforts are now getting under way, including discussion as to the most appropriate reference ecosystem to use. Methodology/Principal Findings Genetic diversity of tara was studied in the Atiquipa population and over a wide geographical and ecological range. Neither exclusive plastid haplotypes to loma formations nor clear geographical structuring of the genetic diversity was found. Photosynthetic performance and growth of seedlings naturally recruited in remnant patches of loma forest were compared with those of seedlings recruited or planted in the adjacent deforested area. Despite the greater water and nitrogen availability under tree canopy, growth of forest seedlings did not differ from that of those recruited into the deforested area, and was lower than that of planted seedlings. Tara seedlings exhibited tight stomatal control of photosynthesis, and a structural photoprotection by leaflet closure. These drought-avoiding mechanisms did not optimize seedling performance under the conditions produced by forest interception of fog moisture. Conclusions/Significance Both weak geographic partitioning of genetic variation and lack of physiological specialization of seedlings to the forest water regime strongly suggest that tara was introduced to lomas by humans. Therefore, the most diverse fragment of lomas is the result of landscape management and resource use by pre-Columbian cultures. We argue that an appropriate reference ecosystem for ecological restoration

Manganese oxide shuttling in pre-GOE oceans - evidence from molybdenum and iron isotopes

NASA Astrophysics Data System (ADS)

Kurzweil, Florian; Wille, Martin; Gantert, Niklas; Beukes, Nicolas J.; Schoenberg, Ronny

2016-10-01

The local occurrence of oxygen-rich shallow marine water environments has been suggested to significantly predate atmospheric oxygenation, which occurred during the Great Oxidation Event (GOE) ca. 2.4 billion years ago. However, the potential influence of such 'oxygen oases' on the mobility, distribution and isotopic composition of redox sensitive elements remains poorly understood. Here, we provide new molybdenum and iron isotopic data from shallow marine carbonate and silicate iron formations of the Koegas Subgroup, South Africa, that confirm local ocean redox stratification prior to the GOE. Mn concentrations correlate negatively with both δ98 Mo and δ56 Fe values, which highlights the substantial role of particulate manganese for the cycling of Mo and Fe in the Paleoproterozoic oceans. Based on these trends we propose that pore water molybdate was recharged (1) by the diffusional transport of seawater molybdate with high δ98 Mo and (2) by the re-liberation of adsorbed molybdate with low δ98 Mo during Mn oxide dissolution within the sediment. The relative contribution of isotopically light Mo is highest close to a Mn chemocline, where the flux of Mn oxides is largest, causing the negative correlation of Mn concentrations and δ98 Mo values in the Koegas sediments. The negative correlation between δ56 Fe values and Mn concentrations is likely related to Fe isotope fractionation during Fe(II) oxidation by Mn oxides, resulting in lower δ56 Fe values in the uppermost water column close to a Mn chemocline. We argue that the preservation of these signals within Paleoproterozoic sediments implies the existence of vertically extended chemoclines with a smoother gradient, probably as a result of low atmospheric oxygen concentrations. Furthermore, we suggest that abiotic oxidation of Fe(II) by a Mn oxide particle shuttle might have promoted the deposition of the Koegas iron formations.

Engaging the Public in the Citizen Science GLOBE at Night Campaign

NASA Astrophysics Data System (ADS)

Walker, Constance E.; Sparks, R. T.; Pompea, S. M.

2011-05-01

The emphasis in the international star-hunting campaign, GLOBE at Night, is in bringing awareness to the public on issues of light pollution. Light pollution threatens not only observatory sites and our "right to starlight", but can affect energy consumption, wildlife and health. GLOBE at Night has successfully reached a few 100,000 citizen-scientists. What steps can be taken to improve it? To promote the campaign via popular social media, GLOBE at Night created Facebook and Twitter pages. To increase participation in the 2011 campaign, children and adults submitted their sky brightness measurements in real time with smart phones or tablets using the web application at www.globeatnight.org/webapp/. With smart phones and tablets, the location, date and time register automatically. For those without smart mobile devices, user-friendly tools on the GLOBE at Night report page were reconfigured to determine latitude and longitude more easily and accurately. To increase the robustness of the data, 2 new approaches were taken. GLOBE at Night prototyped an "Adopt a Street” program in Tucson. The aim was for people to adopt different major or semi-major streets and take measurements every mile or so for the length of the street. The grid of measurements would canvas the town, allowing for comparisons of light levels over time (hours, days, years) or search for dark sky oases or light polluted areas. The increase to 2 campaigns in 2011 re-enforces these studies. The intent is to offer the program year-round for seasonal studies. The data can also be used to compare with datasets on wildlife, health, and energy consumption. Recently, NOAO and the Arizona Game and Fish Department have started a project with GLOBE at Night data and bat telemetry to examine a dark skies corridor in Tucson where the endangered bats fly. In our presentation, results of our efforts are discussed.

Optimizing de novo transcriptome assembly and extending genomic resources for striped catfish (Pangasianodon hypophthalmus).

PubMed

Thanh, Nguyen Minh; Jung, Hyungtaek; Lyons, Russell E; Njaci, Isaac; Yoon, Byoung-Ha; Chand, Vincent; Tuan, Nguyen Viet; Thu, Vo Thi Minh; Mather, Peter

2015-10-01

Striped catfish (Pangasianodon hypophthalmus) is a commercially important freshwater fish used in inland aquaculture in the Mekong Delta, Vietnam. The culture industry is facing a significant challenge however from saltwater intrusion into many low topographical coastal provinces across the Mekong Delta as a result of predicted climate change impacts. Developing genomic resources for this species can facilitate the production of improved culture lines that can withstand raised salinity conditions, and so we have applied high-throughput Ion Torrent sequencing of transcriptome libraries from six target osmoregulatory organs from striped catfish as a genomic resource for use in future selection strategies. We obtained 12,177,770 reads after trimming and processing with an average length of 97bp. De novo assemblies were generated using CLC Genomic Workbench, Trinity and Velvet/Oases with the best overall contig performance resulting from the CLC assembly. De novo assembly using CLC yielded 66,451 contigs with an average length of 478bp and N50 length of 506bp. A total of 37,969 contigs (57%) possessed significant similarity with proteins in the non-redundant database. Comparative analyses revealed that a significant number of contigs matched sequences reported in other teleost fishes, ranging in similarity from 45.2% with Atlantic cod to 52% with zebrafish. In addition, 28,879 simple sequence repeats (SSRs) and 55,721 single nucleotide polymorphisms (SNPs) were detected in the striped catfish transcriptome. The sequence collection generated in the current study represents the most comprehensive genomic resource for P. hypophthalmus available to date. Our results illustrate the utility of next-generation sequencing as an efficient tool for constructing a large genomic database for marker development in non-model species. Copyright © 2015 Elsevier B.V. All rights reserved.

What determines neurogenic competence in glia?

PubMed

Costa, Marcos Romualdo; Götz, Magdalena; Berninger, Benedikt

2010-05-01

One of the most intriguing discoveries during the last decade of developmental neurobiology is the fact that both in the developing and adult nervous system neural stem cells often turn out to have a glial identity: Radial glia generates neurons in the developing telencephalon of fish, birds and mammals and astro/radial glial stem cells in specialized neurogenic zones give rise to new neurons throughout life. What are the extrinsic signals acting on and the intrinsic signals acting within these glial populations endowing these with a neurogenic potential, whilst most other glia seemingly lack it? Studies on postnatal astroglia shed interesting light on this question as they are the intermediate between neurogenic radial glia and mature parenchymal astrocytes. At least in vitro their decision to acquire a glial fate is not yet irrevocable as forced expression of a single neurogenic transcription factor enables them to transgress their lineage and to give rise to fully functional neurons acquiring specific subtype characteristics. But even bona fide non-neurogenic glia in the adult nervous system can regain some of their radial glial heritage following injury as exemplified by reactive astroglia in the cerebral cortex and Müller glia in the retina. In this review first we will follow the direction of the physiological times' arrow, along which radial glia become transformed on one side into mature astrocytes gradually losing their neurogenic potential, while some of them seem to escape this dire destiny to settle in the few neurogenic oases of the adult brain where they generate neurons and glia throughout life. But we will also see how pathophysiological conditions partially can reverse the arrow of time reactivating the parenchymal astroglia to re-acquire some of the hallmarks of neural stem cells or progenitors. We will close this review with some thoughts on the surprising compatibility of the co-existence of a neural stem cell and glial identity within the very

The corrosive well waters of Egypt's western desert

USGS Publications Warehouse

Clarke, Frank Eldridge

1979-01-01

The discovery that ground waters of Egypt's Western Desert are highly corrosive is lost in antiquity. Inhabitants of the oases have been aware of the troublesome property for many decades and early investigators mention it in their reports concerning the area. Introduction of modern well-drilling techniques and replacements of native wood casing with steel during the 20th century increased corrosion problems and, in what is called the New Valley Project, led to an intense search for causes and corrective treatments. This revealed that extreme corrosiveness results from combined effects of relatively acidic waters with significant concentrations of destructive sulfide ion; unfavorable ratios of sulfate and chloride to less aggressive ions; mineral equilibria and electrode potential which hinder formation of protective films; relative high chemical reaction rates because of abnormal temperatures, and high surface velocities related to well design. There is general agreement among investigators that conventional corrosion control methods such as coating metal surfaces, chemical treatment of the water, and electrolytic protection with impressed current and sacrificial electrodes are ineffective or impracticable for wells in the Western Desert's New Valley. Thus, control must be sought through the use of materials more resistant to corrosion than plain carbon steel wherever well screens and casings are necessary. Of the alternatives considered, stainless steel appears to. be the most promising where high strength and long-term services are required and the alloy's relatively high cost is acceptable. Epoxy resin-bonded fiberglass and wood appear to be practicable, relatively inexpensive alternatives for installations which do. not exceed their strength limitations. Other materials such as high strength aluminum and Monel Metal have shown sufficient promise to. merit their consideration in particular locations and uses. The limited experience with pumping in these desert

Data Publishing Services in a Scientific Project Platform

NASA Astrophysics Data System (ADS)

Schroeder, Matthias; Stender, Vivien; Wächter, Joachim

2014-05-01

Data-intensive science lives from data. More and more interdisciplinary projects are aligned to mutually gain access to their data, models and results. In order to achieving this, an umbrella project GLUES is established in the context of the "Sustainable Land Management" (LAMA) initiative funded by the German Federal Ministry of Education and Research (BMBF). The GLUES (Global Assessment of Land Use Dynamics, Greenhouse Gas Emissions and Ecosystem Services) project supports several different regional projects of the LAMA initiative: Within the framework of GLUES a Spatial Data Infrastructure (SDI) is implemented to facilitate publishing, sharing and maintenance of distributed global and regional scientific data sets as well as model results. The GLUES SDI supports several OGC webservices like the Catalog Service Web (CSW) which enables it to harvest data from varying regional projects. One of these regional projects is SuMaRiO (Sustainable Management of River Oases along the Tarim River) which aims to support oasis management along the Tarim River (PR China) under conditions of climatic and societal changes. SuMaRiO itself is an interdisciplinary and spatially distributed project. Working groups from twelve German institutes and universities are collecting data and driving their research in disciplines like Hydrology, Remote Sensing, and Agricultural Sciences among others. Each working group is dependent on the results of another working group. Due to the spatial distribution of participating institutes the data distribution is solved by using the eSciDoc infrastructure at the German Research Centre for Geosciences (GFZ). Further, the metadata based data exchange platform PanMetaDocs will be used by participants collaborative. PanMetaDocs supports an OAI-PMH interface which enables an Open Source metadata portal like GeoNetwork to harvest the information. The data added in PanMetaDocs can be labeled with a DOI (Digital Object Identifier) to publish the data and to

Ultrastructural and Single-Cell-Level Characterization Reveals Metabolic Versatility in a Microbial Eukaryote Community from an Ice-Covered Antarctic Lake

PubMed Central

Li, Wei; Podar, Mircea

2016-01-01

ABSTRACT The McMurdo Dry Valleys (MCM) of southern Victoria Land, Antarctica, harbor numerous ice-covered bodies of water that provide year-round liquid water oases for isolated food webs dominated by the microbial loop. Single-cell microbial eukaryotes (protists) occupy major trophic positions within this truncated food web, ranging from primary producers (e.g., chlorophytes, haptophytes, and cryptophytes) to tertiary predators (e.g., ciliates, dinoflagellates, and choanoflagellates). To advance the understanding of MCM protist ecology and the roles of MCM protists in nutrient and energy cycling, we investigated potential metabolic strategies and microbial interactions of key MCM protists isolated from a well-described lake (Lake Bonney). Fluorescence-activated cell sorting (FACS) of enrichment cultures, combined with single amplified genome/amplicon sequencing and fluorescence microscopy, revealed that MCM protists possess diverse potential metabolic capabilities and interactions. Two metabolically distinct bacterial clades (Flavobacteria and Methylobacteriaceae) were independently associated with two key MCM lake microalgae (Isochrysis and Chlamydomonas, respectively). We also report on the discovery of two heterotrophic nanoflagellates belonging to the Stramenopila supergroup, one of which lives as a parasite of Chlamydomonas, a dominate primary producer in the shallow, nutrient-poor layers of the lake. IMPORTANCE Single-cell eukaryotes called protists play critical roles in the cycling of organic matter in aquatic environments. In the ice-covered lakes of Antarctica, protists play key roles in the aquatic food web, providing the majority of organic carbon to the rest of the food web (photosynthetic protists) and acting as the major consumers at the top of the food web (predatory protists). In this study, we utilized a combination of techniques (microscopy, cell sorting, and genomic analysis) to describe the trophic abilities of Antarctic lake protists and

A transcriptomic insight into the infective juvenile stage of the insect parasitic nematode, Heterorhabditis indica.

PubMed

Somvanshi, Vishal S; Gahoi, Shachi; Banakar, Prakash; Thakur, Prasoon Kumar; Kumar, Mukesh; Sajnani, Manisha; Pandey, Priyatama; Rao, Uma

2016-03-01

Nematodes are the most numerous animals in the soil. Insect parasitic nematodes of the genus Heterorhabditis are capable of selectively seeking, infecting and killing their insect-hosts in the soil. The infective juvenile (IJ) stage of the Heterorhabditis nematodes is analogous to Caenorhabditis elegans dauer juvenile stage, which remains in 'arrested development' till it finds and infects a new insect-host in the soil. H. indica is the most prevalent species of Heterorhabditis in India. To understand the genes and molecular processes that govern the biology of the IJ stage, and to create a resource to facilitate functional genomics and genetic exploration, we sequenced the transcriptome of H. indica IJs. The de-novo sequence assembly using Velvet-Oases pipeline resulted in 13,593 unique transcripts at N50 of 1,371 bp, of which 53 % were annotated by blastx. H. indica transcripts showed higher orthology with parasitic nematodes as compared to free living nematodes. In-silico expression analysis showed 30 % of transcripts expressing with ≥100 FPKM value. All the four canonical dauer formation pathways like cGMP-PKG, insulin, dafachronic acid and TGF-β were active in the IJ stage. Several other signaling pathways were highly represented in the transcriptome. Twenty-four orthologs of C. elegans RNAi pathway effector genes were discovered in H. indica, including nrde-3 that is reported for the first time in any of the parasitic nematodes. An ortholog of C. elegans tol-1 was also identified. Further, 272 kinases belonging to 137 groups, and several previously unidentified members of important gene classes were identified. We generated high-quality transcriptome sequence data from H. indica IJs for the first time. The transcripts showed high similarity with the parasitic nematodes, M. hapla, and A. suum as opposed to C. elegans, a species to which H. indica is more closely related. The high representation of transcripts from several signaling pathways in the IJs

Towards a climate impact assessment of the Tarim River, NW China: integrated hydrological modelling using SWIM

NASA Astrophysics Data System (ADS)

Wortmann, Michel

2014-05-01

The Tarim River is the principle water source of the Xinjiang Uyghur Autonomous Region, NW China and the country's largest endorheic river, terminating in the Taklamakan desert. The vast majority of discharge is generated in the glaciated mountain ranges to the north (Tian Shan), south (Kunlun Shan/Tibetan Plateau) and west (Pamir Mountains) of the Taklamakan desert. The main water user is the intensive irrigation agriculture for mostly cotton and fruit production in linear river oases of the middle and lower reaches as well as a population of 10 Mil. people. Over the past 40 years, an increase in river discharge was reported, assumed to be caused by enhanced glacier melt due to a warming climate. Rapid population growth and economic development have led to a significant expansion of area under irrigation, resulting in water shortages for downstream users and the floodplain vegetation. Water resource planning and management of the Tarim require integrated assessment tools to examine changes under future climate change, land use and irrigation scenarios. The development of such tools, however, is challenged by sparse climate and discharge data as well as available data on water abstractions and diversions. The semi-distributed, process-based hydrological model SWIM (Soil and Water Integrated Model) was implemented for the headwater and middle reaches that generate over 90% of discharge, including the Aksu, Hotan and Yarkant rivers. It includes the representation of snow and glacier melt as well as irrigation abstractions. Once calibrated and validated to river discharge, the model is used to analyse future climate scenarios provided by one physically-based and one statistical regional climate model (RCM). Preliminary results of the model calibration and validation indicate that SWIM is able simulate river discharge adequately, despite poor data conditions. Snow and glacier melt account for the largest share in river discharge. The modelling results will devise

Chronology of Ksar Akil (Lebanon) and Implications for the Colonization of Europe by Anatomically Modern Humans

PubMed Central

Douka, Katerina; Bergman, Christopher A.; Hedges, Robert E. M.; Wesselingh, Frank P.; Higham, Thomas F. G.

2013-01-01

The Out-of-Africa model holds that anatomically modern humans (AMH) evolved and dispersed from Africa into Asia, and later Europe. Palaeoanthropological evidence from the Near East assumes great importance, but AMH remains from the region are extremely scarce. ‘Egbert’, a now-lost AMH fossil from the key site of Ksar Akil (Lebanon) and ‘Ethelruda’, a recently re-discovered fragmentary maxilla from the same site, are two rare examples where human fossils are directly linked with early Upper Palaeolithic archaeological assemblages. Here we radiocarbon date the contexts from which Egbert and Ethelruda were recovered, as well as the levels above and below the findspots. In the absence of well-preserved organic materials, we primarily used marine shell beads, often regarded as indicative of behavioural modernity. Bayesian modelling allows for the construction of a chronostratigraphic framework for Ksar Akil, which supports several conclusions. The model-generated age estimates place Egbert between 40.8–39.2 ka cal BP (68.2% prob.) and Ethelruda between 42.4–41.7 ka cal BP (68.2% prob.). This indicates that Egbert is of an age comparable to that of the oldest directly-dated European AMH (Peştera cu Oase). Ethelruda is older, but on current estimates not older than the modern human teeth from Cavallo in Italy. The dating of the so-called “transitional” or Initial Upper Palaeolithic layers of the site may indicate that the passage from the Middle to Upper Palaeolithic at Ksar Akil, and possibly in the wider northern Levant, occurred later than previously estimated, casting some doubts on the assumed singular role of the region as a locus for human dispersals into Europe. Finally, tentative interpretations of the fossil's taxonomy, combined with the chronometric dating of Ethelruda's context, provides evidence that the transitional/IUP industries of Europe and the Levant, or at least some of them, may be the result of early modern human migration(s). PMID

Sea Ice as a Sink for CO2 and Biogeochemical Material: a Novel Sampling Method and Astrobiological Applications

NASA Astrophysics Data System (ADS)

Wilner, J.; Hofmann, A.; Hand, K. P.

2017-12-01

oases analogous to icy ocean worlds.

[Migration phenomena and urbanization as an object lesson: Mauritania].

PubMed

Fahem, A K

1993-03-01

Mauritania had been a country of nomads traveling long distances to water holes, cemeteries, and oases. A teacher was responsible for teaching young children about the Koran. The best students attended a traveling university to receive personalized teaching at a higher level. Between 1965 and 1988, the spatial distribution of the population changed considerably (nomads, 78% vs. 12%; settled rural dwellers, 15% vs. 41% [45% in 1977]; urban dwellers, 8% vs. 47%). The leading reasons for a settled life, especially in 1965-1980, were desertification and aridity and their effects on water sources and grazing lands. Other contributing factors included iron and copper mining, creation of new states after the war in the Western Sahara, birth of new towns (e.g., the capital Nouakchott), and suppression of slavery. Urbanization grew 10%/year (20%/year for Nouakchott between 1962-1977) after independence. The new towns were mining and industrial centers. Spatial redistribution of the population is a vast and fruitful subject to include in teaching curricula at all levels (primary, secondary, and postsecondary) and for almost all disciplines (e.g., geography, history, civics, and mathematics). The author has provided a model curriculum for grades 1 through 6 of primary school. For example, contents for 6th grade history and geography include causes for the shift from a nomadic lifestyle to a sedentary lifestyle and urbanization, impact on the family and the environment, international migrations, and case study of a town. The author also lists comprehensive knowledge, proficiency, and behavior objectives. Behavior objectives are: participant in manual activities and agricultural work; help uprooted classmates better integrate themselves in a new welcoming milieu; support rural development efforts; and preserve or strengthen links between the city and rural areas through exchange visits and correspondence. Using arrows on a map to show the flow of nomads from departure zones to

Ultrastructural and Single-Cell-Level Characterization Reveals Metabolic Versatility in a Microbial Eukaryote Community from an Ice-Covered Antarctic Lake.

PubMed

Li, Wei; Podar, Mircea; Morgan-Kiss, Rachael M

2016-06-15

The McMurdo Dry Valleys (MCM) of southern Victoria Land, Antarctica, harbor numerous ice-covered bodies of water that provide year-round liquid water oases for isolated food webs dominated by the microbial loop. Single-cell microbial eukaryotes (protists) occupy major trophic positions within this truncated food web, ranging from primary producers (e.g., chlorophytes, haptophytes, and cryptophytes) to tertiary predators (e.g., ciliates, dinoflagellates, and choanoflagellates). To advance the understanding of MCM protist ecology and the roles of MCM protists in nutrient and energy cycling, we investigated potential metabolic strategies and microbial interactions of key MCM protists isolated from a well-described lake (Lake Bonney). Fluorescence-activated cell sorting (FACS) of enrichment cultures, combined with single amplified genome/amplicon sequencing and fluorescence microscopy, revealed that MCM protists possess diverse potential metabolic capabilities and interactions. Two metabolically distinct bacterial clades (Flavobacteria and Methylobacteriaceae) were independently associated with two key MCM lake microalgae (Isochrysis and Chlamydomonas, respectively). We also report on the discovery of two heterotrophic nanoflagellates belonging to the Stramenopila supergroup, one of which lives as a parasite of Chlamydomonas, a dominate primary producer in the shallow, nutrient-poor layers of the lake. Single-cell eukaryotes called protists play critical roles in the cycling of organic matter in aquatic environments. In the ice-covered lakes of Antarctica, protists play key roles in the aquatic food web, providing the majority of organic carbon to the rest of the food web (photosynthetic protists) and acting as the major consumers at the top of the food web (predatory protists). In this study, we utilized a combination of techniques (microscopy, cell sorting, and genomic analysis) to describe the trophic abilities of Antarctic lake protists and their potential

Authigenic minerals related to carbon and sulfur biogeochemical cycling from deep-sea active methane seeps offshore South-West Africa

NASA Astrophysics Data System (ADS)

Pierre, C.; Blanc-Valleron, M.; Demange, J.; Boudouma, O.; Pape, T.; Himmler, T.; Fekete, N.; Spiess, V.

2011-12-01

The South-West African continental margin is well known for occurrences of active methane-rich fluid seeps that are associated with seafloor pockmarks in a broad range of water depths, from the shelf to the deep basins. High gas flares in the water column, luxurious oases of benthic fauna, gas hydrate accumulations and diagenetic carbonate crusts have been observed at these seeps. During the M76/3a expedition of R/V METEOR (summer 2008) gravity cores recovered abundant authigenic carbonate concretions from five pockmarks of the South-West African margin including previously studied sites (Hydrate Hole, Worm Hole, Regab Pockmark) and two sites (Deep Hole, Baboon Cluster) newly discovered during the cruise. Carbonate concretions were mostly associated to sediments settled by seep-associated benthic macrofauna and bearing shallow gas hydrates. We present new results of the comprehensive analysis of the mineralogy and isotope geochemistry of the diagenetic carbonates sampled in the five pockmarks. The mineralogy of authigenic carbonates is dominated by magnesian calcite and aragonite, associated occasionally with dolomite. The oxygen and carbon isotopic compositions of authigenic carbonates (+2.4 < δ18O % V-PDB < +6.2 ; -61.0 < δ13C % V-PDB < -40.1) indicate that microbial anaerobic oxidation of methane (AOM) was the main process controling carbonate precipitation within sub-seafloor sediments deposited from the glacial-time up to the present. The frequent occurrence of diagenetic gypsum crystals within the sediments demonstrates that bio-irrigation with oxygenated bottom water by the burrowing activity of benthic fauna caused the secondary oxidation of reduced sulfur (hydrogen sulfide and pyrite) that was produced by sulfate reducting bacteria as a by-product of AOM; during the sulfide oxidation process, the released acidity induced the partial dissolution of carbonates. Our results demonstrate also the strong link that existed between the carbon and sulfur cycles

Ultrastructural and Single-Cell-Level Characterization Reveals Metabolic Versatility in a Microbial Eukaryote Community from an Ice-Covered Antarctic Lake

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Wei; Podar, Mircea; Morgan-Kiss, Rachael M.

The McMurdo Dry Valleys (MCM) of southern Victoria Land, Antarctica, harbor numerous ice-covered bodies of water that provide year-round liquid water oases for isolated food webs dominated by the microbial loop. Single-cell microbial eukaryotes (protists) occupy major trophic positions within this truncated food web, ranging from primary producers (e.g., chlorophytes, haptophytes, and cryptophytes) to tertiary predators (e.g., ciliates, dinoflagellates, and choanoflagellates). To advance the understanding of MCM protist ecology and the roles of MCM protists in nutrient and energy cycling, we investigated potential metabolic strategies and microbial interactions of key MCM protists isolated from a well-described lake (Lake Bonney). Fluorescence-activatedmore » cell sorting (FACS) of enrichment cultures, combined with single amplified genome/amplicon sequencing and fluorescence microscopy, revealed that MCM protists possess diverse potential metabolic capabilities and interactions. Two metabolically distinct bacterial clades (FlavobacteriaandMethylobacteriaceae) were independently associated with two key MCM lake microalgae (IsochrysisandChlamydomonas, respectively). We also report on the discovery of two heterotrophic nanoflagellates belonging to the Stramenopila supergroup, one of which lives as a parasite ofChlamydomonas, a dominate primary producer in the shallow, nutrient-poor layers of the lake. Single-cell eukaryotes called protists play critical roles in the cycling of organic matter in aquatic environments. In the ice-covered lakes of Antarctica, protists play key roles in the aquatic food web, providing the majority of organic carbon to the rest of the food web (photosynthetic protists) and acting as the major consumers at the top of the food web (predatory protists). In this study, we utilized a combination of techniques (microscopy, cell sorting, and genomic analysis) to describe the trophic abilities of Antarctic lake protists and their potential

The role of sedimentology, oceanography, and alteration on the δ56Fe value of the Sokoman Iron Formation, Labrador Trough, Canada

NASA Astrophysics Data System (ADS)

Raye, Urmidola; Pufahl, Peir K.; Kyser, T. Kurtis; Ricard, Estelle; Hiatt, Eric E.

2015-09-01

The Sokoman Formation is a ca. 100-m-thick succession of interbedded iron formation and fine-grained siliciclastics deposited at 1.88 Ga. Accumulation occurred on a dynamic paleoshelf where oxygen stratification, coastal upwelling of hydrothermally derived Fe and Si, microbial processes, tide and storm currents, diagenesis, and low-grade prehnite-pumpellyite metamorphism controlled lithofacies character and produced complex associations of multigenerational chert, hematite, magnetite, greenalite, stilpnomelane and Fe carbonate. Hematite-rich facies were deposited along suboxic segments of the coastline where photosynthetic oxygen oases impinged on the seafloor. Hematitic, cross-stratified grainstones were formed by winnowing and reworking of freshly precipitated Fe-(oxyhydr)oxide and opal-A by waves and currents into subaqueous dunes. Magnetite-rich facies contain varying proportions of greenalite and stilpnomelane and record deposition in anoxic middle shelf environments beneath an oxygen chemocline. Minor negative Ce anomalies in hematitic facies, but prominent positive Ce and Eu anomalies and high LREE/HREE ratios in magnetite-rich facies imply the existence of a weakly oxygenated surface ocean above anoxic bottom waters. The Fe isotopic composition of 31 whole rock (-0.46 ⩽ δ56Fe ⩽ 0.47‰) and 21 magnetite samples (-0.29 ⩽ δ56Fe ⩽ 0.22‰) from suboxic and anoxic lithofacies was controlled primarily by the physical oceanography of the paleoshelf. Despite low-grade metamorphism recorded by the δ18O values of paragenetically related quartz and magnetite, the Sokoman Formation preserves a robust primary Fe isotopic signal. Coastal upwelling is interpreted to have affected the isotopic equilibria between Fe2+aq and Fe-(oxyhydr)oxide in open marine versus coastal environments, which controlled the Fe isotopic composition of lithofacies. Unlike previous work that focuses on microbial and abiotic fractionation processes with little regard for

Precipitation Dynamics and Feedback mechanisms of the Arabian Desert

NASA Astrophysics Data System (ADS)

Burger, Roelof; Kucera, Paul; Piketh, Stuart; Axisa, Duncan; Chapman, Michael; Krauss, Terry; Ghulam, Ayman

2010-05-01

The subtropical Arabian desert extends across the entire Peninsula. The Arabian desert finds itself in the downward branch of the Hadley cell with persistent subsidence. This stabilizes the atmosphere and lowers the relative humidity. The result is a strongly capped convective boundary layer and an extremely dry mid troposphere. Most of the area experience very little rainfall, generally below 100 mm per year, resulting in the largest uninterrupted sand desert in the world. However, local factors such as an unbroken 1000 km escarpment along the Red Sea, rocky mountains between 2000 and 3000 m, and gravel plains cut by wadis, causes micro climates with significant altered precipitation characteristics. Altitude oases with annual rainfall between 200 mm and 500 mm are found on the Asir mountains in the south west and over the Jebel Akdhar mountains on the Gulf coast of Oman. This region receives most of its rainfall in the Northern Hemisphere summer driven by a monsoon trough and the ITCZ. During summer, moist surface winds from the Red Sea converges with dry easterlies triggering convection along the Asir escarpment on a daily basis. Clear mornings grow into a layer of Altocumulus stratiformis cumulogenites by noon, which usually last until sunset. This cloud deck interacts with large severe convective cells which grow to the top of the troposphere by mid afternoon. The north experience a mediterranean climate with eastward propagating midlatitude cyclones causing wintertime rainfall. Characteristic cloud bands form over the northern interior. Vertically layered embedded convective cells that are not coupled with the surface propagate on north easterly tracks. This result in another oasis with annual rainfall exceeding 200 mm. Surface based convection causes isolated thunderstorms during spring and early summer, but cloud bases increase as the season progress until the evaporating downdraft causes dust storms. In-situ measurements, WRF model runs, radiosonde ascends

Sources identification and pollution evaluation of heavy metals in the surface sediments of Bortala River, Northwest China.

PubMed

Zhang, Zhaoyong; Juying, Li; Mamat, Zulpiya; QingFu, Ye

2016-04-01

The current study focused on the Bortala River - a typical inland river located in an oasis of arid area in northwestern China. The sediment and soil samples were collected from the river and drainage basin. Results showed that: (1) the particle size of the sand fraction of the sediments was 78-697 µm, accounting for 78.82% of the total samples; the average concentrations of eight heavy metals fell within the concentration ranges recommended by the Secondary National Standard of China, while the maximum concentrations of Pb, Cd, and Hg exceeded these standards; (2) results from multivariate statistical analysis indicated that Cu, Ni, As, and Zn originated primarily from natural geological background, while Cd, Pb, Hg and Cr in the sediments originated from human activities; (3) results of the enrichment factor analysis and the geo-accumulation index evaluation showed that Cd, Hg, and Pb were present in the surface sediments of the river at low or partial serious pollution levels, while Zn, Cr, As, Ni, and Cu existed at zero or low pollution levels; (4) calculation of the potential ecological hazards index showed that among the eight tested heavy metals, Cd, Pb, Hg, and Cr were the main potential ecological risk factors, with relative contributions of 25.43%, 22.23%, 21.16%, and 14.87%, respectively; (5) the spatial distribution of the enrichment factors (EF(S)), the Geo-accumulation index (I(geo)), and the potential ecological risk coefficient (E(r)(i)) for eight heavy metals showed that there was a greater accumulation of heavy metals Pb, Cd, and Hg in the sediments of the central and eastern parts of the river. Results of this research can be a reference for the heavy metals pollution prevention, the harmony development of the ecology protection and the economy development of the oases of inland river basin of arid regions of China, Central Asia and also other parts of the world. Copyright © 2015 Elsevier Inc. All rights reserved.

Ultrastructural and Single-Cell-Level Characterization Reveals Metabolic Versatility in a Microbial Eukaryote Community from an Ice-Covered Antarctic Lake

DOE PAGES

Li, Wei; Podar, Mircea; Morgan-Kiss, Rachael M.

2016-04-15

The McMurdo Dry Valleys (MCM) of southern Victoria Land, Antarctica, harbor numerous ice-covered bodies of water that provide year-round liquid water oases for isolated food webs dominated by the microbial loop. Single-cell microbial eukaryotes (protists) occupy major trophic positions within this truncated food web, ranging from primary producers (e.g., chlorophytes, haptophytes, and cryptophytes) to tertiary predators (e.g., ciliates, dinoflagellates, and choanoflagellates). To advance the understanding of MCM protist ecology and the roles of MCM protists in nutrient and energy cycling, we investigated potential metabolic strategies and microbial interactions of key MCM protists isolated from a well-described lake (Lake Bonney). Fluorescence-activatedmore » cell sorting (FACS) of enrichment cultures, combined with single amplified genome/amplicon sequencing and fluorescence microscopy, revealed that MCM protists possess diverse potential metabolic capabilities and interactions. Two metabolically distinct bacterial clades (FlavobacteriaandMethylobacteriaceae) were independently associated with two key MCM lake microalgae (IsochrysisandChlamydomonas, respectively). We also report on the discovery of two heterotrophic nanoflagellates belonging to the Stramenopila supergroup, one of which lives as a parasite ofChlamydomonas, a dominate primary producer in the shallow, nutrient-poor layers of the lake. Single-cell eukaryotes called protists play critical roles in the cycling of organic matter in aquatic environments. In the ice-covered lakes of Antarctica, protists play key roles in the aquatic food web, providing the majority of organic carbon to the rest of the food web (photosynthetic protists) and acting as the major consumers at the top of the food web (predatory protists). In this study, we utilized a combination of techniques (microscopy, cell sorting, and genomic analysis) to describe the trophic abilities of Antarctic lake protists and their potential

Climate change impacts on water availability: developing regional scenarios for agriculture of the Former Soviet Union countries of Central Asia

NASA Astrophysics Data System (ADS)

Kirilenko, A.; Dronin, N.

2010-12-01

Water is the major factor, limiting agriculture of the five Former Soviet Union (FSU) of Central Asia. Elevated topography prevents moist and warm air from the Atlantic and Indian Oceans from entering the region.With exception of Kazakhstan, agriculture is generally restricted to oases and irrigated lands along the major rivers and canals. Availability of water for irrigation is the major factor constraining agriculture in the region, and conflicts over water are not infrequent. The current water crisis in the region is largely due to human activity; however the region is also strongly impacted by the climate. In multiple locations, planned and autonomous adaptations to climate change have already resulted in changes in agriculture, such as a dramatic increase in irrigation, or shift in crops towards the ones better suited for warmer and dryer climate; however, it is hard to differentiate between the effects of overall management improvement and the avoidance of climate-related losses. Climate change will contribute to water problems, escalating irrigation demand during the drought period, and increasing water loss with evaporation. The future of the countries of the Aral Sea basin then depends on both the regional scenario of water management policy and a global scenario of climate change, and is integrated with global socioeconomic scenarios. We formulate a set of regional policy scenarios (“Business as Usual”, “Falling Behind” and “Closing the Gap”) and demonstrate how each of them corresponds to IPCC SRES scenarios, the latter used as an input to the General Circulation Models (GCMs). Then we discuss the relative effectiveness of the introduced scenarios for mitigating water problems in the region, taking into account the adaptation through changing water demand for agriculture. Finally, we introduce the results of multimodel analysis of GCM climate projections, especially in relation to the change in precipitation and frequency of droughts, and

Cell Membrane Fatty Acid Composition of Chryseobacterium frigidisoli PB4T, Isolated from Antarctic Glacier Forefield Soils, in Response to Changing Temperature and pH Conditions

PubMed Central

Bajerski, Felizitas; Wagner, Dirk; Mangelsdorf, Kai

2017-01-01

Microorganisms in Antarctic glacier forefields are directly exposed to the hostile environment of their habitat characterized by extremely low temperatures and changing geochemical conditions. To survive under those stress conditions microorganisms adapt, among others, their cell membrane fatty acid inventory. However, only little is known about the adaptation potential of microorganisms from Antarctic soil environments. In this study, we examined the adaptation of the cell membrane polar lipid fatty acid inventory of Chryseobacterium frigidisoli PB4T in response to changing temperature (0°C to 20°C) and pH (5.5 to 8.5) regimes, because this new strain isolated from an Antarctic glacier forefield showed specific adaptation mechanisms during its detailed physiological characterization. Flavobacteriaceae including Chryseobacterium species occur frequently in extreme habitats such as ice-free oases in Antarctica. C. frigidisoli shows a complex restructuring of membrane derived fatty acids in response to different stress levels. Thus, from 20°C to 10°C a change from less iso-C15:0 to more iso-C17:1ω7 is observed. Below 10°C temperature adaptation is regulated by a constant increase of anteiso-FAs and decrease of iso-FAs. An anteiso- and bis-unsaturated fatty acid, anteiso-heptadeca-9,13-dienoic acid, shows a continuous increase with decreasing cultivation temperatures underlining the particular importance of this fatty acid for temperature adaptation in C. frigidisoli. Concerning adaptation to changing pH conditions, most of the dominant fatty acids reveal constant relative proportions around neutral pH (pH 6–8). Strong variations are mainly observed at the pH extremes (pH 5.5 and 8.5). At high pH short chain saturated iso- and anteiso-FAs increase while longer chain unsaturated iso- and anteiso-FAs decrease. At low pH the opposite trend is observed. The study shows a complex interplay of different membrane components and provides, therefore, deep insights into

Using thallium isotopes in the 2.63 Ga Jeerinah Formation from Hamersley Basin, Western Australia, to constrain ancient seafloor oxygenation

NASA Astrophysics Data System (ADS)

Holdaway, B. J.; Owens, J. D.; Nielsen, S.; Anbar, A. D.; Ostrander, C. M.

2017-12-01

Understanding the chemical and biological innovation and evolution of the global ocean is pivotal in understanding the processes for how early life on Earth and potentially habitable planets advanced. Previous research on early-Earth oxygenation has revealed a rise in atmospheric [O2] 2.32 billion years ago, coined the Great Oxidation Event, or GOE. Many lines of evidence, however, suggest continental oxidative weathering as early as 3.0 Ga, with possibilities of complementary ocean oxygenation. Modeling of the geochemical data suggests small oxygen "oases" prior to whiffs of O2, or even widespread oxygen-rich margins. However, constraining the extent and timing of oceanic oxygenation is difficult as proxies fall short in detecting early ocean oxygenation. Importantly, the formation and preservation of manganese (Mn) in the form of manganese-oxides requires an oxygenated water-column that penetrates the sediment-water interface. Until recently, tracking the global burial of Mn-oxides was very difficult, largely compounded by an incomplete ancient geologic record. Here we use thallium (Tl), a new and novel isotope system to better constrain marine [O2], specifically by constraining the global burial of Mn-oxides. Recently, it has been shown that modern seawater Tl isotope composition is faithfully recorded in anoxic to euxinic (anoxic and sulfidic) sediments. Nearly all isotopic inputs: riverine, dust, volcanic, hydrothermal, and benthic recycling of Tl into the ocean are constant with ɛ205Tl -2. In contrast, the two primary outputs impart significant fractionations, these outputs being the burial of Mn-oxides (ɛ205Tl +12) and altered oceanic crust (ɛ205Tl -10). Thus, seawater is mainly dictated by the mass balance of the outputs (Mn-oxides and altered oceanic crust) which, for short-term events, is likely driven by the amount of Mn-oxide burial. Tl isotope analyses of the dominantly euxinic 2.5 Ga Mt. McRae Shale from the Hamersley Basin, Western Australia

Chemostratigraphy of the Sudbury impact basin fill: Volatile metal loss and post-impact evolution of a submarine impact basin

NASA Astrophysics Data System (ADS)

O'Sullivan, Edel M.; Goodhue, Robbie; Ames, Doreen E.; Kamber, Balz S.

2016-06-01

, could develop within the rims of large to giant impact structures. These hydrothermal systems did not require mid-ocean ridges and implicitly, the operation of plate tectonics. Regardless of hydrothermal input, enclosed submarine impact basins also provided diverse isolated environments (potential future oases) for the establishment of life.

Acoustic estimates of zooplankton and micronekton biomass in cyclones and anticyclones of the northeastern Gulf of Mexico

NASA Astrophysics Data System (ADS)

Ressler, Patrick Henry

2001-12-01

In the Gulf of Mexico (GOM), coarse to mesoscale eddies can enhance the supply of limiting nutrients into the euphotic zone, elevating primary production. This leads to 'oases' of enriched standing stocks of zooplankton and micronekton in otherwise oligotrophic deepwater (>200 m bottom depth). A combination of acoustic volume backscattering (Sv) measurements with an acoustic Doppler current profiler (ADCP) and concurrent net sampling of zooplankton and micronekton biomass in GOM eddy fields between October 1996 and November 1998 confirmed that cyclones and flow confluences were areas of locally enhanced Sv and standing stock biomass. Net samples were used both to 'sea-truth' the acoustic measurements and to assess the influence of taxonomic composition on measured Sv. During October 1996 and August 1997, a mesoscale (200--300 km diameter) cyclone-anticyclone pair in the northeastern GOM was surveyed as part of a cetacean (whale and dolphin) and seabird habitat, study. Acoustic estimates of biomass in the upper 10--50 m of the water column showed that the cyclone and flow confluence were enriched relative to anticyclonic Loop Current Eddies during both years. Cetacean and seabird survey results reported by other project researchers imply that these eddies provide preferential habitat because they foster locally higher concentrations of higher-trophic-level prey. Sv measurements in November 1997 and 1998 showed that coarse scale eddies (30--150 km diameter) probably enhanced nutrients and S, in the deepwater GOM within 100 km of the Mississippi delta, an area suspected to be important habitat for cetaceans and seabirds. Finally, Sv, data collected during November-December 1997 and October-December 1998 from a mooring at the head of DeSoto Canyon in the northeastern GOM revealed temporal variability at a single location: characteristic temporal decorrelation scales were 1 day (diel vertical migration of zooplankton and micronekton) and 5 days (advective processes). A

Transcriptome assembly, profiling and differential gene expression analysis of the halophyte Suaeda fruticosa provides insights into salt tolerance.

PubMed

Diray-Arce, Joann; Clement, Mark; Gul, Bilquees; Khan, M Ajmal; Nielsen, Brent L

2015-05-06

Improvement of crop production is needed to feed the growing world population as the amount and quality of agricultural land decreases and soil salinity increases. This has stimulated research on salt tolerance in plants. Most crops tolerate a limited amount of salt to survive and produce biomass, while halophytes (salt-tolerant plants) have the ability to grow with saline water utilizing specific biochemical mechanisms. However, little is known about the genes involved in salt tolerance. We have characterized the transcriptome of Suaeda fruticosa, a halophyte that has the ability to sequester salts in its leaves. Suaeda fruticosa is an annual shrub in the family Chenopodiaceae found in coastal and inland regions of Pakistan and Mediterranean shores. This plant is an obligate halophyte that grows optimally from 200-400 mM NaCl and can grow at up to 1000 mM NaCl. High throughput sequencing technology was performed to provide understanding of genes involved in the salt tolerance mechanism. De novo assembly of the transcriptome and analysis has allowed identification of differentially expressed and unique genes present in this non-conventional crop. Twelve sequencing libraries prepared from control (0 mM NaCl treated) and optimum (300 mM NaCl treated) plants were sequenced using Illumina Hiseq 2000 to investigate differential gene expression between shoots and roots of Suaeda fruticosa. The transcriptome was assembled de novo using Velvet and Oases k-45 and clustered using CDHIT-EST. There are 54,526 unigenes; among these 475 genes are downregulated and 44 are upregulated when samples from plants grown under optimal salt are compared with those grown without salt. BLAST analysis identified the differentially expressed genes, which were categorized in gene ontology terms and their pathways. This work has identified potential genes involved in salt tolerance in Suaeda fruticosa, and has provided an outline of tools to use for de novo transcriptome analysis. The

Study of the Microbial Diversity of a Newly Discovered East Antarctic Freshwater Lake, L27C, and of a Perennially Ice-Covered Lake Untersee

NASA Technical Reports Server (NTRS)

Huang, Jonathan P.; Hoover, Richard B.; Andersen, Dale; Bej, Asim K.

2010-01-01

The microbial communities that reside within freshwater lakes of Schirmacher and Untersee Oases in East Antarctica must cope with extreme conditions that may include cold temperature, annual freeze-thaw cycles, exposure to UV radiation, especially during the austral summer months, low light beneath thick ice-cover, followed by seasonal darkness. The objective of this study was to assess the microbial biodiversity and distribution from samples taken from two freshwater lakes (L27C and Lake Untersee) that were collected during the Tawani 2008 International Antarctic Expedition that conducted research in this region of Antarctica. L27C is a small, previously unreported lake residing 2 km WNW of Maitri Station at Schirmacher Oasis. Biodiversity and distribution of microorganisms within the lake were studied using both culture-independent and culture-dependent methodologies based upon the analysis of eubacterial 16S rRNA gene sequences. Lake Untersee, a perennially ice-covered, ultra-oligotrophic, lake in the Otto-von-Gruber-Gebirge (Gruber Mountains) of central Dronning Maud Land was also sampled and the microbial diversity was analyzed by eubacterial 16S rRNA gene sequences derived from pure cultures. Direct culturing of water samples from each lake on separate R2A growth medium exhibited a variety of microorganisms including: Janthinobacterium, Hymenobacter, Sphingamonas, Subtercola, Deinococcus, Arthrobacter, Flavobacterium, Polaromonas, Rhodoferax and Duganella. The evaluation of samples from L27C through culture-independent methodology identified a rich microbial diversity consisting of six different phyla of bacteria. The culture-independent analysis also displayed the majority of bacteria (56%) belonged to the Class gamma-proteobacteria within the phylum Proteobacteria. Within the Class gamma-proteobacteria, Acinetobacter dominated (48%) the total microbial load. Overall, L27C exhibited 7 different phyla of bacteria and 20 different genera. Statistical analysis

Anchoring durum wheat diversity in the reality of traditional agricultural systems: varieties, seed management, and farmers’ perception in two Moroccan regions

PubMed Central

2014-01-01

Background Traditional agrosystems are the places were crop species have evolved and continue to evolve under a combination of human and environmental pressures. A better knowledge of the mechanisms underlying the dynamics of crop diversity in these agrosystems is crucial to sustain food security and farmers’ self-reliance. It requires as a first step, anchoring a description of the available diversity in its geographical, environmental, cultural and socio-economic context. Methods We conducted interviews with farmers cultivating durum wheat in two contrasted traditional agrosystems of Morocco in the Pre-Rif (163 farmers) and in the oases of the Atlas Mountains (110 farmers). We documented the varietal diversity of durum wheat, the main characteristics of the farms, the farming and seed management practices applied to durum wheat, and the farmers’ perception of their varieties. Results As expected in traditional agrosystems, farmers largely practiced diversified subsistence agriculture on small plots and relied on on-farm seed production or informal seed exchange networks. Heterogeneity nevertheless prevailed on many variables, especially on the modernization of practices in the Pre-Rif region. Fourteen (resp. 11) traditional and 5 (resp. 3) modern varieties were identified in the Pre-Rif region (resp. in the Atlas Mountains). The majority of farmers grew a single variety, and most traditional varieties were distributed in restricted geographical areas. At the farm level, more than half of the varieties were renewed in the last decade in the Pre-Rif, a more rapid renewal than in the Atlas Mountain. Modern varieties were more prevalent in the Pre-Rif region and were integrated in the traditional practices of seed production, selection and exchange. They were clearly distinguished by the farmers from the landraces, the last ones being appreciated for their quality traits. Conclusions The surveyed traditional agrosystems constitute open, dynamic and heterogeneous

Indian Science Culture Needs a Paradigm Shift.

PubMed

Sharma, Om P

2017-06-01

There is a general impression in the scientific community in our country that the way science is taught, leant and the work culture of research and management of academic and research institutions is not conducive to cutting edge research, innovation and making world leaders. Mentoring continues to be poor with some exceptions. Very often, senior scientists with long innings in science teaching and research express anguish at the status quo in spite of a number of policy documents and recommendations for change. Indian science culture (teaching, research as well as administration) is a matter of prime concern and the issues cannot be pushed under the carpet if we desire a qualitative change. Most of the institutions of higher learning churn out graduates and post graduates who are largely unemployable. There are concerns on the number of Ph.Ds and not on the quality of Ph.D. One major consequence of the weak post graduates and Ph.Ds is the non-availability of competent faculty. Weakness and lack of interest in science learning starts from school. Learning continues to be by rote which is the prime reason for our low global rank in science and mathematics competence. Teaching and research apart there are umpteen other issues in over all culture of institutions and universities engaged in science teaching and research. Few oases of excellence are exceptions in the vast pool of mediocrity. Some points which need prime attention are: adoption of a tenure track system on the pattern of US institutions; feedback on and evaluation of teaching and mentoring; bottom up approach for candid feedback on issues which require long term solutions for efficiency and sound deliverables, cultivating the culture of working in front line areas, full transparency in working and an all out exit from culture of feudalism. This transformation needs commitment on the part of the politicians who man the respective departments of science education, research and human resource development. I

A transcriptome resource for the koala (Phascolarctos cinereus): insights into koala retrovirus transcription and sequence diversity.

PubMed

Hobbs, Matthew; Pavasovic, Ana; King, Andrew G; Prentis, Peter J; Eldridge, Mark D B; Chen, Zhiliang; Colgan, Donald J; Polkinghorne, Adam; Wilkins, Marc R; Flanagan, Cheyne; Gillett, Amber; Hanger, Jon; Johnson, Rebecca N; Timms, Peter

2014-09-11

The koala, Phascolarctos cinereus, is a biologically unique and evolutionarily distinct Australian arboreal marsupial. The goal of this study was to sequence the transcriptome from several tissues of two geographically separate koalas, and to create the first comprehensive catalog of annotated transcripts for this species, enabling detailed analysis of the unique attributes of this threatened native marsupial, including infection by the koala retrovirus. RNA-Seq data was generated from a range of tissues from one male and one female koala and assembled de novo into transcripts using Velvet-Oases. Transcript abundance in each tissue was estimated. Transcripts were searched for likely protein-coding regions and a non-redundant set of 117,563 putative protein sequences was produced. In similarity searches there were 84,907 (72%) sequences that aligned to at least one sequence in the NCBI nr protein database. The best alignments were to sequences from other marsupials. After applying a reciprocal best hit requirement of koala sequences to those from tammar wallaby, Tasmanian devil and the gray short-tailed opossum, we estimate that our transcriptome dataset represents approximately 15,000 koala genes. The marsupial alignment information was used to look for potential gene duplications and we report evidence for copy number expansion of the alpha amylase gene, and of an aldehyde reductase gene.Koala retrovirus (KoRV) transcripts were detected in the transcriptomes. These were analysed in detail and the structure of the spliced envelope gene transcript was determined. There was appreciable sequence diversity within KoRV, with 233 sites in the KoRV genome showing small insertions/deletions or single nucleotide polymorphisms. Both koalas had sequences from the KoRV-A subtype, but the male koala transcriptome has, in addition, sequences more closely related to the KoRV-B subtype. This is the first report of a KoRV-B-like sequence in a wild population. This transcriptomic

Region-wide glacier mass budgets and area changes for the Central Tien Shan between ~ 1975 and 1999 using Hexagon KH-9 imagery

NASA Astrophysics Data System (ADS)

Pieczonka, Tino; Bolch, Tobias

2015-05-01

The meltwater released by the glaciers in the Central Tien Shan feeds in particular the Tarim River which is the main artery for the oases at the northern margin of the Taklamakan desert. The correct assessment of the contribution of the glaciers' meltwater to the total runoff is hampered by the lack of long-term measurements of glacier mass budgets. Digital terrain models (DTMs) for the different regions in the Central Tien Shan were generated based on ~ 1975 KH-9 Hexagon imagery and compared to the SRTM3 DTM acquired in February 2000. Moreover, glacier area changes for the period ~ 1975-2008 have been measured by means of multi-temporal optical satellite imagery. The geodetic mass budget estimates for a glacierized area of 5000 km2 revealed increasing mass loss east to west and from the inner to the outer ranges. Highest mass loss accompanied by the most pronounced glacier retreat was found for the Ak-Shirak massif with a region-wide mass balance of - 0.51 ± 0.36 m w.e. a- 1 and a rate of area change of - 0.27 ± 0.15% a- 1, whilst moderate mass loss was observed for the Inylchek (0.20 ± 0.44 m w.e. a- 1) and Tomur area (0.33 ± 0.30 m w.e. a- 1) despite partly debris cover. These latter regions also revealed the lowest glacier shrinkage within the entire Central Tien Shan. The total glacier mass loss of 0.35 ± 0.34 m w.e. a- 1 is, however, within the global average whilst the glacier area shrinkage is comparatively low. On average, the investigated glacierized area of ~ 6600 km2 shrank by 0.11 ± 0.15% a- 1 only. We could also identify several surge-type glaciers. The results are consistent with in-situ mass balance measurements for Karabatkak Glacier and previously published results of the Ak-Shirak range proving the suitability of declassified imagery for glacier change investigations. The contribution to the runoff of Aksu River, the largest tributary of the Tarim River, due to glacier imbalance has been determined at ~ 20% for the 1975-2000 period.

Isotopic variability of cave bears (δ15N, δ13C) across Europe during MIS 3

NASA Astrophysics Data System (ADS)

Krajcarz, Magdalena; Pacher, Martina; Krajcarz, Maciej T.; Laughlan, Lana; Rabeder, Gernot; Sabol, Martin; Wojtal, Piotr; Bocherens, Hervé

2016-01-01

Collagen, the organic fraction of bone, records the isotopic parameters of consumed food for carbon (δ13C) and nitrogen (δ15N). This relationship of isotopic signature between diet and tissue is an important tool for the study of dietary preferences of modern and fossil animal species. Since the first information on the isotopic signature of cave bear was reported, numerous data from Europe have become available. The goal of this work is to track the geographical variation of cave bear collagen isotopic values in Europe during Marine Isotopic Stage 3 (about 60,000-25,000 yr BP). In this study the results of new δ13C and δ15N isotopic analyses of cave bear collagen from four Central-Eastern European sites are presented, as well as a review of all published isotopic data for cave bears of the same period. The main conclusion is a lack of geographical East-West pattern in the variations of δ13C and δ15N values of cave bear collagen. Moreover, no relationship was found between cave bear taxonomy and isotopic composition. The cave bears from Central-Eastern Europe exhibit δ13C and δ15N values near the average of the range of Central, Western and Southern European cave bears. Despite the fact that most cave bear sites follow an altitudinal gradient, separate groups of sites exhibit shift in absolute values of δ13C, what disturbs an altitude-related isotopic pattern. The most distinct groups are: high Alpine sites situated over 1500 m a.s.l. - in terms of δ13C; and two Romanian sites Peştera cu Oase and Urşilor - in case of δ15N. Although the cave bear isotopic signature is driven by altitude, the altitudinal adjustment of isotopic data is not enough to explain the isotopic dissimilarity of these cave bears. The unusually high δ15N signature of mentioned Romanian sites is an isolated case in Europe. Cave bears from relatively closely situated Central-Eastern European sites and other Romanian sites are more similar to Western European than to Romanian

Constructing engineers through practice: Gendered features of learning and identity development

NASA Astrophysics Data System (ADS)

Tonso, Karen L.

women's belonging. (3) Despite all of the pressures to do otherwise, (some) teams of students (at all levels) carved out small oases where "actual" engineering prevailed and women's participation was robust. Students--not faculty, not progressive pedagogy, not "reformed" courses--disrupted prevailing norms. However, two women engineering students, one on each senior team, performed fabulous "actual" engineering, yet neither of them had a job when they graduated--the only two senior students on my teams without jobs.

Hydrothermal vents and methane seeps: Rethinking the sphere of influence

USGS Publications Warehouse

Levin, Lisa A.; Baco, Amy; Bowden, David; Colaco, Ana; Cordes, Erik E.; Cunha, Marina; Demopoulos, Amanda W.J.; Gobin, Judith; Grupe, Ben; Le, Jennifer; Metaxas, Anna; Netburn, Amanda; Rouse, Greg; Thurber, Andrew; Tunnicliffe, Verena; Van Dover, Cindy L.; Vanreusel, Ann; Watling, Les

2016-01-01

Although initially viewed as oases within a barren deep ocean, hydrothermal vent and methane seep communities are now recognized to interact with surrounding ecosystems on the sea floor and in the water column, and to affect global geochemical cycles. The importance of understanding these interactions is growing as the potential rises for disturbance from oil and gas extraction, seabed mining and bottom trawling. Here we synthesize current knowledge of the nature, extent and time and space scales of vent and seep interactions with background systems. We document an expanded footprint beyond the site of local venting or seepage with respect to elemental cycling and energy flux, habitat use, trophic interactions, and connectivity. Heat and energy are released, global biogeochemical and elemental cycles are modified, and particulates are transported widely in plumes. Hard and biotic substrates produced at vents and seeps are used by “benthic background” fauna for attachment substrata, shelter, and access to food via grazing or through position in the current, while particulates and fluid fluxes modify planktonic microbial communities. Chemosynthetic production provides nutrition to a host of benthic and planktonic heterotrophic background species through multiple horizontal and vertical transfer pathways assisted by flow, gamete release, animal movements, and succession, but these pathways remain poorly known. Shared species, genera and families indicate that ecological and evolutionary connectivity exists among vents, seeps, organic falls and background communities in the deep sea; the genetic linkages with inactive vents and seeps and background assemblages however, are practically unstudied. The waning of venting or seepage activity generates major transitions in space and time that create links to surrounding ecosystems, often with identifiable ecotones or successional stages. The nature of all these interactions is dependent on water depth, as well as

Dust Propagation and Radiation In the Presence of a Low-level Jet in Central China on March 17, 2010

NASA Astrophysics Data System (ADS)

McDowell, B. K.; Chen, S. H.

2014-12-01

Suspended dust in the air can directly change the energy budget in the atmosphere and at the surface through scattering and absorption of radiation. Thus, dust can potentially modify the development of weather systems. To explore the dust-radiation effects on weather systems, a dust model was developed based on the Weather Research and Forecasting (WRF) model. The calculations of dust processes in the WRF dust model include emission, advection, boundary layer mixing, cumulus mixing, dust-radiation interaction, wet scavenging, and sedimentation. Due to a high vertical spatial resolution near the surface a time splitting method was applied to the calculation of dust sedimentation to relax the numerical time step. The "Hexi Corridor" is the historical name given to a string of oases along the northern slope of the Tibetan Plateau that formed a relatively easy transportation route between eastern China and central Asia. As trade developed over the centuries, this route became known as the Silk Road. This corridor also marks the transition from the relatively flat Gobi desert area in northern China to the elevated mountains of the Tibetan Plateau. These mountains present a southern barrier to the paths of dust storms that develop during spring outbreaks of the Mongolian Cyclone. In March of 2010, a series of dust storms developed in the Gobi Desert north of the Hexi Corridor that transported massive amounts of dust eastward to central and northeastern China, Korea and Japan. On March 17 during this event, a low-level jet developed along the northern perimeter of the Plateau, in alignment with upper level winds and the Hexi Corridor. Over the course of the day, a well-defined short-duration dust plume was emitted in the southern Gobi desert area and was transported over 1300 km in a southeast direction, over the Loess Plateau and into the Gansu Province. In this study, the interactions of synoptic conditions with regional topography that led to the development of the low

Quantitative sustainability and qualitative concerns in an irrigations system using recycled water to supplement limited groundwater supply

NASA Astrophysics Data System (ADS)

Gowing, John; Alataway, Abed

2013-04-01

Sustainability of irrigation in a country facing water scarcity depends upon adoption of best management practices to deliver 'more crop per drop' together with use of recycled waste-water from urban sewage systems. Saudi Arabia is a country facing extreme water scarcity and in this paper we report on research conducted at an extensive irrigation system where a concerted effort over several years has been devoted to achieving a high level of water productivity. Al-Ahsa oasis is located about 60 km inland from the Persian Gulf and has been inhabited since prehistoric times, due to the abundance of water in an otherwise arid region. It is one of the largest oases in the world with 12,000 hectares of irrigated land and more than 2 million palm trees. Historically the oasis was watered by over 60 artesian springs, but water is now pumped from the aquifer. To supplement this groundwater source, treated waste-water reuse has been practiced since 1992 and now comprises 30% of total supply. In addition, a comparable amount of agricultural drainage water is collected and recycled, so that the 'first-use' water represents only 40% of total irrigation supply. While this re-use system permits sustained irrigation with greatly reduced groundwater abstraction, there is a potential down-side in that fertilizers and contaminants applied with irrigation water move through the soil and return to the irrigation supply enhancing the risk for human and animal health. We investigated this problem using E coli and helminth eggs as indicators of human health risk. We sampled each of the three sources which are delivered separately to the head of the main irrigation canal where they are blended. The groundwater was free from E coli and helminths and the treated wastewater source was generally within designated quality standards. The recycled drainage water was delivered untreated into the canal system and was found to be contaminated with both E coli and helminths above acceptable

Concept for a Wireless Sensor Network to support GIS based water and land resource management in the Aksu-Tarim Basin, Xinjiang, China

NASA Astrophysics Data System (ADS)

Doluschitz, Reiner; Feike, Til

2013-04-01

Farmers in the oases along the Aksu-Tarim River suffer from severe seasonal water shortage caused by high fluctuations of river run-off. The uncertainty of water availability makes the planning of crop production and related investments extremely difficult. As a consequence farm management is often sub-optimal, manifesting in low input efficiencies, and the value generated in the agricultural sector being way below its potential. The "Tarim Basin Water Resource Bureau" (TBWRB) was founded in the 1990s. Its major task is to implement a basin wide water resources management plan, which involves fair allocation of water resources among the farmers in the different administrative units along the river. Among others, the lack of reliable and timely information on water quantities and qualities within the major water bodies of the basin hinders the implementation of an effective water management plan. Therefore we introduce the concept of a wireless sensor network (WSN) that provides reliable instantaneous information on the status of all important water resources within the basin. In the first step a GIS including all vital geospatial data, like river courses, channel and reservoir network and capacities, soil and land use map, is built. In the second step a WSN that monitors all important parameters at essential positions throughout the basin needs to be established. Measured parameters comprise meteorological data, river run-off, water levels of reservoirs, groundwater levels, and salinity levels of water resources. All data is centrally collected and processed by the TBWRB. Apart from generating a prompt and complete picture of currently available water resources, the TBWRB can use the system to record actual water allocation, and develop an early warning system for upcoming droughts or floods. Finally an integrated water and land management scheme can be established that allocates resources maximizing the benefits at basin level. Financed by public funding, the data

Our Light or Starlight? Citizen Science, Public Involvement and You

NASA Astrophysics Data System (ADS)

Walker, Constance E.

2010-10-01

With half of the world's population now living in cities, many urban dwellers have never experienced the wonderment of pristinely dark skies and maybe never will. Light pollution is obscuring people's long-standing natural heritage to view stars. The GLOBE at Night program (www.globeatnight.org) is an international citizen-science campaign to raise public awareness of the impact of light pollution by encouraging everyone everywhere to measure local levels of night sky brightness and contribute observations online to a world map. In the last 5 years, GLOBE at Night has been the most productive public light pollution monitoring campaign, collecting over 52,000 observations in a two-week period annually. This year, during the moonless two weeks in March, the campaign set a record high of over 17,800 measurements from people in 86 countries. Foundational resources are available to facilitate the public's participation in promoting dark skies awareness. The GLOBE at Night website explains clearly the simple-to-participate-in 5 step program and offers background information and interactive games on key concepts. The program has been expanded to include trainings of the general public, but especially educators in schools, museums and science centers, in unique ways. Education kits for dark skies awareness have been distributed at the training workshops. The kit includes material for a light shielding demonstration, a digital Sky Quality Meter and ``Dark Skies Rangers'' activities. The activities are on how unshielded light wastes energy, how light pollution affects wildlife and how you can participate in a citizen-science star-hunt like GLOBE at Night. In addition, projects are being developed for what to do with the data once it is taken. The GLOBE at Night data from different years can be compared to look for trends over time or with population density maps. The data can also be used to search for dark sky oases or to monitor lighting ordinance compliance. Most recently

GLOBE at Night: Raising Public Awareness and Involvement through Citizen Science

NASA Astrophysics Data System (ADS)

Walker, C. E.; Pompea, S. M.; Sparks, R. T.

2010-12-01

With half of the world’s population now living in cities, many urban dwellers have never experienced the wonderment of pristinely dark skies and maybe never will. Light pollution is obscuring people’s long-standing natural heritage to view stars. The GLOBE at Night program (www.globeatnight.org) is an international citizen-science campaign to raise public awareness of the impact of light pollution by encouraging everyone everywhere to measure local levels of night sky brightness and contribute observations online to a world map. In the last 5 years, GLOBE at Night has been the most productive public light pollution monitoring campaign, collecting over 52,000 observations in a two-week period annually. This year, during the moonless two weeks in March, the campaign set a record high of over 17,800 measurements from people in 86 countries. Foundational resources are available to facilitate the public’s participation in promoting dark skies awareness. The GLOBE at Night website explains clearly the simple-to-participate-in 5 step program and offers background information and interactive games on key concepts. The program has been expanded to include trainings of the general public, but especially educators in schools, museums and science centers, in unique ways. Education kits for dark skies awareness have been distributed at the training workshops. The kit includes material for a light shielding demonstration, a digital Sky Quality Meter and “Dark Skies Rangers” activities. The activities are on how unshielded light wastes energy, how light pollution affects wildlife and how you can participate in a citizen-science star-hunt like GLOBE at Night. In addition, projects are being developed for what to do with the data once it is taken. The GLOBE at Night data from different years can be compared to look for trends over time or with population density maps. The data can also be used to search for dark sky oases or to monitor lighting ordinance compliance. Most

The Martian Oasis Detector

NASA Astrophysics Data System (ADS)

Smith, P. H.; tomasko, M. G.; McEwen, A.; Rice, J.

2000-07-01

The next phase of unmanned Mars missions paves the way for astronauts to land on the surface of Mars. There are lessons to be learned from the unmanned precursor missions to the Moon and the Apollo lunar surface expeditions. These unmanned missions (Ranger, Lunar Orbiter, and Surveyor) provided the following valuable information, useful from both a scientific and engineering perspective, which was required to prepare the way for the manned exploration of the lunar surface: (1) high resolution imagery instrumental to Apollo landing site selection also tremendously advanced the state of Nearside and Farside regional geology; (2) demonstrated precision landing (less than two kilometers from target) and soft landing capability; (3) established that the surface had sufficient bearing strength to support a spacecraft; and (4) examination of the chemical composition and mechanical properties of the surface. The search for extinct or extant life on Mars will follow the water. However, geomorphic studies have shown that Mars has had liquid water on its surface throughout its geologic history. A cornucopia of potential landing sites with water histories (lakes, floodplains, oceans, deltas, hydrothermal regions) presently exist. How will we narrow down site selection and increase the likelihood of finding the signs of life? One way to do this is to identify 'Martian oases.' It is known that the Martian surface is often highly fractured and some areas have karst structures that support underground caves. Much of the water that formed the channels and valley networks is thought to be frozen underground. All that is needed to create the potential for liquid water is a near surface source of heat; recent lava flows and Martian meteorites attest to the potential for volcanic activity. If we can locate even one spot where fracturing, ice, and underground heat are co-located then we have the potential for an oasis. Such a discovery could truly excite the imaginations of both the

Another development with Women.

PubMed

Ahooja-patel, K

1982-01-01

The objective of this discussion of "Another Development with Women" is to add some thoughts to the scientific approach, which combines survey techniques and computer style data analysis (measurability, detachment, and objectivity). Its purpose is to tilt the balance of the development process a bit further towards women, and it proposes to introduce another element into the discussion on development with women--that of experiential knowledge (knowledge based on collective experience). Women researchers have a double consciousness, similar to that of the black or other discriminated minority, an awareness of the motives and strategies of the oppressor as well as the inner view of the oppressed. To find some answers to the question why the development debate is sometimes obscure, sometimes sterile, and usually frustrating, and to understand why the goals of development remain distant oases, it is necessary to turn attention to the actual contribution women are making to development. Fundamentally, most of women's activities seem to fall outside the definition of "gainful employment." The activities are labeled "nonmarket" or "nonmonetized" activities. It is the differential between work and creativity that fundamentally affects women and erodes their economic and social status. Another unperceived dimension to women's work, which further conceals their efforts and prevents them from surfacing, is the fact that until recently socioeconomic series and indicators were not desegregated by sex. Consequently, the available data on key economic and social questions could not answer the fundamental questions of where are women working, in what numbers, in which activities, and at what wage levels. During the last 2 years some global data for an international information base on women has become available, and the new data will make it possible to follow much more closely, and on a comparative basis for a much larger number of countries, new developments concerning women

AUV Reveals Deep-Water Coral Mound Distribution, Morphology and Oceanography in the Florida Straits

NASA Astrophysics Data System (ADS)

Grasmueck, M.; Eberli, G. P.; Viggiano, D. A.; Correa, T.; Rathwell, G.; Luo, J.

2006-12-01

state-of-the-art deepwater exploration tools is essential to understand and protect these slow growing and fragile oases which are resources for seafood, new medicines and long-term climate records. The AUV data will guide future sampling and monitoring to critical locations and provide the geospatial framework for making inventories of mound resources and designing research and management plans.

Can nitrate contaminated groundwater be remediated by optimizing flood irrigation rate with high nitrate water in a desert oasis using the WHCNS model?

PubMed

Liang, Hao; Qi, Zhiming; Hu, Kelin; Prasher, Shiv O; Zhang, Yuanpei

2016-10-01

Nitrate contamination of groundwater is an environmental concern in intensively cultivated desert oases where this polluted groundwater is in turn used as a major irrigation water resource. However, nitrate fluxes from root zone to groundwater are difficult to monitor in this complex system. The objectives of this study were to validate and apply the WHCNS (soil Water Heat Carbon Nitrogen Simulator) model to simulate water drainage and nitrate leaching under different irrigation and nitrogen (N) management practices, and to assess the utilization of groundwater nitrate as an approach to remediate nitrate contaminated groundwater while maintain crop yield. A two-year field experiment was conducted in a corn field irrigated with high nitrate groundwater (20 mg N L(-1)) in Alxa, Inner Mongolia, China. The experiment consisted of two irrigation treatments (Istd, standard, 750 mm per season; Icsv, conservation, 570 mm per season) factorially combined with two N fertilization treatments (Nstd, standard, 138 kg ha(-1); Ncsv, conservation, 92 kg ha(-1)). The validated results showed that the WHCNS model simulated values of crop dry matter, yield, soil water content and soil N concentration in soil profile all agreed well with the observed values. Compared to the standard water management (Istd), the simulated drainage and nitrate leaching decreased about 65% and 59%, respectively, under the conservation water management (Icsv). Nearly 55% of input N was lost by leaching under the IstdNstd and IstdNcsv treatments, compared to only 26% under the IcsvNstd and IcsvNcsv treatments. Simulations with more than 240 scenarios combing different levels of irrigation and fertilization indicated that irrigation was the main reason leading to the high risk of nitrate leaching, and the nitrate in irrigation groundwater can be best utilized without corn yield loss when the total irrigation was reduced from the current 750 mm to 491 mm. This reduced irrigation rate facilitated

Sinai Peninsula, Shaded Relief and Colored Height

NASA Technical Reports Server (NTRS)

2004-01-01

The Sinai Peninsula, located between Africa and Asia, is a result of those two continents pulling apart from each other. Earth's crust is cracking, stretching, and lowering along the two northern branches of the Red Sea, namely the Gulf of Suez, seen here on the west (left), and the Gulf of Aqaba, seen to the east (right). This color-coded shaded relief image shows the triangular nature of the peninsula, with the coast of the Mediterranean Sea forming the northern side of the triangle. The Suez Canal can be seen as the narrow vertical blue line in the upper left connecting the Red Sea to the Mediterranean.

The peninsula is divided into three distinct parts; the northern region consisting chiefly of sandstone, plains and hills, the central area dominated by the Tih Plateau, and the mountainous southern region where towering peaks abound. Much of the Sinai is deeply dissected by river valleys, or wadis, that eroded during an earlier geologic period and break the surface of the plateau into a series of detached massifs with a few scattered oases.

Two visualization methods were combined to produce the image: shading and color coding of topographic height. The shade image was derived by computing topographic slope in the northwest-southeast direction, so that northwest slopes appear bright and southeast slopes appear dark. Color coding is directly related to topographic height, with green at the lower elevations, rising through yellow and tan, to white at the highest elevations.

Elevation data used in this image were acquired by the Shuttle Radar Topography Mission aboard the Space Shuttle Endeavour, launched on Feb. 11, 2000. SRTM used the same radar instrument that comprised the Spaceborne Imaging Radar-C/X-Band Synthetic Aperture Radar (SIR-C/X-SAR) that flew twice on the Space Shuttle Endeavour in 1994. SRTM was designed to collect 3-D measurements of the Earth's surface. To collect the 3-D data, engineers added a 60-meter (approximately 200-foot

Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads.

PubMed

Lima, Leandro; Sinaimeri, Blerina; Sacomoto, Gustavo; Lopez-Maestre, Helene; Marchet, Camille; Miele, Vincent; Sagot, Marie-France; Lacroix, Vincent

2017-01-01

The main challenge in de novo genome assembly of DNA-seq data is certainly to deal with repeats that are longer than the reads. In de novo transcriptome assembly of RNA-seq reads, on the other hand, this problem has been underestimated so far. Even though we have fewer and shorter repeated sequences in transcriptomics, they do create ambiguities and confuse assemblers if not addressed properly. Most transcriptome assemblers of short reads are based on de Bruijn graphs (DBG) and have no clear and explicit model for repeats in RNA-seq data, relying instead on heuristics to deal with them. The results of this work are threefold. First, we introduce a formal model for representing high copy-number and low-divergence repeats in RNA-seq data and exploit its properties to infer a combinatorial characteristic of repeat-associated subgraphs. We show that the problem of identifying such subgraphs in a DBG is NP-complete. Second, we show that in the specific case of local assembly of alternative splicing (AS) events, we can implicitly avoid such subgraphs, and we present an efficient algorithm to enumerate AS events that are not included in repeats. Using simulated data, we show that this strategy is significantly more sensitive and precise than the previous version of KisSplice (Sacomoto et al. in WABI, pp 99-111, 1), Trinity (Grabherr et al. in Nat Biotechnol 29(7):644-652, 2), and Oases (Schulz et al. in Bioinformatics 28(8):1086-1092, 3), for the specific task of calling AS events. Third, we turn our focus to full-length transcriptome assembly, and we show that exploring the topology of DBGs can improve de novo transcriptome evaluation methods. Based on the observation that repeats create complicated regions in a DBG, and when assemblers try to traverse these regions, they can infer erroneous transcripts, we propose a measure to flag transcripts traversing such troublesome regions, thereby giving a confidence level for each transcript. The originality of our work when

Controls and variability of solute and sedimentary fluxes in Antarctic and sub-Antarctic Environments

NASA Astrophysics Data System (ADS)

Zwolinski, Zbigniew

2015-04-01

The currently prepared SEDIBUD Book on "Source-to-Sink Fluxes in Undisturbed Cold Environments" (edited by Achim A. Beylich, John C. Dixon and Zbigniew Zwolinski and published by Cambridge University Press) is summarizing and synthesizing the achievements of the International Association of Geomorphologists` (I.A.G./A.I.G.) Working Group SEDIBUD (Sediment Budgets in Cold Environments), which has been active since 2005 (http://www.geomorph.org/wg/wgsb.html). The book comprises five parts. One of them is part about sub-Antarctic and Antarctic Environments. This part "Sub-Antarctic and Antarctic Environments" describes two different environments, namely oceanic and continental ones. Each part contains results of research on environmental drivers and rates of contemporary solute and sedimentary fluxes in selected sites. Apart from describing the environmental conditions of the whole continent of Antarctica and sub-Antarctic islands (Zb.Zwolinski, M.Kejna, A.N.Lastochkin, A.Zhirov, S.Boltramovich) this part of the book characterizes terrestrial polar oases free from multi-year ice and snow covers (Zb.Zwolinski). The detailed results of geoecological and sedimentological research come from different parts of Antarctica. Antarctic continental shelf (E.Isla) is an example of sub-Antarctic oceanic environment. South Shetlands, especially King George Island (Zb.Zwolinski, M.Kejna, G.Rachlewicz, I.Sobota, J.Szpikowski), is an example of sub-Antarctic terrestrial environment. Antarctic Peninsula (G.Vieira, M.Francelino, J.C.Fernandes) and surroundings of McMurdo Dry Valleys (W.B.Lyons, K.A.Welch, J.Levy, A.Fountain, D.McKnight) are examples of Antarctic continental environments. The key goals of the Antarctic and sub-Antarctic book chapters are following: (i) identify the main environmental drivers and rates of contemporary solute and sedimentary fluxes, and (ii) model possible effects of projected climate change on solute and sedimentary fluxes in cold climate environments

Molecular identification of differentially regulated genes in the hydrothermal-vent species Bathymodiolus thermophilus and Paralvinella pandorae in response to temperature

PubMed Central

Boutet, Isabelle; Jollivet, Didier; Shillito, Bruce; Moraga, Dario; Tanguy, Arnaud

2009-01-01

Background Hydrothermal vents and cold seeps represent oases of life in the deep-sea environment, but are also characterized by challenging physical and chemical conditions. The effect of temperature fluctuations on vent organisms in their habitat has not been well explored, in particular at a molecular level, most gene expression studies being conducted on coastal marine species. In order to better understand the response of hydrothermal organisms to different temperature regimes, differentially expressed genes (obtained by a subtractive suppression hybridization approach) were identified in the mussel Bathymodiolus thermophilus and the annelid Paralvinella pandorae irlandei to characterize the physiological processes involved when animals are subjected to long term exposure (2 days) at two contrasting temperatures (10° versus 20°C), while maintained at in situ pressures. To avoid a potential effect of pressure, the experimental animals were initially thermally acclimated for 24 hours in a pressurized vessel. Results For each species, we produced two subtractive cDNA libraries (forward and reverse) from sets of deep-sea mussels and annelids exposed together to a thermal challenge under pressure. RNA extracted from the gills, adductor muscle, mantle and foot tissue were used for B. thermophilus. For the annelid model, whole animals (small individuals) were used. For each of the four libraries, we sequenced 200 clones, resulting in 78 and 83 unique sequences in mussels and annelids (about 20% of the sequencing effort), respectively, with only half of them corresponding to known genes. Real-time PCR was used to validate differentially expressed genes identified in the corresponding libraries. Strong expression variations have been observed for some specific genes such as the intracellular hemoglobin, the nidogen protein, and Rab7 in P. pandorae, and the SPARC protein, cyclophilin, foot protein and adhesive plaque protein in B. thermophilus. Conclusion Our results

An Integrated Decision Support System with Hydrological Processes and Socio-economic Assessments

NASA Astrophysics Data System (ADS)

Yu, Yang; Disse, Markus; Yu, Ruide

2017-04-01

The debate over the effectiveness of Integrated Water Resources Management (IWRM) in practice has lasted for years. As the complexity and scope of IWRM increases, the difficulties of hydrological modeling is shifting from the model itself into the links with other cognate sciences, to understand the interactions among water, earth, ecosystem and humans. This work presents the design and development of a decision support system (DSS) that links the outputs of hydrological models with real-time decision making on social-economic assessments and land use changes. Discharge and glacier geometry changes were simulated with hydrological model WASA. Irrigation and ecological water were simulated by a new commercial software MIKE HYDRO. Groundwater was simulated by MODFLOW. All the outputs of theses hydrological models were integrated as inputs into the DSS in three types of links: regression equations, stationary data inputs, or dynamic data inputs into DSS as the models running parallel in the simulation periods. Within DSS, three types of logics were established: equations, conditional statements and fuzzy logics. The programming was realized in C++. The implementation of DSS takes place in the Tarim River Basin. With the mainstream of 1,321km and located in an arid area in northwest China, the Tarim River is China's longest inland river. The Tarim basin on the northern edge of the Taklamakan desert is an extremely arid region. In this region, agricultural water consumption and allocation management are crucial to address the conflicts among irrigation water users from upstream to downstream. Since 2011, the German Ministry of Science and Education BMBF established the Sino-German SuMaRiO project, for the sustainable management of river oases along the Tarim River. Project SuMaRiO focus on realizable management strategies, considering social, economic and ecological criteria. This will have positive effects for nearly 10 million inhabitants of different ethnic groups

Impact and monitoring of dust storms in Taklimakan desert

NASA Astrophysics Data System (ADS)

Feng, G. G.; Li, X.; Zheng, Z.

2012-12-01

The Taklimakan is China's largest, driest, and warmest desert in total area of 338000km^2 with perimeter of 436 km, it is also known as one of the world's largest shifting-sand deserts. Fully 85 percent of the total area consists of mobile, crescent-shaped sand dunes and are virtually devoid of vegetation. The abundant sand provides material for frequent intense dust storms. The Taklimakan desert fills the expansive Tarim Basin between the Kunlun Mountains and the Tibet Plateau to the south and the Tian Shan Mountains to the north. The Tarim River flows across the basin from west-to-east. In these places, the oases created by fresh surface water support agriculture. Studies outside Xinjiang indicated that 80% dust source of storms was from farmland. Dust storms in the Tarim Basin occur for 20 to 59 days, mainly in spring every year. However, little effort was taken to investigate soil wind erosion and dust emission around the desert. Quantitative understanding of individual dust events in the arid Taklimakan desert, for example, the dust emission rates and the long-range transport, are still incomplete. Therefore, the dust events were observed through routine satellite sensors, lidar instruments, airborne samplers, and surface-based aerosol monitors. Soil wind erosion and suspended particulates emission of four major dust storms from the desert and the typical oasis farmlands at the north rim of the desert were measured using creep sampler, BSNE and TSP at eight heights in 2012. In addition, Aqua satellite AOD data, the NAAPS Global Aeosol model, the CALIPSO satellite products, EPA's AirNow AQI of PM2.5 and HYSPLIT Back Trajectory model were applied to analyze dust transport across the Pacific. Four significant dust storms were observed at the north rim of Taklimakan desert in the spring, 2012. During those events, predominant wind direction ranged from 296 to 334°, wind speed over 7 m/s at 2 m lasted for 471-1074 min, gust wind speed ranged from 11-18m/s. It was

The coastal oasis: ice age springs on emerged continental shelves

NASA Astrophysics Data System (ADS)

Faure, Hugues; Walter, Robert C.; Grant, Douglas R.

2002-06-01

lakes whose free-air water levels fell during periods of aridity. Such modern examples are seen in the Caspian Sea and Dead Sea, the Afar Depression, and the Sahara Desert. These modern analogues demonstrate the likelihood that underground water will be more abundant on emerged shelves during sea-level fall, causing springs, oases, and wetlands to appear. Our model creates an apparent paradox: in tropical and subtropical arid lands, such as most of Africa, sea-level fall during hyperarid glacial phases would produce abundant fresh water flow onto emerged continental shelves as the continental interior desiccated. Thus, emergent shoreline springs provided new habitats for terrestrial vegetation and animals displaced from the interior by increasingly arid conditions, shrinking ecosystems, and dwindling water supplies. Such a scenario would have had a profound influence on the vegetation that spreads naturally to colonize the emerged shelves during glacio-eustatic sea-level lowstands, as well as creating new habitats for terrestrial mammals, including early humans.

Desert and desertification in Iran

NASA Astrophysics Data System (ADS)

Bahrami, M.

2009-04-01

One of the greatest environmental concerns in Iran as in other arid and semiarid countries is the transformation of once productive, or marginally productive, land to deteriorated land and soil unable to support plants and animals. Because the land becomes barren and dry, the process is described as desertification, which occurs as a sequence of events. The area of deserts in Iran is about 340,000 Km2 (less than one fifth of its total area), of which 100,000 Km2 is being used for some cultivation, 120,000 Km2 is subjected to moving sands about 40 % of which is active sand dunes. Most of features and processes usual in world famous deserts are also observed in Iran: low precipitation, high evaporation, poor or lack of vegetation, saline and alkaline soils, low population and small and sparse oases. The deserts of Iran are generally classified in the subtropical, warm, arid and semiarid group, but the effect and presence of some geographical and geoclimatical factors such as height, vicinity to Indian Ocean and so on do some changes in climatic conditions and geographical features causing some local and regional differences in them. Geographically, two groups of deserts have been known in Iran: (1) Coastal deserts which, like a ribbon with variable width, stretch from extreme southeast to extreme southwest, at the north parts of Oman Sea and Persian Gulf. One important feature of these deserts is relatively high humidity which differentiates them from other deserts. This causes an increase in vegetation coverage and hence a decrease in eolian erosion and also a dominance of chemical weathering to that of physical. (2) internal deserts, which rest in central, eastern and southeastern plateau of the country and in independent and semi dependent depressions. This situation, which is due to the surrounding high mountains, blocks humidity entry and causes the aridity of these deserts. Wind as a dominant process in the area causes deflated features such as Reg (desert

Remote Sensing and Shallow Geophysical Investigations on Moghra Lake in Northeastern Qattarra Depression, Western Desert, Egypt

NASA Astrophysics Data System (ADS)

Khan, S. D.; Fathy, M. S.; Azeem, M. A.

2012-12-01

The Western Desert of Egypt encompasses two thirds of the land area of Egypt and constitutes one of the driest regions of the Sahara. This desert has seven depressions; Siwa, Qattara, Fayium, Bahariya, Farafra, Dakhla and Kharga. These depressions may be the manifestation of old drainage basins with extensive erosion and possibly some tectonic activity. Several oases with freshwater can be found in these depressions. Geological and geophysical investigations in Qattara Depression indicate several buried fluvial channels with flow direction from highlands in southeast to northwest. Moghra Lake at the northeastern tip of Qatarra basin may be a small remnant of a larger paleo-lake including the mouth of a paleo-river. This study probed this area for presence of buried channels that may have fed the larger Moghra paleo-lake. We have used ALOS - PALSAR radar remote sensing data to identify the surface features in this region, such as channels, channel fills, and fractures. In addition, dual polarization PALSAR data (HV, HH) allowed analysis of the near surface geology and assisted in delineating areas of interest for GPR surveys. GPR data along 2D profiles were acquired using the GSSI SIR-3000 system with a 400 MHz antenna that provided images to approximately three meters in depth. All the GPS data were processed using RADAN 6.6 software. A conventional processing flow was used for data processing: The positional correction tool removed the air wave. A range-gain balanced the amplitudes and a final band-pass (50 kHz to 500 kHz) filter was applied to the data. Deconvolution was also applied for highlighting the finer details. In addition, spatial filters were used to attenuate continuous vertical noise. The migrated sections of GPR identified a major paleochannel distributary with two minor channels at the margins. The bedrock of the studied area consists of the Lower Miocene Moghra Formation (sandstone and shale intercalations). The area around the present lake is

Characterization of magnetic spherical fractions in sand deposits for interpretation of environmental change around the El- Zayyan temple, Kharga Oasis, Western Desert, Egypt

NASA Astrophysics Data System (ADS)

Watanabe, Makiko; Koizumi, Natsuko; Kato, Sayuri; Kikuchi, Ryohei; Kamei, Hiroyuki

2014-05-01

Desertification in North Africa has rapidly advanced over the last 6,000 years. Such environmental changes began in the Early Dynastic Period of Egypt (4200 - 3150 BC), and the occupation of Achaemenid Persian and Roman cultures in Egypt occurred under even drier climates. Kharga is the largest oasis of the five oases, located in the western desert of Egypt that contains a treasure trove of archaeological resources. This oasis has been highlighted to promote resource exploration and development of archaeological tourism since the 1980's. The El-Zayyan temple is located 27 km south of the central Kharga oasis. Zayyan was once called 'Tchonemyris', which has connection with the means of 'huge well' in Greek. Although major portions of the temple were rebuilt in 140 AD during the rule of the Roman Emperor Antoninus Pius, this temple is considered to be originally built in the Ptolemaic period (4c-1c BC). It is likely that the area had a sufficient water supply in the past as the El-Zayyan temple stands at the lowest point (-18 m a.s.l.) in the Kharga oasis. Furthermore, the El-Ghueita temple that stands on a hill top at 68.5 m a.s.l., 4 km northward from the El-Zayyan temple, has given name that means 'beautiful garden' in Greek. From these facts, we can imagine that the past landscape of this area contained green surroundings. The El-Ghueita temple was well known as a production centre of high quality wine since the mid-Dynastic age (2050 -1786 BC). As this area is currently arid, it is expected that there were irrigation facilities to maintain the vast farm land during the ancient period. To deepen our knowledge of how people developed their technologies and conducted their life within the natural environment of a drastic drying period, understanding the process of environmental change on a region scale is necessary. The aim of this study was to extract proxies from sand deposits in the western desert area to estimate the change in the environment. We examined the

Bird migration patterns in the arid southwest-Final report

USGS Publications Warehouse

Ruth, Janet M.; Felix, Rodney K.; Dieh, Robert H.

2010-01-01

habitat types at all sites in at least one season. Upland forest habitat in parts of Arizona and New Mexico supported high migrant densities, especially in fall. Developed habitats in areas with little upland forest habitat also supported high migrant densities. Scrub/shrub and grassland habitats supported low to intermediate migrant densities, but because these habitat types dominate the region, they may support large numbers of migratory birds. This may be especially true for species that do not use forested habitats during migration. Target identity remains a challenge for radar-based studies. Presence of bats in the data complicates interpretation of some observations, particularly from central Texas. Based on our results it is simplistic to: (1) consider the arid west as a largely inhospitable landscape in which there are only relatively small oases of habitat that provide the resources needed by all migrants; (2) think of western riparian and upland forest habitat as supporting the majority of migrants in all cases; or (3) consider a particular habitat type unimportant migrant stopover habitat based solely on migrant densities.

High-resolution Terrestrial Laser Scanning (TLS) on cushion peatlands - a case study from the Peruvian Andes

NASA Astrophysics Data System (ADS)

Forbriger, M.; Höfle, B.; Siart, C.; Schittek, K.; Bubenzer, O.

2012-04-01

So-called cushion peatlands located in the high mountain areas of the Peruvian Andes are unique ecotopes, which are of major importance for both palaeoenvironmental reconstructions and permanent water supply of the valley oases in the presently hyperarid Peruvian desert. In this context, a case study was performed on the Cerro Llamoca peatland (southern Peru, province Lucanas, 14° S) in the uppermost reaches of the Rió Grande catchment area (4000-4450 m a.s.l.) within the framework of the BMBF-funded project 'Andean Transect - Climate Sensitivity of pre-Columbian Man-Environment-Systems' and serves as a basis for a long-term, multitemporal observation study. As small-scale geomorphologic investigations require high-resolution elevation data, which is still not available for this remote study site, and local microrelief is characterised by features not visible from aerial view (e.g. channel cuttings within the peatland), terrestrial laser scanning (TLS) was applied. Data acquisition was carried out with one of the latest 'time-of-flight'-scanners (Riegl VZ-400). A total of 46 positions was recorded to capture the whole area of interest leading to more 370 million single laser points within an area of approximately 1,8 km2. Registration of scan positions was performed by means of GPS measurements, coarse registration and the iterative closest point (ICP) algorithm provided by the plugin Multi-Station Adjustment within the RiSCAN PRO software (Riegl). The large amount of output data required the use of special LiDAR software for further processing and digital elevation raster generation (OPALS software). The defined target raster resolution was set to values between 0.1 and 2 m depending on the average point density. It is important to have access to the original point cloud including additional laser point attributes (e.g. signal amplitude and echo width) for digital terrain model generation (i.e. terrain point filtering) and geomorphologic mapping by means of

Surface vitrification caused by natural fires in Late Pleistocene wetlands of the Atacama Desert

NASA Astrophysics Data System (ADS)

Roperch, Pierrick; Gattacceca, Jerome; Valenzuela, Millarca; Devouard, Bertrand; Lorand, Jean-Pierre; Arriagada, Cesar; Rochette, Pierre; Latorre, Claudio

2017-04-01

Melted rocks are a common feature in many of the 175 recognized terrestrial impact structures [1]. However, some glasses, like the Dakhleh Glass [2] or the Edeowie Glass [3] are also attributed to impacts despite the lack of other direct evidence. These cases have been attributed to low-altitude airbursts of cosmic bodies (asteroids, comets) during their entry in the Earth's atmosphere but the identification and mechanism of formation of these glasses are however debated. Massive glass blocks were recently discovered [4] in the Tamarugal-Llamara basin of the Atacama desert in Chile. We show that these glasses, found near the town of Pica at four localities separated by up to 70 km, are neither fulgurites, nor volcanic glasses, nor metallurgical slags related to anthropic activity, but show close similarities with other glasses, which have been attributed to large airbursts. However, most glasses contain numerous plant imprints and some glasses are mainly made of partially melted silicified plant twigs and field observations indicate that the glasses are restricted to specific Late Pleistocene wetlands. Large oases did indeed form in the hyperarid Atacama desert due to elevated groundwater discharge and increased recharge during the Central Andean Pluvial Event (roughly coeval with the Mystery interval and Younger Dryas). 14C dating and paleomagnetic data indicate that the glasses were formed during at least two distinct periods. The strong environmental control on the distribution of the glasses and large differences in ages rule out the hypothesis of a single large airburst as the cause of surface melting. The available data suggest that the Atacama desert surface glasses were formed in situ by natural fires in soils rich in dry organic matter and siliceous biological remains, at a time of strong climate oscillations between wet (organic matter accumulation in soils) and dry periods (triggering fires) in desert wetlands. Our interpretation likely applies to other

GLOBE at Night: a Worldwide Citizen-Science Program to Increase Awareness of Light Pollution by Measuring Night Sky Brightness

NASA Astrophysics Data System (ADS)

Walker, C. E.; Pompea, S. M.

2011-12-01

canvassed the town, allowing for comparisons of light levels over time (hours, days, years) or searching for dark sky oases or light polluted areas. The increase to 2 campaigns in 2011 re-enforces these studies. The intent is to offer the program year-round for seasonal studies. The data can also be used to compare with datasets on wildlife, health, and energy consumption. Recently, NOAO and the Arizona Game and Fish Department have started a project with GLOBE at Night data and bat telemetry to examine a dark skies corridor in Tucson where the endangered bats fly. In addition, a 2nd new Web application (www.globeatnight.org/mapapp/) allows for mapping GLOBE at Night data points within a specified distance around a city or an area of choice. The resulting maps are bookmarkable and shareable. The presentation will highlight the education and outreach value of the program's resources and outcomes, lessons learned, successes and pitfalls in communicating awareness with the public and attracting young people to study science.

Hydrological Cycle in the Heihe River Basin and Its Implication for Water Resource Management in Inland River Basins (Invited)

NASA Astrophysics Data System (ADS)

Li, X.; Cheng, G.; Tian, W.; Zhang, Y.; Zhou, J.; Pan, X.; Ge, Y.; Hu, X.

2013-12-01

Inland river basins take about 11.4% of the land area of the world and most of them are distributed over arid regions. Understanding the hydrological cycle of inland river basin is important for water resource management in water scarcity regions. This paper illustrated hydrological cycle of a typical inland river basin in China, the Heihe River Basin (HRB). First, water balance in upper, middle and lower reaches of the HRB was conceptualized by analyzing dominant hydrological processes in different parts of the river basin. Then, we used a modeling approach to study the water cycle in the HRB. In the upper reaches, we used the GBHM-SHAW, a distributed hydrological model with a new frozen soil parameterization. In the middle and lower reaches, we used the GWSiB, a three-dimensionally coupled land surface-groundwater model. Modeling results were compared with water balance observations in different landscapes and cross-validated with other results to ensure the reliability. The results show that the hydrological cycle in HRB has some distinctive characteristics. Mountainous area generates almost all of the runoff for the whole river basin. High-elevation zones have much larger runoff/precipitation ratio. Cryospheric hydrology plays an important role. Although snow melting and glacier runoff take less than 25% of total runoff, these processes regulate inter-annual variation of runoff and thus provide stable water resource for oases downstream. Forest area contributes almost no runoff but it smoothes runoff and reduces floods by storing water in soil and releasing it out slowly. In the middle reaches, artificial hydrological cycle is much more dominated than natural one. River water and groundwater, recharged by runoff from mountainous area, is the water resource to support the agriculture and nurture the riparian ecosystem. Precipitation, approximately 150 mm in average, is only a supplement to agriculture use but sufficient to sustain desert vegetation. Water

Archaeological prospection of cultural heritage in the Nasca region, Peru, by coupling ENVISAT ASAR 2003-2007 and optical-VHR time series

NASA Astrophysics Data System (ADS)

Tapete, Deodato; Cigna, Francesca; Masini, Nicola; Lasaponara, Rosa

2013-04-01

We present the radar-interpretation of a 4year-long stack of ENVISAT ASAR imagery, integrated and cross-validated with optical-Very High Resolution (VHR) data from QuickBird2, GeoEye and WorldView-1/2, and carried out over the cultural and natural heritage of the Nasca region in Southern Peru. This research is performed thanks to the provision of free-access archive SAR data from the European Space Agency (ESA) through the Cat-1 project 11073, and is supporting the activities of the Italian mission of heritage Conservation and Archaeogeophysics (ITACA), which directly involve researchers from the Institute for Archaeological and Monumental Heritage (IBAM) and the Institute of Methodologies for Environmental Analysis (IMAA), National Research Council (CNR) of Italy. The whole ENVISAT ASAR imagery archive, consisting of 8 ASAR IS2 scenes acquired in descending mode between 04/02/2003 and 15/11/2005 and 5 images in ascending mode between 24/07/2005 and 11/11/2007, was processed by exploiting and analyzing SAR amplitude information and change detection to reconstruct the temporal evolution of radar signatures and related backscattering coefficient (σ0) of the targets on the ground in the monitoring period 2003-2007. The selection of a SAR amplitude-based change detection method was made to explore its actual potentials for archaeological prospection and monitoring purposes, complementarily to approaches of interferometric coherence used by other scholars over the same region of investigation. The novel contribution to heritage studies over Nasca includes remote sensing insights into the renowned UNESCO-WHL Nasca geoglyphs and archaeological mounds of the adobe Ceremonial Centre of Cahuachi, as well as the ancient puquios within the Rio Grande drainage basin. The latter are prehispanic underground aqueducts, and nowadays represent not only important cultural features to preserve, but also a potential driver to revitalize waterways and oases in such a dry region

Space Radar Image of Safsaf, North Africa

NASA Technical Reports Server (NTRS)

1999-01-01

This is a false-color image of the uninhabited Safsaf Oasis in southern Egypt near the Egypt/Sudan border. It was produced from data obtained from the L-band and C-band radars that are part of the Spaceborne Imaging Radar C/X-Band Synthetic Aperture Radar (SIR-C/X-SAR) onboard space shuttle Endeavour on April 9, 1994. The image is centered at 22 degree north latitude, 29 degrees east longitude. It shows detailed structures of bedrock; the dark blue sinuous lines are braided channels that occupy part of an old broad river valley. On the ground and in optical photographs, this big valley and the channels in it are invisible because they are entirely covered by windblown sand. Some of these same channels were observed in SIR-A images in 1981. It is hypothesized that the large valley was carved by one of several ancient predecessor rivers that crossed this part of North Africa, flowing westward, tens of millions of years before the Nile River existed. The Nile flows north about 300 kilometers (200 miles) to the east. The small channels are younger, and probably formed during relatively wet climatic periods within the past few hundred thousand years. This image shows that the channels are in a river valley located in an area where U.S. Geological Survey geologists and archeologists discovered an unusual concentration of hand axes (stone tools) used by Early Man (Homo erectus) hundreds of thousands of years ago. The image clearly shows that in wetter times, the valley would have supported game animals and vegetation. Today, as a result of climate change, the area in uninhabited and lacks water except fora few scattered oases. This color composite image was produced from C-band and L-band horizontal polarization images. The C-band image was assigned red, the L-band (HH) polarization image is shown in green, and the ratio of these two images (LHH/CHH) appears in blue. The primary and composite colors on the image indicate the degree to which the C-band, H-band, their

The origin of the Dargom canal in the oasis of Samarkand (Uzbekistan). A new scenario from geoarcheological data

NASA Astrophysics Data System (ADS)

Marconi, V.; Mantellini, S.; Picotti, V.; Gabbianelli, G.; Tosi, M.

2009-04-01

As the main oases developed in the arid regions of Central Asia, the region of Samarkand is the outcome of large hydraulic works carried out since the past times. The main result of such a great landscape transformation is a complex irrigation network formed by several artificial channels and useful for both urban water supply and irrigation purposes. Within the framework of the Italo-Uzbek Archaeological Project begun in 2001, a specific study was aimed to reconstruct the history of Dargom, the primary canal on the South of the city, and its relationships with the settlement dynamics. According to the most accepted theories, the Dargom was dug during the Achaemenid Age (6th-4th c. BC) as a consequence of a master plan linked to a strong central political power. The new investigations carried out by a joined team of Archaelogists and Geologists from the University Bologna allowed a new hypothesis on the way of digging and the chronology of the Dargom itself. The analyses on the historical settlement patterns seem to suggest a low development of Samarkand's territory during the Achaemenid times, whilst the increasing of sites during the Early Middle Age (5th-8th c.) can be explained throughout the rich trades along the Silk Road as well as the development of irrigated agriculture. The present-day Dargom is a high sinuosity channel deeply incised into the bedrock flowing to the east, strongly resembling a natural channel. It has been excavated for around 70 km along an apron of alluvial fans sourced by a southern mountain range. Its morphology clearly document a natural evolution after excavation: incision and meandering took place, likely due to the increasing gradient related to the headward migration of lowering of the base-level and the decrease of the bed load through time. Field survey around the fortress of Kafir Kala, the main archeological site geographically linked to the Dargom, allowed reconstructing the original bed of the canal, marked by a layer of

The martian surface.

PubMed

Opik, E J

1966-07-15

could depend on the low night-time temperature and deposition of hoarfrost, which could melt into droplets after sunrise, before evaporating. If not vegetation, it must be something thing specifically Martian; no other hypothesis hitherto proposed is able to account for the facts. However, the infrared bands which at one time were thought to be associated with the presence of organic matter, belong to heavy water in the terrestrial atmosphere. The conversion of a former bright area into a dark one in 1954, over some 1 million square kilometers, is the largest recorded change of this kind. Even on the vegetation hypothesis, it eludes satisfactory explanation. Relatively bright areas observed in the blue and violet in polar regions and elsewhere on the limb can be explained by a greater transparency of the atmosphere,its dust content being decreased by a downward (anticyclonic) current. The surface, of a greater reflecting power than the atmospheric smoke, then becomes visible. The sudden explosion-like occurrence of yellow or gray clouds, reducing atmospheric transparency and surface contrast, could be due to impacts of asteroids; in such a case, however, the number of unobservable small asteroids, down to 30 to 40 meters in diameter, should greatly exceed the number extrapolated from the larger members of the group. A "meteoritic" increment in numbers, instead of the asteroidal one, would be required. special observations with large Schmidt telescopes could settle this crucial question. The Martian "oases," centers of "canal" systems, could be impact creters. The canals may be real formations, without sharp borders and 100 to 200 kilometers wide, due to a systematic alignment. of the dark surface elements. They may indicate cracks in the planet's crust, radiating from the point of impact.

Deep Basalt Aquifers in Orcus Patera, Elysium Basin Mars: Perspectives for Exobiology Exploration

NASA Technical Reports Server (NTRS)

Grin, E. A.; Cabrol, N. A.

1998-01-01

simultaneously. Comparatively to terrestrial melts, Martian iron-rich melts are denser. This greater density implies greater effusion rates (eight-times terrestrial values), and larger fissuration widths (two-times terrestrial ones). With increasing vesiculation of magma, the bubbles interact with one-another because there are of similar pressure. They make a magma froth at the contact with the caldera surface, and on the walls of the fractures. In the saturated magma, froth, where the volume ratio of gases-to-liquid is about 4:1, the bubbles form a huge surface area of interconnected spaces. Bubbles near the caldera surface disrupt the magma, and fragmentation takes place, which moves downward through the magma column. On Earth, the bubbles are likely to grow between 1 and 50 mm in diameter due to the difference between the magma surface tension, and the bubble supersaturation pressure. The Martian low-pressure at surface level is likely to accelerate the expansion of the bubbles, and increase their final diameter and number, creating more voids in the magma. The strong magma froth with enclosed juvenile water bubbles interconnected with exsolved gas bubbles constitute a potential geothermal environment for geochemical energy production from basalt and water that does not require excessive temperatures. This process can start at +20C. Similar types of environments have been shown on Earth as potential energy sources for microbial metabolism, and could have provided deep aqueous basaltic niches for possible Martian microorganisms, even geologically recently. During the Amazonian, combination of volcanism and water activity still existed on Mars. Moreover, this type of potential niches open ways for investigation of possible oases of extinct or extant life, not only on paleolakes, and surface hydrothermalism spring areas, but also all large systems of fossae, which combine hydrologic and volcanic activities, and which provide an energy source, and an underground shelter to