Spatio-temporal variation of methane over Indian region: Seasonal and inter-annual variation .

NASA Astrophysics Data System (ADS)

M, K.; Nair, P. R.

2015-12-01

Methane (CH4) has an important role in the radiation budget and chemistry in the lower and middle atmosphere as a greenhouse and reactive trace gas. The rapid developments in the agriculture and industry over India have lead to the emission of many pollutants like CO, O3, CH4, CO2, SO2 etc into the atmosphere. However, their sources, sinks and concentration levels are poorly understood because of the lack of systematic sampling and monitoring. The advent of satellite remote sensing has helped to analyze the chemical composition of atmosphere with good spatial coverage especially over tropical region which was poorly sampled with the existing surface network. This work attempts an analysis of spatial distribution, seasonal cycle and inter annual variation of CH4 over Indian region during 2003-2009 using SCIAMACHY data onboard ENVISAT. Column CH4 varies from 1740-1890 ppbv over Indian region with distinct spatial and temporal features. We observed a dependence of seasonal CH4 variation on rice cultivation, convective activities and changes in boundary layer characteristics. The comparative study using satellite, aircraft and surface measurement shown CH4 has non-homogeneity in its distribution and seasonal variation in different layers of atmosphere. A comparative study of CH4 at different hot spot regions over the globe was carried out which showed prominent hemispherical variations. Large spread in column CH4 was observed at India and Chinese region compared to other regions with a significant seasonal variability. This study points to the blending of satellite, aircraft and surface measurements for the realization of regional distribution of CH4.

Results from OSO-IV - The long term behavior of X-ray emitting regions.

NASA Technical Reports Server (NTRS)

Krieger, A.; Paolini, F.; Vaiana, G. S.; Webb, D.

1972-01-01

Analysis of images of the sun obtained with the aid of a grazing incidence X-ray telescope on board the OSO IV spacecraft in the 2.5 to 12-A waveband nearly continuously from Oct. 27, 1967, to May 12, 1968. The instrument had sufficient spatial resolution (one and four arc minutes) and temporal resolution (5 to 20 min) to estimate the spatial characteristics of X-ray emitting regions and to monitor the temporal behavior of individual active regions. Variations in the absence of flares of as much as a factor of 10 in the X-ray output of individual regions were observed, with typical durations ranging from several hours to several days. The X-ray time variations are related to observations at optical and radio wavelengths. The results are interpreted under the assumption that the X-ray time variations are caused by temperature changes in the coronal portions of active regions. The contribution of radiative losses to the energy budget of the coronal active region is estimated.

Meteorological control of lower stratospheric minor species variations - An observational example

NASA Technical Reports Server (NTRS)

Alyea, F. N.; Cunnold, D. M.

1978-01-01

Lower stratospheric air trajectories entering the region over Alaska at the approximately 125 mb level during late May, 1975 indicate a substantial shift in the geographical source regions for the air masses present during that time. This shift coincides with an approximately 25% decrease in the observed halocarbon mixing ratios at the 125 mb level as determined from a daily sequence of halocarbon profiles. Since the halocarbon species measured are essentially chemically inactive at this level, the observed variation is linked to the changing meteorological pattern.

Diurnal variation of tropospheric relative humidity in tropical regions

NASA Astrophysics Data System (ADS)

Moradi, Isaac; Arkin, Philip; Ferraro, Ralph; Eriksson, Patrick; Fetzer, Eric

2016-06-01

Despite the importance of water vapor especially in the tropical region, the diurnal variations of water vapor have not been completely investigated in the past due to the lack of adequate observations. Measurements from Sondeur Atmosphérique du Profil d'Humidité Intertropicale par Radiométrie (SAPHIR) onboard the low inclination Megha-Tropiques satellite with frequent daily revisits provide a valuable dataset for investigating the diurnal and spatial variation of tropospheric relative humidity in the tropical region. In this study, we first transformed SAPHIR observations into layer-averaged relative humidity, then partitioned the data based on local observation time into 24 bins with a grid resolution of one degree. Afterwards, we fitted Fourier series to the binned data. Finally, the mean, amplitude, and diurnal peak time of relative humidity in tropical regions were calculated for each grid point using either the measurements or Fourier series. The results were separately investigated for different SAPHIR channels as well as for relative humidity with respect to both liquid and ice phases. The results showed that the wet and dry regions are, respectively, associated with convective and subsidence regions which is consistent with the previous studies. The mean tropospheric humidity values reported in this study are generally 10 to 15 % higher than those reported using infrared observations which is because of strict cloud screening for infrared measurements. The results showed a large inhomogeneity in diurnal variation of tropospheric relative humidity in tropical region. The diurnal amplitude was larger over land than over ocean and the oceanic amplitude was larger over convective regions than over subsidence regions. The results showed that the diurnal amplitude is less than 10 % in middle and upper troposphere, but it is up to 30 % in lower troposphere over land. Although the peak of RH generally occurs over night or in early morning, there are several regions where the diurnal peak occurs at other times of the day. The early morning peak time is because of a peak in convective activities in early morning. Additionally, a double peak was observed in tropospheric humidity over some regions which is consistent with double peak in precipitation.

Latitudinal variation of the solar limb-darkening function

NASA Astrophysics Data System (ADS)

Kroll, Ronald J.

1994-06-01

In an effort to monitor solar limb-darkening variability, the continuum radiation intensity at 550 nm over the outermost 32 arcseconds of the limb is measured at various solar latitudes. Using the Finite Fourier Transform Definition, the edge location of the Sun is determined for a series of scan amplitudes at each of the observed positions. The differential radius is the difference between edge locations for a fixed pair of scan amplitudes, and is a quantity which characterizes the slope of the solar limb-darkening function. Utilizing the differential radius, such observations offer the possibility of revealing a latitudinal variation of the photospheric temperature gradient and could provide clues to the mechanisms and variability of energy transport out of the Sun. These observations began in 1988 with measurements at 24 separate limb positions and include observations since 1990 when 36 positions were observed. The daily differential radius measurements for each position that is free of contamination from solar active regions are weighted according to the corresponding daily variance and averaged to obtain an overall value at each position for the observing season. The results indicate that during the 1991 observing season, there were regions near 20 deg N latitude and 30 deg S latitude on the Sun where the differential radius values were significantly greater than surrounding regions. This suggests that perturbations to the temperature gradient occur in latitudinally localized regions and persist for at least several months. It is shown that this phenomenon could have the same origin as the observed latitudinal variations of surface temperature and could also speak to the question of a lag time between the cycles of irradiation and magnetic variation.

Observation of subsecond variations in auroral region total electron content using 100 Hz sampling of GPS observables

NASA Astrophysics Data System (ADS)

McCaffrey, A. M.; Jayachandran, P. T.

2017-06-01

First ever auroral region total electron content (TEC) measurements at 100 Hz using a Septentrio PolaRxS Pro receiver are analyzed to discover ionospheric signatures which would otherwise be unobtainable with the frequently used lower sampling rates. Two types of variations are observed: small-magnitude (amplitude) variations, which are present consistently throughout the data set, and larger-magnitude (amplitude) variations, which are less frequent. Small-amplitude TEC fluctuations are accounted for by the receiver phase jitter. However, estimated secondary ionospheric effects in the calculation of TEC and the receiver phase jitter were unable to account for the larger-amplitude TEC fluctuations. These variations are also accompanied by fluctuations in the magnetic field, which seems to indicate that these fluctuations are real and of geophysical significance. This paper presents a technique and the capability of high-rate TEC measurements in the study of auroral dynamics. Further detailed study is needed to identify the cause of these subsecond TEC fluctuations and associated magnetic field fluctuations.

Different Regions, Diverse Classrooms? a Study of Primary Classrooms in China

ERIC Educational Resources Information Center

McNaught, Carmel; Lok, Beatrice; Yin, Hongbiao; Lee, John Chi-Kin; Song, Huan

2014-01-01

Classroom experience is shaped by a number of factors. In this paper, we report a classroom observation study in China, illustrating regional variation in students' classroom learning experiences. Through comparing and contrasting observed classroom practices in three different regions in China (Chongqing, Hong Kong and Shanghai), the paper…

Coordinated ultraviolet and radio observations of selected nearby stars

NASA Technical Reports Server (NTRS)

Lang, Kenneth R.

1987-01-01

All of the US2 shifts assigned were successfully completed with simultaneous International Ultraviolet Explorer (IUE) and the Very Large Array (VLA) observations of the proposed target stars. The target stars included dwarf M flare stars and RS CVn stars. The combined ultraviolet (IUE) and microwave (VLA) observations have provided important new insights to the radiation mechanisms at these two widely-separated regions of the electromagnetic spectrum. The VLA results included the discovery of narrow-band microwave radiation and rapid time variations in the microwave radiation of dwarf M flare stars. The results indicate that conventional radiation mechanisms cannot explain the microwave emission from these stars. In general, ultraviolet variations and bursts occur when no similar variations are detected at microwave wavelengths and vice versa. Although these is some overlap, the variations in these two spectral regions are usually uncorrelated, suggesting that there is little interaction between the activity centers at the two associated atmospheric levels.

Geographical Variations and Trends in Major Cancer Incidences throughout Korea during 1999-2013.

PubMed

Won, Young-Joo; Jung, Kyu-Won; Oh, Chang-Mo; Park, Eun-Hye; Kong, Hyun-Joo; Lee, Duk Hyoung; Lee, Kang Hyun

2018-01-04

We aimed to describe the temporal trends and district-level geographical variations in cancer incidences throughout Korea during 1999-2013. Data were obtained from the Korean National Cancer Incidence Database. We calculated the age-standardized cumulative cancer incidences according to sex and geographical region (metropolitan cities, provinces, and districts) for three 5-year periods (1999-2003, 2004-2008, and 2009-2013). Each quintile interval contained the same number of regions. Disease maps were created to visualize regional differences in the cancer incidences. Substantial differences in cancer incidences were observed according to district and cancer type. The largest variations between geographical regions were found for thyroid cancer among both men and women. There was little variation in the incidences of stomach, colorectal, and lung cancer according to geographical region. Substantially elevated incidences of specific cancers were observed in Jeollanam-do (thyroid); Daejeon (colorectum); Jeollanam-do, Gyeongsangbuk-do, and Chungcheongbuk-do (lung); Seocho-gu, Gangnam-gu, and Seongnam, Bundang-gu (breast and prostate); Chungcheong and Gyeongsang provinces (stomach); Ulleung-gun and the southern districts of Gyeongsangnam-do and Jeollanam-do (liver); and along the Nakdonggang River (gallbladder and biliary tract). Mapping regional cancer incidences in Korea allowed us to compare the results according to geographical region. Our results may facilitate the development of infrastructure for systematic cancer incidence monitoring, which could promote the planning and implementation of region-specific cancer management programs.

On the altitude-variation of electron acceleration by HF radio-waves in the F-region

NASA Astrophysics Data System (ADS)

Gustavsson, Bjorn

2016-07-01

I will talk about artificial aurora, the descending layers we have observed at HAARP and the altitude-variations we have observed in enhanced ion and plasma-lines with the EISCAT UHF-radar, and present an empirical model describing these phenomena.

The methane distribution on Titan: high resolution spectroscopy in the near-IR with Keck NIRSPEC/AO

NASA Astrophysics Data System (ADS)

Adamkovics, Mate; Mitchell, Jonathan L.

2014-11-01

The distribution of methane on Titan is a diagnostic of regional scale meteorology and large scale atmospheric circulation. The observed formation of clouds and the transport of heat through the atmosphere both depend on spatial and temporal variations in methane humidity. We have performed observations to measure the the distribution on methane Titan using high spectral resolution near-IR (H-band) observations made with NIRSPEC, with adaptive optics, at Keck Observatory in July 2014. This work builds on previous attempts at this measurement with improvement in the observing protocol and data reduction, together with increased integration times. Radiative transfer models using line-by-line calculation of methane opacities from the HITRAN2012 database are used to retrieve methane abundances. We will describe analysis of the reduced observations, which show latitudinal spatial variation in the region the spectrum that is thought to be sensitive to methane abundance. Quantifying the methane abundance variation requires models that include the spatial variation in surface albedo and meridional haze gradient; we will describe (currently preliminary) analysis of the the methane distribution and uncertainties in the retrieval.

Spectrum and variation of gamma-ray emission from the galactic center region

NASA Technical Reports Server (NTRS)

Riegler, G. R.; Ling, J. C.; Mahoney, W. A.; Wheaton, W. A.; Jacobson, A. S.

1982-01-01

Continuum emission at 60-300 keV from the galactic center region was observed to decrease in intensity by 45 percent and to show a spectrum steepening between fall 1979 and spring 1980. At the same time 511 keV positron annihilation radiation decreased by a comparable fraction. No variations over shorter time scales were detected. The observations are consistent with a model where positrons and hard X-rays are produced in an electromagnetic cascade near a massive black hole.

Improved Multiplex Ligation-dependent Probe Amplification (i-MLPA) for rapid copy number variant (CNV) detection.

PubMed

Saxena, Sonal; Gowdhaman, Kavitha; Kkani, Poornima; Vennapusa, Bhavyasri; Rama Subramanian, Chellamuthu; Ganesh Kumar, S; Mohan, Kommu Naga

2015-10-23

In Multiplex Ligation-dependent Probe Amplification (MLPA), copy number variants (CNVs) for specific genes are identified after normalization of the amounts of PCR products from ligated reference probes hybridized to genomic regions that are ideally free from normal variation. However, we observed ambiguous calls for two reference probes in an investigation of the human 15q11.2 region by MLPA among 20 controls, due to the presence of single nucleotide polymorphisms (SNPs) in the probe-binding regions. Further in silico analysis revealed that 18 out of 19 reference probes hybridize to regions subject to variation, underlining the requirement for designing new reference probes against variation-free regions. An improved MLPA (i-MLPA) method was developed by generating a new set of reference probes to reduce the chances of ambiguous calls and new reagents that reduce hybridization times to 30 min from 16h to obtain MLPA ratio data within 6h. Using i-MLPA, we screened 240 schizophrenia patients for CNVs in 15q11.2 region. Three deletions and two duplications were identified among the 240 schizophrenia patients. No variation was observed for the new reference probes. Taken together, i-MLPA procedure helps obtaining non-ambiguous CNV calls within 6h without compromising accuracy. Copyright © 2015 Elsevier B.V. All rights reserved.

Variation of saturation effect in the ionospheric F2 critical frequency at low latitude

NASA Astrophysics Data System (ADS)

Ikubanni, S. O.; Adeniyi, J. O.

2013-08-01

Saturation in the dependence of foF2 on solar flux is a phenomenon more pronounced in the equatorial ionization anomaly region. The phenomenon was observed in the relationship between the F2 critical frequency (foF2) and any solar indices. Using a two-segmented regression fit on data from an African low latitude station (Geographical Latitude 12.4°N; Geomagnetic latitude 3.5°N), saturation features from the dependence of foF2 on solar radio flux (F10.7) was studied. Diurnal and seasonal variation were studied for the first time in this low latitude region of the African sector. Significant variations were observed, especially in the solstices. It was observed that saturation effect is closely related to the hourly F2 critical frequency and these results were compared with those from Asian, Australian and the American sectors. The diurnal and seasonal variations find their explanations in the photo-ionization process, the fountain effect, and the pre-reversal enhancement while the seasonal variation was attributed to both the ion drift and thermospheric circulation. Future work with larger volume of data is expected to validate the observations from this study.

Hints of correlation between broad-line and radio variations for 3C 120

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, H. T.; Bai, J. M.; Li, S. K.

2014-01-01

In this paper, we investigate the correlation between broad-line and radio variations for the broad-line radio galaxy 3C 120. By the z-transformed discrete correlation function method and the model-independent flux randomization/random subset selection (FR/RSS) Monte Carlo method, we find that broad Hβ line variations lead the 15 GHz variations. The FR/RSS method shows that the Hβ line variations lead the radio variations by a factor of τ{sub ob} = 0.34 ± 0.01 yr. This time lag can be used to locate the position of the emitting region of radio outbursts in the jet, on the order of ∼5 lt-yr frommore » the central engine. This distance is much larger than the size of the broad-line region. The large separation of the radio outburst emitting region from the broad-line region will observably influence the gamma-ray emission in 3C 120.« less

Evaluation of UTLS Carbon Monoxide Simulations in GMI and GEOS-Chem Chemical Transport Models using Aura MLS Observations

NASA Technical Reports Server (NTRS)

Huang, Lei; Jiang, Jonathan H.; Murray, Lee T.; Damon, Megan R.; Su, Hui; Livesey, Nathaniel J.

2016-01-01

This study evaluates the distribution and variation of carbon monoxide (CO) in the upper troposphere and lower stratosphere (UTLS) during 2004-2012 as simulated by two chemical transport models, using the latest version of Aura Microwave Limb Sounder (MLS) observations. The simulated spatial distributions, temporal variations and vertical transport of CO in the UTLS region are compared with those observed by MLS. We also investigate the impact of surface emissions and deep convection on CO concentrations in the UTLS over different regions, using both model simulations and MLS observations. Global Modeling Initiative (GMI) and GEOS-Chem simulations of UTLS CO both show similar spatial distributions to observations. The global mean CO values simulated by both models agree with MLS observations at 215 and 147 hPa, but are significantly underestimated by more than 40% at 100 hPa. In addition, the models underestimate the peak CO values by up to 70% at 100 hPa, 60% at 147 hPa and 40% at 215 hPa, with GEOS-Chem generally simulating more CO at 100 hPa and less CO at 215 hPa than GMI. The seasonal distributions of CO simulated by both models are in better agreement with MLS in the Southern Hemisphere (SH) than in the Northern Hemisphere (NH), with disagreements between model and observations over enhanced CO regions such as southern Africa. The simulated vertical transport of CO shows better agreement with MLS in the tropics and the SH subtropics than the NH subtropics. We also examine regional variations in the relationships among surface CO emission, convection and UTLS CO concentrations. The two models exhibit emission-convection- CO relationships similar to those observed by MLS over the tropics and some regions with enhanced UTLS CO.

Historical trace metal accumulation in the sediments of an urbanized region of the Lake Champlain watershed, Burlington, Vermont

USGS Publications Warehouse

Mecray, E.L.; King, J.W.; Appleby, P.G.; Hunt, A.S.

2001-01-01

This study documents the history of pollution inputs in the Burlington region of Lake Champlain, Vermont using measurements of anthropogenic metals (Cu, Zn, Cr, Pb, Cd, and Ag) in four age-dated sediment cores. Sediments record a history of contamination in a region and can be used to assess the changing threat to biota over time and to evaluate the effectiveness of discharge regulations on anthropogenic inputs. Grain size, magnetic susceptibility, radiometric dating and pollen stratigraphy were combined with trace metal data to provide an assessment of the history of contamination over the last 350 yr in the Burlington region of Lake Champlain. Magnetic susceptibility was initially used to identify land-use history for each site because it is a proxy indicator of soil erosion. Historical trends in metal inputs in the Burlington region from the seventeenth through the twentieth centuries are reflected in downcore variations in metal concentrations and accumulation rates. Metal concentrations increase above background values in the early to mid nineteenth century. The metal input rate to the sediments increases around 1920 and maximum concentrations and accumulation rates are observed in the late 1960s. Decreases in concentration and accumulation rate between 1970 and the present are observed, for most metals. The observed trends are primarily a function of variations in anthropogenic inputs and not variations in sediment grain size. Grain size data were used to remove texture variations from the metal profiles and results show trends in the anthropogenic metal signals remain. Radiometric dating and pollen stratigraphy provide well-constrained dates for the sediments thereby allowing the metal profiles to be interpreted in terms of land-use history.This study documents the history of pollution inputs in the Burlington region of Lake Champlain, Vermont using measurements of anthropogenic metals (Cu, Zn, Cr, Pb, Cd, and Ag) in four age-dated sediment cores. Sediments record a history of contamination in a region and can be used to assess the changing threat to biota over time and to evaluate the effectiveness of discharge regulations on anthropogenic inputs. Grain size, magnetic susceptibility, radiometric dating and pollen stratigraphy were combined with trace metal data to provide an assessment of the history of contamination over the last 350 yr in the Burlington region of Lake Champlain. Magnetic susceptibility was initially used to identify land-use history for each site because it is a proxy indicator of soil erosion. Historical trends in metal inputs in the Burlington region from the seventeenth through the twentieth centuries are reflected in downcore variations in metal concentrations and accumulation rates. Metal concentrations increase above background values in the early to mid nineteenth century. The metal input rate to the sediments increases around 1920 and maximum concentrations and accumulation rates are observed in the late 1960s. Decreases in concentration and accumulation rate between 1970 and the present are observed for most metals. The observed trends are primarily a function of variations in anthropogenic inputs and not variations in sediment grain size. Grain size data were used to remove texture variations from the metal profiles and results show trends in the anthropogenic metal signals remain. Radiometric dating and pollen stratigraphy provide well-constrained dates for the sediments thereby allowing the metal profiles to be interpreted in terms of land-use history.

Identifying water mass depletion in Northern Iraq observed by GRACE

NASA Astrophysics Data System (ADS)

Mulder, G.; Olsthoorn, T. N.; Al-Manmi, D. A. M. A.; Schrama, E. J. O.; Smidt, E. H.

2014-10-01

Observations acquired by Gravity Recovery And Climate Experiment (GRACE) mission indicate a mass loss of 31 ± 3 km3 or 130 ± 14 mm in Northern Iraq between 2007 and 2009. This data is used as an independent validation of a hydrologic model of the region including lake mass variations. We developed a rainfall-runoff model for five tributaries of the Tigris River, based on local geology and climate conditions. Model inputs are precipitation from Tropical Rainfall Measurement Mission (TRMM) observations, and potential evaporation from GLDAS model parameters. Our model includes a representation of the karstified aquifers that cause large natural groundwater variations in this region. Observed river discharges were used to calibrate our model. In order to get the total mass variations, we corrected for lake mass variations derived from Moderate Resolution Imaging Spectroradiometer (MODIS) in combination with satellite altimetry and some in-situ data. Our rainfall-runoff model confirms that Northern Iraq suffered a drought between 2007 and 2009 and is consistent with the mass loss observed by GRACE over that period. Also, GRACE observed the annual cycle predicted by the rainfall-runoff model. The total mass depletion seen by GRACE between 2007 and 2009 is mainly explained by a lake mass depletion of 74 ± 4 mm and a natural groundwater depletion of 37 ± 6 mm. Our findings indicate that man-made groundwater extraction has a minor influence in this region while depletion of lake mass and geology play a key role.

Lateral and depth variations of coda Q in the Zagros region of Iran

NASA Astrophysics Data System (ADS)

Irandoust, Mohsen Ahmadzadeh; Sobouti, Farhad; Rahimi, Habib

2016-01-01

We have analyzed more than 2800 local earthquakes recorded by the Iranian National Seismic Network (INSN) and the Iranian Seismological Center (IRSC) to estimate coda wave quality factor, Q c , in the Zagros fold and thrust belt and the Sanandaj-Sirjan metamorphic zone in Iran. We used the single backscattering model to investigate lateral and depth variations of Q c in the study region. In the interior of Zagros, no strong lateral variation in attenuation parameters is observed. In SE Zagros (the Bandar-Abbas region) where transition to the Makran subduction setting begins, the medium shows lower attenuation. The average frequency relations for the SSZ, the Bandar-Abbas region, and the Zagros are Q c = (124 ± 11) f 0.82 ± 0.04, Q c = (109 ± 2) f 0.99 ± 0.01, and Q c = (85 ± 5) f 1.06 ± 0.03, respectively. To investigate the depth variation of Q c , 18 time windows between 5 and 90 s and at two epicentral distance ranges of R < 100 km and 100 < R < 200 km were considered. It was observed that with increasing coda lapse time, Q 0 ( Q c at 1 Hz) and n (frequency dependence factor) show increasing and decreasing trends, respectively. Beneath the SSZ and at depths of about 50 to 80 km, there is a correlation between the reported low velocity medium and the observed sharp change in the trend of Q 0 and n curves. In comparison with results obtained in other regions of the Iranian plateau, the Zagros along with the Alborz Mountains in the north show highest attenuation of coda wave and strongest frequency dependence, an observation that reflects the intense seismicity and active faulting in these mountain ranges. We also observe a stronger depth dependence of attenuation in the Zagros and SSZ compared to central Iran, indicating a thicker lithosphere in the Zagros region than in central Iran.

Regional differences in prescribing quality among elder veterans and the impact of rural residence

PubMed Central

Lund, BC; Charlton, ME; Steinman, MA; Kaboli, PJ

2014-01-01

Purpose Medication safety is a critical concern for older adults. Regional variation in potentially inappropriate prescribing practices may reflect important differences in health care quality. Therefore, the objectives of this study were to characterize prescribing quality variation among older adults across geographic region, and to compare prescribing quality across rural versus urban residence. Methods Cross-sectional study of 1,549,824 older adult veterans with regular Veterans Affairs (VA) primary care and medication use during fiscal year 2007. Prescribing quality was measured by 4 indicators of potentially inappropriate prescribing: Zhan criteria drugs to avoid, Fick criteria drugs to avoid, therapeutic duplication, and drug-drug interactions. Frequency differences across region and rural-urban residence were compared using adjusted odds-ratios. Findings Significant regional variation was observed for all indicators. Zhan criteria frequencies ranged from 13.2% in the Northeast to 21.2% in the South. Nationally, rural veterans had a significantly increased risk for inappropriate prescribing according to all quality indicators. However, regional analyses revealed this effect was limited to the South and Northeast, whereas rural residence was neutral in the Midwest and protective in the West. Conclusions Significant regional variation in prescribing quality was observed among older adult veterans, mirroring recent findings among Medicare beneficiaries. The association between rurality and prescribing quality is heterogeneous, and relying solely on national estimates may yield misleading conclusions. While we documented important variations in prescribing quality, the underlying factors driving these trends remain unknown, and they are a vital area for future research affecting older adults in both VA and non-VA health systems. PMID:23551647

Remote sensing and geologic studies of the planetary crusts

NASA Technical Reports Server (NTRS)

Hawke, B. R.

1983-01-01

Dark haloed craters and regions of the Moon which were sites of ancient volcanism were remotely sensed as well as KREEP deposits in the Inbrium region. The relationship between geology and geochemistry in the Undarum/Spumans region was also examined. Results are summarized for observations of the Reiner Gamma formation, studies of impact cratering mechanics and processes, spectral variations of asteroidal surfaces, albedo and color variations on Ganymede, and studies of lunar impact structures.

Regulatory Architecture of Gene Expression Variation in the Threespine Stickleback Gasterosteus aculeatus.

PubMed

Pritchard, Victoria L; Viitaniemi, Heidi M; McCairns, R J Scott; Merilä, Juha; Nikinmaa, Mikko; Primmer, Craig R; Leder, Erica H

2017-01-05

Much adaptive evolutionary change is underlain by mutational variation in regions of the genome that regulate gene expression rather than in the coding regions of the genes themselves. An understanding of the role of gene expression variation in facilitating local adaptation will be aided by an understanding of underlying regulatory networks. Here, we characterize the genetic architecture of gene expression variation in the threespine stickleback (Gasterosteus aculeatus), an important model in the study of adaptive evolution. We collected transcriptomic and genomic data from 60 half-sib families using an expression microarray and genotyping-by-sequencing, and located expression quantitative trait loci (eQTL) underlying the variation in gene expression in liver tissue using an interval mapping approach. We identified eQTL for several thousand expression traits. Expression was influenced by polymorphism in both cis- and trans-regulatory regions. Trans-eQTL clustered into hotspots. We did not identify master transcriptional regulators in hotspot locations: rather, the presence of hotspots may be driven by complex interactions between multiple transcription factors. One observed hotspot colocated with a QTL recently found to underlie salinity tolerance in the threespine stickleback. However, most other observed hotspots did not colocate with regions of the genome known to be involved in adaptive divergence between marine and freshwater habitats. Copyright © 2017 Pritchard et al.

Regulatory Architecture of Gene Expression Variation in the Threespine Stickleback Gasterosteus aculeatus

PubMed Central

Pritchard, Victoria L.; Viitaniemi, Heidi M.; McCairns, R. J. Scott; Merilä, Juha; Nikinmaa, Mikko; Primmer, Craig R.; Leder, Erica H.

2016-01-01

Much adaptive evolutionary change is underlain by mutational variation in regions of the genome that regulate gene expression rather than in the coding regions of the genes themselves. An understanding of the role of gene expression variation in facilitating local adaptation will be aided by an understanding of underlying regulatory networks. Here, we characterize the genetic architecture of gene expression variation in the threespine stickleback (Gasterosteus aculeatus), an important model in the study of adaptive evolution. We collected transcriptomic and genomic data from 60 half-sib families using an expression microarray and genotyping-by-sequencing, and located expression quantitative trait loci (eQTL) underlying the variation in gene expression in liver tissue using an interval mapping approach. We identified eQTL for several thousand expression traits. Expression was influenced by polymorphism in both cis- and trans-regulatory regions. Trans-eQTL clustered into hotspots. We did not identify master transcriptional regulators in hotspot locations: rather, the presence of hotspots may be driven by complex interactions between multiple transcription factors. One observed hotspot colocated with a QTL recently found to underlie salinity tolerance in the threespine stickleback. However, most other observed hotspots did not colocate with regions of the genome known to be involved in adaptive divergence between marine and freshwater habitats. PMID:27836907

Climate and Edaphic Controls on Humid Tropical Forest Tree Height

NASA Astrophysics Data System (ADS)

Yang, Y.; Saatchi, S. S.; Xu, L.

2014-12-01

Uncertainty in the magnitude and spatial variations of forest carbon density in tropical regions is due to under sampling of forest structure from inventory plots and the lack of regional allometry to estimate the carbon density from structure. Here we quantify the variation of tropical forest structure by using more than 2.5 million measurements of canopy height from systematic sampling of Geoscience Laser Altimeter System (GLAS) satellite observations between 2004 to 2008 and examine the climate and edaphic variables influencing the variations. We used top canopy height of GLAS footprints (~ 0.25 ha) to grid the statistical mean and 90 percentile of samples at 0.5 degrees to capture the regional variability of large trees in tropics. GLAS heights were also aggregated based on a stratification of tropical regions using soil, elevation, and forest types. Both approaches provided consistent patterns of statistically dominant large trees and the least heterogeneity, both as strong drivers of distribution of high biomass forests. Statistical models accounting for spatial autocorrelation suggest that climate, soil and spatial features together can explain more than 60% of the variations in observed tree height information, while climate-only variables explains about one third of the first-order changes in tree height. Soil basics, including physical compositions such as clay and sand contents, chemical properties such as PH values and cation-exchange capacity, as well as biological variables such as organic matters, all present independent but statistically significant relationships to tree height variations. The results confirm other landscape and regional studies that soil fertility, geology and climate may jointly control a majority of the regional variations of forest structure in pan-tropics and influencing both biomass stocks and dynamics. Consequently, other factors such as biotic and disturbance regimes, not included in this study, may have less influence on regional variations but strongly mediate landscape and small-scale forest structure and dynamics.

Unexpected High Intragenomic Variation in Two of Three Major Pest Thrips Species Does Not Affect Ribosomal Internal Transcribed Spacer 2 (ITS2) Utility for Thrips Identification

PubMed Central

Dickey, Aaron M.; Seal, Dakshina R.; Shatters, Robert G.; Osborne, Lance S.; McKenzie, Cindy L.

2017-01-01

The mitochondrial cytochrome oxidase I gene (mtCO1) and the ribosomal internal transcribed spacer 2 region (ITS2) are among the most widely used molecular markers for insect taxonomic characterization. Three economically important species of thrips, Scirtothrips dorsalis, Thrips palmi, and Frankliniella occidentalis were selected to examine the extent of intragenomic variation within these two marker regions in the family Thripidae, and determine if this variation would affect the utility of markers in thrips molecular diagnostics. For each species, intragenomic (within individual) variation and intergenomic (among individuals) variation was assessed by cloning and sequencing PCR-amplified copies. Intergenomic variation was generally higher than intragenomic variation except in cases where intergenomic variation was very low, as in mtCO1 from S. dorsalis and F. occidentalis. Intragenomic variation was detected in both markers in all three of the thrips species, however, 2–3 times more intragenomic variation was observed for ITS2 than mtCO1 in both S. dorsalis and T. palmi. Furthermore, levels of intragenomic variation were low for both of the genes in F. occidentalis. In all of the three thrips species, no sex-based clustering of haplotypes was observed in either marker. Unexpected high intragenomic variation in ITS2 for two of three thrips species did not interfere with thrips diagnostics. However, caution should be taken in applying ITS2 to certain studies of S. dorsalis and T. palmi when high levels of intragenomic variation could be problematic or confounding. In such studies, mtCO1 may be a preferable marker. Possible reasons for discrepancies in intragenomic variation among genomic regions are discussed. PMID:28984819

Molecular Population Genetics of the Alcohol Dehydrogenase Gene Region of DROSOPHILA MELANOGASTER

PubMed Central

Aquadro, Charles F.; Desse, Susan F.; Bland, Molly M.; Langley, Charles H.; Laurie-Ahlberg, Cathy C.

1986-01-01

Variation in the DNA restriction map of a 13-kb region of chromosome II including the alcohol dehydrogenase structural gene (Adh) was examined in Drosophila melanogaster from natural populations. Detailed analysis of 48 D. melanogaster lines representing four eastern United States populations revealed extensive DNA sequence variation due to base substitutions, insertions and deletions. Cloning of this region from several lines allowed characterization of length variation as due to unique sequence insertions or deletions [nine sizes; 21–200 base pairs (bp)] or transposable element insertions (several sizes, 340 bp to 10.2 kb, representing four different elements). Despite this extensive variation in sequences flanking the Adh gene, only one length polymorphism is clearly associated with altered Adh expression (a copia element approximately 250 bp 5' to the distal transcript start site). Nonetheless, the frequency spectra of transposable elements within and between Drosophila species suggests they are slightly deleterious. Strong nonrandom associations are observed among Adh region sequence variants, ADH allozyme (Fast vs. Slow), ADH enzyme activity and the chromosome inversion ln(2L) t. Phylogenetic analysis of restriction map haplotypes suggest that the major twofold component of ADH activity variation (high vs. low, typical of Fast and Slow allozymes, respectively) is due to sequence variation tightly linked to and possibly distinct from that underlying the allozyme difference. The patterns of nucleotide and haplotype variation for Fast and Slow allozyme lines are consistent with the recent increase in frequency and spread of the Fast haplotype associated with high ADH activity. These data emphasize the important role of evolutionary history and strong nonrandom associations among tightly linked sequence variation as determinants of the patterns of variation observed in natural populations. PMID:3026893

Wave like signatures in aerosol optical depth and associated radiative impacts over the central Himalayan region

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shukla, K. K.; Phanikumar, D. V.; Kumar, K.  Niranjan

2015-10-01

Doppler Lidar and Multi-Filter Rotating Shadowband Radiometer (MFRSR) observations are utilized to show wave like signatures in aerosol optical depth (AOD) during daytime boundary layer evolution over the Himalayan region. Fourier analysis depicted 60–80 min periods dominant during afternoon hours, implying that observed modulations could be plausible reason for the AOD forenoon–afternoon asymmetry which was previously reported. Inclusion of wave amplitude in diurnal variation of aerosol radiative forcing estimates showed ~40% additional warming in the atmosphere relative to mean AOD. The present observations emphasize the importance of wave induced variations in AOD and radiation budget over the site.

A survey of copy number variation in the porcine genome detected from whole-genome sequence

USDA-ARS?s Scientific Manuscript database

An important challenge to post-genomic biology is relating observed phenotypic variation to the underlying genotypic variation. Genome-wide association studies (GWAS) have made thousands of connections between single nucleotide polymorphisms (SNPs) and phenotypes, implicating regions of the genome t...

Spectral Structure of Temperature Variations in the Midlatitude Mesopause Region

NASA Astrophysics Data System (ADS)

Perminov, V. I.; Semenov, A. I.; Medvedeva, I. V.; Pertsev, N. N.; Sukhodoev, V. A.

2018-01-01

Long-term series of midnight temperature in the mesopause region have been obtained from spectral observations of hydroxyl airglow emission (OH(6-2) λ840 nm band) at the Tory station (52° N, 103° E) in 2008-2016 and Zvenigorod (56° N, 37° E) station in 2000-2016. On their basis, the Lomb-Scargle spectra of the variations in the period range from 12 days to 11 years have been determined. Estimates of the amplitudes of statistically significant temperature fluctuations are made. The dominant oscillations are the first and second harmonics of the annual variation, the amplitudes of which are 23-24 K and 4-7 K, respectively. The remaining variations, the number of which was 16 for the Tory and 22 for Zvenigorod stations, have small amplitudes (0.5-3 K). Oscillations with combinational frequencies, which arise from modulation of the annual variation harmonics, are observed in a structure of the variation spectra in addition to interannual oscillations (periods from 2 to 11 years) and harmonics of the annual variation (up to its tenth harmonic).

Large-Scale Sidereal Anisotropy of Galactic Cosmic-Ray Intensity Observed by the Tibet Air Shower Array

NASA Astrophysics Data System (ADS)

Amenomori, M.; Ayabe, S.; Cui, S. W.; Danzengluobu; Ding, L. K.; Ding, X. H.; Feng, C. F.; Feng, Z. Y.; Gao, X. Y.; Geng, Q. X.; Guo, H. W.; He, H. H.; He, M.; Hibino, K.; Hotta, N.; Hu, Haibing; Hu, H. B.; Huang, J.; Huang, Q.; Jia, H. Y.; Kajino, F.; Kasahara, K.; Katayose, Y.; Kato, C.; Kawata, K.; Labaciren; Le, G. M.; Li, J. Y.; Lu, H.; Lu, S. L.; Meng, X. R.; Mizutani, K.; Mu, J.; Munakata, K.; Nagai, A.; Nanjo, H.; Nishizawa, M.; Ohnishi, M.; Ohta, I.; Onuma, H.; Ouchi, T.; Ozawa, S.; Ren, J. R.; Saito, T.; Sakata, M.; Sasaki, T.; Shibata, M.; Shiomi, A.; Shirai, T.; Sugimoto, H.; Takita, M.; Tan, Y. H.; Tateyama, N.; Torii, S.; Tsuchiya, H.; Udo, S.; Utsugi, T.; Wang, B. S.; Wang, H.; Wang, X.; Wang, Y. G.; Wu, H. R.; Xue, L.; Yamamoto, Y.; Yan, C. T.; Yang, X. C.; Yasue, S.; Ye, Z. H.; Yu, G. C.; Yuan, A. F.; Yuda, T.; Zhang, H. M.; Zhang, J. L.; Zhang, N. J.; Zhang, X. Y.; Zhang, Y.; Zhang, Yi; Zhaxisangzhu; Zhou, X. X.; Tibet Asγ Collaboration

2005-06-01

We present the large-scale sidereal anisotropy of Galactic cosmic-ray intensity in the multi-TeV region observed with the Tibet-III air shower array during the period from 1999 through 2003. The sidereal daily variation of cosmic rays observed in this experiment shows an excess of relative intensity around 4-7 hr local sidereal time as well as a deficit around 12 hr local sidereal time. While the amplitude of the excess is not significant when averaged over all declinations, the excess in individual declination bands becomes larger and clearer as the viewing direction moves toward the south. The maximum phase of the excess intensity changes from ~7 hr at the Northern Hemisphere to ~4 hr at the equatorial region. We also show that both the amplitude and the phase of the first harmonic vector of the daily variation are remarkably independent of primary energy in the multi-TeV region. This is the first result determining the energy and declination dependences of the full 24 hr profiles of the sidereal daily variation in the multi-TeV region with a single air shower experiment.

SEASONAL AND REGIONAL VARIATIONS OF PRIMARY AND SECONDARY ORGANIC AEROSOLS OVER THE CONTINENTAL UNITED STATES: SEMI-EMPIRICAL ESTIMATES AND MODEL EVALUATION

EPA Science Inventory

Seasonal and regional variations of primary (OC_pri) and secondary (OC_sec) organic carbon aerosols across the continental U.S. for the year 2001 were examined by a semi-empirical technique using observed OC and elemental carbon (EC) data from 142 routine moni...

Differential influences of local subpopulations on regional diversity and differentiation for greater sage-grouse (Centrocercus urophasianus)

USGS Publications Warehouse

Row, Jeffery R.; Oyler-McCance, Sara J.; Fedy, Brad C.

2016-01-01

The distribution of spatial genetic variation across a region can shape evolutionary dynamics and impact population persistence. Local population dynamics and among-population dispersal rates are strong drivers of this spatial genetic variation, yet for many species we lack a clear understanding of how these population processes interact in space to shape within-species genetic variation. Here, we used extensive genetic and demographic data from 10 subpopulations of greater sage-grouse to parameterize a simulated approximate Bayesian computation (ABC) model and (i) test for regional differences in population density and dispersal rates for greater sage-grouse subpopulations in Wyoming, and (ii) quantify how these differences impact subpopulation regional influence on genetic variation. We found a close match between observed and simulated data under our parameterized model and strong variation in density and dispersal rates across Wyoming. Sensitivity analyses suggested that changes in dispersal (via landscape resistance) had a greater influence on regional differentiation, whereas changes in density had a greater influence on mean diversity across all subpopulations. Local subpopulations, however, varied in their regional influence on genetic variation. Decreases in the size and dispersal rates of central populations with low overall and net immigration (i.e. population sources) had the greatest negative impact on genetic variation. Overall, our results provide insight into the interactions among demography, dispersal and genetic variation and highlight the potential of ABC to disentangle the complexity of regional population dynamics and project the genetic impact of changing conditions.

Mapping the Solar Wind from its Source Region into the Outer Corona

NASA Technical Reports Server (NTRS)

Esser, Ruth

1998-01-01

Knowledge of the radial variation of the plasma conditions in the coronal source region of the solar wind is essential to exploring coronal heating and solar wind acceleration mechanisms. The goal of the present proposal is to determine as many plasma parameters in that region as possible by coordinating different observational techniques, such as Interplanetary Scintillation Observations, spectral line intensity observations, polarization brightness measurements and X-ray observations. The inferred plasma parameters are then used to constrain solar wind models.

D region depletions above the Persian Gulf

NASA Astrophysics Data System (ADS)

Givishvili, G. V.; Leshchenko, L. N.

1993-01-01

The extraordinary delay of the daily variation of absorption and electron density observed in the ionospheric D region above the Persian Gulf in 1976 observed from the research vessel 'Akademik Kurchatov' may be a consequence of air pollution by oil production by-products. It is suggested that the Gulf war might also have caused a lower ozone abundance in that region.

EXTINCTION AND POLYCYCLIC AROMATIC HYDROCARBON INTENSITY VARIATIONS ACROSS THE H II REGION IRAS 12063-6259

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stock, D. J.; Peeters, E.; Otaguro, J. N.

The spatial variations in polycyclic aromatic hydrocarbon (PAH) band intensities are normally attributed to the physical conditions of the emitting PAHs, however in recent years it has been suggested that such variations are caused mainly by extinction. To resolve this question, we have obtained near-infrared (NIR), mid-infrared (MIR), and radio observations of the compact H II region IRAS 12063-6259. We use these data to construct multiple independent extinction maps and also to measure the main PAH features (6.2, 7.7, 8.6, and 11.2 {mu}m) in the MIR. Three extinction maps are derived: the first using the NIR hydrogen lines and casemore » B recombination theory; the second combining the NIR data with radio data; and the third making use of the Spitzer/IRS MIR observations to measure the 9.8 {mu}m silicate absorption feature using the Spoon method and PAHFIT (as the depth of this feature can be related to overall extinction). The silicate absorption over the bright, southern component of IRAS 12063-6259 is almost absent while the other methods find significant extinction. While such breakdowns of the relationship between the NIR extinction and the 9.8 {mu}m absorption have been observed in molecular clouds, they have never been observed for H II regions. We then compare the PAH intensity variations in the Spitzer/IRS data after dereddening to those found in the original data. It was found that in most cases, the PAH band intensity variations persist even after dereddening, implying that extinction is not the main cause of the PAH band intensity variations.« less

Localized variations in electronic structure of AlGaN/GaN heterostructures grown by molecular-beam epitaxy

NASA Astrophysics Data System (ADS)

Smith, K. V.; Yu, E. T.; Elsass, C. R.; Heying, B.; Speck, J. S.

2001-10-01

Local electronic properties in a molecular-beam-epitaxy-grown AlxGa1-xN/GaN heterostructure field-effect transistor epitaxial layer structure are probed using depth-resolved scanning capacitance microscopy. Theoretical analysis of contrast observed in scanning capacitance images acquired over a range of bias voltages is used to assess the possible structural origins of local inhomogeneities in electronic structure, which are shown to be concentrated in areas where Ga droplets had formed on the surface during growth. Within these regions, there are significant variations in the local electronic structure that are attributed to variations in both AlxGa1-xN layer thickness and Al composition. Increased charge trapping is also observed in these regions.

Regional dust deposits on Mars - Physical properties, age, and history

NASA Astrophysics Data System (ADS)

Christensen, P. R.

1986-03-01

This paper presents a description of the use of Viking infrared thermal mapper (IRTM), earth-based radar, and visual observations for the study of the existence of regional dust deposits. It is pointed out that these observations provide estimates of particle size, rock abundance, surface texture, thermal emissivity, and albedo. These estimates can be used to characterize surface deposits and to determine the degree of surface mantling. Attention is given to the regolith properties, atmospheric dust properties, and a model for formation of low-inertia regions. It is found that global dust storms deposit currently approximately 25 microns of material per year in the equatorial region. Over geologic time this value may vary from 0 to 250 microns due to variations in atmospheric conditions produced by orbital variations.

Cross-species amplification of mitochondrial DNA sequence-tagged-site markers in conifers: the nature of polymorphism and variation within and among species in Picea.

PubMed

Jaramillo-Correa, J P; Bousquet, J; Beaulieu, J; Isabel, N; Perron, M; Bouillé, M

2003-05-01

Primers previously developed to amplify specific non-coding regions of the mitochondrial genome in Angiosperms, and new primers for additional non-coding mtDNA regions, were tested for their ability to direct DNA amplification in 12 conifer taxa and to detect sequence-tagged-site (STS) polymorphisms within and among eight species in Picea. Out of 12 primer pairs, nine were successful at amplifying mtDNA in most of the taxa surveyed. In conifers, indels and substitutions were observed for several loci, allowing them to distinguish between families, genera and, in some cases, between species within genera. In Picea, interspecific polymorphism was detected for four loci, while intraspecific variation was observed for three of the mtDNA regions studied. One of these (SSU rRNA V1 region) exhibited indel polymorphisms, and the two others ( nad1 intron b/c and nad5 intron1) revealed restriction differences after digestion with Sau3AI (PCR-RFLP). A fourth locus, the nad4L- orf25 intergenic region, showed a multibanding pattern for most of the spruce species, suggesting a possible gene duplication. Maternal inheritance, expected for mtDNA in conifers, was observed for all polymorphic markers except the intergenic region nad4L- orf25. Pooling of the variation observed with the remaining three markers resulted in two to six different mtDNA haplotypes within the different species of Picea. Evidence for intra-genomic recombination was observed in at least two taxa. Thus, these mitotypes are likely to be more informative than single-locus haplotypes. They should be particularly useful for the study of biogeography and the dynamics of hybrid zones.

Ionospheric TEC from the Turkish Permanent GNSS Network (TPGN) and comparison with ARMA and IRI models

NASA Astrophysics Data System (ADS)

Ansari, Kutubuddin; Panda, Sampad Kumar; Althuwaynee, Omar F.; Corumluoglu, Ozsen

2017-09-01

The present study investigates the ionospheric Total Electron Content (TEC) variations in the lower mid-latitude Turkish region from the Turkish Permanent GNSS Network (TPGN) and International GNSS Services (IGS) observations during the year 2016. The corresponding vertical TEC (VTEC) predicted by Auto Regressive Moving Average (ARMA) and International Reference Ionosphere 2016 (IRI-2016) models are evaluated to realize their effectiveness over the region. The spatial, diurnal and seasonal behavior of VTEC and the relative VTEC variations are modeled with Ordinary Least Square Estimator (OLSE). The spatial behavior of modeled result during March equinox and June solstice indicates an inverse relationship of VTEC with the longitude across the region. On the other hand, the VTEC variation during September equinox and December solstice including March equinox and June solstice are decreasing with increase in latitude. The GNSS observed and modeled diurnal variation of the VTEC show that the VTEC slowly increases with dawn, attains a broader duration of peak around 09.00 to 12.00 UT, and thereafter decreases gradually reaching minimum around 21.00 UT. The seasonal variation of VTEC shows an annual mode, maxima in equinox and minima in solstice. The average value of VTEC during the June solstice is with slightly higher value than the March equinox though variations during the latter season is more. Moreover, the study shows minimum average value during December solstice compared to June solstice at all stations. The comparative analysis demonstrates the prediction errors by OLSE, ARMA and IRI remaining between 0.23 to 1.17%, 2.40 to 4.03% and 24.82 to 25.79% respectively. Also, the observed VTEC seasonal variation has good agreement with OLSE and ARMA models whereas IRI-VTEC often underestimated the observed value at each location. Hence, the deviations of IRI estimated VTEC compared to ARMA and OLSE models claim further improvements in IRI model over the Turkish region. Although IRI estimations are well accepted over the mid-latitudes but the performance over the lower mid-latitudes is not satisfactory and needs further improvement. The long-term TEC data from the TPGN network can be incorporated in the IRI under laying database with appropriate calibration for further improvement of estimation accuracy over the region.

MAVEN Observations of Solar Wind-Driven Magnetosonic Waves Heating the Martian Dayside Ionosphere

NASA Astrophysics Data System (ADS)

Fowler, C. M.; Andersson, L.; Ergun, R. E.; Harada, Y.; Hara, T.; Collinson, G.; Peterson, W. K.; Espley, J.; Halekas, J.; Mcfadden, J.; Mitchell, D. L.; Mazelle, C.; Benna, M.; Jakosky, B. M.

2018-05-01

We present Mars Atmosphere and Volatile EvolutioN observations of large-amplitude magnetosonic waves propagating through the magnetosheath into the Martian ionosphere near the subsolar point on the dayside of the planet. The observed waves grow in amplitude as predicted for a wave propagating into a denser, charged medium, with wave amplitudes reaching 25 nT, equivalent to ˜40% of the background field strength. These waves drive significant density and temperature variations (˜20% to 100% in amplitude) in the suprathermal electrons and light ion species (H+) that correlate with compressional fronts of the magnetosonic waves. Density and temperature variations are also observed for the ionospheric electrons, and heavy ion species (O+ and O2+); however, these variations are not in phase with the magnetic field variations. Whistler waves are observed at compressional wave fronts and are thought to be produced by unstable, anistropic suprathermal electrons. The magnetosonic waves drive significant ion and electron heating down to just above the exobase region. Ion heating rates are estimated to be between 0.03 and 0.2 eVs-1 per ion, and heavier ions could thus gain escape energy if located in this heating region for ˜10-70 s. The measured ionospheric density profile indicates severe ionospheric erosion above the exobase region, and this is likely caused by substantial ion outflow that is driven by the observed heating. The effectiveness of these magnetosonic waves to energize the plasma close to the exobase could have important implications for the long-term climate evolution for unmagnetized bodies that are exposed to the solar wind.

Variation in the macrofaunal community over large temporal and spatial scales in the southern Yellow Sea

NASA Astrophysics Data System (ADS)

Xu, Yong; Sui, Jixing; Yang, Mei; Sun, Yue; Li, Xinzheng; Wang, Hongfa; Zhang, Baolin

2017-09-01

To detect large, temporal- and spatial-scale variations in the macrofaunal community in the southern Yellow Sea, data collected along the western, middle and eastern regions of the southern Yellow Sea from 1958 to 2014 were organized and analyzed. Statistical methods such as cluster analysis, non-metric multidimensional scaling ordination (nMDS), permutational multivariate analysis of variance (PERMANOVA), redundancy analysis (RDA) and canonical correspondence analysis (CCA) were applied. The abundance of polychaetes increased in the western region but decreased in the eastern region from 1958 to 2014, whereas the abundance of echinoderms showed an opposite trend. For the entire macrofaunal community, Margalef's richness (d), the Shannon-Wiener index (H‧) and Pielou's evenness (J‧) were significantly lower in the eastern region when compared with the other two regions. No significant temporal differences were found for d and H‧, but there were significantly lower values of J‧ in 2014. Considerable variation in the macrofaunal community structure over the past several decades and among the geographical regions at the species, genus and family levels were observed. The species, genera and families that contributed to the temporal variation in each region were also identified. The most conspicuous pattern was the increase in the species Ophiura sarsii vadicola in the eastern region. In the western region, five polychaetes (Ninoe palmata, Notomastus latericeus, Paralacydonia paradoxa, Paraprionospio pinnata and Sternaspis scutata) increased consistently from 1958 to 2014. The dominance curves showed that both the species diversity and the dominance patterns were relatively stable in the western and middle regions. Environmental parameters such as depth, temperature and salinity could only partially explain the observed biological variation in the southern Yellow Sea. Anthropogenic activities such as demersal fishing and other unmeasured environmental variables may be more responsible for the long-term changes in the macrofaunal community.

Subtle porosity variation in the YBa2Cu3O(7-x) high-temperature superconductor revealed by ultrasonic imaging

NASA Technical Reports Server (NTRS)

Roth, D. J.; Generazio, E. R.; Stang, D. B.; Hepp, A. F.

1990-01-01

The characterization of global porosity variation within a nominally 93-percent-dense specimen of YBa2Cu3O(7-x) high-temperature superconductor is reported. With a computer-controlled scanning system, precision ultrasonic velocity measurements were obtained at 100 micron increments over an 8- by 8-mm area of the YBa2Cu3O(7-x) specimen. The measurements were used to form a color map of velocity variation across the scanned region of the specimen. Subtle velocity variation on the order of 1 percent was observed. The specimen was shown by experimental methods to be single-phase, untextured, and free of nonuniform residual microstresses. From this knowledge and an established velocity-density relationship, a likely conclusion is that the observed velocity variations are solely due to porosity variations of similar magnitude. Locating these subtle porosity variations is critical since they can result in an order of magnitude variation in J(sub c) for dense YBCO specimens. Thus, mapping the global porosity distribution within YBa2Cu3O(7-x) may reveal regions that have poorer superconducting properties. Ultrasonic velocity results are translated into useful microstructural information for the material scientist.

The variations of oxygen emissions in corresponding to Earth's aurora in low latitude region under influence of solar wind dynamics

NASA Astrophysics Data System (ADS)

Jamlongkul, P.; Wannawichian, S.

2017-12-01

Earth's aurora in low latitude region was studied via time variations of oxygen emission spectra, simultaneously with solar wind data. The behavior of spectrum intensity, in corresponding with solar wind condition, could be a trace of aurora in low latitude region including some effects of high energetic auroral particles. Oxygen emission spectral lines were observed by Medium Resolution Echelle Spectrograph (MRES) at 2.4-m diameter telescope at Thai National Observatory, Inthanon Mountain, Chiang Mai, Thailand, during 1-5 LT on 5 and 6 February 2017. The observed spectral lines were calibrated via Dech95 - 2D image processing program and Dech-Fits spectra processing program for spectrum image processing and spectrum wavelength calibration, respectively. The variations of observed intensities each day were compared with solar wind parameters, which are magnitude of IMF (|BIMF|) including IMF in RTN coordinate (BR, BT, BN), ion density (ρ), plasma flow pressure (P), and speed (v). The correlation coefficients between oxygen spectral emissions and different solar wind parameters were found to vary in both positive and negative behaviors.

Spatio-temporal Variations of Nitrogen Dioxide over Western China from Satellite Observations during 2005-2013

NASA Astrophysics Data System (ADS)

Cui, Y.; Lin, J.; Huang, B.; Song, C.

2015-12-01

Western China has experienced rapid urbanization and industrialization since the implementation of National Western Development Strategy by Chinese Government. Most resource-intensive industries and high-pollution factories had been moved from the east coast to Western China after 2000. In this research, the spatial and temporal variations of tropospheric NO2 concentration in 2005 - 2013 is analyzed based on the satellite observations by Ozone Measurement Instrument (OMI). The annual trends and seasonality of tropospheric NO2 over Western China are calculated. The results show that large increases are observed in urban areas and the polluted regions are expanding. Additionally, the seasonal patterns of some regions over Western China are changing significantly and more clean areas tend to changing from the characteristics of natural emissions to those of anthropogenic emissions. The spatial and temporal variations of NO2 concentrations are well responded to the rapid urbanization and industrialization over Western China.

Brightness Variations in the Solar Atmosphere as Seen by SOHO

NASA Astrophysics Data System (ADS)

Brkovic, A.; Rüedi, I.; Solanki, S. K.; Huber, M. C. E.; Stenflo, J. O.; Stucki, K.; Harrison, R.; Fludra, A.

We present preliminary results of a statistical analysis of the brightness variations of solar features at different levels in the solar atmosphere. We observed quiet Sun regions at disc centre using the Coronal Diagnostic Spectrometer (CDS) onboard the Solar and Heliospheric Observatory (SOHO). We find significant variability at all time scales in all parts of the quiet Sun, from darkest intranetwork to brightest network. Such variations are observed simultaneously in the chromospheric He I 584.33 Angstroms (2 \\cdot 10^4 K) line, the transition region O V 629.74 Angstroms (2.5 \\cdot 10^5 K) and coronal Mg IX 368.06 Angstroms (10^6 K) line. The relative variability is independent of brightness and most of the variability appears to take place on time scales longer than 5 minutes for all 3 spectral lines. No significant differences are observed between the different data sets.

Variations in the ceramide profile in different seasons and regions of the body contribute to stratum corneum functions.

PubMed

Ishikawa, Junko; Shimotoyodome, Yoshie; Ito, Shotaro; Miyauchi, Yuki; Fujimura, Tsutomu; Kitahara, Takashi; Hase, Tadashi

2013-03-01

The objective of this study was to clarify variations of the ceramide (CER) profile in human stratum corneum (SC) in different seasons and in different regions of the body and to estimate the contributions of CERs to the SC barrier and water-holding functions. Based on the information that there are great variations of SC functions among body sites, we compared the CER profiles obtained from ten different anatomical sites in healthy Japanese males in four seasons. Not only the physiological parameters of skin but also the CER profile showed body region and seasonal variations. The total CER level, the CER composition and the C34-CER[NS] species displayed strong correlations with the values of transepidermal water loss and capacitance throughout the body. Especially in the cheek, a strong correlation between the capacitance and the CER profile was observed. There were seasonal variations of the CER profile in the lip, upper arm and palm. Our results indicate that regional and seasonal variations of the CER profile may contribute to SC functions.

Evidence of Dynamic Crustal Deformation in Tohoku, Japan, From Time-Varying Receiver Functions

NASA Astrophysics Data System (ADS)

Porritt, R. W.; Yoshioka, S.

2017-10-01

Temporal variation of crustal structure is key to our understanding of Earth processes on human timescales. Often, we expect that the most significant structural variations are caused by strong ground shaking associated with large earthquakes, and recent studies seem to confirm this. Here we test the possibility of using P receiver functions (PRF) to isolate structural variations over time. Synthetic receiver function tests indicate that structural variation could produce PRF changes on the same order of magnitude as random noise or contamination by local earthquakes. Nonetheless, we find significant variability in observed receiver functions over time at several stations located in northeastern Honshu. Immediately following the Tohoku-oki earthquake, we observe high PRF variation clustering spatially, especially in two regions near the beginning and end of the rupture plane. Due to the depth sensitivity of PRF and the timescales over which this variability is observed, we infer this effect is primarily due to fluid migration in volcanic regions and shear stress/strength reorganization. While the noise levels in PRF are high for this type of analysis, by sampling small data sets, the computational cost is lower than other methods, such as ambient noise, thereby making PRF a useful tool for estimating temporal variations in crustal structure.

Effects of gender and regional dialect on prosodic patterns in American English

PubMed Central

Clopper, Cynthia G.; Smiljanic, Rajka

2011-01-01

While cross-dialect prosodic variation has been well established for many languages, most variationist research on regional dialects of American English has focused on the vowel system. The current study was designed to explore prosodic variation in read speech in two regional varieties of American English: Southern and Midland. Prosodic dialect variation was analyzed in two domains: speaking rate and the phonetic expression of pitch movements associated with accented and phrase-final syllables. The results revealed significant effects of regional dialect on the distributions of pauses, pitch accents, and phrasal-boundary tone combinations. Significant effects of talker gender were also observed on the distributions of pitch accents and phrasal-boundary tone combinations. The findings from this study demonstrate that regional and gender identity features are encoded in part through prosody, and provide further motivation for the close examination of prosodic patterns across regional and social varieties of American English. PMID:21686317

Solar Variability from 240 to 1750 nm in Terms of Faculae Brightening and Sunspot Darkening from SCIAMACHY

NASA Astrophysics Data System (ADS)

Pagaran, J.; Weber, M.; Burrows, J.

2009-08-01

The change of spectral decomposition of the total radiative output on various timescales of solar magnetic activity is of large interest to terrestrial and solar-stellar atmosphere studies. Starting in 2002, SCIAMACHY was the first satellite instrument to observe daily solar spectral irradiance (SSI) continuously from 230 nm (UV) to 1750 nm (near-infrared; near-IR). In order to address the question of how much UV, visible (vis), and IR spectral regions change on 27 day and 11 year timescales, we parameterize short-term SSI variations in terms of faculae brightening (Mg II index) and sunspot darkening (photometric sunspot index) proxies. Although spectral variations above 300 nm are below 1% and, therefore, well below the accuracy of absolute radiometric calibration, relative accuracy for short-term changes is shown to be in the per mill range. This enables us to derive short-term spectral irradiance variations from the UV to the near-IR. During Halloween solar storm in 2003 with a record high sunspot area, we observe a reduction of 0.3% in the near-IR to 0.5% in the vis and near-UV. This is consistent with a 0.4% reduction in total solar irradiance (TSI). Over an entire 11 year solar cycle, SSI variability covering simultaneously the UV, vis, and IR spectral regions have not been directly observed so far. Using variations of solar proxies over solar cycle 23, solar cycle spectral variations have been estimated using scaling factors that best matched short-term variations of SCIAMACHY. In the 300-400 nm region, which strongly contributes to TSI solar cycle change, a contribution of 34% is derived from SCIAMACHY observations, which is lower than the reported values from SUSIM satellite data and the empirical SATIRE model. The total UV contribution (below 400 nm) to TSI solar cycle variations is estimated to be 55%.

Assimilation of HF Radar Observations in the Chesapeake-Delaware Bay Region Using the Navy Coastal Ocean Model (NCOM) and the Four-Dimensional Variational (4DVAR) Method

DTIC Science & Technology

2015-01-01

6. Zhang WG, Wilkin JL, Arango HG. Towards an integrated observation and modeling system in the New York Bight using variational methods. Part 1...1992;7:262- 72. ---- -- - ---------------------------- References 391 17. Rosmond TE, Teixeria J, Pcng M, Hogan TF, Pauley R. Navy operational global

The investigation of short-term variations of Jupiter's Synchrotron Radiation with the large radio interferometer GMRT

NASA Astrophysics Data System (ADS)

Imai, Kota; Misawa, Hiroaki; Bhardwaj, Anil; Tsuchiya, Fuminori; Doi, Akihiro; Kondo, Tetsuro; Morioka, Akira

The goal of this research is to investigate physical processes of short term variations of Jupiter's Synchrotron Radiation (JSR) which is important for revealing the origin of relativistic electrons at Jupiter's Radiation Belt (JRB). JSR has been frequently observed by radio interferometers and single dish radio telescopes to understand characteristics of the spatial distribution and variations inferring dynamics and energetics of the relativistic electrons. Observations with radio interferometers have showed JSR source structure (Dunn et al., 2003, etc), and contributed to modeling of JRB (Garrett et al., 2005, etc). On the other hand, observations of total intensity of JSR with a single dish radio telescope have revealed characteristics of time variable phenomena. The time variations are indispensable parameters giving clues to understand particle source and/or loss processes which characterize the formation of JRB. Recently, Miyoshi et al. (1999) and Bolton et al. (2002) confirmed the existence of short term (days to weeks) variations in JSR. The detection of short term variations makes a great impact on the study on JRB because it has been believed for a long time that the strong internal magnetic field and rapidly rotating magnetosphere of Jupiter protect the JRB region from solar wind variations and magnetospheric disturbances as theoretically suggested by de Pater and Goertz (1994). So far we have made the JSR observations to investigate the short term variations of mainly several hundreds MHz JSR which is emitted by low energy particles (< 10MeV) and has been observed systematically only few times (Miyoshi et al., 1999, Misawa et al., 2005, etc). The latter observation suggested that the short term variation is a general feature at low frequencies. Therefore, it is essential to study its detailed characteristics and the causalities. Theoretically expected physical processes which are responsible for the short term variation are enhanced radial diffusion initiated by solar UV flux enhancement and scattering of the JRB particles toward the polar region by whistler-mode wave, although it is still not known whether solar UV flux or whistler-mode wave is a dominant initiator. In order to investigate physical processes of short term variations, we observed JSR with the Giant Metrewave Radio Telescope (GMRT) from 23rd May 2007 to 27th June 2007. Bhardwaj et al. (2005) first made JSR observations with the GMRT for about a week in 2003 and suggested that JSR flux increased with Solar 10.7cm radio flux (F10.7), which is correlated to solar UV flux. On the other hand, the initial results of GMRT observation in 2007 show that the total flux of JSR varies in several days but is not strongly correlated to F10.7. Then, when the total flux of JSR increased, the peak position of JSR moved outward, and the flux of JSR increased in the outer emitting region. It is implied that the other acceleration processes cause these variations except the enhanced radial diffusion, because enhanced radial diffusion increases the flux of JSR and the peak position of JSR moves toward Jupiter. In this presentation, we will discuss the variations of JSR spatial distribution shown in the 2007 GMRT observation results. Acknowledgement: We would like to appreciate helpful support of Ishwara Chandra C. H. And, we thank the staff of the GMRT who have made these observations possible. GMRT is run by the National Centre for Radio Astrophysics of the Tata Institute of Fundamental Research.

Regional Variation in 30-Day Ischemic Stroke Outcomes for Medicare Beneficiaries Treated in Get With The Guidelines-Stroke Hospitals.

PubMed

Thompson, Michael P; Zhao, Xin; Bekelis, Kimon; Gottlieb, Daniel J; Fonarow, Gregg C; Schulte, Phillip J; Xian, Ying; Lytle, Barbara L; Schwamm, Lee H; Smith, Eric E; Reeves, Mathew J

2017-08-01

We explored regional variation in 30-day ischemic stroke mortality and readmission rates and the extent to which regional differences in patients, hospitals, healthcare resources, and a quality of care composite care measure explain the observed variation. This ecological analysis aggregated patient and hospital characteristics from the Get With The Guidelines-Stroke registry (2007-2011), healthcare resource data from the Dartmouth Atlas of Health Care (2006), and Medicare fee-for-service data on 30-day mortality and readmissions (2007-2011) to the hospital referral region (HRR) level. We used linear regression to estimate adjusted HRR-level 30-day outcomes, to identify HRR-level characteristics associated with 30-day outcomes, and to describe which characteristics explained variation in 30-day outcomes. The mean adjusted HRR-level 30-day mortality and readmission rates were 10.3% (SD=1.1%) and 13.1% (SD=1.1%), respectively; a modest, negative correlation ( r =-0.17; P =0.003) was found between one another. Demographics explained more variation in readmissions than mortality (25% versus 6%), but after accounting for demographics, comorbidities accounted for more variation in mortality compared with readmission rates (17% versus 7%). The combination of hospital characteristics and healthcare resources explained 11% and 16% of the variance in mortality and readmission rates, beyond patient characteristics. Most of the regional variation in mortality (65%) and readmission (50%) rates remained unexplained. Thirty-day mortality and readmission rates vary substantially across HRRs and exhibit an inverse relationship. While regional variation in 30-day outcomes were explained by patient and hospital factors differently, much of the regional variation in both outcomes remains unexplained. © 2017 American Heart Association, Inc.

Midlatitude D region variations measured from broadband radio atmospherics

NASA Astrophysics Data System (ADS)

Han, Feng

The high power, broadband very low frequency (VLF, 3--30 kHz) and extremely low frequency (ELF, 3--3000 Hz) electromagnetic waves generated by lightning discharges and propagating in the Earth-ionosphere waveguide can be used to measure the average electron density profile of the lower ionosphere (D region) across the wave propagation path due to several reflections by the upper boundary (lower ionosphere) of the waveguide. This capability makes it possible to frequently and even continuously monitor the D region electron density profile variations over geographically large regions, which are measurements that are essentially impossible by other means. These guided waves, usually called atmospherics (or sferics for short), are recorded by our sensors located near Duke University. The purpose of this work is to develop and implement algorithms to derive the variations of D region electron density profile which is modeled by two parameters (one is height and another is sharpness), by comparing the recorded sferic spectra to a series of model simulated sferic spectra from using a finite difference time domain (FDTD) code. In order to understand the time scales, magnitudes and sources for the midlatitude nighttime D region variations, we analyzed the sferic data of July and August 2005, and extracted both the height and sharpness of the D region electron density profile. The heights show large temporal variations of several kilometers on some nights and the relatively stable behavior on others. Statistical calculations indicate that the hourly average heights during the two months range between 82.0 km and 87.2 km with a mean value of 84.9 km and a standard deviation of 1.1 km. We also observed spatial variations of height as large as 2.0 km over 5 degrees latitudes on some nights, and no spatial variation on others. In addition, the measured height variations exhibited close correlations with local lightning occurrence rate on some nights but no correlation with local lightning or displaced lightning on others. The nighttime profile sharpness during 2.5 hours in two different nights was calculated, and the results were compared to the equivalent sharpness derived from International Reference Ionosphere (IRI) models. Both the absolute values and variation trends in IRI models are different from those in broadband measurements. Based on sferic data similar to those for nighttime, we also measured the day-time D region electron density profile variations in July and August 2005 near Duke University. As expected, the solar radiation is the dominant but not the only determinant source for the daytime D region profile height temporal variations. The observed quiet time heights showed close correlations with solar zenith angle changes but unexpected spatial variations not linked to the solar zenith angle were also observed on some days, with 15% of days exhibiting regional differences larger than 0.5 km. During the solar flare, the induced height change was approximately proportional to the logarithm of the X-ray fluxes. During the rising and decaying phases of the solar flare, the height changes correlated more consistently with the short (wavelength 0.5--4 A), rather than the long (wavelength 1--8 A) X-ray flux changes. The daytime profile sharpness during morning, noontime and afternoon periods in three different days and for the solar zenith angle range 20 to 75 degrees was calculated. These broadband measured results were compared to narrowband VLF measurements, IRI models and Faraday rotation base IRI models (called FIRI). The estimated sharpness from all these sources was more consistent when the solar zenith angle was small than when it was large. By applying the nighttime and daytime measurement techniques, we also derived the D region variations during sunrise and sunset periods. The measurements showed that both the electron density profile height and sharpness decrease during the sunrise period while increase during the sunset period.

Mapping the Solar Wind from its Source Region into the Outer Corona

NASA Technical Reports Server (NTRS)

Esser, Ruth

1997-01-01

Knowledge of the radial variation of the plasma conditions in the coronal source region of the solar wind is essential to exploring coronal heating and solar wind acceleration mechanisms. The goal of the proposal was to determine as many plasma parameters in the solar wind acceleration region and beyond as possible by coordinating different observational techniques, such as Interplanetary Scintillation Observations, spectral line intensity observations, polarization brightness measurements and X-ray observations. The inferred plasma parameters were then used to constrain solar wind models.

Variations of Scale Height at F-Region Peak Based on Ionosonde Measurements during Solar Maximum over the Crest of Equatorial Ionization Anomaly Region

PubMed Central

Chuo, Yu-Jung

2014-01-01

Scale height is an important parameter in characterizing the shape of the ionosphere and its physical processes. In this study, we attempt to examine and discuss the variation of scale height, H m, around the F-layer peak height during high solar activity at the northern crest of the equatorial ionization anomaly (EIA) region. H m exhibits day-to-day variation and seasonal variation, with a greater average daily variation during daytime in summer. Furthermore, the diurnal variation of H m exhibits an abnormal peak at presunrise during all the seasons, particularly in winter. This increase is also observed in the F2-layer peak height for the same duration with an upward movement associated with thermospheric wind toward the equator; this upward movement increases the N2/O ratio and H m, but it causes a decrease in the F2-layer maximum critical frequency during the presunrise period. PMID:25162048

Faraday rotation measure variations in the Cygnus region and the spectrum of interstellar plasma turbulence

NASA Technical Reports Server (NTRS)

Lazio, T. Joseph; Spangler, Steven R.; Cordes, James M.

1990-01-01

Linear polarization observations were made of eight double-lobed radio galaxies viewed through the galactic plane in the Cygnus region. These observations have been used to determine intra- and intersource rotation measure differences; in some cases, unambiguous rotation measures have been extracted. The rotation measures are dominated by foreground magnetoionic material. The differences in rotation measure between pairs of sources correlate with angular separation for separations from 10 arcsec to 1.5 deg. These rotation measure fluctuations are consistent with a model in which the electron density varies on roughly 0.1-200 pc scales. The amplitudes of these variations are, in turn, consistent with those electron density variations that cause diffractive interstellar scattering on scales less than 10 to the 11th cm.

Long-term tropospheric and lower stratospheric ozone variations from ozonesonde observations

NASA Technical Reports Server (NTRS)

London, J.; Liu, S. C.

1992-01-01

An analysis is presented of the long-term mean pressure-latitude seasonal distribution of tropospheric and lower stratospheric ozone for the four seasons covering, in part, over 20 years of ozonesonde data. The observed patterns show minimum ozone mixing ratios in the equatorial and tropical troposphere except in regions where net photochemical production is dominant. In the middle and upper troposphere, and low stratosphere to 50 mb, ozone increases from the tropics to subpolar latitudes of both hemispheres. In mid stratosphere, the ozone mixing ratio is a maximum over the tropics. The observed vertical ozone gradient is small in the troposphere but increases rapidly above the tropopause. The amplitude of the annual variation increases from a minimum in the tropics to a maximum in polar regions. Also, the amplitude increases with height at all latitudes up to about 30 mb where the phase of the annual variation changes abruptly. The phase of the annual variation is during spring in the boundary layer, summer in mid troposphere, and spring in the upper troposhere and lower stratosphere.

Are Observed Variations of Topography of The '660' Influenced By Lateral Variations of An Underlying Interface ?

NASA Astrophysics Data System (ADS)

Castillo, J.; Mocquet, A.; Vacher, P.; Sotin, C.

Most global studies of lateral variations of topography of the '660' have been per- formed so far with long-period data. This presentation assess the seismic signature of this region when studied with broadband data in the frequency range 0.1-1 Hz. When sampled with P-to-s converted phases, this region shows a complex pattern, associat- ing 3 interfaces at the average depths of 600, 650 and 715 km. First results indicate that lateral topography variations of the '650' fit previous observations by long-period data (Gu et al., 1998), except in some subduction zones, especially in East Asia, where vari- ation trends appear to behave in an opposite way. In such regions, better correlations are found with the behaviour of the '715'. We propose that the seismic signature of long-period waves generated at the bottom of the transition zone may be influenced by both interfaces. Because of the lateral variations of their thickness and velocity jump as a function of thermal context, the signature of one interface could prevail against the other. The transformation of garnet into perovskite, and dissociation of ringwood- ite are tested as possible candidates for the '715' and '650', respectively (Vacher et al., 1998), using available thermoelastic data. Synthetic modelling of converted phases on the velocity profiles computed in different thermal contexts can explain our broadband observations. References : Gu et al., EPSL, 157, 57-67, 1998 ; Vacher et al., PEPI, 106, 275-298, 1998.

Regional deep hyperthermia: impact of observer variability in CT-based manual tissue segmentation on simulated temperature distribution

NASA Astrophysics Data System (ADS)

Aklan, Bassim; Hartmann, Josefin; Zink, Diana; Siavooshhaghighi, Hadi; Merten, Ricarda; Putz, Florian; Ott, Oliver; Fietkau, Rainer; Bert, Christoph

2017-06-01

The aim of this study was to systematically investigate the influence of the inter- and intra-observer segmentation variation of tumors and organs at risk on the simulated temperature coverage of the target. CT scans of six patients with tumors in the pelvic region acquired for radiotherapy treatment planning were used for hyperthermia treatment planning. To study the effect of inter-observer variation, three observers manually segmented in the CT images of each patient the following structures: fat, muscle, bone and the bladder. The gross tumor volumes (GTV) were contoured by three radiation oncology residents and used as the hyperthermia target volumes. For intra-observer variation, one of the observers of each group contoured the structures of each patient three times with a time span of one week between the segmentations. Moreover, the impact of segmentation variations in organs at risk (OARs) between the three inter-observers was investigated on simulated temperature distributions using only one GTV. The spatial overlap between individual segmentations was assessed by the Dice similarity coefficient (DSC) and the mean surface distance (MSD). Additionally, the temperatures T90/T10 delivered to 90%/10% of the GTV, respectively, were assessed for each observer combination. The results of the segmentation similarity evaluation showed that the DSC of the inter-observer variation of fat, muscle, the bladder, bone and the target was 0.68  ±  0.12, 0.88  ±  0.05, 0.73  ±  0.14, 0.91  ±  0.04 and 0.64  ±  0.11, respectively. Similar results were found for the intra-observer variation. The MSD results were similar to the DSCs for both observer variations. A statistically significant difference (p  <  0.05) was found for T90 and T10 in the predicted target temperature due to the observer variability. The conclusion is that intra- and inter-observer variations have a significant impact on the temperature coverage of the target. Furthermore, OARs, such as bone and the bladder, may essentially influence the homogeneity of the simulated target temperature distribution.

Identifying water mass depletion in Northern Iraq observed by GRACE

NASA Astrophysics Data System (ADS)

Mulder, Gert; Olsthoorn, Theo; Al-Manmi, Diary; Schrama, Ernst; Smidt, Ebel

2014-05-01

Observations acquired by Gravity Recovery And Climate Experiment (GRACE) mission indicates a mass loss of 31±3 km3 or 130±14 mm in Northern Iraq between 2006 and 2009. This data is used as an independent validation of a hydrologic model of the region including lake mass variations. We developed a rainfall-runoff model for five tributaries of the Tigris River, based on local geology and climate conditions. Model inputs are precipitation data from Tropical Rainfall Measurement Mission (TRMM) observations, and potential evaporation from GLDAS parameters. Our model includes an extensive network of karstified aquifers that causes large natural groundwater variations in this region. Observed river discharges have been used to calibrate our model. In order to get the total mass variations, we correct for lake mass variations derived from Moderate Resolution Imaging Spectroradiometer (MODIS) data in combination with satellite altimetry and some in-situ data. Our rainfall-runoff model confirms that Northern Iraq suffered a drought between 2006 and 2009 and is consistent with the mass loss observed by GRACE in that period. Also, GRACE picks up the annual cycle predicted by the rainfall-runoff model. The total mass depletion seen by GRACE between 2006 and 2009 is 130±14 mm, which is mainly explained by a lake mass depletion of 74±4 mm and a natural groundwater depletion of approximately 50 mm. Our findings indicate that man-made groundwater extraction has a minor influence in this region while depletion of lake mass and geology play a key role.

Investigation of the solar UV/EUV heating effect on the Jovian radiation belt by GMRT-IRTF observation

NASA Astrophysics Data System (ADS)

Kita, H.; Misawa, H.; Bhardwaj, A.; Tsuchiya, F.; Tao, C.; Uno, T.; Kondo, T.; Morioka, A.

2012-12-01

Jupiter's synchrotron radiation (JSR) is the emission from relativistic electrons, and it is the most effective probe for remote sensing of Jupiter's radiation belt from the Earth. Recent intensive observations of JSR revealed short term variations of JSR with the time scale of days to weeks. Brice and McDonough (1973) proposed a scenario for the short term variations; i.e, the solar UV/EUV heating for Jupiter's upper atmosphere causes enhancement of total flux density. The purpose of this study is to investigate whether sufficient solar UV/EUV heating in Jupiter's upper atmosphere can actually causes variation in the JSR total flux and brightness distribution. Previous JSR observations using the Giant Metrewave Radio Telescope (GMRT) suggested important characteristics of short term variations; relatively low energy particles are accelerated by some acceleration processes which might be driven by solar UV/EUV heating and/or Jupiter's own magnetic activities. In order to evaluate the effect of solar UV/EUV heating on JSR variations, we made coordinated observations using the GMRT and NASA Infra-Red Telescope Facility (IRTF). By using IRTF, we can estimate the temperature of Jupiter's upper atmosphere from spectroscopic observation of H_3^+ infrared emission. Hence, we can evaluate the relationship between variations in Jupiter's upper atmosphere initiated by the solar UV/EUV heating and its linkage with the JSR. The GMRT observations were made during Nov. 6-17, 2011 at the frequency of 235/610MHz. The H_3^+ 3.953 micron line was observed using the IRTF during Nov. 7-12, 2011. During the observation period, the solar UV/EUV flux variations expected on Jupiter showed monotonic increase. A preliminary analysis of GMRT 610MHz band showed a radio flux variation similar to that in the solar UV/EUV. Radio images showed that the emission intensity increased at the outer region and the position of equatorial peak emission moved in the outward direction. If radial diffusion increases globally by the solar UV/EUV heating, it is expected that the peak intensity would increase and the peak position move inwards. However, our results are not consistent with the global enhancement of radial diffusion. In addition to that, the equatorial H_3^+ emission indicated that emission intensity decreased from the first day of observation to the last day. It is expected that equatorial temperature of Jupiter's atmosphere decreases during this observation period. Therefore, we propose that radial diffusion increased not globally but only at the outer region around L=2-3 during this period. From this hypothesis, it is expected that enhancement of radial diffusion at the outer region is caused by high latitude temperature enhancement. We discuss possible causes of the short term variations of JSR from the IRTF observation results at high latitude.

Ionosphere of Venus - First observations of day-night variations of the ion composition

NASA Technical Reports Server (NTRS)

Taylor, H. A., Jr.; Brinton, H. C.; Bauer, S. J.; Hartle, R. E.; Cloutier, P. A.; Daniell, R. E., Jr.; Donahue, T. M.

1979-01-01

Preliminary observations of day-night variations in the ion composition of the ionosphere of Venus, obtained by the Pioneer Venus Orbiter ion mass spectrometer experiment, are reported. A remarkable abundance and extent of ionization in the deep regions of the nightside ionosphere was observed, in spite of the long Venus night. A comparison of dayside and nightside ion distributions reveals a nightside composition similar in several respects to that of the dayside, with the ions O(+) and O2(+) forming the nightside F 2 and F 1 regions, respectively, as in the dayside. Important differences include a greater abundance of low-latitude ionization in the nightside, a significant increase of H(+) and NO(+) ions with increasing solar zenith angle, and extreme dynamic variability of the nightside region above 160 km. Ion composition data support the view that the nightside ionosphere can be maintained by the transport of ionization from the dayside.

Genome-wide copy number variation (CNV) detection in Nelore cattle reveals highly frequent variants in genome regions harboring QTLs affecting production traits.

PubMed

da Silva, Joaquim Manoel; Giachetto, Poliana Fernanda; da Silva, Luiz Otávio; Cintra, Leandro Carrijo; Paiva, Samuel Rezende; Yamagishi, Michel Eduardo Beleza; Caetano, Alexandre Rodrigues

2016-06-13

Copy number variations (CNVs) have been shown to account for substantial portions of observed genomic variation and have been associated with qualitative and quantitative traits and the onset of disease in a number of species. Information from high-resolution studies to detect, characterize and estimate population-specific variant frequencies will facilitate the incorporation of CNVs in genomic studies to identify genes affecting traits of importance. Genome-wide CNVs were detected in high-density single nucleotide polymorphism (SNP) genotyping data from 1,717 Nelore (Bos indicus) cattle, and in NGS data from eight key ancestral bulls. A total of 68,007 and 12,786 distinct CNVs were observed, respectively. Cross-comparisons of results obtained for the eight resequenced animals revealed that 92 % of the CNVs were observed in both datasets, while 62 % of all detected CNVs were observed to overlap with previously validated cattle copy number variant regions (CNVRs). Observed CNVs were used for obtaining breed-specific CNV frequencies and identification of CNVRs, which were subsequently used for gene annotation. A total of 688 of the detected CNVRs were observed to overlap with 286 non-redundant QTLs associated with important production traits in cattle. All of 34 CNVs previously reported to be associated with milk production traits in Holsteins were also observed in Nelore cattle. Comparisons of estimated frequencies of these CNVs in the two breeds revealed 14, 13, 6 and 14 regions in high (>20 %), low (<20 %) and divergent (NEL > HOL, NEL < HOL) frequencies, respectively. Obtained results significantly enriched the bovine CNV map and enabled the identification of variants that are potentially associated with traits under selection in Nelore cattle, particularly in genome regions harboring QTLs affecting production traits.

Algal-bacterial co-variation in streams: a cross-stream comparison

Treesearch

Xueqing Gao; Ola A. Olapade; Mark W. Kershner; Laura G. Leff

2004-01-01

Algal-bacterial co-variation has been frequently observed in lentic and marine environments, but the existence of such relationships in lotic ecosystems is not well established. To examine possible co-variation, bacterial number and chlorophyll-a concentration in water and sediments of nine streams from different regions in the USA were examined. In the water, a strong...

CHANGES OF THE SOLAR MERIDIONAL VELOCITY PROFILE DURING CYCLE 23 EXPLAINED BY FLOWS TOWARD THE ACTIVITY BELTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cameron, R. H.; Schuessler, M., E-mail: cameron@mps.mpg.d

The solar meridional flow is an important ingredient in Babcock-Leighton type models of the solar dynamo. Global variations of this flow have been suggested to explain the variations in the amplitudes and lengths of the activity cycles. Recently, cycle-related variations in the amplitude of the P{sup 1}{sub 2} term in the Legendre decomposition of the observed meridional flow have been reported. The result is often interpreted in terms of an overall variation in the flow amplitude during the activity cycle. Using a semi-empirical model based upon the observed distribution of magnetic flux on the solar surface, we show that themore » reported variations of the P{sup 1}{sub 2} term can be explained by the observed localized inflows into the active region belts. No variation of the overall meridional flow amplitude is required.« less

Reduction of observer variation using matched CT-PET for lung cancer delineation: A three-dimensional analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Steenbakkers, Roel; Duppen, Joop C.; Fitton, Isabelle

2006-02-01

Purpose: Target delineation using only CT information introduces large geometric uncertainties in radiotherapy for lung cancer. Therefore, a reduction of the delineation variability is needed. The impact of including a matched CT scan with 2-[{sup 18}F]fluoro-2-deoxy-D-glucose positron emission tomography (FDG-PET) and adaptation of the delineation protocol and software on target delineation in lung cancer was evaluated in an extensive multi-institutional setting and compared with the delineations using CT only. Methods and Materials: The study was separated into two phases. For the first phase, 11 radiation oncologists (observers) delineated the gross tumor volume (GTV), including the pathologic lymph nodes of 22more » lung cancer patients (Stages I-IIIB) on CT only. For the second phase (1 year later), the same radiation oncologists delineated the GTV of the same 22 patients on a matched CT-FDG-PET scan using an adapted delineation protocol and software (according to the results of the first phase). All delineated volumes were analyzed in detail. The observer variation was computed in three dimensions by measuring the distance between the median GTV surface and each individual GTV. The variation in distance of all radiation oncologists was expressed as a standard deviation. The observer variation was evaluated for anatomic regions (lung, mediastinum, chest wall, atelectasis, and lymph nodes) and interpretation regions (agreement and disagreement; i.e., >80% vs. <80% of the radiation oncologists delineated the same structure, respectively). All radiation oncologist-computer interactions were recorded and analyzed with a tool called 'Big Brother.' Results: The overall three-dimensional observer variation was reduced from 1.0 cm (SD) for the first phase (CT only) to 0.4 cm (SD) for the second phase (matched CT-FDG-PET). The largest reduction in the observer variation was seen in the atelectasis region (SD 1.9 cm reduced to 0.5 cm). The mean ratio between the common and encompassing volume was 0.17 and 0.29 for the first and second phases, respectively. For the first phase, the common volume was 0 in 4 patients (i.e., no common point for all GTVs). In the second phase, the common volume was always >0. For all anatomic regions, the interpretation differences among the radiation oncologists were reduced. The amount of disagreement was 45% and 18% for the first and second phase, respectively. Furthermore, the mean delineation time (12 vs. 16 min, p < 0.001) and mean number of corrections (25 vs. 39, p < 0.001) were reduced in the second phase compared with the first phase. Conclusion: For high-precision radiotherapy, the delineation of lung target volumes using only CT introduces too great a variability among radiation oncologists. Implementing matched CT-FDG-PET and adapted delineation protocol and software reduced observer variation in lung cancer delineation significantly with respect to CT only. However, the remaining observer variation was still large compared with other geometric uncertainties (setup variation and organ motion)« less

Tandemly repeated sequences in mtDNA control region of whitefish, Coregonus lavaretus.

PubMed

Brzuzan, P

2000-06-01

Length variation of the mitochondrial DNA control region was observed with PCR amplification of a sample of 138 whitefish (Coregonus lavaretus). Nucleotide sequences of representative PCR products showed that the variation was due to the presence of an approximately 100-bp motif tandemly repeated two, three, or five times in the region between the conserved sequence block-3 (CSB-3) and the gene for phenylalanine tRNA. This is the first report on the tandem array composed of long repeat units in mitochondrial DNA of salmonids.

Boundary-layer cumulus over land: Some observations and conceptual models

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stull, R.B.

1993-09-01

Starting in 1980, the Boundary Layer Research Team at the University of Wisconsin has been systematically studying the formation and evolution of nonprecipitating boundary-layer cumulus clouds (BLCu) in regions of fair weather (anticyclones) over land (Stull, 1980). Our approach is to quantify the average statistical characteristics of the surface, thermals, boundary layer, and clouds over horizontal regions of roughly 20 km in diameter. Within such a region over land, there is typically quite a variation in land use, and associated variations in surface albedo and moisture.

SOAP 2.0: A Tool to Estimate the Photometric and Radial Velocity Variations Induced by Stellar Spots and Plages

NASA Astrophysics Data System (ADS)

Dumusque, X.; Boisse, I.; Santos, N. C.

2014-12-01

This paper presents SOAP 2.0, a new version of the Spot Oscillation And Planet (SOAP) code that estimates in a simple way the photometric and radial velocity (RV) variations induced by active regions. The inhibition of the convective blueshift (CB) inside active regions is considered, as well as the limb brightening effect of plages, a quadratic limb darkening law, and a realistic spot and plage contrast ratio. SOAP 2.0 shows that the activity-induced variation of plages is dominated by the inhibition of the CB effect. For spots, this effect becomes significant only for slow rotators. In addition, in the case of a major active region dominating the activity-induced signal, the ratio between the FWHM and the RV peak-to-peak amplitudes of the cross correlation function can be used to infer the type of active region responsible for the signal for stars with v sin i <=8 km s-1. A ratio smaller than three implies a spot, while a larger ratio implies a plage. Using the observation of HD 189733, we show that SOAP 2.0 manages to reproduce the activity variation as well as previous simulations when a spot is dominating the activity-induced variation. In addition, SOAP 2.0 also reproduces the activity variation induced by a plage on the slowly rotating star α Cen B, which is not possible using previous simulations. Following these results, SOAP 2.0 can be used to estimate the signal induced by spots and plages, but also to correct for it when a major active region is dominating the RV variation. . The work in this paper is based on observations made with the MOST satellite, the HARPS instrument on the ESO 3.6 m telescope at La Silla Observatory (Chile), and the SOPHIE instrument at the Observatoire de Haute Provence (France).

Living in isolation - population structure, reproduction, and genetic variation of the endangered plant species Dianthus gratianopolitanus (Cheddar pink).

PubMed

Putz, Christina M; Schmid, Christoph; Reisch, Christoph

2015-09-01

The endangered plant species Dianthus gratianopolitanus exhibits a highly fragmented distribution range comprising many isolated populations. Based upon this pattern of distribution, we selected a study region in Switzerland with a lower magnitude of isolation (Swiss Jura) and another study region in Germany with a higher degree of isolation (Franconian Jura). In each region, we chose ten populations to analyze population structure, reproduction, and genetic variation in a comparative approach. Therefore, we determined population density, cushion size, and cushion density to analyze population structure, investigated reproductive traits, including number of flowers, capsules, and germination rate, and analyzed amplified fragment length polymorphisms to study genetic variation. Population and cushion density were credibly higher in German than in Swiss populations, whereas reproductive traits and genetic variation within populations were similar in both study regions. However, genetic variation among populations and isolation by distance were stronger in Germany than in Switzerland. Generally, cushion size and density as well as flower and capsule production increased with population size and density, whereas genetic variation decreased with population density. In contrast to our assumptions, we observed denser populations and cushions in the region with the higher magnitude of isolation, whereas reproductive traits and genetic variation within populations were comparable in both regions. This corroborates the assumption that stronger isolation must not necessarily result in the loss of fitness and genetic variation. Furthermore, it supports our conclusion that the protection of strongly isolated populations contributes essentially to the conservation of a species' full evolutionary potential.

The origin of large local uplift in extensional regions

USGS Publications Warehouse

King, G.; Ellis, M.

1990-01-01

Large localized uplift is commonly observed in continental regions undergoing extension. These observations can be modelled by planar, high-angle normal faulting of an elastic upper crust overlying an inviscid lower crust. Isostasy provides the necessary driving force. The model quantifies the role of flexural rigidity, density variations in the crust, and erosion and deposition of sediment.

Insights into the diurnal cycle of global Earth outgoing radiation using a numerical weather prediction model

NASA Astrophysics Data System (ADS)

Gristey, Jake J.; Chiu, J. Christine; Gurney, Robert J.; Morcrette, Cyril J.; Hill, Peter G.; Russell, Jacqueline E.; Brindley, Helen E.

2018-04-01

A globally complete, high temporal resolution and multiple-variable approach is employed to analyse the diurnal cycle of Earth's outgoing energy flows. This is made possible via the use of Met Office model output for September 2010 that is assessed alongside regional satellite observations throughout. Principal component analysis applied to the long-wave component of modelled outgoing radiation reveals dominant diurnal patterns related to land surface heating and convective cloud development, respectively explaining 68.5 and 16.0 % of the variance at the global scale. The total variance explained by these first two patterns is markedly less than previous regional estimates from observations, and this analysis suggests that around half of the difference relates to the lack of global coverage in the observations. The first pattern is strongly and simultaneously coupled to the land surface temperature diurnal variations. The second pattern is strongly coupled to the cloud water content and height diurnal variations, but lags the cloud variations by several hours. We suggest that the mechanism controlling the delay is a moistening of the upper troposphere due to the evaporation of anvil cloud. The short-wave component of modelled outgoing radiation, analysed in terms of albedo, exhibits a very dominant pattern explaining 88.4 % of the variance that is related to the angle of incoming solar radiation, and a second pattern explaining 6.7 % of the variance that is related to compensating effects from convective cloud development and marine stratocumulus cloud dissipation. Similar patterns are found in regional satellite observations, but with slightly different timings due to known model biases. The first pattern is controlled by changes in surface and cloud albedo, and Rayleigh and aerosol scattering. The second pattern is strongly coupled to the diurnal variations in both cloud water content and height in convective regions but only cloud water content in marine stratocumulus regions, with substantially shorter lag times compared with the long-wave counterpart. This indicates that the short-wave radiation response to diurnal cloud development and dissipation is more rapid, which is found to be robust in the regional satellite observations. These global, diurnal radiation patterns and their coupling with other geophysical variables demonstrate the process-level understanding that can be gained using this approach and highlight a need for global, diurnal observing systems for Earth outgoing radiation in the future.

Energy-dependent intensity variation of the persistent X-ray emission of magnetars observed with Suzaku

NASA Astrophysics Data System (ADS)

Nakagawa, Yujin; Ebisawa, Ken; Enoto, Teruaki

2018-03-01

The emission mechanism of magnetars is still controversial even though various observational and theoretical studies have been made. In order to investigate mechanisms of both the persistent X-ray emission and the burst emission of the magnetars, we propose a model in which the persistent X-ray emission consists of numerous micro-bursts of various sizes. If this model is correct, root mean square (rms) intensity variations of the persistent emission would exceed the values expected from the Poisson distribution. Using Suzaku archive data of 11 magnetars (22 observations), the rms intensity variations were calculated from 0.2 keV to 70 keV. As a result, we found significant excess rms intensity variations from all 11 magnetars. We suppose that numerous micro-bursts constituting the persistent X-ray emission cause the observed variations, suggesting that the persistent X-ray emission and the burst emission have identical emission mechanisms. In addition, we found that the rms intensity variations clearly increase toward higher energy bands for four magnetars (six observations). The energy-dependent rms intensity variations imply that the soft thermal component and the hard X-ray component are emitted from different regions far apart from each other.

Genetic characterization of Kenai brown bears (Ursus arctos): Microsatellite and mitochondrial DNA control region variation in brown bears of the Kenai Peninsula, south central Alaska

USGS Publications Warehouse

Jackson, J.V.; Talbot, S.L.; Farley, S.

2008-01-01

We collected data from 20 biparentally inherited microsatellite loci, and nucleotide sequence from the maternally inherited mitochondrial DNA (mtDNA) control region, to determine levels of genetic variation of the brown bears (Ursus arctos L., 1758) of the Kenai Peninsula, south central Alaska. Nuclear genetic variation was similar to that observed in other Alaskan peninsular populations. We detected no significant inbreeding and found no evidence of population substructuring on the Kenai Peninsula. We observed a genetic signature of a bottleneck under the infinite alleles model (IAM), but not under the stepwise mutation model (SMM) or the two-phase model (TPM) of microsatellite mutation. Kenai brown bears have lower levels of mtDNA haplotypic diversity relative to most other brown bear populations in Alaska. ?? 2008 NRC.

Seasonal dynamics of VLF signals amplitude Novosibirsk radio station and mesopause region temperature in 2009-2015

NASA Astrophysics Data System (ADS)

Kozlov, V. I.; Korsakov, A. A.; Ammosov, P. P.; Ammosova, A. M.; Gavrilyeva, G. A.; Koltovskoi, I. I.

2017-11-01

Dynamics of seasonal variations in the amplitude of the VLF radio signal received in Yakutsk from the navigation station near Novosibirsk and the radiation intensity in the wavelength range from 835 to 853 nm, where the P-branches of the OH band (6-2) are located, is present. The radiation variations give information about mesopause region measured at the Maimaga station (130 km from Yakutsk). Observation period from 2009 to 2015 covers period with minimum and maximum solar activity (solar flux F10.7). In the seasonal dynamics of the VLF amplitude signals and the mesopause temperature are observed annual, semiannual and third-annual variations, increasing during nighttime for VLF signals. The mesopause temperature and the VLF signal increase with increasing solar flux F10.7 in winter.

SOLAR VARIABILITY FROM 240 TO 1750 nm IN TERMS OF FACULAE BRIGHTENING AND SUNSPOT DARKENING FROM SCIAMACHY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pagaran, J.; Weber, M.; Burrows, J.

2009-08-01

The change of spectral decomposition of the total radiative output on various timescales of solar magnetic activity is of large interest to terrestrial and solar-stellar atmosphere studies. Starting in 2002, SCIAMACHY was the first satellite instrument to observe daily solar spectral irradiance (SSI) continuously from 230 nm (UV) to 1750 nm (near-infrared; near-IR). In order to address the question of how much UV, visible (vis), and IR spectral regions change on 27 day and 11 year timescales, we parameterize short-term SSI variations in terms of faculae brightening (Mg II index) and sunspot darkening (photometric sunspot index) proxies. Although spectral variationsmore » above 300 nm are below 1% and, therefore, well below the accuracy of absolute radiometric calibration, relative accuracy for short-term changes is shown to be in the per mill range. This enables us to derive short-term spectral irradiance variations from the UV to the near-IR. During Halloween solar storm in 2003 with a record high sunspot area, we observe a reduction of 0.3% in the near-IR to 0.5% in the vis and near-UV. This is consistent with a 0.4% reduction in total solar irradiance (TSI). Over an entire 11 year solar cycle, SSI variability covering simultaneously the UV, vis, and IR spectral regions have not been directly observed so far. Using variations of solar proxies over solar cycle 23, solar cycle spectral variations have been estimated using scaling factors that best matched short-term variations of SCIAMACHY. In the 300-400 nm region, which strongly contributes to TSI solar cycle change, a contribution of 34% is derived from SCIAMACHY observations, which is lower than the reported values from SUSIM satellite data and the empirical SATIRE model. The total UV contribution (below 400 nm) to TSI solar cycle variations is estimated to be 55%.« less

Allozyme variation of Port-Orford-Cedar (Chamaecyparis lawsoniana): implications for genetic conservation

Treesearch

Constance I. Millar; Kimberly A. Marshall

1991-01-01

Variation at 32 allozyme loci in nine disjunct populations of Part-Orford-cedar (POC) from the California floristic region was measured to estimate the amount and pattern of genetic variability in natural stands. Variation in electrophoretically detectable loci was moderately high, with mean number of alleles per locus = 1.9, 64.9% polymorphic loci, and observed...

Regional Ocean Data Assimilation

NASA Astrophysics Data System (ADS)

Edwards, Christopher A.; Moore, Andrew M.; Hoteit, Ibrahim; Cornuelle, Bruce D.

2015-01-01

This article reviews the past 15 years of developments in regional ocean data assimilation. A variety of scientific, management, and safety-related objectives motivate marine scientists to characterize many ocean environments, including coastal regions. As in weather prediction, the accurate representation of physical, chemical, and/or biological properties in the ocean is challenging. Models and observations alone provide imperfect representations of the ocean state, but together they can offer improved estimates. Variational and sequential methods are among the most widely used in regional ocean systems, and there have been exciting recent advances in ensemble and four-dimensional variational approaches. These techniques are increasingly being tested and adapted for biogeochemical applications.

Regional ocean data assimilation.

PubMed

Edwards, Christopher A; Moore, Andrew M; Hoteit, Ibrahim; Cornuelle, Bruce D

2015-01-01

This article reviews the past 15 years of developments in regional ocean data assimilation. A variety of scientific, management, and safety-related objectives motivate marine scientists to characterize many ocean environments, including coastal regions. As in weather prediction, the accurate representation of physical, chemical, and/or biological properties in the ocean is challenging. Models and observations alone provide imperfect representations of the ocean state, but together they can offer improved estimates. Variational and sequential methods are among the most widely used in regional ocean systems, and there have been exciting recent advances in ensemble and four-dimensional variational approaches. These techniques are increasingly being tested and adapted for biogeochemical applications.

On the Regulation of the Pacific Warm Pool Temperature

NASA Technical Reports Server (NTRS)

Chou, Ming-Dah; Chou, Sue-Hsien; Chan, Pui-King; Lau, William K. M. (Technical Monitor)

2002-01-01

In the tropical western Pacific, regions of the highest sea surface temperature (SST) and the largest cloud cover are found to have the largest surface heating, primarily due to the weak evaporative cooling associated with weak winds. This situation is in variance with the suggestions that the temperature in the Pacific warm pool is regulated either by the reduced solar heating due to an enhanced cloudiness or by the enhanced evaporative cooling due to an elevated SST. It is clear that an enhanced surface heating in an enhanced convection region is not sustainable and must be interrupted by variations in large-scale atmospheric circulation. As the deep convective regions shift away from regions of high SST due primarily to seasonal variation and secondarily to interannual variation of the large-scale atmospheric and oceanic circulation, both trade wind and evaporative cooling in the high SST region increase, leading to a reduction in SST. We conclude that the evaporative cooling associated with the seasonal and interannual variations of trade winds in the primary factor that prevent the warm pool SST from increasing to a value much higher than what is observed.

Seasonal and geographic variations in the incidence of asthma exacerbations in the United States.

PubMed

Gerhardsson de Verdier, M; Gustafson, Per; McCrae, Christopher; Edsbäcker, Staffan; Johnston, Neil

2017-10-01

Exacerbations drive the burden of asthma and lead to significant morbidity and consumption of health care resources. Many prior studies of the epidemiology of asthma exacerbations have relied upon data from hospital care. The objective of this study was to determine US patterns of geographic and seasonal variations of asthma exacerbations being defined as asthma episodes requiring hospital care and/or a prescription for oral steroid. The study was a retrospective observational cohort study using administrative claims data for insured individuals from the HealthCore Integrated Research Database, including around 43 million members in the United States. Analyses examined 3 age groups, 6-17, 18-64, and ≥65 years and four US regions, Northeast, Southeast, Central, and Western. Monthly rates of asthma exacerbations showed the greatest variation over the year in children, less so in adults and in the elderly. Clinically important differences in rates of asthma exacerbation were observed between regions with the Western Region having the lowest in all three age groups followed by the Northeast, Central, and Southeast regions. Peaks in children occurred in the early fall following troughs in the summer months, and peaks at year-end occurred in adults, particularly in those over 65 years. There is a striking seasonal variation in asthma exacerbations in the United States. Substantial differences between regions of the United States in asthma exacerbation rates cannot readily be explained and invite further investigation.

The effect of regional sea level atmospheric pressure on sea level variations at globally distributed tide gauge stations with long records

NASA Astrophysics Data System (ADS)

Iz, H. Bâki

2018-05-01

This study provides additional information about the impact of atmospheric pressure on sea level variations. The observed regularity in sea level atmospheric pressure depends mainly on the latitude and verified to be dominantly random closer to the equator. It was demonstrated that almost all the annual and semiannual sea level variations at 27 globally distributed tide gauge stations can be attributed to the regional/local atmospheric forcing as an inverted barometric effect. Statistically significant non-linearities were detected in the regional atmospheric pressure series, which in turn impacted other sea level variations as compounders in tandem with the lunar nodal forcing, generating lunar sub-harmonics with multidecadal periods. It was shown that random component of regional atmospheric pressure tends to cluster at monthly intervals. The clusters are likely to be caused by the intraannual seasonal atmospheric temperature changes,which may also act as random beats in generating sub-harmonics observed in sea level changes as another mechanism. This study also affirmed that there are no statistically significant secular trends in the progression of regional atmospheric pressures, hence there was no contribution to the sea level trends during the 20th century by the atmospheric pressure.Meanwhile, the estimated nonuniform scale factors of the inverted barometer effects suggest that the sea level atmospheric pressure will bias the sea level trends inferred from satellite altimetry measurements if their impact is accounted for as corrections without proper scaling.

A Variational Inverse Model Study of Amazonian Methane Emissions including Observations from the AMAZONICA campaign

NASA Astrophysics Data System (ADS)

Wilson, C. J.; Gloor, M.; Chipperfield, M.; Miller, J. B.; Gatti, L.

2013-12-01

Methane (CH4) is a greenhouse gas which is emitted from a range of anthropogenic and natural sources, and since the industrial revolution its mean atmospheric concentration has climbed dramatically, reaching values unprecedented in at least the past 650,000 years. CH4 produces a relatively high radiative forcing effect upon the Earth's climate, and its atmospheric lifetime of approximately 10 years makes it a more appealing target for the mitigation of climate change over short timescales than long-lived greenhouse gases such as carbon dioxide. However, the spatial and temporal variation of CH4 emissions are still not well understood, though in recent years a number of top-down and bottom-up studies have attempted to construct improved emission budgets. Some top-down studies may suffer from poor observational coverage in tropical regions, however, especially in the planetary boundary layer, where the atmosphere is highly sensitive to emissions. For example, although satellite observations often take a large volume of measurements in tropical regions, these retrievals are not usually sensitive to concentrations at the planet's surface. Methane emissions from Amazon region, in particular, are often poorly constrained. Since emissions form this region, coming mainly from wetland and biomass burning sources, are thought to be relatively high, additional observations in this region would greatly help to constrain the geographical distribution of the global CH4 emission budget. In order to provide such measurements, the AMAZONICA project began to take regular flask measurements of CH4 and other trace gases from aircraft over four Amazonian sites from the year 2010 onwards. We first present a forward modelling study of these observations of Amazonian methane for the year 2010 using the TOMCAT Chemical Transport Model. The model is used to attribute variations at each site to a source type and region, and also to assess the ability of our current CH4 flux estimates to reproduce these observations. Although there is mostly good agreement between the modelled and observed CH4, we find discrepancies between the two at one site in the east of the region, indicating possible errors surrounding the surface fluxes of methane affecting this site. We also present the results of an inverse modelling study of methane emissions for the year 2010, using INVICAT, which is a new variational inverse model based upon TOMCAT. This study represents the first use of the INVICAT scheme to constrain emissions of an atmospheric trace gas. Similarly to many previous inverse model studies, this top-down study assimilates ground-based flask observations of CH4 from the NOAA ground network. However, in order to provide additional constraints of CH4 emissions in the Amazon region, flask observations taken as part of the AMAZONICA campaign are also assimilated. The results of this inversion provide improved Amazonian and global CH4 emission budgets for the year 2010.

Asian couples in negotiation: a mixed-method observational study of cultural variations across five Asian regions.

PubMed

Lee, Wai-Yung; Nakamura, Shin-Ichi; Chung, Moon Ja; Chun, Young Ju; Fu, Meng; Liang, Shu-Chuan; Liu, Cui-Lian

2013-09-01

The purpose of this study was to explore variations in how contemporary couples from five different Asian regions negotiate disagreements. Video recordings of 50 couples (10 each from Japan, Korea, Mainland China, Taiwan, and Hong Kong) discussing unresolved disagreements provided raw data for quantitative and qualitative analyses. First, teams of coders from each region used a common protocol to make quantitative ratings of content themes and interaction patterns for couples from their own region. An interregional panel of investigators then performed in-depth qualitative reviews for half of these cases, noting cultural differences not only in observed patterns of couple behavior but also in their own perceptions of these patterns. Both quantitative and qualitative analyses revealed clear regional differences on dimensions such as overt negativity, demand-withdraw interaction, and collaboration. The qualitative results also provided a richer, more nuanced view of other (e.g., gender-linked) conflict management patterns that the quantitative analyses did not capture. Inconsistencies between qualitative and quantitative data and between the qualitative observations of investigators from different regions were most pronounced for couples from Korea and Japan, whose conflict styles were subtler and less direct than those of couples from the other regions. © FPI, Inc.

Origin of refractive index fluctuations in the mesosphere as opposed to the stratosphere and troposphere

NASA Technical Reports Server (NTRS)

Rottger, J.

1983-01-01

Mesospheric echoes are strongly influenced by the electron density profile of the ionospheric D region. These echoes therefore are only observed during daylight hours or high energy particle precipitation. The turbulence occurs in layers, which often confines the radar echoes to rather thin regions of several 100 m vertical extent, although layers as thick as several kilometers are also observed. Evaluable echoes are not observed through the entire altitude region of the mesosphere for the given power aperture product. The echoes indicate temporal variation.

Seasonal Variations of Atmospheric CO2 over Fire Affected Regions Based on GOSAT Observations

NASA Astrophysics Data System (ADS)

Shi, Y.; Matsunaga, T.

2016-12-01

Abstract: The carbon dioxide (CO2) emissions released from biomass burning significantly affect the temporal variations of atmospheric CO2 concentrations. Based on a long-term (July 2009-June 2015) retrieved datasets by the Greenhouse Gases Observing Satellite (GOSAT), the seasonal cycle and interannual variations of column-averaged volume mixing ratios of atmospheric carbon dioxide (XCO2) in four fire affected continental regions were investigated. The results showed Northern Africa had the largest seasonal variations after removing its regional long-term trend of XCO2 with peak-to-peak amplitude of 6.2 ppm within the year, higher than central South America (2.4 ppm), Southern Africa (3.8 ppm) and Australia (1.7 ppm). The detrended regional XCO2 was found to be positively correlated with the fire CO2 emissions during fire activity period and negatively correlated with vegetation photosynthesis activity with different seasonal variabilities. Northern Africa recorded the largest change of seasonal variations of detrended XCO2 with a total of 12.8 ppm during fire seasons, higher than central South America, Southern Africa and Australia with 5.4 ppm, 6.7 ppm and 2.2 ppm, respectively. During fire episode, the positive detrended XCO2 was noticed during June-November in central South America, December-June in Northern Africa, May-November in Southern Africa. The Pearson correlation coefficients between the variations of detrended XCO2 and fire CO2 emissions from GFED4 (Global Fire Emissions Database v4) achieved best correlations in Southern Africa (R=0.77, p<0.05). Meanwhile, Southern Africa also experienced a significant negative relationship between the variations of detrended XCO2 and vegetation activity (R=-0.84, p<0.05). This study revealed that fire CO2 emissions and vegetation activity contributed greatly to the seasonal variations of GOSAT XCO2 dataset.

Atmospheric diurnal and semi-diurnal variations observed with GPS radio occultation soundings

NASA Astrophysics Data System (ADS)

Xie, F.; Wu, D. L.; Ao, C. O.; Mannucci, A. J.

2009-11-01

Diurnal and semi-diurnal variations, driven by solar forcing, are two fundamental modes in the Earth's weather and climate system. Radio occultation (RO) measurements from the six COSMIC satellites (Constellation Observing System for Meteorology Ionosphere and Climate) provide rather uniform global coverage with high vertical resolution, all-weather and diurnal sampling capability. This paper analyzes the diurnal and semi-diurnal variations of both temperature and refractivity from two-year (2007-2008) COSMIC RO measurements in the troposphere and stratosphere. The RO observations reveal both propagating and trapped vertical structures of diurnal and semi-diurnal variations, including transition regions near the tropopause where data with high vertical resolution are critical. In the tropics the diurnal amplitude in refractivity decreases with altitude from a local maximum in the planetary boundary layer and reaches the minimum around 14 km and then further increase amplitude in the stratosphere. The upward propagating component of the migrating diurnal tides in the tropics is clearly captured by the GPS RO measurements, which show a downward progression in phase from upper troposphere to the stratopause with a vertical wavelength of about 25 km. Below 500 hPa (~5.5 km), seasonal variations of the peak diurnal amplitude in the tropics follow the solor forcing change in latitude, while at 30 km the seasonal pattern reverses with the diurnal amplitude peaking at the opposite side of the equator relative to the solar forcing. Polar regions shows large diurnal variations in the stratosphere with strong seasonal variations and the cause(s) of these variations require further investigations.

Intraspecific Variation among Social Insect Colonies: Persistent Regional and Colony-Level Differences in Fire Ant Foraging Behavior

PubMed Central

Bockoven, Alison A.; Wilder, Shawn M.; Eubanks, Micky D.

2015-01-01

Individuals vary within a species in many ecologically important ways, but the causes and consequences of such variation are often poorly understood. Foraging behavior is among the most profitable and risky activities in which organisms engage and is expected to be under strong selection. Among social insects there is evidence that within-colony variation in traits such as foraging behavior can increase colony fitness, but variation between colonies and the potential consequences of such variation are poorly documented. In this study, we tested natural populations of the red imported fire ant, Solenopsis invicta, for the existence of colony and regional variation in foraging behavior and tested the persistence of this variation over time and across foraging habitats. We also reared single-lineage colonies in standardized environments to explore the contribution of colony lineage. Fire ants from natural populations exhibited significant and persistent colony and regional-level variation in foraging behaviors such as extra-nest activity, exploration, and discovery of and recruitment to resources. Moreover, colony-level variation in extra-nest activity was significantly correlated with colony growth, suggesting that this variation has fitness consequences. Lineage of the colony had a significant effect on extra-nest activity and exploratory activity and explained approximately half of the variation observed in foraging behaviors, suggesting a heritable component to colony-level variation in behavior. PMID:26197456

Hydrological Variations in Australia Recovered by GRACE High-Resolution Mascons Solutions

NASA Technical Reports Server (NTRS)

Carabajal, Claudia C.; Boy, Jean-Paul; Sabaka, Terence J.; Lemoine, Frank G.; Rowlands. David; Luthcke, Scott B.; Brown, M. Y.

2011-01-01

Australia represents a challenging region in which to study hydrological variations as recovered by the GRACE (Gravity Recovery And Climate Experiment) mission data. Much of Australia is characterized by relatively small hydrological signals, with large precipitation gradients between the North and the South. These signals are better recovered using innovative GRACE processing techniques such as high-resolution mascon solutions, which may help overcome the deficiencies in the standard GRACE data processing and filtering methods. We will show the power of using regional and global mas con solutions to recover hydrological variations from 2003 to 2011, as well as the oceanic mass variations in the surrounding regions. We will compare the GRACE signals with state of the art hydrology and ocean general circulation models, precipitation, soil moisture and groundwater data sets. We especially emphasize the gravity signatures observed during the decadal drought in the Murray-Darling river basin and the early 2011 floods in North-Western Australia.

Observational intensity bias associated with illness adjustment: cross sectional analysis of insurance claims

PubMed Central

Staiger, Douglas O; Sharp, Sandra M; Gottlieb, Daniel J; Bevan, Gwyn; McPherson, Klim; Welch, H Gilbert

2013-01-01

Objective To determine the bias associated with frequency of visits by physicians in adjusting for illness, using diagnoses recorded in administrative databases. Setting Claims data from the US Medicare program for services provided in 2007 among 306 US hospital referral regions. Design Cross sectional analysis. Participants 20% sample of fee for service Medicare beneficiaries residing in the United States in 2007 (n=5 153 877). Main outcome measures The effect of illness adjustment on regional mortality and spending rates using standard and visit corrected illness methods for adjustment. The standard method adjusts using comorbidity measures based on diagnoses listed in administrative databases; the modified method corrects these measures for the frequency of visits by physicians. Three conventions for measuring comorbidity are used: the Charlson comorbidity index, Iezzoni chronic conditions, and hierarchical condition categories risk scores. Results The visit corrected Charlson comorbidity index explained more of the variation in age, sex, and race mortality across the 306 hospital referral regions than did the standard index (R2=0.21 v 0.11, P<0.001) and, compared with sex and race adjusted mortality, reduced regional variation, whereas adjustment using the standard Charlson comorbidity index increased it. Although visit corrected and age, sex, and race adjusted mortality rates were similar in hospital referral regions with the highest and lowest fifths of visits, adjustment using the standard index resulted in a rate that was 18% lower in the highest fifth (46.4 v 56.3 deaths per 1000, P<0.001). Age, sex, and race adjusted spending as well as visit corrected spending was more than 30% greater in the highest fifth of visits than in the lowest fifth, but only 12% greater after adjustment using the standard index. Similar results were obtained using the Iezzoni and the hierarchical condition categories conventions for measuring comorbidity. Conclusion The rates of visits by physicians introduce substantial bias when regional mortality and spending rates are adjusted for illness using comorbidity measures based on the observed number of diagnoses recorded in Medicare’s administrative database. Adjusting without correction for regional variation in visit rates tends to make regions with high rates of visits seem to have lower mortality and lower costs, and vice versa. Visit corrected comorbidity measures better explain variation in age, sex, and race mortality than observed measures, and reduce observational intensity bias. PMID:23430282

Genetic variation of piperidine alkaloids in Pinus ponderosa: a common garden study.

PubMed

Gerson, Elizabeth A; Kelsey, Rick G; St Clair, J Bradley

2009-02-01

Previous measurements of conifer alkaloids have revealed significant variation attributable to many sources, environmental and genetic. The present study takes a complementary and intensive, common garden approach to examine genetic variation in Pinus ponderosa var. ponderosa alkaloid production. Additionally, this study investigates the potential trade-off between seedling growth and alkaloid production, and associations between topographic/climatic variables and alkaloid production. Piperidine alkaloids were quantified in foliage of 501 nursery seedlings grown from seed sources in west-central Washington, Oregon and California, roughly covering the western half of the native range of ponderosa pine. A nested mixed model was used to test differences among broad-scale regions and among families within regions. Alkaloid concentrations were regressed on seedling growth measurements to test metabolite allocation theory. Likewise, climate characteristics at the seed sources were also considered as explanatory variables. Quantitative variation from seedling to seedling was high, and regional variation exceeded variation among families. Regions along the western margin of the species range exhibited the highest alkaloid concentrations, while those further east had relatively low alkaloid levels. Qualitative variation in alkaloid profiles was low. All measures of seedling growth related negatively to alkaloid concentrations on a natural log scale; however, coefficients of determination were low. At best, annual height increment explained 19.4 % of the variation in ln(total alkaloids). Among the climate variables, temperature range showed a negative, linear association that explained 41.8 % of the variation. Given the wide geographic scope of the seed sources and the uniformity of resources in the seedlings' environment, observed differences in alkaloid concentrations are evidence for genetic regulation of alkaloid secondary metabolism in ponderosa pine. The theoretical trade-off with seedling growth appeared to be real, however slight. The climate variables provided little evidence for adaptive alkaloid variation, especially within regions.

Comparison of the Changes in the Visible and Infrared Irradiance Observed by the SunPhotometers on EURECA to the UARS Total Solar and UV Irradiances

NASA Technical Reports Server (NTRS)

Pap, Judit

1995-01-01

Solar irradiance in the near-UV (335 nm), visible (500 nm) and infrared (778 nm) spectral bands has been measured by the SunPhotometers developed at the World Radiation Center, Davos, Switzerland on board the European Retrievable Carrier between August 1992 and May 1993. Study of the variations in the visible and infrared irradiance is important for both solar and atmospheric physics. The purpose of this paper is to examine the temporal variations observed in the visible and infrared spectral bands after eliminating the trend in the data mainly related to instrument degradation. The effect of active regions in these spectral irradiances is clearly resolved. Variations in the visible and infrared irradiances are compared to total solar irradiance observed by the SOVA2 radiometer on the EURECA platform and by the ACRIMII radiometer on UARS as well as to UV observations of the UARS and NOAA9 satellites. The space-borne spectral irradiance observations are compared to the photometric sunspot deficit and CaII K irradiance measured at the San Fernando Observatory, California State University at Northridge in order to study the effect of active regions in detail.

Morphology and time variation of the Jovian Far UV aurora: Hubble Space Telescope observations

NASA Technical Reports Server (NTRS)

Gerard, Jean-Claude; Dols, Vincent; Paresce, Francesco; Prange, Renee

1993-01-01

High spatial resolution images of the north polar region of Jupiter have been obtained with the Faint Object Camera (FOC) on board the Hubble Space Telescope (HST). The first set of two images collected 87 min apart in February 1992 shows a bright (approximately or equal to 180 kR) emission superimposed on the background in rotation with the planet. Both Ly alpha images show common regions of enhanced emission but differences are also observed, possibly due to temporal variations. The second group of images obtained on June 23 and 26, 1992 isolates a spectral region near 153 nm dominated by the H2 Lyman bands and continuum. Both pictures exhibit a narrow arc structure fitting the L = 30 magnetotail field line footprint in the morning sector and a broader diffuse aurora in the afternoon. They show no indication of an evening twilight enhancement. Although the central meridian longitudes were similar, significant differences are seen in the two exposures, especially in the region of diffuse emission, and interpreted as signatures of temporal variations. The total power radiated in the H2 bands is approximately or equal to 2 x 10(exp 12) W, in agreement with previous UV spectrometer observations. The high local H2 emission rates (approximately 450 kR) imply a particle precipitation carrying an energy flux of about 5 x 10(exp -2) W/sq m.

Observed and theoretical variations of atmospheric ozone

NASA Technical Reports Server (NTRS)

London, J.

1976-01-01

Results are summarized from three areas of ozone research: (1) continued analysis of the global distribution of total ozone to extend the global ozone atlas to summarize 15 years (1957-72) of ground based observations; (2) analysis of balloon borne ozonesonde observations for Arosa, Switzerland, and Hohenpeissenberg, Germany (GFR); (3) contined processing of the (Orbiting Geophysical Observatory-4) satellite data to complete the analysis of the stratospheric ozone distribution from the available OGO-4 data. Results of the analysis of the total ozone observations indicated that the long term ozone variation have marked regional patterns and tend to alternate with season and hemisphere. It is becoming increasingly clear that these long period changes are associated with large scale variations in the general upper atmosphere circulation patterns.

Iceberg severity off eastern North America: Its relationship to sea ice variability and climate change

DOE Office of Scientific and Technical Information (OSTI.GOV)

Marko, J.R.; Fissel, D.B.; Wadhams, P.

1994-09-01

Iceberg trajectory, deterioration (mass loss), and sea ice data are reviewed to identify the sources of observed interannual and seasonal variations in the numbers of icebergs passing south of 48[degrees]N off eastern North America. The results show the dominant role of sea ice in the observed variations. Important mechanisms involved include both seasonal modulation of the southerly iceberg flow by ice cover control of probabilities for entrapment and decay in shallow water, and the suppression of iceberg melt/deterioration rates by high concentrations of sea ice. The Labrador spring ice extent, shown to be the critical parameter in interannual iceberg numbermore » variability, was found to be either determined by or closely correlated with midwinter Davis Strait ice extents. Agreement obtained between observed year-to-year and seasonal number variations with computations based upon a simple iceberg dissipation model suggests that downstream iceberg numbers are relatively insensitive to iceberg production rates and to fluctuations in southerly iceberg fluxes in areas north of Baffin Island. Past variations in the Davis Strait ice index and annual ice extents are studied to identify trends and relationships between regional and larger-scale global climate parameters. It was found that, on decadal timescales in the post-1960 period of reasonable data quality, regional climate parameters have varied, roughly, out of phase with corresponding global and hemispheric changes. These observations are compared with expectations in terms of model results to evaluate current GCM-based capabilities for simulating recent regional behavior. 64 refs., 11 figs., 3 tabs.« less

An investigation of turbulent scatter from the mesosphere as observed by coherent-scatter radar

NASA Technical Reports Server (NTRS)

Gibbs, K. P.; Bowhill, S. A.

1983-01-01

Turbulent scatter from he mesosphere is observed using the Urbana coherent-scatter radar. The variation in signal-to-noise ratio as a function of time-of-day is examined. The origin of scattering regions is investigated by comparing the variations in scattered power and Doppler velocity. Nighttime echoes are shown for periods of enhanced electron concentration. The spectrum of the returned signal is studied with a resolution of ten seconds. Spectral information is used to increase altitude resolution and observe the motion of scatterers. The expected variation in signal-to-noise ratio with solar flux is observed. It is found that variations in the scattered power generally do not correspond to the gravity waves which are simultaneously observed. Turbulent layers are observed at altitudes with high shear in the horizontal velocity and at altitudes with low shear. The ten-second resolution is necessary to distinguish meteor echoes from echoes produced by the advection of a scattering layer through the radar beam.

An Analysis of Water Line Profiles in Star Formation Regions Observed by SWAS

NASA Technical Reports Server (NTRS)

Ashby, Matthew L. N.; Bergin, Edwin A.; Plume, Rene; Carpenter, John M.; Neufeld, David A.; Chin, Gordon; Erickson, Neal R.; Goldsmith, Paul F.; Harwit, Martin; Howe, J. E.

2000-01-01

We present spectral line profiles for the 557 GHz 1(sub 1,0) yields 1(sub 0,1) ground-state rotational transition of ortho-H2(16)O for 18 galactic star formation regions observed by SWAS. 2 Water is unambiguously detected in every source. The line profiles exhibit a wide variety of shapes, including single-peaked spectra and self-reversed profiles. We interpret these profiles using a Monte Carlo code to model the radiative transport. The observed variations in the line profiles can be explained by variations in the relative strengths of the bulk flow and small-scale turbulent motions within the clouds. Bulk flow (infall, outflow) must be present in some cloud cores, and in certain cases this bulk flow dominates the turbulent motions.

Investigation of spatial and historical variations of air pollution around an industrial region using trace and macro elements in tree components.

PubMed

Odabasi, Mustafa; Tolunay, Doganay; Kara, Melik; Ozgunerge Falay, Ezgi; Tuna, Gizem; Altiok, Hasan; Dumanoglu, Yetkin; Bayram, Abdurrahman; Elbir, Tolga

2016-04-15

Several trace and macro elements (n=48) were measured in pine needle, branch, bark, tree ring, litter, and soil samples collected at 27 sites (21 industrial, 6 background) to investigate their spatial and historical variation in Aliaga industrial region in Turkey. Concentrations generally decreased with distance from the sources and the lowest ones were measured at background sites far from major sources. Spatial distribution of anthropogenic trace elements indicated that their major sources in the region are the iron-steel plants, ship-breaking activities and the petroleum refinery. Patterns of 40 elements that were detected in most of the samples were also evaluated to assess their suitability for investigation of historical variations. Observed increasing trends of several trace and macro elements (As, Cr, Fe, Mo, Ni, V, Cu, Pb, Sb, Sn, and Hg) in the tree-ring samples were representative for the variations in anthropogenic emissions and resulting atmospheric concentrations in Aliaga region. It was shown that lanthanides (La, Ce, Pr, Nd, Sm, Gd, Dy, Er, Yb) could also be used for the investigation of historical variations due to specific industrial emissions (i.e., petroleum refining). Results of the present study showed that tree components, litter, and soil could be used to determine the spatial variations of atmospheric pollution in a region while tree rings could be used to assess the historical variations. Copyright © 2016 Elsevier B.V. All rights reserved.

Modeling the Diurnal Tides in the MLT Region with the Doppler Spread Parameterization of Gravity Waves

NASA Technical Reports Server (NTRS)

Mayr, H. G.; Mengel, J. G.; Chan, K. L.; Trob, D.; Porter, H. C.; Einaudi, Franco (Technical Monitor)

2000-01-01

Special Session: SA03 The mesosphere/lower thermosphere region: Structure, dynamics, composition, and emission. Ground based and satellite observations in the upper mesosphere and lower thermosphere (MLT) reveal large seasonal variations in the horizontal wind fields of the diurnal and semidiurnal tides. To provide an understanding of the observations, we discuss results obtained with our Numerical Spectral Model (NMS) that incorporates the gravity wave Doppler Spread Parameterization (DSP) of Hines. Our model reproduces many of the salient features observed, and we discuss numerical experiments that delineate the important processes involved. Gravity wave momentum deposition and the seasonal variations in the tidal excitation contribute primarily to produce the large equinoctial amplitude maxima in the diurnal tide. Gravity wave induced variations in eddy viscosity, not accounted for in the model, have been shown by Akmaev to be important too. For the semidiurnal tide, with amplitude maximum observed during winter solstice, these processes also contribute, but filtering by the mean zonal circulation is more important. A deficiency of our model is that it cannot reproduce the observed seasonal variations in the phase of the semidiurnal tide, and numerical experiments are being carried out to diagnose the cause and to alleviate this problem. The dynamical components of the upper mesosphere are tightly coupled through non-linear processes and wave filtering, and this may constrain the model and require it to reproduce in detail the observed phenomenology.

Calculation of effective atomic number and electron density of essential biomolecules for electron, proton, alpha particle and multi-energetic photon interactions

NASA Astrophysics Data System (ADS)

Kurudirek, Murat; Onaran, Tayfur

2015-07-01

Effective atomic numbers (Zeff) and electron densities (Ne) of some essential biomolecules have been calculated for total electron interaction, total proton interaction and total alpha particle interaction using an interpolation method in the energy region 10 keV-1 GeV. Also, the spectrum weighted Zeff for multi-energetic photons has been calculated using Auto-Zeff program. Biomolecules consist of fatty acids, amino acids, carbohydrates and basic nucleotides of DNA and RNA. Variations of Zeff and Ne with kinetic energy of ionizing charged particles and effective photon energies of heterogeneous sources have been studied for the given materials. Significant variations in Zeff and Ne have been observed through the entire energy region for electron, proton and alpha particle interactions. Non-uniform variation has been observed for protons and alpha particles in low and intermediate energy regions, respectively. The maximum values of Zeff have found to be in higher energies for total electron interaction whereas maximum values have found to be in relatively low energies for total proton and total alpha particle interactions. When it comes to the multi-energetic photon sources, it has to be noted that the highest Zeff values were found at low energy region where photoelectric absorption is the pre-dominant interaction process. The lowest values of Zeff have been shown in biomolecules such as stearic acid, leucine, mannitol and thymine, which have highest H content in their groups. Variation in Ne seems to be more or less the same with the variation in Zeff for the given materials as expected.

Differences in protein expression among five species of stream stonefly (Plecoptera) along a latitudinal gradient in Japan.

PubMed

Gamboa, Maribet; Tsuchiya, Maria Claret; Matsumoto, Suguru; Iwata, Hisato; Watanabe, Kozo

2017-11-01

Proteome variation among natural populations along an environmental gradient may provide insights into how the biological functions of species are related to their local adaptation. We investigated protein expression in five stream stonefly species from four geographic regions along a latitudinal gradient in Japan with varying climatic conditions. The extracted proteins were separated by two-dimensional gel electrophoresis and identified by matrix-assisted laser desorption/ionization of time-of-flight (MALDI TOF/TOF), yielding 446 proteins. Low interspecies variation in the proteome profiles was observed among five species within geographical regions, presumably due to the co-occurring species sharing the environments. However, large spatial variations in protein expression were found among four geographic regions, suggesting strong regulation of protein expression in heterogeneous environments, where the spatial variations were positively correlated with water temperature. We identified 21 unique proteins expressed specifically in a geographical region and six common proteins expressed throughout all regions. In warmer regions, metabolic proteins were upregulated, whereas proteins related to cold stress, the photoperiod, and mating were downregulated. Oxygen-related and energy-production proteins were upregulated in colder regions with higher altitudes. Thus, our proteomic approach is useful for identifying and understanding important biological functions related to local adaptations by populations of stoneflies. © 2017 Wiley Periodicals, Inc.

What can He II 304 Å tell us about transient seismic emission from solar flares?

NASA Astrophysics Data System (ADS)

Lindsey, C.; Donea, A. C.

2017-10-01

After neary 20 years since their discovery by Kosovichev and Zharkova, the mechanics of the release of seismic transients into the solar interior from some flares remain a mystery. Seismically emissive flares invariably show the signatures of intense chromosphere heating consistent with pressure variations sufficient to drive seismic transients commensurate with helioseismic observations-under certain conditions. Magnetic observations show the signatures of apparent magnetic changes, suggesting Lorentz-force transients that could likewise drive seismic transients-similarly subject to certain conditions. But, the diagnostic signatures of both of these prospective drivers are apparent over vast regions from which no significant seismic emission emanates. What distinguishes the source regions of transient seismic emission from the much vaster regions that show the signatures of both transient heating and magnetic variations but are acoustically unproductive? Observations of acoustically active flares in He II 304 Å by the Atomospheric Imaging Assembly (AIA) aboard the Solar Dynamics Observatory (SDO) offer a promising new resource with which to address this question.

CHAMP Magnetic Anomalies of the Antarctic Crust

NASA Technical Reports Server (NTRS)

Kim, Hyung Rae; Gaya-Pique, Luis R.; vonFrese, Ralph R. B.; Taylor, Patrick T.; Kim, Jeong Woo

2003-01-01

Regional magnetic signals of the crust are strongly masked by the core field and its secular variations components and hence difficult to isolate in the satellite measurements. In particular, the un-modeled effects of the strong auroral external fields and the complicated- behavior of the core field near the geomagnetic poles conspire to greatly reduce the crustal magnetic signal-to-noise ratio in the polar regions relative to the rest of the Earth. We can, however, use spectral correlation theory to filter the static lithospheric and core field components from the dynamic external field effects. To help isolate regional lithospheric from core field components, the correlations between CHAMP magnetic anomalies and the pseudo magnetic effects inferred from gravity-derived crustal thickness variations can also be exploited.. Employing these procedures, we processed the CHAMP magnetic observations for an improved magnetic anomaly map of the Antarctic crust. Relative to the much higher altitude Orsted and noisier Magsat observations, the CHAMP magnetic anomalies at 400 km altitude reveal new details on the effects of intracrustal magnetic features and crustal thickness variations of the Antarctic.

Cross-cultural variation of memory colors of familiar objects.

PubMed

Smet, Kevin A G; Lin, Yandan; Nagy, Balázs V; Németh, Zoltan; Duque-Chica, Gloria L; Quintero, Jesús M; Chen, Hung-Shing; Luo, Ronnier M; Safi, Mahdi; Hanselaer, Peter

2014-12-29

The effect of cross-regional or cross-cultural differences on color appearance ratings and memory colors of familiar objects was investigated in seven different countries/regions - Belgium, Hungary, Brazil, Colombia, Taiwan, China and Iran. In each region the familiar objects were presented on a calibrated monitor in over 100 different colors to a test panel of observers that were asked to rate the similarity of the presented object color with respect to what they thought the object looks like in reality (memory color). For each object and region the mean observer ratings were modeled by a bivariate Gaussian function. A statistical analysis showed significant (p < 0.001) differences between the region average observers and the global average observer obtained by pooling the data from all regions. However, the effect size of geographical region or culture was found to be small. In fact, the differences between the region average observers and the global average observer were found to of the same magnitude or smaller than the typical within region inter-observer variability. Thus, although statistical differences in color appearance ratings and memory between regions were found, regional impact is not likely to be of practical importance.

Analysis of precipitable water vapor from GPS measurements in Chengdu region: Distribution and evolution characteristics in autumn

NASA Astrophysics Data System (ADS)

Wang, Hao; Wei, Ming; Li, Guoping; Zhou, Shenghui; Zeng, Qingfeng

2013-08-01

The rainfall process of Chengdu region in autumn has obvious regional features. Especially, the night-time rain rate of this region in this season is very high in China. Studying the spatial distribution and temporal variation of regional atmospheric precipitable water vapor (PWV) is important for our understanding of water vapor related processes, such as rainfall, evaporation, convective activity, among others in this area. Since GPS detection technology has the unique characteristics, such as all-weather, high accuracy, high spatial and temporal resolution as well as low cost, tracking and monitoring techniques on water vapor has achieved rapid developments in recent years. With GPS-PWV data at 30-min interval gathered from six GPS observational stations in Chengdu region in two autumns (September 2007-December 2007 and September 2008-December 2008), it is revealed that negative correlations exist between seasonally averaged value of GPS-PWV as well as its variation amplitude and local terrain altitude. The variation of PWV in the upper atmosphere of this region results from the water vapor variation from surface to 850 hPa. With the help of Fast Fourier Transform (FFT), it is found that the autumn PWV in Chengdu region has a multi-scale feature, which includes a seasonal cycle, 22.5 days period (quasi-tri-weekly oscillation). The variation of the GPS-PWV is related to periodical change in the transmitting of the water vapor caused by zonal and meridional wind strengths’ change and to the East Asian monsoon system. According to seasonal variation characteristics, we concluded that the middle October is the critical turning point in PWV content. On a shorter time scale, the relationship between autumn PWV and ground meteorological elements was obtained using the composite analysis approach.

Correlation between temperature variations of static and dynamic properties in glass-forming liquids

DOE PAGES

Voylov, D. N.; Griffin, P. J.; Mercado, B.; ...

2016-12-29

In this detailed analysis of the static structure factor S(Q) in several glass-forming liquids we show that the temperature variations of the width of the main diffraction peak Q(T ) correlate with the fragility of these liquids. Our observation suggests a direct connection between rather subtle structural changes and sharp slowing down of structural relaxation in glass-forming liquids. We also show that this observation can be rationalized using the Adam-Gibbs approach, through a connection between temperature variations of structural correlation length, lc 2 /Q, and the size of cooperatively rearranging regions.

Use of cumulative mortality data in patients with acute myocardial infarction for early detection of variation in clinical practice: observational study.

PubMed

Lawrance, R A; Dorsch, M F; Sapsford, R J; Mackintosh, A F; Greenwood, D C; Jackson, B M; Morrell, C; Robinson, M B; Hall, A S

2001-08-11

Use of cumulative mortality adjusted for case mix in patients with acute myocardial infarction for early detection of variation in clinical practice. Observational study. 20 hospitals across the former Yorkshire region. All 2153 consecutive patients with confirmed acute myocardial infarction identified during three months. Variable life-adjusted displays showing cumulative differences between observed and expected mortality of patients; expected mortality calculated from risk model based on admission characteristics of age, heart rate, and systolic blood pressure. The performance of two individual hospitals over three months was examined as an example. One, the smallest district hospital in the region, had a series of 30 consecutive patients but had five more deaths than predicted. The variable life-adjusted display showed minimal variation from that predicted for the first 15 patients followed by a run of unexpectedly high mortality. The second example was the main tertiary referral centre for the region, which admitted 188 consecutive patients. The display showed a period of apparently poor performance followed by substantial improvement, where the plot rose steadily from a cumulative net lives saved of -4 to 7. These variations in patient outcome are unlikely to have been revealed during conventional audit practice. Variable life-adjusted display has been integrated into surgical care as a graphical display of risk-adjusted survival for individual surgeons or centres. In combination with a simple risk model, it may have a role in monitoring performance and outcome in patients with acute myocardial infarction.

Satellite Soil Moisture and Water Storage Observations Identify Early and Late Season Water Supply Influencing Plant Growth in the Missouri Watershed

NASA Astrophysics Data System (ADS)

A, G.; Velicogna, I.; Kimball, J. S.; Du, J.; Kim, Y.; Colliander, A.; Njoku, E. G.

2017-12-01

We employ an array of continuously overlapping global satellite sensor observations including combined surface soil moisture (SM) estimates from SMAP, AMSR-E and AMSR-2, GRACE terrestrial water storage (TWS), and satellite precipitation measurements, to characterize seasonal timing and inter-annual variations of the regional water supply pattern and its associated influence on vegetation growth estimates from MODIS enhanced vegetation index (EVI), AMSR-E/2 vegetation optical depth (VOD) and GOME-2 solar-induced florescence (SIF). Satellite SM is used as a proxy of plant-available water supply sensitive to relatively rapid changes in surface condition, GRACE TWS measures seasonal and inter-annual variations in regional water storage, while precipitation measurements represent the direct water input to the analyzed ecosystem. In the Missouri watershed, we find surface SM variations are the dominant factor controlling vegetation growth following the peak of the growing season. Water supply to growth responds to both direct precipitation inputs and groundwater storage carry-over from prior seasons (winter and spring), depending on land cover distribution and regional climatic condition. For the natural grassland in the more arid central and northwest watershed areas, an early season anomaly in precipitation or surface temperature can have a lagged impact on summer vegetation growth by affecting the surface SM and the underlying TWS supplies. For the croplands in the more humid eastern portions of the watershed, the correspondence between surface SM and plant growth weakens. The combination of these complementary remote-sensing observations provides an effective means for evaluating regional variations in the timing and availability of water supply influencing vegetation growth.

On the forces that drive and resist deformation of the south-central Mediterranean: a mechanical model study

NASA Astrophysics Data System (ADS)

Nijholt, Nicolai; Govers, Rob; Wortel, Rinus

2018-04-01

The geodynamics of the Mediterranean comprises a transitional setting in which slab rollback and plate convergence compete to shape the region. In the central Mediterranean, where the balance of driving and resisting forces changes continuously and rapidly since the Miocene, both kinematic and seismo-tectonic observations display a strong variation in deformation style and, therefore possibly, lithospheric forces. We aim to understand the current kinematics in southern Italy and Sicily in terms of lithospheric forces that cause them. The strong regional variation of geodetic velocities appears to prohibit such simple explanation. We use mechanical models to quantify the deformation resulting from large-scale Africa-Eurasia convergence, ESE retreat of the Calabrian subduction zone, pull by the Aegean slab, and regional variations in gravitational potential energy (topography). A key model element is the resistance to slip on major regional fault zones. We show that geodetic velocities, seismicity and sense of slip on regional faults can be understood to result from lithospheric forces. Our most important new finding is that regional variations in resistive tractions are required to fit the observations, with notably very low tractions on the Calabrian subduction contact, and a buildup towards a significant earthquake in the Calabrian fore-arc. We also find that the Calabrian net slab pull force is strongly reduced (compared to the value possible in view of the slab's dimensions) and that trench suction tractions are negligible. Such very small contributions to the present-day force balance in the south-central Mediterranean suggest that the Calabrian arc is now further transitioning towards a setting dominated by Africa-Eurasia plate convergence, whereas during the past 30 Myrs slab retreat continually was the dominant factor.

Variability of lotic macroinvertebrate assemblages and stream habitat characteristics across hierarchical landscape classifications.

PubMed

Mykrä, Heikki; Heino, Jani; Muotka, Timo

2004-09-01

Streams are naturally hierarchical systems, and their biota are affected by factors effective at regional to local scales. However, there have been only a few attempts to quantify variation in ecological attributes across multiple spatial scales. We examined the variation in several macroinvertebrate metrics and environmental variables at three hierarchical scales (ecoregions, drainage systems, streams) in boreal headwater streams. In nested analyses of variance, significant spatial variability was observed for most of the macroinvertebrate metrics and environmental variables examined. For most metrics, ecoregions explained more variation than did drainage systems. There was, however, much variation attributable to residuals, suggesting high among-stream variation in macroinvertebrate assemblage characteristics. Nonmetric multidimensional scaling (NMDS) and multiresponse permutation procedure (MRPP) showed that assemblage composition differed significantly among both drainage systems and ecoregions. The associated R-statistics were, however, very low, indicating wide variation among sites within the defined landscape classifications. Regional delineations explained most of the variation in stream water chemistry, ecoregions being clearly more influential than drainage systems. For physical habitat characteristics, by contrast, the among-stream component was the major source of variation. Distinct differences attributable to stream size were observed for several metrics, especially total number of taxa and abundance of algae-scraping invertebrates. Although ecoregions clearly account for a considerable amount of variation in macroinvertebrate assemblage characteristics, we suggest that a three-tiered classification system (stratification through ecoregion and habitat type, followed by assemblage prediction within these ecologically meaningful units) will be needed for effective bioassessment of boreal running waters.

Unexpected and Unexplained Surface Temperature Variations on Mimas

NASA Astrophysics Data System (ADS)

Howett, C.; Spencer, J. R.; Pearl, J. C.; Hurford, T. A.; Segura, M.; Cassini Cirs Team

2010-12-01

Until recently it was thought one of the most interesting things about Mimas, Saturn’s innermost classical icy moon, was its resemblance to Star Wars’ Death Star. However, a bizarre pattern of daytime surface temperatures was observed on Mimas using data obtained by Cassini’s Composite Infrared Spectrometer (CIRS) in February 2010. The observations were taken during Cassini’s closest ever encounter with Mimas (<10,000 km) and cover the daytime anti-Saturn hemisphere centered on longitude ~145° W. Instead of surface temperatures smoothly increasing throughout the morning and early afternoon, then cooling in the evening, as expected, a sharp V-shaped boundary is observed separating cooler midday and afternoon temperatures (~77 K) on the leading side from warmer morning temperatures (~92 K) on the trailing side. The boundary’s apex is centered at equatorial latitudes near the anti-Saturn point and extends to low north and south latitudes on the trailing side. Subtle differences in the surface colors have been observed that are roughly spatially correlated with the observed extent of the temperature anomaly, with the cooler regions tending to be bluer (Schenk et al., Submitted). However, visible-wavelength albedo is similar in the two regions, so albedo variations are probably not directly responsible for the thermal anomaly. It is more likely that thermal inertia variations produce the anomaly, with thermal inertia being unusually high in the region with anomalously low daytime temperatures. Comparison of the February 2010 CIRS data to previous lower spatial resolution data taken at different local times tentatively confirm that the cooler regions do indeed display higher thermal inertias. Bombardment of the surface by high energy electrons from Saturn’s radiation belts has been proposed to explain the observed color variations (Schenk et al., Submitted). Electrons above ~1 MeV preferentially impact Mimas’ leading hemisphere at low latitudes where they could cause surface defects. For this process to also explain the observed temperature differences it would have to affect the surface’s thermal inertia to a depth comparable to the diurnal thermal skin-depth (~0.5 cm). However, whether the formation of the giant Herschel crater (which lies in the middle of the observed portion of the cold region) contributed to the observed temperature anomaly or if electron bombardment alone is able to explain the thermal anomaly is currently unknown. Future CIRS observations should be able to map the full spatial extent of the thermal anomaly and clarify whether it is centered on (and thus likely related to) Herschel, or is centered on the trailing hemisphere and thus likely to be related to the observed color anomaly.

Space-based constraints on spatial and temporal patterns of NO(x) emissions in California, 2005-2008.

PubMed

Russell, Ashley R; Valin, Lukas C; Bucsela, Eric J; Wenig, Mark O; Cohen, Ronald C

2010-05-01

We describe ground and space-based measurements of spatial and temporal variation of NO(2) in four California metropolitan regions. The measurements of weekly cycles and trends over the years 2005-2008 observed both from the surface and from space are nearly identical to each other. Observed decreases in Los Angeles and the surrounding cities are 46% on weekends and 9%/year from 2005-2008. Similar decreases are observed in the San Francisco Bay area and in Sacramento. In the San Joaquin Valley cities of Fresno and Bakersfield weekend decreases are much smaller, only 27%, and the decreasing trend is only 4%/year. We describe evidence that the satellite observations provide a uniquely complete view of changes in spatial patterns over time. For example, we observe variations in the spatial pattern of weekday-weekend concentrations in the Los Angeles basin with much steeper weekend decreases at the eastern edge of the basin. We also observe that the spatial extent of high NO(2) in the San Joaquin Valley has not receded as much as it has for other regions in the state. Analysis of these measurements is used to describe observational constraints on temporal trends in emission sources in the different regions.

Effects of the planetary-scale waves on the temporal variations of the O2-1.27μm nightglow in the Venusian upper atmosphere

NASA Astrophysics Data System (ADS)

Hoshino, N.; Fujiwara, H.; Takagi, M.; Kasaba, Y.; Takahashi, Y.

2009-12-01

The O2-1.27 μm nightglow distribution, which has the peak intensity in the depression region of the day-to-night flow, gives us information of the wind field at about 95 km in Venus. The past nightglow observations [Crisp et al., 1996] showed that the intensity of the nightglow in the brightness region changed by 20 % in about one hour, and the brightness region disappeared in less than one day. The observation results obtained by Venus Express (VEX) also showed the temporal variations of the nightglow emission. Some simulation studies suggested contributions of gravity waves generated in the cloud deck (50-70 km) to the temporal variations. However, the causes of the temporal variations are still unknown. In recent years, the importance of planetary-scale waves for the dynamics of the Venusian atmosphere has been recognized. For example, Takagi and Matsuda [2006] suggested that the atmospheric superrotation was driven by the momentum transport due to the vertical propagation of the thermal tides generated in the Venus cloud deck. In order to estimate effects of the planetary-scale waves on the temporal variations of the nightglow, we have performed numerical simulations with a general circulation model (GCM), which includes the altitude region of 80 - about 200 km. The planetary-scale waves (thermal tides, Kelvin wave and Rosbby wave) are imposed at the lower boundary. The amplitudes and phase velocities of the waves are assumed from the study by Del Genio and Rossow [1990]. The nightglow intensity and its global distribution are calculated from the GCM results assuming the chemical equilibration. In this study, we investigate contributions of the planetary-scale waves on the temporal variations of the nightglow shown by past observations. In addition, we show the characteristics of the wave propagation and the interactions between the waves in the Venusian upper atmosphere. Venus Climate Orbiter (VCO), which will be launched in 2010 as the second Japanese planetary mission, is expected to provide precious information about the atmospheric waves at the cloud top (about 70 km) and the nightglow distributions in the thermosphere. We can understand effects of the atmospheric waves on the Venusian thermosphere quantitatively by performing simulations with new information about the atmospheric waves obtained from the detailed nightglow observations.

The Sun as a variable star: Solar and stellar irradiance variations; Colloquium of the International Astronomical Union, 143rd, Boulder, CO, Jun. 20-25, 1993

NASA Technical Reports Server (NTRS)

Pap, Judit M. (Editor); Froehlich, Claus (Editor); Hudson, Hugh S. (Editor); Tobiska, W. Kent (Editor)

1994-01-01

Variations in solar and stellar irradiances have long been of interest. An International Astronomical Union (IAU) colloquium reviewed such relevant subjects as observations, theoretical interpretations, and empirical and physical models, with a special emphasis on climatic impact of solar irradiance variability. Specific topics discussed included: (1) General Reviews on Observations of Solar and Stellar Irradiance Variability; (2) Observational Programs for Solar and Stellar Irradiance Variability; (3) Variability of Solar and Stellar Irradiance Related to the Network, Active Regions (Sunspots and Plages), and Large-Scale Magnetic Structures; (4) Empirical Models of Solar Total and Spectral Irradiance Variability; (5) Solar and Stellar Oscillations, Irradiance Variations and their Interpretations; and (6) The Response of the Earth's Atmosphere to Solar Irradiance Variations and Sun-Climate Connections.

Temperature Effect in Secondary Cosmic Rays (MUONS) Observed at the Ground: Analysis of the Global MUON Detector Network Data

NASA Astrophysics Data System (ADS)

de Mendonça, R. R. S.; Braga, C. R.; Echer, E.; Dal Lago, A.; Munakata, K.; Kuwabara, T.; Kozai, M.; Kato, C.; Rockenbach, M.; Schuch, N. J.; Jassar, H. K. Al; Sharma, M. M.; Tokumaru, M.; Duldig, M. L.; Humble, J. E.; Evenson, P.; Sabbah, I.

2016-10-01

The analysis of cosmic ray intensity variation seen by muon detectors at Earth's surface can help us to understand astrophysical, solar, interplanetary and geomagnetic phenomena. However, before comparing cosmic ray intensity variations with extraterrestrial phenomena, it is necessary to take into account atmospheric effects such as the temperature effect. In this work, we analyzed this effect on the Global Muon Detector Network (GMDN), which is composed of four ground-based detectors, two in the northern hemisphere and two in the southern hemisphere. In general, we found a higher temperature influence on detectors located in the northern hemisphere. Besides that, we noticed that the seasonal temperature variation observed at the ground and at the altitude of maximum muon production are in antiphase for all GMDN locations (low-latitude regions). In this way, contrary to what is expected in high-latitude regions, the ground muon intensity decrease occurring during summertime would be related to both parts of the temperature effect (the negative and the positive). We analyzed several methods to describe the temperature effect on cosmic ray intensity. We found that the mass weighted method is the one that best reproduces the seasonal cosmic ray variation observed by the GMDN detectors and allows the highest correlation with long-term variation of the cosmic ray intensity seen by neutron monitors.

THE TEMPERATURE EFFECT IN SECONDARY COSMIC RAYS (MUONS) OBSERVED AT THE GROUND: ANALYSIS OF THE GLOBAL MUON DETECTOR NETWORK DATA

DOE Office of Scientific and Technical Information (OSTI.GOV)

De Mendonça, R. R. S.; Braga, C. R.; Echer, E.

2016-10-20

The analysis of cosmic ray intensity variation seen by muon detectors at Earth's surface can help us to understand astrophysical, solar, interplanetary and geomagnetic phenomena. However, before comparing cosmic ray intensity variations with extraterrestrial phenomena, it is necessary to take into account atmospheric effects such as the temperature effect. In this work, we analyzed this effect on the Global Muon Detector Network (GMDN), which is composed of four ground-based detectors, two in the northern hemisphere and two in the southern hemisphere. In general, we found a higher temperature influence on detectors located in the northern hemisphere. Besides that, we noticedmore » that the seasonal temperature variation observed at the ground and at the altitude of maximum muon production are in antiphase for all GMDN locations (low-latitude regions). In this way, contrary to what is expected in high-latitude regions, the ground muon intensity decrease occurring during summertime would be related to both parts of the temperature effect (the negative and the positive). We analyzed several methods to describe the temperature effect on cosmic ray intensity. We found that the mass weighted method is the one that best reproduces the seasonal cosmic ray variation observed by the GMDN detectors and allows the highest correlation with long-term variation of the cosmic ray intensity seen by neutron monitors.« less

Systematic Regional Variations in Purkinje Cell Spiking Patterns

PubMed Central

Xiao, Jianqiang; Cerminara, Nadia L.; Kotsurovskyy, Yuriy; Aoki, Hanako; Burroughs, Amelia; Wise, Andrew K.; Luo, Yuanjun; Marshall, Sarah P.; Sugihara, Izumi; Apps, Richard; Lang, Eric J.

2014-01-01

In contrast to the uniform anatomy of the cerebellar cortex, molecular and physiological studies indicate that significant differences exist between cortical regions, suggesting that the spiking activity of Purkinje cells (PCs) in different regions could also show distinct characteristics. To investigate this possibility we obtained extracellular recordings from PCs in different zebrin bands in crus IIa and vermis lobules VIII and IX in anesthetized rats in order to compare PC firing characteristics between zebrin positive (Z+) and negative (Z−) bands. In addition, we analyzed recordings from PCs in the A2 and C1 zones of several lobules in the posterior lobe, which largely contain Z+ and Z− PCs, respectively. In both datasets significant differences in simple spike (SS) activity were observed between cortical regions. Specifically, Z− and C1 PCs had higher SS firing rates than Z+ and A2 PCs, respectively. The irregularity of SS firing (as assessed by measures of interspike interval distribution) was greater in Z+ bands in both absolute and relative terms. The results regarding systematic variations in complex spike (CS) activity were less consistent, suggesting that while real differences can exist, they may be sensitive to other factors than the cortical location of the PC. However, differences in the interactions between SSs and CSs, including the post-CS pause in SSs and post-pause modulation of SSs, were also consistently observed between bands. Similar, though less strong trends were observed in the zonal recordings. These systematic variations in spontaneous firing characteristics of PCs between zebrin bands in vivo, raises the possibility that fundamental differences in information encoding exist between cerebellar cortical regions. PMID:25144311

A population health approach to reducing observational intensity bias in health risk adjustment: cross sectional analysis of insurance claims.

PubMed

Wennberg, David E; Sharp, Sandra M; Bevan, Gwyn; Skinner, Jonathan S; Gottlieb, Daniel J; Wennberg, John E

2014-04-10

To compare the performance of two new approaches to risk adjustment that are free of the influence of observational intensity with methods that depend on diagnoses listed in administrative databases. Administrative data from the US Medicare program for services provided in 2007 among 306 US hospital referral regions. Cross sectional analysis. 20% sample of fee for service Medicare beneficiaries residing in one of 306 hospital referral regions in the United States in 2007 (n = 5,153,877). The effect of health risk adjustment on age, sex, and race adjusted mortality and spending rates among hospital referral regions using four indices: the standard Centers for Medicare and Medicaid Services--Hierarchical Condition Categories (HCC) index used by the US Medicare program (calculated from diagnoses listed in Medicare's administrative database); a visit corrected HCC index (to reduce the effects of observational intensity on frequency of diagnoses); a poverty index (based on US census); and a population health index (calculated using data on incidence of hip fractures and strokes, and responses from a population based annual survey of health from the Centers for Disease Control and Prevention). Estimated variation in age, sex, and race adjusted mortality rates across hospital referral regions was reduced using the indices based on population health, poverty, and visit corrected HCC, but increased using the standard HCC index. Most of the residual variation in age, sex, and race adjusted mortality was explained (in terms of weighted R2) by the population health index: R2=0.65. The other indices explained less: R2=0.20 for the visit corrected HCC index; 0.19 for the poverty index, and 0.02 for the standard HCC index. The residual variation in age, sex, race, and price adjusted spending per capita across the 306 hospital referral regions explained by the indices (in terms of weighted R2) were 0.50 for the standard HCC index, 0.21 for the population health index, 0.12 for the poverty index, and 0.07 for the visit corrected HCC index, implying that only a modest amount of the variation in spending can be explained by factors most closely related to mortality. Further, once the HCC index is visit corrected it accounts for almost none of the residual variation in age, sex, and race adjusted spending. Health risk adjustment using either the poverty index or the population health index performed substantially better in terms of explaining actual mortality than the indices that relied on diagnoses from administrative databases; the population health index explained the majority of residual variation in age, sex, and race adjusted mortality. Owing to the influence of observational intensity on diagnoses from administrative databases, the standard HCC index over-adjusts for regional differences in spending. Research to improve health risk adjustment methods should focus on developing measures of risk that do not depend on observation influenced diagnoses recorded in administrative databases.

Greenland uplift and regional sea level changes from ICESat observations and GIA modelling

NASA Astrophysics Data System (ADS)

Spada, G.; Ruggieri, G.; Sørensen, L. S.; Nielsen, K.; Melini, D.; Colleoni, F.

2012-06-01

We study the implications of a recently published mass balance of the Greenland ice sheet (GrIS), derived from repeated surface elevation measurements from NASA's ice cloud and land elevation satellite (ICESat) for the time period between 2003 and 2008. To characterize the effects of this new, high-resolution GrIS mass balance, we study the time-variations of various geophysical quantities in response to the current mass loss. They include vertical uplift and subsidence, geoid height variations, global patterns of sea level change (or fingerprints), and regional sea level variations along the coasts of Greenland. Long-wavelength uplifts and gravity variations in response to current or past ice thickness variations are obtained solving the sea level equation, which accounts for both the elastic and the viscoelastic components of deformation. To capture the short-wavelength components of vertical uplift in response to current ice mass loss, which is not resolved by satellite gravity observations, we have specifically developed a high-resolution regional elastic rebound (ER) model. The elastic component of vertical uplift is combined with estimates of the viscoelastic displacement fields associated with the process of glacial-isostatic adjustment (GIA), according to a set of published ice chronologies and associated mantle rheological profiles. We compare the sensitivity of global positioning system (GPS) observations along the coasts of Greenland to the ongoing ER and GIA. In notable contrast with past reports, we show that vertical velocities obtained by GPS data from five stations with sufficiently long records and from one tide gauge at the GrIS margins can be reconciled with model predictions based on the ICE-5G deglaciation model and the ER associated with the new ICESat-derived mass balance.

The Chemical Evolution Carousel of Spiral Galaxies: Azimuthal Variations of Oxygen Abundance in NGC1365

NASA Astrophysics Data System (ADS)

Ho, I.-Ting; Seibert, Mark; Meidt, Sharon E.; Kudritzki, Rolf-Peter; Kobayashi, Chiaki; Groves, Brent A.; Kewley, Lisa J.; Madore, Barry F.; Rich, Jeffrey A.; Schinnerer, Eva; D’Agostino, Joshua; Poetrodjojo, Henry

2017-09-01

The spatial distribution of oxygen in the interstellar medium of galaxies is the key to understanding how efficiently metals that are synthesized in massive stars can be redistributed across a galaxy. We present here a case study in the nearby spiral galaxy NGC 1365 using 3D optical data obtained in the TYPHOON Program. We find systematic azimuthal variations of the H II region oxygen abundance imprinted on a negative radial gradient. The 0.2 dex azimuthal variations occur over a wide radial range of 0.3–0.7 R 25 and peak at the two spiral arms in NGC 1365. We show that the azimuthal variations can be explained by two physical processes: gas undergoes localized, sub-kiloparsec-scale self-enrichment when orbiting in the inter-arm region, and experiences efficient, kiloparsec-scale mixing-induced dilution when spiral density waves pass through. We construct a simple chemical evolution model to quantitatively test this picture and find that our toy model can reproduce the observations. This result suggests that the observed abundance variations in NGC 1365 are a snapshot of the dynamical local enrichment of oxygen modulated by spiral-driven, periodic mixing and dilution.

Characteristics of ionospheric electron density profiles in the auroral and polar cap regions from long-term incoherent scatter radar observations

NASA Astrophysics Data System (ADS)

Jee, G.; Kim, E.; Kwak, Y. S.; Kim, Y.; Kil, H.

2017-12-01

We investigate the climatological characteristics of the ionospheric electron density profiles in the auroral and polar cap regions in comparison with the mid-latitude ionosphere using incoherent scatter radars (ISR) observations from Svalbard (78.15N, 16.05E), Tromso (69.59N, 19.23E), and Millstone Hill (42.6N, 288.5E) during a period of 1995 - 2015. Diurnal variations of electron density profiles from 100 to 500 km are compared among the three radar observations during equinox, summer and winter solstice for different solar and geomagnetic activities. Also investigated are the physical characteristics of E-region and F-region peak parameters of electron density profiles in the auroral and polar cap regions, which are significantly different from the mid-latitude ionosphere. In the polar ionosphere, the diurnal variations of density profiles are extremely small in summer hemisphere. Semiannual anomaly hardly appears for all latitudes, but winter anomaly occurs at mid-latitude and auroral ionospheres for high solar activity. Nighttime density becomes larger than daytime density in the winter polar cap ionosphere for high solar activity. The E-region peak is very distinctive in the nighttime auroral region and the peak height is nearly constant at about 110 km for all conditions. Compared with the F-region peak density, the E-region peak density does not change much with solar activity. Furthermore, the E-region peak density can be even larger than F-region density for low solar activity in the auroral region, particularly during disturbed condition.

Regional, annual, and individual variations in the dihydroxyacetone content of the nectar of ma̅nuka (Leptospermum scoparium) in New Zealand.

PubMed

Williams, Simon; King, Jessica; Revell, Maria; Manley-Harris, Merilyn; Balks, Megan; Janusch, Franziska; Kiefer, Michael; Clearwater, Michael; Brooks, Peter; Dawson, Murray

2014-10-22

A method was designed and validated for the analysis of dihydroxyacetone in the floral nectar of ma̅nuka (Leptospermum scoparium). The method was applied to samples collected from different regions of the North Island and the Nelson region of the upper South Island of New Zealand during the period 2009-2012 as well as to nectar samples from some Australian Leptospermum species. The ratio of dihydroxyacetone to total sugar (DHA/Tsugar) was classified as low (<0.001 mg/mg), moderate (0.001-0.002 mg/mg), or high (>0.002 mg/mg). Inter- and intraregional variation were observed as well as interannual variation with variation from low to high classification occurring within one region and from low to moderate between years. Australian species also demonstrated elevated levels of dihydroxyacetone in the nectar. Some garden cultivars were shown to produce very high nectar DHA/Tsugar, and a survey of cultivars was undertaken; cultivars with single-flowered red or pink flowers were the most common producers of very high nectar DHA/Tsugar.

Seasonal variation of wave activities near the mesopause region observed at King Sejong Station (62.22°S, 58.78°W), Antarctica

NASA Astrophysics Data System (ADS)

Lee, Changsup; Kim, Yong Ha; Kim, Jeong-Han; Jee, Geonhwa; Won, Young-In; Wu, Dong L.

2013-12-01

We analyzed the neutral wind data at altitudes of 80-100 km obtained from a VHF meteor radar at King Sejong Station (KSS, 62.22°S, 58.78°W), a key location to study wave activities above the stratospheric vortex near the Antarctic Peninsula. The seasonal behavior of the semidiurnal tides is generally consistent with the prediction of Global Scale Wave Model (GSWM02) except in the altitude region above ~96 km. Gravity wave (GW) activities inferred from the neutral wind variances show a seasonal variation very similar to the semidiurnal tide amplitudes, suggesting a strong interaction between gravity waves and the tide. Despite the consistent seasonal variations of the GW wind variances observed at the adjacent Rothera station, the magnitudes of the wind variance obtained at KSS are much larger than those at Rothera, especially during May-September. The enhanced GW activity at KSS is also observed by Aura Microwave Limb Sounder (MLS) from space in its temperature variance. The observed large wind variances at KSS imply that the Antarctic vortex in the stratosphere may act as an effective filter and source for the GWs in the upper atmosphere.

Regional Deformation Studies with GRACE and GPS

NASA Technical Reports Server (NTRS)

Davis, J. L.; Elosequi, P.; Tamisiea, M.; Mitrovica, J. X.

2005-01-01

GRACE data indicate large seasonal variations in gravity that have been shown to be to be related to climate-driven fluxes of surface water. Seasonal redistribution of surface mass deforms the Earth, and our previous study using GRACE data demonstrate that annual radial deformations of +/-13 mm in the region of Amazon River Basin were observed by both GRACE and ten GPS sites in the region. For the GRACE determinations, we estimate in a least-squares solution for each Stokes coefficient parameters that represent the amplitudes of the annual variation. We then filter these parameters based on a statistical test that uses the scatter of the postfit residuals. We demonstrate by comparison to the GPS amplitudes that this method is more accurate, for this region, than Gaussian smoothing. Our model for the temporal behavior of the gravity coefficients includes a rate term, and although the time series are noisy, the glacial isostatic adjustment signal over Hudson s Bay can be observed. .

Dispersion Measure Variation of Repeating Fast Radio Burst Sources

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Yuan-Pei; Zhang, Bing, E-mail: yypspore@gmail.com, E-mail: zhang@physics.unlv.edu

The repeating fast radio burst (FRB) 121102 was recently localized in a dwarf galaxy at a cosmological distance. The dispersion measure (DM) derived for each burst from FRB 121102 so far has not shown significant evolution, even though an apparent increase was recently seen with newly detected VLA bursts. It is expected that more repeating FRB sources may be detected in the future. In this work, we investigate a list of possible astrophysical processes that might cause DM variation of a particular FRB source. The processes include (1) cosmological scale effects such as Hubble expansion and large-scale structure fluctuations; (2)more » FRB local effects such as gas density fluctuation, expansion of a supernova remnant (SNR), a pulsar wind nebula, and an H ii region; and (3) the propagation effect due to plasma lensing. We find that the DM variations contributed by the large-scale structure are extremely small, and any observable DM variation is likely caused by the plasma local to the FRB source. In addition to mechanisms that decrease DM over time, we suggest that an FRB source in an expanding SNR around a nearly neutral ambient medium during the deceleration (Sedov–Taylor and snowplow) phases or in a growing H ii region can increase DM. Some effects (e.g., an FRB source moving in an H ii region or plasma lensing) can produce either positive or negative DM variations. Future observations of DM variations of FRB 121102 and other repeating FRB sources can provide important clues regarding the physical origin of these sources.« less

Spatiotemporal variations in litter mass and their relationships with climate in temperate grassland: A case study from Xilingol grassland, Inner Mongolia (China)

NASA Astrophysics Data System (ADS)

Ren, Hongrui; Zhang, Bei

2018-02-01

Clarifying spatiotemporal variations of litter mass and their relationships with climate factors will advance our understanding of ecosystem structure and functioning in grasslands. Our objective is to investigate the spatiotemporal variations of litter mass in the growing season and their relationships with precipitation and temperature in the Xilingol grassland using MOD09A1 data. With widely used STI (simple tillage index), we firstly estimated the litter mass of Xilingol grassland in the growing season from 2000 to 2014. Then we investigated the variations of litter mass in the growing season at regional and site scales. We further explored the spatiotemporal relationships between litter mass and precipitation and temperature at both scales. The litter mass increased with increasing mean annual precipitation and decreasing mean annual temperature at regional scale. The variations of litter mass at given sites followed quadratic function curves in the growing season, and litter mass generally attained maximums between August 1 and September 1. Positive spatial relationship was observed between litter mass variations and precipitation, and negative spatial relationship was found between litter mass variations and temperature in the growing season. There was no significant relationship between inter-annual variations of litter mass and precipitation and temperature at given sites. Results illustrate that precipitation and temperature are important drivers in shaping ecosystem functioning as reflected in litter mass at regional scale in the Xilingol grassland. Our findings also suggest the action of distinct mechanism in controlling litter mass variations at regional and sites scales.

3D Structure of Iran and Surrounding Areas From The Simultaneous Inversion of Complementary Geophysical Observations

NASA Astrophysics Data System (ADS)

Ammon, C. J.; Maceira, M.; Cleveland, M.

2010-12-01

We present a three-dimensional seismic-structure model of the Arabian-Eurasian collision zone obtained via simultaneous, joint inversion of surface-wave dispersion measurements, teleseismic P-wave receiver functions, and gravity observations. We use a simple, approximate relationship between density and seismic velocities so that the three data sets may be combined in a single inversion. The sensitivity of the different data sets are well known: surface waves provide information on the smooth variations in elastic properties, receiver functions provide information on abrupt velocity contrasts, and gravity measurements provide information on broad-wavenumber shallow density variations and long-wavenumber components of deeper density structures. The combination of the data provides improved resolution of shallow-structure variations, which in turn help produce the smooth features at depth with less contamination from the strong heterogeneity often observed in the upper crust. We also explore geologically based smoothness constraints to help resolve sharp features in the underlying shallow 3D structure. Our focus is on the region surrounding Iran from east Turkey and Iraq in the west, to Pakistan and Afghanistan in the east. We use Bouguer gravity anomalies derived from the global gravity model extracted from the GRACE satellite mission. Surface-wave dispersion velocities in the period range between 7 and 150 s are taken from previously published tomographic maps for the region. Preliminary results show expected strong variations in the Caspian region as well as the deep sediment regions of the Persian Gulf. Regions constrained with receiver-function information generally show sharper crust-mantle boundary structure than that obtained by inversion of the surface waves alone (with thin layers and smoothing constraints). Final results of the simultaneous inversion will help us to better understand one of the most prominent examples of continental collision. Such models also provide an important starting model for time-consuming and fully 3D inversions.

SNPs in the 5'-regulatory region of the tyrosinase gene do not affect plumage color in ducks (Anas platyrhynchos).

PubMed

Zhang, N N; Hu, J W; Liu, H H; Xu, H Y; He, H; Li, L

2015-12-29

Tyrosinase, encoded by the TYR gene, is the rate-limiting enzyme in the production of melanin pigment. In this study, plumage color separation was observed in Cherry Valley duck line D and F1 and F2 hybrid generations of Liancheng white ducks. Gene sequencing and bioinformatic analysis were applied to the 5'-regulatory region of TYR, to explore the connection between TYR sequence variation and duck plumage color. Four SNPs were found in the 5'-regulatory region. The SNPs were in tight linkage and formed three haplotypes. However, the genotype distribution in groups with different plumage color was not significantly different, and there were no changes in the transcription factor binding sites between the different genotypes. In conclusion, these SNP variations may not cause the differences in feather color observed in this test group.

Comparision between crustal density and velocity variations in Southern California

USGS Publications Warehouse

Langenheim, V.E.; Hauksson, E.

2001-01-01

We predict gravity from a three-dimensional Vp model of the upper crust and compare it to the observed isostatic residual gravity field. In general this comparison shows that the isostatic residual gravity field reflects the density variations in the upper to middle crust. Both data sets show similar density variations for the upper crust in areas such as the Peninsular Ranges and the Los Angeles basin. Both show similar variations across major faults, such as the San Andreas and Garlock faults in the Mojave Desert. The difference between the two data sets in regions such as the Salton Trough, the Eastern California Shear Zone, and the eastern Ventura basin (where depth to Moho is <30 km), however, suggests high-density middle to lower crust beneath these regions. Hence the joint interpretation of these data sets improves the depth constraints of crustal density variations.

Development and Validation of the Whole Atmosphere Community Climate Model With Thermosphere and Ionosphere Extension (WACCM-X 2.0)

NASA Astrophysics Data System (ADS)

Liu, Han-Li; Bardeen, Charles G.; Foster, Benjamin T.; Lauritzen, Peter; Liu, Jing; Lu, Gang; Marsh, Daniel R.; Maute, Astrid; McInerney, Joseph M.; Pedatella, Nicholas M.; Qian, Liying; Richmond, Arthur D.; Roble, Raymond G.; Solomon, Stanley C.; Vitt, Francis M.; Wang, Wenbin

2018-02-01

Key developments have been made to the NCAR Whole Atmosphere Community Climate Model with thermosphere and ionosphere extension (WACCM-X). Among them, the most important are the self-consistent solution of global electrodynamics, and transport of O+ in the F-region. Other ionosphere developments include time-dependent solution of electron/ion temperatures, metastable O+ chemistry, and high-cadence solar EUV capability. Additional developments of the thermospheric components are improvements to the momentum and energy equation solvers to account for variable mean molecular mass and specific heat, a new divergence damping scheme, and cooling by O(3P) fine structure. Simulations using this new version of WACCM-X (2.0) have been carried out for solar maximum and minimum conditions. Thermospheric composition, density, and temperatures are in general agreement with measurements and empirical models, including the equatorial mass density anomaly and the midnight density maximum. The amplitudes and seasonal variations of atmospheric tides in the mesosphere and lower thermosphere are in good agreement with observations. Although global mean thermospheric densities are comparable with observations of the annual variation, they lack a clear semiannual variation. In the ionosphere, the low-latitude E × B drifts agree well with observations in their magnitudes, local time dependence, seasonal, and solar activity variations. The prereversal enhancement in the equatorial region, which is associated with ionospheric irregularities, displays patterns of longitudinal and seasonal variation that are similar to observations. Ionospheric density from the model simulations reproduces the equatorial ionosphere anomaly structures and is in general agreement with observations. The model simulations also capture important ionospheric features during storms.

Spatio-temporal variation in chemical characteristics of PM10 over Indo Gangetic Plain of India.

PubMed

Sharma, S K; Mandal, T K; Srivastava, M K; Chatterjee, A; Jain, Srishti; Saxena, M; Singh, B P; Saraswati; Sharma, A; Adak, A; K Ghosh, S

2016-09-01

The paper presents the spatio-temporal variation of chemical compositions (organic carbon (OC), elemental carbon (EC), and water-soluble inorganic ionic components (WSIC)) of particulate matter (PM10) over three locations (Delhi, Varanasi, and Kolkata) of Indo Gangetic Plain (IGP) of India for the year 2011. The observational sites are chosen to represent the characteristics of upper (Delhi), middle (Varanasi), and lower (Kolkata) IGP regions as converse to earlier single-station observation. Average mass concentration of PM10 was observed higher in the middle IGP (Varanasi 206.2 ± 77.4 μg m(-3)) as compared to upper IGP (Delhi 202.3 ± 74.3 μg m(-3)) and lower IGP (Kolkata 171.5 ± 38.5 μg m(-3)). Large variation in OC values from 23.57 μg m(-3) (Delhi) to 12.74 μg m(-3) (Kolkata) indicating role of formation of secondary aerosols, whereas EC have not shown much variation with maximum concentration over Delhi (10.07 μg m(-3)) and minimum over Varanasi (7.72 μg m(-3)). As expected, a strong seasonal variation was observed in the mass concentration of PM10 as well as in its chemical composition over the three locations. Principal component analysis (PCA) identifies the contribution of secondary aerosol, biomass burning, fossil fuel combustion, vehicular emission, and sea salt to PM10 mass concentration at the observational sites of IGP, India. Backward trajectory analysis indicated the influence of continental type aerosols being transported from the Bay of Bengal, Pakistan, Afghanistan, Rajasthan, Gujarat, and surrounding areas to IGP region.

Exploring a Variable-Resolution Approach for Simulating Regional Climate in the Rocky Mountain Region Using the VR-CESM

NASA Astrophysics Data System (ADS)

Wu, Chenglai; Liu, Xiaohong; Lin, Zhaohui; Rhoades, Alan M.; Ullrich, Paul A.; Zarzycki, Colin M.; Lu, Zheng; Rahimi-Esfarjani, Stefan R.

2017-10-01

The reliability of climate simulations and projections, particularly in the regions with complex terrains, is greatly limited by the model resolution. In this study we evaluate the variable-resolution Community Earth System Model (VR-CESM) with a high-resolution (0.125°) refinement over the Rocky Mountain region. The VR-CESM results are compared with observations, as well as CESM simulation at a quasi-uniform 1° resolution (UNIF) and Canadian Regional Climate Model version 5 (CRCM5) simulation at a 0.11° resolution. We find that VR-CESM is effective at capturing the observed spatial patterns of temperature, precipitation, and snowpack in the Rocky Mountains with the performance comparable to CRCM5, while UNIF is unable to do so. VR-CESM and CRCM5 simulate better the seasonal variations of precipitation than UNIF, although VR-CESM still overestimates winter precipitation whereas CRCM5 and UNIF underestimate it. All simulations distribute more winter precipitation along the windward (west) flanks of mountain ridges with the greatest overestimation in VR-CESM. VR-CESM simulates much greater snow water equivalent peaks than CRCM5 and UNIF, although the peaks are still 10-40% less than observations. Moreover, the frequency of heavy precipitation events (daily precipitation ≥ 25 mm) in VR-CESM and CRCM5 is comparable to observations, whereas the same events in UNIF are an order of magnitude less frequent. In addition, VR-CESM captures the observed occurrence frequency and seasonal variation of rain-on-snow days and performs better than UNIF and CRCM5. These results demonstrate the VR-CESM's capability in regional climate modeling over the mountainous regions and its promising applications for climate change studies.

Latitudinal variation of speed and mass flux in the acceleration region of the solar wind inferred from spectral broadening measurements

NASA Technical Reports Server (NTRS)

Woo, Richard; Goldstein, Richard M.

1994-01-01

Spectral broadening measurements conducted at S-band (13-cm wavelength) during solar minimum conditions in the heliocentric distance range of 3-8 R(sub O) by Mariner 4, Pioneer 10, Mariner 10, Helios 1, Helios 2, and Viking have been combined to reveal a factor of 2.6 reduction in bandwidth from equator to pole. Since spectral broadening bandwidth depends on electron density fluctuation and solar wind speed, and latitudinal variation of the former is available from coherence bandwidth measurements, the remote sensing spectral broadening measurements provide the first determination of the latitudinal variation of solar wind speed in the acceleration region. When combined with electron density measurements deduced from white-light coronagraphs, this result also leads to the first determination of the latitudinal variation of mass flux in the acceleration region. From equator to pole, solar wind speed increases by a factor of 2.2, while mass flux decreases by a factor of 2.3. These results are consistent with measurements of solar wind speed by multi-station intensity scintillation measurements, as well as measurements of mass flux inferred from Lyman alpha observations, both of which pertain to the solar wind beyond 0.5 AU. The spectral broadening observations, therefore, strengthen earlier conclusions about the latitudinal variation of solar wind speed and mass flux, and reinforce current solar coronal models and their implications for solar wind acceleration and solar wind modeling.

Landscape genetics of Schistocephalus solidus parasites in threespine stickleback (Gasterosteus aculeatus) from Alaska.

PubMed

Sprehn, C Grace; Blum, Michael J; Quinn, Thomas P; Heins, David C

2015-01-01

The nature of gene flow in parasites with complex life cycles is poorly understood, particularly when intermediate and definitive hosts have contrasting movement potential. We examined whether the fine-scale population genetic structure of the diphyllobothriidean cestode Schistocephalus solidus reflects the habits of intermediate threespine stickleback hosts or those of its definitive hosts, semi-aquatic piscivorous birds, to better understand complex host-parasite interactions. Seventeen lakes in the Cook Inlet region of south-central Alaska were sampled, including ten in the Matanuska-Susitna Valley, five on the Kenai Peninsula, and two in the Bristol Bay drainage. We analyzed sequence variation across a 759 bp region of the mitochondrial DNA (mtDNA) cytochrome oxidase I region for 1,026 S. solidus individuals sampled from 2009-2012. We also analyzed allelic variation at 8 microsatellite loci for 1,243 individuals. Analysis of mtDNA haplotype and microsatellite genotype variation recovered evidence of significant population genetic structure within S. solidus. Host, location, and year were factors in structuring observed genetic variation. Pairwise measures revealed significant differentiation among lakes, including a pattern of isolation-by-distance. Bayesian analysis identified three distinct genotypic clusters in the study region, little admixture within hosts and lakes, and a shift in genotype frequencies over time. Evidence of fine-scale population structure in S. solidus indicates that movement of its vagile, definitive avian hosts has less influence on gene flow than expected based solely on movement potential. Observed patterns of genetic variation may reflect genetic drift, behaviors of definitive hosts that constrain dispersal, life history of intermediate hosts, and adaptive specificity of S. solidus to intermediate host genotype.

Absolute Humidity and the Seasonality of Influenza (Invited)

NASA Astrophysics Data System (ADS)

Shaman, J. L.; Pitzer, V.; Viboud, C.; Grenfell, B.; Goldstein, E.; Lipsitch, M.

2010-12-01

Much of the observed wintertime increase of mortality in temperate regions is attributed to seasonal influenza. A recent re-analysis of laboratory experiments indicates that absolute humidity strongly modulates the airborne survival and transmission of the influenza virus. Here we show that the onset of increased wintertime influenza-related mortality in the United States is associated with anomalously low absolute humidity levels during the prior weeks. We then use an epidemiological model, in which observed absolute humidity conditions temper influenza transmission rates, to successfully simulate the seasonal cycle of observed influenza-related mortality. The model results indicate that direct modulation of influenza transmissibility by absolute humidity alone is sufficient to produce this observed seasonality. These findings provide epidemiological support for the hypothesis that absolute humidity drives seasonal variations of influenza transmission in temperate regions. In addition, we show that variations of the basic and effective reproductive numbers for influenza, caused by seasonal changes in absolute humidity, are consistent with the general timing of pandemic influenza outbreaks observed for 2009 A/H1N1 in temperate regions. Indeed, absolute humidity conditions correctly identify the region of the United States vulnerable to a third, wintertime wave of pandemic influenza. These findings suggest that the timing of pandemic influenza outbreaks is controlled by a combination of absolute humidity conditions, levels of susceptibility and changes in population mixing and contact rates.

Effects of variations of stage and flux at different frequencies on the estimates using river stage tomography

NASA Astrophysics Data System (ADS)

Wang, Y. L.; Yeh, T. C. J.; Wen, J. C.

2017-12-01

This study is to investigate the ability of river stage tomography to estimate the spatial distribution of hydraulic transmissivity (T), storage coefficient (S), and diffusivity (D) in groundwater basins using information of groundwater level variations induced by periodic variations of stream stage, and infiltrated flux from the stream boundary. In order to accomplish this objective, the sensitivity and correlation of groundwater heads with respect to the hydraulic properties is first conducted to investigate the spatial characteristics of groundwater level in response to the stream variations at different frequencies. Results of the analysis show that the spatial distributions of the sensitivity of heads at an observation well in response to periodic river stage variations are highly correlated despite different frequencies. On the other hand, the spatial patterns of the sensitivity of the observed head to river flux boundaries at different frequencies are different. Specifically, the observed head is highly correlated with T at the region between the stream and observation well when the high-frequency periodic flux is considered. On the other hand, it is highly correlated with T at the region between monitoring well and the boundary opposite to the stream when the low-frequency periodic flux is prescribed to the stream. We also find that the spatial distributions of the sensitivity of observed head to S variation are highly correlated with all frequencies in spite of heads or fluxes stream boundary. Subsequently, the differences of the spatial correlations of the observed heads to the hydraulic properties under the head and flux boundary conditions are further investigated by an inverse model (i.e., successive stochastic linear estimator). This investigation uses noise-free groundwater and stream data of a synthetic aquifer, where aquifer heterogeneity is known exactly. The ability of river stage tomography is then tested with these synthetic data sets to estimate T, S, and D distribution. The results reveal that boundary flux variations with different frequencies contain different information about the aquifer characteristics while the head boundary does not.

Photoelectron energy loss and spectral features deduced by the plasma line technique. [in topside F region

NASA Technical Reports Server (NTRS)

Abreu, V. J.; Carlson, H. C.

1977-01-01

Plasma line data gathered at the Arecibo Observatory are used to examine relative variations in topside F region differential photoelectron fluxes in the 5- to 20-eV range. A spectral feature not found in present theoretically calculated spectra is noted near 15 eV. A new approach to the interpretation of the measured spectra is taken, which allows a qualitative estimate of the relative importance of different energy loss mechanisms. The altitude variation of the observed photoelectron flux energy spectra at the higher altitudes (above 350 km) and the lower energies (less than 10 eV) agrees quantitatively with the expected variation of the spectrum.

Space observations of the variability of solar irradiance in the near and far ultraviolet

NASA Technical Reports Server (NTRS)

Heath, D. F.

1972-01-01

Satellite observations of the ultraviolet solar irradiance in selected wavelength bands between 1200 and 3000 a were made continuously by photometers consisting of broad-band sensors operated on Numbus 3 and 4 which were launched in April 1969 and 1970. In addition, spectrophotometer measurements of the solar irradiance were made with a dispersive instrument at 12 selected wavelengths from 2550 to 3400 a with a 10 a bandpass on Nimbus 4. Variations of the solar irradiance associated with the solar rotational period were observed since the launch of Nimbus 3. These variations are apparently associated with two source regions separated by about 180 deg in solar longitude. The change in irradiance with solar rotation was found to increase with decreasing wavelengths. Different types of the observed variations in uv solar irradiance can be classified in accordance with characteristics times, e.g. in the order of increasing periods as follows: (1)flare associated enhancements (2) 27-day variations due to solar rotation; (3) a possible biennial effect; and (4) long term variations associated with the 11-year solar cycle.

Observing Traveling Ionospheric Disturbances Caused by Tsunamis Using GPS TEC Measurements

NASA Technical Reports Server (NTRS)

Galvan, David A.; Komjathy, Attila; Hickey, Michael; Foster, James; Mannucci, Anthony J.

2010-01-01

Ground-based Global Positioning System (GPS) measurements of ionospheric Total Electron Content (TEC) show variations consistent with atmospheric internal gravity waves caused by ocean tsunamis following two recent seismic events: the American Samoa earthquake of September 29, 2009, and the Chile earthquake of February 27, 2010. Fluctuations in TEC correlated in time, space, and wave properties with these tsunamis were observed in TEC estimates processed using JPL's Global Ionospheric Mapping Software. These TEC estimates were band-pass filtered to remove ionospheric TEC variations with wavelengths and periods outside the typical range of internal gravity waves caused by tsunamis. Observable variations in TEC appear correlated with the tsunamis in certain locations, but not in others. Where variations are observed, the typical amplitude tends to be on the order of 1% of the background TEC value. Variations with amplitudes 0.1 - 0.2 TECU are observable with periods and timing affiliated with the tsunami. These observations are compared to estimates of expected tsunami-driven TEC variations produced by Embry Riddle Aeronautical University's Spectral Full Wave Model, an atmosphere-ionosphere coupling model, and found to be in good agreement in some locations, though there are cases when the model predicts an observable tsunami-driven signature and none is observed. These TEC variations are not always seen when a tsunami is present, but in these two events the regions where a strong ocean tsunami was observed did coincide with clear TEC observations, while a lack of clear TEC observations coincided with smaller tsunami amplitudes. There exists the potential to apply these detection techniques to real-time GPS TEC data, providing estimates of tsunami speed and amplitude that may be useful for early warning systems.

Elastic and anelastic structure of the lowermost mantle beneath the Western Pacific using waveform inversion

NASA Astrophysics Data System (ADS)

Konishi, K.; Deschamps, F.; Fuji, N.

2015-12-01

We investigate quasi-2D elastic and anelastic structure of the lowermost mantle beneath the Western Pacific by inverting S and ScS waveforms. The transverse component data were obtained from F-net for 32 deep sources beneath Tonga and Fiji, filtered between 12.5 and 200 s. We observe a regional variation of S and ScS arrival times and amplitude ratio, according to which we divide our region of interest into four sub-regions and perform 1D waveform inversion for S-wave velocity and Qμ value simultaneously. We find S-shaped structure of S-wave velocity beneath the whole region with sub-regional variation of S-wave velocity peak depths, which can explain regional difference in travel times. Qμ structure varies with sub-regions as well, but the physical interpretation has not yet done.

Human Papillomavirus Type 6 and 11 Genetic Variants Found in 71 Oral and Anogenital Epithelial Samples from Australia

PubMed Central

Danielewski, Jennifer A.; Garland, Suzanne M.; McCloskey, Jenny; Hillman, Richard J.; Tabrizi, Sepehr N.

2013-01-01

Genetic variation of 49 human papillomavirus (HPV) 6 and 22 HPV11 isolates from recurrent respiratory papillomatosis (RRP) (n = 17), genital warts (n = 43), anal cancer (n = 6) and cervical neoplasia cells (n = 5), was determined by sequencing the long control region (LCR) and the E6 and E7 genes. Comparative analysis of genetic variability was examined to determine whether different disease states resulting from HPV6 or HPV11 infection cluster into distinct variant groups. Sequence variation analysis of HPV6 revealed that isolates cluster into variants within previously described HPV6 lineages, with the majority (65%) clustering to HPV6 sublineage B1 across the three genomic regions examined. Overall 72 HPV6 and 25 HPV11 single nucleotide variations, insertions and deletions were observed within samples examined. In addition, missense alterations were observed in the E6/E7 genes for 6 HPV6 and 5 HPV11 variants. No nucleotide variations were identified in any isolates at the four E2 binding sites for HPV6 or HPV11, nor were any isolates found to be identical to the HPV6 lineage A or HPV11 sublineage A1 reference genomes. Overall, a high degree of sequence conservation was observed between isolates across each of the regions investigated for both HPV6 and HPV11. Genetic variants identified a slight association with HPV6 and anogenital lesions (p = 0.04). This study provides important information on the genetic diversity of circulating HPV 6 and HPV11 variants within the Australian population and supports the observation that the majority of HPV6 isolates cluster to the HPV6 sublineage B1 with anogenital lesions demonstrating an association with this sublineage (p = 0.02). Comparative analysis of Australian isolates for both HPV6 and HPV11 to those from other geographical regions based on the LCR revealed a high degree of sequence similarity throughout the world, confirming previous observations that there are no geographically specific variants for these HPV types. PMID:23691108

Sensitivity of simulated maize crop yields to regional climate in the Southwestern United States

NASA Astrophysics Data System (ADS)

Kim, S.; Myoung, B.; Stack, D.; Kim, J.; Hatzopoulos, N.; Kafatos, M.

2013-12-01

The sensitivity of maize yield to the regional climate in the Southwestern United States (SW US) has been investigated by using a crop-yield simulation model (APSIM) in conjunction with meteorological forcings (daily minimum and maximum temperature, precipitation, and radiation) from the North American Regional Reanalysis (NARR) dataset. The primary focus of this study is to look at the effects of interannual variations of atmospheric components on the crop productivity in the SW US over the 21-year period (1991 to 2011). First of all, characteristics and performance of APSIM was examined by comparing simulated maize yields with observed yields from United States Department of Agriculture (USDA) and the leaf-area index (LAI) from MODIS satellite data. Comparisons of the simulated maize yield with the available observations show that the crop model can reasonably reproduce observed maize yields. Sensitivity tests were performed to assess the relative contribution of each climate driver to regional crop yield. Sensitivity experiments show that potential crop production responds nonlinearly to climate drivers and the yield sensitivity varied among geographical locations depending on their mean climates. Lastly, a detailed analysis of both the spatial and temporal variations of each climate driver in the regions where maize is actually grown in three states (CA, AZ, and NV) in the SW US was performed.

Regional variation in coronary heart disease mortality trends in Portugal, 1981-2012.

PubMed

Araújo, Carla; Pereira, Marta; Viana, Marta; Rocha, Olga Laszczyńska; Bennett, Kathleen; Lunet, Nuno; Azevedo, Ana

2016-12-01

Information is scarce about the geographic variation in time trends of mortality from coronary heart disease (CHD). We aimed to describe trends in death rates, absolute number of deaths and years of life lost (YLL) due to CHD among men and women in Portugal, by region, from 1981 to 2012. The age-standardized mortality rates from CHD were estimated by sex and region. We used joinpoint regression analysis to calculate the annual percent change (APC) in mortality and to identify points of significant change in the trend. The YLL due to premature mortality for CHD were computed using the Global Burden of Disease method. The age-adjusted mortality from CHD decreased between 1981 and 2012, both in men and women, but with significantly different APC by region. Smaller declines in rates were observed in Alentejo (men: APC 1993-2012: -2.4%; women: APC 1991-2012: -2.4%). The greatest decline was observed in Madeira between 2003 and 2012, in men (APC: -7.6%) and women (APC: -9.7%). The decline in rates in Algarve started only after 2003, whereas it was consistent from 1981 in the North and started in the 1990s in most other regions. A decrease in the number of deaths was only observed after 2000. The YLL from CHD decreased from 1981 to 2012, mainly after 2000. In Portugal, between 1981 and 2012, relative declines of CHD mortality indicators were different by geographic region. Consistent decreases in mortality rates were only observed in the Centre, Lisbon and North, the most populated and urbanized regions. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

A multi-wavelength study of pre-main sequence stars in the Taurus-Auriga star-forming region

NASA Astrophysics Data System (ADS)

Guenther, E. W.; Stelzer, B.; Neuhäuser, R.; Hillwig, T. C.; Durisen, R. H.; Menten, K. M.; Greimel, R.; Barwig, H.; Englhauser, J.; Robb, R. M.

2000-05-01

Although many lowmass pre-main sequence stars are strong X-ray sources, the origin of the X-ray emission is not well known. Since these objects are variable at all frequencies, simultaneous observations in X-rays and in other wavelengths are able to constrain the properties of the X-ray emitting regions. In this paper, we report quasi-simultaneous observations in X-rays, the optical, and the radio regime for classical and weak-line T Tauri stars from the Taurus-Auriga star-forming region. We find that all detected T Tauri stars show significant night-to-night variations of the X-ray emission. For three of the stars, FM Tau and CW Tau, both classical T Tauri stars, and V773 Tau, a weak-line T Tauri star, the variations are especially large. From observations taken simultaneously, we also find that there is some correspondence between the strength of Hα and the X-ray brightness in V773 Tau. The lack of a strong correlation leads us to conclude that the X-ray emission of V773 Tau is not a superposition of flares. However, we suggest that a weak correlation occurs because chromospherically active regions and regions of strong X-ray emission are generally related. V773 Tau was detected at 8.46 GHz as a weakly circularly polarised but highly variable source. We also find that the X-ray emission and the equivalent width of Hα remained unchanged, while large variations of the flux density in the radio regime were observed. This clearly indicates that the emitting regions are different. Using optical spectroscopy we detected a flare in Hα and event which showed a flare-like light-curve of the continuum brightness in FM Tau. However, ROSAT did not observe the field at the times of these flares. Nevertheless, an interesting X-ray event was observed in V773 Tau, during which the flux increased for about 8 hours and then decreased back to the same level in 5 hours. We interpret this as a long-duration event similar to those seen on the sun and other active stars. In the course of the observations, we discovered a new weak-line T Tauri star, GSC-1839-5674. Results are also presented for several other stars in the ROSAT field.

Indication of the Hanle Effect by Comparing the Scattering Polarization Observed by CLASP in the Ly α and Si iii 120.65 nm Lines

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ishikawa, R.; Kubo, M.; Kano, R.

The Chromospheric Lyman-Alpha Spectro-Polarimeter is a sounding rocket experiment that has provided the first successful measurement of the linear polarization produced by scattering processes in the hydrogen Ly α line (121.57 nm) radiation of the solar disk. In this paper, we report that the Si iii line at 120.65 nm also shows scattering polarization and we compare the scattering polarization signals observed in the Ly α and Si iii lines in order to search for observational signatures of the Hanle effect. We focus on four selected bright structures and investigate how the U / I spatial variations vary between themore » Ly α wing, the Ly α core, and the Si iii line as a function of the total unsigned photospheric magnetic flux estimated from Solar Dynamics Observatory /Helioseismic and Magnetic Imager observations. In an internetwork region, the Ly α core shows an antisymmetric spatial variation across the selected bright structure, but it does not show it in other more magnetized regions. In the Si iii line, the spatial variation of U / I deviates from the above-mentioned antisymmetric shape as the total unsigned photospheric magnetic flux increases. A plausible explanation of this difference is the operation of the Hanle effect. We argue that diagnostic techniques based on the scattering polarization observed simultaneously in two spectral lines with very different sensitivities to the Hanle effect, like Ly α and Si iii, are of great potential interest for exploring the magnetism of the upper solar chromosphere and transition region.« less

Genetic variation of piperidine alkaloids in Pinus ponderosa: a common garden study

PubMed Central

Gerson, Elizabeth A.; Kelsey, Rick G.; St Clair, J. Bradley

2009-01-01

Background and Aims Previous measurements of conifer alkaloids have revealed significant variation attributable to many sources, environmental and genetic. The present study takes a complementary and intensive, common garden approach to examine genetic variation in Pinus ponderosa var. ponderosa alkaloid production. Additionally, this study investigates the potential trade-off between seedling growth and alkaloid production, and associations between topographic/climatic variables and alkaloid production. Methods Piperidine alkaloids were quantified in foliage of 501 nursery seedlings grown from seed sources in west-central Washington, Oregon and California, roughly covering the western half of the native range of ponderosa pine. A nested mixed model was used to test differences among broad-scale regions and among families within regions. Alkaloid concentrations were regressed on seedling growth measurements to test metabolite allocation theory. Likewise, climate characteristics at the seed sources were also considered as explanatory variables. Key Results Quantitative variation from seedling to seedling was high, and regional variation exceeded variation among families. Regions along the western margin of the species range exhibited the highest alkaloid concentrations, while those further east had relatively low alkaloid levels. Qualitative variation in alkaloid profiles was low. All measures of seedling growth related negatively to alkaloid concentrations on a natural log scale; however, coefficients of determination were low. At best, annual height increment explained 19·4 % of the variation in ln(total alkaloids). Among the climate variables, temperature range showed a negative, linear association that explained 41·8 % of the variation. Conclusions Given the wide geographic scope of the seed sources and the uniformity of resources in the seedlings' environment, observed differences in alkaloid concentrations are evidence for genetic regulation of alkaloid secondary metabolism in ponderosa pine. The theoretical trade-off with seedling growth appeared to be real, however slight. The climate variables provided little evidence for adaptive alkaloid variation, especially within regions. PMID:19010800

Temporal and Spatial Variations in the Twinning Rate in Norway.

PubMed

Fellman, Johan

2016-08-01

Strong geographical variations have been noted in the twinning rate (TWR). In general, the rate is high among people of African origin, intermediate among Europeans, and low among most Asiatic populations. In Europe, there tends to be a south-north cline, with a progressive increase in the TWR from south to north and a minimum around the Basque provinces. The highest TWRs in Europe have been found among the Nordic populations. Furthermore, within larger populations, small isolated subpopulations have been identified to have extreme, mainly high, TWRs. In the study of the temporal variation of the TWR in Norway, we consider the period from 1900 to 2014. The regional variation of the TWR in Norway is analyzed for the different counties for two periods, 1916-1926 and 1960-1988. Heterogeneity between the regional TWRs in Norway during 1916-1926 was found, but the goodness of fit for the alternative spatial models was only slight. The optimal regression model for the TWR in Norway has the longitude and its square as regressors. According to this model, the spatial variation is distributed in a west-east direction. For 1960-1988, no significant regional variation was observed. One may expect that the environmental and genetic differences between the counties in Norway have disappeared and that the regional TWRs have converged towards a common low level.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Voylov, D. N.; Griffin, P. J.; Mercado, B.

In this detailed analysis of the static structure factor S(Q) in several glass-forming liquids we show that the temperature variations of the width of the main diffraction peak Q(T ) correlate with the fragility of these liquids. Our observation suggests a direct connection between rather subtle structural changes and sharp slowing down of structural relaxation in glass-forming liquids. We also show that this observation can be rationalized using the Adam-Gibbs approach, through a connection between temperature variations of structural correlation length, lc 2 /Q, and the size of cooperatively rearranging regions.

Ionospheric electron heating associated with pulsating auroras: joint optical and PFISR observations

NASA Astrophysics Data System (ADS)

Liang, J.; Donovan, E.; Spanswick, E.; Reimer, A.; Hampton, D. L.; Varney, R. H.

2017-12-01

In a recent survey based upon Swarm satellite data, Liang et al. [2017] repeatedly identified a strong electron temperature (Te) enhancement associated with the pulsating aurora at Swarm altitudes ( 460 km). The observation of Te enhancement is not contingent upon whether the pulsating patch is "on" or "off" at the satellite traversal epoch. In this study, we use joint optical and Poker Flat Incoherent Scatter Radar (PFISR) observations to further investigate the 4D (space-time) variations of the Te enhancement in association with the pulsating aurora. In a long-lasting pulsating auroral event on 19 March 2015, we identify strong Te enhancements ( 600-1200 K) in the upper F-region ionosphere ( 300-600 km altitude) in conjunction to the passage of pulsating auroras over PFISR beams. The spatial-temporal variations of PFISR Te enhancement are found to generally conform to the variations of pulsating auroras. However, collocated meridian spectrograph observations suggest that the pulsating auroras of interest are composed of energetic electron precipitation with characteristic energy ≥10 keV, which is not supposed to be efficient in heating electrons in the upper F-region. On the other hand, only moderate (<27%) Ne enhancements are found in the upper F-region during the pulsating aurora and Te enhancement interval. There are also moderate Te enhancements ( 100 K) in the E-region accompanying the pulsating auroras, but no clue of Te enhancement is found in the lower F-region. Based upon the above observations and simulations using the model developed in Liang et al. [2017], we propose that thermal conduction from the topside ionosphere, led by magnetospheric heat fluxes, constitutes the most likely underlying mechanism for the upper F-region electron heating associated with pulsating auroras. Such magnetospheric heat fluxes may be pertinent to one long-hypothesized feature of pulsating auroras, namely the existence of an enhanced low-energy plasma population in magnetospheric magnetic flux tubes threading the pulsating auroral patch. Liang, J. B. Yang, E. Donovan, J. Burchill, and D. Knudsen (2017), Ionospheric electron heating associated with pulsating auroras: A Swarm survey and model simulation, JGRA53073, in press

Inter-annual and Long-term Temperature Variations in the Mesopause Region at High Latitudes Generated by the Stratospheric QBO

NASA Technical Reports Server (NTRS)

Mayr, Hans G.; Mengel, John G.; Huang, Frank T.

2007-01-01

The Numerical Spectral Model (NSM) simulates the Quasi-biennial Oscillation (QBO) that dominates the zonal circulation of the lower stratosphere at low latitudes. In the model, the QBO is generated with parameterized small-scale gravity waves (GW), which are partially augmented in 3D with planetary waves owing to baroclinic instability. Due to GW filtering, the QBO extends into the upper mesosphere, evident in UARS zonal wind and TIMED temperature measurements. While the QBO zonal winds are confined to equatorial latitudes, even in simulations with latitude-independent wave source, the associated temperature variations extend to high latitudes. The meridional circulation redistributes some of the QBO energy to focus it partially onto the Polar Regions. The resulting QBO temperature variations away from the equator tend to increase at higher altitudes to produce inter-annual variations that can exceed 5 K in the polar mesopause region -- and our 3D model simulations show that the effect is variable from year to year and can produce large differences between the two hemispheres, presumably due to interactions involving the seasonal variations. Modeling studies with the NSM have shown that long-term variations can also be generated by the QBO interacting with the seasonal cycles through OW node-filtering. A 30-month QBO, optimally synchronized by the 6-month Semi-Annual Oscillation (SAO), thus produces a 5-year or semi-decadal (SD) oscillation -- and observational evidence for that has been provided by a recent analysis of stratospheric NCEP data. In a simulation with the 2D version of the NSM, this SD oscillation extends into the upper mesosphere, and we present results to show that the related temperature variations could contribute significantly to the long-term variations of the polar mesopause region. Quasi-decadal variations could furthermore arise from the modeled solar cycle modulations of the QBO and 12-month annual oscillation. Our numerical results are discussed in the context of the observed low summer temperatures reproduced by the model, to demonstrate that the above interannual and long-term variations could contribute significantly to the climatology of Polar Mesospheric Clouds (PMC) investigated by the Aeronomy of Ice in the Mesosphere (AIM) mission.

Haplotypes and Sequence Variation in the Ovine Adiponectin Gene (ADIPOQ)

PubMed Central

An, Qing-Ming; Zhou, Hui-Tong; Hu, Jiang; Luo, Yu-Zhu; Hickford, Jon G. H.

2015-01-01

The adiponectin gene (ADIPOQ) plays an important role in energy homeostasis. In this study five separate regions (regions 1 to 5) of ovine ADIPOQ were analysed using PCR-SSCP. Four different PCR-SSCP patterns (A1-D1, A2-D2) were detected in region-1 and region-2, respectively, with seven and six SNPs being revealed. In region-3, three different patterns (A3-C3) and three SNPs were observed. Two patterns (A4-B4, A5-B5) and two and one SNPs were observed in region-4 and region-5, respectively. In total, nineteen SNPs were detected, with five of them in the coding region and two (c.46T/C and c.515G/A) putatively resulting in amino acid changes (p.Tyr16His and p.Lys172Arg). In region-1, -2 and -3 of 316 sheep from eight New Zealand breeds, variants A1, A2 and A3 were the most common, although variant frequencies differed in the eight breeds. Across region-1 and region-3, nine haplotypes were identified and haplotypes A1-A3, A1-C3, B1-A3 and B1-C3 were most common. These results indicate that the ADIPOQ gene is polymorphic and suggest that further analysis is required to see if the variation in the gene is associated with animal production traits. PMID:26610572

The adaptive evolution of the mammalian mitochondrial genome

PubMed Central

da Fonseca, Rute R; Johnson, Warren E; O'Brien, Stephen J; Ramos, Maria João; Antunes, Agostinho

2008-01-01

Background The mitochondria produce up to 95% of a eukaryotic cell's energy through oxidative phosphorylation. The proteins involved in this vital process are under high functional constraints. However, metabolic requirements vary across species, potentially modifying selective pressures. We evaluate the adaptive evolution of 12 protein-coding mitochondrial genes in 41 placental mammalian species by assessing amino acid sequence variation and exploring the functional implications of observed variation in secondary and tertiary protein structures. Results Wide variation in the properties of amino acids were observed at functionally important regions of cytochrome b in species with more-specialized metabolic requirements (such as adaptation to low energy diet or large body size, such as in elephant, dugong, sloth, and pangolin, and adaptation to unusual oxygen requirements, for example diving in cetaceans, flying in bats, and living at high altitudes in alpacas). Signatures of adaptive variation in the NADH dehydrogenase complex were restricted to the loop regions of the transmembrane units which likely function as protons pumps. Evidence of adaptive variation in the cytochrome c oxidase complex was observed mostly at the interface between the mitochondrial and nuclear-encoded subunits, perhaps evidence of co-evolution. The ATP8 subunit, which has an important role in the assembly of F0, exhibited the highest signal of adaptive variation. ATP6, which has an essential role in rotor performance, showed a high adaptive variation in predicted loop areas. Conclusion Our study provides insight into the adaptive evolution of the mtDNA genome in mammals and its implications for the molecular mechanism of oxidative phosphorylation. We present a framework for future experimental characterization of the impact of specific mutations in the function, physiology, and interactions of the mtDNA encoded proteins involved in oxidative phosphorylation. PMID:18318906

Nonlinear-regression groundwater flow modeling of a deep regional aquifer system

USGS Publications Warehouse

Cooley, Richard L.; Konikow, Leonard F.; Naff, Richard L.

1986-01-01

A nonlinear regression groundwater flow model, based on a Galerkin finite-element discretization, was used to analyze steady state two-dimensional groundwater flow in the areally extensive Madison aquifer in a 75,000 mi2 area of the Northern Great Plains. Regression parameters estimated include intrinsic permeabilities of the main aquifer and separate lineament zones, discharges from eight major springs surrounding the Black Hills, and specified heads on the model boundaries. Aquifer thickness and temperature variations were included as specified functions. The regression model was applied using sequential F testing so that the fewest number and simplest zonation of intrinsic permeabilities, combined with the simplest overall model, were evaluated initially; additional complexities (such as subdivisions of zones and variations in temperature and thickness) were added in stages to evaluate the subsequent degree of improvement in the model results. It was found that only the eight major springs, a single main aquifer intrinsic permeability, two separate lineament intrinsic permeabilities of much smaller values, and temperature variations are warranted by the observed data (hydraulic heads and prior information on some parameters) for inclusion in a model that attempts to explain significant controls on groundwater flow. Addition of thickness variations did not significantly improve model results; however, thickness variations were included in the final model because they are fairly well defined. Effects on the observed head distribution from other features, such as vertical leakage and regional variations in intrinsic permeability, apparently were overshadowed by measurement errors in the observed heads. Estimates of the parameters correspond well to estimates obtained from other independent sources.

Nonlinear-Regression Groundwater Flow Modeling of a Deep Regional Aquifer System

NASA Astrophysics Data System (ADS)

Cooley, Richard L.; Konikow, Leonard F.; Naff, Richard L.

1986-12-01

A nonlinear regression groundwater flow model, based on a Galerkin finite-element discretization, was used to analyze steady state two-dimensional groundwater flow in the areally extensive Madison aquifer in a 75,000 mi2 area of the Northern Great Plains. Regression parameters estimated include intrinsic permeabilities of the main aquifer and separate lineament zones, discharges from eight major springs surrounding the Black Hills, and specified heads on the model boundaries. Aquifer thickness and temperature variations were included as specified functions. The regression model was applied using sequential F testing so that the fewest number and simplest zonation of intrinsic permeabilities, combined with the simplest overall model, were evaluated initially; additional complexities (such as subdivisions of zones and variations in temperature and thickness) were added in stages to evaluate the subsequent degree of improvement in the model results. It was found that only the eight major springs, a single main aquifer intrinsic permeability, two separate lineament intrinsic permeabilities of much smaller values, and temperature variations are warranted by the observed data (hydraulic heads and prior information on some parameters) for inclusion in a model that attempts to explain significant controls on groundwater flow. Addition of thickness variations did not significantly improve model results; however, thickness variations were included in the final model because they are fairly well defined. Effects on the observed head distribution from other features, such as vertical leakage and regional variations in intrinsic permeability, apparently were overshadowed by measurement errors in the observed heads. Estimates of the parameters correspond well to estimates obtained from other independent sources.

Pan-North Pacific comparison of long-term variation in Neocalanus copepods based on stable isotope analysis

NASA Astrophysics Data System (ADS)

Chiba, Sanae; Sugisaki, Hiroya; Kuwata, Akira; Tadokoro, Kazuaki; Kobari, Toru; Yamaguchi, Atsushi; Mackas, David L.

2012-05-01

Regional differences in the mechanisms of temporal variation in the lower trophic levels in the western, central, and eastern subarctic North Pacific were studied using the nitrogen stable isotope ratio (δ15N) of the major copepod species, Neocalanus cristatus, Neocalanus flemingeri, and Neocalanus plumchrus. We used formalin-preserved specimens collected in the Oyashio region (OY), three sections from north to south along the 180° longitudinal line (180LineSA, TN, and TS), off Vancouver Island (Off-Van), and at Sta. P, during the periods of 1960-2000, 1979-1997, 1981-2007, and 1996-2007, respectively. The regional mean δ15N of the three species roughly corresponded to the surface nitrate distribution and the extent of its drawdown from winter to spring; it was higher in regions of larger seasonal drawdown as observed in the coastal regions OY and Off-Van (7-10‰), but lower in regions with less seasonal drawdown, such as in the offshore regions at St. P and stations along the 180Line (3-6‰). Time series analysis revealed possible region-specific mechanisms for temporal variation in Neocalanus δ15N. First, δ15N indicated shifts in feeding strategies between herbivorous to omnivorous/carnivorous at OY and 180LineSA, where δ15N tended to be lower in the years with warmer winters, suggesting that Neocalanus took advantage of enhanced phytoplankton production under favorable light availability due to increased stratification. Conversely, wind-induced latitudinal advection of surface water was considered to be the initial cause of interannual variation in Neocalanus δ15N at 180LineTN, 180LineTS, and Off-Van, where δ15N was higher in the years with strong southerly or westerly winds at 180LineTN and TS, and the Off-Van site. This suggests that pole-ward transport of relatively oligotrophic, southern water might enhance the uptake of the heavier isotope by phytoplankton, which Neocalanus feed upon. Another possibility at the Off-Van site, where high δ15N was observed (c.a., 8-10‰), is a switch in the Neocalanus feeding strategy induced by decreased phytoplankton availability. This study demonstrated the usefulness of zooplankton δ15N as an indicator of interannual variation in lower trophic level environments and food web structures, which are caused by region-specific mechanisms.

Variation of coda wave attenuation in the Alborz region and central Iran

NASA Astrophysics Data System (ADS)

Rahimi, H.; Motaghi, K.; Mukhopadhyay, S.; Hamzehloo, H.

2010-06-01

More than 340 earthquakes recorded by the Institute of Geophysics, University of Tehran (IGUT) short period stations from 1996 to 2004 were analysed to estimate the S-coda attenuation in the Alborz region, the northern part of the Alpine-Himalayan orogen in western Asia, and in central Iran, which is the foreland of this orogen. The coda quality factor, Qc, was estimated using the single backscattering model in frequency bands of 1-25 Hz. In this research, lateral and depth variation of Qc in the Alborz region and central Iran are studied. It is observed that in the Alborz region there is absence of significant lateral variation in Qc. The average frequency relation for this region is Qc = 79 +/- 2f1.07+/-0.08. Two anomalous high-attenuation areas in central Iran are recognized around the stations LAS and RAZ. The average frequency relation for central Iran excluding the values of these two stations is Qc = 94 +/- 2f0.97+/-0.12. To investigate the attenuation variation with depth, Qc value was calculated for 14 lapse times (25, 30, 35,... 90s) for two data sets having epicentral distance range R < 100 km (data set 1) and 100 < R < 200 km (data set 2) in each area. It is observed that Qc increases with depth. However, the rate of increase of Qc with depth is not uniform in our study area. Beneath central Iran the rate of increase of Qc is greater at depths less than 100 km compared to that at larger depths indicating the existence of a high attenuation anomalous structure under the lithosphere of central Iran. In addition, below ~180 km, the Qc value does not vary much with depth under both study areas, indicating the presence of a transparent mantle under them.

Understand the Air-Sea Coupling Processes in High Wind Conditions Using a Synthesized Data Analysis/modeling Approach

DTIC Science & Technology

2007-09-30

secondary gap outflow that appeared in COAMPS simulations ( Cherrett 2006). Figure 3d shows similar SST spatial variations as in Fig. 3c with slight... Cherrett , R. C. 2006: Observed and Simulated temporal and spatial variations of the gap outflow region, M.S. Thesis, Meteorology Department, Naval

Evidence for azimuthal variations of the oxygen-abundance gradient tracing the spiral structure of the galaxy HCG 91c

NASA Astrophysics Data System (ADS)

Vogt, F. P. A.; Pérez, E.; Dopita, M. A.; Verdes-Montenegro, L.; Borthakur, S.

2017-05-01

Context. The distribution of elements in galaxies forms an important diagnostic tool to characterize these systems' formation and evolution. This tool is, however, complex to use in practice, as galaxies are subject to a range of simultaneous physical processes active from pc to kpc scales. This renders observations of the full optical extent of galaxies down to sub-kpc scales essential. Aims: Using the WiFeS integral field spectrograph, we previously detected abrupt and localized variations in the gas-phase oxygen abundance of the spiral galaxy HCG 91c. Here, we follow-up on these observations to map HCG 91c's disk out to 2 Re at a resolution of 600 pc, and characterize the non-radial variations of the gas-phase oxygen abundance in the system. Methods: We obtained deep MUSE observations of the target under 0.6 arcsec seeing conditions. We perform both a spaxel-based and aperture-based analysis of the data to map the spatial variations of 12 +log (O/H) across the disk of the galaxy. Results: We confirm the presence of rapid variations of the oxygen abundance across the entire extent of the galaxy previously detected with WiFeS, for all azimuths and radii. The variations can be separated in two categories: a) localized and associated with individual H II regions; and b) extended over kpc scales, and occurring at the boundaries of the spiral structures in the galaxy. Conclusions: Our MUSE observations suggest that the enrichment of the interstellar medium in HGC 91c has proceeded preferentially along spiral structures, and less efficiently across them. Our dataset highlights the importance of distinguishing individual star-forming regions down to scales of a few 100 pc when using integral field spectrographs to spatially resolve the distribution of oxygen abundances in a given system, and accurately characterize azimuthal variations and intrinsic scatter. The movie associated to Fig. 8 is available at http://www.aanda.org

Geometrical and gravimetrical observations of the Aral Sea and its tributaries along with hydrological models

NASA Astrophysics Data System (ADS)

Singh, A.; Seitz, F.; Schwatke, C.; Güntner, A.

2012-04-01

Satellite altimetry is capable of measuring surface water level changes of large water bodies. This is especially interesting for regions where in-situ gauges are sparse or not available. Temporal variations of coastline and horizontal extent of a water body can be derived from optical remote sensing data. A joint analysis of both data types together with a digital elevation model allows for the estimation of water volume changes. Related variations of water mass map into the observations of the satellite gravity field mission GRACE. In this presentation, we demonstrate the application of heterogeneuous remote sensing methods for studying chages of water volume and mass of the Aral Sea and compare the results with respect to their consistency. Our analysis covers the period 2002-2011. In particular we deal with data from multi-mission radar and laser satellite altimetry that are analyzed in combination with coastlines from Landsat images. The resultant vertical and horizontal variations of the lake surface are geometrically intersected with the bathymetry of the Aral Sea in order to compute volumetric changes. These are transformed into variations of water mass that are subsequently compared with storage changes derived from GRACE satellite gravimetry. Hence we obtain a comprehensive picture of the hydrological changes in the region. Observations from all datasets correspond quite well with each other with respect to their temporal development. However, geometrically determined volume changes and mass changes observed by GRACE agree less well during years of heavy water inflow in to the Aral Sea from its southern tributary 'Amu Darya' since the GRACE signals are contaminated by the large mass of water stored in the river delta and prearalie region On the other hand, GRACE observations of the river basins of Syr Darya and Amu Dayra correspond very well with hydrological models and mass changes computed from the balance of precipitation, evaporation and runoff determined from the atmospheric-terrestrial water balance.

Strong variations in water vapor in the Asian Monsoon UTLS region observed during the 2017 StratoClim campaign

NASA Astrophysics Data System (ADS)

Moyer, E. J.; Clouser, B.; Sarkozy, L.; Gaeta, D. C.; Singer, C. E.

2017-12-01

The StratoClim campaign in July/August 2017 provided the first in-situ sampling in the UTLS region over the Asian monsoon. Preliminary results from high-precision water vapor measurements from a new instrument, the Chicago Water Isotope Spectrometer, imply substantial variation in water vapor above the local cold-point tropopause and above the 380 K potential temperature surface. Profiles across the cold-point tropopause and attendant variability appear to differ from those both in the Tropical Tropopause Layer in the deep tropics and in the North American Monsoon region. We discuss how these water vapor fluctuations relate to implied convective influence and variations in long-range transport. In at least some cases, enhanced water at high altitudes appears correlated with relative isotopic enhancement, suggesting convective influence. Although results at the time of writing are necessarily very preliminary, measurements suggest that the monsoon anticyclone region is characterized by dynamic transport and convective influence up to and beyond the local cold-point tropopause.

Effects of strong earthquakes in variations of electrical and meteorological parameters of the near-surface atmosphere in Kamchatka region

NASA Astrophysics Data System (ADS)

Smirnov, S. E.; Mikhailova, G. A.; Mikhailov, Yu. M.; Kapustina, O. V.

2017-09-01

The diurnal variations in electrical (quasistatic electric field and electrical conductivity) and meteorological (temperature, pressure, relative humidity of the atmosphere, and wind speed) parameters, measured simultaneously before strong earthquakes in Kamchatka region (November 15, 2006, M = 8.3; January 13, 2007, M = 8.1; January 30, 2016, M = 7.2), are studied for the first time in detail. It is found that a successively anomalous increase in temperature, despite the negative regular trend in these winter months, was observed in the period of six-seven days before the occurrences of earthquakes. An anomalous temperature increase led to the formation of "winter thunderstorm" conditions in the near-surface atmosphere of Kamchatka region, which was manifested in the appearance of an anomalous, type 2 electrical signal, the amplification of and intensive variations in electrical conductivity, heavy precipitation (snow showers), high relative humidity of air, storm winds, and pressure changes. With the weak flow of natural heat radiation in this season, the observed dynamics of electric and meteorological processes can likely be explained by the appearance of an additional heat source of seismic nature.

Comparative morphology of the scales of roundscale spearfish Tetrapturus georgii and white marlin Kajikia albida.

PubMed

Loose, E L; Hilton, E J; Graves, J E

2017-04-01

The comparative morphology of the scales of roundscale spearfish Tetrapturus georgii and white marlin Kajikia albida was investigated. In addition, variation in scale morphology across different body regions within each species was analysed. Although considerable morphological variation was observed among scales from different body regions in both species, scales of K. albida generally have pointed anterior ends, fewer posterior points and are more heavily imbricated than those of T. georgii, which are frequently rounded anteriorly, often have many posterior points and are separated farther within the skin. In all sampled body regions and individuals, scales of T. georgii are significantly broader and have a lower length-to-width aspect ratio than those of K. albida. Superficial to the scales are denticular plates, which are ossified formations occurring on the surface layer of the epidermis; these were observed and described for T. georgii, K. albida and blue marlin Makaira nigricans. Detailed scale descriptions allow for a more accurate characterization of the variation within and differences between these two species and could potentially be a valuable tool for investigating istiophorid systematics. © 2017 The Fisheries Society of the British Isles.

Regionalization based on spatial and seasonal variation in ground-level ozone concentrations across China.

PubMed

Cheng, Linjun; Wang, Shuai; Gong, Zhengyu; Li, Hong; Yang, Qi; Wang, Yeyao

2018-05-01

Owing to the vast territory of China and strong regional characteristic of ozone pollution, it's desirable for policy makers to have a targeted and prioritized regulation and ozone pollution control strategy in China based on scientific evidences. It's important to assess its current pollution status as well as spatial and temporal variation patterns across China. Recent advances of national monitoring networks provide an opportunity to insight the actions of ozone pollution. Here, we present rotated empirical orthogonal function (REOF) analysis that was used on studying the spatiotemporal characteristics of daily ozone concentrations. Based on results of REOF analysis in pollution seasons for 3years' observations, twelve regions with clear patterns were identified in China. The patterns of temporal variation of ozone in each region were separated well and different from each other, reflecting local meteorological, photochemical or pollution features. A rising trend in annual averaged Eight-hour Average Ozone Concentrations (O 3 -8hr) from 2014 to 2016 was observed for all regions, except for the Tibetan Plateau. The mean values of annual and 90 percentile concentrations for all 338 cities were 82.6±14.6 and 133.9±25.8μg/m 3 , respectively, in 2015. The regionalization results of ozone were found to be influenced greatly by terrain features, indicating significant terrain and landform effects on ozone spatial correlations. Among 12 regions, North China Plain, Huanghuai Plain, Central Yangtze River Plain, Pearl River Delta and Sichuan Basin were realized as priority regions for mitigation strategies, due to their higher ozone concentrations and dense population. Copyright © 2017. Published by Elsevier B.V.

Identification of Genomic Regions Associated with Phenotypic Variation between Dog Breeds using Selection Mapping

PubMed Central

Derrien, Thomas; Axelsson, Erik; Rosengren Pielberg, Gerli; Sigurdsson, Snaevar; Fall, Tove; Seppälä, Eija H.; Hansen, Mark S. T.; Lawley, Cindy T.; Karlsson, Elinor K.; Bannasch, Danika; Vilà, Carles; Lohi, Hannes; Galibert, Francis; Fredholm, Merete; Häggström, Jens; Hedhammar, Åke; André, Catherine; Lindblad-Toh, Kerstin; Hitte, Christophe; Webster, Matthew T.

2011-01-01

The extraordinary phenotypic diversity of dog breeds has been sculpted by a unique population history accompanied by selection for novel and desirable traits. Here we perform a comprehensive analysis using multiple test statistics to identify regions under selection in 509 dogs from 46 diverse breeds using a newly developed high-density genotyping array consisting of >170,000 evenly spaced SNPs. We first identify 44 genomic regions exhibiting extreme differentiation across multiple breeds. Genetic variation in these regions correlates with variation in several phenotypic traits that vary between breeds, and we identify novel associations with both morphological and behavioral traits. We next scan the genome for signatures of selective sweeps in single breeds, characterized by long regions of reduced heterozygosity and fixation of extended haplotypes. These scans identify hundreds of regions, including 22 blocks of homozygosity longer than one megabase in certain breeds. Candidate selection loci are strongly enriched for developmental genes. We chose one highly differentiated region, associated with body size and ear morphology, and characterized it using high-throughput sequencing to provide a list of variants that may directly affect these traits. This study provides a catalogue of genomic regions showing extreme reduction in genetic variation or population differentiation in dogs, including many linked to phenotypic variation. The many blocks of reduced haplotype diversity observed across the genome in dog breeds are the result of both selection and genetic drift, but extended blocks of homozygosity on a megabase scale appear to be best explained by selection. Further elucidation of the variants under selection will help to uncover the genetic basis of complex traits and disease. PMID:22022279

Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping.

PubMed

Vaysse, Amaury; Ratnakumar, Abhirami; Derrien, Thomas; Axelsson, Erik; Rosengren Pielberg, Gerli; Sigurdsson, Snaevar; Fall, Tove; Seppälä, Eija H; Hansen, Mark S T; Lawley, Cindy T; Karlsson, Elinor K; Bannasch, Danika; Vilà, Carles; Lohi, Hannes; Galibert, Francis; Fredholm, Merete; Häggström, Jens; Hedhammar, Ake; André, Catherine; Lindblad-Toh, Kerstin; Hitte, Christophe; Webster, Matthew T

2011-10-01

The extraordinary phenotypic diversity of dog breeds has been sculpted by a unique population history accompanied by selection for novel and desirable traits. Here we perform a comprehensive analysis using multiple test statistics to identify regions under selection in 509 dogs from 46 diverse breeds using a newly developed high-density genotyping array consisting of >170,000 evenly spaced SNPs. We first identify 44 genomic regions exhibiting extreme differentiation across multiple breeds. Genetic variation in these regions correlates with variation in several phenotypic traits that vary between breeds, and we identify novel associations with both morphological and behavioral traits. We next scan the genome for signatures of selective sweeps in single breeds, characterized by long regions of reduced heterozygosity and fixation of extended haplotypes. These scans identify hundreds of regions, including 22 blocks of homozygosity longer than one megabase in certain breeds. Candidate selection loci are strongly enriched for developmental genes. We chose one highly differentiated region, associated with body size and ear morphology, and characterized it using high-throughput sequencing to provide a list of variants that may directly affect these traits. This study provides a catalogue of genomic regions showing extreme reduction in genetic variation or population differentiation in dogs, including many linked to phenotypic variation. The many blocks of reduced haplotype diversity observed across the genome in dog breeds are the result of both selection and genetic drift, but extended blocks of homozygosity on a megabase scale appear to be best explained by selection. Further elucidation of the variants under selection will help to uncover the genetic basis of complex traits and disease.

SSR allelic variation in almond (Prunus dulcis Mill.).

PubMed

Xie, Hua; Sui, Yi; Chang, Feng-Qi; Xu, Yong; Ma, Rong-Cai

2006-01-01

Sixteen SSR markers including eight EST-SSR and eight genomic SSRs were used for genetic diversity analysis of 23 Chinese and 15 international almond cultivars. EST- and genomic SSR markers previously reported in species of Prunus, mainly peach, proved to be useful for almond genetic analysis. DNA sequences of 117 alleles of six of the 16 SSR loci were analysed to reveal sequence variation among the 38 almond accessions. For the four SSR loci with AG/CT repeats, no insertions or deletions were observed in the flanking regions of the 98 alleles sequenced. Allelic size variation of these loci resulted exclusively from differences in the structures of repeat motifs, which involved interruptions or occurrences of new motif repeats in addition to varying number of AG/CT repeats. Some alleles had a high number of uninterrupted repeat motifs, indicating that SSR mutational patterns differ among alleles at a given SSR locus within the almond species. Allelic homoplasy was observed in the SSR loci because of base substitutions, interruptions or compound repeat motifs. Substitutions in the repeat regions were found at two SSR loci, suggesting that point mutations operate on SSRs and hinder the further SSR expansion by introducing repeat interruptions to stabilize SSR loci. Furthermore, it was shown that some potential point mutations in the flanking regions are linked with new SSR repeat motif variation in almond and peach.

Estimating Antarctic Near-Surface Magnetic Anomalies from Oersted and CHAMP Satellite Magnetometer Observations

NASA Technical Reports Server (NTRS)

vonFrese, Ralph R. B.; Kim, Hyung Rae; Gaya-Pique, Luis R.; Taylor, Patrick T.; Golynsky, Alexander V.; Kim, Jeong Woo

2004-01-01

Significant improvement in predicting near-surface magnetic anomalies can result from the highly accurate magnetic observations of the CHAMP satellite that is orbiting at about 400 km altitude. In general, regional magnetic signals of the crust are strongly masked by the core field and its secular variations due to wavelength coupling in the spherical harmonic representation and thus are difficult to isolate in the satellite measurements. However, efforts to isolate the regional lithospheric from core field components can exploit the correlations between the CHAMP magnetic anomalies and the pseudo magnetic effects inferred from gravity-derived crustal thickness variations. In addition, we can use spectral correlation theory to filter the static lithospheric field components from the dynamic external field effects. Employing these procedures, we processed the CHAMP magnetic conservations for an improved magnetic anomaly map of the Antarctic crust. Relative to the much higher altitude Oersted and noisier Magsat observations, CHAMP magnetic anomalies at 400 km altitude reveal new details on the effects of intra-crustal magnetic features and crustal thickness variations of the Antarctic. Moreover, these results greatly facilitate predicting magnetic anomalies in the regional coverage gaps of the ADMAP compilation of Antarctic magnetic anomalies from shipborne, airborne and ground surveys. Our analysis suggests that considerable new insights on the magnetic properties of the lithosphere may be revealed by a further order-of-magnitude improvement in the accuracy of the magnetometer.

A Search for Vector Magnetic Field Variations Associated with the M-Class Flares of 1991 June 10 in AR 6659

NASA Technical Reports Server (NTRS)

Hagyard, Mona J.; Stark, B. A.; Venkatakrishnan, P.

1998-01-01

A careful analysis of a 6-hour time sequence of vector magnetograms of AR 6659, observed on 1991 June 10 with the MSFC vector magnetograph, has revealed only minor changes in the vector magnetic field azimuths in the vicinity of two M-class flares, and the association of these changes with the flares is not unambiguous. In this paper we present our analysis of the data which includes comparison of vector magnetograms prior to and during the flares, calculation of distributions of the rms variation of the azimuth at each pixel in the field of view of the active region, and examination of the variation with time of the azimuths at every pixel covered by the main flare emissions as observed with the H-alpha telescope coaligned with the vector magnetograph. We also present results of an analysis of evolutionary changes in the azimuth over the field of view of the active region.

Observations of the diurnal dependence of the high-latitude F region ion density by DMSP satellites

NASA Technical Reports Server (NTRS)

Sojka, J. J.; Raitt, W. J.; Schunk, R. W.; Rich, F. J.; Sagalyn, R. C.

1982-01-01

Data from the DMSP F2 and F4 satellites for the period December 5-10, 1979, have been used to study the diurnal dependence of the high-latitude ion density at 800-km altitude. A 24-hour periodicity in the minimum orbital density (MOD) during a crossing of the high-latitude region is observed in both the winter and summer hemispheres. The phase of the variation in MOD is such that it has a minimum during the 24-hour period between 0700 and 0900 UT. Both the long-term variation of the high-latitude ion density on a time scale of days, and the orbit-by-orbit variations at the same geomagnetic location in the northern (winter) hemisphere for the magnetically quiet time period chosen, show good qualitative agreement with the diurnal dependence predicted by a theoretical model of the ionospheric density at high latitudes under conditions of low convection speeds (Sojka et al., 1981).

Frequent ultraviolet brightenings observed in a solar active region with solar maximum mission

NASA Technical Reports Server (NTRS)

Porter, J. G.; Toomre, J.; Gebbie, K. B.

1984-01-01

Observations of the temporal behavior of ultraviolet emission from bright points within an active region of the sun are reported. Frequent and rapid brightenings in Si IV and O IV line emission are seen. The observations suggest that intermittent heating events of modest amplitude are occurring at many sites within an active region. By selecting the brightest site at any given time within an active region and then sampling its behavior in detail within a 120 s interval, it is found that about two-thirds of the samples show variations of the Si IV line intensity. The brightenings typically last about 40-60 s; intensity increases of about 20-100 percent are frequently observed. The results suggest that heating due to magnetic field reconnection within an active region is proceeding almost stochastically. Events involving only a modest release of energy occur the most frequently.

Thermal response of the F region ionosphere in artificial modification experiments by HF radio waves

NASA Technical Reports Server (NTRS)

Mantas, G. P.; Lahoz, C. H.; Carlson, H. C., Jr.

1981-01-01

The thermal response of the nighttime F region ionosphere to local heating by HF radio waves has been observed with the incoherent scatter radar at Arecibo, Puerto Rico. The observations consist of high-resolution space and time variation of the electron temperature as a high-power HF transmitter is switched on and off with a period 240 s. As soon as the HF transmitter is turned on, the electron temperature begins to rise rapidly in a narrow altitude region near 300 km, below the F2 layer peak. The electron temperature perturbation subsequently spreads over a broader altitude region. The observations are compared with the anticipated thermal response of the ionosphere based on numerical solutions of the coupled time-dependent heat conduction equations for the electron and composite ion gases and are found to be in good agreement over the entire altitude region covered by the observations.

Vascular Variations Associated with Intracranial Aneurysms.

PubMed

Orakdogen, Metin; Emon, Selin Tural; Somay, Hakan; Engin, Taner; Is, Merih; Hakan, Tayfun

2017-01-01

To investigate the vascular variations in patients with intracranial aneurysm in circle of Willis. We used the data on 128 consecutive intracranial aneurysm cases. Cerebral angiography images were analyzed retrospectively. Arteries were grouped as anterior cerebral arterial system (ACS), posterior cerebral arterial system (PCS) and middle cerebral arterial system (MCS) for grouping vascular variations. Lateralization, being single/multiple, gender; and also any connection with accompanying aneurysms" number, localization, dimension, whether bleeding/incidental aneurysm has been inspected. Variations were demonstrated in 57.8% of the cases. The most common variation was A1 variation (34.4%). The rate of variations was 36.7%, 24.2% and 10.2% respectively in ACS, PCS and MCS. MCS variations were significantly higher in males. Anterior communicating artery (ACoA) aneurysm observance rates were significantly higher and posterior communicating artery (PCoA) aneurysm and middle cerebral artery (MCA) aneurysm observance rates were significantly lower when compared to "no ACS variation detected" cases. In "PCS variation detected" cases, PCoA aneurysm observance rates and coexistence of multiple variations were significantly higher. The rate of vascular variations in patients with aneurysms was 57.8%. Arterial hypoplasia and aplasia were the most common variations. ACS was the most common region that variations were located in; they were mostly detected on the right side. Coexistence of ACoA aneurysm was higher than PCoA and MCA aneurysms. In the PCS variations group, PCoA aneurysms were the most common aneurysms that accompanying the variation and multiple variations were more common than in the other two groups. The variations in MCS were most common in males.

Spectral analysis of pipe-to-soil potentials with variations of the Earth's magnetic field in the Australian region

NASA Astrophysics Data System (ADS)

Marshall, R. A.; Waters, C. L.; Sciffer, M. D.

2010-05-01

Long, steel pipelines used to transport essential resources such as gas and oil are potentially vulnerable to space weather. In order to inhibit corrosion, the pipelines are usually coated in an insulating material and maintained at a negative electric potential with respect to Earth using cathodic protection units. During periods of enhanced geomagnetic activity, potential differences between the pipeline and surrounding soil (referred to as pipe-to-soil potentials (PSPs)) may exhibit large voltage swings which place the pipeline outside the recommended "safe range" and at an increased risk of corrosion. The PSP variations result from the "geoelectric" field at the Earth's surface and associated geomagnetic field variations. Previous research investigating the relationship between the surface geoelectric field and geomagnetic source fields has focused on the high-latitude regions where line currents in the ionosphere E region are often the assumed source of the geomagnetic field variations. For the Australian region Sq currents also contribute to the geomagnetic field variations and provide the major contribution during geomagnetic quiet times. This paper presents the results of a spectral analysis of PSP measurements from four pipeline networks from the Australian region with geomagnetic field variations from nearby magnetometers. The pipeline networks extend from Queensland in the north of Australia to Tasmania in the south and provide PSP variations during both active and quiet geomagnetic conditions. The spectral analyses show both consistent phase and amplitude relationships across all pipelines, even for large separations between magnetometer and PSP sites and for small-amplitude signals. Comparison between the observational relationships and model predictions suggests a method for deriving a geoelectric field proxy suitable for indicating PSP-related space weather conditions.

SOAP 2.0: a tool to estimate the photometric and radial velocity variations induced by stellar spots and plages

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dumusque, X.; Boisse, I.; Santos, N. C., E-mail: xdumusque@cfa.harvard.edu

2014-12-01

This paper presents SOAP 2.0, a new version of the Spot Oscillation And Planet (SOAP) code that estimates in a simple way the photometric and radial velocity (RV) variations induced by active regions. The inhibition of the convective blueshift (CB) inside active regions is considered, as well as the limb brightening effect of plages, a quadratic limb darkening law, and a realistic spot and plage contrast ratio. SOAP 2.0 shows that the activity-induced variation of plages is dominated by the inhibition of the CB effect. For spots, this effect becomes significant only for slow rotators. In addition, in the casemore » of a major active region dominating the activity-induced signal, the ratio between the FWHM and the RV peak-to-peak amplitudes of the cross correlation function can be used to infer the type of active region responsible for the signal for stars with v sin i ≤8 km s{sup –1}. A ratio smaller than three implies a spot, while a larger ratio implies a plage. Using the observation of HD 189733, we show that SOAP 2.0 manages to reproduce the activity variation as well as previous simulations when a spot is dominating the activity-induced variation. In addition, SOAP 2.0 also reproduces the activity variation induced by a plage on the slowly rotating star α Cen B, which is not possible using previous simulations. Following these results, SOAP 2.0 can be used to estimate the signal induced by spots and plages, but also to correct for it when a major active region is dominating the RV variation.« less

Electric fields in the ionosphere

NASA Technical Reports Server (NTRS)

Kirchhoff, V. W. J. H.

1975-01-01

F-region drift velocities, measured by incoherent-scatter radar were analyzed in terms of diurnal, seasonal, magnetic activity, and solar cycle effects. A comprehensive electric field model was developed that includes the effects of the E and F-region dynamos, magnetospheric sources, and ionospheric conductivities, for both the local and conjugate regions. The E-region dynamo dominates during the day but at night the F-region and convection are more important. This model provides much better agreement with observations of the F-region drifts than previous models. Results indicate that larger magnitudes occur at night, and that daily variation is dominated by the diurnal mode. Seasonal variations in conductivities and thermospheric winds indicate a reversal in direction in the early morning during winter from south to northward. On magnetic perturbed days and the drifts deviate rather strongly from the quiet days average, especially around 13 L.T. for the northward and 18 L.T. for the westward component.

A comprehensive review of the prevalence of beta globin gene variations and the co-inheritance of related gene variants in Saudi Arabians with beta-thalassemia

PubMed Central

Alaithan, Mousa A.; AbdulAzeez, Sayed; Borgio, J. Francis

2018-01-01

Beta-thalassemia is a genetic disorder that is caused by variations in the beta-hemoglobin (HBB) gene. Saudi Arabia is among the countries most affected by beta-thalassemia, and this is particularly problematic in the Eastern regions. This review article is an attempt to compile all the reported mutations to facilitate further national-level studies to prepare a Saudi repository of HBB gene variations. In Saudi Arabians, IVSI-5 (G>C) and Cd 39 (C>T) are the most prevalent HBB gene variations out of 42 variations. The coinheritance of HBB gene variations with ATRX, HBA1, HBA2, HBA12, AHSP, and KLF1 gene variations were observed to be common in the Saudi population. National surveys on the molecular nature of hemoglobinopathies should be set up through collaborations between research centers from various regions to create a well-documented molecular data bank. This data bank can be used to develop a premarital screening program and lead to the best treatment and prevention strategies for beta-thalassemia. PMID:29619482

A population health approach to reducing observational intensity bias in health risk adjustment: cross sectional analysis of insurance claims

PubMed Central

Sharp, Sandra M; Bevan, Gwyn; Skinner, Jonathan S; Gottlieb, Daniel J

2014-01-01

Objective To compare the performance of two new approaches to risk adjustment that are free of the influence of observational intensity with methods that depend on diagnoses listed in administrative databases. Setting Administrative data from the US Medicare program for services provided in 2007 among 306 US hospital referral regions. Design Cross sectional analysis. Participants 20% sample of fee for service Medicare beneficiaries residing in one of 306 hospital referral regions in the United States in 2007 (n=5 153 877). Main outcome measures The effect of health risk adjustment on age, sex, and race adjusted mortality and spending rates among hospital referral regions using four indices: the standard Centers for Medicare and Medicaid Services—Hierarchical Condition Categories (HCC) index used by the US Medicare program (calculated from diagnoses listed in Medicare’s administrative database); a visit corrected HCC index (to reduce the effects of observational intensity on frequency of diagnoses); a poverty index (based on US census); and a population health index (calculated using data on incidence of hip fractures and strokes, and responses from a population based annual survey of health from the Centers for Disease Control and Prevention). Results Estimated variation in age, sex, and race adjusted mortality rates across hospital referral regions was reduced using the indices based on population health, poverty, and visit corrected HCC, but increased using the standard HCC index. Most of the residual variation in age, sex, and race adjusted mortality was explained (in terms of weighted R2) by the population health index: R2=0.65. The other indices explained less: R2=0.20 for the visit corrected HCC index; 0.19 for the poverty index, and 0.02 for the standard HCC index. The residual variation in age, sex, race, and price adjusted spending per capita across the 306 hospital referral regions explained by the indices (in terms of weighted R2) were 0.50 for the standard HCC index, 0.21 for the population health index, 0.12 for the poverty index, and 0.07 for the visit corrected HCC index, implying that only a modest amount of the variation in spending can be explained by factors most closely related to mortality. Further, once the HCC index is visit corrected it accounts for almost none of the residual variation in age, sex, and race adjusted spending. Conclusion Health risk adjustment using either the poverty index or the population health index performed substantially better in terms of explaining actual mortality than the indices that relied on diagnoses from administrative databases; the population health index explained the majority of residual variation in age, sex, and race adjusted mortality. Owing to the influence of observational intensity on diagnoses from administrative databases, the standard HCC index over-adjusts for regional differences in spending. Research to improve health risk adjustment methods should focus on developing measures of risk that do not depend on observation influenced diagnoses recorded in administrative databases. PMID:24721838

Morphology of the transition from an axial high to a rift valley at the Southeast Indian Ridge and the relation to variations in mantle temperature

NASA Astrophysics Data System (ADS)

Shah, Anjana K.; SempéRé, Jean-Christophe

1998-03-01

The Southeast Indian Ridge exhibits a transition in axial morphology from an East Pacific Rise-like axial high near 100°E to a Mid-Atlantic Ridge-like rift valley near 116°E but spreads at a nearly constant rate of 74-76 mm/yr. Assuming that the source of this transition lies in variations in mantle temperature, we use shipboard gravity-derived crustal thickness and ridge flank depth to estimate the variations in temperature associated with the changes in morphological style. Within the transitional region, SeaBeam 2000 bathymetry shows scattered instances of highs, valleys, and split volcanic ridges at the axis. A comparison of axial morphology to abyssal hill shapes and symmetry properties suggests that this unorganized distribution is due to the ridge axis episodically alternating between an axial valley and a volcanic ridge. Axial morphology can then be divided into three classes, with distinct geographic borders: axial highs and rifted highs are observed west of a transform fault at 102°45'E; rift valleys are observed east of a transform fault at 114°E; and an intermediate-style morphology which alternates between a volcanic ridge and a shallow axial valley is observed between the two. One segment, between 107° and 108°30'E, forms an exception to the geographical boundaries. Gravity-derived crustal thickness and flank depth generally vary monotonically over the region, with the exception of the segment between 107°E and 108°30'E. The long-wavelength variations in these properties correlate with the above morphological classification. Gravity-derived crustal thickness varies on average ˜2 km between the axial high and rift valley regions. The application of previous models relating crustal thickness and mantle temperature places the corresponding temperature variation at 25°C-50°C, depending on the model used. The average depth of ridge flanks varies by ˜550 m over the study area. For a variation of 25°-50°C, thermal models of the mantle predict depth variations of 75-150 m. These values are consistent with observations when the combined contributions of crustal thickness and mantle density to ridge flank depth are considered, assuming Airy isostasy. Crustal thickness variations differ at the two transitions described above: A difference of 750 m in crustal thickness is observed at the rift valley/intermediate-style transition, suggesting small variations in crustal thickness and mantle temperature drive this transition. At the axial high-rifted high/intermediate-style transition, crustal thickness variations are not resolvable, suggesting that this transition is controlled by threshold values of crustal thickness and mantle temperature, and is perhaps related to the presence of a steady state magma chamber.

Cassini UVIS Observations of the Io Plasma Torus. 3; Observations of Temporal and Azimuthal Variability

NASA Technical Reports Server (NTRS)

Steffl, A. J.; Delamere, P. A.; Bagenal, F.

2006-01-01

In this third paper in a series presenting observations by the Cassini Ultraviolet Imaging Spectrometer (UVIS) of the Io plasma torus, we show remarkable, though subtle, spatio-temporal variations in torus properties. The Io torus is found to exhibit significant, near sinusoidal variations in ion composition as a functions of azimuthal position. The azimuthal variation in composition is such that the mixing ratio of S II us strongly correlated with the mixing ratio of S III and the equatorial electron density and strongly anti-correlated with the mixing ratios of both S IV and O II and the equatorial electron temperature. Surprisingly, the azimuthal variation in ion composition is observed to have a period of 10.07 h -- 1.5% longer than the System III rotation period of Jupiter, yet 1.3% shorter than the System UV period defined by [Brown, M. E., 1995. J. Geophys. Res. 100, 21683-21696]. Although the amplitude of the azimuthal variation of S III and O II remained in the range of 2-5%, the amplitude of the S II and S IV compositional variation ranged between 5 and 25% during the UVIS observations. Furthermore, the amplitude of the azimuthal variations of S II and S IV appears to be modulated by its location in System III longitude, such that when the region of maximum S II mixing ration (minimum S IV mixing ratio) is aligned with a System III longitude of 200 deg +/-, the amplitude is a factor of 4 greater than when the variation is anti-aligned. This behavior can explain numerous, often apparently contradictory, observations of variations in the properties of the Io plasma torus with the System III and System IV coordinate systems.

Regional- and local-scale variations in benthic megafaunal composition at the Arctic deep-sea observatory HAUSGARTEN

NASA Astrophysics Data System (ADS)

Taylor, J.; Krumpen, T.; Soltwedel, T.; Gutt, J.; Bergmann, M.

2016-02-01

The Long-Term Ecological Research (LTER) observatory HAUSGARTEN, in the eastern Fram Strait, provides us the valuable ability to study the composition of benthic megafaunal communities through the analysis of seafloor photographs. This, in combination with extensive sampling campaigns, which have yielded a unique data set on faunal, bacterial, biogeochemical and geological properties, as well as on hydrography and sedimentation patterns, allows us to address the question of why variations in megafaunal community structure and species distribution exist within regional (60-110 km) and local (<4 km) scales. Here, we present first results from the latitudinal HAUSGARTEN gradient, consisting of three different stations (N3, HG-IV, S3) between 78°30‧N and 79°45‧N (2351-2788 m depth), obtained via the analysis of images acquired by a towed camera (OFOS-Ocean Floor Observation System) in 2011. We assess variability in megafaunal densities, species composition and diversity as well as biotic and biogenic habitat features, which may cause the patterns observed. While there were significant regional-scale differences in megafaunal composition and densities between the stations (N3=26.74±0.63; HG-IV=11.21±0.25; S3=18.34±0.39 individuals m-2), significant local differences were only found at HG-IV. Regional-scale variations may be due to the significant differences in ice coverage at each station as well as the different quantities of protein available, whereas local-scale differences at HG-IV may be a result of variation in bottom topography or factors not yet identified.

Geographic variability in the association between socioeconomic status and BMI in the USA and Canada.

PubMed

Lebel, Alexandre; Kestens, Yan; Clary, Christelle; Bisset, Sherri; Subramanian, S V

2014-01-01

Reported associations between socioeconomic status (SES) and obesity are inconsistent depending on gender and geographic location. Globally, these inconsistent observations may hide a variation in the contextual effect on individuals' risk of obesity for subgroups of the population. This study explored the regional variability in the association between SES and BMI in the USA and in Canada, and describes the geographical variance patterns by SES category. The 2009-2010 samples of the Behavioral Risk Factor Surveillance System (BRFSS) and the Canadian Community Health Survey (CCHS) were used for this comparison study. Three-level random intercept and differential variance multilevel models were built separately for women and men to assess region-specific BMI by SES category and their variance bounds. Associations between individual SES and BMI differed importantly by gender and countries. At the regional-level, the mean BMI variation was significantly different between SES categories in the USA, but not in Canada. In the USA, whereas the county-specific mean BMI of higher SES individuals remained close to the mean, its variation grown as SES decreased. At the county level, variation of mean BMI around the regional mean was 5 kg/m2 in the high SES group, and reached 8.8 kg/m2 in the low SES group. This study underlines how BMI varies by country, region, gender and SES. Lower socioeconomic groups within some regions show a much higher variation in BMI than in other regions. Above the BMI regional mean, important variation patterns of BMI by SES and place of residence were found in the USA. No such pattern was found in Canada. This study suggests that a change in the mean does not necessarily reflect the change in the variance. Analyzing the variance by SES may be a good way to detect subtle influences of social forces underlying social inequalities.

Functional annotation of HOT regions in the human genome: implications for human disease and cancer

PubMed Central

Li, Hao; Chen, Hebing; Liu, Feng; Ren, Chao; Wang, Shengqi; Bo, Xiaochen; Shu, Wenjie

2015-01-01

Advances in genome-wide association studies (GWAS) and large-scale sequencing studies have resulted in an impressive and growing list of disease- and trait-associated genetic variants. Most studies have emphasised the discovery of genetic variation in coding sequences, however, the noncoding regulatory effects responsible for human disease and cancer biology have been substantially understudied. To better characterise the cis-regulatory effects of noncoding variation, we performed a comprehensive analysis of the genetic variants in HOT (high-occupancy target) regions, which are considered to be one of the most intriguing findings of recent large-scale sequencing studies. We observed that GWAS variants that map to HOT regions undergo a substantial net decrease and illustrate development-specific localisation during haematopoiesis. Additionally, genetic risk variants are disproportionally enriched in HOT regions compared with LOT (low-occupancy target) regions in both disease-relevant and cancer cells. Importantly, this enrichment is biased toward disease- or cancer-specific cell types. Furthermore, we observed that cancer cells generally acquire cancer-specific HOT regions at oncogenes through diverse mechanisms of cancer pathogenesis. Collectively, our findings demonstrate the key roles of HOT regions in human disease and cancer and represent a critical step toward further understanding disease biology, diagnosis, and therapy. PMID:26113264

Functional annotation of HOT regions in the human genome: implications for human disease and cancer.

PubMed

Li, Hao; Chen, Hebing; Liu, Feng; Ren, Chao; Wang, Shengqi; Bo, Xiaochen; Shu, Wenjie

2015-06-26

Advances in genome-wide association studies (GWAS) and large-scale sequencing studies have resulted in an impressive and growing list of disease- and trait-associated genetic variants. Most studies have emphasised the discovery of genetic variation in coding sequences, however, the noncoding regulatory effects responsible for human disease and cancer biology have been substantially understudied. To better characterise the cis-regulatory effects of noncoding variation, we performed a comprehensive analysis of the genetic variants in HOT (high-occupancy target) regions, which are considered to be one of the most intriguing findings of recent large-scale sequencing studies. We observed that GWAS variants that map to HOT regions undergo a substantial net decrease and illustrate development-specific localisation during haematopoiesis. Additionally, genetic risk variants are disproportionally enriched in HOT regions compared with LOT (low-occupancy target) regions in both disease-relevant and cancer cells. Importantly, this enrichment is biased toward disease- or cancer-specific cell types. Furthermore, we observed that cancer cells generally acquire cancer-specific HOT regions at oncogenes through diverse mechanisms of cancer pathogenesis. Collectively, our findings demonstrate the key roles of HOT regions in human disease and cancer and represent a critical step toward further understanding disease biology, diagnosis, and therapy.

Functional deficit in the medial prefrontal cortex during a language comprehension task in patients with schizophrenia.

PubMed

Dollfus, Sonia; Razafimandimby, Annick; Maiza, Olivier; Lebain, Pierrick; Brazo, Perrine; Beaucousin, Virginie; Lecardeur, Laurent; Delamillieure, Pascal; Mazoyer, Bernard; Tzourio-Mazoyer, Nathalie

2008-02-01

We and others have observed that patients with schizophrenia commonly presented a reduced left recruitment in language semantic brain regions. However, most studies include patients with leftward and rightward lateralizations for language. We investigated whether a cohort comprised purely of patients with typical lateralization (leftward) presented a reduced left recruitment in semantic regions during a language comprehension task. The goal was to reduce the inter-subject variability and thus improve the resolution for studying functional abnormalities in the language network. Twenty-three patients with schizophrenia (DSM-IV) were matched with healthy subjects in age, sex, level of education and handedness. All patients exhibited leftward lateralization for language. Functional MRI was performed as subjects listened to a story comprising characters and social interactions. Functional MRI signal variations were analyzed individually and compared among groups. Although no differences were observed in the recruitment of the semantic language network, patients with schizophrenia presented significantly lower signal variations compared to controls in the medial part of the left superior frontal gyrus (MF1) (x=-6, y=58, z=20; Z(score)=5.6; p<0.001 uncorrected). This region corresponded to the Theory of Mind (ToM) network. Only 5 of the 23 patients (21.7%) and 21 of the 23 (91.3%) control subjects demonstrated a positive signal variation in this area. A left functional deficit was observed in a core region of the ToM network in patients with schizophrenia and typical lateralizations for language. This functional defect could represent a neural basis for impaired social interaction and communication in patients with schizophrenia.

Observed Differences between North American Snow Extent and Snow Depth Variability

NASA Astrophysics Data System (ADS)

Ge, Y.; Gong, G.

2006-12-01

Snow extent and snow depth are two related characteristics of a snowpack, but they need not be mutually consistent. Differences between these two variables at local scales are readily apparent. However at larger scales which interact with atmospheric circulation and climate, snow extent is typically the variable used, while snow depth is often assumed to be minor and/or mutually consistent compared to snow extent, though this is rarely verified. In this study, a new regional/continental-scale gridded dataset derived from field observations is utilized to quantitatively evaluate the relationship between snow extent and snow depth over North America. Various statistical methods are applied to assess the mutual consistency of monthly snow depth vs. snow extent, including correlations, composites and principal components. Results indicate that snow depth variations are significant in their own rights, and that depth and extent anomalies are largely unrelated, especially over broad high latitude regions north of the snowline. In the vicinity of the snowline, where precipitation and ablation can affect both snow extent and snow depth, the two variables vary concurrently, especially in autumn and spring. It is also found that deeper winter snow translates into larger snow-covered area in the subsequent spring/summer season, which suggests a possible influence of winter snow depth on summer climate. The observed lack of mutual consistency at continental/regional scales suggests that snowpack depth variations may be of sufficiently large magnitude, spatial scope and temporal duration to influence regional-hemispheric climate, in a manner unrelated to the more extensively studied snow extent variations.

Spectral characteristics and meridional variations of energy transformations during the first and second special observation periods of FGGE

NASA Technical Reports Server (NTRS)

Kung, E. C.; Tanaka, H.

1984-01-01

The global features and meridional spectral energy transformation variations of the first and second special observation periods of the First Global GARP Experiment (FGGE) are investigated, together with the latitudinal distribution of the kinetic energy balance. Specific seasonal characteristics are shown by the spectral distributions of the global transformations between (1) zonal mean and eddy components of the available potential energy, (2) the zonal mean and eddy components of the kinetic energy, and (3) the available potential energy and the kinetic energy. Maximum kinetic energy production is found to occur at subtropical latitudes, with a secondary maximum at higher middle latitudes. Between these two regions, there is another region characterized by the adiabatic destruction of kinetic energy above the lower troposphere.

Observation of pressure variation in the cavitation region of submerged journal bearings

NASA Technical Reports Server (NTRS)

Etsion, I.; Ludwig, L. P.

1981-01-01

Visual observations and pressure measurements in the cavitation zone of a submerged journal bearing are described. Tests are run at speeds of 1840 and 3000 rpm, and at each speed, four different levels of the ambient supply pressure are applied, ranging from 13.6 KPa to 54.4 KPa. A strong reverse flow is detected inside the cavitation area adjacent to its downstream end, and significant pressure variations on the order of 50 KPa are found inside the cavitation region at the downstream portion of its circumferential extent. Results indicate that the assumption of a constant cavitation pressure is incorrect in the case of enclosed cavitations, and it is postulated that oil which is saturated with air under atmospheric pressure becomes oversaturated in the subcavity pressure loop.

Pediatric regional examination of the musculoskeletal system: a practice- and consensus-based approach.

PubMed

Foster, Helen; Kay, Lesley; May, Carl; Rapley, Tim

2011-11-01

Competent examination of the pediatric musculoskeletal (MSK) system is a vital component of clinical assessment of children with MSK presentations. The aim was to develop a regional MSK examination for school-age children that is age appropriate and reflects clinical practice. Qualitative and quantitative analyses involving video observation of clinical examination technique, systematic review, and expert consensus were employed to reveal descriptions, frequencies, and variations in technique for joint regions in various clinical scenarios. Systematic review and data from clinical observation were combined with feedback from a group of pediatric MSK experts through a web-based survey. All results were collated and discussed by consensus development groups to derive the pediatric Regional Examination of the Musculoskeletal System (pREMS). A total of 48 pediatric MSK expert clinicians were involved to derive pREMS. Systematic review revealed a paucity of evidence about regional pediatric MSK examination. Video observations of MSK examinations (a total of 2,901 maneuvers) performed by pediatric MSK experts (n = 11 doctors and 8 therapists) of 89 school-age children attending outpatient clinics in 7 UK pediatric rheumatology centers were followed by semistructured interviews with 14 of 19 clinicians. Video observation showed variation in examination techniques, most frequently at the hip and knee in the context of mechanical and inflammatory clinical scenarios. pREMS is the first practice- and consensus-based regional pediatric MSK examination for school-age children. The structured approach is an important step toward improved pediatric MSK clinical skills relevant to clinical training. Copyright © 2011 by the American College of Rheumatology.

Systematic detection and classification of earthquake clusters in Italy

NASA Astrophysics Data System (ADS)

Poli, P.; Ben-Zion, Y.; Zaliapin, I. V.

2017-12-01

We perform a systematic analysis of spatio-temporal clustering of 2007-2017 earthquakes in Italy with magnitudes m>3. The study employs the nearest-neighbor approach of Zaliapin and Ben-Zion [2013a, 2013b] with basic data-driven parameters. The results indicate that seismicity in Italy (an extensional tectonic regime) is dominated by clustered events, with smaller proportion of background events than in California. Evaluation of internal cluster properties allows separation of swarm-like from burst-like seismicity. This classification highlights a strong geographical coherence of cluster properties. Swarm-like seismicity are dominant in regions characterized by relatively slow deformation with possible elevated temperature and/or fluids (e.g. Alto Tiberina, Pollino), while burst-like seismicity are observed in crystalline tectonic regions (Alps and Calabrian Arc) and in Central Italy where moderate to large earthquakes are frequent (e.g. L'Aquila, Amatrice). To better assess the variation of seismicity style across Italy, we also perform a clustering analysis with region-specific parameters. This analysis highlights clear spatial changes of the threshold separating background and clustered seismicity, and permits better resolution of different clusters in specific geological regions. For example, a large proportion of repeaters is found in the Etna region as expected for volcanic-induced seismicity. A similar behavior is observed in the northern Apennines with high pore pressure associated with mantle degassing. The observed variations of earthquakes properties highlight shortcomings of practices using large-scale average seismic properties, and points to connections between seismicity and local properties of the lithosphere. The observations help to improve the understanding of the physics governing the occurrence of earthquakes in different regions.

Rotational modulation of hydrogen Lyman alpha flux from 44ii Bootis

NASA Technical Reports Server (NTRS)

Vilhu, O.; Neff, J. E.; Rahunen, T.

1988-01-01

Observations with IUE that cover the entire 6.4 hr orbital cycle of the late-type contact binary 44i Bootis are presented. Intrinsic stellar hydrogen Lyman alpha emission flux was determined from low-resolution IUE spectra, compensating for geocoronal emission and for interstellar absorption. The variation of the stellar Lyman alpha emission flux correlates well with the variation of the C II and C IV emission fluxes, and shows orbital modulation in phase with the visual light curve. The ratio of Lyman alpha to CII flux (15 to 20) is similar to that observed in solar active regions. Hydrogen Lyman alpha emission is thus one of the most important cooling channels in the outer atmosphere of 44i Boo. A high-resolution spectrum of the Lyman alpha line was obtained between orbital phases 0.0 and 0.6. The integrated flux in the observed high-resolution Lyman alpha profile is consistent with the fluxes determined using low-resolution spectra, and the composite profile indicates that both components of this binary have equally active chromospheres and transition regions. The uncertainty in the interstellar hydrogen column density cannot mimic the observed variation in the integrated Lyman alpha flux, because the stellar line is very much broader than the interstellar absorption.

Rotational modulation of hydrogen Lyman alpha flux from 44i Bootis

NASA Technical Reports Server (NTRS)

Vilhu, O.; Neff, J. E.; Rahunen, T.

1989-01-01

Observations with IUE that cover the entire 6.4 hr orbital cycle of the late-type contact binary 44i Bootis are presented. Intrinsic stellar hydrogen Lyman alpha emission flux was determined from low-resolution IUE spectra, compensating for geocoronal emission and for interstellar absorption. The variation of the stellar Lyman alpha emission flux correlates well with the variation of the CII and CIV emission fluxes, and shows orbital modulation in phase with the visual light curve. The ratio of Lyman alpha to CII flux (15 to 20) is similar to that observed in solar active regions. Hydrogen Lyman alpha emission is thus one of the most important cooling channels in the outer atmosphere of 44i Boo. A high-resolution spectrum of the Lyman alpha line was obtained between orbital phases 0.0 and 0.6. The integrated flux in the observed high-resolution Lyman alpha profile is consistent with the fluxes determined using low-resolution spectra, and the composite profile indicates that both components of this binary have equally active chromospheres and transition regions. The uncertainty in the interstellar hydrogen column density cannot mimic the observed variation in the integrated Lyman alpha flux, because the stellar line is very much broader than the interstellar absorption.

Transient deformation of karst aquifers observed by GPS: improved knowledge from Central Apennines (Italy)

NASA Astrophysics Data System (ADS)

Silverii, F.; D'Agostino, N.; Borsa, A. A.

2017-12-01

The redistribution of water masses due to temporal variations of hydrological conditions can produce observable deformation of the shallow crust. Space geodesy, e.g., GPS and InSAR, has provided a considerable improvement in terms of data accuracy and spatial and temporal resolution for the detection and investigation of this kind of deformation. In particular, in the areas where snow and water accumulate for long periods, such as aquifers, relatively high deformation (up to several millimeters) has been observed. Karst aquifers are able to store huge amounts of water and a clear deformation related to the groundwater storage variations has been observed in some regions. In a recent study we showed that the karst aquifers of Southern Apennines deform in response of seasonal and interannual variations of groundwater content, producing a visible transient signal in the time series of the surrounding GPS sites. In this work, we analyze the GPS time series and hydrological data of Central Italy, an interesting and complex area which hosts huge karst aquifers and is characterized by high seismic activity. We show that a noticeable transient signal with features similar to those of Southern Apennines affects also the time series of Central Apennines, suggesting that the large karst aquifers of this region experience a process analogue to the ones in Southern Italy. Thanks to the availability of a dense GPS network and different kinds of hydrological data (rainfall, spring discharge, groundwater level) we focus on the process causing the observed deformation. In particular, we model the observed deformation by inverting the GPS data using Green's functions for finite strain cuboid sources (Barbot et al. 2017). An enhanced understanding of the causes and implications of the highlighted deformation of karst aquifers is of primary interest for an improved management of this important water resource and for a better understanding of the possible interactions between groundwater variations, variations of pore pressure in the crust and seismicity.

Quantifying Geographic Variation in Health Care Outcomes in the United States before and after Risk-Adjustment.

PubMed

Rosenberg, Barry L; Kellar, Joshua A; Labno, Anna; Matheson, David H M; Ringel, Michael; VonAchen, Paige; Lesser, Richard I; Li, Yue; Dimick, Justin B; Gawande, Atul A; Larsson, Stefan H; Moses, Hamilton

2016-01-01

Despite numerous studies of geographic variation in healthcare cost and utilization at the local, regional, and state levels across the U.S., a comprehensive characterization of geographic variation in outcomes has not been published. Our objective was to quantify variation in US health outcomes in an all-payer population before and after risk-adjustment. We used information from 16 independent data sources, including 22 million all-payer inpatient admissions from the Healthcare Cost and Utilization Project (which covers regions where 50% of the U.S. population lives) to analyze 24 inpatient mortality, inpatient safety, and prevention outcomes. We compared outcome variation at state, hospital referral region, hospital service area, county, and hospital levels. Risk-adjusted outcomes were calculated after adjusting for population factors, co-morbidities, and health system factors. Even after risk-adjustment, there exists large geographical variation in outcomes. The variation in healthcare outcomes exceeds the well publicized variation in US healthcare costs. On average, we observed a 2.1-fold difference in risk-adjusted mortality outcomes between top- and bottom-decile hospitals. For example, we observed a 2.3-fold difference for risk-adjusted acute myocardial infarction inpatient mortality. On average a 10.2-fold difference in risk-adjusted patient safety outcomes exists between top and bottom-decile hospitals, including an 18.3-fold difference for risk-adjusted Central Venous Catheter Bloodstream Infection rates. A 3.0-fold difference in prevention outcomes exists between top- and bottom-decile counties on average; including a 2.2-fold difference for risk-adjusted congestive heart failure admission rates. The population, co-morbidity, and health system factors accounted for a range of R2 between 18-64% of variability in mortality outcomes, 3-39% of variability in patient safety outcomes, and 22-70% of variability in prevention outcomes. The amount of variability in health outcomes in the U.S. is large even after accounting for differences in population, co-morbidities, and health system factors. These findings suggest that: 1) additional examination of regional and local variation in risk-adjusted outcomes should be a priority; 2) assumptions of uniform hospital quality that underpin rationale for policy choices (such as narrow insurance networks or antitrust enforcement) should be challenged; and 3) there exists substantial opportunity for outcomes improvement in the US healthcare system.

Physics based model of D-region variability related to VLF propagation effects

NASA Astrophysics Data System (ADS)

Chakravarty, S. C.

2012-07-01

D-region (~60-85 km) electron density profiles measured using large number of sounding rocket experiments carried out from two Indian low latitude stations show large variations with solar zenith angle, season and solar activity. Similarly the ground based multi frequency radio wave absorption technique has provided continuous data on the morphology of the hourly electron density variations. However suitable models of the D-region electron density profile variations both during quiet and disturbed solar conditions over the Indian region are lacking. The renewed interest in the study of the VLF/LF propagation anomalies taking place through perturbations in the D-region electron densities due to various geophysical phenomena requires the availability of a baseline D-region model over low latitudes. The purpose of this paper is to critically review the physical processes of D-region production and loss of free electrons, dynamical coupling due to variety of vertically propagating atmospheric waves, sudden changes brought about by the solar energetic events like CMEs and different categories of X-ray flares. Low latitude region is not likely to be affected by the PMSE or PCA type of events but the changes due to lightning induced mesospheric red sprites and LEPs need to be considered. Based on this analysis, a preliminary low latitude D-region electron density profile model development is proposed. Sample results would illustrate key requirements from such a model in terms of its effectiveness to simulate the low latitude observations of VLF/LF amplitude and phase variations using waveguide propagation models like LWPC.

Variation trend of snowfall in the Kamikochi region of the Japanese Alps

NASA Astrophysics Data System (ADS)

Suzuki, K.

2017-12-01

The Japanese Alps experience exceptionally heavy snowfall, extreme even by global standards, and in spring and summer the melting snow becomes a valuable water resource. The snow effectively acts as a natural dam when it accumulates in watersheds during winter. However, there have been no observations of the amount of snow in high-altitude regions of Japan. Therefore, we cannot discuss the effect of global warming on the change in the amount of snow in these regions based on direct observation data. We were, however, able to obtain climatic and hydrologic data for high-altitude sites in the Japanese Alps, and discuss the variations in these conditions in the Kamikochi region (altitude 1490 m-3190 m) of the Japanese Alps over a 68-year period using these observed data. No long-term trends are observed in the annual mean, maximum, or minimum temperatures at Taisho-ike from 1945 to 2012; the total annual precipitation shows a statistically significant decreasing trend. The annual total snowfall at Taisho-ike from 1969 to 2012 shows a statistically significant increasing trend. The annual total runoff of the Azusa River from 1945 to 2012 shows a statistically significant increasing trend, as does the snowmelt runoff to the river (which occurs from May to July). We can thus conclude that the annual snowfall in the Azusa River catchment has increased in recent years.

Cosmic ray sidereal diurnal variation of galactic origin observed by neutron monitors

NASA Technical Reports Server (NTRS)

Ishida, Y.; Nagashima, K.; Mori, S.; Morishita, I.

1985-01-01

Cosmic ray sidereal diurnal variations observed by neutron monitors are analyzed for the period 1961 to 1978, by adding 134 station years data to the previous paper (Nagashima, et al., 1983). Also the dependence of the sidereal variations on Sun's polar magnetic field polarity is examined for two periods; the period of negative polarity in the northern region, 1961 to 1969 and the period of positive polarity, 1970 to 1978. It is obtained that for the former period, the amplitude A=0.0203 + or 0.0020% and the phase phi=6.1 + or - 0.4 h LST and for the latter period, 0.0020% and phi=8.6 + or - 4 h LST, respectively.

Constraining slip rates and spacings for active normal faults

NASA Astrophysics Data System (ADS)

Cowie, Patience A.; Roberts, Gerald P.

2001-12-01

Numerous observations of extensional provinces indicate that neighbouring faults commonly slip at different rates and, moreover, may be active over different time intervals. These published observations include variations in slip rate measured along-strike of a fault array or fault zone, as well as significant across-strike differences in the timing and rates of movement on faults that have a similar orientation with respect to the regional stress field. Here we review published examples from the western USA, the North Sea, and central Greece, and present new data from the Italian Apennines that support the idea that such variations are systematic and thus to some extent predictable. The basis for the prediction is that: (1) the way in which a fault grows is fundamentally controlled by the ratio of maximum displacement to length, and (2) the regional strain rate must remain approximately constant through time. We show how data on fault lengths and displacements can be used to model the observed patterns of long-term slip rate where measured values are sparse. Specifically, we estimate the magnitude of spatial variation in slip rate along-strike and relate it to the across-strike spacing between active faults.

Modeling and Observation of Interstellar He+ Pickup Ions in the Inner Heliosphere

NASA Astrophysics Data System (ADS)

Chen, Junhong

Interstellar pickup ions constitute a charged particle population that originates from interstellar neutrals inside the heliosphere. They are produced by photoionization, charge exchange with solar wind ions, and electron impact ionization (EI). Once ionized, they are picked up by the interplanetary magnetic field (IMF) and rapidly swept outward with the solar wind. Typically, pickup ion distributions have been described in terms of a velocity distribution function that evolves through fast pitch angle scattering followed by adiabatic cooling during radial transport in the reference frame of the solar wind [e.g., Vasyliunas & Siscoe, 1976, VS76 hereafter]. In the VS76 model, the slope of the isotropic velocity distributions is controlled by the combination of the ionization rate and the cooling process. Thus far, for the cooling index that relates the slope of the velocity distribution to the radial transport and expansion of the pickup ions a constant value of 3/2 has been widely used. The implicit assumptions to arrive at this value are immediate PUI isotropization due to pitch angle scattering and solar wind expansion with the square of the distance from the Sun. Any experimental determination of the cooling index depends on the knowledge of the ionization rate and its spatial variation, as well as solar wind and interplanetary conditions. In this thesis, we study their influences on the PUI cooling index and separate them by making use of the two complementary helium PUI data sets from SWICS instrument on the ACE spacecraft, and PLASTIC instrument on STEREO spacecraft. We use the pickup ion observations from ACE SIWCS in the last solar cycle to determine the cooling index, and the possible effects of the electron impact ionization on the determination of the cooling index. With pickup ion observations from STEREO PLASTIC, we determine how solar wind expansion patterns affect the cooling index. We find that the cooling index varies substantially with solar activity and suspect that these variations may be due to the influence of electron impact ionization, solar wind structures, and slow pitch angle scattering. Electron impact ionization, which does not scale as 1/r 2, is shown to have negligible influence on the cooling index and its variations. However, the effects of solar wind compression and rarefaction regions are found to be important. Comparisons of the pickup ion cooling behavior in the compression and rarefaction regions show that the radial solar wind expansion behaviors that differer from the usual 1/r 2 scaling may play the leading roles in the observed variations. A kinetic model of PUI is used to quantitatively describe their behavior in co-rotating interaction regions (CIR). The simulated distributions mimic closely the observed variations in the cooling behavior of PUIs in these regions. In addition, suprathermal tails appear to emerge from the PUI distributions inside compression regions, which provide further evidence that some particles of this population are accelerated locally in CIR compression regions even in the absence of shocks.

A rare variation of the digastric muscle

PubMed Central

KALNIEV, MANOL; KRASTEV, DIMO; KRASTEV, NIKOLAY; VIDINOV, KALIN; VELTCHEV, LUDMIL; APOSTOLOV, ALEXANDER; MILEVA, MILKA

2013-01-01

The digastric muscle is composed by two muscle bellies: an anterior and a posterior, joined by an intermediate tendon. This muscle is situated in the anterior region of the neck. The region between the hyoid bone and the mandible is divided by an anterior belly into two triangles: the submandibular situated laterally and the submental triangle which is located medially. We found that the anatomical variations described in the literature relate mainly to the anterior belly and consist of differences in shape and attachment of the muscle. During routine dissection in February 2013 in the section hall of the Department of Anatomy and Histology in Medical University – Sofia we came across a very interesting variation of the digastric muscle. The digastric muscles that presented anatomical variations were photographed using a Sony Cyber-shot DSC-T1 camera, with a Carl Zeiss Vario-Tessar lens. We found out bilateral variation of the digastric muscle in one cadaver. The anterior bellies were very thin and insert to the hyoid bone. Two anterior bellies connect each other and thus they formed a loop. The anatomical variations observed of our study related only to the anterior belly, as previously described by other authors. It is very important to consider the occurrence of the above mentioned variations in the digastric muscle when surgical procedures are performed on the anterior region of the neck. PMID:26527971

Seasonal and interannual variability of carbon monoxide based on MOZAIC observations, MACC reanalysis, and model simulations over an urban site in India

NASA Astrophysics Data System (ADS)

Sheel, Varun; Sahu, L. K.; Kajino, M.; Deushi, M.; Stein, O.; Nedelec, P.

2014-07-01

The spatial and temporal variations of carbon monoxide (CO) are analyzed over a tropical urban site, Hyderabad (17°27'N, 78°28'E) in central India. We have used vertical profiles from the Measurement of ozone and water vapor by Airbus in-service aircraft (MOZAIC) aircraft observations, Monitoring Atmospheric Composition and Climate (MACC) reanalysis, and two chemical transport model simulations (Model for Ozone And Related Tracers (MOZART) and MRI global Chemistry Climate Model (MRI-CCM2)) for the years 2006-2008. In the lower troposphere, the CO mixing ratio showed strong seasonality, with higher levels (>300 ppbv) during the winter and premonsoon seasons associated with a stable anticyclonic circulation, while lower CO values (up to 100 ppbv) were observed in the monsoon season. In the planetary boundary layer (PBL), the seasonal distribution of CO shows the impact of both local meteorology and emissions. While the PBL CO is predominantly influenced by strong winds, bringing regional background air from marine and biomass burning regions, under calm conditions CO levels are elevated by local emissions. On the other hand, in the free troposphere, seasonal variation reflects the impact of long-range transport associated with the Intertropical Convergence Zone and biomass burning. The interannual variations were mainly due to transition from El Niño to La Niña conditions. The overall modified normalized mean biases (normalization based on the observed and model mean values) with respect to the observed CO profiles were lower for the MACC reanalysis than the MOZART and MRI-CCM2 models. The CO in the PBL region was consistently underestimated by MACC reanalysis during all the seasons, while MOZART and MRI-CCM2 show both positive and negative biases depending on the season.

Regional variations in frequency of glycosylated hemoglobin (HbA1c) monitoring in Korea: A multilevel analysis of nationwide data.

PubMed

Yoo, Kyoung-Hun; Shin, Dong-Wook; Cho, Mi-Hee; Kim, Sang-Hyuck; Bahk, Hyun-Jung; Kim, Shin-Hye; Jeong, Su-Min; Yun, Jae-Moon; Park, Jin-Ho; Kim, Heesun; Cho, BeLong

2017-09-01

Suboptimal frequency of glycosylated hemoglobin (HbA1c) monitoring is associated with poor diabetes control. We aimed to analyze compliance to HbA1c testing guidelines and explore associated individual and area-level determinants, focusing on regional variation. This cross-sectional study between the period of 2012-2013 was conducted by using the Korean National Health Insurance Research Database, and included 45,634 patients diagnosed with diabetes mellitus, who were prescribed any anti-diabetic medications, including insulin. We calculated the proportion of each HbA1c testing frequency (≥1, ≥2, or ≥4 times per year) stratified by 17 administrative regions. Multilevel and multivariate logistic analyses were performed with regional (proportion of farmer population) and individual characteristics (age, sex, income level, duration of diabetes, and most visited medical institution). Overall, 67.3% of the patients received≥1 HbA1c test per year; 37.8% and 6.1% received ≥2 and ≥4 tests per year, respectively. Those managed in secondary-level hospitals or clinics and those living in rural areas were less likely to receive HbA1c testing. Even after adjusting for individual and regional level characteristics, significant area level variation was observed (variance participant coefficients were 7.91%, 9.58%, and 14.43% for testing frequencies of ≥1, ≥2, and ≥4 times a year, respectively). The frequency of HbA1c monitoring is suboptimal in Korea, especially in rural areas. Moreover, significant regional variation was observed, implying a contextual effect. This suggests the need for developing policy actions to improve HbA1c monitoring. In particular, access to HbA1c testing in rural primary care clinics must be improved. Copyright © 2017 Elsevier B.V. All rights reserved.

Developing an Earth system Inverse model for the Earth's energy and water budgets.

NASA Astrophysics Data System (ADS)

Haines, K.; Thomas, C.; Liu, C.; Allan, R. P.; Carneiro, D. M.

2017-12-01

The CONCEPT-Heat project aims at developing a consistent energy budget for the Earth system in order to better understand and quantify global change. We advocate a variational "Earth system inverse" solution as the best methodology to bring the necessary expertise from different disciplines together. L'Ecuyer et al (2015) and Rodell et al (2015) first used a variational approach to adjust multiple satellite data products for air-sea-land vertical fluxes of heat and freshwater, achieving closed budgets on a regional and global scale. However their treatment of horizontal energy and water redistribution and its uncertainties was limited. Following the recent work of Liu et al (2015, 2017) which used atmospheric reanalysis convergences to derive a new total surface heat flux product from top of atmosphere fluxes, we have revisited the variational budget approach introducing a more extensive analysis of the role of horizontal transports of heat and freshwater, using multiple atmospheric and ocean reanalysis products. We find considerable improvements in fluxes in regions such as the North Atlantic and Arctic, for example requiring higher atmospheric heat and water convergences over the Arctic than given by ERA-Interim, thereby allowing lower and more realistic oceanic transports. We explore using the variational uncertainty analysis to produce lower resolution corrections to higher resolution flux products and test these against in situ flux data. We also explore the covariance errors implied between component fluxes that are imposed by the regional budget constraints. Finally we propose this as a valuable methodology for developing consistent observational constraints on the energy and water budgets in climate models. We take a first look at the same regional budget quantities in CMIP5 models and consider the implications of the differences for the processes and biases active in the models. Many further avenues of investigation are possible focused on better valuing the uncertainties in observational flux products and setting requirement targets for future observation programs.

Variability of dayside electron temperature at Venus

NASA Technical Reports Server (NTRS)

Mahajan, K. K.; Ghosh, S.; Paul, R.; Hoegy, W. R.

1994-01-01

Langmuir probe measurements on Pioneer Venus Orbiter show that electron temperature (Te) profiles exhibit two distinct regions. The lower, but more extended region is in the main ionosphere where Te increases slowly with altitude. The other, less extended region is in the ionopause, where Te rise sharply with altitude. If horizontal magnetic fields and flux ropes in the ionosphere inhibit vertical thermal conductivity sufficiently, then the observed Te profile could be explained with EUV as the major heat source (Cravens et al., 1980). The rise in Te in the ionopause region has generally been attributed to solar wind heating (Brace and Kliore, 1991). We suggest that this sharp rise in Te is due primarily to the steep fall in electron density, Ne. If the heating rate is essentially unchanged and heat conduction is not of primary importance, then a steep rise in Te will maintain a constant electron cooling rate for a steeply falling Ne. We have observed large orbit to orbit variations in Te in the ionopause region which are found to be inversely related to changes in Ne. Variations in solar wind dynamic pressure do not seem to have a direct effect on Te, rather the effect is indirect coming through the sharp decrease in Ne.

Regional variation of stress level in the Himalayas after the 25 April 2015 Gorkha earthquake (Nepal) estimated using b-values

NASA Astrophysics Data System (ADS)

Ramesh, Pudi; Martha, Tapas R.; Vinod Kumar, K.

2018-06-01

The Gutenberg-Richter (G-R) relation and its parameters reflect the distribution of magnitude and frequency of earthquakes in a seismically active region. Different segments of the Himalayas from west to east behave differently in their G-R relation. In this study, b-values from the G-R relation were computed for the four different seismic zones of the Himalayas, in order to understand the regional variation of stress levels. It was found that the b-value of the Eastern zone is relatively lower than that of the other zones. The b-values before and after the Gorkha (25 April 2015) and Dolakha (12 May 2015) earthquakes were compared for the Central-II seismic zone, where the epicentres of both earthquakes were located. It was observed that the b-value has increased gradually in this region since stress was released episodically. It was also observed that b-values in adjacent zones are lower than that in the source region of the 25 April 2015 earthquake, implying high-stress accumulation. This indicates that the recurrence period of a large earthquake will be high in adjacent zones, particularly in the Eastern zone.

Stress- and structure-controlled anisotropy in a region of complex faulting—Yuha Desert, California

USGS Publications Warehouse

Cochran, Elizabeth S.; Kroll, Kayla A.

2015-01-01

We examine shear velocity anisotropy in the Yuha Desert, California using aftershocks of the 2010 M7.2 El Mayor-Cucapah earthquake. The Yuha Desert is underlain by a complex network of right- and left-lateral conjugate faults, some of which experienced triggered slip during the El Mayor-Cucapah earthquake. An automated method that implements multiple measurement windows and a range of bandpass filters is used to estimate the fast direction (ϕ) and delay time (δt) of the split shear waves. We find an average ϕ oriented approximately north–south suggesting it is primarily controlled by the regional maximum compressive stress direction. However, the spatial variability in ϕ reveals that the fault structures that underlie the Yuha Desert also influence the measured splitting parameters. We infer that the northeast- and northwest-oriented ϕ reflect shear fabric subparallel to the conjugate fault structures. We do not observe a simple correlation between δt and hypocentral distance. Instead, the observed spatial variation in δt suggests that near-source variation in anisotropic strength may be equal to or more important than effects local to the station. No temporal variation in splitting parameters is observed during the 70-day period following the main shock. In this region of complex faulting, we observe a spatially variable pattern of anisotropy that is both stress- and structure-controlled. This study suggests that shear fabric can form even along short, discontinuous fault strands with minimal offset.                   

Gastric cancer incidence and mortality is associated with altitude in the mountainous regions of Pacific Latin America

PubMed Central

Torres, Javier; Correa, Pelayo; Ferreccio, Catterina; Hernandez-Suarez, Gustavo; Herrero, Rolando; Cavazza-Porro, Maria; Dominguez, Ricardo; Morgan, Douglas

2013-01-01

In Latin America, gastric cancer is a leading cancer, and countries in the region have some of the highest mortality rates worldwide, including Chile, Costa Rica, and Colombia. Geographic variation in mortality rates is observed both between neighboring countries and within nations. We discuss epidemiological observations suggesting an association between altitude and gastric cancer risk in Latin America. In the Americas, the burden of gastric cancer mortality is concentrated in the mountainous areas along the Pacific rim, following the geography of the Andes sierra, from Venezuela to Chile, and the Sierra Madre and Cordillera de Centroamérica, from southern Mexico to Costa Rica. Altitude is probably a surrogate for host genetic, bacterial, dietary, and environmental factors that may cluster in the mountainous regions. For example, H. pylori strains from patients of the Andean Nariño region of Colombia display European ancestral haplotypes, whereas strains from the Pacific coast are predominantly of African origin. The observation of higher gastric cancer rates in the mountainous areas is not universal: the association is absent in Chile, where risk is more strongly associated with the age of H. pylori acquisition and socio-economic determinants. The dramatic global and regional variations in gastric cancer incidence and mortality rates offer the opportunity for scientific discovery and focused prevention programs. PMID:23224271

Gastric cancer incidence and mortality is associated with altitude in the mountainous regions of Pacific Latin America.

PubMed

Torres, Javier; Correa, Pelayo; Ferreccio, Catterina; Hernandez-Suarez, Gustavo; Herrero, Rolando; Cavazza-Porro, Maria; Dominguez, Ricardo; Morgan, Douglas

2013-02-01

In Latin America, gastric cancer is a leading cancer, and countries in the region have some of the highest mortality rates worldwide, including Chile, Costa Rica, and Colombia. Geographic variation in mortality rates is observed both between neighboring countries and within nations. We discuss epidemiological observations suggesting an association between altitude and gastric cancer risk in Latin America. In the Americas, the burden of gastric cancer mortality is concentrated in the mountainous areas along the Pacific rim, following the geography of the Andes sierra, from Venezuela to Chile, and the Sierra Madre and Cordillera de Centroamérica, from southern Mexico to Costa Rica. Altitude is probably a surrogate for host genetic, bacterial, dietary, and environmental factors that may cluster in the mountainous regions. For example, H. pylori strains from patients of the Andean Nariño region of Colombia display European ancestral haplotypes, whereas strains from the Pacific coast are predominantly of African origin. The observation of higher gastric cancer rates in the mountainous areas is not universal: the association is absent in Chile, where risk is more strongly associated with the age of H. pylori acquisition and socio-economic determinants. The dramatic global and regional variations in gastric cancer incidence and mortality rates offer the opportunity for scientific discovery and focused prevention programs.

Seasonal Variations of the Earth's Gravitational Field: An Analysis of Atmospheric Pressure, Ocean Tidal, and Surface Water Excitation

NASA Technical Reports Server (NTRS)

Dong, D,; Gross, R.S.; Dickey, J.

1996-01-01

Monthly mean gravitational field parameters (denoted here as C(sub even)) that represent linear combinations of the primarily even degree zonal spherical harmonic coefficients of the Earth's gravitational field have been recovered using LAGEOS I data and are compared with those derived from gridded global surface pressure data of the National meteorological center (NMC) spanning 1983-1992. The effect of equilibrium ocean tides and surface water variations are also considered. Atmospheric pressure and surface water fluctuations are shown to be the dominant cause of observed annual C(sub even) variations. Closure with observations is seen at the 1sigma level when atmospheric pressure, ocean tide and surface water effects are include. Equilibrium ocean tides are shown to be the main source of excitation at the semiannual period with closure at the 1sigma level seen when both atmospheric pressure and ocean tide effects are included. The inverted barometer (IB) case is shown to give the best agreement with the observation series. The potential of the observed C(sub even) variations for monitoring mass variations in the polar regions of the Earth and the effect of the land-ocean mask in the IB calculation are discussed.

Quantifying the impact of El Niño-driven variations in temperature and precipitation on regional atmospheric CO2 growth rate variations

NASA Astrophysics Data System (ADS)

Keppel-Aleks, G.; Butterfield, Z.; Doney, S. C.; Dlugokencky, E. J.; Miller, J.; Morton, D. C.

2017-12-01

Quantifying the climatic drivers of variations in atmospheric CO2 observations over a range of timescales is necessary to develop a mechanistic understanding of the global carbon cycle that will enable prediction of future changes. Here, we combine NOAA cooperative global air sampling network CO2 observations, remote sensing data, and a flux perturbation model to quantify the feedbacks between interannual variability in physical climate and the atmospheric CO2 growth rate. In particular, we focus on the differences between the 1997/1998 El Niño and the 2015/2016 El Niño during which atmospheric CO2 increased at an unprecedented rate. The flux perturbation model was trained on data from 1997 to 2012, and then used to predict regional atmospheric CO2 growth rate anomalies for the period from 2013 through 2016. Given gridded temperature anomalies from the Hadley Center's Climate Research Unit (CRU), precipitation anomalies from the Global Precipitation Climatology Project (GPCP), and fire emissions from the Global Fire Emissions Database (GFEDv4s), the model was able to the reproduce regional growth rate variations observed at marine boundary layer stations in the NOAA network, including the rapid CO2 growth rate in 2015/2016. The flux perturbation model output suggests that the carbon cycle responses differed for1997 and 2015 El Niño periods, with tropical precipitation anomalies causing a much larger net flux of CO2 to the atmosphere during the latter period, while direct fire emissions dominated the former. The flux perturbation model also suggests that high temperature stress in the Northern Hemisphere extratropics contributed almost one-third of the CO2 growth rate enhancement during the 2015 El Niño. We use satellite-based metrics for atmospheric column CO2, vegetation, and moisture to corroborate the regional El Niño impacts from the flux perturbation model. Finally, we discuss how these observational results and independent data on ocean air-sea flux anomalies, couched in an empirical model, may be useful for evaluating the fidelity of mechanistic land models.

Copy number variation in the region harboring SOX9 gene in dogs with testicular/ovotesticular disorder of sex development (78,XX; SRY-negative).

PubMed

Marcinkowska-Swojak, Malgorzata; Szczerbal, Izabela; Pausch, Hubert; Nowacka-Woszuk, Joanna; Flisikowski, Krzysztof; Dzimira, Stanislaw; Nizanski, Wojciech; Payan-Carreira, Rita; Fries, Ruedi; Kozlowski, Piotr; Switonski, Marek

2015-10-01

Although the disorder of sex development in dogs with female karyotype (XX DSD) is quite common, its molecular basis is still unclear. Among mutations underlying XX DSD in mammals are duplication of a long sequence upstream of the SOX9 gene (RevSex) and duplication of the SOX9 gene (also observed in dogs). We performed a comparative analysis of 16 XX DSD and 30 control female dogs, using FISH and MLPA approaches. Our study was focused on a region harboring SOX9 and a region orthologous to the human RevSex (CanRevSex), which was located by in silico analysis downstream of SOX9. Two highly polymorphic copy number variable regions (CNVRs): CNVR1 upstream of SOX9 and CNVR2 encompassing CanRevSex were identified. Although none of the detected copy number variants were specific to either affected or control animals, we observed that the average number of copies in CNVR1 was higher in XX DSD. No copy variation of SOX9 was observed. Our extensive studies have excluded duplication of SOX9 as the common cause of XX DSD in analyzed samples. However, it remains possible that the causative mutation is hidden in highly polymorphic CNVR1.

Copy number variation in the region harboring SOX9 gene in dogs with testicular/ovotesticular disorder of sex development (78,XX; SRY-negative)

PubMed Central

Marcinkowska-Swojak, Malgorzata; Szczerbal, Izabela; Pausch, Hubert; Nowacka-Woszuk, Joanna; Flisikowski, Krzysztof; Dzimira, Stanislaw; Nizanski, Wojciech; Payan-Carreira, Rita; Fries, Ruedi; Kozlowski, Piotr; Switonski, Marek

2015-01-01

Although the disorder of sex development in dogs with female karyotype (XX DSD) is quite common, its molecular basis is still unclear. Among mutations underlying XX DSD in mammals are duplication of a long sequence upstream of the SOX9 gene (RevSex) and duplication of the SOX9 gene (also observed in dogs). We performed a comparative analysis of 16 XX DSD and 30 control female dogs, using FISH and MLPA approaches. Our study was focused on a region harboring SOX9 and a region orthologous to the human RevSex (CanRevSex), which was located by in silico analysis downstream of SOX9. Two highly polymorphic copy number variable regions (CNVRs): CNVR1 upstream of SOX9 and CNVR2 encompassing CanRevSex were identified. Although none of the detected copy number variants were specific to either affected or control animals, we observed that the average number of copies in CNVR1 was higher in XX DSD. No copy variation of SOX9 was observed. Our extensive studies have excluded duplication of SOX9 as the common cause of XX DSD in analyzed samples. However, it remains possible that the causative mutation is hidden in highly polymorphic CNVR1. PMID:26423656

Analysis of Seasonal Variability in Gulf of Alaska Glacier Mass Balance using GRACE

NASA Astrophysics Data System (ADS)

Arendt, A. A.; Luthcke, S. B.; Oneel, S.; Gardner, A. S.; Hill, D. F.

2011-12-01

Mass variations of glaciers in Alaska/northwestern Canada must be quantified in order to assess impacts on ecosystems, human infrastructure, and global sea level. Here we combine Gravity Recovery and Climate Experiment (GRACE) observations with a wide range of satellite and field data to investigate drivers of these recent changes, with a focus on seasonal variations. Our central focus will be the exceptionally high mass losses of 2009, which do not correlate with weather station temperature and precipitation data, but may be linked to ash fall from the March 31, 2009 eruption of Mt. Redoubt. The eruption resulted in a significant decrease in MODIS-derived surface albedo over many Alaska glacier regions, and likely contributed to some of the 2009 anomalous mass loss observed by GRACE. We also focus on the Juneau and Stikine Icefield regions that are far from the volcanic eruption but experienced the largest mass losses of any region in 2009. Although rapid drawdown of tidewater glaciers was occurring in southeast Alaska during 2009, we show these changes were probably not sufficiently widespread to explain all of the GRACE signal in those regions. We examine additional field and satellite datasets to quantify potential errors in the climate and GRACE fields that could result in the observed discrepancy.

Subseasonal forecast skills and biases of global summer monsoons in the NCEP Climate Forecast System version 2

NASA Astrophysics Data System (ADS)

Liu, Xiangwen; Yang, Song; Li, Qiaoping; Kumar, Arun; Weaver, Scott; Liu, Shi

2014-03-01

Subseasonal forecast skills and biases of global summer monsoons are diagnosed using daily data from the hindcasts of 45-day integrations by the NCEP Climate Forecast System version 2. Predictions for subseasonal variability of zonal wind and precipitation are generally more skillful over the Asian and Australian monsoon regions than other monsoon regions. Climatologically, forecasts for the variations of dynamical monsoon indices have high skills at leads of about 2 weeks. However, apparent interannual differences exist, with high skills up to 5 weeks in exceptional cases. Comparisons for the relationships of monsoon indices with atmospheric circulation and precipitation patterns between skillful and unskillful forecasts indicate that skills for subseasonal variability of a monsoon index depend partially on the degree to which the observed variability of the index attributes to the variation of large-scale circulation. Thus, predictions are often more skillful when the index is closely linked to atmospheric circulation over a broad region than over a regional and narrow range. It is also revealed that, the subseasonal variations of biases of winds, precipitation, and surface temperature over various monsoon regions are captured by a first mode with seasonally independent biases and a second mode with apparent phase transition of biases during summer. The first mode indicates the dominance of overall weaker-than-observed summer monsoons over major monsoon regions. However, at certain stages of monsoon evolution, these underestimations are regionally offset or intensified by the time evolving biases portrayed by the second mode. This feature may be partially related to factors such as the shifts of subtropical highs and intertropical convergence zones, the reversal of biases of surface temperature over some monsoon regions, and the transition of regional circulation system. The significant geographical differences in bias growth with increasing lead time reflect the distinctions of initial memory capability of the climate system over different monsoon regions.

A Three-Dimensional Variational Data Assimilation Scheme for the Regional Ocean Modeling System: Implementation and Basic Experiments

NASA Technical Reports Server (NTRS)

Li, Zhijin; Chao, Yi; McWilliams, James C.; Ide, Kayo

2008-01-01

A three-dimensional variational data assimilation scheme for the Regional Ocean Modeling System (ROMS), named ROMS3DVAR, has been described in the work of Li et al. (2008). In this paper, ROMS3DVAR is applied to the central California coastal region, an area characterized by inhomogeneity and anisotropy, as well as by dynamically unbalanced flows. A method for estimating the model error variances from limited observations is presented, and the construction of the inhomogeneous and anisotropic error correlations based on the Kronecker product is demonstrated. A set of single observation experiments illustrates the inhomogeneous and anisotropic error correlations and weak dynamic constraints used. Results are presented from the assimilation of data gathered during the Autonomous Ocean Sampling Network (AOSN) experiment during August 2003. The results show that ROMS3DVAR is capable of reproducing complex flows associated with upwelling and relaxation, as well as the rapid transitions between them. Some difficulties encountered during the experiment are also discussed.

Investigating common coding of observed and executed actions in the monkey brain using cross-modal multi-variate fMRI classification.

PubMed

Fiave, Prosper Agbesi; Sharma, Saloni; Jastorff, Jan; Nelissen, Koen

2018-05-19

Mirror neurons are generally described as a neural substrate hosting shared representations of actions, by simulating or 'mirroring' the actions of others onto the observer's own motor system. Since single neuron recordings are rarely feasible in humans, it has been argued that cross-modal multi-variate pattern analysis (MVPA) of non-invasive fMRI data is a suitable technique to investigate common coding of observed and executed actions, allowing researchers to infer the presence of mirror neurons in the human brain. In an effort to close the gap between monkey electrophysiology and human fMRI data with respect to the mirror neuron system, here we tested this proposal for the first time in the monkey. Rhesus monkeys either performed reach-and-grasp or reach-and-touch motor acts with their right hand in the dark or observed videos of human actors performing similar motor acts. Unimodal decoding showed that both executed or observed motor acts could be decoded from numerous brain regions. Specific portions of rostral parietal, premotor and motor cortices, previously shown to house mirror neurons, in addition to somatosensory regions, yielded significant asymmetric action-specific cross-modal decoding. These results validate the use of cross-modal multi-variate fMRI analyses to probe the representations of own and others' actions in the primate brain and support the proposed mapping of others' actions onto the observer's own motor cortices. Copyright © 2018 Elsevier Inc. All rights reserved.

Analysis of water level variation of lakes and reservoirs in Xinjiang, China using ICESat laser altimetry data (2003–2009)

PubMed Central

Liu, Hongxing; Chen, Yaning; Shu, Song; Wu, Qiusheng; Wang, Shujie

2017-01-01

This study utilizes ICESat Release 33 GLA14 data to analyse water level variation of Xinjiang’s lakes and reservoirs from 2003 to 2009. By using Landsat images, lakes and reservoirs with area larger than 1 km2 are numerically delineated with a software tool. Based on ICESat observations, we analyse the characteristics of water level variation in different geographic environments, as well as investigate the reasons for the variation. Results indicate that climatic warming contributes to rising water levels in lakes in mountainous areas, especially for lakes that are recharged by snow and glacial melting. For lakes in oases, the water levels are affected jointly by human activity and climate change, while the water levels of reservoirs are mainly affected by human activity. Comparing the annual average rates of water levels, those of lakes are higher than those of reservoirs in oasis areas. The main reasons for the decreasing water levels in desert regions are the reduction of recharged runoff and high evaporation. By analysing the variation of water levels and water volume in different geologic environments, it is found that water level and volume increased in mountainous regions, and decreased in oasis regions and desert regions. Finding also demonstrate that decreasing volume is greater than increasing volume, which results in decreasing total volume of Xinjiang lakes and reservoirs. PMID:28873094

Lapse time and frequency-dependent coda wave attenuation for Delhi and its surrounding regions

NASA Astrophysics Data System (ADS)

Das, Rabin; Mukhopadhyay, Sagarika; Singh, Ravi Kant; Baidya, Pushap R.

2018-07-01

Attenuation of seismic wave energy of Delhi and its surrounding regions has been estimated using coda of local earthquakes. Estimated quality factor (Qc) values are strongly dependent on frequency and lapse time. Frequency dependence of Qc has been estimated from the relationship Qc(f) = Q0fn for different lapse time window lengths. Q0 and n values vary from 73 to 453 and 0.97 to 0.63 for lapse time window lengths of 15 s to 90 s respectively. Average estimated frequency dependent relation is, Qc(f) = 135 ± 8f0.96±0.02 for the entire region for a window length of 30 s, where the average Qc value varies from 200 at 1.5 Hz to 1962 at 16 Hz. These values show that the region is seismically active and highly heterogeneous. The entire study region is divided into two sub-regions according to the geology of the area to investigate if there is a spatial variation in attenuation characteristics in this region. It is observed that at smaller lapse time both regions have similar Qc values. However, at larger lapse times the rate of increase of Qc with frequency is larger for Region 2 compared to Region 1. This is understandable, as it is closer to the tectonically more active Himalayan ranges and seismically more active compared to Region 1. The difference in variation of Qc with frequencies for the two regions is such that at larger lapse time and higher frequencies Region 2 shows higher Qc compared to Region 1. For lower frequencies the opposite situation is true. This indicates that there is a systematic variation in attenuation characteristics from the south (Region 1) to the north (Region 2) in the deeper part of the study area. This variation can be explained in terms of an increase in heat flow and a decrease in the age of the rocks from south to north.

Jet outflow and gamma-ray emission correlations in S5 0716+714

DOE PAGES

Rani, B.; Krichbaum, T. P.; Marscher, A. P.; ...

2014-11-06

Here, using millimeter very long baseline interferometry (VLBI) observations of the BL Lac object S5 0716+714 from August 2008 to September 2013, we investigate variations in the core flux density and orientation of the sub-parsec scale jet, i.e. position angle. The γ-ray data obtained by the Fermi Large Area Telescope are used to investigate the high-energy flux variations over the same time period. For the first time in any blazar, we report a significant correlation between the γ-ray flux variations and the position angle variations in the VLBI jet. The cross-correlation analysis also indicates a positive correlation such that themore » mm-VLBI core flux density variations are delayed with respect to the γ-ray flux by 82±32 days. This suggests that the high-energy emission is coming from a region located ≥(3.8±1.9) parsecs upstream of the mm-VLBI core (closer to the central black hole). Lastly, these results imply that the observed inner jet morphology has a strong connection with the observed γ-ray flares.« less

Jet outflow and gamma-ray emission correlations in S5 0716+714

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rani, B.; Krichbaum, T. P.; Marscher, A. P.

Here, using millimeter very long baseline interferometry (VLBI) observations of the BL Lac object S5 0716+714 from August 2008 to September 2013, we investigate variations in the core flux density and orientation of the sub-parsec scale jet, i.e. position angle. The γ-ray data obtained by the Fermi Large Area Telescope are used to investigate the high-energy flux variations over the same time period. For the first time in any blazar, we report a significant correlation between the γ-ray flux variations and the position angle variations in the VLBI jet. The cross-correlation analysis also indicates a positive correlation such that themore » mm-VLBI core flux density variations are delayed with respect to the γ-ray flux by 82±32 days. This suggests that the high-energy emission is coming from a region located ≥(3.8±1.9) parsecs upstream of the mm-VLBI core (closer to the central black hole). Lastly, these results imply that the observed inner jet morphology has a strong connection with the observed γ-ray flares.« less

Processes of 30-90 days sea surface temperature variability in the northern Indian Ocean during boreal summer

NASA Astrophysics Data System (ADS)

Vialard, J.; Jayakumar, A.; Gnanaseelan, C.; Lengaigne, M.; Sengupta, D.; Goswami, B. N.

2012-05-01

During summer, the northern Indian Ocean exhibits significant atmospheric intraseasonal variability associated with active and break phases of the monsoon in the 30-90 days band. In this paper, we investigate mechanisms of the Sea Surface Temperature (SST) signature of this atmospheric variability, using a combination of observational datasets and Ocean General Circulation Model sensitivity experiments. In addition to the previously-reported intraseasonal SST signature in the Bay of Bengal, observations show clear SST signals in the Arabian Sea related to the active/break cycle of the monsoon. As the atmospheric intraseasonal oscillation moves northward, SST variations appear first at the southern tip of India (day 0), then in the Somali upwelling region (day 10), northern Bay of Bengal (day 19) and finally in the Oman upwelling region (day 23). The Bay of Bengal and Oman signals are most clearly associated with the monsoon active/break index, whereas the relationship with signals near Somali upwelling and the southern tip of India is weaker. In agreement with previous studies, we find that heat flux variations drive most of the intraseasonal SST variability in the Bay of Bengal, both in our model (regression coefficient, 0.9, against ~0.25 for wind stress) and in observations (0.8 regression coefficient); ~60% of the heat flux variation is due do shortwave radiation and ~40% due to latent heat flux. On the other hand, both observations and model results indicate a prominent role of dynamical oceanic processes in the Arabian Sea. Wind-stress variations force about 70-100% of SST intraseasonal variations in the Arabian Sea, through modulation of oceanic processes (entrainment, mixing, Ekman pumping, lateral advection). Our ~100 km resolution model suggests that internal oceanic variability (i.e. eddies) contributes substantially to intraseasonal variability at small-scale in the Somali upwelling region, but does not contribute to large-scale intraseasonal SST variability due to its small spatial scale and random phase relation to the active-break monsoon cycle. The effect of oceanic eddies; however, remains to be explored at a higher spatial resolution.

Atmospheric Structure and Diurnal Variations at Low Altitudes in the Martian Tropics

NASA Astrophysics Data System (ADS)

Hinson, David P.; Spiga, A.; Lewis, S.; Tellmann, S.; Pätzold, M.; Asmar, S.; Häusler, B.

2013-10-01

We are using radio occultation measurements from Mars Express, Mars Reconnaissance Orbiter, and Mars Global Surveyor to characterize the diurnal cycle in the lowest scale height above the surface. We focus on northern spring and summer, using observations from 4 Martian years at local times of 4-5 and 15-17 h. We supplement the observations with results obtained from large-eddy simulations and through data assimilation by the UK spectral version of the LMD Mars Global Circulation Model. We previously investigated the depth of the daytime convective boundary layer (CBL) and its variations with surface elevation and surface properties. We are now examining unusual aspects of the temperature structure observed at night. Most important, predawn profiles in the Tharsis region contain an unexpected layer of neutral static stability at pressures of 200-300 Pa with a depth of 4-5 km. The mixed layer is bounded above by a midlevel temperature inversion and below by another strong inversion adjacent to the surface. The narrow temperature minimum at the base of the midlevel inversion suggests the presence of a water ice cloud layer, with the further implication that radiative cooling at cloud level can induce convective activity at lower altitudes. Conversely, nighttime profiles in Amazonis show no sign of a midlevel inversion or a detached mixed layer. These regional variations in the nighttime temperature structure appear to arise in part from large-scale variations in topography, which have several notable effects. First, the CBL is much deeper in the Tharsis region than in Amazonis, owing to a roughly 6-km difference in surface elevation. Second, large-eddy simulations show that daytime convection is not only deeper above Tharsis but also considerably more intense than it is in Amazonis. Finally, the daytime surface temperatures are comparable in the two regions, so that Tharsis acts as an elevated heat source throughout the CBL. These topographic effects are expected to enhance the vertical mixing of water vapor above elevated terrain, which might lead to the formation and regional confinement of nighttime clouds.

Mass-induced sea level variations in the Red Sea from GRACE, steric-corrected altimetry, in situ bottom pressure records, and hydrographic observations

NASA Astrophysics Data System (ADS)

Feng, W.; Lemoine, J.-M.; Zhong, M.; Hsu, H. T.

2014-08-01

An annual amplitude of ∼18 cm mass-induced sea level variations (SLV) in the Red Sea is detected from the Gravity Recovery and Climate Experiment (GRACE) satellites and steric-corrected altimetry from 2003 to 2011. The annual mass variations in the region dominate the mean SLV, and generally reach maximum in late January/early February. The annual steric component of the mean SLV is relatively small (<3 cm) and out of phase of the mass-induced SLV. In situ bottom pressure records at the eastern coast of the Red Sea validate the high mass variability observed by steric-corrected altimetry and GRACE. In addition, the horizontal water mass flux of the Red Sea estimated from GRACE and steric-corrected altimetry is validated by hydrographic observations.

Contrasting Histories of Three Gene Regions Associated with In(3l)payne of Drosophila Melanogaster

PubMed Central

Hasson, E.; Eanes, W. F.

1996-01-01

In the present report, we studied nucleotide variation in three gene regions of Drosophila melanogaster, spanning >5 kb and showing different degrees of association with the cosmopolitan inversion In(3-L)Payne. The analysis of sequence variation in the regions surrounding the breakpoints and the heat shock 83 (Hsp83) gene locus, located close to the distal breakpoint, revealed the absence of shared polymorphisms and the presence of a number of fixed differences between arrangements, indicating absence of genetic exchange. In contrast, for the esterase-6 gene region, located in the center of the inversion, we observed the presence of shared polymorphisms between arrangements suggesting genetic exchange. In the regions close to the breakpoints, the common St arrangement is 10 times more polymorphic than inverted chromosomes. We propose that the lack of recombination between arrangements in these regions coupled with genetic hitchhiking is the best explanation for the low heterozygosity observed in inverted lines. Using the data for the breakpoints, we estimate that this inversion polymorphism is around 0.36 million yr old. Although it is widely accepted that inversions are examples of balanced polymorphisms, none of the current neutrality tests including our Monte Carlo simulations showed significant departure from neutral expectations. PMID:8978045

Variation of Equatorial F-region Vertical Neutral Wind and Neutral Temperature during Geomagnetic Storms: Brazil FPI Observations

NASA Astrophysics Data System (ADS)

Sheng, C.; De La Garza, J. L.; Deng, Y.; Makela, J. J.; Fisher, D. J.; Meriwether, J. W.; Mesquita, R.

2015-12-01

An accurate description of vertical neutral winds in the thermosphere is essential to understand how the upper atmosphere responds to the geomagnetic storms. However, vertical wind measurements are difficult to obtain and there are still limited data. Recent observation deployments now permit substantial progress on this issue. In this paper, neutral vertical wind data from Brazil FPI observations at around 240 km altitude during 2009 to 2015 are used for the study of the equatorial vertical wind and neutral temperature variation during geomagnetic activity times. First, the observations during several particular storm periods will be analyzed. Secondly, Epoch analysis will be used to bin all the observed events together to investigate the climatological features of vertical wind and temperature during storms. The results will give us an unprecedented view of the nighttime vertical wind and neutral temperature variations at low latitudes, which is critical to specify the dynamics of the upper atmosphere.

Long-term active-layer dynamics: results of 22 years of field observations in Northern Hemisphere permafrost regions.

NASA Astrophysics Data System (ADS)

Shiklomanov, N. I.; Nelson, F. E.; Streletskiy, D. A.; Klene, A. E.; Biskaborn, B. K.

2016-12-01

The uppermost layer of seasonal thawing above permafrost (the active layer) is an important regulator of energy and mass fluxes between the surface and the atmosphere in the polar regions. Active layer monitoring is an important component of efforts to assess the effects of global change in permafrost environments. The Circumpolar Active Layer Monitoring (CALM) program, established in the early 1990s, is designed to observe temporal and spatial variability of the active layer and its response to changes and variations in climatic conditions. The CALM network is an integral part of the Global Terrestrial Network for Permafrost (GTN-P), operating under the auspices of the Global Terrestrial Observing System (GTOS) /Global Climate Observing System (GCOS). Standardized thaw depth observations in the Northern Hemisphere are available for more than 200 GTN-P/CALM sites in the Northern Hemisphere. At each of the sites spatially distributed ALT measurements have been conducted annually by mechanical probing. The locations of sites represent generalized surface and subsurface conditions characteristic of broader regions. The data are assimilated and distributed though the CALM (www.gwu.edu/ calm) and GTN-P (gtnpdatabase.org) online databases. In this presentation we use data from approximately 20 years of continuous observations to examine temporal trends in active-layer thickness for several representative Arctic regions. Results indicate substantial interannual fluctuations in active-layer thickness, primarily in response to variations in air temperature. Decadal trends in ALT vary by region. A progressive increase in ALT has been observed in the Nordic countries, the Russian European North, West Siberia, East Siberia, the Russian Far East, and the Interior of Alaska. North American Arctic sites show no apparent thaw depth trend over 22-years of record. However, combined active layer, ground temperature and heave/subsidence observations conducted in northern Alaska demonstrate a complex, non-linear response of the active-layer/upper permafrost system to changes in climatic conditions.

Genome-wide association study identifies SNPs in the MHC class II loci that are associated with self-reported history of whooping cough

PubMed Central

McMahon, George; Ring, Susan M.; Davey-Smith, George; Timpson, Nicholas J.

2015-01-01

Whooping cough is currently seeing resurgence in countries despite high vaccine coverage. There is considerable variation in subject-specific response to infection and vaccine efficacy, but little is known about the role of human genetics. We carried out a case–control genome-wide association study of adult or parent-reported history of whooping cough in two cohorts from the UK: the ALSPAC cohort and the 1958 British Birth Cohort (815/758 cases and 6341/4308 controls, respectively). We also imputed HLA alleles using dense SNP data in the MHC region and carried out gene-based and gene-set tests of association and estimated the amount of additive genetic variation explained by common SNPs. We observed a novel association at SNPs in the MHC class II region in both cohorts [lead SNP rs9271768 after meta-analysis, odds ratio [95% confidence intervals (CIs)] 1.47 (1.35, 1.6), P-value 1.21E − 18]. Multiple strong associations were also observed at alleles at the HLA class II loci. The majority of these associations were explained by the lead SNP rs9271768. Gene-based and gene-set tests and estimates of explainable common genetic variation could not establish the presence of additional associations in our sample. Genetic variation at the MHC class II region plays a role in susceptibility to whooping cough. These findings provide additional perspective on mechanisms of whooping cough infection and vaccine efficacy. PMID:26231221

Activity-induced dental modification in holocene siberian hunter-fisher-gatherers.

PubMed

Waters-Rist, Andrea; Bazaliiskii, Vladimir I; Weber, Andrzej; Goriunova, Olga I; Katzenberg, M Anne

2010-10-01

The use of teeth as tools provides clues to past subsistence patterns and cultural practices. Five Holocene period hunter-fisher-gatherer mortuary sites from the south-western region of Lake Baikal, Siberia, Russian Federation, are observed for activity-induced dental modification (AIDM) to further characterize their adaptive regimes. Grooves on the occlusal surfaces of teeth are observed in 25 out of 123 individuals (20.3%) and were most likely produced during the processing of fibers from plants and animals, for making items such as nets and cordage. Regional variation in the frequency of individuals with occlusal grooves is found in riverine versus lakeshore sites. This variation suggests that production of material culture items differed, perhaps in relation to different fishing practices. There is also variation in the distribution of grooves by sex: grooves are found predominately in females, except at the Late Neolithic-Bronze Age river site of Ust'-Ida I where grooves are found exclusively in males. Occlusal grooves were cast using polyvinylsiloxane and maxillary canine impressions were examined by scanning electron microscopy (SEM) to determine striation patterns. Variation in striae orientation suggests that a variety of activities, and/or different manufacturing techniques, were involved in groove production. Overall, the variability in occlusal groove frequency, sex and regional distribution, and microscopic striae patterns, points to the multiplicity of activities and ways in which people used their mouths and teeth in cultural activities. © 2010 Wiley-Liss, Inc.

Synthesis of Remote Sensing and Field Observations to Model and Understand Disturbance and Climate Effects on the Carbon Balance of Oregon & Northern California

DOE Office of Scientific and Technical Information (OSTI.GOV)

Beverly Law; David Turner; Warren Cohen

2008-05-22

The goal is to quantify and explain the carbon (C) budget for Oregon and N. California. The research compares "bottom -up" and "top-down" methods, and develops prototype analytical systems for regional analysis of the carbon balance that are potentially applicable to other continental regions, and that can be used to explore climate, disturbance and land-use effects on the carbon cycle. Objectives are: 1) Improve, test and apply a bottom up approach that synthesizes a spatially nested hierarchy of observations (multispectral remote sensing, inventories, flux and extensive sites), and the Biome-BGC model to quantify the C balance across the region; 2)more » Improve, test and apply a top down approach for regional and global C flux modeling that uses a model-data fusion scheme (MODIS products, AmeriFlux, atmospheric CO2 concentration network), and a boundary layer model to estimate net ecosystem production (NEP) across the region and partition it among GPP, R(a) and R(h). 3) Provide critical understanding of the controls on regional C balance (how NEP and carbon stocks are influenced by disturbance from fire and management, land use, and interannual climate variation). The key science questions are, "What are the magnitudes and distributions of C sources and sinks on seasonal to decadal time scales, and what processes are controlling their dynamics? What are regional spatial and temporal variations of C sources and sinks? What are the errors and uncertainties in the data products and results (i.e., in situ observations, remote sensing, models)?« less

The effects of snowpack grain size on satellite passive microwave observations from the Upper Colorado River Basin

USGS Publications Warehouse

Josberger, E.G.; Gloersen, P.; Chang, A.; Rango, A.

1996-01-01

Understanding the passive microwave emissions of a snowpack, as observed by satellite sensors, requires knowledge of the snowpack properties: water equivalent, grain size, density, and stratigraphy. For the snowpack in the Upper Colorado River Basin, measurements of snow depth and water equivalent are routinely available from the U.S. Department of Agriculture, but extremely limited information is available for the other properties. To provide this information, a field program from 1984 to 1995 obtained profiles of snowpack grain size, density, and temperature near the time of maximum snow accumulation, at sites distributed across the basin. A synoptic basin-wide sampling program in 1985 showed that the snowpack exhibits consistent properties across large regions. Typically, the snowpack in the Wyoming region contains large amounts of depth hoar, with grain sizes up to 5 mm, while the snowpack in Colorado and Utah is dominated by rounded snow grains less than 2 mm in diameter. In the Wyoming region, large depth hoar crystals in shallow snowpacks yield the lowest emissivities or coldest brightness temperatures observed across the entire basin. Yearly differences in the average grain sizes result primarily from variations in the relative amount of depth hoar within the snowpack. The average grain size for the Colorado and Utah regions shows much less variation than do the grain sizes from the Wyoming region. Furthermore, the greatest amounts of depth hoar occur in the Wyoming region during 1987 and 1992, years with strong El Nin??o Southern Oscillation, but the Colorado and Utah regions do not show this behavior.

Downscaling Satellite Precipitation with Emphasis on Extremes: A Variational ℓ1-Norm Regularization in the Derivative Domain

NASA Astrophysics Data System (ADS)

Foufoula-Georgiou, E.; Ebtehaj, A. M.; Zhang, S. Q.; Hou, A. Y.

2014-05-01

The increasing availability of precipitation observations from space, e.g., from the Tropical Rainfall Measuring Mission (TRMM) and the forthcoming Global Precipitation Measuring (GPM) Mission, has fueled renewed interest in developing frameworks for downscaling and multi-sensor data fusion that can handle large data sets in computationally efficient ways while optimally reproducing desired properties of the underlying rainfall fields. Of special interest is the reproduction of extreme precipitation intensities and gradients, as these are directly relevant to hazard prediction. In this paper, we present a new formalism for downscaling satellite precipitation observations, which explicitly allows for the preservation of some key geometrical and statistical properties of spatial precipitation. These include sharp intensity gradients (due to high-intensity regions embedded within lower-intensity areas), coherent spatial structures (due to regions of slowly varying rainfall), and thicker-than-Gaussian tails of precipitation gradients and intensities. Specifically, we pose the downscaling problem as a discrete inverse problem and solve it via a regularized variational approach (variational downscaling) where the regularization term is selected to impose the desired smoothness in the solution while allowing for some steep gradients (called ℓ1-norm or total variation regularization). We demonstrate the duality between this geometrically inspired solution and its Bayesian statistical interpretation, which is equivalent to assuming a Laplace prior distribution for the precipitation intensities in the derivative (wavelet) space. When the observation operator is not known, we discuss the effect of its misspecification and explore a previously proposed dictionary-based sparse inverse downscaling methodology to indirectly learn the observation operator from a data base of coincidental high- and low-resolution observations. The proposed method and ideas are illustrated in case studies featuring the downscaling of a hurricane precipitation field.

Downscaling Satellite Precipitation with Emphasis on Extremes: A Variational 1-Norm Regularization in the Derivative Domain

NASA Technical Reports Server (NTRS)

Foufoula-Georgiou, E.; Ebtehaj, A. M.; Zhang, S. Q.; Hou, A. Y.

2013-01-01

The increasing availability of precipitation observations from space, e.g., from the Tropical Rainfall Measuring Mission (TRMM) and the forthcoming Global Precipitation Measuring (GPM) Mission, has fueled renewed interest in developing frameworks for downscaling and multi-sensor data fusion that can handle large data sets in computationally efficient ways while optimally reproducing desired properties of the underlying rainfall fields. Of special interest is the reproduction of extreme precipitation intensities and gradients, as these are directly relevant to hazard prediction. In this paper, we present a new formalism for downscaling satellite precipitation observations, which explicitly allows for the preservation of some key geometrical and statistical properties of spatial precipitation. These include sharp intensity gradients (due to high-intensity regions embedded within lower-intensity areas), coherent spatial structures (due to regions of slowly varying rainfall),and thicker-than-Gaussian tails of precipitation gradients and intensities. Specifically, we pose the downscaling problem as a discrete inverse problem and solve it via a regularized variational approach (variational downscaling) where the regularization term is selected to impose the desired smoothness in the solution while allowing for some steep gradients(called 1-norm or total variation regularization). We demonstrate the duality between this geometrically inspired solution and its Bayesian statistical interpretation, which is equivalent to assuming a Laplace prior distribution for the precipitation intensities in the derivative (wavelet) space. When the observation operator is not known, we discuss the effect of its misspecification and explore a previously proposed dictionary-based sparse inverse downscaling methodology to indirectly learn the observation operator from a database of coincidental high- and low-resolution observations. The proposed method and ideas are illustrated in case studies featuring the downscaling of a hurricane precipitation field.

Unusual Observations during the December 2006 Solar Energetic Particle Events within an Interplanetary Coronal Mass Ejection at 1 AU

NASA Astrophysics Data System (ADS)

Mulligan, T.; Blake, J. B.; Mewaldt, R. A.; Leske, R. A.

2008-08-01

In mid December 2006 several flares on the Sun occurred in rapid succession, spawning several CMEs and bathing the Earth in multiple solar energetic particle (SEP) events. One such SEP event occurring on December 14 was observed at the Earth just as an interplanetary CME (ICME) from a previous flare on December 13 was transiting the Earth. Although solar wind observations during this time show typical energetic proton fluxes from the prior SEP event and IP shock driven ahead of the ICME, as the ICME passes the Earth unusual energetic particle signatures are observed. Measurements from ACE, Wind, and STEREO show proton flux variations at energies ranging from ~3 MeV up to greater than 70 MeV. Energetic electron signatures from ACE show similar variations. Within the Earth's magnetosphere Polar HIST also sees these proton flux variations at energies greater than 10 MeV while crossing open field lines in the southern polar cap. Although no such variation in the energetic proton flux is observed at the GOES 11 spacecraft in geosynchronous orbit near the subsolar region, differential fluxes observed at GOES 11 and GOES 12 in the 15-40 MeV energy range do show some variability, indicating the signature is observable near dawn and dusk.

Geomorphic determinants of species composition of alpine tundra, Glacier National Park, U.S.A.

USGS Publications Warehouse

George P. Malanson,; Bengtson, Lindsey E.; Fagre, Daniel B.

2012-01-01

Because the distribution of alpine tundra is associated with spatially limited cold climates, global warming may threaten its local extent or existence. This notion has been challenged, however, based on observations of the diversity of alpine tundra in small areas primarily due to topographic variation. The importance of diversity in temperature or moisture conditions caused by topographic variation is an open question, and we extend this to geomorphology more generally. The extent to which geomorphic variation per se, based on relatively easily assessed indicators, can account for the variation in alpine tundra community composition is analyzed versus the inclusion of broad indicators of regional climate variation. Visual assessments of topography are quantified and reduced using principal components analysis (PCA). Observations of species cover are reduced using detrended correspondence analysis (DCA). A “best subsets” regression approach using the Akaike Information Criterion for selection of variables is compared to a simple stepwise regression with DCA scores as the dependent variable and scores on significant PCA axes plus more direct measures of topography as independent variables. Models with geographic coordinates (representing regional climate gradients) excluded explain almost as much variation in community composition as models with them included, although they are important contributors to the latter. The geomorphic variables in the model are those associated with local moisture differences such as snowbeds. The potential local variability of alpine tundra can be a buffer against climate change, but change in precipitation may be as important as change in temperature.

Radiocarbon observations in atmospheric CO2: determining fossil fuel CO2 over Europe using Jungfraujoch observations as background.

PubMed

Levin, Ingeborg; Hammer, Samuel; Kromer, Bernd; Meinhardt, Frank

2008-03-01

Monthly mean 14CO2 observations at two regional stations in Germany (Schauinsland observatory, Black Forest, and Heidelberg, upper Rhine valley) are compared with free tropospheric background measurements at the High Alpine Research Station Jungfraujoch (Swiss Alps) to estimate the regional fossil fuel CO2 surplus at the regional stations. The long-term mean fossil fuel CO2 surplus at Schauinsland is 1.31+/-0.09 ppm while it is 10.96+/-0.20 ppm in Heidelberg. No significant trend is observed at both sites over the last 20 years. Strong seasonal variations of the fossil fuel CO2 offsets indicate a strong seasonality of emissions but also of atmospheric dilution of ground level emissions by vertical mixing.

The long-range correlation and evolution law of centennial-scale temperatures in Northeast China.

PubMed

Zheng, Xiaohui; Lian, Yi; Wang, Qiguang

2018-01-01

This paper applies the detrended fluctuation analysis (DFA) method to investigate the long-range correlation of monthly mean temperatures from three typical measurement stations at Harbin, Changchun, and Shenyang in Northeast China from 1909 to 2014. The results reveal the memory characteristics of the climate system in this region. By comparing the temperatures from different time periods and investigating the variations of its scaling exponents at the three stations during these different time periods, we found that the monthly mean temperature has long-range correlation, which indicates that the temperature in Northeast China has long-term memory and good predictability. The monthly time series of temperatures over the past 106 years also shows good long-range correlation characteristics. These characteristics are also obviously observed in the annual mean temperature time series. Finally, we separated the centennial-length temperature time series into two time periods. These results reveal that the long-range correlations at the Harbin station over these two time periods have large variations, whereas no obvious variations are observed at the other two stations. This indicates that warming affects the regional climate system's predictability differently at different time periods. The research results can provide a quantitative reference point for regional climate predictability assessment and future climate model evaluation.

Plasmodium vivax circumsporozoite genotypes: a limited variation or new subspecies with major biological consequences?

PubMed Central

2010-01-01

Background Plasmodium vivax circumsporozoite variants have been identified in several geographical areas. The real implication of the genetic variation in this region of the P. vivax genome has been questioned for a long time. Although previous studies have observed significant association between VK210 and the Duffy blood group, we present here that evidences of this variation are limited to the CSP central portion. Methods The phylogenetic analyses were accomplished starting from the amplification of conserved domains of 18 SSU RNAr and Cyt B. The antibodies responses against the CSP peptides, MSP-1, AMA-1 and DBP were detected by ELISA, in plasma samples of individuals infected with two P. vivax CS genotypes: VK210 and P. vivax-like. Results These analyses of the two markers demonstrate high similarity among the P. vivax CS genotypes and surprisingly showed diversity equal to zero between VK210 and P. vivax-like, positioning these CS genotypes in the same clade. A high frequency IgG antibody against the N- and C-terminal regions of the P. vivax CSP was found as compared to the immune response to the R- and V- repetitive regions (p = 0.0005, Fisher's Exact test). This difference was more pronounced when the P. vivax-like variant was present in the infection (p = 0.003, Fisher's Exact test). A high frequency of antibody response against MSP-1 and AMA-1 peptides was observed for all P. vivax CS genotypes in comparison to the same frequency for DBP. Conclusions This results target that the differences among the P. vivax CS variants are restrict to the central repeated region of the protein, mostly nucleotide variation with important serological consequences. PMID:20573199

Interannual Variation in Offshore Advection of Amazon-Orinoco Plume Waters: Observations, Forcing Mechanisms, and Impacts

NASA Astrophysics Data System (ADS)

Fournier, S.; Vandemark, D. C.; Gaultier, L.; Lee, T.; Jonsson, B. F.; Gierach, M. M.

2017-12-01

Sea surface salinity (SSS) and sea surface temperature (SST) variations in the tropical Atlantic east of the Lesser Antilles, a region impacted by freshwater advection from the Amazon and Orinoco Rivers have potential implications to late-summer tropical cyclones (TCs). This study examines these variations during late summer and their forcing mechanisms using observations. During the period 2010-2014, the largest difference in plume-affected area, defined as the extent covered by SSS lower than 35.5 pss, is found between 2011 and 2014. Plume waters covered 92% (60%) of the study region in 2011 (2014) with the averaged SSS in the study region being 2-pss lower in 2011. Lagrangian particle tracking based on satellite-derived ocean currents is used to diagnose the impacts of the river plumes on SSS and SST during 2010-2014. Northward freshwater flux in the summer of 2014 is significantly weaker than those in 2010-2013. This is not due to interannual discharge variability, but significant changes in eddy-driven transport and cross-shore winds. In particular, the stronger cross-shore wind in May 2014 restricted offshore freshwater flow, leading to a smaller extent of the plume-affected area. Persistent SST gradients are often found near the plume edge, which may have implication to ocean-atmosphere coupling associated with TC-related convection. SST in the study region is 1°C higher in 2010 than in other years, and is related to basin-scale ocean-atmosphere processes. Interannual variation in Amazon advective pathways and the associated SSS changes are also influenced by changes in the ITCZ position between 2011 and 2014.

Diurnal and Intra-Annual Variations in Greenhouse Gases at Fixed Sites in the San Francisco Bay Area

NASA Astrophysics Data System (ADS)

Newman, S.; Guha, A.; Martien, P. T.; Bower, J.; Perkins, I.; Randall, S.; Young, A.; Stevenson, E.; Hilken, H.

2017-12-01

The Bay Area Air Quality Management District, the San Francisco Bay Area's air quality regulatory agency, has set a goal to reduce the region's greenhouse gas (GHG) emissions to 80% below 1990 levels by 2050, consistent with the State of California's climate goals. Recently, the Air District's governing board adopted a 2017 Clean Air Plan which lays out the agency's vision and includes actions to put the region on a path towards achieving the 2050 goal while also reducing air pollution and related health impacts. The Plan includes GHG rule-making efforts, policy initiatives, local government partnerships, outreach, grants, and incentives, encompassing over 250 specific implementation actions across all economic sectors to effect ambitious emission reductions in the region. To track trends in atmospheric observations of GHGs and associated species and monitor changes in regional emission patterns, the Air District has established a fixed site network (CO2, CH4, CO) of one generally upwind site (Bodega Bay - on the coast north of Marin County) and three receptor sites (Bethel Island - east of the major refineries, in the Sacramento River Delta; Livermore - east of the bulk of the East Bay cities; and San Martin - south of the major city of San Jose). Having collected over a year of data for each of the fixed sites, the Air District is now investigating spatial and temporal variations in GHG emissions. Concentrating on variations in diurnal cycles, we see the commonly observed pattern of seasonal changes in diurnal amplitude at all sites, with larger variations during the winter than the summer, consistent with seasonally varying daily changes in planetary boundary layer heights. Investigations explore the weekday/weekend effect on the diurnal patterns and the effect of seasonal wind direction changes on the intra-annual variations of the local enhancements. The Air District is beginning to investigate the ways in which the fixed site network reflects the dominant upwind GHG emissions.

Internal Variations in Empirical Oxygen Abundances for Giant H II Regions in the Galaxy NGC 2403

NASA Astrophysics Data System (ADS)

Mao, Ye-Wei; Lin, Lin; Kong, Xu

2018-02-01

This paper presents a spectroscopic investigation of 11 {{H}} {{II}} regions in the nearby galaxy NGC 2403. The {{H}} {{II}} regions are observed with a long-slit spectrograph mounted on the 2.16 m telescope at XingLong station of National Astronomical Observatories of China. For each of the {{H}} {{II}} regions, spectra are extracted at different nebular radii along the slit-coverage. Oxygen abundances are empirically estimated from the strong-line indices R23, N2O2, O3N2, and N2 for each spectrophotometric unit, with both observation- and model-based calibrations adopted into the derivation. Radial profiles of these diversely estimated abundances are drawn for each nebula. In the results, the oxygen abundances separately estimated with the prescriptions on the basis of observations and models, albeit from the same spectral index, systematically deviate from each other; at the same time, the spectral indices R23 and N2O2 are distributed with flat profiles, whereas N2 and O3N2 exhibit apparent gradients with the nebular radius. Because our study naturally samples various ionization levels, which inherently decline at larger radii within individual {{H}} {{II}} regions, the radial distributions indicate not only the robustness of R23 and N2O2 against ionization variations but also the sensitivity of N2 and O3N2 to the ionization parameter. The results in this paper provide observational corroboration of the theoretical prediction about the deviation in the empirical abundance diagnostics. Our future work is planned to investigate metal-poor {{H}} {{II}} regions with measurable T e, in an attempt to recalibrate the strong-line indices and consequently disclose the cause of the discrepancies between the empirical oxygen abundances.

Geologic controls on regional and local erosion rates of three northern Gulf of Mexico barrier-island systems

USGS Publications Warehouse

Twitchell, David C.; Flocks, James G.; Pendleton, Elizabeth; Baldwin, Wayne E.

2013-01-01

The stratigraphy of sections of three barrier island systems in the northeastern Gulf of Mexico (Apalachicola, Mississippi, and Chandeleur) have been mapped using geophysical and coring techniques to assess the influence of geologic variations in barrier lithosomes and adjoining inner shelf deposits on long-term rates of shoreline change at regional and local scales. Regional scale was addressed by comparing average geologic characteristics of the three areas with mean shoreline-change rates for each area. Regionally, differences in sand volume contained within the part of the barrier lithosome above sea level, sand volume on the inner shelf, and to a lesser extent, sediment grain size correlate with shoreline change rates. Larger sand volumes and coarser grain sizes are found where erosion rates are lower. Local scale was addressed by comparing alongshore variations in barrier island and inner shelf geology with alongshore variations in shoreline change. Locally, long-term shoreline change rates are highest directly shoreward of paleovalleys exposed on the inner shelf. While geology is not the sole explanation for observed differences in shoreline change along these three coastal regions, it is a significant contributor to change variability.

Seismo-Ionospheric Coupling as Intensified EIA Observed by Satellite Electron Density and GPS-TEC Data

NASA Astrophysics Data System (ADS)

Ryu, K.; Jangsoo, C.; Kim, S. G.; Jeong, K. S.; Parrot, M.; Pulinets, S. A.; Oyama, K. I.

2014-12-01

Examples of intensified EIA features temporally and spatially related to large earthquakes observed by satellites and GPS-TEC are introduced. The precursory, concurrent, and ex-post enhancements of EIA represented by the equatorial electron density, which are thought to be related to the M8.7 Northern Sumatra earthquake of March 2005, the M8.0 Pisco earthquake of August 2007, and the M7.9 Wenchuan Earthquake of 12 May 2008, are shown with space weather condition. Based on the case studies, statistical analysis on the ionospheric electron density data measured by the Detection of Electro-Magnetic Emissions Transmitted from Earthquake Regions satellite (DEMETER) over a period of 2005-2010 was executed in order to investigate the correlation between seismic activity and equatorial plasma density variations. To simplify the analysis, three equatorial regions with frequent earthquakes were selected and then one-dimensional time series analysis between the daily seismic activity indices and the EIA intensity indices were performed for each region with excluding the possible effects from the geomagnetic and solar activity. The statistically significant values of the lagged cross-correlation function, particularly in the region with minimal effects of longitudinal asymmetry, indicate that some of the very large earthquakes with M > 7.0 in the low latitude region can accompany observable seismo-ionospheric coupling phenomena in the form of EIA enhancements, even though the seismic activity is not the most significant driver of the equatorial ionospheric evolution. The physical mechanisms of the seismo-ionospheric coupling to explain the observation and the possibility of earthquake prediction using the EIA intensity variation are discussed.

Relative contributions of neutral and non-neutral genetic differentiation to inform conservation of steelhead trout across highly variable landscapes

PubMed Central

Matala, Andrew P; Ackerman, Michael W; Campbell, Matthew R; Narum, Shawn R

2014-01-01

Mounting evidence of climatic effects on riverine environments and adaptive responses of fishes have elicited growing conservation concerns. Measures to rectify population declines include assessment of local extinction risk, population ecology, viability, and genetic differentiation. While conservation planning has been largely informed by neutral genetic structure, there has been a dearth of critical information regarding the role of non-neutral or functional genetic variation. We evaluated genetic variation among steelhead trout of the Columbia River Basin, which supports diverse populations distributed among dynamic landscapes. We categorized 188 SNP loci as either putatively neutral or candidates for divergent selection (non-neutral) using a multitest association approach. Neutral variation distinguished lineages and defined broad-scale population structure consistent with previous studies, but fine-scale resolution was also detected at levels not previously observed. Within distinct coastal and inland lineages, we identified nine and 22 candidate loci commonly associated with precipitation or temperature variables and putatively under divergent selection. Observed patterns of non-neutral variation suggest overall climate is likely to shape local adaptation (e.g., potential rapid evolution) of steelhead trout in the Columbia River region. Broad geographic patterns of neutral and non-neutral variation demonstrated here can be used to accommodate priorities for regional management and inform long-term conservation of this species. PMID:25067950

Variation characteristics of nitrogen concentrations through forest hydrologic subcycles in various forests across mainland China.

PubMed

Sun, Suqi; Wang, Yunqi; Wang, Yujie; Zhang, Huilan; Yu, Lei; Liu, Yong; Zhu, Jinqi

2015-01-01

Increased anthropogenic nitrogen emissions and more severe environmental issues (e.g. air pollution, soil acidification, and plant nutrient imbalances) are striking forest ecosystems. Data on NH4+ and NO3- concentrations in throughfall and stemflow were collected to estimate variation characteristics of nitrogen concentrations through forest hydrological processes across China. A typical study was carried out in the three forest types in the Jinyun Mountain region of Chongqing, from May to October 2012. Nitrogen concentrations in throughfall and stemflow are higher than those in atmospheric precipitation. DIN concentrations in atmospheric precipitation, throughfall, and stemflow, across China and in the Jinyun Mountain region, were 2.18 and 1.51, 3.19 and 3.88, and 5.14 and 3.92 mg N L(-1), respectively. NH4+ concentration was higher than NO3- concentration, suggesting NH4+ is the dominant nitrogen component in China. Additionally, across China, a linear relationship existed between DIN and NH4+, and between DIN and NO3- in atmospheric precipitation. DIN concentrations in throughfall and stemflow changed with the observed changes in precipitation, and DIN concentrations in precipitation positively correlated with those in throughfall and in stemflow were also observed. Moreover, average DIN concentrations in throughfall and stemflow varied in different forest types, resulting from differences in forest canopy structures and tree species characteristics. In the Jinyun Mountain region, both throughfall and stemflow DIN concentrations were the highest in the mixed broadleaved/coniferous forest, followed by evergreen broadleaved forest, and the lowest in moso bamboo forest. Monthly variations of NH4+ and NO3- concentrations, in throughfall and stemflow, were observed in the Jinyun Mountain region.

Imaging observation of quasi-periodic disturbances' amplitudes increasing with height in the polar region of the solar corona

DOE Office of Scientific and Technical Information (OSTI.GOV)

Su, J. T.; Priya, T. G.; Liu, Y.

At present, there have been few extreme ultraviolet (EUV) imaging observations of spatial variations of the density perturbations due to the slow magnetoacoustic waves (SMWs) propagating along the solar coronal magnetic fields. In this paper, we present such observations taken from the polar region of the corona with the Atmospheric Imaging Assembly (AIA) on board the Solar Dynamics Observatory and investigate the amplitude of quasi-periodic propagating disturbances that increase with height in the lower corona (0-9 Mm over the solar limb). We statistically determined the following parameters associated with the disturbances: pressure scale height, period, and wavelength in AIA 171more » Å, 193 Å, and 211 Å channels. The scale height and wavelength are dependent of temperature, while the period is independent of temperature. The acoustic velocities inferred from the scale height highly correlate with the ratios of wavelength to period, i.e., phase speeds. They provide evidence that the propagating disturbances in the lower corona are likely SMWs and the spatial variations in EUV intensity in the polar region likely reflects the density compressional effect by the propagating SMWs.« less

Relationship of the interplanetary electric field to the high-latitude ionospheric electric field and currents Observations and model simulation

NASA Technical Reports Server (NTRS)

Clauer, C. R.; Banks, P. M.

1986-01-01

The electrical coupling between the solar wind, magnetosphere, and ionosphere is studied. The coupling is analyzed using observations of high-latitude ion convection measured by the Sondre Stromfjord radar in Greenland and a computer simulation. The computer simulation calculates the ionospheric electric potential distribution for a given configuration of field-aligned currents and conductivity distribution. The technique for measuring F-region in velocities at high time resolution over a large range of latitudes is described. Variations in the currents on ionospheric plasma convection are examined using a model of field-aligned currents linking the solar wind with the dayside, high-latitude ionosphere. The data reveal that high-latitude ionospheric convection patterns, electric fields, and field-aligned currents are dependent on IMF orientation; it is observed that the electric field, which drives the F-region plasma curve, responds within about 14 minutes to IMF variations in the magnetopause. Comparisons of the simulated plasma convection with the ion velocity measurements reveal good correlation between the data.

Distribution and variation of mercury in frozen soils of a high-altitude permafrost region on the northeastern margin of the Tibetan Plateau.

PubMed

Sun, Shiwei; Kang, Shichang; Huang, Jie; Chen, Shengyun; Zhang, Qianggong; Guo, Junming; Liu, Wenjie; Neupane, Bigyan; Qin, Dahe

2017-06-01

The Tibetan Plateau (TP) is home to the largest permafrost bodies at low- and mid-latitudes, yet little is known about the distribution and variation of mercury (Hg) in frozen soil of the permafrost regions. In this study, extensive soil sampling campaigns were carried out in 23 soil pits from 12 plots in a high-altitude permafrost region of the Shule River Basin, northeastern TP. Hg distribution, variation, and their dependences on soil properties were analyzed. The results have revealed that total Hg (THg) concentrations were low ranging from 6.3 to 29.1 ng g -1 . A near-surface peak of THg concentrations followed by a continuous decrease were observed on the vertical profiles of most soil pits. Significant positive relationships among THg concentrations, soil organic carbon (SOC) contents, and silty fractions were observed, indicating that SOC content and silty fraction are two dominant factors influencing the spatial distribution of THg. THg concentrations in soils showed a decreasing trend with altitude, which was probably attributed to a lower soil potential to Hg accumulation under the condition of lower SOC contents and silty fractions at high altitudes. Approximately, 130.6 t Hg in soils (0-60 cm) was estimated and a loss of 64.2% of Hg from the highly stable and stable permafrost (H-SP) region via permafrost degradation was expected in the upstream regions of the Shule River Basin, indicating that the large areas of permafrost regions may become an important source of global Hg emission as a result of the ongoing widespread permafrost degradation.

Hermes Transposon Distribution and Structure in Musca domestica

PubMed Central

Subramanian, Ramanand A.; Cathcart, Laura A.; Krafsur, Elliot S.; Atkinson, Peter W.

2009-01-01

Hermes are hAT transposons from Musca domestica that are very closely related to the hobo transposons from Drosophila melanogaster and are useful as gene vectors in a wide variety of organisms including insects, planaria, and yeast. hobo elements show distinct length variations in a rapidly evolving region of the transposase-coding region as a result of expansions and contractions of a simple repeat sequence encoding 3 amino acids threonine, proline, and glutamic acid (TPE). These variations in length may influence the function of the protein and the movement of hobo transposons in natural populations. Here, we determine the distribution of Hermes in populations of M. domestica as well as whether Hermes transposase has undergone similar sequence expansions and contractions during its evolution in this species. Hermes transposons were found in all M. domestica individuals sampled from 14 populations collected from 4 continents. All individuals with Hermes transposons had evidence for the presence of intact transposase open reading frames, and little sequence variation was observed among Hermes elements. A systematic analysis of the TPE-homologous region of the Hermes transposase-coding region revealed no evidence for length variation. The simple sequence repeat found in hobo elements is a feature of this transposon that evolved since the divergence of hobo and Hermes. PMID:19366812

Hadron multiplicity variation with Q2 and scale breaking of the Hadron distributions in deep inelastic muon-proton scattering

NASA Astrophysics Data System (ADS)

Arneodo, M.; Arvidson, A.; Aubert, J. J.; Badelek, B.; Beaufays, J.; Bee, C. P.; Benchouk, C.; Berghoff, G.; Bird, I.; Blum, D.; Böhm, E.; de Bouard, X.; Brasse, F. W.; Braun, H.; Broll, C.; Brown, S.; Brück, H.; Calen, H.; Chima, J. S.; Ciborowski, J.; Clifft, R.; Coignet, G.; Combley, F.; Coughlan, J.; D'Agostini, G.; Dahlgren, S.; Dengler, F.; Derado, I.; Dreyer, T.; Drees, J.; Düren, M.; Eckardt, V.; Edwards, A.; Edwards, M.; Ernst, T.; Eszes, G.; Favier, J.; Ferrero, M. I.; Figiel, J.; Flauger, W.; Foster, J.; Gabathuler, E.; Gajewski, J.; Gamet, R.; Gayler, J.; Geddes, N.; Giubellino, P.; Grafström, P.; Grard, F.; Haas, J.; Hagberg, E.; Hamacher, K.; Hasert, F. J.; Hayman, P.; Heusse, P.; Jaffré, M.; Jacholkowska, A.; Janata, F.; Jancso, G.; Johnson, A. S.; Kabuss, E. M.; Kellner, G.; Korbel, V.; Korzen, B.; Krüger, J.; Kullander, S.; Landgraf, U.; Lanske, D.; Loken, J.; Long, K.; Malecki, P.; Maire, M.; Manz, A.; Maselli, S.; Mohr, W.; Montanet, F.; Montgomery, H. E.; Nagy, E.; Nassalski, J.; Norton, P. R.; Oakham, F. G.; Osborne, A. M.; Pascaud, C.; Pawlik, B.; Payre, P.; Peroni, C.; Peschel, H.; Pessard, H.; Pettingale, J.; Pietrzyk, B.; Pietrzyk, U.; Pönsgen, B.; Pötsch, M.; Preissner, H.; Renton, P.; Ribarics, P.; Rith, K.; Rondio, E.; Scheer, M.; Schlagböhmer, A.; Schiemann, H.; Schmitz, N.; Schneegans, M.; Schneider, A.; Sholz, M.; Schröder, T.; Schouten, M.; Schultze, K.; Sloan, T.; Stier, H. E.; Stockhausen, W.; Studt, M.; Taylor, G. N.; Thénard, J. M.; Thompson, J. C.; de La Torre, A.; Toth, J.; Urban, L.; Urban, L.; Wallucks, W.; Whalley, M.; Wheeler, S.; Williams, W. S. C.; Wimpenny, S. J.; Windmolders, R.; Wolf, G.

1985-12-01

Measurements are presented of the variation with Q2 (scaling violation) of the hadron multiplicity in deep inelastic muon-proton scattering. An increase in the average multiplicity of both the charged hadrons and K0 mesons is observed with increasing Q2 or xBj for fixed centre-of-mass energy W. The study of the shape of the effective fragmentation function Dh (z, W, Q2) shows that the increase of the particle yield with Q2 takes place for low z particles. The variation of the hadron distributions with Q2 is also studied in the current fragmentation region where a decrease in multiplicity is observed. Such effects are expected from QCD.

How important are determinants of obesity measured at the individual level for explaining geographic variation in body mass index distributions? Observational evidence from Canada using Quantile Regression and Blinder-Oaxaca Decomposition.

PubMed

Dutton, Daniel J; McLaren, Lindsay

2016-04-01

Obesity prevalence varies between geographic regions in Canada. The reasons for this variation are unclear but most likely implicate both individual-level and population-level factors. The objective of this study was to examine whether equalising correlates of body mass index (BMI) across these geographic regions could be reasonably expected to reduce differences in BMI distributions between regions. Using data from three cycles of the Canadian Community Health Survey (CCHS) 2001, 2003 and 2007 for males and females, we modelled between-region BMI cross-sectionally using quantile regression and Blinder-Oaxaca decomposition of the quantile regression results. We show that while individual-level variables (ie, age, income, education, physical activity level, fruit and vegetable consumption, smoking status, drinking status, family doctor status, rural status, employment in the past 12 months and marital status) may be Caucasian important correlates of BMI within geographic regions, those variables are not capable of explaining variation in BMI between regions. Equalisation of common correlates of BMI between regions cannot be reasonably expected to reduce differences in the BMI distributions between regions. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/

In situ Observations of Magnetosonic Waves Modulated by Background Plasma Density

NASA Astrophysics Data System (ADS)

Yu, X.; Yuan, Z.; Huang, S.; Wang, D.; Funsten, H. O.

2017-12-01

We report in situ observations by the Van Allen Probe mission that magnetosonic (MS) waves are clearly relevant to appear relevant to the background plasma number density. As the satellite moved across dense and tenuous plasma alternatively, MS waves occurred only in lower density region. As the observed protons with 'ring' distributions provide free energy, local linear growth rates are calculated and show that magnetosonic waves can be locally excited in tenuous plasma. With variations of the background plasma density, the temporal variations of local wave growth rates calculated with the observed proton ring distributions, show a remarkable agreement with those of the observed wave amplitude. Therefore, the paper provides a direct proof that background plasma densities can modulate the amplitudes of magnetosonic waves through controlling the wave growth rates.

Longitudinal and Cross-Sectional Genetic Diversity in the Korean Peninsula Based on the P vivax Merozoite Surface Protein Gene.

PubMed

Kim, Jung-Yeon; Suh, Eun-Jung; Yu, Hyo-Soon; Jung, Hyun-Sik; Park, In-Ho; Choi, Yien-Kyeoug; Choi, Kyoung-Mi; Cho, Shin-Hyeong; Lee, Won-Ja

2011-12-01

Vivax malaria has reemerged and become endemic in Korea. Our study aimed to analyze by both longitudinal and cross-sectional genetic diversity of this malaria based on the P vivax Merozoite Surface Protein (PvMSP) gene parasites recently found in the Korean peninsula. PvMSP-1 gene sequence analysis from P vivax isolates (n = 835) during the 1996-2010 period were longitudinally analyzed and the isolates from the Korean peninsula through South Korea, the demilitarized zone and North Korea collected in 2008-2010 were enrolled in an overall analysis of MSP-1 gene diversity. New recombinant subtypes and severe multiple-cloneinfection rates were observed in recent vivax parasites. Regional variation was also observed in the study sites. This study revealed the great complexity of genetic variation and rapid dissemination of genes in P vivax. It also showed interesting patterns of diversity depending, on the region in the Korean Peninsula. Understanding the parasiteninsula. Under genetic variation may help to analyze trends and assess the extent of endemic malaria in Korea.

Populations of Erythrina velutina Willd. at risk of extinction.

PubMed

Melo, M F V; Gonçalves, L O; Rabbani, A R C; Álvares-Carvalho, S V; Pinheiro, J B; Zucchi, M I; Silva-Mann, R

2015-08-28

The goal of this study was to characterize the structure of two natural populations of the coral tree using RAPD and ISSR markers. The study evaluated all individuals in two different areas in the northeastern region of Brazil: the first was in the riparian area, 10 km x 100 m along the edge of the lower São Francisco River, and the second was in the municipality of Pinhão, in a semiarid region between the municipalities of Neópolis and Santana do São Francisco. We used all the coral trees present in those two areas (37 individuals). The results of the RAPD and ISSR markers were highly congruent, supporting the reliability of the techniques used. Similarity was estimated using the Jaccard arithmetic complement index. A dendrogram was constructed using the unweighted pair group method with arithmetic mean cluster algorithm, and the robustness of the data was bootstrapped with 5000 replicates. A principal coordinate analysis was performed on the basis of Jaccard coefficients. The total genetic variation observed was 21%, corresponding to the variation between the populations, and 79% of the variation was observed within the populations.

Using GMD Data, AIRS Measurements, and the NASA Chemistry-Climate Model to Reveal Regional and Seasonal Variation of Methane

NASA Astrophysics Data System (ADS)

Steele, K. J.; Duncan, B. N.; Warner, J. X.; Nielsen, J. E.

2010-12-01

The concentration of methane (CH4) has more than doubled in the atmosphere since the preindustrial era due to a change in source-sink interactions. Many studies have aimed to quantify CH4 source contributions, but 1) the long tropospheric lifetime of CH4, resulting in a high background concentration, 2) along with sources often having overlapping distributions, and 3) the uncertainty in the chemical sink of CH4 with the hydroxyl radical makes it difficult to constrain inputs to the CH4 budget. The purpose of this study was to use a variety of observations in conjunction with the NASA GEOS-5 climate-chemistry model (CCM) to better understand regional and seasonal variation in atmospheric CH4. Seasonal variation in surface in situ data from the NOAA ESRL Global Monitoring Division (GMD) and data from the Japanese Airlines (JAL) in the upper troposphere (UT) were compared to satellite observations recorded by the Atmospheric Infrared Sounder (AIRS) on the EOS/Aqua satellite, which is most sensitive to CH4 in the UT. There was more variability in CH4 at the GMD sites than in the JAL data or AIRS because the GMD sites are closer to the source. As the CH4 is lofted into the UT, it mixes with the background CH4 so the seasonal variation is dampened. The JAL data followed the AIRS observations as expected. There was less variability in all measurements in the Southern Hemisphere and over oceans because these areas are farther away from sources. While the observations from AIRS, JAL flights, and the GMD sites provide valuable information regarding source locations and atmospheric CH4 concentration, it is important to understand which CH4 sources have the largest contribution to CH4 emissions in different regions of the world and the influence of these sources on the global CH4 cycle. Model output from the GEOS-5 CCM was used to monitor individual CH4 sources (e.g. from rice production, wetlands, biofuel use, etc.) as they are transported from the surface to the UT. The model revealed that variation in source strength is dependent on the site location in relation to the source strength. Assessing CH4 source contributions to the UT revealed that variability is affected by seasonal variation in the sources convolved with seasonal variation in deep convection. More work is needed in order to constrain sources of atmospheric CH4. However, surface and tropospheric in situ data can be used to validate AIRS observations so that CH4 can be monitored at a global scale, and CCM output can aid in determining which sources have the largest contribution to atmospheric CH4.

Can the envisaged reductions of fossil fuel CO2 emissions be detected by atmospheric observations?

PubMed

Levin, Ingeborg; Rödenbeck, Christian

2008-03-01

The lower troposphere is an excellent receptacle, which integrates anthropogenic greenhouse gases emissions over large areas. Therefore, atmospheric concentration observations over populated regions would provide the ultimate proof if sustained emissions changes have occurred. The most important anthropogenic greenhouse gas, carbon dioxide (CO(2)), also shows large natural concentration variations, which need to be disentangled from anthropogenic signals to assess changes in associated emissions. This is in principle possible for the fossil fuel CO(2) component (FFCO(2)) by high-precision radiocarbon ((14)C) analyses because FFCO(2) is free of radiocarbon. Long-term observations of (14)CO(2) conducted at two sites in south-western Germany do not yet reveal any significant trends in the regional fossil fuel CO(2) component. We rather observe strong inter-annual variations, which are largely imprinted by changes of atmospheric transport as supported by dedicated transport model simulations of fossil fuel CO(2). In this paper, we show that, depending on the remoteness of the site, changes of about 7-26% in fossil fuel emissions in respective catchment areas could be detected with confidence by high-precision atmospheric (14)CO(2) measurements when comparing 5-year averages if these inter-annual variations were taken into account. This perspective constitutes the urgently needed tool for validation of fossil fuel CO(2) emissions changes in the framework of the Kyoto protocol and successive climate initiatives.

Spatiotemporal variation in the postseismic deformation of the 2011 Tohoku-oki earthquake revealed by seafloor geodetic observations

NASA Astrophysics Data System (ADS)

Tomita, F.; Kido, M.; Ohta, Y.; Hino, R.; Iinuma, T.

2016-12-01

Postseismic deformation following the 2011 Tohoku-oki earthquake has been detected by on- and off-shore geodetic observations. GPS/Acoustic (GPS/A) observations [Watanabe et al., 2014, GRL] just above the coseismic primary rupture area (PRA) show significant landward movement in contrast to the trench-ward movement of the on-shore GPS observations, which can be generally explained by viscoelastic relaxation [Sun et al., 2014, Nature]. Furthermore, Tomita et al. [2015, AGU] demonstrated along-trench variation of the postseismic deformation also using GPS/A observations. In this study, we show detailed spatiotemporal characteristics of the postseismic deformation using updated GPS/A measurement results. We employed 20 GPS/A sites located in Tohoku-oki region and had conducted repeated campaign surveys from Sep. 2012 to May 2016. GPS/A positioning was performed using the method of Kido et al. [2006, EPS]. Then, we calculated postseismic displacement rates by applying a weighted robust linear fitting. The updated results of the postseismic displacement rates are consistent with the characteristic revealed by Tomita et al. [2015] but are estimated with better precision ( 2 cm/yr in 1σ). The sites in the north region of PRA show slight trenchward movement (< 5 cm/yr), while the sites in the south region of PRA show significant trenchward movement (5-15 cm/yr) indicating dominance of the afterslip effects. Moreover, the sites above PRA show significant landward movement (10-15 cm/yr) indicating viscoelastic relaxation and interplate relocking effects. Furthermore, the updated results may show temporal decay of afterslip; the temporally decaying displacements have been observed in the south region of PRA. However, such a temporal decay has not been measured in the region where viscoelastic relaxation causes significant deformation. In the presentation, we will discuss detail spatiotemporal evolution of the postseismic deformation processes from the updated results by comparing with other geodetic observations and studies on the postseismic deformation modeling.

Seasonal variations in the stable oxygen isotope ratio of wood cellulose reveal annual rings of trees in a Central Amazon terra firme forest.

PubMed

Ohashi, Shinta; Durgante, Flávia M; Kagawa, Akira; Kajimoto, Takuya; Trumbore, Susan E; Xu, Xiaomei; Ishizuka, Moriyoshi; Higuchi, Niro

2016-03-01

In Amazonian non-flooded forests with a moderate dry season, many trees do not form anatomically definite annual rings. Alternative indicators of annual rings, such as the oxygen (δ(18)Owc) and carbon stable isotope ratios of wood cellulose (δ(13)Cwc), have been proposed; however, their applicability in Amazonian forests remains unclear. We examined seasonal variations in the δ(18)Owc and δ(13)Cwc of three common species (Eschweilera coriacea, Iryanthera coriacea, and Protium hebetatum) in Manaus, Brazil (Central Amazon). E. coriacea was also sampled in two other regions to determine the synchronicity of the isotopic signals among different regions. The annual cyclicity of δ(18)Owc variation was cross-checked by (14)C dating. The δ(18)Owc showed distinct seasonal variations that matched the amplitude observed in the δ(18)O of precipitation, whereas seasonal δ(13)Cwc variations were less distinct in most cases. The δ(18)Owc variation patterns were similar within and between some individual trees in Manaus. However, the δ(18)Owc patterns of E. coriacea differed by region. The ages of some samples estimated from the δ(18)Owc cycles were offset from the ages estimated by (14)C dating. In the case of E. coriacea, this phenomenon suggested that missing or wedging rings may occur frequently even in well-grown individuals. Successful cross-dating may be facilitated by establishing δ(18)Owc master chronologies at both seasonal and inter-annual scales for tree species with distinct annual rings in each region.

Cultural influences on neural basis of intergroup empathy.

PubMed

Cheon, Bobby K; Im, Dong-Mi; Harada, Tokiko; Kim, Ji-Sook; Mathur, Vani A; Scimeca, Jason M; Parrish, Todd B; Park, Hyun Wook; Chiao, Joan Y

2011-07-15

Cultures vary in the extent to which people prefer social hierarchical or egalitarian relations between individuals and groups. Here we examined the effect of cultural variation in preference for social hierarchy on the neural basis of intergroup empathy. Using cross-cultural neuroimaging, we measured neural responses while Korean and American participants observed scenes of racial ingroup and outgroup members in emotional pain. Compared to Caucasian-American participants, Korean participants reported experiencing greater empathy and elicited stronger activity in the left temporo-parietal junction (L-TPJ), a region previously associated with mental state inference, for ingroup compared to outgroup members. Furthermore, preferential reactivity within this region to the pain of ingroup relative to outgroup members was associated with greater preference for social hierarchy and ingroup biases in empathy. Together, these results suggest that cultural variation in preference for social hierarchy leads to cultural variation in ingroup-preferences in empathy, due to increased engagement of brain regions associated with representing and inferring the mental states of others. Copyright © 2011 Elsevier Inc. All rights reserved.

Global climatology of planetary boundary layer top obtained from multi-satellite GPS RO observations

NASA Astrophysics Data System (ADS)

Basha, Ghouse; Kishore, P.; Ratnam, M. Venkat; Ravindra Babu, S.; Velicogna, Isabella; Jiang, Jonathan H.; Ao, Chi O.

2018-05-01

Accurate estimation of the planetary boundary layer (PBL) top is essential for air quality prediction, weather forecast, and assessment of regional and global climate models. In this article, the long-term climatology of seasonal, global distribution of PBL is presented by using global positioning system radio occultation (GPSRO) based payloads such as Constellation Observing System for Meteorology, Ionosphere, and Climate (COSMIC), Communication/Navigation Outage Forecast System (C/NOFS), TerraSAR-X, and The Gravity Recovery and Climate Experiment (GRACE) from the year 2006-2015. We used Wavelet Covariance Transform (WCT) technique for precise PBL top identification. The derived PBL top from GPSRO data is rigorously evaluated with GPS radiosonde data over Gadanki. Significant seasonal variation is noticed in both radiosonde and GPSRO observations. Further, we compared the PBL obtained GPS RO with global radiosonde network and observed very good correlation. The number of occultations reaching down to 500 m and retrieval rate of PBL top from WCT method is very high in mid-latitudes compared to tropical latitudes. The global distribution of PBL top shows significant seasonal variation with higher during summer followed by spring, fall, and minimum in winter. In the vicinity of Inter Tropical Convergence Zone (ITCZ), the PBL top is high over eastern Pacific compared to other regions. The ERA-Interim reanalysis data underestimate the PBL top compared to GPS RO observations due to different measurement techniques. The seasonal variation of global averaged PBL top over land and ocean shows contrasting features at different latitude bands.

GF-1 and Landsat observed a 40-year wetland spatiotemporal variation and its coupled environmental factors in Yangtze River estuary

NASA Astrophysics Data System (ADS)

Sun, Nan; Zhu, Weining; Cheng, Qian

2018-07-01

Wetlands are health indicators of aquatic ecosystems and also vulnerable to regional environmental and socio-economic changes. For exploring wetland spatiotemporal variations in estuarine and coastal regions of the Yangtze River, we extracted wetland information from 40-year time-series images of Landsat, GF-1, and other satellites, using the classification method of decision tree. Potential environmental and socio-economic factors which may drive wetland variations were analyzed. Results show that the wetland area in Yangtze River estuary has increased 663 km2, but it was only contributed by the increasing of human-made wetlands (767 km2), which were mostly caused by economic growth and constructions of human-made hydro-projects in Yangtze Delta. In comparison, natural wetlands, such as tidal flats and marshes, have decreased 163 km2. Land reclamation has changed these natural wetlands into reservoirs, aquaculture ponds and paddy fields. Wetlands in Shanghai and Qidong urban regions were mainly affected by human activities, while wetland variations in Chongming Island were mainly controlled by natural factors such as the upstream discharge, precipitation, diurnal variation of tidal level and long-term sea level rising. The general trend is that the natural wetland was transformed into the human-made wetland, and the human-made wetland was transformed into construction land.

Nucleotide sequence variation at two genes of the phenylpropanoid pathway, the FAH1 and F3H genes, in Arabidopsis thaliana.

PubMed

Aguadé, M

2001-01-01

The FAH1 and F3H genes encode ferulate-5-hydroxylase and flavanone-3-hydroxylase, which are enzymes in the pathways leading to the synthesis of sinapic acid esters and flavonoids, respectively. Nucleotide variation at these genes was surveyed by sequencing a sample of 20 worldwide Arabidopsis thaliana ecotypes and one Arabidopsis lyrata spp. petraea stock. In contrast with most previously studied genes, the percentage of singletons was rather low in both the FAH1 and the F3H gene regions. There was, therefore, no footprint of a recent species expansion in the pattern of nucleotide variation in these regions. In both FAH1 and F3H, nucleotide variation was structured into two major highly differentiated haplotypes. In both genes, there was a peak of silent polymorphism in the 5' part of the coding region without a parallel increase in silent divergence. In FAH1, the peak was centered at the beginning of the second exon. In F3H, nucleotide diversity was highest at the beginning of the gene. The observed pattern of variation in both FAH1 and F3H, although suggestive of balancing selection, was compatible with a neutral model with no recombination.

Passive microwave structure of severe tornadic storms on 16 November 1987

NASA Technical Reports Server (NTRS)

Heymsfield, Gerald M.; Fulton, Richard

1994-01-01

Passive microwave observations using the Special Sensor Microwave/Imager (SSM/I) are presented for severe tornadic storms in the lower midwestern United States on 16 November 1987. These measurements are compared with Geostationary Operational Environmental Satellite infrared (IR) measurements for the same case. The IR observations had a classic 'V' cold feature commonly associated with severe Midwest thunderstorms. The minimum microwave brightness temperatures at 86 GHz, which primarily respond to ice scattering by larger ice particles, were located in the convective region and the warm interior of the anvil top, between the arms of the IR V feature. The interior warm region was the only portion of the entire anvil region that had high 86-GHz polarization difference temperatures. Microphysical implications of these multispectral observations are discussed. The observations suggest that there are large variations of ice microphysical characteristics spatially and vertically in the anvil region. These observations are discussed in the context of previous dynamical and microphysical hypotheses on the IR V feature.

Circumstantial Starbirth in Starbursts: Systematic Variations in the Stellar and Nebular Content of Giant HII Regions in the Local Group Galaxy M33

NASA Astrophysics Data System (ADS)

Waller, W. H.; Murphy, E. J.; Gherz, R. D.; Polomski, E.; Woodward, C. E.; Fazio, G. G.; Rieke, G. H.; Spitzer/M33 Research Team

2005-12-01

From the Orion Nebula to the Hubble Deep Field, starburst activity can be seen transforming galaxian clouds of gas into populous clusters of stars. The pyrotechnics and chemical enrichment associated with this activity have led to outcomes as ubiquitous as interstellar dust and as exquisite as life on Earth. In this talk, I will focus on the circumstances of star formation in the environmental context of ongoing starburst activity. I begin with the premises that (1) the formation of a single star takes time, (2) the formation of a populous cluster takes even more time, and (3) ''stuff'' happens in the interim. Hubble images of the Orion Nebula and Eagle Nebula show how hot stars can excavate neighboring clouds of gas and photoevaporate the star-forming cores that are exposed. Hubble observations of giant HII regions in M33 reveal a significant variation in the stellar populations, such that the most metal-rich HII regions contain the greatest proportions of the most massive stars. ISO and Spitzer observations of these same HII regions reveal corresponding variations in the nebular content. These multi-wavelength diagnostics of the stellar-nebular feedback in galaxian starbursts suggest a star-forming mechanism which is subject to photo-evaporative ablation -- an erosive process that is systematically mediated by the metal abundance and corresponding amounts of protective dust in the starbursting environment.

Investigation of the relationship between ionospheric foF2 and earthquakes

NASA Astrophysics Data System (ADS)

Karaboga, Tuba; Canyilmaz, Murat; Ozcan, Osman

2018-04-01

Variations of the ionospheric F2 region critical frequency (foF2) have been investigated statistically before earthquakes during 1980-2008 periods in Japan area. Ionosonde data was taken from Kokubunji station which is in the earthquake preparation zone for all earthquakes. Standard Deviations and Inter-Quartile Range methods are applied to the foF2 data. It is observed that there are anomalous variations in foF2 before earthquakes. These variations can be regarded as ionospheric precursors and may be used for earthquake prediction.

Geographic Variations in Incremental Costs of Heart Disease Among Medicare Beneficiaries, by Type of Service, 2012.

PubMed

Wakim, Rita; Ritchey, Matthew; Hockenberry, Jason; Casper, Michele

2016-12-29

Using 2012 data on fee-for-service Medicare claims, we documented regional and county variation in incremental standardized costs of heart disease (ie, comparing costs between beneficiaries with heart disease and beneficiaries without heart disease) by type of service (eg, inpatient, outpatient, post-acute care). Absolute incremental total costs varied by region. Although the largest absolute incremental total costs of heart disease were concentrated in southern and Appalachian counties, geographic patterns of costs varied by type of service. These data can be used to inform development of policies and payment models that address the observed geographic disparities.

Extracting Compositional Variation from THEMIS Data for Features with Large Topography on Mars Via Atmospheric Equalization

NASA Technical Reports Server (NTRS)

Anderson, F. S.; Drake, J. S.; Hamilton, V. E.

2005-01-01

We have developed a means of equalizing the atmospheric signature in Mars Odyssey Thermal Emission Imaging System (THEMIS) infrared data over regions with large topography such as the Valles Marineris (VM). This equalization allows for the analysis of compositional variations in regions that previously have been difficult to study because of the large differences in atmospheric path length that result from large changes in surface elevation. Specifically, our motivation for this study is to examine deposits that are small at the scales observable by the Thermal Emission Spectrometer (TES) onboard Mars Global Surveyor, but which are more readily resolved with THEMIS.

Fast variability of tera-electron volt gamma rays from the radio galaxy M87.

PubMed

Aharonian, F; Akhperjanian, A G; Bazer-Bachi, A R; Beilicke, M; Benbow, W; Berge, D; Bernlöhr, K; Boisson, C; Bolz, O; Borrel, V; Braun, I; Brown, A M; Bühler, R; Büsching, I; Carrigan, S; Chadwick, P M; Chounet, L-M; Coignet, G; Cornils, R; Costamante, L; Degrange, B; Dickinson, H J; Djannati-Ataï, A; Drury, L O'c; Dubus, G; Egberts, K; Emmanoulopoulos, D; Espigat, P; Feinstein, F; Ferrero, E; Fiasson, A; Fontaine, G; Funk, Seb; Funk, S; Füssling, M; Gallant, Y A; Giebels, B; Glicenstein, J F; Goret, P; Hadjichristidis, C; Hauser, D; Hauser, M; Heinzelmann, G; Henri, G; Hermann, G; Hinton, J A; Hoffmann, A; Hofmann, W; Holleran, M; Hoppe, S; Horns, D; Jacholkowska, A; de Jager, O C; Kendziorra, E; Kerschhaggl, M; Khélifi, B; Komin, Nu; Konopelko, A; Kosack, K; Lamanna, G; Latham, I J; Le Gallou, R; Lemière, A; Lemoine-Goumard, M; Lenain, J-P; Lohse, T; Martin, J M; Martineau-Huynh, O; Marcowith, A; Masterson, C; Maurin, G; McComb, T J L; Moulin, E; de Naurois, M; Nedbal, D; Nolan, S J; Noutsos, A; Orford, K J; Osborne, J L; Ouchrif, M; Panter, M; Pelletier, G; Pita, S; Pühlhofer, G; Punch, M; Ranchon, S; Raubenheimer, B C; Raue, M; Rayner, S M; Reimer, A; Ripken, J; Rob, L; Rolland, L; Rosier-Lees, S; Rowell, G; Sahakian, V; Santangelo, A; Saugé, L; Schlenker, S; Schlickeiser, R; Schröder, R; Schwanke, U; Schwarzburg, S; Schwemmer, S; Shalchi, A; Sol, H; Spangler, D; Spanier, F; Steenkamp, R; Stegmann, C; Superina, G; Tam, P H; Tavernet, J-P; Terrier, R; Tluczykont, M; van Eldik, C; Vasileiadis, G; Venter, C; Vialle, J P; Vincent, P; Völk, H J; Wagner, S J; Ward, M

2006-12-01

The detection of fast variations of the tera-electron volt (TeV) (10(12) eV) gamma-ray flux, on time scales of days, from the nearby radio galaxy M87 is reported. These variations are about 10 times as fast as those observed in any other wave band and imply a very compact emission region with a dimension similar to the Schwarzschild radius of the central black hole. We thus can exclude several other sites and processes of the gamma-ray production. The observations confirm that TeV gamma rays are emitted by extragalactic sources other than blazars, where jets are not relativistically beamed toward the observer.

Atmospheric effects on SMMR and SSM/I 37 GHz polarization difference over the Sahel

NASA Technical Reports Server (NTRS)

Choudhury, B. J.; Major, E. R.; Smith, E. A.; Becker, F.

1992-01-01

The atmospheric effects on the difference of vertically and horizontally polarized brightness temperatures, Delta(T) observed at 37 GHz frequency of the SMMR on board the Nimbus-7 satellite and SSM/I on board the DMSP-F8 satellite are studied over two 2.5 by 2.5 deg regions within the Sahel and Sudan zones of Africa from January 1985 to December 1986 through radiative transfer analysis using surface temperature, atmospheric water vapor, and cloud optical thickness. It is found that atmospheric effects alone cannot explain the observed temporal variation of Delta(T), although the atmosphere introduces important modulations on the observed seasonal variations of Delta(T) due to rather significant seasonal variation of precipitable water vapor. These Delta(T) data should be corrected for atmospheric effects before any quantitative analysis of land surface change over the Sahel and Sudan zones.

Centennial- to decadal-scale monsoon precipitation variations in the upper Hanjiang River region, China over the past 6650 years

NASA Astrophysics Data System (ADS)

Tan, Liangcheng; Cai, Yanjun; Cheng, Hai; Edwards, Lawrence R.; Gao, Yongli; Xu, Hai; Zhang, Haiwei; An, Zhisheng

2018-01-01

The upper Hanjiang River region is the recharge area of the middle route of South-to-North Water Transfer Project. The region is under construction of the Hanjiang-Weihe River Water Transfer Project in China. Monsoon precipitation variations in this region are critical to water resource and security of China. In this study, high-resolution monsoon precipitation variations were reconstructed in the upper Hanjiang River region over the past 6650 years from δ18O and δ13C records of four stalagmites in Xianglong cave. The long term increasing trend of stalagmite δ18O record since the middle Holocene is consistent with other speleothem records from monsoonal China. This trend follows the gradually decreasing Northern Hemisphere summer insolation, which indicates that solar insolation may control the orbital-scale East Asian summer monsoon (EASM) variations. Despite the declined EASM intensity since the middle Holocene, local precipitation may not have decreased remarkably, as revealed by the δ13C records. A series of centennial- to decadal-scale cyclicity was observed, with quasi-millennium-, quasi-century-, 57-, 36- and 22-year cycles by removing the long-term trend of stalagmite δ18O record. Increased monsoon precipitation during periods of 4390-3800 a BP, 3590-2960 a BP, 2050-1670 a BP and 1110-790 a BP had caused four super-floods in the upper reach of Hanjiang River. Dramatically dry climate existed in this region during the 5.0 ka and 2.8 ka events, coinciding with notable droughts in other regions of monsoonal China. Remarkably intensified and southward Westerly jet, together with weakened summer monsoon, may delay the onset of rainy seasons, resulting in synchronous decreasing of monsoon precipitation in China during the two events. During the 4.2 ka event and the Little Ice Age, the upper Hanjiang River region was wet, which was similar to the climate conditions in central and southern China, but was the opposite of drought observed in northern China. We propose that weakened summer monsoon and less strengthened or normal Westerly jet may cause rain belt stay longer in the southward region, which reduced rainfall in northern China but enhanced it in central and southern China.

Functional implications of Major Histocompatibility (MH) variation using estuarine fish populations.

PubMed

Cohen, Sarah; Tirindelli, Joëlle; Gomez-Chiarri, Marta; Nacci, Diane

2006-12-01

Recently, there has been a dramatic expansion of studies of major histocompatibility complex (MHC) variation aimed at discovering functional differences in immunity across wild populations of diverse vertebrate species. Some species with relatively low genetic diversity or under strong directional selection by pathogens have revealed fascinating cases of MHC allelic disease linkage. More generally in genetically diverse species, however, these linkages may be hard to find. In this paper, we review approaches for assessing functional variation in MHC and discuss their potential use for discovering smaller-scale intraspecific spatial and temporal patterns of MHC variation. Then, we describe and illustrate an approach using the structural model to produce a population composite of variation in antigen-binding regions by mapping population-specific substitutions onto functional regions of the molecule. We are producing models of variation in major histocompatibility (MH) loci for populations of non-migratory fish (killifish, Fundulus heteroclitus) resident at sites that vary dramatically in environmental quality. We discuss the goal of relating MH population variation to functional differences in disease susceptibility such as those inferred by observations of parasitic infection and direct measurement of bacterial challenges in the laboratory. Our study has focused on relatively well-studied killifish populations, including those resident in a highly disturbed, chemically contaminated estuary and nearby less contaminated sites. Population-specific genetic changes at MHC antigen-binding loci are described, and evidence relevant to functional implications of these changes is reviewed. Population-specific patterns of variation in antigen-binding regions in combination with a range of assessments of immune function will provide a powerful new approach to reveal functional changes in MHC.

Substorms on Mercury?

NASA Technical Reports Server (NTRS)

Siscoe, G. L.; Ness, N. F.; Yeates, C. M.

1974-01-01

Qualitative similarities between some of the variations in the Mercury encounter data and variations in the corresponding regions of the earth's magnetosphere during substorms are pointed out. The Mariner 10 data on Mercury show a strong interaction between the solar wind and the plant similar to a scaled down version of that for the earth's magnetosphere. Some of the features observed in the night side Mercury magnetosphere suggest time dependent processes occurring there.

Deriving mass balance and calving variations from reanalysis data and sparse observations, Glaciar San Rafael, northern Patagonia, 1950-2005

NASA Astrophysics Data System (ADS)

Koppes, M.; Conway, H.; Rasmussen, L. A.; Chernos, M.

2011-09-01

Mass balance variations of Glaciar San Rafael, the northernmost tidewater glacier in the Southern Hemisphere, are reconstructed over the period 1950-2005 using NCEP-NCAR reanalysis climate data together with sparse, local historical observations of air temperature, precipitation, accumulation, ablation, thinning, calving, and glacier retreat. The combined observations over the past 50 yr indicate that Glaciar San Rafael has thinned and retreated since 1959, with a total mass loss of ~22 km3 of ice eq. Over that period, except for a short period of cooling from 1998-2003, the climate has become progressively warmer and drier, which has resulted primarily in pervasive thinning of the glacier surface and a decrease in calving rates, with only minor acceleration in retreat of the terminus. A comparison of calving fluxes derived from the mass balance variations and from theoretical calving and sliding laws suggests that calving rates are inversely correlated with retreat rates, and that terminus geometry is more important than balance fluxes to the terminus in driving calving dynamics. For Glaciar San Rafael, regional climate warming has not yet resulted in the significant changes in glacier length seen in other calving glaciers in the region, emphasizing the complex dynamics between climate inputs, topographic constraints and glacier response in calving glacier systems.

Variation in the prevalence of chronic bronchitis among smokers: a cross-sectional study.

PubMed

Mahesh, P A; Jayaraj, B S; Chaya, S K; Lokesh, K S; McKay, A J; Prabhakar, A K; Pape, U J

2014-07-01

Given the wide variations in prevalence of chronic obstructive pulmonary disease observed between populations with similar levels of exposure to tobacco smoke, we aimed to investigate the possibility of variations in prevalence of chronic bronchitis (CB) between two geographically distinct smoking populations in rural Karnataka, India. The Burden of Obstructive Lung Disease (BOLD) questionnaire was administered to all men aged >30 years in a cross-sectional survey. The χ(2) and Fisher's exact tests were used to compare CB prevalence in the two populations. Logistic regression was used to analyse the impact of multiple variables on the occurrence of CB. Two samples of 2322 and 2182 subjects were included in the study. In non-smokers, CB prevalence did not differ between the populations. However, it was significantly different between smoking populations (44.79% vs. 2.13%, P < 0.0001). Logistic regression indicated that, in addition to smoking, region, age, occupational dust exposure and type of house were associated with higher likelihood of CB. An interaction between smoking and area of residence was found (P < 0.001) and appeared to explain the effect of region (without interaction). A significant difference in CB prevalence was observed between male populations from two areas of Karnataka state, including when stratified by smoking status. No significant difference was observed between non-smokers.

Large scale mass redistribution and surface displacement from GRACE and SLR

NASA Astrophysics Data System (ADS)

Cheng, M.; Ries, J. C.; Tapley, B. D.

2012-12-01

Mass transport between the atmosphere, ocean and solid earth results in the temporal variations in the Earth gravity field and loading induced deformation of the Earth. Recent space-borne observations, such as GRACE mission, are providing extremely high precision temporal variations of gravity field. The results from 10-yr GRACE data has shown a significant annual variations of large scale vertical and horizontal displacements occurring over the Amazon, Himalayan region and South Asia, African, and Russian with a few mm amplitude. Improving understanding from monitoring and modeling of the large scale mass redistribution and the Earth's response are a critical for all studies in the geosciences, in particular for determination of Terrestrial Reference System (TRS), including geocenter motion. This paper will report results for the observed seasonal variations in the 3-dimentional surface displacements of SLR and GPS tracking stations and compare with the prediction from time series of GRACE monthly gravity solution.

Solar activity beyond the disk and variations of the cosmic ray gradient

NASA Technical Reports Server (NTRS)

Belov, A. V.; Dorman, L. I.; Eroshenko, E. A.; Ishkov, V. N.; Oleneva, V. A.

1985-01-01

Part of galactic cosmic rays (CR) observed near the Earth and on the Earth come from beyond-disk regions of circumsolar space. But CR of those energies which undergo substantial modulation cover too large a path across the lines of force of the interplanetary magnetic field (IMF) in order that they could provide an effective transfer of information about beyond-disk solar activity. And if it is still possible, the most probable channel for transferring such information must be a neutral layer of heliomagnetosphere in which the transverse CR transport is facilitated by their drift in an inhomogeneous magnetic field. A simple diffusion model for an expected CR variation in a neutral layer near the Earth is discussed. It is of importance that variations of the CR gradient are not at all always accompanied by considerable variations of IMF and solar wind velocity at the point of observation.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rasca, Anthony P.; Chen, James; Pevtsov, Alexei A., E-mail: anthony.rasca.ctr@nrl.navy.mil

Recent observations of the photosphere using high spatial and temporal resolution show small dynamic features at or below the current resolving limits. A new pixel dynamics method has been developed to analyze spectral profiles and quantify changes in line displacement, width, asymmetry, and peakedness of photospheric absorption lines. The algorithm evaluates variations of line profile properties in each pixel and determines the statistics of such fluctuations averaged over all pixels in a given region. The method has been used to derive statistical characteristics of pixel fluctuations in observed quiet-Sun regions, an active region with no eruption, and an active regionmore » with an ongoing eruption. Using Stokes I images from the Vector Spectromagnetograph (VSM) of the Synoptic Optical Long-term Investigations of the Sun (SOLIS) telescope on 2012 March 13, variations in line width and peakedness of Fe i 6301.5 Å are shown to have a distinct spatial and temporal relationship with an M7.9 X-ray flare in NOAA 11429. This relationship is observed as stationary and contiguous patches of pixels adjacent to a sunspot exhibiting intense flattening in the line profile and line-center displacement as the X-ray flare approaches peak intensity, which is not present in area scans of the non-eruptive active region. The analysis of pixel dynamics allows one to extract quantitative information on differences in plasma dynamics on sub-pixel scales in these photospheric regions. The analysis can be extended to include the Stokes parameters and study signatures of vector components of magnetic fields and coupled plasma properties.« less

Observations of Upward Propagating Waves in the Transition Region and Corona above Sunspots

NASA Astrophysics Data System (ADS)

Hou, Zhenyong; Huang, Zhenghua; Xia, Lidong; Li, Bo; Fu, Hui

2018-03-01

We present observations of persistent oscillations of some bright features in the upper-chromosphere/transition region above sunspots taken by IRIS SJ 1400 Å and upward propagating quasi-periodic disturbances along coronal loops rooted in the same region taken by the AIA 171 Å passband. The oscillations of the features are cyclic oscillatory motions without any obvious damping. The amplitudes of the spatial displacements of the oscillations are about 1″. The apparent velocities of the oscillations are comparable to the sound speed in the chromosphere, but the upward motions are slightly larger than that of the downward. The intensity variations can take 24%–53% of the background, suggesting nonlinearity of the oscillations. The FFT power spectra of the oscillations show a dominant peak at a period of about 3 minutes, which is consistent with the omnipresent 3 minute oscillations in sunspots. The amplitudes of the intensity variations of the upward propagating coronal disturbances are 10%–15% of the background. The coronal disturbances have a period of about 3 minutes, and propagate upward along the coronal loops with apparent velocities in a range of 30 ∼ 80 km s‑1. We propose a scenario in which the observed transition region oscillations are powered continuously by upward propagating shocks, and the upward propagating coronal disturbances can be the recurrent plasma flows driven by shocks or responses of degenerated shocks that become slow magnetic-acoustic waves after heating the plasma in the coronal loops at their transition-region bases.

Climate variation explains a third of global crop yield variability

PubMed Central

Ray, Deepak K.; Gerber, James S.; MacDonald, Graham K.; West, Paul C.

2015-01-01

Many studies have examined the role of mean climate change in agriculture, but an understanding of the influence of inter-annual climate variations on crop yields in different regions remains elusive. We use detailed crop statistics time series for ~13,500 political units to examine how recent climate variability led to variations in maize, rice, wheat and soybean crop yields worldwide. While some areas show no significant influence of climate variability, in substantial areas of the global breadbaskets, >60% of the yield variability can be explained by climate variability. Globally, climate variability accounts for roughly a third (~32–39%) of the observed yield variability. Our study uniquely illustrates spatial patterns in the relationship between climate variability and crop yield variability, highlighting where variations in temperature, precipitation or their interaction explain yield variability. We discuss key drivers for the observed variations to target further research and policy interventions geared towards buffering future crop production from climate variability. PMID:25609225

Regional seroreactivity and vector-borne disease co-exposures in dogs in the United States from 2004-2010: utility of canine surveillance.

PubMed

Yancey, Caroline B; Hegarty, Barbara C; Qurollo, Barbara A; Levy, Michael G; Birkenheuer, Adam J; Weber, David J; Diniz, Pedro P V P; Breitschwerdt, Edward B

2014-10-01

Vector-borne disease (VBD) pathogens remain an emerging health concern for animals and humans throughout the world. Surveillance studies of ticks and humans have made substantial contributions to our knowledge of VBD epidemiology trends, but long-term VBD surveillance data of dogs in the United States is limited. This seroreactivity study assessed US temporal and regional trends and co-exposures to Anaplasma, Babesia, Bartonella, Borrelia burgdorferi, Dirofilaria immitis, Ehrlichia spp., and spotted fever group Rickettsia in dogs from 2004-2010. Dog serum samples (N=14,496) were submitted to the North Carolina State University, College of Veterinary Medicine, Vector Borne Disease Diagnostic Laboratory for vector-borne pathogens diagnostic testing using immunofluorescent antibody (IFA) and enzyme-linked immunosorbent assay (ELISA) assays. These convenience samples were retrospectively reviewed and analyzed. The largest proportion of samples originated from the South (47.6%), with the highest percent of seroreactive samples observed in the Midatlantic (43.4%), compared to other US regions. The overall seroreactivity of evaluated VBD antigens were Rickettsia rickettsia (10.4%), B. burgdorferi (5.2%), Ehrlichia spp. (4.3%), Bartonella henselae (3.8%), Anaplasma spp. (1.9%), Bartonella vinsonii subsp. berkhoffii (1.5%), Babesia canis (1.1%), and D. immitis (0.8%). Significant regional and annual seroreactivity variation was observed with B. burgdorferi, Ehrlichia, and Rickettsia exposures. Seasonal seroreactivity variation was evident with Rickettsia. Seroreactivity to more than one antigen was present in 16.5% of exposed dogs. Nationally, the most prevalent co-exposure was Rickettsia with Ehrlichia spp. (5.3%), and the highest odds of co-exposure was associated with Anaplasma spp. and B. burgdorferi (odds ratio=6.6; 95% confidence interval 5.0, 8.8). Notable annual and regional seroreactivity variation was observed with certain pathogens over 7 years of study, suggesting canine surveillance studies may have value in contributing to future VBD knowledge.

Surface flux and ocean heat transport convergence contributions to seasonal and interannual variations of ocean heat content

NASA Astrophysics Data System (ADS)

Roberts, C. D.; Palmer, M. D.; Allan, R. P.; Desbruyeres, D. G.; Hyder, P.; Liu, C.; Smith, D.

2017-01-01

We present an observation-based heat budget analysis for seasonal and interannual variations of ocean heat content (H) in the mixed layer (Hmld) and full-depth ocean (Htot). Surface heat flux and ocean heat content estimates are combined using a novel Kalman smoother-based method. Regional contributions from ocean heat transport convergences are inferred as a residual and the dominant drivers of Hmld and Htot are quantified for seasonal and interannual time scales. We find that non-Ekman ocean heat transport processes dominate Hmld variations in the equatorial oceans and regions of strong ocean currents and substantial eddy activity. In these locations, surface temperature anomalies generated by ocean dynamics result in turbulent flux anomalies that drive the overlying atmosphere. In addition, we find large regions of the Atlantic and Pacific oceans where heat transports combine with local air-sea fluxes to generate mixed layer temperature anomalies. In all locations, except regions of deep convection and water mass transformation, interannual variations in Htot are dominated by the internal rearrangement of heat by ocean dynamics rather than the loss or addition of heat at the surface. Our analysis suggests that, even in extratropical latitudes, initialization of ocean dynamical processes could be an important source of skill for interannual predictability of Hmld and Htot. Furthermore, we expect variations in Htot (and thus thermosteric sea level) to be more predictable than near surface temperature anomalies due to the increased importance of ocean heat transport processes for full-depth heat budgets.

Atmospheric hydrocarbon emissions and concentrations in the barnett shale natural gas production region.

PubMed

Zavala-Araiza, Daniel; Sullivan, David W; Allen, David T

2014-05-06

Hourly ambient hydrocarbon concentration data were collected, in the Barnett Shale Natural Gas Production Region, using automated gas chromatography (auto-GC), for the period from April 2010 to December 2011. Data for three sites were compared: a site in the geographical center of the natural gas production region (Eagle Mountain Lake (EML)); a rural/suburban site at the periphery of the production region (Flower Mound Shiloh), and an urban site (Hinton). The dominant hydrocarbon species observed in the Barnett Shale region were light alkanes. Analyses of daily, monthly, and hourly patterns showed little variation in relative composition. Observed concentrations were compared to concentrations predicted using a dispersion model (AERMOD) and a spatially resolved inventory of volatile organic compounds (VOC) emissions from natural gas production (Barnett Shale Special Emissions Inventory) prepared by the Texas Commission on Environmental Quality (TCEQ), and other emissions information. The predicted concentrations of VOC due to natural gas production were 0-40% lower than background corrected measurements, after accounting for potential under-estimation of certain emission categories. Hourly and daily variations in observed, background corrected concentrations were primarily explained by variability in meteorology, suggesting that episodic emission events had little impact on hourly averaged concentrations. Total emissions for VOC from natural gas production sources are estimated to be approximately 25,300 tons/yr, when accounting for potential under-estimation of certain emission categories. This region produced, in 2011, approximately 5 bcf/d of natural gas (100 Gg/d) for a VOC to natural gas production ratio (mass basis) of 0.0006.

Electric potential structures of auroral acceleration region border from multi-spacecraft Cluster data

NASA Astrophysics Data System (ADS)

Sadeghi, S.; Emami, M. R.

2018-04-01

This paper studies an auroral event using data from three spacecraft of the Cluster mission, one inside and two at the poleward edge of the bottom of the Auroral Acceleration Region (AAR). The study reveals the three-dimensional profile of the region's poleward boundary, showing spatial segmentation of the electric potential structures and their decay in time. It also depicts localized magnetic field variations and field-aligned currents that appear to have remained stable for at least 80 s. Such observations became possible due to the fortuitous motion of the three spacecraft nearly parallel to each other and tangential to the AAR edge, so that the differences and variations can be seen when the spacecraft enter and exit the segmentations, hence revealing their position with respect to the AAR.

Rainfall Climatology over Asir Region, Saudi Arabia

NASA Astrophysics Data System (ADS)

Sharif, H.; Furl, C.; Al-Zahrani, M.

2012-04-01

Arid and semi-arid lands occupy about one-third of the land surface of the earth and support about one-fifth of the world population. The Asir area in Saudi Arabia is an example of these areas faced with the problem of maintaining sustainable water resources. This problem is exacerbated by the high levels of population growth, land use changes, increasing water demand, and climate variability. In this study, the characteristics of decade-scale variations in precipitation are examined in more detail for Asir region. The spatio-temporal distributions of rainfall over the region are analyzed. The objectives are to identify the sensitivity, magnitude, and range of changes in annual and seasonal evapotranspiration resulting from observed decade-scale precipitation variations. An additional objective is to characterize orographic controls on the space-time variability of rainfall. The rainfall data is obtained from more than 30 rain gauges spread over the region.

Overview of Chinese GRAPES Data Assimilation System

NASA Astrophysics Data System (ADS)

Liu, Yan

2017-04-01

The development of data assimilation system of Global and Regional Assimilation and Prediction System (GRAPES in short) which is Chinese new generation operational numerical weather prediction system completed in recent years is reviewed in this paper, including the design scheme and main characteristics. GRAPES adopts the variational approach with stresses at application of various remote sensing observational data. Its development path is from three dimensional to four dimensional assimilation. It may be implemented with limited area or global configurations. The three dimensional variational data assimilation systems have been operational in the national and a few of regional meteorological centers. The global four dimensional assimilation system is in pre-operational experiments, and will be upgraded. After a brief introduction to the GRAPES data assimilation system, results of a series of validations of GRAPES analyses against the observation data and analyses derived from other operational NWP center to assess its performance are presented.

Variation of D-region nitric-oxide density with solar activity and season at the dip equator

NASA Technical Reports Server (NTRS)

Chakrabarty, D. K.; Pakhomov, S. V.; Beig, G.

1989-01-01

To study the solar control on electron density (N sub e) in the equatorial D region, a program was initiated with Soviet collaboration in 1979. A total of 31 rockets were launched during the high solar activity period, and 47 rockets during the low solar activity period, from Thumba to measure the N sub e profiles. Analysis of the data shows that the average values of N sub e for the high solar activity period are higher by a factor of about 2 to 3 compared to the low solar activity values. It was found that a single nitric oxide density, (NO), profile cannot reproduce all the observed N sub e profiles. An attempt was made to reproduce theoretically the observed N sub e profiles by introducing variation in (NO) for the different solar activity periods and seasons.

Observed variations in U.S. frost timing linked to atmospheric circulation patterns

NASA Astrophysics Data System (ADS)

Strong, Courtenay; McCabe, Gregory J.

2017-05-01

Several studies document lengthening of the frost-free season within the conterminous United States (U.S.) over the past century, and report trends in spring and fall frost timing that could stem from hemispheric warming. In the absence of warming, theory and case studies link anomalous frost timing to atmospheric circulation anomalies. However, recent efforts to relate a century of observed changes in U.S. frost timing to various atmospheric circulations yielded only modest correlations, leaving the relative importance of circulation and warming unclear. Here, we objectively partition the U.S. into four regions and uncover atmospheric circulations that account for 25-48% of spring and fall-frost timing. These circulations appear responsive to historical warming, and they consistently account for more frost timing variability than hemispheric or regional temperature indices. Reliable projections of future variations in growing season length depend on the fidelity of these circulation patterns in global climate models.

Observed variations in U.S. frost timing linked to atmospheric circulation patterns

USGS Publications Warehouse

Strong, Courtenay; McCabe, Gregory J.

2017-01-01

Several studies document lengthening of the frost-free season within the conterminous United States (U.S.) over the past century, and report trends in spring and fall frost timing that could stem from hemispheric warming. In the absence of warming, theory and case studies link anomalous frost timing to atmospheric circulation anomalies. However, recent efforts to relate a century of observed changes in U.S. frost timing to various atmospheric circulations yielded only modest correlations, leaving the relative importance of circulation and warming unclear. Here, we objectively partition the U.S. into four regions and uncover atmospheric circulations that account for 25–48% of spring and fall-frost timing. These circulations appear responsive to historical warming, and they consistently account for more frost timing variability than hemispheric or regional temperature indices. Reliable projections of future variations in growing season length depend on the fidelity of these circulation patterns in global climate models.

Observed variations in U.S. frost timing linked to atmospheric circulation patterns.

PubMed

Strong, Courtenay; McCabe, Gregory J

2017-05-23

Several studies document lengthening of the frost-free season within the conterminous United States (U.S.) over the past century, and report trends in spring and fall frost timing that could stem from hemispheric warming. In the absence of warming, theory and case studies link anomalous frost timing to atmospheric circulation anomalies. However, recent efforts to relate a century of observed changes in U.S. frost timing to various atmospheric circulations yielded only modest correlations, leaving the relative importance of circulation and warming unclear. Here, we objectively partition the U.S. into four regions and uncover atmospheric circulations that account for 25-48% of spring and fall-frost timing. These circulations appear responsive to historical warming, and they consistently account for more frost timing variability than hemispheric or regional temperature indices. Reliable projections of future variations in growing season length depend on the fidelity of these circulation patterns in global climate models.

Depth and temperature of permafrost on the Alaskan Arctic Slope; preliminary results

USGS Publications Warehouse

Lachenbruch, Arthur H.; Sass, J.H.; Lawver, L.A.; Brewer, M.C.; Moses, T.H.

1982-01-01

As permafrost is defined by its temperature, the only way to determine its depth is to monitor the return to equilibrium of temperatures in boreholes that penetrate permafrost. Such measurements are under way in 25 wells on the Alaskan Arctic Slope; 21 are in Naval Petroleum Reserve Alaska (NPRA), and 4 are in the foothills to the east. Near-equilibrium results indicate that permafrost thickness in NPRA generally ranges between 200 and 400 m (compared to 600+ m at Prudhoe Bay); there are large local variations and no conspicuous regional trends. By contrast the long-term mean temperature of the ground surface (one factor determining permafrost depth) varies systematically from north to south in a pattern modified by the regional topography. The observed variation in permafrost temperature and depth cannot result primarily from effects of surface bodies of water or regional variations in heat flow; they are consistent, however, with expectable variations in the thermal conductivity of the sediments. It remains to be determined (with conductivity measurements) whether certain sites with anomalously high local gradients have anomalously high heat flow; if they do, they might indicate upwelling of interstitial fluids in the underlying basin sediments.

Influence of synoptic condition and holiday effects on VOCs and ozone production in the Yangtze River Delta region, China

NASA Astrophysics Data System (ADS)

Xu, Zhengning; Huang, Xin; Nie, Wei; Chi, Xuguang; Xu, Zheng; Zheng, Longfei; Sun, Peng; Ding, Aijun

2017-11-01

Both anthropogenic emission and synoptic conditions play important roles in ozone (O3) formation and accumulation. In order to understand the influence of synoptic condition and holiday effects on ozone production in the Yangtze River Delta region, China, concentrations of speciated volatile organic compounds (VOCs) and O3 as well as other relevant trace gases were simultaneously measured at the Station for Observing Regional Processes of the Earth System (SORPES) in Nanjing around the National Day holidays of China in 2014, which featured substantial change of emissions and dominated by typical anti-cyclones. Different groups of VOC species and their chemical reactivities were comprehensively analyzed. We observed clear diurnal variations of short alkenes during the measurement period, considerable amount of short alkenes were observed during night (more than 10 ppb) while almost no alkenes were measured during daytime, which might be attributed to different chemical processes. The obvious enhancement of the VOC tracers during the National Day holidays (Oct. 1st-Oct. 7th) indicated that the holiday effect strongly influenced the distribution of VOC profile and chemical reactivity in the atmosphere. At the same time, two meso-scale anticyclone processes were also observed during the measurement period. The synoptic condition contributed to the accumulation of VOCs and other precursors, which consequently impacted the ozone production in this region. The integrated influence of synoptic and holiday effects was also analyzed with an Observation Based Model (OBM) based on simplified MCM (Master Chemical Mechanism) chemical mechanism. The calculated relative increment reactivity (RIR) of different VOC groups revealed that during the holidays, this region was in VOC-limited regime and the variation of RIR shows a close linkage to the development and elimination of anti-cyclones, indicating an in-negligible contribution of synoptic effect toward ozone production in this region.

A mechanism of midlatitude noontime foE long-term variations inferred from European observations

NASA Astrophysics Data System (ADS)

Mikhailov, A. V.; Perrone, L.; Nusinov, A. A.

2017-04-01

Manually scaled June noontime monthly median foE values at three European stations Rome, Juliusruh, and Slough/Chilton were used to understand the mechanism of foE long-term variations. The 11 year running mean smoothed foE manifests long-term (for some solar cycles) variations with the rising phase at the end of 1960-1985 and the falling phase after 1985. A close relationship (even in details) between (foEave)11y and (R12)11y variations with the correlation coefficient of 0.996 (absolutely significant according to Fisher F criterion) suggests that the Sun is the source of these (foEave)11y long-term variations. After removing solar activity long-term variations the residual (foEave)11y trend is very small ( 0.029% per decade) being absolutely insignificant. This means that all (foEave)11y variations are removed with one solar activity index, (R12)11y, i.e., this means that long-term variations are fully controlled by solar activity. Theory of midlatitude daytime E region tells us that long-term variations of solar EUV in two lines λ = 977 Å (CIII) and λ = 1025.7 Å (HLyβ) and X-ray radiation with λ < 100 Å (both manifesting the same long-term variations with the rising phase at the end of 1960-1985 and the falling phase after 1985) are responsible for the observed (foEave)11y variations. Therefore, the observed daytime midlatitude foE long-term variations have a natural (not anthropogenic) origin related to long-term variations of solar activity. No peculiarities in relation with the last deep solar minimum in 2008-2009 have been revealed.

Statistical study of interplanetary condition effect on geomagnetic storms: 2. Variations of parameters

NASA Astrophysics Data System (ADS)

Yermolaev, Yu. I.; Lodkina, I. G.; Nikolaeva, N. S.; Yermolaev, M. Yu.

2011-02-01

We investigate the behavior of mean values of the solar wind’s and interplanetary magnetic field’s (IMF) parameters and their absolute and relative variations during the magnetic storms generated by various types of the solar wind. In this paper, which is a continuation of paper [1], we, on the basis of the OMNI data archive for the period of 1976-2000, have analyzed 798 geomagnetic storms with D st ≤ -50 nT and their interplanetary sources: corotating interaction regions CIR, compression regions Sheath before the interplanetary CMEs; magnetic clouds MC; “Pistons” Ejecta, and an uncertain type of a source. For the analysis the double superposed epoch analysis method was used, in which the instants of the magnetic storm onset and the minimum of the D st index were taken as reference times. It is shown that the set of interplanetary sources of magnetic storms can be sub-divided into two basic groups according to their slowly and fast varying characteristics: (1) ICME (MC and Ejecta) and (2) CIR and Sheath. The mean values, the absolute and relative variations in MC and Ejecta for all parameters appeared to be either mean or lower than the mean value (the mean values of the electric field E y and of the B z component of IMF are higher in absolute value), while in CIR and Sheath they are higher than the mean value. High values of the relative density variation sN/< N> are observed in MC. At the same time, the high values for relative variations of the velocity, B z component, and IMF magnitude are observed in Sheath and CIR. No noticeable distinctions in the relationships between considered parameters for moderate and strong magnetic storms were observed.

Variation of the North Equatorial Current, Mindanao Current, and Kuroshio Current in a high-resolution data assimilation during 2008-2012

NASA Astrophysics Data System (ADS)

Zhai, Fangguo; Wang, Qingye; Wang, Fujun; Hu, Dunxin

2014-11-01

Outputs from a high-resolution data assimilation system, the global Hybrid Coordinate Ocean Model and Navy Coupled Ocean Data Assimilation (HYCOM+NCODA) 1/12° analysis, were analyzed for the period September 2008 to February 2012. The objectives were to evaluate the performance of the system in simulating ocean circulation in the tropical northwestern Pacific and to examine the seasonal to interannual variations of the western boundary currents. The HYCOM assimilation compares well with altimetry observations and mooring current measurements. The mean structures and standard deviations of velocities of the North Equatorial Current (NEC), Mindanao Current (MC) and Kuroshio Current (KC) also compare well with previous observations. Seasonal to interannual variations of the NEC transport volume are closely correlated with the MC transport volume, instead of that of the KC. The NEC and MC transport volumes mainly show well-defined annual cycles, with their maxima in spring and minima in fall, and are closely related to the circulation changes in the Mindanao Dome (MD) region. In seasons of transport maxima, the MD region experiences negative SSH anomalies and a cyclonic gyre anomaly, and in seasons of transport minima the situation is reversed. The sea surface NEC bifurcation latitude (NBL) in the HYCOM assimilation also agrees well with altimetry observations. In 2009, the NBL shows an annual cycle similar to previous studies, reaching its southernmost position in summer and its northernmost position in winter. In 2010 and 2011, the NBL variations are dominantly influenced by La Niña events. The dynamics responsible for the seasonal to interannual variations of the NEC-MC-KC current system are also discussed.

Evidence for magnetic energy storage in coronal active regions

NASA Technical Reports Server (NTRS)

Krieger, A. S.; De Feiter, L. D.; Vaiana, G. S.

1976-01-01

Examination of X-ray images obtained by the S-054 X-ray spectrographic telescope on Skylab shows the presence of some atypical X-ray-emitting coronal structures in active regions which are not consistent with potential extrapolations of photospheric magnetic fields. Analysis of the observed temporal changes in the X-ray-emitting active-region structures demonstrates that the majority of these consist of brightness changes representing temperature (and perhaps density) variations of the material in the loops.

High-Amplitude, Rapid Photometric Variation of the New Polar Master OT J132104.0+560957.8

DTIC Science & Technology

2015-02-05

channel the captured material onto cyclotron -emitting accretion regions near the WD’s magnetic poles. Because cyclotron emission is heavily beamed, it...of the cyclotron -emitting region can produce dramatic pho- tometric variability modulated at the WD’s spin period (e.g., Gänsicke et al. 2001). A...observations of J1321 could detect the polarized cyclotron emission from the accretion region, conclusively verifying this classification. Figure 1. The

Quantitative-phase microscopy of nanosecond laser-induced micro-modifications inside silicon.

PubMed

Li, Q; Chambonneau, M; Chanal, M; Grojo, D

2016-11-20

Laser-induced permanent modification inside silicon has been recently demonstrated by using tightly focused nanosecond sources at a 1550 nm wavelength. We have developed a quantitative-phase microscope operating in the near-infrared domain to characterize the laser-induced modifications deep into silicon. By varying the number of applied laser pulses and the energy, we observe porous and densified regions in the focal region. The observed changes are associated with refractive index variations |Δn| exceeding 10^-3, enough to envision the laser writing of optical functionalities inside silicon.

Analysis of the temporal-spatial distribution of ionosphere scale height based on COSMIC occultation data

NASA Astrophysics Data System (ADS)

Ma, Xin-Xin; Lin, Zhan; Jin, Hong-Lin; Chen, Hua-Ran; Jiao, Li-Guo

2017-11-01

In this study, the distribution characteristics of scale height at various solar activity levels were statistically analyzed using the Constellation Observing System for Meteorology, Ionosphere, and Climate (COSMIC) radio occultation data for 2007-2013. The results show that: (1) in the mid-high latitude region, the daytime (06-17LT) scale height exhibits annual variations in the form of a single peak structure with the crest appearing in summer. At the high latitude region, an annual variation is also observed for nighttime (18-05LT) scale height; (2) changes in the spatial distribution of the scale height occur. The crests are deflected towards the north during daytime (12-14LT) at a geomagnetic longitude of 60°W-180°W, and they are distributed roughly along the geomagnetic equator at 60°W-180°E. In the approximate region of 120°W-150°E and 50°S-80°S, the scale height values are significantly higher than those in other mid-latitude areas. This region enlarges with increased solar activity, and shows an approximately symmetric distribution about 0° geomagnetic longitude. Nighttime (00-02LT) scale height values in the high-latitude region are larger than those in the low-mid latitude region. These results could serve as reference for the study of ionosphere distribution and construction of the corresponding profile model.

Spatiotemporal variations in the difference between satellite-observed daily maximum land surface temperature and station-based daily maximum near-surface air temperature

NASA Astrophysics Data System (ADS)

Lian, Xu; Zeng, Zhenzhong; Yao, Yitong; Peng, Shushi; Wang, Kaicun; Piao, Shilong

2017-02-01

There is an increasing demand to integrate land surface temperature (LST) into climate research due to its global coverage, which requires a comprehensive knowledge of its distinctive characteristics compared to near-surface air temperature (Tair). Using satellite observations and in situ station-based data sets, we conducted a global-scale assessment of the spatial and seasonal variations in the difference between daily maximum LST and daily maximum Tair (δT, LST - Tair) during 2003-2014. Spatially, LST is generally higher than Tair over arid and sparsely vegetated regions in the middle-low latitudes, but LST is lower than Tair in tropical rainforests due to strong evaporative cooling, and in the high-latitude regions due to snow-induced radiative cooling. Seasonally, δT is negative in tropical regions throughout the year, while it displays a pronounced seasonality in both the midlatitudes and boreal regions. The seasonality in the midlatitudes is a result of the asynchronous responses of LST and Tair to the seasonal cycle of radiation and vegetation abundance, whereas in the boreal regions, seasonality is mainly caused by the change in snow cover. Our study identified substantial spatial heterogeneity and seasonality in δT, as well as its determinant environmental drivers, and thus provides a useful reference for monitoring near-surface air temperature changes using remote sensing, particularly in remote regions.

Genome-wide association study identifies SNPs in the MHC class II loci that are associated with self-reported history of whooping cough.

PubMed

McMahon, George; Ring, Susan M; Davey-Smith, George; Timpson, Nicholas J

2015-10-15

Whooping cough is currently seeing resurgence in countries despite high vaccine coverage. There is considerable variation in subject-specific response to infection and vaccine efficacy, but little is known about the role of human genetics. We carried out a case-control genome-wide association study of adult or parent-reported history of whooping cough in two cohorts from the UK: the ALSPAC cohort and the 1958 British Birth Cohort (815/758 cases and 6341/4308 controls, respectively). We also imputed HLA alleles using dense SNP data in the MHC region and carried out gene-based and gene-set tests of association and estimated the amount of additive genetic variation explained by common SNPs. We observed a novel association at SNPs in the MHC class II region in both cohorts [lead SNP rs9271768 after meta-analysis, odds ratio [95% confidence intervals (CIs)] 1.47 (1.35, 1.6), P-value 1.21E - 18]. Multiple strong associations were also observed at alleles at the HLA class II loci. The majority of these associations were explained by the lead SNP rs9271768. Gene-based and gene-set tests and estimates of explainable common genetic variation could not establish the presence of additional associations in our sample. Genetic variation at the MHC class II region plays a role in susceptibility to whooping cough. These findings provide additional perspective on mechanisms of whooping cough infection and vaccine efficacy. © The Author 2015. Published by Oxford University Press.

[Analysis of acid rain characteristics of Lin'an Regional Background Station using long-term observation data].

PubMed

Li, Zheng-Quan; Ma, Hao; Mao, Yu-Ding; Feng, Tao

2014-02-01

Using long-term observation data of acid rain at Lin'an Regional Background Station (Lin'an RBS), this paper studied the interannual and monthly variations of acid rain, the reasons for the variations, and the relationships between acid rain and meteorological factors. The results showed that interannual variation of acid rain at Lin'an RBS had a general increasing trend in which there were two obvious intensifying processes and two distinct weakening processes, during the period ranging from 1985 to 2012. In last two decades, the monthly variation of acid rain at Lin'an RBS indicated that rain acidity and frequency of severe acid rain were increasing but the frequency of weak acid rain was decreasing when moving towards bilateral side months of July. Acid rain occurrence was affected by rainfall intensity, wind speed and wind direction. High frequency of severe acid rain and low frequency of weak acid rain were on days with drizzle, but high frequency of weak acid rain and low frequency of severe acid rain occurred on rainstorm days. With wind speed upgrading, the frequency of acid rain and the proportion of severe acid rain were declining, the pH value of precipitation was reducing too. Another character is that daily dominant wind direction of weak acid rain majorly converged in S-W section ,however that of severe acid rain was more likely distributed in N-E section. The monthly variation of acid rain at Lin'an RBS was mainly attributed to precipitation variation, the increasing and decreasing of monthly incoming wind from SSE-WSW and NWN-ENE sections of wind direction. The interannual variation of acid rain could be due to the effects of energy consumption raising and significant green policies conducted in Zhejiang, Jiangsu and Shanghai.

Area-level variations in cancer care and outcomes.

PubMed

Keating, Nancy L; Landrum, Mary Beth; Lamont, Elizabeth B; Bozeman, Samuel R; McNeil, Barbara J

2012-05-01

: Substantial regional variations in health-care spending exist across the United States; yet, care and outcomes are not better in higher-spending areas. Most studies have focused on care in fee-for-service Medicare; whether spillover effects exist in settings without financial incentives for more care is unknown. : We studied care for cancer patients in fee-for-service Medicare and the Veterans Health Administration (VA) to understand whether processes and outcomes of care vary with area-level Medicare spending. : An observational study using logistic regression to assess care by area-level measures of Medicare spending. : Patients with lung, colorectal, or prostate cancers diagnosed during 2001-2004 in Surveillance, Epidemiology, and End Results (SEER) areas or the VA. The SEER cohort included fee-for-service Medicare patients aged older than 65 years. : Recommended and preference-sensitive cancer care and mortality. : In fee-for-service Medicare, higher-spending areas had higher rates of recommended care (curative surgery and adjuvant chemotherapy for early-stage non-small-cell lung cancer and chemotherapy for stage III colon cancer) and preference-sensitive care (chemotherapy for stage IV lung and colon cancer and primary treatment of local/regional prostate cancer) and had lower lung cancer mortality. In the VA, we observed minimal variation in care by area-level Medicare spending. : Our findings suggest that intensity of care for Medicare beneficiaries is not driving variations in VA care, despite some overlap in physician networks. Although the Dartmouth Atlas work has been of unprecedented importance in demonstrating variations in Medicare spending, new measures may be needed to better understand variations in other populations.

Characteristics of surface ozone and nitrogen oxides at urban, suburban and rural sites in Ningbo, China

NASA Astrophysics Data System (ADS)

Tong, Lei; Zhang, Huiling; Yu, Jie; He, Mengmeng; Xu, Nengbin; Zhang, Jingjing; Qian, Feizhong; Feng, Jiayong; Xiao, Hang

2017-05-01

Surface ozone (O3) is a harmful air pollutant that has attracted growing concern in China. In this study, the mixing ratios of O3 and nitrogen oxides (NOx) at three different sites (urban, suburban and rural) of Ningbo were continuously measured to investigate the spatiotemporal characteristics of O3 and its relationships with environmental variables. The diurnal O3 variations were characterized by afternoon maxima (38.7-53.1 ppb on annual average) and early morning minima (11.7-26.2 ppb) at all the three sites. Two seasonal peaks of O3 were observed in spring (April or May) and autumn (October) with minima being observed in winter (December). NOx levels showed generally opposite variations to that of O3 with diurnal and seasonal maxima occurring in morning/evening rush-hours and in winter, respectively. As to the inter-annual variations of air pollutants, generally decreasing and increasing trends were observed in NO and O3 levels, respectively, from 2012 to 2015 at both urban and suburban sites. O3 levels were positively correlated with temperature but negatively correlated with relative humidity and NOx levels. Significant differences in O3 levels were observed for different wind speeds and wind directions (p < 0.001). O3 levels varied non-linearly with wind speed ranges with an increasing trend within 4 m/s. Higher mixing ratio of O3 was observed for wind blowing from the sea, which indicates that the coastal air mass might carry more O3. A decreasing trend in O3 levels was observed from weekdays to weekends at all the three sites. As to the spatial variation, higher levels of O3 were observed at the suburban and rural sites where less O3 was depleted by NO titration. In contrast, the urban site exhibited lower O3 but higher NOx levels due to the influence of traffic emissions. Larger amplitudes of diurnal and monthly O3 variations were observed at the suburban site than those at the urban and rural sites. In general, the O3 levels at the non-urban sites were more affected by the background transport, while both the local and regional contributions played roles in urban O3 variations. The annual average O3 mixing ratios (22.7-37.7 ppb) in Ningbo were generally similar to those of other regions around the world. However, the recommended air quality standards for O3 were often exceeded during warm seasons, which could be a potential threat to both local population and plant growth.

Quantitative Clinical Imaging Methods for Monitoring Intratumoral Evolution.

PubMed

Kim, Joo Yeun; Gatenby, Robert A

2017-01-01

Solid tumors are multiscale, open, complex, dynamic systems: complex because they have many interacting components, dynamic because both the components and their interactions can change with time, and open because the tumor freely communicates with surrounding and even distant host tissue. Thus, it is not surprising that striking intratumoral variations are commonly observed in clinical imaging such as MRI and CT and that several recent studies found striking regional variations in the molecular properties of cancer cells from the same tumor. Interestingly, this spatial heterogeneity in molecular properties of tumor cells is typically ascribed to branching clonal evolution due to accumulating mutations while macroscopic variations observed in, for example, clinical MRI scans are usually viewed as functions of blood flow. The clinical significance of spatial heterogeneity has not been fully determined but there is a general consensus that the varying intratumoral landscape along with patient factors such as age, morbidity and lifestyle, contributes significantly to the often unpredictable response of individual patients within a disease cohort treated with the same standard-of-care therapy.Here we investigate the potential link between macroscopic tumor heterogeneity observed by clinical imaging and spatial variations in the observed molecular properties of cancer cells. We build on techniques developed in landscape ecology to link regional variations in the distribution of species with local environmental conditions that define their habitat. That is, we view each region of the tumor as a local ecosystem consisting of environmental conditions such as access to nutrients, oxygen, and means of waste clearance related to blood flow and the local population of tumor cells that both adapt to these conditions and, to some extent, change them through, for example, production of angiogenic factors. Furthermore, interactions among neighboring habitats can produce broader regional dynamics so that the internal diversity of tumors is the net result of complex multiscale somatic Darwinian interactions.Methods in landscape ecology harness Darwinian dynamics to link the environmental properties of a given region to the local populations which are assumed to represent maximally fit phenotypes within those conditions. Consider a common task of a landscape ecologist: defining the spatial distribution of species in a large region, e.g., in a satellite image. Clearly the most accurate approach requires a meter by meter survey of the multiple square kilometers in the region of interest. However, this is both impractical and potentially destructive. Instead, landscape ecology breaks the task into component parts relying on the Darwinian interdependence of environmental properties and fitness of specific species' phenotypic and genotypic properties. First, the satellite map is carefully analyzed to define the number and distribution of habitats. Then the species distribution in a representative sampling of each habitat is empirically determined. Ultimately, this permits sufficient bridging of spatial scales to accurately predict spatial distribution of plant and animal species within large regions.Currently, identifying intratumoral subpopulations requires detailed histological and molecular studies that are expensive and time consuming. Furthermore, this method is subject to sampling bias, is invasive for vital organs such as the brain, and inherently destructive precluding repeated assessments for monitoring post-treatment response and proteogenomic evolution. In contrast, modern cross-sectional imaging can interrogate the entire tumor noninvasively, allowing repeated analysis without disrupting the region of interest. In particular, magnetic resonance imaging (MRI) provides exceptional spatial resolution and generates signals that are unique to the molecular constituents of tissue. Here we propose that MRI scans may be the equivalent of satellite images in landscape ecology and, with appropriate application of Darwinian first principles and sophisticated image analytic methods, can be used to estimate regional variations in the molecular properties of cancer cells.We have initially examined this technique in glioblastoma, a malignant brain neoplasm which is morphologically complex and notorious for a fast progression from diagnosis to recurrence and death, making a suitable subject of noninvasive, rapidly repeated assessment of intratumoral evolution. Quantitative imaging analysis of routine clinical MRIs from glioblastoma has identified macroscopic morphologic characteristics which correlate with proteogenomics and prognosis. The key to the accurate detection and forecasting of intratumoral evolution using quantitative imaging analysis is likely to be in the understanding of the synergistic interactions between observable intratumoral subregions and the resulting tumor behavior.

Regional to Global Biogenic Isoprene Emission Responses to Changes in Vegetation From 2000 to 2015

NASA Astrophysics Data System (ADS)

Chen, W. H.; Guenther, A. B.; Wang, X. M.; Chen, Y. H.; Gu, D. S.; Chang, M.; Zhou, S. Z.; Wu, L. L.; Zhang, Y. Q.

2018-04-01

Isoprene, a dominant biogenic volatile organic compound that is mainly emitted by trees, has a significant impact on the atmospheric chemistry. Regional to global changes in biogenic isoprene emission associated with vegetation variations between 2000 and 2015 were estimated using the MEGAN model with satellite land cover data for inputs in this study. The satellite data estimates of land cover changes were compared to results from previous investigators that have either conducted regional studies or have used lower resolution land cover data. The analysis indicates that tree coverage increases of >5% occurred in 13% of locations including in central China and Europe. In contrast, a decrease of >5% was observed in about 5% of locations, especially in tropical regions. The trends in global tree coverage from 2000 to 2015 resulted in a global isoprene emission decrease of only 1.5%, but there were significant regional variations. Obvious decreases in tree coverage in some tropical areas (e.g., Amazon Basin, Western Africa, Southeast Asia) resulted in a 10% reduction of regional isoprene emission due to agricultural expansion. Distinct increments of isoprene emission (5-10%) were mainly found in Northeast China and India and were associated with afforestation efforts. Deforestation and afforestation associated with managed plantations does not only affect the total forest coverage but also impacts average isoprene emission capacity, which can result in accelerated isoprene emission variations. Consequently, isoprene variation assessments are needed that not only account for changes in vegetation fractions but also consider the changes in plant species compositions of forests and other landscapes.

A ferroelectric model for the low emissivity highlands on Venus

NASA Technical Reports Server (NTRS)

Shepard, Michael K.; Arvidson, Raymond E.; Brackett, Robert A.; Fegley, Bruce, Jr.

1994-01-01

A model to explain the low emissivity venusian highlands is proposed utilizing the temperature-dependent dielectric constant of ferroelectric minerals. Ferroelectric minerals are known to occur in alkaline and carbonite rocks, both of which are plausible for Venus. Ferroelectric minerals possess extremely high dielectric constants (10(exp 5)) over small temperature intervals and are only required in minor (much less than 1%) abundances to explain the observed emissivities. The ferroelectric model can account for: (1) the observed reduction in emissivity with increased altitude, (2) the abrupt return to normal emissivities at highest elevations, and (3) the variations in the critical elevation observed from region to region.

Diurnal, monthly and seasonal variation of mean winds in the MLT region observed over Kolhapur using MF radar

NASA Astrophysics Data System (ADS)

Sharma, A. K.; Gaikwad, H. P.; Ratnam, M. Venkat; Gurav, O. B.; Ramanjaneyulu, L.; Chavan, G. A.; Sathishkumar, S.

2018-04-01

Medium Frequency (MF) radar located at Kolhapur (16.8°N, 74.2°E) has been upgraded in August 2013. Since then continuous measurements of zonal and meridional winds are obtained covering larger altitudes from the Mesosphere and Lower Thermosphere (MLT) region. Diurnal, monthly and seasonal variation of these mean winds is presented in this study using four years (2013-2017) of observations. The percentage occurrence of radar echoes show maximum between 80 and 105 km. The mean meridional wind shows Annual Oscillation (AO) between 80 and 90 km altitudes with pole-ward motion during December solstice and equatorial motion during June solstice. Quasi-biennial oscillation (QBO) with weaker amplitudes are also observed between 90 and 104 km. Zonal winds show semi-annual oscillation (SAO) with westward winds during equinoxes and eastward winds during solstices between 80 and 90 km. AO with eastward winds during December solstice and westward wind in the June solstice is also observed in the mean zonal wind between 100 and 110 km. These results match well with that reported from other latitudes within Indian region between 80 and 90 km. However, above 90 km the results presented here provide true mean background winds for the first time over Indian low latitude region as the present station is away from equatorial electro-jet and are not contaminated by ionospheric processes. Further, the results presented earlier with an old version of this radar are found contaminated due to unknown reasons and are corrected in the present work. This upgraded MF radar together with other MLT radars in the Indian region forms unique network to investigate the vertical and lateral coupling.

Utilizing a suite of satellite missions to address poorly constrained hydrological fluxes

NASA Astrophysics Data System (ADS)

Singh, A.; Behrangi, A.; Fisher, J.; Reager, J. T., II; Gardner, A. S.

2017-12-01

The amount of water stored in a given region (total water storage) changes in response to changes in the hydrologic balance (inputs minus outputs). Closing this balance is exceedingly difficult due to the sparsity of field observation, large uncertainties in satellite derived estimates and model limitation. Different regions have distinct reliability on different hydrological parameters. For example, at a higher latitude precipitation is more uncertain than evapotranspiration (ET) while at lower/middle latitude the opposite is true. This study explores alternative estimates of regional hydrological fluxes by integrating the total water storage estimated by the GRACE gravity fields, and improved estimates lake storage variation by Landsat based land-water classification and satellite altimetry based water height measurements. In particular, an alternative ET estimate is generated for the Aral Sea region by integrating multi-sensor remote sensing data. In an endorheic lake like the Aral Sea, its volumetric variations are predominately governed by changes in inflow, evaporation from the water body and precipitation on the lake. The Aral Sea water volume is estimated at a monthly time step by the combination of Landsat land-water classification and ocean radar altimetry (Jason 1 and Jason 2) observations using truncated pyramid method. Considering gauge based river runoff as a true observation and given the fact that there is less variability between multiple precipitation datasets (TRMM, GPCP, GPCC, and ERA), ET can be considered as a most uncertain parameter in this region. The estimated lake volume acts as a controlling factor to estimate ET as the residual of the changes in TWS minus inflow plus precipitation. The estimated ET is compared with the MODIS-based evaporation observations.

Utilizing a suite of satellite missions to address poorly constrained hydrological fluxes

NASA Astrophysics Data System (ADS)

Shukla, S.; Hobbins, M.; McEvoy, D.; Husak, G. J.; Dewes, C.; McNally, A.; Huntington, J. L.; Funk, C. C.; Verdin, J. P.

2016-12-01

The amount of water stored in a given region (total water storage) changes in response to changes in the hydrologic balance (inputs minus outputs). Closing this balance is exceedingly difficult due to the sparsity of field observation, large uncertainties in satellite derived estimates and model limitation. Different regions have distinct reliability on different hydrological parameters. For example, at a higher latitude precipitation is more uncertain than evapotranspiration (ET) while at lower/middle latitude the opposite is true. This study explores alternative estimates of regional hydrological fluxes by integrating the total water storage estimated by the GRACE gravity fields, and improved estimates lake storage variation by Landsat based land-water classification and satellite altimetry based water height measurements. In particular, an alternative ET estimate is generated for the Aral Sea region by integrating multi-sensor remote sensing data. In an endorheic lake like the Aral Sea, its volumetric variations are predominately governed by changes in inflow, evaporation from the water body and precipitation on the lake. The Aral Sea water volume is estimated at a monthly time step by the combination of Landsat land-water classification and ocean radar altimetry (Jason 1 and Jason 2) observations using truncated pyramid method. Considering gauge based river runoff as a true observation and given the fact that there is less variability between multiple precipitation datasets (TRMM, GPCP, GPCC, and ERA), ET can be considered as a most uncertain parameter in this region. The estimated lake volume acts as a controlling factor to estimate ET as the residual of the changes in TWS minus inflow plus precipitation. The estimated ET is compared with the MODIS-based evaporation observations.

Variation of TEC and related parameters over the Indian EIA region from ground and space based GPS observations during the low solar activity period of May 2007-April 2008

NASA Astrophysics Data System (ADS)

Chakravarty, S. C.; Nagaraja, Kamsali; Jakowski, N.

2017-03-01

The annual variations of ionospheric Total Electron Content (TEC), F-region peak ionisation (NmF2) and the ionospheric slab thickness (τ) over the Indian region during the low solar activity period of May 2007-April 2008 have been studied. For this purpose the ground based TEC data obtained from GAGAN measurements and the space based data from GPS radio occultation technique using CHAMP have been utilised. The results of these independent measurements are combined to derive additional parameters such as the equivalent slab thickness of the total and the bottom-side ionospheric regions (τT and τB). The one year hourly average values of all these parameters over the ionospheric anomaly latitude region (10-26°N) are presented here along with the statistical error estimates. It is expected that these results are potentially suited to be used as base level values during geomagnetically quiet and undisturbed solar conditions.

Estimation of austral summer net community production in the Amundsen Sea: Self-organizing map analysis approach

NASA Astrophysics Data System (ADS)

Park, K.; Hahm, D.; Lee, D. G.; Rhee, T. S.; Kim, H. C.

2014-12-01

The Amundsen Sea, Antarctica, has been known for one of the most susceptible region to the current climate change such as sea ice melting and sea surface temperature change. In the Southern Ocean, a predominant amount of primary production is occurring in the continental shelf region. Phytoplankton blooms take place during the austral summer due to the limited sunlit and sea ice cover. Thus, quantifying the variation of summer season net community production (NCP) in the Amundsen Sea is essential to analyze the influence of climate change to the variation of biogeochemical cycle in the Southern Ocean. During the past three years of 2011, 2012 and 2014 in austral summer, we have conducted underway observations of ΔO2/Ar and derived NCP of the Amundsen Sea. Despite the importance of NCP for understanding biological carbon cycle of the ocean, the observations are rather limited to see the spatio-temporal variation in the Amundsen Sea. Therefore, we applied self-organizing map (SOM) analysis to expand our observed data sets and estimate the NCP during the summer season. SOM analysis, a type of artificial neural network, has been proved to be a useful method for extracting and classifying features in geoscience. In oceanography, SOM has applied for the analysis of various properties of the seawater such as sea surface temperature, chlorophyll concentration, pCO2, and NCP. Especially it is useful to expand a spatial coverage of direct measurements or to estimate properties whose satellite observations are technically or spatially limited. In this study, we estimate summer season NCP and find a variables set which optimally delineates the NCP variation in the Amundsen Sea as well. Moreover, we attempt to analyze the interannual variation of the Amundsen Sea NCP by taking climatological factors into account for the SOM analysis.

Modeling Circulation along the Vietnamese Coast Influenced by Monsoon Variability in Meteorology, River Discharge and Interactions with the Vietnamese East Sea

DTIC Science & Technology

2013-09-30

productivity. Advanced variational methods for the assimilation of satellite and in situ observations to achieve improved state estimation and subsequent...time for reviewing instructions, searching existing data sources, gathering and maintaining the data needed, and completing and reviewing the collection...South China Sea (SCS) using the Regional Ocean Modeling System (ROMS) with Incremental Strong Constraint 4-Dimensional Variational (IS4DVAR) data

Precipitation and ice core isotopes from the Asian Summer Monsoon region reflect coherent ENSO variability

NASA Astrophysics Data System (ADS)

Cai, Z.; Tian, L.; Bowen, G. J.

2017-12-01

Oxygen isotope signals (δ18O) from paleo-archives are important proxies for past Asian Summer Monsoon (ASM) climate reconstruction. However, causes of interannual variation in the δ18O values of modern precipitation across the ASM region remain in argument. We report interannual δ18O variation in southern Tibetan Plateau precipitation based on long-term observations at Lhasa. These data, together with precipitation δ18O records from five Global Network of Isotopes in Precipitation (GNIP) stations and two ice core δ18O records, were used to define a regional metric of ASM precipitation δ18O (ASMOI). Back-trajectory analyses for rainy season precipitation events indicate that moisture sources vary little between years with relatively high and low δ18O values, a result that is consistent for the south (Lhasa), southeast (Bangkok), and east ASM regions (Hong Kong). In contrast, δ18O values at these three locations are significantly correlated with convection in the estimated source regions and along transport paths. These results suggest that upstream convection, rather than moisture source change, causes interannual variation in ASM precipitation δ18O values. Contrasting values of the ASMOI in El Niño and La Niña years reveal a positive isotope-El Niño Southern Oscillation (ENSO) response (e.g., high values corresponding to warm phases), which we interpret as a response to changes in regional convection. We show that the isotope-ENSO response is amplified at high elevation sites and during La Niña years. These findings should improve interpretations of paleo-δ18O data as a proxy for past ASM variation and provide new opportunities to use data from this region to study paleo-ENSO activity.

ENSO variability reflected in precipitation oxygen isotopes across the Asian Summer Monsoon region

NASA Astrophysics Data System (ADS)

Cai, Zhongyin; Tian, Lide; Bowen, Gabriel J.

2017-10-01

Oxygen isotope signals (δ18O) from paleo-archives are important proxies for past Asian Summer Monsoon (ASM) climate reconstruction. However, causes of interannual variation in the δ18O values of modern precipitation across the ASM region remain in argument. We report interannual δ18O variation in southern Tibetan Plateau precipitation based on long-term observations at Lhasa. These data, together with precipitation δ18O records from five Global Network of Isotopes in Precipitation (GNIP) stations and two ice core δ18O records, were used to define a regional metric of ASM precipitation δ18O (ASMOI). Back-trajectory analyses for rainy season precipitation events indicate that moisture sources vary little between years with relatively high and low δ18O values, a result that is consistent for the south (Lhasa), southeast (Bangkok), and east ASM regions (Hong Kong). In contrast, δ18O values at these three locations are significantly correlated with convection in the estimated source regions and along transport paths. These results suggest that upstream convection, rather than moisture source change, causes interannual variation in ASM precipitation δ18O values. Contrasting values of the ASMOI in El Niño and La Niña years reveal a positive isotope-El Niño Southern Oscillation (ENSO) response (e.g., high values corresponding to warm phases), which we interpret as a response to changes in regional convection. We show that the isotope-ENSO response is amplified at high elevation sites and during La Niña years. These findings should improve interpretations of paleo-δ18O data as a proxy for past ASM variation and provide new opportunities to use data from this region to study paleo-ENSO activity.

Mass-induced sea level variations in the Red Sea from steric-corrected altimetry, GRACE, in-situ bottom pressure records, and hydrographic observations

NASA Astrophysics Data System (ADS)

Feng, Wei; Lemoine, Jean-Michel; Zhong, Min; Xu, Houze

2014-05-01

An annual amplitude of ~18 cm mass-induced sea level variations (SLV) in the Red Sea is detected from steric-corrected altimetry and the Gravity Recovery and Climate Experiment (GRACE) satellites from 2003 to 2011, which dominates the mean sea level in the region. Seawater mass variations here generally reach maximum in late January/early February. The steric component of SLV calculated from oceanographic temperature and salinity data is relatively small and peaks about seven months later than mass variations. The phase difference between the steric SLV and the mass-induced SLV indicates that when the Red Sea gains the mass from inflow water in winter, the steric SLV fall, and vice versa in summer. In-situ bottom pressure records in the eastern coast of the Red Sea validate the high mass variability observed by steric-corrected altimetry and GRACE. Furthermore, we compare the horizontal water mass flux in the Red Sea from steric-corrected altimetry and GRACE with that estimated from hydrographic observations.

Trends and Regional Variation in Hospital Mortality, Length of Stay and Cost in Hospital of Ischemic Stroke Patients in Alberta Accompanying the Provincial Reorganization of Stroke Care.

PubMed

Ohinmaa, Arto; Zheng, Yufei; Jeerakathil, Thomas; Klarenbach, Scott; Häkkinen, Unto; Nguyen, Thanh; Friesen, Dan; Ruseski, Jane; Kaul, Padma; Ariste, Ruolz; Jacobs, Philip

2016-12-01

This study aimed to evaluate the trends and regional variation of stroke hospital care in 30-day in-hospital mortality, hospital length of stay (LOS), and 1-year total hospitalization cost after implementation of the Alberta Provincial Stroke Strategy. New ischemic stroke patients (N = 7632) admitted to Alberta acute care hospitals between 2006 and 2011 were followed for 1 year. We analyzed in-hospital mortality with logistic regression, LOS with negative binomial regression, and the hospital costs with generalized gamma model (log link). The risk-adjusted results were compared over years and between zones using observed/expected results. The risk-adjusted mortality rates decreased from 12.6% in 2006/2007 to 9.9% in 2010/2011. The regional variations in mortality decreased from 8.3% units in 2008/2009 to 5.6 in 2010/2011. The LOS of the first episode dropped significantly in 2010/2011 after a 4-year slight increase. The regional variation in LOS was 15.5 days in 2006/2007 and decreased to 10.9 days in 2010/2011. The 1-year hospitalization cost increased initially, and then kept on declining during the last 3 years. The South and Calgary zones had the lowest costs over the study period. However, this gap was diminishing. After implementation of the Alberta Provincial Stroke Strategy, both mortality and hospital costs demonstrated a decreasing trend during the later years of study. The LOS increased slightly during the first 4 years but had a significant drop at the last year. In general, the regional variations in all 3 indicators had a diminishing trend. Copyright © 2016 National Stroke Association. Published by Elsevier Inc. All rights reserved.

Global Distribution of Density Irregularities in the Equatorial Ionosphere

NASA Technical Reports Server (NTRS)

Kil, Hyosub; Heelis, R. A.

1998-01-01

We analyzed measurements of ion number density made by the retarding potential analyzer aboard the Atmosphere Explorer-E (AE-E) satellite, which was in an approximately circular orbit at an altitude near 300 km in 1977 and later at an altitude near 400 km. Large-scale (greater than 60 km) density measurements in the high-altitude regions show large depletions of bubble-like structures which are confined to narrow local time longitude, and magnetic latitude ranges, while those in the low-altitude regions show relatively small depletions which are broadly distributed,in space. For this reason we considered the altitude regions below 300 km and above 350 km and investigated the global distribution of irregularities using the rms deviation delta N/N over a path length of 18 km as an indicator of overall irregularity intensity. Seasonal variations of irregularity occurrence probability are significant in the Pacific regions, while the occurrence probability is always high in die Atlantic-African regions and is always low in die Indian regions. We find that the high occurrence probability in the Pacific regions is associated with isolated bubble structures, while that near 0 deg longitude is produced by large depictions with bubble structures which are superimposed on a large-scale wave-like background. Considerations of longitude variations due to seeding mechanisms and due to F region winds and drifts are necessary to adequately explain the observations at low and high altitudes. Seeding effects are most obvious near 0 deg longitude, while the most easily observed effect of the F region is the suppression of irregularity growth by interhemispheric neutral winds.

Extensive length variation in the ribosomal DNA intergenic spacer of yellow perch (Perca flavescens).

PubMed

Kakou, Bidénam; Angers, Bernard; Glémet, Hélène

2016-03-01

The intergenic spacer (IGS) is located between ribosomal RNA (rRNA) gene copies. Within the IGS, regulatory elements for rRNA gene transcription are found, as well as a varying number of other repetitive elements that are at the root of IGS length heterogeneity. This heterogeneity has been shown to have a functional significance through its effect on growth rate. Here, we present the structural organization of yellow perch (Perca flavescens) IGS based on its entire sequence, as well as the IGS length variation within a natural population. Yellow perch IGS structure has four discrete regions containing tandem repeat elements. For three of these regions, no specific length class was detected as allele size was seemingly normally distributed. However, for one repeat region, PCR amplification uncovered the presence of two distinctive IGS variants representing a length difference of 1116 bp. This repeat region was also devoid of any CpG sites despite a high GC content. Balanced selection may be holding the alleles in the population and would account for the high diversity of length variants observed for adjacent regions. Our study is an important precursor for further work aiming to assess the role of IGS length variation in influencing growth rate in fish.

Linking stream ecology with morphological variability in a native freshwater fish from semi-arid Australia

PubMed Central

Lostrom, Samantha; Evans, Jonathan P; Grierson, Pauline F; Collin, Shaun P; Davies, Peter M; Kelley, Jennifer L

2015-01-01

Environmental variation is a potent force affecting phenotypic expression. While freshwater fishes have provided a compelling example of the link between the environment and phenotypic diversity, few studies have been conducted with arid-zone fishes, particularly those that occur in geographically isolated regions where species typically inhabit intermittent and ephemeral creeks. We investigated morphological variation of a freshwater fish (the western rainbowfish, Melanotaenia australis) inhabiting creeks in the Pilbara region of northwest Australia to determine whether body shape variation correlated with local environmental characteristics, including water velocity, habitat complexity, predator presence, and food availability. We expected that the geographic isolation of creeks within this arid region would result in habitat-specific morphological specializations. We used landmark-based geometric morphometrics to quantify the level of morphological variability in fish captured from 14 locations within three distinct subcatchments of a major river system. Western rainbowfish exhibited a range of morphologies, with variation in body depth accounting for a significant proportion (>42%) of the total variance in shape. Sexual dimorphism was also apparent, with males displaying deeper bodies than females. While the measured local habitat characteristics explained little of the observed morphological variation, fish displayed significant morphological differentiation at the level of the subcatchment. Local adaptation may partly explain the geographic patterns of body shape variation, but fine-scale genetic studies are required to disentangle the effects of genetic differentiation from environmentally determined phenotypic plasticity in body shape. Developing a better understanding of environment–phenotype relationships in species from arid regions will provide important insights into ecological and evolutionary processes in these unique and understudied habitats. PMID:26380663

Conserved Genetic Architecture Underlying Individual Recombination Rate Variation in a Wild Population of Soay Sheep (Ovis aries)

PubMed Central

Johnston, Susan E.; Bérénos, Camillo; Slate, Jon; Pemberton, Josephine M.

2016-01-01

Meiotic recombination breaks down linkage disequilibrium (LD) and forms new haplotypes, meaning that it is an important driver of diversity in eukaryotic genomes. Understanding the causes of variation in recombination rate is important in interpreting and predicting evolutionary phenomena and in understanding the potential of a population to respond to selection. However, despite attention in model systems, there remains little data on how recombination rate varies at the individual level in natural populations. Here we used extensive pedigree and high-density SNP information in a wild population of Soay sheep (Ovis aries) to investigate the genetic architecture of individual autosomal recombination rates. Individual rates were high relative to other mammal systems and were higher in males than in females (autosomal map lengths of 3748 and 2860 cM, respectively). The heritability of autosomal recombination rate was low but significant in both sexes (h2 = 0.16 and 0.12 in females and males, respectively). In females, 46.7% of the heritable variation was explained by a subtelomeric region on chromosome 6; a genome-wide association study showed the strongest associations at locus RNF212, with further associations observed at a nearby ∼374-kb region of complete LD containing three additional candidate loci, CPLX1, GAK, and PCGF3. A second region on chromosome 7 containing REC8 and RNF212B explained 26.2% of the heritable variation in recombination rate in both sexes. Comparative analyses with 40 other sheep breeds showed that haplotypes associated with recombination rates are both old and globally distributed. Both regions have been implicated in rate variation in mice, cattle, and humans, suggesting a common genetic architecture of recombination rate variation in mammals. PMID:27029733

Conserved Genetic Architecture Underlying Individual Recombination Rate Variation in a Wild Population of Soay Sheep (Ovis aries).

PubMed

Johnston, Susan E; Bérénos, Camillo; Slate, Jon; Pemberton, Josephine M

2016-05-01

Meiotic recombination breaks down linkage disequilibrium (LD) and forms new haplotypes, meaning that it is an important driver of diversity in eukaryotic genomes. Understanding the causes of variation in recombination rate is important in interpreting and predicting evolutionary phenomena and in understanding the potential of a population to respond to selection. However, despite attention in model systems, there remains little data on how recombination rate varies at the individual level in natural populations. Here we used extensive pedigree and high-density SNP information in a wild population of Soay sheep (Ovis aries) to investigate the genetic architecture of individual autosomal recombination rates. Individual rates were high relative to other mammal systems and were higher in males than in females (autosomal map lengths of 3748 and 2860 cM, respectively). The heritability of autosomal recombination rate was low but significant in both sexes (h(2) = 0.16 and 0.12 in females and males, respectively). In females, 46.7% of the heritable variation was explained by a subtelomeric region on chromosome 6; a genome-wide association study showed the strongest associations at locus RNF212, with further associations observed at a nearby ∼374-kb region of complete LD containing three additional candidate loci, CPLX1, GAK, and PCGF3 A second region on chromosome 7 containing REC8 and RNF212B explained 26.2% of the heritable variation in recombination rate in both sexes. Comparative analyses with 40 other sheep breeds showed that haplotypes associated with recombination rates are both old and globally distributed. Both regions have been implicated in rate variation in mice, cattle, and humans, suggesting a common genetic architecture of recombination rate variation in mammals. Copyright © 2016 by the Genetics Society of America.

Morphology of ionospheric F2 region variability associated with sudden stratospheric warmings

NASA Astrophysics Data System (ADS)

Gupta, Sumedha; Upadhayaya, A. K.

2017-07-01

The effect of sudden stratospheric warming (SSW) on the F2 region ionosphere has been extensively analyzed for the major event of year 2009, apart from a few reports on other major and minor events. Morphology of ionospheric responses during SSW can be better comprehended by analyzing such warming events under different solar, geomagnetic, and meteorological conditions. We investigate the features of F2 region variability following the SSW events of 2010, 2011, 2012, 2013, 2014, 2015, and 2016, using ionosonde data from the Asian region covering a broad latitudinal range from 26.6°N to 45.1°N. We find perceptible ionospheric variations in electron densities during these warming events which is accompanied by a large variation of 117% within enhancements, as compared to a meagre variation of 11% within depressions, during these events. We also examine 6 months data at these latitudes and longitudes and find that the maximum and minimum variations in F2 layer critical frequency are observed during each SSW period. The influence of quasi-stationary 16 day planetary waves is seen during these SSW events. Further, a recently proposed parameter "SSW integrated strength" by Vieira et al. (2017) to characterize SSW event with respect to ionosphere is also examined. It is seen that it does not fit well for these seven SSW events at these latitudes and longitudes.

Estimating decay in 40- to 90-year-old grand fir stands in the Clearwater region of northern Idaho.

Treesearch

Gregory M. Filip; John W. Schwandt; Susan K. Hagle

1990-01-01

The fir decay equation for Oregon and Washington was used to predict stem decay in 12 grand fir (Abies grandis (Dougl. ex D. Don) Lindl.) stands in the Clearwater region of northern Idaho. These 12 stands represented a range in geographic and stand characteristic variation. All 12 observed decay percentages were within their associated 95-percent...

Leaf morphology shift linked to climate change.

PubMed

Guerin, Greg R; Wen, Haixia; Lowe, Andrew J

2012-10-23

Climate change is driving adaptive shifts within species, but research on plants has been focused on phenology. Leaf morphology has demonstrated links with climate and varies within species along climate gradients. We predicted that, given within-species variation along a climate gradient, a morphological shift should have occurred over time due to climate change. We tested this prediction, taking advantage of latitudinal and altitudinal variations within the Adelaide Geosyncline region, South Australia, historical herbarium specimens (n = 255) and field sampling (n = 274). Leaf width in the study taxon, Dodonaea viscosa subsp. angustissima, was negatively correlated with latitude regionally, and leaf area was negatively correlated with altitude locally. Analysis of herbarium specimens revealed a 2 mm decrease in leaf width (total range 1-9 mm) over 127 years across the region. The results are consistent with a morphological response to contemporary climate change. We conclude that leaf width is linked to maximum temperature regionally (latitude gradient) and leaf area to minimum temperature locally (altitude gradient). These data indicate a morphological shift consistent with a direct response to climate change and could inform provenance selection for restoration with further investigation of the genetic basis and adaptive significance of observed variation.

Regional distribution of the high-altitude clouds over the Indian subcontinent and surrounding oceanic regions based on seven years of satellite observations

NASA Astrophysics Data System (ADS)

Meenu, S.; Rajeev, K.; Parameswaran, K.; Suresh Raju, C.

2006-12-01

Quantitative estimates of the spatio-temporal variations in deep convective events over the Indian subcontinent, Arabian Sea, Bay of Bengal, and tropical Indian Ocean are carried out using the data obtained from Advanced Very High Resolution Radiometer (AVHRR) onboard NOAA-14 and NOAA-16 during the period 1996-2003. Pixels having thermal IR brightness temperature (BT) less than 245K are considered as high altitude clouds and those having BT<220 K are considered as very high altitude clouds. Very deep convective clouds are observed over north Bay of Bengal during the Asian summer monsoon season when the mean cloud top temperature reaches as low as 190K. Over the Head Bay of Bengal (HBoB) from June to September, more than 50% of the observed clouds are deep convective type and more than half of these deep convective clouds are very deep convective clouds. Histogram analysis of the cloud top temperatures during this period shows that over HBoB the most prominent cloud top temperature of the deep convective clouds is ~205K over the HBoB while that over southeast Arabian Sea (SEAS) is ~220K. This indicates that most probably the cloud top altitude over HBoB is ~2 km larger than that over SEAS during the Asian summer monsoon period. Another remarkable feature observed during the Asian summer monsoon period is the significantly low values of deep convective clouds observed over the south Bay of Bengal close to Srilanka, which appears as a large pool of reduced cloud amount surrounded by regions of large-scale deep convection. Over both SEAS and HBoB, the total, deep convective and very deep convective cloud amounts as well as their corresponding cloud top temperatures (or the altitude of the cloud top) undergo large seasonal variations, while such variations are less prominent over the eastern equatorial Indian Ocean.

MC1R diversity in Northern Island Melanesia has not been constrained by strong purifying selection and cannot explain pigmentation phenotype variation in the region.

PubMed

Norton, Heather L; Werren, Elizabeth; Friedlaender, Jonathan

2015-10-19

Variation in human skin pigmentation evolved in response to the selective pressure of ultra-violet radiation (UVR). Selection to maintain darker skin in high UVR environments is expected to constrain pigmentation phenotype and variation in pigmentation loci. Consistent with this hypothesis, the gene MC1R exhibits reduced diversity in African populations from high UVR regions compared to low-UVR non-African populations. However, MC1R diversity in non-African populations that have evolved under high-UVR conditions is not well characterized. In order to test the hypothesis that MC1R variation has been constrained in Melanesians the coding region of the MC1R gene was sequenced in 188 individuals from Northern Island Melanesia. The role of purifying selection was assessed using a modified McDonald Kreitman's test. Pairwise FST was calculated between Melanesian populations and populations from the 1000 Genomes Project. The SNP rs2228479 was genotyped in a larger sample (n = 635) of Melanesians and tested for associations with skin and hair pigmentation. We observe three nonsynonymous and two synonymous mutations. A modified McDonald Kreitman's test failed to detect a significant signal of purifying selection. Pairwise FST values calculated between the four islands sampled here indicate little regional substructure in MC1R. When compared to African, European, East and South Asian populations, Melanesians do not exhibit reduced population divergence (measured as FST) or a high proportion of haplotype sharing with Africans, as one might expect if ancestral haplotypes were conserved across high UVR populations in and out of Africa. The only common nonsynonymous polymorphism observed, rs2228479, is not significantly associated with skin or hair pigmentation in a larger sample of Melanesians. The pattern of sequence diversity here does not support a model of strong selective constraint on MC1R in Northern Island Melanesia This absence of strong constraint, as well as the recent population history of the region, may explain the observed frequencies of the derived rs2228479 allele. These results emphasize the complex genetic architecture of pigmentation phenotypes, which are controlled by multiple, possibly interacting loci. They also highlight the role that population history can play in influencing phenotypic diversity in the absence of strong natural selection.

Variations of transparency derived from GOCI in the Bohai Sea and the Yellow Sea.

PubMed

Mao, Ying; Wang, Shengqiang; Qiu, Zhongfeng; Sun, Deyong; Bilal, Muhammad

2018-04-30

Secchi disk depth (Z sd ), represents water transparency which is an intuitive indicator of water quality and can be used to derive inherent optical properties, chlorophyll-a concentrations, and primary productivity. In this study, the Z sd was derived from the Geostationary Ocean Color Imager (GOCI) data over the Bohai Sea (BHS) and the Yellow Sea (YS) using a regional tuned model. To validate the GOCI derived Z sd observations, in situ data, were collected for the BHS and YS regions. Results showed a good agreement between the GOCI derived Z sd observations and in situ measurements with a determination coefficient of 0.90, root mean square error of 2.17 m and mean absolute percent error of 24.56%. Results for diurnal variations showed an increasing trend of Z sd at the first and then decreasing, and all the maxima of Z sd in the central areas of the BHS and YS were found in the midday. For seasonal variations, higher values of Z sd , both in range and intensity, were observed in summer compared with those in winter. The reasons to explain the variations of Z sd have also been explored. Solar zenith angle (SOLZ) has an impact on the daily dynamics of Z sd , due to the influence of SOLZ on the attenuation of light radiation in water. The influence level of SOLZ on Z sd is largely determined by the water bodies' composition. The significant seasonal variations are mainly controlled by the stability of the water column stratification, because it can lead to the sediment resuspension and influence the growth and distribution of phytoplankton. Runoff and sediment discharge are not the main factors that impact the seasonal dynamics of Z sd. Tidal currents and mean currents may have influences on the variations of Z sd . However, due to the lack of in situ measurements to support, further studies are still needed.

Ozone in the marine boundary layer of Bay of Bengal and Arabian Sea during post winter period - continental influence

NASA Astrophysics Data System (ADS)

Nair, Prabha R.; George, Susan K.; David, Liji Mary; Parameswaran, Krishnaswamy

Ozone plays a key role in controlling the oxidation capacity of the troposphere and hence the lifetime of a variety of trace gases in the atmosphere. In pristine marine boundary layer (MBL), entire chemistry is initiated by the photolysis of ozone and the subsequent formation of OH radical from water vapour. Also in such environment, photochemical destruction is considered as a major sink in global ozone budget. Even though large number of studies on near surface ozone has been carried out over land such studies are very few over oceanic environments. This paper presents the observational results on the spatial variations of near-surface ozone over Bay of Bengal and Arabian Sea as revealed by the cruise-based measurements (cruise No. SK223) conducted as part of Integrated Campaign for Aerosol gases and Radiation Budget (ICARB) under the Geosphere Biosphere Programme of Indian Space Research Organisation (IGBP). Online measurements of ozone have been carried out by using a UV Photometric Analyser (model 49C of Thermo Electron Corporation, USA). Ozone mixing ratio was observed to be significantly high over northern Bay of Bengal (20-28 ppb) compared to southern Bay of Bengal and Arabian Sea. Minimum levels of ozone ( 5 ppb) have been measured in the central Bay of Bengal region. Over Arabian Sea latitudinal variation was not prominently observed. The over all latitudinal gradient is estimated to be 1.2 ppb/o latitude over Bay of Bengal with longitudinal gradient showing variation depending on the latitude sector. It was maximum (of 1.2ppb/o longitude) over the mid Bay of Bengal region ( 15o N). Longitudinal variation was not significant over northern and southern regions. A close examination of surface airflow patterns and the air mass back trajectories revealed increase in ozone level associated with continental outflow from the northern and central parts of the subcontinent. The diurnal pattern also showed variations depending on the proximity to inhabited land mass and also with meteorological parameters.

Diurnal variation of marine stratocumulus over San Nicolas Island during the FIRE IFO

NASA Technical Reports Server (NTRS)

Davies, R.; Blaskovic, M.

1990-01-01

Preliminary analysis was made of data collected at San Nicolas Island during the Intensive Field Observation (IFO) phase of the First International Satellite Cloud Climatology Program's Regional Experiment (FIRE). Of particular interest was an examination of a distinct diurnal variation in the cloud properties, despite an apparent absence of diurnal forcing from the surface. Direct or indirect radiative modulation of such clouds, as proposed by Fravalo at el. (1981) and Turton and Nicholls (1987) indeed seems likely. Preliminary observational evidence for diurnal change in the marine stratocumulus adjacent to San Nicolas Island is presented. A comparison is then made between the observed behavior and predictions from theoretical models of the interactive effect of radiation on boundary layer clouds.

The JCMT Transient Survey: Data Reduction and Calibration Methods

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mairs, Steve; Lane, James; Johnstone, Doug

Though there has been a significant amount of work investigating the early stages of low-mass star formation in recent years, the evolution of the mass assembly rate onto the central protostar remains largely unconstrained. Examining in depth the variation in this rate is critical to understanding the physics of star formation. Instabilities in the outer and inner circumstellar disk can lead to episodic outbursts. Observing these brightness variations at infrared or submillimeter wavelengths constrains the current accretion models. The JCMT Transient Survey is a three-year project dedicated to studying the continuum variability of deeply embedded protostars in eight nearby star-formingmore » regions at a one-month cadence. We use the SCUBA-2 instrument to simultaneously observe these regions at wavelengths of 450 and 850 μ m. In this paper, we present the data reduction techniques, image alignment procedures, and relative flux calibration methods for 850 μ m data. We compare the properties and locations of bright, compact emission sources fitted with Gaussians over time. Doing so, we achieve a spatial alignment of better than 1″ between the repeated observations and an uncertainty of 2%–3% in the relative peak brightness of significant, localized emission. This combination of imaging performance is unprecedented in ground-based, single-dish submillimeter observations. Finally, we identify a few sources that show possible and confirmed brightness variations. These sources will be closely monitored and presented in further detail in additional studies throughout the duration of the survey.« less

Variation in osteocyte lacunar morphology and density in the human femur - a synchrotron radiation micro-CT study

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carter, Yasmin; Thomas, C David L.; Clement, John G

2013-04-09

In recent years there has been growing interest in the spatial properties of osteocytes (including density and morphology) and how these potentially relate to adaptation, disease and aging. This interest has, in part, arisen from the availability of increasingly high-resolution 3D imaging modalities such as synchrotron radiation (SR) micro-CT. As resolution increases, field of view generally decreases. Thus, while increasingly detailed spatial information is obtained, it is unclear how representative this information is of the skeleton or even the isolated bone. The purpose of this research was to describe the variation in osteocyte lacunar density, morphology and orientation within themore » femur from a healthy young male human. Multiple anterior, posterior, medial and lateral blocks (2 mm × 2 mm) were prepared from the proximal femoral shaft and SR micro-CT imaged at the Advanced Photon Source. Average lacunar densities (± standard deviation) from the anterior, posterior, medial and lateral regions were 27,169 ± 1935, 26,3643 ± 1262, 37,521 ± 6416 and 33,972 ± 2513 lacunae per mm 3 of bone tissue, respectively. These values were significantly different between the medial and both the anterior and posterior regions (p < 0.05). The density of the combined anterior and posterior regions was also significantly lower (p = 0.001) than the density of the combined medial and lateral regions. Although no difference was found in predominant orientation, shape differences were found; with the combined anterior and posterior regions having more elongated (p = 0.004) and flattened (p = 0.045) lacunae, than those of the medial and lateral regions. This study reveals variation in osteocyte lacunar density and morphology within the cross-section of a single bone and that this variation can be considerable (up to 30% difference in density between regions). The underlying functional significance of the observed variation in lacunar density likely relates to localized variations in loading conditions as the pattern corresponds well with mechanical axes. Lower density and more elongate shapes being associated with the antero-posterior oriented neutral axis. Our findings demonstrate that the functional and pathological interpretations that are increasingly being drawn from high resolution imaging of osteocyte lacunae need to be better situated within the broader context of normal variation, including that which occurs even within a single skeletal element.« less

Search for Local Variations of Atmospheric H2O and CO on Mars with PFS/Mars Express

NASA Astrophysics Data System (ADS)

Lellouch, E.; Encrenaz, T.; Fouchet, T.; Billebaud, F.; Formisano, V.; Atreya, S.; Ignatiev, N.; Moroz, V.; Maturilli, A.; Grassi, D.; Pfs Team

Spectra recorded by the PFS instrument onboard Mars Express include clear spectral signatures due to CO at 4.7 and 2.3 micron, and H2O at 1.38, 2.6 and 30-50 micron. These features can be used to determine the horizontal distribution of these species on global and local scales and to monitor it with time. Here we investigate the local variations of H2O and CO, focussing on the regions of high-altitude volcanoes. Preliminary results suggest a significant decrease of the CO mixing ratio in these regions, as was found from ISM/Phobos observations (Rosenqvist et al. Icarus 98, 254, 1992).

Gravity and Displacement Variations in the Areas of Strong Earthquakes in the East of Russia

NASA Astrophysics Data System (ADS)

Timofeev, V. Yu.; Kalish, E. N.; Stus', Yu. F.; Ardyukov, D. G.; Valitov, M. G.; Timofeev, A. V.; Nosov, D. A.; Sizikov, I. S.; Boiko, E. V.; Gornov, P. Yu.; Kulinich, R. G.; Kolpashchikova, T. N.; Proshkina, Z. N.; Nazarov, E. O.; Kolmogorov, V. G.

2018-05-01

The modern gravimetry methods are capable of measuring gravity with an accuracy of up to 10-10 of the normal value, which is commensurate with the accuracy of the up-to-date methods of displacement measurements by satellite geodesy. Significant changes, e.g., in the coseismic displacements of the Earth's surface are recorded in the zones of large earthquakes. These changes should manifest themselves in the variations of gravity. Absolute measurements have been conducted by various modifications of absolute ballistic gravimeters GABL since the mid-1970s at the Klyuchi point (Novosibirsk) in the south of the West Siberian plate. Monitoring observations have been taking place in the seismically active regions since the 1990s. In this paper we consider the results of the long-term measurements of the variations in gravity and recent crustal displacements for different types of earthquakes (the zones of shear, extension, and compression). In the seismically active areas in the east of Russia, the longest annual series of absolute measurements starting from 1992 was recorded in the southeastern segment of Baikal region. In this area, the Kultuk earthquake with magnitude 6.5 occurred on August 27, 2008, at a distance of 25 km from the observation point of the Talaya seismic station. The measurements in Gornyi (Mountainous) Altai have been conducted since 2000. A strikeslip earthquake with magnitude 7.5 took place in the southern segment of the region on September 27, 2003. The effects of the catastrophic M = 9.0 Tohoku, Japan, earthquake of March 11, 2011 were identified in Primor'e in the far zone of the event. The empirical data are consistent with the results of modeling based on the seismological data. The coseismic variations in gravity are caused by the combined effect of the changes in the elevation of the observation point and crustal deformation.

Mid-Infrared Ethane Emission on Neptune: 2005-2009

NASA Astrophysics Data System (ADS)

Hammel, Heidi B.; Sitko, M. L.; Russell, R. W.; Lynch, D. K.; Bernstein, L. S.; Perry, R. B.

2009-09-01

Hammel et al. (2006, ApJ 644, 1326) reported 8- to 13-micron spectral observations of Neptune spanning more than a decade. Those data indicated a steady increase in Neptune's 12-micron atmospheric ethane emission from 1985 to 2003, followed by a slight decrease in 2004. The simplest explanation for the intensity variation was an increase in stratospheric effective temperature from 155 K in 1985 to 176 K in 2003 (an average rate of 1.2 K/year), and subsequent decrease to 165 K in 2004 (uncertainties +/- 3 K). Later disk-resolved 12-micron images (Hammel et al. 2007, AJ 134, 637; Orton et al. 2007, AA 473, L5) showed Neptune's ethane emission arose mainly from two regions: emission distributed nearly uniformly around the planet's limb and emission near the south pole. Because much of the non-limb emission was confined to the near-polar region, seasonal variation may play some role in the long-term mid-infrared brightness variations: i.e., more of that region was revealed as Neptune neared solstice in 2005. We will report the results of an additional half decade of mid-infrared spectroscopic observations, from 2005 through 2009, using the Broadband Array Spectrograph System on the NASA Infrared Telescope Facility (IRTF). These post-solstice data should elucidate whether the variations are intrinsic, or due to changes in viewing angle. HBH acknowledges support from NASA grants NNX06AD12G and NNA07CN65A. This work was supported at The Aerospace Corporation by the Independent Research and Development Program. LSB acknowledges the support of Spectral Sciences, Inc. IR and D funding. We also gratefully acknowledge D. Kim (The Aerospace Corporation) for BASS technical support, as well as the support of IRTF staff and telescope operators. We recognize the significant cultural role of Mauna Kea within the indigenous Hawaiian community, and we appreciate the opportunity to conduct observations from this revered site.

Colliding stellar winds in the eclipsing Wolf-Rayet binary V444 Cygni

NASA Technical Reports Server (NTRS)

Brown, Douglas N.; Shore, Steven N.

1988-01-01

High resolution spectra of V444 Cygni have been obtained using the International Ultraviolet Explorer Satellite. These spectra span both eclipses and include one observation at third quadrature. Together with seven archival spectra, they provide reasonably complete phase coverage for the system. The variations in the P Cygni profiles of the He(II) and N(IV) lines, imply the existence of a low density region in the WR wind. This region occupies a relatively narrow range of orbital phase coinciding with the highest terminal velocities observed in C IV. These data are interpreted to be evidence of an interaction region separating the winds of the O-star and Wolf-Rayet star.

GRACE Hydrological estimates for small basins: Evaluating processing approaches on the High Plains Aquifer, USA

NASA Astrophysics Data System (ADS)

Longuevergne, Laurent; Scanlon, Bridget R.; Wilson, Clark R.

2010-11-01

The Gravity Recovery and Climate Experiment (GRACE) satellites provide observations of water storage variation at regional scales. However, when focusing on a region of interest, limited spatial resolution and noise contamination can cause estimation bias and spatial leakage, problems that are exacerbated as the region of interest approaches the GRACE resolution limit of a few hundred km. Reliable estimates of water storage variations in small basins require compromises between competing needs for noise suppression and spatial resolution. The objective of this study was to quantitatively investigate processing methods and their impacts on bias, leakage, GRACE noise reduction, and estimated total error, allowing solution of the trade-offs. Among the methods tested is a recently developed concentration algorithm called spatiospectral localization, which optimizes the basin shape description, taking into account limited spatial resolution. This method is particularly suited to retrieval of basin-scale water storage variations and is effective for small basins. To increase confidence in derived methods, water storage variations were calculated for both CSR (Center for Space Research) and GRGS (Groupe de Recherche de Géodésie Spatiale) GRACE products, which employ different processing strategies. The processing techniques were tested on the intensively monitored High Plains Aquifer (450,000 km2 area), where application of the appropriate optimal processing method allowed retrieval of water storage variations over a portion of the aquifer as small as ˜200,000 km2.

The behavior of seasonal variations in induced seismicity in the Koyna-Warna region, western India

NASA Astrophysics Data System (ADS)

Smirnov, V. B.; Srinagesh, D.; Ponomarev, A. V.; Chadha, R.; Mikhailov, V. O.; Potanina, M. G.; Kartashov, I. M.; Stroganova, S. M.

2017-07-01

Based on the earthquake catalog data for the Koyna-Warna region of induced seismicity in western India, the seasonal variations in seismic activity associated with annual fluctuations in the reservoir water level are analyzed over the time span of the entire history of seismological observations in this region. The regularities in the time changes in the structure of seasonal variations are revealed. The seasonal seismic activity is minimal in May-June when the reservoir level is lowest. During the remaining part of the year, the activity has three peaks: the fall peak in September, winter peak in November-December, and spring peak in February-March. The first mentioned peak, which falls in the phase of the water level reaching its maximal seasonal value is considered as the immediate response of the fluid saturated medium to the additional loading under the weight of reservoir water. The two subsequent maxima concur with the decline phase in the reservoir level and are interpreted as the delayed response associated with the changes in the properties of the medium due to water diffusion. It is shown that the intensities of the immediate and delayed responses to the seasonal water level variations both vary with time as does their ratio. The probable factors affecting the variations in the intensity of the seasonal components of the reservoir-induced seismicity are discussed.

OSO 8 observations of wave propagation in the solar chromosphere and transition region

NASA Technical Reports Server (NTRS)

Chipman, E. G.

1978-01-01

The University of Colorado instrument on OSO 8 has been used to observe relative phases of the 300-s intensity variation between the temperature-minimum region and several emission lines formed in the solar chromosphere and chromosphere-corona transition region. The lines used are due to Fe II, Si II, C II, Si IV, and C IV. The scattered light in the spectrograph, which originates almost entirely in the spectral region between 1700 and 1900 A, was used as a probe of the temperature-minimum region. The lines of Fe II, Si II, and C II show almost identical delays of approximately 30 s relative to the temperature minimum, while the intensity oscillations of the lines of Si IV and C IV appear to lead the temperature-minimum intensity oscillations by about 10 s.

Interannual and seasonal changes in the south seasonal polar cap of Mars: Observations from MY 28-31 using MARCI

NASA Astrophysics Data System (ADS)

Calvin, W. M.; Cantor, B. A.; James, P. B.

2017-08-01

The Mars Color Imager (MARCI) camera on the Mars Reconnaissance Orbiter provides daily synoptic coverage that allows monitoring of seasonal cap retreat and interannual changes that occur between Mars Years (MY) and over the southern summer. We present the first analysis of this data for the southern seasonal cap evolution observed in MY 28, 29, 30 and 31 (2/2007 to 07/2013). Observation over multiple Mars years allows us to compare changes between years as well as longer-term evolution of the high albedo deposits at the poles. Seasonal cap retreat is similar in all years and to retreats observed in other years by both optical and thermal instruments. The cryptic terrain has a fairly consistent boundary in each year, but numerous small-scale variations occur in each MY observed. Additionally, numerous small dark deposits are identified outside the classically identified cyptic region, including Inca City and other locations not previously noted. The large water ice outlier is observed to retain seasonal frost the longest (outside the polar dome) and is also highly variable in each MY. The development of the cryptic/anti-cryptic hemispheres is inferred to occur due to albedo variations that develop after dust venting starts and may be caused by recondensation of CO2 ice on the brightest and coldest regions controlled by topographic winds. Ground ice may play a role in which regions develop cryptic terrain, as there is no elevation control on either cryptic terrain or the late season brightest deposits.

Long-period variations of wind parameters in the mesopause region and the solar cycle dependence

NASA Technical Reports Server (NTRS)

Greisiger, K. M.; Schminder, R.; Kuerschner, D.

1987-01-01

The solar cycle dependence of wind parameters below 100 km on the basis of long term continuous ionospheric drift measurements in the low frequency range is discussed. For the meridional prevailing wind no significant variation was found. The same comparison as for winter was done for summer where the previous investigations gave no correlation. Now the radar meteor wind measurement values, too, showed a significant negative correlation of the zonal prevailing wind with solar activity for the years 1976 to 1983. The ionospheric drift measurement results of Collm have the same tendency but a larger dispersion due to the lower accuracy of the harmonic analysis because of the shorter daily measuring interval in summer. Continuous wind observations in the upper mesopause region over more than 20 years revealed distinct long term variations, the origin of which cannot be explained with the present knowledge.

Evidence of a genetic link between endometriosis and ovarian cancer.

PubMed

Lee, Alice W; Templeman, Claire; Stram, Douglas A; Beesley, Jonathan; Tyrer, Jonathan; Berchuck, Andrew; Pharoah, Paul P; Chenevix-Trench, Georgia; Pearce, Celeste Leigh

2016-01-01

To evaluate whether endometriosis-associated genetic variation affects risk of ovarian cancer. Pooled genetic analysis. University hospital. Genetic data from 46,176 participants (15,361 ovarian cancer cases and 30,815 controls) from 41 ovarian cancer studies. None. Endometriosis-associated genetic variation and ovarian cancer. There was significant evidence of an association between endometriosis-related genetic variation and ovarian cancer risk, especially for the high-grade serous and clear cell histotypes. Overall we observed 15 significant burden statistics, which was three times more than expected. By focusing on candidate regions from a phenotype associated with ovarian cancer, we have shown a clear genetic link between endometriosis and ovarian cancer that warrants further follow-up. The functional significance of the identified regions and SNPs is presently uncertain, though future fine mapping and histotype-specific functional analyses may shed light on the etiologies of both gynecologic conditions. Copyright © 2016. Published by Elsevier Inc.

Optimizing Photosynthetic and Respiratory Parameters Based on the Seasonal Variation Pattern in Regional Net Ecosystem Productivity Obtained from Atmospheric Inversion

NASA Astrophysics Data System (ADS)

Chen, Z.; Chen, J.; Zheng, X.; Jiang, F.; Zhang, S.; Ju, W.; Yuan, W.; Mo, G.

2014-12-01

In this study, we explore the feasibility of optimizing ecosystem photosynthetic and respiratory parameters from the seasonal variation pattern of the net carbon flux. An optimization scheme is proposed to estimate two key parameters (Vcmax and Q10) by exploiting the seasonal variation in the net ecosystem carbon flux retrieved by an atmospheric inversion system. This scheme is implemented to estimate Vcmax and Q10 of the Boreal Ecosystem Productivity Simulator (BEPS) to improve its NEP simulation in the Boreal North America (BNA) region. Simultaneously, in-situ NEE observations at six eddy covariance sites are used to evaluate the NEE simulations. The results show that the performance of the optimized BEPS is superior to that of the BEPS with the default parameter values. These results have the implication on using atmospheric CO2 data for optimizing ecosystem parameters through atmospheric inversion or data assimilation techniques.

Ionospheric responses during equinox and solstice periods over Turkey

NASA Astrophysics Data System (ADS)

Karatay, Secil; Cinar, Ali; Arikan, Feza

2017-11-01

Ionospheric electron density is the determining variable for investigation of the spatial and temporal variations in the ionosphere. Total Electron Content (TEC) is the integral of the electron density along a ray path that indicates the total variability through the ionosphere. Global Positioning System (GPS) recordings can be utilized to estimate the TEC, thus GPS proves itself as a useful tool in monitoring the total variability of electron distribution within the ionosphere. This study focuses on the analysis of the variations of ionosphere over Turkey that can be grouped into anomalies during equinox and solstice periods using TEC estimates obtained by a regional GPS network. It is observed that noon time depletions in TEC distributions predominantly occur in winter for minimum Sun Spots Numbers (SSN) in the central regions of Turkey which also exhibit high variability due to midlatitude winter anomaly. TEC values and ionospheric variations at solstice periods demonstrate significant enhancements compared to those at equinox periods.

Genomic analysis of local variation and recent evolution in Plasmodium vivax

PubMed Central

Pearson, Richard D; Miotto, Olivo; Almagro-Garcia, Jacob; Amaratunga, Chanaki; Suon, Seila; Mao, Sivanna; Noviyanti, Rintis; Trimarsanto, Hidayat; Marfurt, Jutta; Anstey, Nicholas M; William, Timothy; Boni, Maciej F; Dolecek, Christiane; Hien, Tinh Tran; White, Nicholas J; Michon, Pascal; Siba, Peter; Tavul, Livingstone; Harrison, Gabrielle; Barry, Alyssa; Mueller, Ivo; Ferreira, Marcelo U; Karunaweera, Nadira; Randrianarivelojosia, Milijaona; Gao, Qi; Hubbart, Christina; Hart, Lee; Jeffery, Ben; Drury, Eleanor; Mead, Daniel; Kekre, Mihir; Campino, Susana; Manske, Magnus; Cornelius, Victoria J; MacInnis, Bronwyn; Rockett, Kirk A; Miles, Alistair; Rayner, Julian C; Fairhurst, Rick M; Nosten, Francois; Price, Ric N; Kwiatkowski, Dominic P

2016-01-01

The widespread distribution and relapsing nature of Plasmodium vivax infection present major challenges for malaria elimination. To characterise the genetic diversity of this parasite within individual infections and across the population, we performed deep genome sequencing of >200 clinical samples collected across the Asia-Pacific region, and analysed data on >300,000 SNPs and 9 regions of the genome with large copy number variations. Individual infections showed complex patterns of genetic structure, with variation not only in the number of dominant clones but also in their level of relatedness and inbreeding. At the population level, we observed strong signals of recent evolutionary selection both in known drug resistance genes and at novel loci, and these varied markedly between geographical locations. These findings reveal a dynamic landscape of local evolutionary adaptation in P. vivax populations, and provide a foundation for genomic surveillance to guide effective strategies for control and elimination. PMID:27348299

X-ray emission from the Wolf-Rayet bubble NGC 6888 - II. XMM-Newton EPIC observations

NASA Astrophysics Data System (ADS)

Toalá, J. A.; Guerrero, M. A.; Chu, Y.-H.; Arthur, S. J.; Tafoya, D.; Gruendl, R. A.

2016-03-01

We present deep XMM-Newton European Photon Imaging Camera observations of the Wolf-Rayet (WR) bubble NGC 6888 around the star WR 136. The complete X-ray mapping of the nebula confirms the distribution of the hot gas in three maxima spatially associated with the caps and north-west blowout hinted at by previous Chandra observations. The global X-ray emission is well described by a two-temperature optically thin plasma model (T1 = 1.4 × 106 K, T2 = 8.2 × 106 K) with a luminosity of LX = 7.8 × 1033 erg s-1 in the 0.3-1.5 keV energy range. The rms electron density of the X-ray-emitting gas is estimated to be ne = 0.4 cm-3. The high-quality observations presented here reveal spectral variations within different regions in NGC 6888, which allowed us for the first time to detect temperature and/or nitrogen abundance inhomogeneities in the hot gas inside a WR nebula. One possible explanation for such spectral variations is that the mixing of material from the outer nebula into the hot bubble is less efficient around the caps than in other nebular regions.

Observation of Sudden Ionospheric Disturbances over Istanbul in Response to X-Ray Flare Events

NASA Astrophysics Data System (ADS)

Ceren Kalafatoglu Eyiguler, Emine; Kaymaz, Zerefsan; Ceren Moral, Aysegul

2016-07-01

Sudden ionospheric disturbances (SID) are the enhanced electron density structures in the D region ionosphere which occur in response to the increase in X-ray flares and EUV flux. SIDs can be monitored using Very Low Frequency (VLF) radio signals (3-30 kHz) which travel between the D-region and the surface of the Earth. In this study, we use SID monitors obtained from the Stanford University Solar Center and two antennas which were built at the Istanbul Technical University to track the ionospheric disturbances in the VLF range. Our antennas are capable of capturing signals from several VLF transmitting stations. In this work, we focus on the variations in the signal strength of the closest VLF transmitting station 'TBB' which is operating at 26.7 kHz frequency at BAFA, Turkey (37.43N, 27.15E). We present ITU SID observations from both antennas; show the daily variation, general structure and the typical patterns we observe as well as case studies of significant events. Our initial analysis shows close relationship between observed X-ray flares from geosynchronous GOES 13 and GOES 15 satellites and VLF station signal strength received by the monitors.

Rotational modulation of the chromospheric activity in the young solar-type star, X-1 Orionis

NASA Technical Reports Server (NTRS)

Boesgaard, A. M.; Simon, T.

1982-01-01

The IUE satellite was used to observe one of the youngest G stars (GO V) for which Duncan (1981) derives an age of 6 x 10 to the 8th power years from the Li abundance. Rotational modulation was looked for in the emission flux in the chromospheric and transition region lines of this star. Variations in the Ca 11 K-lines profile were studied with the CHF telescope at Mauna Kea. Results show that the same modulation of the emission flux of Ca 11 due to stellar rotation is present in the transition region feature of C IV and probably of He II. For other UV lines the modulation is not apparent, due to a more complex surface distribution of the active areas or supergranulation network, or a shorter lifetime of the conditions which give rise to these features, or to the uncertainities in the measured line strengths. The Mg II emission flux is constant to within + or - 3.4% implying a rather uniform distribution of Mg II emission areas. The Ca II emission not only shows a measurable variation in intensity but also variations in detailed line profile shape when observed at high resolution.

Inter-annual variation of the surface temperature of tropical forests from SSM/I observations

NASA Astrophysics Data System (ADS)

Gao, H.; Fu, R.; Li, W.; Zhang, S.; Dickinson, R. E.

2014-12-01

Land surface temperatures (LST) within tropical rain forests contribute to climate variation, but observational data are very limited in these regions. In this study, all weather canopy sky temperatures were retrieved using the passive microwave remote sensing data from the Special Sensor Microwave/Imager (SSM/I) and the Special Sensor Microwave Imager/Sounder (SSMIS) over the Amazon and Congo rainforests. The remote sensing data used were collected from 1996 to 2012 using two separate satellites—F13 (1996-2009) and F17 (2007-2012). An inter-sensor calibration between the brightness temperatures collected by the two satellites was conducted in order to ensure consistency amongst the instruments. The interannual changes of LST associated with the dry and wet anomalies were investigated in both regions. The dominant spatial and temporal patterns for inter-seasonal variations of the LST over the tropical rainforest were analyzed, and the impacts of droughts and El Niños (on LST) were also investigated. The remote sensing results suggest that the morning LST is mainly controlled by atmospheric humidity (which controls longwave radiation) whereas the late afternoon LST is controlled by solar radiation.

Spatial and temporal variations of aerosols around Beijing in summer 2006: 2. Local and column aerosol optical properties

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matsui, Hitoshi; Koike, Makoto; Kondo, Yutaka

Weather Research and Forecasting (WRF)-chem model calculations were conducted to study aerosol optical properties around Beijing, China, during the Campaign of Air Quality Research in Beijing and Surrounding Region 2006 (CAREBeijing-2006) period. In this paper, we interpret aerosol optical properties in terms of aerosol mass concentrations and their chemical compositions by linking model calculations with measurements. In general, model calculations reproduced observed features of spatial and temporal variations of various surface and column aerosol optical parameters in and around Beijing. Spatial and temporal variations of aerosol absorption, scattering, and extinction coefficient corresponded well to those of elemental carbon (primary aerosol),more » sulfate (secondary aerosol), and the total aerosol mass concentration, respectively. These results show that spatial and temporal variations of the absorption coefficient are controlled by local emissions (within 100 km around Beijing during the preceding 24 h), while those of the scattering coefficient are controlled by regional-scale emissions (within 500 km around Beijing during the preceding 3 days) under synoptic-scale meteorological conditions, as discussed in our previous study of aerosol mass concentration. Vertical profiles of aerosol extinction revealed that the contribution of secondary aerosols and their water uptake increased with altitude within the planetary boundary layer, leading to a considerable increase in column aerosol optical depth (AOD) around Beijing. These effects are the main factors causing differences in regional and temporal variations between particulate matter (PM) mass concentration at the surface and column AOD over a wide region in the northern part of the Great North China Plain.« less

Cosmic ray modulation and turbulent interaction regions near 11 AU

NASA Technical Reports Server (NTRS)

Burlaga, L. F.; Mcdonald, F. B.; Goldstein, M. L.; Lazarus, A. J.

1985-01-01

When Voyager 2 was near 11 AU, the counting rate of nuclei approx 75 MeV/nucleon decreased during the interval from July, 1982 to November, 1982, and it increased thereafter until August, 1983. A decrease in cosmic ray flux was generally associated with the passage of an interaction region in which the magnetic field strength B was higher than that predicted by the spiral field model, B sub p. Several large enhancements in B/B sup p were associated with merged interaction regions which probably resulted from the interaction of two or more distinct flows. During the passage of interaction regions the cosmic ray intensity decreased at a rate proportional to (B/B sup p -1), and during the passage of rarefaction regions (where B/B sup p 1) the cosmic ray intensity increased at a constant rate. The general form of the cosmic ray intensity profile during this approx 13 month minicycle can be described by integrating these relations using the observed B(t). Latitudinal variations of the interaction regions and of the short-term cosmic ray variations were identified.

Observation of F region irregularities near a northern equatorial anomaly crest during solar minimum using ionosonde, GPS receiver, and satellites

NASA Astrophysics Data System (ADS)

Lee, C.-C.; Chen, W. S.; Chu, F. D.

2013-06-01

For solar minimum, the spread F, GPS phase fluctuations, and plasma bubbles near the crest of equatorial ionization anomaly (EIA) are simultaneously analyzed to investigate F region irregularities for the first time. The data were observed using the Chungli ionosonde, YMSM GPS receiver, and DMSP satellites during 1996. It is found that in the observed ionograms, the frequency spread F (FSF) usually comes after the range spread F (RSF) in a series of nighttime spread F events. This results in that the maximum occurrence of RSF appears before that of FSF in the nighttime variations in occurrence probabilities. Moreover, the seasonal variation for RSF is close to that for FSF. Both have a board maximum in the J-months and a secondary maximum in December. These indicate that RSF and FSF should be regarded as one type of spread F, which is the all spread F (ASF) in this study. Because the equatorial plasma bubbles occur infrequently during solar minimum, the F region irregularities forming ASF are not related to the equatorial spread F. On the other hand, the similarity in seasonal occurrence between ASF and medium-scale traveling ionospheric disturbances (MSTIDs) demonstrates that the F region irregularities near the EIA crest are mainly generated by the gradient drift instability driven by MSTIDs. The irregularities, generated by MSTIDs, mostly occur in the bottom side of the F region. Consequently, the events of significant GPS phase fluctuations and plasma bubble near the EIA crest are rare during 1996.

Observations of peculiar sporadic sodium structures and their relation with wind variations

NASA Astrophysics Data System (ADS)

Sridharan, S.; Prasanth, P. Vishnu; Kumar, Y. Bhavani; Ramkumar, Geetha; Sathishkumar, S.; Raghunath, K.

2009-04-01

Resonance lidar observations of sodium density in the upper mesosphere region over Gadanki (13.5°N, 79.2°E) rarely show complex structures with rapid enhancements of sodium density, completely different from normal sporadic sodium structures. The hourly averaged meteor radar zonal winds over Trivandrum (8.5°N, 76.5°E) show an eastward shear with altitude during the nights, when these events are formed. As suggested by Kane et al. [2001. Joint observations of sodium enhancements and field-aligned ionospheric irregularities. Geophysical Research Letters 28, 1375-1378], our observations show that the complex structures may be formed due to Kelvin-Helmholtz instability, which can occur in the region of strong wind shear.

Multi-Decadal Aerosol Variations from 1980 to 2009: A Perspective from Observations and a Global Model

NASA Technical Reports Server (NTRS)

Chin, Mian; Diehl, T.; Tan, Q.; Prospero, J. M.; Kahn, R. A.; Remer, L. A.; Yu, H.; Sayer, A. M.; Bian, H.; Geogdzhayev, I. V.;

Increased heat transfer to a cylindrical leading edge due to spanwise variations in the freestream velocity

NASA Technical Reports Server (NTRS)

Rigby, D. L.; Vanfossen, G. J.

1991-01-01

The present study numerically demonstrates how small spanwise variations in velocity upstream of a body can cause relatively large increases in the spanwise-averaged heat transfer to the leading edge. Vorticity introduced by spanwise variations, first decays as it drifts downstream, then amplifies in the stagnation region as a result of vortex stretching. This amplification can cause a periodic array of 3 D structures, similar to horseshoe vortices, to form. The numerical results indicate that, for the given wavelength, there is an amplitude threshold below which a structure does not form. A one-dimensional analysis, to predict the decay of vorticity in the absence of the body, in conjunction with the full numerical results indicated that the threshold is more accurately stated as minimum level of vorticity required in the leading edge region for a structure to form. It is possible, using the one-dimensional analysis, to compute an optimum wavelength in terms of the maximum vorticity reaching the leading edge region for given amplitude. A discussion is presented which relates experimentally observed trends to the trends of the present phenomena.

Region-specific associations between sex, social status, and oxytocin receptor density in the brains of eusocial rodents.

PubMed

Mooney, S J; Coen, C W; Holmes, M M; Beery, A K

2015-09-10

Naturally occurring variations in neuropeptide receptor distributions in the brain contribute to numerous mammalian social behaviors. In naked mole-rats, which live in large social groups and exhibit remarkable reproductive skew, colony-related social behaviors vary with reproductive status. Here we examined whether variation in social status is associated with variations in the location and/or density of oxytocin binding in this species. Autoradiography was performed to assess forebrain oxytocin receptor (OTR) densities in breeding and non-breeding naked mole-rats of both sexes. Overall, males exhibited higher OTR binding in the medial amygdala in comparison to females. While there were no main effects of reproductive status in any region, a sex difference in OTR binding in the nucleus accumbens was mediated by status. Specifically, breeding males tended to have more OTR binding than breeding females in the nucleus accumbens, while no sex difference was observed in subordinates. These effects suggest that oxytocin may act in a sex- and region-specific way that corresponds to reproductive status and associated social behaviors. Copyright © 2015 IBRO. Published by Elsevier Ltd. All rights reserved.

El Nino-Induced Tropical Ocean/Land Energy Exchange in MERRA-2 and M2AMIP

NASA Technical Reports Server (NTRS)

Bosilovich, Michael G.; Robertson, Franklin R.

2017-01-01

Studies have shown the correlation and connection of surface temperatures across the globe, ocean and land, related to Tropical SSTs especially El Nino. This climate variability greatly influences regional weather and hydroclimate extremes (e.g. drought and flood). In this paper, we evaluate the relationship of temperatures across the tropical oceans and continents in MERRA-2, and also in a newly developed MERRA-2 AMIP ensemble simulation (M2AMIP). M2AMIP uses the same model and spatial resolution as MERRA-2, producing the same output diagnostics over 10 ensemble members. Composite El Nino temperature data are compared with observations to evaluate the land/sea contrast, variations and phase relationship. The temperature variations are related to surface heat fluxes and the atmospheric temperatures and transport, to identify the processes that lead to the lagged redistribution of heat in the tropics and beyond. Discernable cloud, radiation and data assimilation changes accompany the onset of El Nino affecting continental regions through the progression to and following the peak values. While the model represents these variations in general, regional strengths and weaknesses can be identified.

Development and evaluation of a high-resolution reanalysis of the East Australian Current region using the Regional Ocean Modelling System (ROMS 3.4) and Incremental Strong-Constraint 4-Dimensional Variational (IS4D-Var) data assimilation

NASA Astrophysics Data System (ADS)

Kerry, Colette; Powell, Brian; Roughan, Moninya; Oke, Peter

2016-10-01

As with other Western Boundary Currents globally, the East Australian Current (EAC) is highly variable making it a challenge to model and predict. For the EAC region, we combine a high-resolution state-of-the-art numerical ocean model with a variety of traditional and newly available observations using an advanced variational data assimilation scheme. The numerical model is configured using the Regional Ocean Modelling System (ROMS 3.4) and takes boundary forcing from the BlueLink ReANalysis (BRAN3). For the data assimilation, we use an Incremental Strong-Constraint 4-Dimensional Variational (IS4D-Var) scheme, which uses the model dynamics to perturb the initial conditions, atmospheric forcing, and boundary conditions, such that the modelled ocean state better fits and is in balance with the observations. This paper describes the data assimilative model configuration that achieves a significant reduction of the difference between the modelled solution and the observations to give a dynamically consistent "best estimate" of the ocean state over a 2-year period. The reanalysis is shown to represent both assimilated and non-assimilated observations well. It achieves mean spatially averaged root mean squared (rms) residuals with the observations of 7.6 cm for sea surface height (SSH) and 0.4 °C for sea surface temperature (SST) over the assimilation period. The time-mean rms residual for subsurface temperature measured by Argo floats is a maximum of 0.9 °C between water depths of 100 and 300 m and smaller throughout the rest of the water column. Velocities at several offshore and continental shelf moorings are well represented in the reanalysis with complex correlations between 0.8 and 1 for all observations in the upper 500 m. Surface radial velocities from a high-frequency radar array are assimilated and the reanalysis provides surface velocity estimates with complex correlations with observed velocities of 0.8-1 across the radar footprint. A comparison with independent (non-assimilated) shipboard conductivity temperature depth (CTD) cast observations shows a marked improvement in the representation of the subsurface ocean in the reanalysis, with the rms residual in potential density reduced to about half of the residual with the free-running model in the upper eddy-influenced part of the water column. This shows that information is successfully propagated from observed variables to unobserved regions as the assimilation system uses the model dynamics to adjust the model state estimate. This is the first study to generate a reanalysis of the region at such a high resolution, making use of an unprecedented observational data set and using an assimilation method that uses the time-evolving model physics to adjust the model in a dynamically consistent way. As such, the reanalysis potentially represents a marked improvement in our ability to capture important circulation dynamics in the EAC. The reanalysis is being used to study EAC dynamics, observation impact in state-estimation, and as forcing for a variety of downscaling studies.

Sensitivity of Gravity Wave Fluxes to Interannual Variations in Tropical Convection and Zonal Wind.

PubMed

Alexander, M Joan; Ortland, David A; Grimsdell, Alison W; Kim, Ji-Eun

2017-09-01

Using an idealized model framework with high-frequency tropical latent heating variability derived from global satellite observations of precipitation and clouds, the authors examine the properties and effects of gravity waves in the lower stratosphere, contrasting conditions in an El Niño year and a La Niña year. The model generates a broad spectrum of tropical waves including planetary-scale waves through mesoscale gravity waves. The authors compare modeled monthly mean regional variations in wind and temperature with reanalyses and validate the modeled gravity waves using satellite- and balloon-based estimates of gravity wave momentum flux. Some interesting changes in the gravity spectrum of momentum flux are found in the model, which are discussed in terms of the interannual variations in clouds, precipitation, and large-scale winds. While regional variations in clouds, precipitation, and winds are dramatic, the mean gravity wave zonal momentum fluxes entering the stratosphere differ by only 11%. The modeled intermittency in gravity wave momentum flux is shown to be very realistic compared to observations, and the largest-amplitude waves are related to significant gravity wave drag forces in the lowermost stratosphere. This strong intermittency is generally absent or weak in climate models because of deficiencies in parameterizations of gravity wave intermittency. These results suggest a way forward to improve model representations of the lowermost stratospheric quasi-biennial oscillation winds and teleconnections.

Deriving mass balance and calving variations from reanalysis data and sparse observations, Glaciar San Rafael, northern Patagonia, 1950-2005

NASA Astrophysics Data System (ADS)

Koppes, M.; Conway, H.; Rasmussen, L. A.; Chernos, M.

2011-04-01

Mass balance variations of Glaciar San Rafael, the most equatorial tidewater glacier in the North Patagonian Icefield, are reconstructed over the period 1950-2005 using NCEP-NCAR reanalysis climate data together with sparse, local historical observations of air temperature, precipitation, accumulation, ablation, thinning, calving, and glacier retreat. The combined observations over the past 50 yr indicate that Glaciar San Rafael has thinned and retreated since 1959, with a total mass loss of ~22 km3 of ice equivalent. Over that period, except for a short period of cooling from 1998-2003, the climate has become progressively warmer and drier, which has resulted primarily in pervasive thinning of the glacier surface and a decrease in calving rates, with only minor acceleration in retreat of the terminus. A comparison of calving fluxes derived from the mass balance variations and from theoretical calving and sliding laws suggest that calving rates are inversely correlated with retreat rates, and that terminus geometry is more important than changes in balance fluxes to the terminus in driving calving dynamics. For Glaciar San Rafael, regional climate warming has not yet resulted in the significant changes in glacier length seen in other calving glaciers in the region, emphasizing the complex dynamics between climate inputs, topographic constraints and glacier response in calving glacier systems.

Diurnal variation of surface ozone in mountainous areas: Case study of Mt. Huang, East China.

PubMed

Zhang, Lei; Jin, Lianji; Zhao, Tianliang; Yin, Yan; Zhu, Bin; Shan, Yunpeng; Guo, Xiaomei; Tan, Chenghao; Gao, Jinhui; Wang, Haoliang

2015-12-15

To explore the variations in atmospheric environment over mountainous areas, measurements were made from an intensive field observation at the summit of Mt. Huang (30.13°N, 118.15°E, 1841m above sea level), a rural site located in East China, from June to August 2011. The measurements revealed a diurnal change of surface O3 with low concentrations during the daytime and high concentrations during the nighttime. The causes of diurnal O3 variations over the mountain peak in East China were investigated by using a fairly comprehensive WRF-Chem and HYSPLIT4 modeling approach with observational analysis. By varying model inputs and comparing the results to a baseline modeling and actual air quality observations, it is found that nearby ozone urban/anthropogenic emission sources were contributing to a nighttime increase in mountaintop ozone levels due to a regional transport lag and residual layer effects. Positive correlation of measured O3 and CO concentrations suggested that O3 was associated with anthropogenic emissions. Sensitivity modeling experiments indicated that local anthropogenic emissions had little impact on the diurnal pattern of O3. The diurnal pattern of O3 was mainly influenced by regional O3 transport from the surrounding urban areas located 100-150km away from the summit, with a lag time of 10h for transport. Copyright © 2015 Elsevier B.V. All rights reserved.

Examination of Satellite and Model Reanalysis Precipitation with Climate Oscillations

NASA Astrophysics Data System (ADS)

Donato, T. F.; Houser, P. R.

2016-12-01

The purpose of this study is to examine the efficacy of satellite and model reanalysis precipitation with climate oscillations. Specifically, we examine and compare the relationship between the Global Precipitation Climate Project (GPCP) with Modern-Era Retrospective Analysis for Research and Application, Version 2 (MERRA-2) in regards to four climate indices: The North Atlantic Oscillation, Southern Oscillation Index, the Southern Annular Mode and Solar Activity. This analysis covers a 35-year observation period from 1980 through 2015. We ask two questions: How is global and regional precipitation changing over the observation period, and how are global and regional variations in precipitation related to global climate variation? We explore and compare global and regional precipitation trends between the two data sets. To do this, we constructed a total of 56 Regions of Interest (ROI). Nineteen of the ROIs were focused on geographic regions including continents, ocean basins, and marginal seas. Twelve ROIs examine hemispheric processes. The remaining 26 regions are derived from spatial-temporal classification analysis of GPCP data over a ten-year period (2001-2010). These regions include the primary wet and dry monsoon regions, regions influenced by western boundary currents, and orography. We investigate and interpret the monthly, seasonal and yearly global and regional response to the selected climate indices. Initial results indicate that no correlation exist between the GPCP data and Merra-2 data. Preliminary qualitative assessment between GCPC and solar activity suggest a possible relationship in intra-annual variability. This work is performed under the State of the Global Water and Energy Cycle (SWEC) project, a NASA-sponsored program in support of NASA's Energy and Water cycle Study (NEWS).

Abundance Variations and Flows in Plage Regions Observed with CDS/SOHO

NASA Astrophysics Data System (ADS)

Rank, G.; Bagalá, L. G.; Czaykowska, A.; Haerendel, G.

1999-10-01

We present results from CDS/SOHO observations of the spotless active region NOAA-8208, obtained on 28th April 1998 near disk center. MDI images show a bipolar magnetic configuration. The regions of enhanced He I emission correspond to the areas with strong magnetic flux and also with bright plage areas seen in Ca II and H-alpha images. A high correlation is found between intensity maps of the transition region lines He I (logTmax = 4.3), O III (logTmax = 5.0), and O V (logTmax = 5.4). The line-of-sight velocities of He I reveal a strong downflow in the plage areas. Further, the line-of-sight velocities of He I, O III, and O V are well correlated, showing that the downflow pattern exists up to temperatures of about 0.25 MK. At higher temperatures (Mg VIII at logTmax = 5.8) this flow is not detected, suggesting that material streams into the plage region from sideways in the high transition region. Maps of the electron density in the transition region have been constructed from several line ratios yielding densities of about 9.0 cm-3 in the plage regions, about dex 0.5 cm-3 higher compared to the surrounding. To study the spatial variation of the first ionization potential (FIP) effect, the abundance ratio has been mapped for the ion ratio MgVI/NeVI. The ratio is highly variable on spatial scales down to a few arcsec from photospheric values to enhancements of a factor of 10. The strongest FIP enhancements are not correlated with transition region line emission, but are found outside of the plage regions. Some areas of strong FIP enhancement appear stretched and elongated, suggesting that the material is confined in loop-like structures.

Observations at mercury encounter by the plasma science experiment on mariner 10.

PubMed

Ogilvie, K W; Scudder, J D; Hartle, R E; Siscoe, G L; Bridge, H S; Lazarus, A J; Asbridge, J R; Bame, S J; Yeates, C M

1974-07-12

A fully developed bow shock and magnetosheath were observed near Mercury, providing unambiguous evidence for a strong interaction between Mercury and the solar wind. Inside the sheath there is a distinct region analogous to the magnetosphere or magnetotail of Earth, populated by electrons with lower density and higher temperature than the electrons observed in the solar wind or magnetosheath. At the time of encounter, conditions were such that a perpendicular shock was observed on the inbound leg and a parallel shock was observed on the outbound leg of the trajectory, and energetic plasma electron events were detected upstream from the outbound shock crossing. The interaction is most likely not atmospheric, but the data clearly indicate that the obstacle to solar wind flow is magnetic, either intrinsic or induced. The particle fluxes and energy spectra showed large variations while the spacecraft was inside the magnetosphere, and these variations could be either spatial or temporal.

Temporal variation and source identification of black carbon at Lin'an and Longfengshan regional background stations in China

NASA Astrophysics Data System (ADS)

Cheng, Siyang; Wang, Yaqiang; An, Xingqin

2017-12-01

Black carbon (BC) is a component of fine particulate matter (PM2.5), associated with climate, weather, air quality, and people's health. However, studies on temporal variation of atmospheric BC concentration at background stations in China and its source area identification are lacking. In this paper, we use 2-yr BC observations from two background stations, Lin'an (LAN) and Longfengshan (LFS), to perform the investigation. The results show that the mean diurnal variation of BC has two significant peaks at LAN while different characteristics are found in the BC variation at LFS, which are probably caused by the difference in emission source contributions. Seasonal variation of monthly BC shows double peaks at LAN but a single peak at LFS. The annual mean concentrations of BC at LAN and LFS decrease by 1.63 and 0.26 μg m-3 from 2009 to 2010, respectively. The annual background concentration of BC at LAN is twice higher than that at LFS. The major source of the LAN BC is industrial emission while the source of the LFS BC is residential emission. Based on transport climatology on a 7-day timescale, LAN and LFS stations are sensitive to surface emissions respectively in belt or approximately circular area, which are dominated by summer monsoon or colder land air flows in Northwest China. In addition, we statistically analyze the BC source regions by using BC observation and FLEXible PARTicle dispersion model (FLEXPART) simulation. In summer, the source regions of BC are distributed in the northwest and south of LAN and the southwest of LFS. Low BC concentration is closely related to air mass from the sea. In winter, the source regions of BC are concentrated in the west and south of LAN and the northeast of the threshold area of s tot at LFS. The cold air mass in the northwest plays an important role in the purification of atmospheric BC. On a yearly scale, sources of BC are approximately from five provinces in the northwest/southeast of LAN and the west of LFS. These findings are helpful in reducing BC emission and controlling air pollution.

Long-term nadir observations of the O2 dayglow by SPICAM IR

NASA Astrophysics Data System (ADS)

Guslyakova, S.; Fedorova, A.; Lefèvre, F.; Korablev, O.; Montmessin, F.; Trokhimovskiy, A.; Bertaux, J. L.

2016-03-01

The O2(a1Δg) dayglow at the 1.27 μm band on Mars is produced by the solar UV photolysis of ozone and quenched in collisions with CO2. The SPICAM IR instrument onboard the Mars Express orbiter observes the O2(a1Δg) emission in the Martian atmosphere starting from 2004. We present a continuous set of O2(a1Δg) dayglow intensities from nadir measurements for six Martian years from the end of MY26 to MY32. Maximum values of the O2(a1Δg) dayglow reaching 31 MR were observed in early northern and southern springs in both hemispheres. Near the equator a spring maximum of 5-8 MR was observed for all years. The emission intensity is minimum in the Southern hemisphere in summer with values of 1-2 MR. Comparison of the data with GCM simulations and simultaneous ozone measurements by SPICAM UV allows to derive the quenching rate (k) of the excited O2 molecules by CO2, k=0.73×10-20 cm3 molecules-1 s-1. The interannual variation of the O2 emission has been studied after applying correction for the local time. The O2(a1Δg) seasonal pattern is rather stable with average year-to-year relative variation of about 21%, in accord with interannual variations detected from the ground (Krasnopolsky, 2013). The most variable region corresponds to northern and southern spring at middle latitudes, coinciding with sublimation of the polar caps in both hemispheres. Southern latitudes also show a high year-to-year variability in summer (Ls=270-330°) relating to the dust activity in this region. A comparison with simultaneous SPICAM water vapor observations shows that the O2(a1Δg) dayglow depends on the water vapor variations, and clearly confirms their anti-correlation, excepting the case of low and middle latitudes in the aphelion period.

Identifying water mass depletion in northern Iraq observed by GRACE

NASA Astrophysics Data System (ADS)

Mulder, G.; Olsthoorn, T. N.; Al-Manmi, D. A. M. A.; Schrama, E. J. O.; Smidt, E. H.

2015-03-01

Observations acquired by Gravity Recovery And Climate Experiment (GRACE) mission indicate a mass loss of 146 ± 6 mm equivalent water height (EWH) in northern Iraq between 2007 and 2009. These data are used as an independent validation of lake mass variations and a rainfall-runoff model, which is based on local geology and climate conditions. Model inputs are precipitation from Tropical Rainfall Measurement Mission (TRMM) observations, and climatic parameters from Global Land Data Assimilation Systems (GLDAS) model parameters. The model is calibrated with observed river discharge and includes a representation of the karstified aquifers in the region to improve model realism. Lake mass variations were derived from Moderate Resolution Imaging Spectroradiometer (MODIS) in combination with satellite altimetry and some in situ data. Our rainfall-runoff model confirms that northern Iraq suffered a drought between 2007 and 2009 and captures the annual cycle and longer trend of the observed GRACE data. The total mass depletion seen by GRACE between 2007 and 2009 is mainly explained by a lake mass depletion of 75 ± 3 mm EWH and a natural groundwater depletion of 39 ± 8 mm EWH. Our findings indicate that anthropogenic groundwater extraction has a minor influence in this region, while a decline in lake mass and natural depletion of groundwater play a key role.

Standardized deceased donor kidney donation rates in the UK reveal marked regional variation and highlight the potential for increasing kidney donation: a prospective cohort study†

PubMed Central

Summers, D. M.; Johnson, R. J.; Hudson, A. J.; Collett, D.; Murphy, P.; Watson, C. J. E.; Neuberger, J. M.; Bradley, J. A.

2014-01-01

Background The UK has implemented a national strategy for organ donation that includes a centrally coordinated network of specialist nurses in organ donation embedded in all intensive care units and a national organ retrieval service for deceased organ donors. We aimed to determine whether despite the national approach to donation there is significant regional variation in deceased donor kidney donation rates. Methods The UK prospective audit of deaths in critical care was analysed for a cohort of patients who died in critical care between April 2010 and December 2011. Multivariate logistic regression was used to identify the factors associated with kidney donation. The logistic regression model was then used to produce risk-adjusted funnel plots describing the regional variation in donation rates. Results Of the 27 482 patients who died in a critical care setting, 1528 (5.5%) became kidney donors. Factors found to influence donation rates significantly were: type of critical care [e.g. neurointensive vs general intensive care: OR 1.53, 95% confidence interval (CI) 1.34–1.75, P<0.0001], patient ethnicity (e.g. ‘Asian’ vs ‘white’: OR 0.17, 95% CI 0.11–0.26, P<0.0001), age (e.g. age >69 vs age 18–39 yr: OR 0.2, 0.15–0.25, P<0.0001), and cause of death [e.g. ‘other’ (excluding ‘stroke’ and ‘trauma’) vs ‘trauma’: OR 0.04, 95% CI 0.03–0.05, P<0.0001]. Despite correction for these variables, kidney donation rates for the 20 UK kidney donor regions showed marked variation. The overall standardized donation rate ranged from 3.2 to 7.5%. Four regions had donation rates of >2 standard deviations (sd) from the mean (two below and two above). Regional variation was most marked for donation after circulatory death (DCD) kidney donors with 9 of the 20 regions demonstrating donation rates of >2 sd from the mean (5 below and 4 above). Conclusions The marked regional variation in kidney donation rates observed in this cohort after adjustment for factors strongly associated with donation rates suggests that there is considerable scope for further increasing kidney donation rates in the UK, particularly DCD. PMID:24335581

Simulated sensitivity of seasonal ozone exposure in the Great Lakes region to changes in anthropogenic emissions in the presence of interannual variability

Treesearch

Jerome D. Fast; Warren E. Heilman

2005-01-01

A coupled meteorological and chemical modeling system with a 12-km horizontal grid spacing was used to simulate the evolution of ozone over the Great Lakes region between May and September of 1999 and 2001. The overall temporal and spatial variations in hourly ozone concentrations and ozone exposure from control simulations agreed reasonably well with the observations...

Quantitative Measures of Immersion in Cloud and the Biogeography of Cloud Forests

NASA Technical Reports Server (NTRS)

Lawton, R. O.; Nair, U. S.; Ray, D.; Regmi, A.; Pounds, J. A.; Welch, R. M.

2010-01-01

Sites described as tropical montane cloud forests differ greatly, in part because observers tend to differ in their opinion as to what constitutes frequent and prolonged immersion in cloud. This definitional difficulty interferes with hydrologic analyses, assessments of environmental impacts on ecosystems, and biogeographical analyses of cloud forest communities and species. Quantitative measurements of cloud immersion can be obtained on site, but the observations are necessarily spatially limited, although well-placed observers can examine 10 50 km of a mountain range under rainless conditions. Regional analyses, however, require observations at a broader scale. This chapter discusses remote sensing and modeling approaches that can provide quantitative measures of the spatiotemporal patterns of cloud cover and cloud immersion in tropical mountain ranges. These approaches integrate remote sensing tools of various spatial resolutions and frequencies of observation, digital elevation models, regional atmospheric models, and ground-based observations to provide measures of cloud cover, cloud base height, and the intersection of cloud and terrain. This combined approach was applied to the Monteverde region of northern Costa Rica to illustrate how the proportion of time the forest is immersed in cloud may vary spatially and temporally. The observed spatial variation was largely due to patterns of airflow over the mountains. The temporal variation reflected the diurnal rise and fall of the orographic cloud base, which was influenced in turn by synoptic weather conditions, the seasonal movement of the Intertropical Convergence Zone and the north-easterly trade winds. Knowledge of the proportion of the time that sites are immersed in clouds should facilitate ecological comparisons and biogeographical analyses, as well as land use planning and hydrologic assessments in areas where intensive on-site work is not feasible.

Data Assimilation in a Solar Dynamo Model Using Ensemble Kalman Filters: Sensitivity and Robustness in Reconstruction of Meridional Flow Speed

NASA Astrophysics Data System (ADS)

Dikpati, Mausumi; Anderson, Jeffrey L.; Mitra, Dhrubaditya

2016-09-01

We implement an Ensemble Kalman Filter procedure using the Data Assimilation Research Testbed for assimilating “synthetic” meridional flow-speed data in a Babcock-Leighton-type flux-transport solar dynamo model. By performing several “observing system simulation experiments,” we reconstruct time variation in meridional flow speed and analyze sensitivity and robustness of reconstruction. Using 192 ensemble members including 10 observations, each with 4% error, we find that flow speed is reconstructed best if observations of near-surface poloidal fields from low latitudes and tachocline toroidal fields from midlatitudes are assimilated. If observations include a mixture of poloidal and toroidal fields from different latitude locations, reconstruction is reasonably good for ≤slant 40 % error in low-latitude data, even if observational error in polar region data becomes 200%, but deteriorates when observational error increases in low- and midlatitude data. Solar polar region observations are known to contain larger errors than those in low latitudes; our forward operator (a flux-transport dynamo model here) can sustain larger errors in polar region data, but is more sensitive to errors in low-latitude data. An optimal reconstruction is obtained if an assimilation interval of 15 days is used; 10- and 20-day assimilation intervals also give reasonably good results. Assimilation intervals \\lt 5 days do not produce faithful reconstructions of flow speed, because the system requires a minimum time to develop dynamics to respond to flow variations. Reconstruction also deteriorates if an assimilation interval \\gt 45 days is used, because the system’s inherent memory interferes with its short-term dynamics during a substantially long run without updating.

Characterization of Equine Infectious Anemia Virus Long Terminal Repeat Quasispecies In Vitro and In Vivo

PubMed Central

Wang, Xue-Feng; Liu, Qiang; Wang, Yu-Hong; Wang, Shuai; Chen, Jie; Lin, Yue-Zhi; Ma, Jian; Zhou, Jian-Hua

2018-01-01

ABSTRACT The equine infectious anemia virus (EIAV) attenuated vaccine was developed by long-term passaging of a field-isolated virulent strain in cross-species hosts, followed by successive cultivation in cells in vitro. To explore the molecular mechanism underlying the evolution of the EIAV attenuated vaccine, a systematic study focusing on long-terminal-repeat (LTR) variation in numerous virus strains ranging from virulent EIAV to attenuated EIAV was performed over time both in vitro and in vivo. Two hypervariable regions were identified within the U3 region in the enhancer region (EHR) and the negative regulatory element (NRE) and within the R region in the transcription start site (TSS) and the Tat-activating region (TAR). Among these sites, variation in the U3 region resulted in the formation of additional transcription factor binding sites; this variation of the in vitro-adapted strains was consistent with the loss of pathogenicity. Notably, the same LTR variation pattern was observed both in vitro and in vivo. Generally, the LTR variation in both the attenuated virus and the virulent strain fluctuated over time in vivo. Interestingly, the attenuated-virus-specific LTR variation was also detected in horses infected with the virulent strain, supporting the hypothesis that the evolution of an attenuated virus might have involved branching from EIAV quasispecies. This hypothesis was verified by phylogenetic analysis. The present systematic study examining the molecular evolution of attenuated EIAV from EIAV quasispecies may provide an informative model reflecting the evolution of similar lentiviruses. IMPORTANCE The attenuated EIAV vaccine was the first lentiviral vaccine used to successfully control for equine infectious anemia in China. This vaccine provides an important reference for studying the relationship between EIAV gene variation and changes in biological characteristics. Importantly, the vaccine provides a model for the investigation of lentiviral quasispecies evolution. This study followed the “natural” development of the attenuated EIAV vaccine by use of a systematic analysis of LTR evolution in vitro and in vivo. The results revealed that the increase in LTR variation with passaging was accompanied by a decrease in virulence, which indicated that LTR variability might parallel the attenuation of virulence. Interestingly, the attenuated-virus-specific LTR variation was also detected in virulent-strain-infected horses, a finding consistent with those of previous investigations of gp90 and S2 evolution. Therefore, we present a hypothesis that the evolution of the attenuated virus may involve branching from EIAV quasispecies present in vivo. PMID:29386282

Hydroclimate variations in central and monsoonal Asia over the past 700 years.

PubMed

Fang, Keyan; Chen, Fahu; Sen, Asok K; Davi, Nicole; Huang, Wei; Li, Jinbao; Seppä, Heikki

2014-01-01

Hydroclimate variations since 1300 in central and monsoonal Asia and their interplay on interannual and interdecadal timescales are investigated using the tree-ring based Palmer Drought Severity Index (PDSI) reconstructions. Both the interannual and interdecadal variations in both regions are closely to the Pacific Decadal Oscillation (PDO). On interannual timescale, the most robust correlations are observed between PDO and hydroclimate in central Asia. Interannual hydroclimate variations in central Asia are more significant during the warm periods with high solar irradiance, which is likely due to the enhanced variability of the eastern tropical Pacific Ocean, the high-frequency component of PDO, during the warm periods. We observe that the periods with significant interdecadal hydroclimate changes in central Asia often correspond to periods without significant interdecadal variability in monsoonal Asia, particularly before the 19th century. The PDO-hydroclimate relationships appear to be bridged by the atmospheric circulation between central North Pacific Ocean and Tibetan Plateau, a key area of PDO. While, in some periods the atmospheric circulation between central North Pacific Ocean and monsoonal Asia may lead to significant interdecadal hydroclimate variations in monsoonal Asia.

Hydroclimate Variations in Central and Monsoonal Asia over the Past 700 Years

PubMed Central

Fang, Keyan; Chen, Fahu; Sen, Asok K.; Davi, Nicole; Huang, Wei; Li, Jinbao; Seppä, Heikki

2014-01-01

Hydroclimate variations since 1300 in central and monsoonal Asia and their interplay on interannual and interdecadal timescales are investigated using the tree-ring based Palmer Drought Severity Index (PDSI) reconstructions. Both the interannual and interdecadal variations in both regions are closely to the Pacific Decadal Oscillation (PDO). On interannual timescale, the most robust correlations are observed between PDO and hydroclimate in central Asia. Interannual hydroclimate variations in central Asia are more significant during the warm periods with high solar irradiance, which is likely due to the enhanced variability of the eastern tropical Pacific Ocean, the high-frequency component of PDO, during the warm periods. We observe that the periods with significant interdecadal hydroclimate changes in central Asia often correspond to periods without significant interdecadal variability in monsoonal Asia, particularly before the 19th century. The PDO-hydroclimate relationships appear to be bridged by the atmospheric circulation between central North Pacific Ocean and Tibetan Plateau, a key area of PDO. While, in some periods the atmospheric circulation between central North Pacific Ocean and monsoonal Asia may lead to significant interdecadal hydroclimate variations in monsoonal Asia. PMID:25119567

Eastern equatorial Pacific Ocean T-S variations with El Nino

NASA Technical Reports Server (NTRS)

Wang, O.; Fukumori, I.; Lee, T.; Johnson, G. C.

2004-01-01

Temperature-Salinity (T-S) relationship variability in the pycnocline of the eastern equatorial Pacific Ocean (NINO3 region, 5 degrees S ??degrees N, 150 degrees W ?? degrees W) over the last two decades is investigated using observational data and model simulation.

Resolving uncertainties in the urban air quality, climate, and vegetation nexus through citizen science, satellite imagery, and atmospheric modeling

NASA Astrophysics Data System (ADS)

Jenerette, D.; Wang, J.; Chandler, M.; Ripplinger, J.; Koutzoukis, S.; Ge, C.; Castro Garcia, L.; Kucera, D.; Liu, X.

2017-12-01

Large uncertainties remain in identifying the distribution of urban air quality and temperature risks across neighborhood to regional scales. Nevertheless, many cities are actively expanding vegetation with an expectation to moderate both climate and air quality risks. We address these uncertainties through an integrated analysis of satellite data, atmospheric modeling, and in-situ environmental sensor networks maintained by citizen scientists. During the summer of 2017 we deployed neighborhood-scale networks of air temperature and ozone sensors through three campaigns across urbanized southern California. During each five-week campaign we deployed six sensor nodes that included an EPA federal equivalent method ozone sensor and a suite of meteorological sensors. Each node was further embedded in a network of 100 air temperature sensors that combined a randomized design developed by the research team and a design co-created by citizen scientists. Between 20 and 60 citizen scientists were recruited for each campaign, with local partners supporting outreach and training to ensure consistent deployment and data gathering. We observed substantial variation in both temperature and ozone concentrations at scales less than 4km, whole city, and the broader southern California region. At the whole city scale the average spatial variation with our ozone sensor network just for city of Long Beach was 26% of the mean, while corresponding variation in air temperature was only 7% of the mean. These findings contrast with atmospheric model estimates of variation at the regional scale of 11% and 1%. Our results show the magnitude of fine-scale variation underestimated by current models and may also suggest scaling functions that can connect neighborhood and regional variation in both ozone and temperature risks in southern California. By engaging citizen science with high quality sensors, satellite data, and real-time forecasting, our results help identify magnitudes of climate and air quality risk variation across scales and can guide individual decisions and urban policies surrounding vegetation to moderate these risks.

National Trends and Geographic Variation in Bilateral Internal Mammary Artery Use in the United States.

PubMed

Iribarne, Alexander; Goodney, Philip P; Flores, Alyssa M; DeSimone, Joseph; DiScipio, Anthony W; Austin, Andrea; McCullough, Jock N

2017-12-01

The goal of this study was to characterize the adoption rate and regional variation in bilateral internal mammary artery (BIMA) use during coronary artery bypass grafting (CABG) in the United States. Observational study of 100% sample of fee-for-service Medicare beneficiaries aged 65 years or older, continuously enrolled in Parts A and B from 2009 to 2014 (n = 162,860,439). Rates of beneficiaries receiving a BIMA versus single internal mammary artery (SIMA) during CABG are expressed per 1,000 beneficiaries and aggregated by Hospital Referral Region (HRR). An HRR is a validated unit for quantifying regional variation in health care. The absolute national rate of BIMA use declined during the study period from 0.21 claims per 1,000 beneficiaries in 2009 to 0.13 in 2014 (p < 0.001). When indexed to overall CABG volume, no change was seen in the frequency of BIMA use over time (p = 0.883). SIMA use ranged from 1.3 to 8.5 claims per 1,000 Medicare beneficiaries, whereas BIMA use ranged from 0 to 1.5 (p < 0.001). A significant correlation was found between regional volume of SIMA use and likelihood of BIMA use (correlation coefficient 0.673, p < 0.001). Although both SIMA and BIMA use correlated with regional volume of diagnostic cardiac catheterization, the correlation was stronger for SIMA use (correlation coefficient 0.962 versus 0.682, p < 0.001). Over the past 5 years, no growth was seen in BIMA use among Medicare beneficiaries, and the frequency of BIMA use during CABG remained low. There was significant regional variation in BIMA use, however, which demonstrates opportunity for continued growth of BIMA grafting. Copyright © 2017 The Society of Thoracic Surgeons. Published by Elsevier Inc. All rights reserved.

Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants.

PubMed

Iso-Touru, T; Sahana, G; Guldbrandtsen, B; Lund, M S; Vilkki, J

2016-03-22

The Nordic Red Cattle consisting of three different populations from Finland, Sweden and Denmark are under a joint breeding value estimation system. The long history of recording of production and health traits offers a great opportunity to study production traits and identify causal variants behind them. In this study, we used whole genome sequence level data from 4280 progeny tested Nordic Red Cattle bulls to scan the genome for loci affecting milk, fat and protein yields. Using a genome-wise significance threshold, regions on Bos taurus chromosomes 5, 14, 23, 25 and 26 were associated with fat yield. Regions on chromosomes 5, 14, 16, 19, 20 and 25 were associated with milk yield and chromosomes 5, 14 and 25 had regions associated with protein yield. Significantly associated variations were found in 227 genes for fat yield, 72 genes for milk yield and 30 genes for protein yield. Ingenuity Pathway Analysis was used to identify networks connecting these genes displaying significant hits. When compared to previously mapped genomic regions associated with fertility, significantly associated variations were found in 5 genes common for fat yield and fertility, thus linking these two traits via biological networks. This is the first time when whole genome sequence data is utilized to study genomic regions affecting milk production in the Nordic Red Cattle population. Sequence level data offers the possibility to study quantitative traits in detail but still cannot unambiguously reveal which of the associated variations is causative. Linkage disequilibrium creates difficulties to pinpoint the causative genes and variations. One solution to overcome these difficulties is the identification of the functional gene networks and pathways to reveal important interacting genes as candidates for the observed effects. This information on target genomic regions may be exploited to improve genomic prediction.

Probing Mantle Heterogeneity Across Spatial Scales

NASA Astrophysics Data System (ADS)

Hariharan, A.; Moulik, P.; Lekic, V.

2017-12-01

Inferences of mantle heterogeneity in terms of temperature, composition, grain size, melt and crystal structure may vary across local, regional and global scales. Probing these scale-dependent effects require quantitative comparisons and reconciliation of tomographic models that vary in their regional scope, parameterization, regularization and observational constraints. While a range of techniques like radial correlation functions and spherical harmonic analyses have revealed global features like the dominance of long-wavelength variations in mantle heterogeneity, they have limited applicability for specific regions of interest like subduction zones and continental cratons. Moreover, issues like discrepant 1-D reference Earth models and related baseline corrections have impeded the reconciliation of heterogeneity between various regional and global models. We implement a new wavelet-based approach that allows for structure to be filtered simultaneously in both the spectral and spatial domain, allowing us to characterize heterogeneity on a range of scales and in different geographical regions. Our algorithm extends a recent method that expanded lateral variations into the wavelet domain constructed on a cubed sphere. The isolation of reference velocities in the wavelet scaling function facilitates comparisons between models constructed with arbitrary 1-D reference Earth models. The wavelet transformation allows us to quantify the scale-dependent consistency between tomographic models in a region of interest and investigate the fits to data afforded by heterogeneity at various dominant wavelengths. We find substantial and spatially varying differences in the spectrum of heterogeneity between two representative global Vp models constructed using different data and methodologies. Applying the orthonormality of the wavelet expansion, we isolate detailed variations in velocity from models and evaluate additional fits to data afforded by adding such complexities to long-wavelength variations. Our method provides a way to probe and evaluate localized features in a multi-scale description of mantle heterogeneity.

Photoluminescence due to early stage of oxygen precipitation in multicrystalline Si for solar cells

NASA Astrophysics Data System (ADS)

Higuchi, Fumito; Tajima, Michio; Ogura, Atsushi

2017-07-01

To analyze the early stage of oxygen precipitation in n-type multicrytalline Si, the spectral change of photoluminescence (PL) induced by thermal treatment at 450-650 °C was investigated in relation to the changes in excess donor and interstitial oxygen concentrations. We observed the characteristic PL bands in the near-band-edge region and sharp lines in the deep-level region in correspondence with the generation of thermal donors and new donors. The observed PL spectral variation is essentially the same as that in Czochralski-grown Si annealed at 450-650 °C.

Comparison of water vapor from observations and models in the Asian Monsoon UTLS region

NASA Astrophysics Data System (ADS)

Singer, C. E.; Clouser, B.; Gaeta, D. C.; Moyer, E. J.

2017-12-01

As part of the StratoClim campaign in July/August 2017, the Chicago Water Isotope Spectrometer (ChiWIS) made water vapor measurements from the mid-troposphere through the lower stratosphere (to 21 km altitude). We compare in-situ measurements with remote sensing observations and model projections both to validate measurements and to evalute the added value of high-precision in-situ sampling. Preliminary results and comparison with other StratoClim tracer measurements suggest that the UTLS region is highly structured, beyond what models or satellite instruments can capture, and that ChiWIS accurately captures these variations.

Rare intronic variants of TCF7L2 arising by selective sweeps in an indigenous population from Mexico.

PubMed

Acosta, Jose Luis; Hernández-Mondragón, Alma Cristal; Correa-Acosta, Laura Carolina; Cazañas-Padilla, Sandra Nathaly; Chávez-Florencio, Berenice; Ramírez-Vega, Elvia Yamilet; Monge-Cázares, Tulia; Aguilar-Salinas, Carlos A; Tusié-Luna, Teresa; Del Bosque-Plata, Laura

2016-05-26

Genetic variations of the TCF7L2 gene are associated with the development of Type 2 diabetes (T2D). The associated mutations have demonstrated an adaptive role in some human populations, but no studies have determined the impact of evolutionary forces on genetic diversity in indigenous populations from Mexico. Here, we sequenced and analyzed the variation of the TCF7L2 gene in three Amerindian populations and compared the results with whole-exon-sequencing of Mestizo populations from Sigma and the 1000 Genomes Project to assess the roles of selection and recombination in diversity. The diversity in the indigenous populations was biased to intronic regions. Most of the variation was low frequency. Only mutations rs77961654 and rs61724286 were located on exon 15. We did not observe variation in intronic region 4-6 in any of the three indigenous populations. In addition, we identified peaks of selective sweeps in the mestizo samples from the Sigma Project within this region. By replicating the analysis of association with T2D between case-controls from the Sigma Project, we determined that T2D was most highly associated with the rs7903146 risk allele and to a lesser extent with the other six variants. All associated markers were located in intronic region 4-6, and their r(2) values of linkage disequilibrium were significantly higher in the Mexican population than in Africans from the 1000 Genomes Project. We observed reticulations in both the haplotypes network analysis from seven marker associates and the neighborNet tree based on 6061 markers in the TCF7L2 gene identified from all samples of the 1000 Genomes Project. Finally, we identified two recombination hotspots in the upstream region and 3' end of the TCF7L2 gene. The lack of diversity in intronic region 4-6 in Indigenous populations could be an effect of selective sweeps generated by the selection of neighboring rare variants at T2D-associated mutations. The survivors' variants make the intronic region 4-6 the area of the greatest population differentiation within the TCF7L2 gene. The abundance of selective peak sweeps in the downstream region of the TCF7L2 gene suggests that the TCF7L2 gene is part of a region that is in constant recombination between populations.

Understanding Madden-Julian-Induced sea surface temperature variations in the North Western Australian Basin

NASA Astrophysics Data System (ADS)

Vialard, J.; Drushka, K.; Bellenger, H.; Lengaigne, M.; Pous, S.; Duvel, J. P.

2013-12-01

The strongest large-scale intraseasonal (30-110 day) sea surface temperature (SST) variations in austral summer in the tropics are found in the eastern Indian Ocean between Australia and Indonesia (North-Western Australian Basin, or NWAB). TMI and Argo observations indicate that the temperature signal (std. ~0.4 °C) is most prominent within the top 20 m. This temperature signal appears as a standing oscillation with a 40-50 day timescale within the NWAB, associated with ~40 Wm-2 net heat fluxes (primarily shortwave and latent) and ~0.02 Nm-2 wind stress perturbations. This signal is largely related to the Madden-Julian Oscillation. A slab ocean model with climatological observed mixed-layer depth and an ocean general circulation model both accurately reproduce the observed intraseasonal SST oscillations in the NWAB. Both indicate that most of the intraseasonal SST variations in the NWAB in austral winter are related to surface heat flux forcing, and that intraseasonal SST variations are largest in austral summer because the mixed-layer is shallow (~20 m) and thus more responsive during that season. The general circulation model indicates that entrainment cooling plays little role in intraseasonal SST variations. The larger intraseasonal SST variations in the NWAB as compared to the widely-studied thermocline-ridge of the Indian Ocean region is explained by the larger convective and air-sea heat flux perturbations in the NWAB.

Mathematical modelling of ionospheric TEC from Turkish permanent GNSS Network (TPGN) observables during 2009-2017 and predictability of NeQuick and Kriging models

NASA Astrophysics Data System (ADS)

Ansari, Kutubuddin; Panda, Sampad Kumar; Corumluoglu, Ozsen

2018-03-01

The present study examines the ionospheric Total Electron Content (TEC) variations in the lower mid-latitude Turkish region from the Turkish permanent GNSS network (TPGN) and International GNSS Services (IGS) observations during the years 2009 to 2017. The corresponding vertical TEC (VTEC) predicted by Kriging and NeQuick-2 models are evaluated to realize their efficacy over the country. We studied the diurnal, seasonal and spatial pattern of VTEC variation and tried to estimate by a new mathematical model using the long term of 9 years VTEC data. The diurnal variation of VTEC demonstrates a normal trend with its gradual enhancement from dawn to attain a peak around 09:00-14.00 UT and reaching the minimum level after 22.00 UT. The seasonal behavior of VTEC indicates a strong semi-annual variation of VTEC with maxima in September equinox followed by March equinox and minima in June solstice followed by December solstice. Also, the spatial variation in VTEC depicts a meaningful longitudinal/latitudinal pattern altering with seasons. It decreases longitudinally from the west to the east during March equinox and June solstice increases with latitude. The comparative analysis among the GNSS-VTEC, Kriging, NeQuick and the proposed mathematical model are evaluated with the help one way ANOVA test. The analysis shows that the null hypothesis of the models during storm and quiet days are accepted and suggesting that all models are statistically significantly equivalent from each other. We believe the outcomes from this study would complement towards a relatively better understanding of the lower mid-latitude VTEC variation over the Turkish region and analogous latitudes over the globe.

Numerical simulations of the seasonal/latitudinal variations of atomic oxygen and nitric oxide in the lower thermosphere and mesosphere

NASA Technical Reports Server (NTRS)

Rees, D.; Fuller-Rowell, T. J.

1989-01-01

A 2-Dimensional zonally-averaged thermospheric model and the global University College London (UCL) thermospheric model have been used to investigate the seasonal, solar activity and geomagnetic variation of atomic oxygen and nitric oxide. The 2-dimensional model includes detailed oxygen and nitrogen chemistry, with appropriate completion of the energy equation, by adding the thermal infrared cooling by O and NO. This solution includes solar and auroral production of odd nitrogen compounds and metastable species. This model has been used for three investigations; firstly, to study the interactions between atmospheric dynamics and minor species transport and density; secondly, to examine the seasonal variations of atomic oxygen and nitric oxide within the upper mesosphere and thermosphere and their response to solar and geomagnetic activity variations; thirdly, to study the factor of 7 to 8 peak nitric oxide density increase as solar F sub 10.7 cm flux increases from 70 to 240 reported from the Solar Mesospheric Explorer. Auroral production of NO is shown to be the dominant source at high latitudes, generating peak NO densities a factor of 10 greater than typical number densities at low latitudes. At low latitudes, the predicted variation of the peak NO density, near 110 km, with the solar F sub 10.7 cm flux is rather smaller than is observed. This is most likely due to an overestimate of the soft X-ray flux at low solar activity, for times of extremely low support number, as occurred in June 1986. As observed on pressure levels, the variation of O density is small. The global circulation during solstice and periods of elevated geomagnetic activity causes depletion of O in regions of upwelling, and enhancements in regions of downwelling.

Seasonal Variations in Mortality, Clinical, and Laboratory Parameters in Hemodialysis Patients: A 5-Year Cohort Study

PubMed Central

Usvyat, Len A.; Carter, Mary; Thijssen, Stephan; Kooman, Jeroen P.; van der Sande, Frank M.; Zabetakis, Paul; Balter, Paul; Levin, Nathan W.; Kotanko, Peter

2012-01-01

Summary Background and objectives Mortality varies seasonally in the general population, but it is unknown whether this phenomenon is also present in hemodialysis patients with known higher background mortality and emphasis on cardiovascular causes of death. This study aimed to assess seasonal variations in mortality, in relation to clinical and laboratory variables in a large cohort of chronic hemodialysis patients over a 5-year period. Design, setting, participants, & measurements This study included 15,056 patients of 51 Renal Research Institute clinics from six states of varying climates in the United States. Seasonal differences were assessed by chi-squared tests and univariate and multivariate cosinor analyses. Results Mortality, both all-cause and cardiovascular, was significantly higher during winter compared with other seasons (14.2 deaths per 100 patient-years in winter, 13.1 in spring, 12.3 in autumn, and 11.9 in summer). The increase in mortality in winter was more pronounced in younger patients, as well as in whites and in men. Seasonal variations were similar across climatologically different regions. Seasonal variations were also observed in neutrophil/lymphocyte ratio and serum calcium, potassium, and platelet values. Differences in mortality disappeared when adjusted for seasonally variable clinical parameters. Conclusions In a large cohort of dialysis patients, significant seasonal variations in overall and cardiovascular mortality were observed, which were consistent over different climatic regions. Other physiologic and laboratory parameters were also seasonally different. Results showed that mortality differences were related to seasonality of physiologic and laboratory parameters. Seasonal variations should be taken into account when designing and interpreting longitudinal studies in dialysis patients. PMID:22096041

Cis-regulatory Evolution of Chalcone-Synthase Expression in the Genus Arabidopsis

PubMed Central

de Meaux, Juliette; Pop, A.; Mitchell-Olds, T.

2006-01-01

The contribution of cis-regulation to adaptive evolutionary change is believed to be essential, yet little is known about the evolutionary rules that govern regulatory sequences. Here, we characterize the short-term evolutionary dynamics of a cis-regulatory region within and among two closely related species, A. lyrata and A. halleri, and compare our findings to A. thaliana. We focused on the cis-regulatory region of chalcone synthase (CHS), a key enzyme involved in the synthesis of plant secondary metabolites. We observed patterns of nucleotide diversity that differ among species but do not depart from neutral expectations. Using intra- and interspecific F1 progeny, we have evaluated functional cis-regulatory variation in response to light and herbivory, environmental cues, which are known to induce CHS expression. We find that substantial cis-regulatory variation segregates within and among populations as well as between species, some of which results from interspecific genetic introgression. We further demonstrate that, in A. thaliana, CHS cis-regulation in response to herbivory is greater than in A. lyrata or A. halleri. Our work indicates that the evolutionary dynamics of a cis-regulatory region is characterized by pervasive functional variation, achieved mostly by modification of response modules to one but not all environmental cues. Our study did not detect the footprint of selection on this variation. PMID:17028316

Recharge signal identification based on groundwater level observations.

PubMed

Yu, Hwa-Lung; Chu, Hone-Jay

2012-10-01

This study applied a method of the rotated empirical orthogonal functions to directly decompose the space-time groundwater level variations and determine the potential recharge zones by investigating the correlation between the identified groundwater signals and the observed local rainfall records. The approach is used to analyze the spatiotemporal process of piezometric heads estimated by Bayesian maximum entropy method from monthly observations of 45 wells in 1999-2007 located in the Pingtung Plain of Taiwan. From the results, the primary potential recharge area is located at the proximal fan areas where the recharge process accounts for 88% of the spatiotemporal variations of piezometric heads in the study area. The decomposition of groundwater levels associated with rainfall can provide information on the recharge process since rainfall is an important contributor to groundwater recharge in semi-arid regions. Correlation analysis shows that the identified recharge closely associates with the temporal variation of the local precipitation with a delay of 1-2 months in the study area.

Variation between the oral and faecal microbiota in a free-living passerine bird, the great tit (Parus major).

PubMed

Kropáčková, Lucie; Pechmanová, Hana; Vinkler, Michal; Svobodová, Jana; Velová, Hana; Těšičký, Martin; Martin, Jean-François; Kreisinger, Jakub

2017-01-01

The gastrointestinal tract of vertebrates is inhabited by diverse bacterial communities that induce marked effects on the host physiology and health status. The composition of the gastrointestinal microbiota is characterized by pronounced taxonomic and functional variability among different regions of the vertebrate gastrointestinal tract. Despite the relatively solid knowledge on the among-region variations of the gastrointestinal microbiota in model mammalian species, there are only a few studies concerning among-region variations of the gastrointestinal microbiota in free-living non-mammalian vertebrate taxa. We used Illumina MiSeq sequencing of bacterial 16S rRNA amplicons to compare the diversity as well as taxonomic composition of bacterial communities in proximal vs. distal parts of the gastrointestinal tract (represented by oral swabs and faecal samples, respectively) in a wild passerine bird, the great tit (Parus major). The diversity of the oral microbiota was significantly higher compared to the faecal microbiota, whereas interindividual variation was higher in faecal than in oral samples. We also observed a pronounced difference in taxonomic content between the oral and faecal microbiota. Bacteria belonging to the phyla Proteobacteria, Firmicutes and Actinobacteria typically dominated in both oral and faecal samples. A high abundance of bacteria belonging to Tenericutes was observed only in faecal samples. Surprisingly, we found only a slight correlation between the faecal and oral microbiota at the within-individual level, suggesting that the microbial composition in these body sites is shaped by independent regulatory processes. Given the independence of these two communities at the individual level, we propose that simultaneous sampling of the faecal and oral microbiota will extend our understanding of host vs. microbiota interactions in wild populations.

Extension of short-term variation study of Kangilerngata Sermia, Greenland

NASA Astrophysics Data System (ADS)

Kane, E.; Rignot, E. J.; Mouginot, J.

2017-12-01

Iceberg calving is an important but not well-understood aspect of predicting future sea level rise, mostly due to lack of observations. In this study a Gamma Portable Radar Interferometer (GPRI) was deployed for three weeks to observe short-term variations at Kangilerngata Sermia, West Greenland, with the goal of increasing observations of calving events and short-term velocity variations. A diurnal velocity cycle was measured and attributed to melt water production increasing basal lubrication. Many iceberg calving events were observed; one of which was immediately followed by a velocity increase of 35% that lasted 5 hours. We propose that this event was grounded ice and that the removal of basal drag associated with the calving allowed for acceleration of the glacier. Other calving from the region of floating ice had no effect on glacier speed. CTD data from 2008-2016 in the glacier fjord is analyzed to investigate ice-ocean interactions and the role of warm Atlantic water in glacial retreat. This work was funded by a grant from NASA Cryosphere Science and by the UC Irvine Donald Bren fund.

Brazilian Normative Data on Letter and Category Fluency Tasks: Effects of Gender, Age, and Geopolitical Region

PubMed Central

Hazin, Izabel; Leite, Gilmara; Oliveira, Rosinda M.; Alencar, João C.; Fichman, Helenice C.; Marques, Priscila d. N.; de Mello, Claudia Berlim

2016-01-01

Verbal fluency is a basic function of language that refers to the ability to produce fluent speech. Despite being an essentially linguistic function, its measurements are also used to evaluate executive aspects of verbal behavior. Performance in verbal fluency (VF) tasks varies according to age, education, and cognitive development. Neurodevelopmental disorders that affect the functioning of frontal areas tend to cause lower performance in VF tasks. Despite the relative consensus that has been reached in terms of the use of VF tasks for the diagnosis of dyslexia and attention-deficit/hyperactivity disorder, few studies have considered regional variations in Brazil. The present study sought to provide normative data on VF tasks in children by considering gender, age, education, and geopolitical region of origin with auxiliary purposes in neuropsychological diagnosis of disorders that occur with executive changes The study included 298 participants, 7–10 years of age of both genders, who performed three letter fluency tasks and three category fluency tasks. The data were subjected to correlational and variance analyses, with age and gender as factors. No effect of gender on the children's performance was found. However, significant differences between age groups were observed, with better performance in letter tasks in older children and better performance in letter tasks compared with category tasks. Significant regional differences in performance on the letter VF task were observed. These results reinforce the importance of regional normative data in countries with high regional cultural variations, such as Brazil. PMID:27242598

The nucleotide composition of microbial genomes indicates differential patterns of selection on core and accessory genomes.

PubMed

Bohlin, Jon; Eldholm, Vegard; Pettersson, John H O; Brynildsrud, Ola; Snipen, Lars

2017-02-10

The core genome consists of genes shared by the vast majority of a species and is therefore assumed to have been subjected to substantially stronger purifying selection than the more mobile elements of the genome, also known as the accessory genome. Here we examine intragenic base composition differences in core genomes and corresponding accessory genomes in 36 species, represented by the genomes of 731 bacterial strains, to assess the impact of selective forces on base composition in microbes. We also explore, in turn, how these results compare with findings for whole genome intragenic regions. We found that GC content in coding regions is significantly higher in core genomes than accessory genomes and whole genomes. Likewise, GC content variation within coding regions was significantly lower in core genomes than in accessory genomes and whole genomes. Relative entropy in coding regions, measured as the difference between observed and expected trinucleotide frequencies estimated from mononucleotide frequencies, was significantly higher in the core genomes than in accessory and whole genomes. Relative entropy was positively associated with coding region GC content within the accessory genomes, but not within the corresponding coding regions of core or whole genomes. The higher intragenic GC content and relative entropy, as well as the lower GC content variation, observed in the core genomes is most likely associated with selective constraints. It is unclear whether the positive association between GC content and relative entropy in the more mobile accessory genomes constitutes signatures of selection or selective neutral processes.

Spatiotemporal Variations in the Difference between Satellite-observed Land Surface Temperature and Station-based Near-surface Air Temperature

NASA Astrophysics Data System (ADS)

Lian, X.

2016-12-01

There is an increasing demand to integrate land surface temperature (LST) into climate research due to its global coverage, which requires a comprehensive knowledge of its distinctive characteristics compared to near-surface air temperature ( ). Using satellite observations and in-situ station-based datasets, we conducted a global-scale assessment of the spatial, seasonal, and interannual variations in the difference between daytime maximum LST and daytime maximum ( , LST - ) during 2003-2014. Spatially, LST is generally higher than over arid and sparsely vegetated regions in the mid-low latitudes, but LST is lower than in the tropical rainforests due to strong evaporative cooling, and in the high-latitude regions due to snow-induced radiative cooling. Seasonally, is negative in tropical regions throughout the year, while it displays a pronounced seasonality in both the mid-latitudes and boreal regions. The seasonality in the mid-latitudes is a result of the asynchronous responses of LST and to the seasonal cycle of radiation and vegetation abundance, whereas in the boreal regions, seasonality is mainly caused by the change in snow cover. At an interannual scale, only a small proportion of the land surface displays a statistically significant trend (P <0.05) due to the short time span of current measurements. Our study identified substantial spatial heterogeneity and seasonality in , as well as its determinant environmental drivers, and thus provides a useful reference for monitoring near-surface temperature changes using remote sensing, particularly in remote regions.

Distinguishing modified gravity models

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brax, Philippe; Davis, Anne-Christine, E-mail: philippe.brax@cea.fr, E-mail: A.C.Davis@damtp.cam.ac.uk

2015-10-01

Modified gravity models with screening in local environments appear in three different guises: chameleon, K-mouflage and Vainshtein mechanisms. We propose to look for differences between these classes of models by considering cosmological observations at low redshift. In particular, we analyse the redshift dependence of the fine structure constant and the proton to electron mass ratio in each of these scenarios. When the absorption lines belong to unscreened regions of space such as dwarf galaxies, a time variation would be present for chameleons. For both K-mouflage and Vainshtein mechanisms, the cosmological time variation of the scalar field is not suppressed inmore » both unscreened and screened environments, therefore enhancing the variation of constants and their detection prospect. We also consider the time variation of the redshift of distant objects using their spectrocopic velocities. We find that models of the K-mouflage and Vainshtein types have very different spectroscopic velocities as a function of redshift and that their differences with the Λ-CDM template should be within reach of the future ELT-HIRES observations.« less

Genome-wide recombination dynamics are associated with phenotypic variation in maize.

PubMed

Pan, Qingchun; Li, Lin; Yang, Xiaohong; Tong, Hao; Xu, Shutu; Li, Zhigang; Li, Weiya; Muehlbauer, Gary J; Li, Jiansheng; Yan, Jianbing

2016-05-01

Meiotic recombination is a major driver of genetic diversity, species evolution, and agricultural improvement. Thus, an understanding of the genetic recombination landscape across the maize (Zea mays) genome will provide insight and tools for further study of maize evolution and improvement. Here, we used c. 50 000 single nucleotide polymorphisms to precisely map recombination events in 12 artificial maize segregating populations. We observed substantial variation in the recombination frequency and distribution along the ten maize chromosomes among the 12 populations and identified 143 recombination hot regions. Recombination breakpoints were partitioned into intragenic and intergenic events. Interestingly, an increase in the number of genes containing recombination events was accompanied by a decrease in the number of recombination events per gene. This kept the overall number of intragenic recombination events nearly invariable in a given population, suggesting that the recombination variation observed among populations was largely attributed to intergenic recombination. However, significant associations between intragenic recombination events and variation in gene expression and agronomic traits were observed, suggesting potential roles for intragenic recombination in plant phenotypic diversity. Our results provide a comprehensive view of the maize recombination landscape, and show an association between recombination, gene expression and phenotypic variation, which may enhance crop genetic improvement. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

Spherical Cap Harmonic Modelling of 400 Years of Secular Variation in the South-west Pacific

NASA Astrophysics Data System (ADS)

Ingham, M.; Alfheid, M.; Ingham, E. M.; Turner, G. M.

2014-12-01

Historical magnetic data recorded in ship's logs on voyages of exploration and trade in the south-west Pacific have been used as a basis for constructing a model of secular variation in the region using spherical cap harmonic (SCH) analysis. The spherical cap used is centred on colatitude 115° and longitude 160° and has a radius of 50°, thus covering New Zealand, Australia and parts of Antarctica. Gaps in the observational data have been filled by an iterative procedure started by using IGRF field values to obtain SCH models for 2000, 1950 and 1900 and assuming that the spherical cap coefficients have a linear variation in time over the 400 year time period of the model, as is observed to a first approximation for Gauss coefficients calculated from a global spherical harmonic analysis. The resulting field models have generally smooth spatial and temporal variations in declination, inclination and intensity which show some differences from the variations calculated using the global spherical harmonic model gufm1. The technique clearly shows promise for producing more refined models of secular variation in the south-west Pacific when the historical data are supplemented by archeomagnetic and paleomagnetic data.

Cloud condensation nuclei in Western Colorado: Observations and model predictions

NASA Astrophysics Data System (ADS)

Ward, Daniel Stewart

Variations in the warm cloud-active portion of atmospheric aerosols, or cloud condensation nuclei (CCN), have been shown to impact cloud droplet number concentration and subsequently cloud and precipitation processes. This issue carries special significance in western Colorado where a significant portion of the region's water resources is supplied by precipitation from winter season, orographic clouds, which are particularly sensitive to variations in CCN. Temporal and spatial variations in CCN in western Colorado were investigated using a combination of observations and a new method for modeling CCN. As part of the Inhibition of Snowfall by Pollution Aerosols (ISPA-III) field campaign, total particle and CCN number concentration were measured for a 24-day period in Mesa Verde National Park, climatologically upwind of the San Juan Mountains. These data were combined with CCN observations from Storm Peak Lab (SPL) in northwestern Colorado and from the King Air platform, flying north to south along the Western Slope. Altogether, the sampled aerosols were characteristic of a rural continental environment and the cloud-active portion varied slowly in time, and little in space. Estimates of the is hygroscopicity parameter indicated consistently low aerosol hygroscopicity typical of organic aerosol species. The modeling approach included the addition of prognostic CCN to the Regional Atmospheric Modeling System (RAMS). The RAMS droplet activation scheme was altered using parcel model simulations to include variations in aerosol hygroscopicity, represented by K. Analysis of the parcel model output and a supplemental sensitivity study showed that model CCN will be sensitive to changes in aerosol hygroscopicity, but only for conditions of low supersaturation or small particle sizes. Aerosol number, size distribution median radius, and hygroscopicity (represented by the K parameter) in RAMS were constrained by nudging to forecasts of these quantities from the Weather Research and Forecasting with Chemistry (WRF/Chem) model. The new system was validated against observations from SPL and research flights along the Colorado Front Range, and used to test the sensitivity of CCN in western Colorado to various anthropogenic emissions of aerosols and aerosol precursor gases. Results showed complex interactions between gas and aerosol species that could lead to an increase in CCN even when some emissions are eliminated. Both observations and modeling suggest that, although several large anthropogenic aerosol sources are located within the study region, these sources have a minor impact on the local CCN population.

The ambient stress field in the continental margin around the Korean Peninsula and Japanese islands

NASA Astrophysics Data System (ADS)

Lee, J.; Hong, T. K.; Chang, C.

2016-12-01

The ambient stress field is mainly influenced by regional tectonics. The stress field composition is crucial information for seismic hazard assessment. The Korean Peninsula, Japanese Islands and East Sea comprise the eastern margin of the Eurasian plate. The regions are surrounded by the Okhotsk, Pacific, and Philippine Sea plates. We investigate the regional stress field around the Korean Peninsula and Japanese islands using the focal mechanism solutions of regional earthquakes. Complex lateral and vertical variations of regional crustal stress fields are observed around a continental margin. The dominant compression directions are ENE-WSW around the Korean Peninsula and eastern China, E-W in the central East Sea and northern and southern Japan, NW-SE in the central Japan, and N-S around the northern Nankai trough. The horizontal compression directions are observed to be different by fault type, suggesting structure-dependent stress field distortion. The regional stress field change by depth and location, suggesting that the compression and tension stress may alternate in local region. The stress field and structures affect mutually, causing stress field distortion and reactivation of paleo-structures. These observation may be useful for understanding of local stress-field perturbation for seismic hazard mitigation of the region.

Global map of the prevalence of symptoms of rhinoconjunctivitis in children: The International Study of Asthma and Allergies in Childhood (ISAAC) Phase Three.

PubMed

Aït-Khaled, N; Pearce, N; Anderson, H R; Ellwood, P; Montefort, S; Shah, J

2009-01-01

Phase One of the International Study of Asthma and Allergies in Childhood (ISAAC) measured the global patterns of prevalence and severity of symptoms of rhinoconjunctivitis in children in 1993-1997. International Study of Asthma and Allergies in Childhood Phase Three was a cross-sectional survey performed 5-10 years after Phase One using the same methodology. Phase Three covered all of the major regions of the world and involved 1 059 053 children of 2 age groups from 236 centres in 98 countries. The average overall prevalence of current rhinoconjunctivitis symptoms was 14.6% for the 13- to 14-year old children (range 1.0-45%). Variation in the prevalence of severe rhinoconjunctivitis symptoms was observed between centres (range 0.0-5.1%) and regions (range 0.4% in western Europe to 2.3% in Africa), with the highest prevalence being observed mainly in the centres from middle and low income countries, particularly in Africa and Latin America. Co-morbidity with asthma and eczema varied from 1.6% in the Indian sub-continent to 4.7% in North America. For 6- to 7-year old children, the average prevalence of rhinoconjunctivitis symptoms was 8.5%, and large variations in symptom prevalence were also observed between regions, countries and centres. Wide global variations exist in the prevalence of current rhinoconjunctivitis symptoms, being higher in high vs low income countries, but the prevalence of severe symptoms was greater in less affluent countries. Co-morbidity with asthma is high particularly in Africa, North America and Oceania. This global map of symptom prevalence is of clinical importance for health professionals.

Lateral variation in upper mantle temperature and composition beneath mid-ocean ridges inferred from shear-wave propagation, geoid, and bathymetry. Ph.D. Thesis

NASA Technical Reports Server (NTRS)

Sheehan, Anne Francis

1991-01-01

Resolution of both the extent and mechanism of lateral heterogeneity in the upper mantle constraints the nature and scales of mantle convection. Oceanic regions are of particular interest as they are likely to provide the closest glimpse at the patterns of temperature anomalies and convective flow in the upper mantle because of their young age and simple crustal structure relative to continental regions. Lateral variations were determined in the seismic velocity and attenuation structure of the lithosphere and astenosphere beneath the oceans, and these seismological observations were combined with the data and theory of geoid and bathymetry anomalies in order to test and improve current models for seafloor spreading and mantle convection. Variations were determined in mantle properties on a scale of about 1000 km, comparable to the thickness of the upper mantle. Seismic velocity, geoid, and bathymetry anomalies are all sensitive to variations in upper mantle density, and inversions were formulated to combine quantitatively these different data and to search for a common origin. Variations in mantle density can be either of thermal or compositional origin and are related to mantle convection or differentiation.

Mechanical property assessment of tissue-mimicking phantoms using remote palpation and optical read-out for amplitude of vibration and refractive index modulation.

PubMed

Usha Devi, C; Bharat Chandran, R S; Vasu, R Mohan; Sood, Ajay K

2007-01-01

A coherent light beam is used to interrogate the focal region within a tissue-mimicking phantom insonified by an ultrasound transducer. The ultrasound-tagged photons exiting from the object carry with them information on local optical path length fluctuations caused by refractive index variations and medium vibration. Through estimation of the force distribution in the focal region of the ultrasound transducer, and solving the forward elastography problem for amplitude of vibration of tissue particles, we observe that the amplitude is directed along the axis of the transducer. It is shown that the focal region interrogated by photons launched along the transducer axis carries phase fluctuations owing to both refractive index variations and particle vibration, whereas the photons launched perpendicular to the transducer axis carry phase fluctuations arising mainly from the refractive index variations, with only smaller contribution from vibration of particles. Monte-Carlo simulations and experiments done on tissue-mimicking phantoms prove that as the storage modulus of the phantom is increased, the detected modulation depth in autocorrelation is reduced, significantly for axial photons and only marginally for the transverse-directed photons. It is observed that the depth of modulation is reduced to a significantly lower and constant value as the storage modulus of the medium is increased. This constant value is found to be the same for both axial and transverse optical interrogation. This proves that the residual modulation depth is owing to refractive index fluctuations alone, which can be subtracted from the overall measured modulation depth, paving the way for a possible quantitative reconstruction of storage modulus. Moreover, since the transverse-directed photons are not significantly affected by storage modulus variations, for a quantitatively accurate read-out of absorption coefficient variation, the interrogating light should be perpendicular to the focusing ultrasound transducer axis.

The role of ensemble-based statistics in variational assimilation of cloud-affected observations from infrared imagers

NASA Astrophysics Data System (ADS)

Hacker, Joshua; Vandenberghe, Francois; Jung, Byoung-Jo; Snyder, Chris

2017-04-01

Effective assimilation of cloud-affected radiance observations from space-borne imagers, with the aim of improving cloud analysis and forecasting, has proven to be difficult. Large observation biases, nonlinear observation operators, and non-Gaussian innovation statistics present many challenges. Ensemble-variational data assimilation (EnVar) systems offer the benefits of flow-dependent background error statistics from an ensemble, and the ability of variational minimization to handle nonlinearity. The specific benefits of ensemble statistics, relative to static background errors more commonly used in variational systems, have not been quantified for the problem of assimilating cloudy radiances. A simple experiment framework is constructed with a regional NWP model and operational variational data assimilation system, to provide the basis understanding the importance of ensemble statistics in cloudy radiance assimilation. Restricting the observations to those corresponding to clouds in the background forecast leads to innovations that are more Gaussian. The number of large innovations is reduced compared to the more general case of all observations, but not eliminated. The Huber norm is investigated to handle the fat tails of the distributions, and allow more observations to be assimilated without the need for strict background checks that eliminate them. Comparing assimilation using only ensemble background error statistics with assimilation using only static background error statistics elucidates the importance of the ensemble statistics. Although the cost functions in both experiments converge to similar values after sufficient outer-loop iterations, the resulting cloud water, ice, and snow content are greater in the ensemble-based analysis. The subsequent forecasts from the ensemble-based analysis also retain more condensed water species, indicating that the local environment is more supportive of clouds. In this presentation we provide details that explain the apparent benefit from using ensembles for cloudy radiance assimilation in an EnVar context.

22 July 2009 total solar eclipse induced gravity waves in ionosphere as inferred from GPS observations over EIA

NASA Astrophysics Data System (ADS)

Kumar, K. Vijay; Maurya, Ajeet K.; Kumar, Sanjay; Singh, Rajesh

2016-11-01

In the present contribution we investigate the variation in the Global Positioning System (GPS) derived ionospheric Total Electron Content (TEC) over Equatorial Ionization Anomaly (EIA) region on the rare occasional astronomical phenomenon of total solar eclipse of 22 July 2009. The aim is to study and identify the wave like structure enumerated due to solar eclipse induced gravity waves in the F-region ionosphere altitude. The work is aimed to understand features of horizontal and vertical variation of atmospheric gravity waves (AGWs) properties over the Equatorial Ionization Anomaly (EIA) region in Indian low latitude region. The ionospheric observations is from the site of Allahabad (lat 25.4° N; lon. 81.9° E; dip 38.6° N) located at the fringe of eclipse totality path. The estimated vertical electron density profile from FORMOSAT-3/COSMIC GPS-RO satellite, considering all the satellite line of sight around the time of eclipse totality shows maximum depletion of 43%. The fast fourier transform and wavelet transform of GPS DTEC data from Allahabad station (Allahabad: lat 25.4 N; lon. 81.9 E) shows the presence of periodic waves of ∼20 to 45 min and ∼70 to 90 min period at F-region altitude. The shorter period correspond to the sunrise time morning terminator and longer period can be associated with solar eclipse generated AGWs. The most important result obtained is that our results along with previous result for wave like signatures in D-region ionosphere from Allahabad station show that AGWs generated by sunrise time terminator have similarity in the D and F region of the ionosphere but solar eclipse induced AGWs show higher period in the F-region compared to D-region ionosphere.

Integrating Remote Sensing, Field Observations, and Models to Understand Disturbance and Climate Effects on the Carbon Balance of the West Coast U.S.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cohen, Warren

2014-07-03

As an element of NACP research, the proposed investigation is a two pronged approach that derives and evaluates a regional carbon (C) budget for Oregon, Washington, and California. Objectives are (1) Use multiple data sources, including AmeriFlux data, inventories, and multispectral remote sensing data to investigate trends in carbon storage and exchanges of CO2 and water with variation in climate and disturbance history; (2) Develop and apply regional modeling that relies on these multiple data sources to reduce uncertainty in spatial estimates of carbon storage and NEP, and relative contributions of terrestrial ecosystems and anthropogenic emissions to atmospheric CO2 inmore » the region; (3) Model terrestrial carbon processes across the region, using the Biome-BGC terrestrial ecosystem model, and an atmospheric inverse modeling approach to estimate variation in rate and timing of terrestrial uptake and feedbacks to the atmosphere in response to climate and disturbance.« less

Integrating Remote Sensing, Field Observations, and Models to Understand Disturbance and Climate Effects on the Carbon Balance of the West Coast U.S., Final Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Beverly E. Law

2011-10-05

As an element of NACP research, the proposed investigation is a two pronged approach that derives and evaluates a regional carbon (C) budget for Oregon, Washington, and California. Objectives are (1) Use multiple data sources, including AmeriFlux data, inventories, and multispectral remote sensing data to investigate trends in carbon storage and exchanges of CO2 and water with variation in climate and disturbance history; (2) Develop and apply regional modeling that relies on these multiple data sources to reduce uncertainty in spatial estimates of carbon storage and NEP, and relative contributions of terrestrial ecosystems and anthropogenic emissions to atmospheric CO2 inmore » the region; (3) Model terrestrial carbon processes across the region, using the Biome-BGC terrestrial ecosystem model, and an atmospheric inverse modeling approach to estimate variation in rate and timing of terrestrial uptake and feedbacks to the atmosphere in response to climate and disturbance.« less

Time variations of oxygen emission lines and solar wind dynamic parameters in low latitude region

NASA Astrophysics Data System (ADS)

Jamlongkul, P.; Wannawichian, S.; Mkrtichian, D.; Sawangwit, U.; A-thano, N.

2017-09-01

Aurora phenomenon is an effect of collision between precipitating particles with gyromotion along Earth’s magnetic field and Earth’s ionospheric atoms or molecules. The particles’ precipitation occurs normally around polar regions. However, some auroral particles can reach lower latitude regions when they are highly energetic. A clear emission from Earth’s aurora is mostly from atomic oxygen. Moreover, the sun’s activities can influence the occurrence of the aurora as well. This work studies time variations of oxygen emission lines and solar wind parameters, simultaneously. The emission’s spectral lines were observed by Medium Resolution Echelle Spectrograph (MRES) along with 2.4 meters diameter telescope at Thai National Observatory, Intanon Mountain, Chiang Mai, Thailand. Oxygen (OI) emission lines were calibrated by Dech-Fits spectra processing program and Dech95 2D image processing program. The correlations between oxygen emission lines and solar wind dynamics will be analyzed. This result could be an evidence of the aurora in low latitude region.

Compositional variation in the Hadley Apennine region

NASA Technical Reports Server (NTRS)

Clark, P. E.; Hawke, B. R.

1982-01-01

Orbital geochemical data in the Hadley Apennine region are related to typical rock compositions and used in determining the distribution of soils derived from the rock types found in this region. Orbital XRF Mg/Si and Al/Si intensities are the orbital data that are used primarily. These data are corrected for spurious interorbit variation using a modification of a previously developed method. The corrected values are than converted to % MgO and % Al2O3, respectively, from theoretical considerations, and as such are compared with similar concentrations for typical lunar rocks and soils of the Apollo 15 landing site. The relationship of the XRF values to Fe, Ti, and Th concentrations, derived from gamma-ray observations, is also considered. It is established that the orbital geochemistry data for this region are consistent with the presence of a mixture of ANT suite and Fra Mauro basalt components frequently dominated by a KREEP basalt component toward the west and by a mafic pyroclastic component toward the east.

A determination of the spectra of Galactic components observed by the Wilkinson Microwave Anisotropy Probe

NASA Astrophysics Data System (ADS)

Davies, R. D.; Dickinson, C.; Banday, A. J.; Jaffe, T. R.; Górski, K. M.; Davis, R. J.

2006-08-01

Wilkinson Microwave Anisotropy Probe (WMAP) data when combined with ancillary data on free-free, synchrotron and dust allow an improved understanding of the spectrum of emission from each of these components. Here, we examine the sky variation at intermediate latitudes using a cross-correlation technique. In particular, we compare the observed emission in 15 selected sky regions to three `standard' templates. The free-free emission of the diffuse ionized gas is fitted by a well-known spectrum at K and Ka band, but the derived emissivity corresponds to a mean electron temperature of ~4000-5000 K. This is inconsistent with estimates from Galactic HII regions although a variation in the derived ratio of Hα to free-free intensity by a factor of ~2 is also found from region to region. The origin of the discrepancy is unclear. The anomalous emission associated with dust is clearly detected in most of the 15 fields studied. The anomalous emission correlates well with the Finkbeiner, Davis & Schlegel model 8 predictions (FDS8) at 94 GHz, with an effective spectral index between 20 and 60 GHz, of β ~ -2.85. Furthermore, the emissivity varies by a factor of ~2 from cloud to cloud. A modestly improved fit to the anomalous dust at K band is provided by modulating the template by an estimate of the dust colour temperature, specifically FDS8 × Tn. We find a preferred value n ~ 1.6, although there is a scatter from region to region. Nevertheless, the preferred index drops to zero at higher frequencies where the thermal dust emission dominates. The synchrotron emission steepens between GHz frequencies and the WMAP bands. There are indications of spectral index variations across the sky but the current data are not precise enough to accurately quantify this from region to region. Our analysis of the WMAP data indicates strongly that the dust-correlated emission at the low WMAP frequencies has a spectrum which is compatible with spinning dust; we find no evidence for a synchrotron component correlated with dust. The importance of these results for the correction of cosmic microwave background data for Galactic foreground emission is discussed.

Direct testing for allele-specific expression differences between conditions

USDA-ARS?s Scientific Manuscript database

Genetic differences in cis regulatory regions contribute to the phenotypic variation observed in natural and human populations, including beneficial, potentially adaptive, traits as well as disease states. The two alleles in a diploid cell can differ in their allele-specific expression leading to al...

The Relation between Recombination Rate and Patterns of Molecular Evolution and Variation in Drosophila melanogaster

PubMed Central

Campos, José L.; Halligan, Daniel L.; Haddrill, Penelope R.; Charlesworth, Brian

2014-01-01

Genetic recombination associated with sexual reproduction increases the efficiency of natural selection by reducing the strength of Hill–Robertson interference. Such interference can be caused either by selective sweeps of positively selected alleles or by background selection (BGS) against deleterious mutations. Its consequences can be studied by comparing patterns of molecular evolution and variation in genomic regions with different rates of crossing over. We carried out a comprehensive study of the benefits of recombination in Drosophila melanogaster, both by contrasting five independent genomic regions that lack crossing over with the rest of the genome and by comparing regions with different rates of crossing over, using data on DNA sequence polymorphisms from an African population that is geographically close to the putatively ancestral population for the species, and on sequence divergence from a related species. We observed reductions in sequence diversity in noncrossover (NC) regions that are inconsistent with the effects of hard selective sweeps in the absence of recombination. Overall, the observed patterns suggest that the recombination rate experienced by a gene is positively related to an increase in the efficiency of both positive and purifying selection. The results are consistent with a BGS model with interference among selected sites in NC regions, and joint effects of BGS, selective sweeps, and a past population expansion on variability in regions of the genome that experience crossing over. In such crossover regions, the X chromosome exhibits a higher rate of adaptive protein sequence evolution than the autosomes, implying a Faster-X effect. PMID:24489114

Persistent regional carbon dioxide anomalies driven by land use

NASA Astrophysics Data System (ADS)

Schultz, Colin

2012-04-01

Researchers have traditionally used measurements from remote locations, such as Hawaii's Mauna Loa Observatory and other isolated stations, to determine atmospheric carbon dioxide (CO2) concentrations and estimate the strengths of various carbon sources and sinks. The prevailing wisdom was that attempts to measure regional differences in CO2 over land would end up with signals that were either so small that they were undetectable or that were dominated by high-frequency variability due to atmospheric turbulence or weather. Measurements drawn from a moderately dense network of atmospheric gas composition sensors distributed across the upper midwestern United States, however, showed that large regional variations in tropospheric CO2 are readily observable. Drawing on measurements made at nine sensors spread over 400,000 square kilometers between 2007 and 2009, Miles et al. found that seasonal variations in atmospheric CO2 depend strongly on the type of ecosystem lying at the foot of each sensor tower.

Genetic Variation of Beet Armyworm (Lepidoptera: Noctuidae) Populations Detected Using Microsatellite Markers in Iran.

PubMed

Golikhajeh, Neshat; Naseri, Bahram; Razmjou, Jabraeil; Hosseini, Reza; Aghbolaghi, Marzieh Asadi

2018-05-28

In order to understand the population genetic diversity and structure of Spodoptera exigua (Hübner) (Lepidoptera: Noctuidae), a serious pest of sugar beet in Iran and the world, we genotyped 133 individuals from seven regions in Iran using four microsatellite loci. Significant difference was seen between the observed and expected heterozygosity in all loci. A lower observed heterozygosity than expected heterozygosity indicated a low heterozygosity in these populations. The value of F showed a high genetic differentiation, so that the mean of Fst was 0.21. Molecular analysis variance showed significant differences within and among populations with group variance accounted for 71 and 21%, respectively. No correlation was found between pair-wise Fst and geographic distance by Mantel test. Bayesian clustering analysis grouped all regions to two clusters. These data suggested that a combination of different factors, such as geographic distance, environmental condition, and physiological behavior in addition to genetic factors, could play an important role in forming variation within and between S. exigua populations.

Geophysical Observatory in Kamchatka region for monitoring of phenomena connected with seismic activity

NASA Astrophysics Data System (ADS)

Uyeda, S.; Nagao, T.; Hattori, K.; Hayakawa, M.; Miyaki, K.; Molchanov, O.; Gladychev, V.; Baransky, L.; Chtchekotov, A.; Fedorov, E.; Pokhotelov, O.; Andreevsky, S.; Rozhnoi, A.; Khabazin, Y.; Gorbatikov, A.; Gordeev, E.; Chebrov, V.; Sinitzin, V.; Lutikov, A.; Yunga, S.; Kosarev, G.; Surkov, V.; Belyaev, G.

Regular monitoring of some geophysical parameters in association with seismicity has been carried out since last year at the Japan-Russian Complex Geophysical Observatory in the Kamchatka region. This observatory was organized in connection with the ISTC project in Russia and was motivated by the results of the FRONTIER/RIKEN and FRONTIER/NASDA research projects in Japan. The main purpose of the observations is to investigate the electromagnetic and acoustic phenomena induced by the lithosphere processes (especially by seismic activity). The seismicity of the Kamchatka area is analyzed and a description of the observatory equipment is presented. At present, the activity of the observatory includes the seismic (frequency range ∆F = 0.5 - 40 Hz) and meteorological recordings, together with seismo-acoustic (∆F = 30 - 1000 Hz) and electromagnetic observations: three-component magnetic ULF variations ( ∆F = 0.003 - 30 Hz), three-component electric potential variations ( ∆F < 1.0 Hz), and VLF transmitter's signal perturbations ( ∆F ~ 10 - 40 kHz).

Hydrologically-driven crustal stresses and seismicity in the New Madrid Seismic Zone.

PubMed

Craig, Timothy J; Chanard, Kristel; Calais, Eric

2017-12-15

The degree to which short-term non-tectonic processes, either natural and anthropogenic, influence the occurrence of earthquakes in active tectonic settings or 'stable' plate interiors, remains a subject of debate. Recent work in plate-boundary regions demonstrates the capacity for long-wavelength changes in continental water storage to produce observable surface deformation, induce crustal stresses and modulate seismicity rates. Here we show that a significant variation in the rate of microearthquakes in the intraplate New Madrid Seismic Zone at annual and multi-annual timescales coincides with hydrological loading in the upper Mississippi embayment. We demonstrate that this loading, which results in geodetically observed surface deformation, induces stresses within the lithosphere that, although of small amplitude, modulate the ongoing seismicity of the New Madrid region. Correspondence between surface deformation, hydrological loading and seismicity rates at both annual and multi-annual timescales indicates that seismicity variations are the direct result of elastic stresses induced by the water load.

Geographic pattern of genetic variation in the European globeflower Trollius europaeus L. (Ranunculaceae) inferred from amplified fragment length polymorphism markers.

PubMed

Despres, Laurence; Loriot, Sandrine; Gaudeul, Myriam

2002-11-01

The distribution of genetic variation and the phylogenetic relationships between 18 populations of the arctic-alpine plant Trollius europaeus were analysed in three main regions (Alps, Pyrenees and Fennoscandia) by using dominant AFLP markers. Analysis of molecular variance revealed that most of the genetic variability was found within populations (64%), although variation among regions (17%) and among populations within regions (19%) was highly significant (P < 0.001). Accordingly, the global fixation index FST averaged over loci was high (0.39). The among-population differentiation indicates restricted gene flow, congruent with limited dispersal of specific globeflower's pollinating flies (Chiastocheta spp.). Within-population diversity levels were significantly higher in the Alps (mean Nei's expected heterozygosity HE = 0.229) than in the Pyrenees (HE= 0.197) or in Fennoscandia (HE = 0.158). This finding is congruent with the species-richness of the associated flies, which is maximum in the Alps. We discuss the processes involved in shaping observed patterns of genetic diversity within and among T. europaeus populations. Genetic drift is the major factor acting on the small Pyrenean populations at the southern edge of T. europaeus distribution, while large Fennoscandian populations result probably from a founder effect followed by demographic expansion. The Alpine populations represent moderately fragmented relics of large southern ancestral populations. The patterns of genetic variability observed in the host plant support the hypothesis of sympatric speciation in associated flies, rather than recurrent allopatric speciations.

TEC Variations Over Korean Peninsula During Magnetic Storm

NASA Astrophysics Data System (ADS)

Ji, E.-Y.; Choi, B.-K.; Kim, K.-H.; Lee, D.-H.; Cho, J.-H.; Chung, J.-K.; Park, J.-U.

2008-03-01

By analyzing the observations from a number of ground- and space-based instruments, including ionosonde, magnetometers, and ACE interplanetary data, we examine the response of the ionospheric TEC over Korea during 2003 magnetic storms. We found that the variation of vertical TEC is correlated with the southward turning of the interplanetary magnetic field B_z. It is suggested that the electric fields produced by the dynamo process in the high-latitude region and the prompt penetration in the low-latitude region are responsible for TEC increases. During the June 16 event, dayside TEC values increase more than 15%. And the ionospheric F2-layer peak height (hmF2) was ˜300km higher and the vertical E×B drift (estimated from ground-based magnetometer equatorial electrojet delta H) showed downward drift, which may be due to the ionospheric disturbance dynamo electric field produced by the large amount of energy dissipation into high-latitude regions. In contr! ast, during November 20 event, the nightside TEC increases may be due to the prompt penetration westward electric field. The ionospheric F2-layer peak height was below 200km and the vertical E×B drift showed downward drift. Also, a strong correlation is observed between enhanced vertical TEC and enhanced interplanetary electric field. It is shown that, even though TEC increases are caused by the different processes, the electric field disturbances in the ionosphere play an important role in the variation of TEC over Korea.

Drifting Diaphyses: Asymmetry in Diametric Growth and Adaptation Along the Humeral and Femoral Length.

PubMed

Maggiano, Isabel S; Maggiano, Corey M; Tiesler, Vera G; Chi-Keb, Julio R; Stout, Sam D

2015-10-01

This study quantifies regional histomorphological variation along the human humeral and femoral diaphysis in order to gain information on diaphyseal growth and modeling drift patterns. Three thin sections at 40, 50, and 60% bone length were prepared from a modern Mexican skeletal sample with known age and sex to give a longitudinal perspective on the drifting cortex (12 adults and juveniles total, 7 male and 5 female). Point-count techniques were applied across eight cross-sectional regions of interest using the starburst sampling pattern to quantify percent periosteal and endosteal primary lamellar bone at each diaphyseal level. The results of this study show a posterio-medial drift pattern in the humerus with a posterior rotational trend along the diaphysis. In the femur, we observed a consistent lateral to anteriolateral drift and an increase in primary lamellar bone area of both, periosteal and endosteal origin, towards the distal part of the diaphysis. These observations characterize drifting diaphyses in greater detail, raising important questions about how to resolve microscopic and macroscopic cross-sectional analysis towards a more complete understanding of bone growth and mechanical adaptation. Accounting for modeling drift has the potential to positively impact age and physical activity estimation, and explain some of the significant regional variation in bone histomorphology seen within (and between) bone cross-sections due to differing ages of tissue formation. More study is necessary, however, to discern between possible drift scenarios and characterize populational variation. © 2015 Wiley Periodicals, Inc.

New global electron density observations from GPS-RO in the D- and E-Region ionosphere

NASA Astrophysics Data System (ADS)

Wu, Dong L.

2018-06-01

A novel retrieval technique is developed for electron density (Ne) in the D- and E-region (80-120 km) using the high-quality 50-Hz GPS radio occultation (GPS-RO) phase measurements. The new algorithm assumes a slow, linear variation in the F-region background when the GPS-RO passes through the D- and E-region, and extracts the Ne profiles at 80-130 km from the phase advance signal caused by Ne. Unlike the conventional Abel function, the new approach produces a sharp Ne weighting function in the lower ionosphere, and the Ne retrievals are in good agreement with the IRI (International Reference Ionosphere) model in terms of monthly maps, zonal means and diurnal variations. The daytime GPS-RO Ne profiles can be well characterized by the α-Chapman function of three parameters (NmE, hmE and H), showing that the bottom of E-region is deepening and sharpening towards the summer pole. At high latitudes the monthly GPS-RO Ne maps at 80-120 km reveal clear enhancement in the auroral zones, more prominent at night, as a result of energetic electron precipitation (EEP) from the outer radiation belt. The D-/E-region auroral Ne is strongly correlated with Kp on a daily basis. The new Ne data allow further comprehensive analyses of the sporadic E (Es) phenomena in connection with the background Ne in the E-region. The layered (2-10 km) and fluctuated (<2 km) Es components, namely Ne_Layer than Ne_Pert, are extracted with respect to the background Ne_Region on a profile-by-profile basis. The Ne_Layer component has a strong but highly-refined peak at ∼105 km, with an amplitude smaller than Ne_Region approximately by an order of magnitude. The Ne_Pert component, which was studied extensively in the past, is ∼2 orders of magnitude weaker than Ne_Layer. Both Ne_Layer and Ne_Pert are subject to significant diurnal and semidiurnal variations, showing downward progression with local time in amplitude. The 11-year solar cycle dominates the Ne interannual variations, showing larger Ne_Region and Ne_Layer but smaller Ne_Pert amplitudes in the solar maximum years. Enhanced Ne profiles are often observed in the polar winter, showing good correlation with solar proton events (SPEs) and geomagnetic activity. The new methodology offers great potential for retrieving low Ne in the D-region, where radio propagation and communication blackouts can occur due to enhanced ionization. For space weather applications it is recommended for GPS-RO operations to raise the top of high-rate data acquisition to ∼140 km in the future.

Application of Remote Sensing to Assess the Impact of Short Term Climate Variability on Coastal Sedimentation

NASA Technical Reports Server (NTRS)

Menzel, W. Paul; Huh, Oscar K.; Walker, Nan

2004-01-01

The purpose of this joint University of Wisconsin (UW) and Louisiana State University (LSU) project has been to relate short term climate variation to response in the coastal zone of Louisiana in an attempt to better understand how the coastal zone is shaped by climate variation. Climate variation in this case largely refers to variation in surface wind conditions that affect wave action and water currents in the coastal zone. The primary region of focus was the Atchafalaya Bay and surrounding bays in the central coastal region of Louisiana. Suspended solids in the water column show response to wind systems both in quantity (through resuspension) and in the pattern of dispersement or transport. Wind systems associated with cold fronts are influenced by short term climate variation. Wind energy was used as the primary signature of climate variation in this study because winds are a significant influence on sediment transport in the micro-tidal Gilf of Mexico coastal zone. Using case studies, the project has been able to investigate the influence of short term climate variation on sediment transport. Wind energy data, collected daily for National Weather Service (NWS) stations at Lake Charles and New Orleans, LA, were used as an indicator of short term climate variation influence on seasonal time scales. A goal was to relate wind energy to coastal impact through sediment transport. This goal was partially accomplished by combining remote sensing and wind energy data. Daily high resolution remote sensing observations are needed to monitor the complex coastal zone environment, where winds, tides, and water level all interact to influence sediment transport. The NASA Earth Observing System (EOS) era brings hope for documenting and revealing response of the complex coastal transport mosaic through regular high spatial resolution observations from the Moderate resolution Imaging Spectrometer (MODIS) instrument. MODIS observations were sampled in this project for information content and should continue to be viewed as a resource for coastal zone monitoring. The project initialized the effort to transfer a suspended sediment concentration (SSC) algorithm to the MODIS platform for case 2 waters. MODIS enables monitoring of turbid coastal zones around the globe. The MODIS SSC algorithm requires refinements in the atmospheric aerosol contribution, sun glint influence, and designation of the sediment inherent optical properties (IOPs); the framework for continued development is in place with a plan to release the algorithm to the MODIS direct broadcast community.

Temperature Inversions and Nighttime Convection in the Martian Tropics

NASA Astrophysics Data System (ADS)

Hinson, D. P.; Spiga, A.; Lewis, S.; Tellmann, S.; Paetzold, M.; Asmar, S. W.; Häusler, B.

2013-12-01

We are using radio occultation measurements from Mars Express, Mars Reconnaissance Orbiter, and Mars Global Surveyor to characterize the diurnal cycle in the lowest scale height above the surface. We focus on northern spring and summer, using observations from 4 Martian years at local times of 4-5 and 15-17 h. We supplement the observations with results obtained from large-eddy simulations and through data assimilation by the UK spectral version of the LMD Mars Global Circulation Model. We previously investigated the depth of the daytime convective boundary layer (CBL) and its variations with surface elevation and surface properties. We are now examining unusual aspects of the temperature structure observed at night. Most important, predawn profiles in the Tharsis region contain an unexpected layer of neutral static stability at pressures of 200-300 Pa with a depth of 4-5 km. The mixed layer is bounded above by a midlevel temperature inversion and below by another strong inversion adjacent to the surface. The sharp temperature minimum at the base of the midlevel inversion suggests the presence of a thin water ice cloud layer, with the further implication that radiative cooling at cloud level can induce convective activity at lower altitudes. Conversely, nighttime profiles in Amazonis show no sign of a midlevel inversion or a detached mixed layer. These regional variations in the nighttime temperature structure appear to arise in part from large-scale variations in topography, which have several notable effects. First, the CBL is much deeper in the Tharsis region than in Amazonis, owing to a roughly 6-km difference in surface elevation. Second, large-eddy simulations show that daytime convection is not only deeper above Tharsis but also considerably more intense than it is in Amazonis. Finally, the daytime surface temperatures are comparable in the two regions, so that Tharsis acts as an elevated heat source throughout the CBL. These topographic effects are expected to enhance the vertical mixing of water vapor above elevated terrain, which might lead to the formation and regional confinement of nighttime clouds.

Quantifying the imprint of mesoscale and synoptic-scale atmospheric transport on total column carbon dioxide measurements

NASA Astrophysics Data System (ADS)

Torres, A. D.; Keppel-Aleks, G.; Doney, S. C.; Feng, S.; Lauvaux, T.; Fendrock, M. A.; Rheuben, J.

2017-12-01

Remote sensing instruments provide an unprecedented density of observations of the atmospheric CO2 column average mole fraction (denoted as XCO2), which can be used to constrain regional scale carbon fluxes. Inferring fluxes from XCO2 observations is challenging, as measurements and inversion methods are sensitive to not only the imprint local and large-scale fluxes, but also mesoscale and synoptic-scale atmospheric transport. Quantifying the fine-scale variability in XCO2 from mesoscale and synoptic-scale atmospheric transport will likely improve overall error estimates from flux inversions by improving estimates of representation errors that occur when XCO2 observations are compared to modeled XCO2 in relatively coarse transport models. Here, we utilize various statistical methods to quantify the imprint of atmospheric transport on XCO2 observations. We compare spatial variations along Orbiting Carbon Observatory (OCO-2) satellite tracks to temporal variations observed by the Total Column Carbon Observing Network (TCCON). We observe a coherent seasonal cycle of both within-day temporal and fine-scale spatial variability (of order 10 km) of XCO2 from these two datasets, suggestive of the imprint of mesoscale systems. To account for other potential sources of error in XCO2 retrieval, we compare observed temporal and spatial variations of XCO2 to high-resolution output from the Weather Research and Forecasting (WRF) model run at 9 km resolution. In both simulations and observations, the Northern hemisphere mid-latitude XCO2 showed peak variability during the growing season when atmospheric gradients are largest. These results are qualitatively consistent with our expectations of seasonal variations of the imprint of synoptic and mesoscale atmospheric transport on XCO2 observations; suggesting that these statistical methods could be sensitive to the imprint of atmospheric transport on XCO2 observations.

Malassezia arunalokei sp. nov., a Novel Yeast Species Isolated from Seborrheic Dermatitis Patients and Healthy Individuals from India

PubMed Central

Honnavar, Prasanna; Prasad, Gandham S.; Ghosh, Anup; Dogra, Sunil; Handa, Sanjeev

2016-01-01

The majority of species within the genus Malassezia are lipophilic yeasts that colonize the skin of warm-blooded animals. Two species, Malassezia globosa and Malassezia restricta, are implicated in the causation of seborrheic dermatitis/dandruff (SD/D). During our survey of SD/D cases, we isolated several species of Malassezia and noticed vast variations within a few lipid-dependent species. Variations observed in the phenotypic characteristics (colony morphology, absence of catalase activity, growth at 37°C, and precipitation surrounding wells containing Tween 20 or Cremophor EL) suggested the possible presence of a novel species. Sequence divergence observed in the internal transcribed spacer (ITS) region, the D1/D2 domain, and the intergenic spacer 1 (IGS1) region of rDNA and the TEF1 gene, PCR-restriction fragment length polymorphism (RFLP) analysis of the ITS2 region, and fluorescent amplified fragment length polymorphism analysis support the existence of a novel species. Based on phenotypic and molecular characterization of these strains, we propose a new species, namely, M. arunalokei sp. nov., and we designate NCCPF 127130 (= MTCC 12054 = CBS 13387) as the type strain. PMID:27147721

Malassezia arunalokei sp. nov., a Novel Yeast Species Isolated from Seborrheic Dermatitis Patients and Healthy Individuals from India.

PubMed

Honnavar, Prasanna; Prasad, Gandham S; Ghosh, Anup; Dogra, Sunil; Handa, Sanjeev; Rudramurthy, Shivaprakash M

2016-07-01

The majority of species within the genus Malassezia are lipophilic yeasts that colonize the skin of warm-blooded animals. Two species, Malassezia globosa and Malassezia restricta, are implicated in the causation of seborrheic dermatitis/dandruff (SD/D). During our survey of SD/D cases, we isolated several species of Malassezia and noticed vast variations within a few lipid-dependent species. Variations observed in the phenotypic characteristics (colony morphology, absence of catalase activity, growth at 37°C, and precipitation surrounding wells containing Tween 20 or Cremophor EL) suggested the possible presence of a novel species. Sequence divergence observed in the internal transcribed spacer (ITS) region, the D1/D2 domain, and the intergenic spacer 1 (IGS1) region of rDNA and the TEF1 gene, PCR-restriction fragment length polymorphism (RFLP) analysis of the ITS2 region, and fluorescent amplified fragment length polymorphism analysis support the existence of a novel species. Based on phenotypic and molecular characterization of these strains, we propose a new species, namely, M. arunalokei sp. nov., and we designate NCCPF 127130 (= MTCC 12054 = CBS 13387) as the type strain. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Long term ice sheet mass change rates and inter-annual variability from GRACE gravimetry.

NASA Astrophysics Data System (ADS)

Harig, C.

2017-12-01

The GRACE time series of gravimetry now stretches 15 years since its launch in 2002. Here we use Slepian functions to estimate the long term ice mass trends of Greenland, Antarctica, and several glaciated regions. The spatial representation shows multi-year to decadal regional shifts in accelerations, in agreement with increases in radar derived ice velocity. Interannual variations in ice mass are of particular interest since they can directly link changes in ice sheets to the drivers of change in the polar ocean and atmosphere. The spatial information retained in Slepian functions provides a tool to determine how this link varies in different regions within an ice sheet. We present GRACE observations of the 2013-2014 slowdown in mass loss of the Greenland ice sheet, which was concentrated in specific parts of the ice sheet and in certain months of the year. We also discuss estimating the relative importance of climate factors that control ice mass balance, as a function of location of the glacier/ice cap as well as the spatial variation within an ice sheet by comparing gravimetry with observations of surface air temperature, ocean temperature, etc. as well as model data from climate reanalysis products.

Interannual Tropical Rainfall Variability in General Circulation Model Simulations Associated with the Atmospheric Model Intercomparison Project.

NASA Astrophysics Data System (ADS)

Sperber, K. R.; Palmer, T. N.

1996-11-01

The interannual variability of rainfall over the Indian subcontinent, the African Sahel, and the Nordeste region of Brazil have been evaluated in 32 models for the period 1979-88 as part of the Atmospheric Model Intercomparison Project (AMIP). The interannual variations of Nordeste rainfall are the most readily captured, owing to the intimate link with Pacific and Atlantic sea surface temperatures. The precipitation variations over India and the Sahel are less well simulated. Additionally, an Indian monsoon wind shear index was calculated for each model. Evaluation of the interannual variability of a wind shear index over the summer monsoon region indicates that the models exhibit greater fidelity in capturing the large-scale dynamic fluctuations than the regional-scale rainfall variations. A rainfall/SST teleconnection quality control was used to objectively stratify model performance. Skill scores improved for those models that qualitatively simulated the observed rainfall/El Niño- Southern Oscillation SST correlation pattern. This subset of models also had a rainfall climatology that was in better agreement with observations, indicating a link between systematic model error and the ability to simulate interannual variations.A suite of six European Centre for Medium-Range Weather Forecasts (ECMWF) AMIP runs (differing only in their initial conditions) have also been examined. As observed, all-India rainfall was enhanced in 1988 relative to 1987 in each of these realizations. All-India rainfall variability during other years showed little or no predictability, possibly due to internal chaotic dynamics associated with intraseasonal monsoon fluctuations and/or unpredictable land surface process interactions. The interannual variations of Nordeste rainfall were best represented. The State University of New York at Albany/National Center for Atmospheric Research Genesis model was run in five initial condition realizations. In this model, the Nordeste rainfall variability was also best reproduced. However, for all regions the skill was less than that of the ECMWF model.The relationships of the all-India and Sahel rainfall/SST teleconnections with horizontal resolution, convection scheme closure, and numerics have been evaluated. Models with resolution T42 performed more poorly than lower-resolution models. The higher resolution models were predominantly spectral. At low resolution, spectral versus gridpoint numerics performed with nearly equal verisimilitude. At low resolution, moisture convergence closure was slightly more preferable than other convective closure techniques. At high resolution, the models that used moisture convergence closure performed very poorly, suggesting that moisture convergence may be problematic for models with horizontal resolution T42.

VARIATIONS OF THE 10 mum SILICATE FEATURES IN THE ACTIVELY ACCRETING T TAURI STARS: DG Tau AND XZ Tau

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bary, Jeffrey S.; Leisenring, Jarron M.; Skrutskie, Michael F., E-mail: jbary@colgate.ed, E-mail: jml2u@virginia.ed, E-mail: mfs4n@virginia.ed

2009-11-20

Using the Infrared Spectrograph aboard the Spitzer Space Telescope, we observed multiple epochs of 11 actively accreting T Tauri stars in the nearby Taurus-Auriga star-forming region. In total, 88 low-resolution mid-infrared spectra were collected over 1.5 years in Cycles 2 and 3. The results of this multi-epoch survey show that the 10 mum silicate complex in the spectra of two sources-DG Tau and XZ Tau-undergoes significant variations with the silicate feature growing both weaker and stronger over month- and year-long timescales. Shorter timescale variations on day- to week-long timescales were not detected within the measured flux errors. The time resolutionmore » coverage of this data set is inadequate for determining if the variations are periodic. Pure emission compositional models of the silicate complex in each epoch of the DG Tau and XZ Tau spectra provide poor fits to the observed silicate features. These results agree with those of previous groups that attempted to fit only single-epoch observations of these sources. Simple two-temperature, two-slab models with similar compositions successfully reproduce the observed variations in the silicate features. These models hint at a self-absorption origin of the diminution of the silicate complex instead of a compositional change in the population of emitting dust grains. We discuss several scenarios for producing such variability including disk shadowing, vertical mixing, variations in disk heating, and disk wind events associated with accretion outbursts.« less

Performance of ICTP's RegCM4 in Simulating the Rainfall Characteristics over the CORDEX-SEA Domain

NASA Astrophysics Data System (ADS)

Neng Liew, Ju; Tangang, Fredolin; Tieh Ngai, Sheau; Chung, Jing Xiang; Narisma, Gemma; Cruz, Faye Abigail; Phan Tan, Van; Thanh, Ngo-Duc; Santisirisomboon, Jerasron; Milindalekha, Jaruthat; Singhruck, Patama; Gunawan, Dodo; Satyaningsih, Ratna; Aldrian, Edvin

2015-04-01

The performance of the RegCM4 in simulating rainfall variations over the Southeast Asia regions was examined. Different combinations of six deep convective parameterization schemes, namely i) Grell scheme with Arakawa-Schubert closure assumption, ii) Grell scheme with Fritch-Chappel closure assumption, iii) Emanuel MIT scheme, iv) mixed scheme with Emanuel MIT scheme over the Ocean and the Grell scheme over the land, v) mixed scheme with Grell scheme over the land and Emanuel MIT scheme over the ocean and (vi) Kuo scheme, and three ocean flux treatments were tested. In order to account for uncertainties among the observation products, four different gridded rainfall products were used for comparison. The simulated climate is generally drier over the equatorial regions and slightly wetter over the mainland Indo-China compare to the observation. However, simulation with MIT cumulus scheme used over the land area consistently produces large amplitude of positive rainfall biases, although it simulates more realistic annual rainfall variations. The simulations are found less sensitive to treatment of ocean fluxes. Although the simulations produced the rainfall climatology well, all of them simulated much stronger interannual variability compare to that of the observed. Nevertheless, the time evolution of the inter-annual variations was well reproduced particularly over the eastern part of maritime continent. Over the mainland Southeast Asia (SEA), unrealistic rainfall anomalies processes were simulated. The lacking of summer season air-sea interaction results in strong oceanic forcings over the regions, leading to positive rainfall anomalies during years with warm ocean temperature anomalies. This incurs much stronger atmospheric forcings on the land surface processes compare to that of the observed. A score ranking system was designed to rank the simulations according to their performance in reproducing different aspects of rainfall characteristics. The result suggests that the simulation with Emanuel MIT convective scheme and BATs land surface scheme produces better collective performance compare to the rest of the simulations.

Inner Core Tomography Under Africa

NASA Astrophysics Data System (ADS)

Irving, J. C. E.

2014-12-01

Hemispherical structure in the inner core has been observed using both normal mode and body wave data, but the more regional scale properties of the inner core are still the subject of ongoing debate. The nature of the vertical boundary regions between the eastern and western hemispheres will be an important constraint on dynamical processes at work in the inner core. With limited data available, earlier inner core studies defined each boundary using one line of longitude, but this may not be a sufficient description for what could be one of the inner core's most heterogeneous regions. Here, I present a large, hand-picked dataset of PKPbc-PKPdf differential travel times which sample the inner core under Africa, where the proposed position of one hemisphere boundary is located. The dataset contains polar, intermediate and equatorial rays through the inner core, and the presence of crossing raypaths makes regional-scale tomography of the inner core feasible. I invert the data to find regional variations in inner core anisotropy under different parts of Africa, and present both anisotropy and voigt isotropic velocity variations of this important portion of the inner core.

Investigation of complex slow slip behavior along the Hikurangi subduction zone with earthquake simulator RSQSim

NASA Astrophysics Data System (ADS)

Colella, H.; Ellis, S. M.; Williams, C. A.

2015-12-01

The Hikurangi subduction zone (New Zealand) is one of many subudction zones that exhibit slow slip behavior. Geodetic observations along the Hikurangi subduction zone are unusual in that not only does the subduction zone exhibit periodic slow slip events at "typical" subduction-zone depths of 25-50 km along the southern part of the margin, but also much shallower depths of 8-15 km along the northern part of the margin. Furthermore, there is evidence for interplay between slow slip events at these different depth ranges (between the deep and shallow events) along the central part of the margin, and some of the slow slip behavior is observed along regions of the interface that were previously considered locked, which raises questions about the slip behavior of this region. This study employs the earthquake simulator, RSQSim, to explore variations in the effective normal stress (i.e., stress after the addition of pore fluid pressures) and the frictional instability necessary to generate the complex slow slip events observed along the Hikurangi margin. Preliminary results suggest that to generate slow slip events with similar recurrence intervals to those observed the effective normal stress (MPa) is 3x higher in the south than the north, 6-9MPa versus 2-3MPa, respectively. Results also suggest that, at a minimum, that some overlap along the central margin must exist between the slow slip sections in the north and south to reproduce the types of slip events observed along the Hikurangi subduction zone. To further validate the results from the simulations, Okada solutions for surface displacements will be compared to geodetic solution to more accurately constrain the areas in which slip behavior varies and the cause(s) for the variation(s).

Regional variations in the observed morphology and activity of martian linear gullies

NASA Astrophysics Data System (ADS)

Morales, Kimberly Marie; Diniega, Serina; Austria, Mia; Ochoa, Vincent; HiRISE Science and Instrument Team

2017-10-01

The formation mechanism for martian linear gullies has been much debated, because they have been suggested as possible evidence of liquid water on Mars. This class of dune gullies is defined by long (up to 2 km), narrow channels that are relatively uniform in width, and range in sinuosity index. Unlike other gullies on Earth and Mars that end in depositional aprons, linear gullies end in circular depressions referred to as terminal pits. This particular morphological difference, along with the difficulty of identifying a source of water to form these features, has led to several ‘dry’ hypotheses. Recent observations on the morphology, distribution, and present-day activity of linear gullies suggests that they could be formed by subliming blocks of seasonal CO2 ice (“dry ice”) sliding downslope on dune faces. In our study, we aimed to further constrain the possible mechanism(s) responsible for the formation of linear gullies by using HiRISE images to collect morphological data and track seasonal activity within three regions in the southern hemisphere-Hellespontus (~45°S, 40°E), Aonia Terra (~50°S, 290°E), and Jeans (~70°S, 155°E) over the last four Mars years. General similarities in these observations were reflective of the proposed formation process (sliding CO2 blocks) while differences were correlated with regional environmental conditions related to the latitude or general geologic setting. This presentation describes the observed regional differences in linear gully morphology and activity, and investigates how environmental factors such as surface properties and local levels of frost may explain these variations while still supporting the proposed model. Determining the formation mechanism that forms these martian features can improve our understanding of both the climatic and geological processes that shape the Martian surface.

Tropospheric ozone in the western Pacific Rim: Analysis of satellite and surface-based observations along with comprehensive 3-D model simulations

NASA Technical Reports Server (NTRS)

Young, Sun-Woo; Carmichael, Gregory R.

1994-01-01

Tropospheric ozone production and transport in mid-latitude eastern Asia is studied. Data analysis of surface-based ozone measurements in Japan and satellite-based tropospheric column measurements of the entire western Pacific Rim are combined with results from three-dimensional model simulations to investigate the diurnal, seasonal and long-term variations of ozone in this region. Surface ozone measurements from Japan show distinct seasonal variation with a spring peak and summer minimum. Satellite studies of the entire tropospheric column of ozone show high concentrations in both the spring and summer seasons. Finally, preliminary model simulation studies show good agreement with observed values.

Manipulating Si(100) at 5 K using qPlus frequency modulated atomic force microscopy: Role of defects and dynamics in the mechanical switching of atoms

NASA Astrophysics Data System (ADS)

Sweetman, A.; Jarvis, S.; Danza, R.; Bamidele, J.; Kantorovich, L.; Moriarty, P.

2011-08-01

We use small-amplitude qPlus frequency modulated atomic force microscopy (FM-AFM), at 5 K, to investigate the atomic-scale mechanical stability of the Si(100) surface. By operating at zero applied bias the effect of tunneling electrons is eliminated, demonstrating that surface manipulation can be performed by solely mechanical means. Striking differences in surface response are observed between different regions of the surface, most likely due to variations in strain associated with the presence of surface defects. We investigate the variation in local energy surface by ab initio simulation, and comment on the dynamics observed during force spectroscopy.

Ground-water/surface-water responses to global climate simulations, Santa Clara-Calleguas basin, Ventura County, California, 1950-93

USGS Publications Warehouse

Hanson, Randall T.; Dettinger, Michael D.

2005-01-01

Climate variations can play an important, if not always crucial, role in successful conjunctive management of ground water and surface water resources. This will require accurate accounting of the links between variations in climate, recharge, and withdrawal from the resource systems, accurate projection or predictions of the climate variations, and accurate simulation of the responses of the resource systems. To assess linkages and predictability of climate influences on conjunctive management, global climate model (GCM) simulated precipitation rates were used to estimate inflows and outflows from a regional ground water model (RGWM) of the coastal aquifers of the Santa Clara-Calleguas Basin at Ventura, California, for 1950 to 1993. Interannual to interdecadal time scales of the El Niño Southern Oscillation (ENSO) and Pacific Decadal Oscillation (PDO) climate variations are imparted to simulated precipitation variations in the Southern California area and are realistically imparted to the simulated ground water level variations through the climate-driven recharge (and discharge) variations. For example, the simulated average ground water level response at a key observation well in the basin to ENSO variations of tropical Pacific sea surface temperatures is 1.2 m/°C, compared to 0.9 m/°C in observations. This close agreement shows that the GCM-RGWM combination can translate global scale climate variations into realistic local ground water responses. Probability distributions of simulated ground water level excursions above a local water level threshold for potential seawater intrusion compare well to the corresponding distributions from observations and historical RGWM simulations, demonstrating the combination's potential usefulness for water management and planning. Thus the GCM-RGWM combination could be used for planning purposes and — when the GCM forecast skills are adequate — for near term predictions.

Ground water/surface water responses to global climate simulations, Santa Clara-Calleguas Basin, Ventura, California

USGS Publications Warehouse

Hanson, R.T.; Dettinger, M.D.

2005-01-01

Climate variations can play an important, if not always crucial, role in successful conjunctive management of ground water and surface water resources. This will require accurate accounting of the links between variations in climate, recharge, and withdrawal from the resource systems, accurate projection or predictions of the climate variations, and accurate simulation of the responses of the resource systems. To assess linkages and predictability of climate influences on conjunctive management, global climate model (GCM) simulated precipitation rates were used to estimate inflows and outflows from a regional ground water model (RGWM) of the coastal aquifers of the Santa ClaraCalleguas Basin at Ventura, California, for 1950 to 1993. Interannual to interdecadal time scales of the El Nin??o Southern Oscillation (ENSO) and Pacific Decadal Oscillation (PDO) climate variations are imparted to simulated precipitation variations in the Southern California area and are realistically imparted to the simulated ground water level variations through the climate-driven recharge (and discharge) variations. For example, the simulated average ground water level response at a key observation well in the basin to ENSO variations of tropical Pacific sea surface temperatures is 1.2 m/??C, compared to 0.9 m/??C in observations. This close agreement shows that the GCM-RGWM combination can translate global scale climate variations into realistic local ground water responses. Probability distributions of simulated ground water level excursions above a local water level threshold for potential seawater intrusion compare well to the corresponding distributions from observations and historical RGWM simulations, demonstrating the combination's potential usefulness for water management and planning. Thus the GCM-RGWM combination could be used for planning purposes and - when the GCM forecast skills are adequate - for near term predictions.

Multi-scale Drivers of Variations in Atmospheric Evaporative Demand Based on Observations and Physically-based Modeling

NASA Astrophysics Data System (ADS)

Peng, L.; Sheffield, J.; Li, D.

2015-12-01

Evapotranspiration (ET) is a key link between the availability of water resources and climate change and climate variability. Variability of ET has important environmental and socioeconomic implications for managing hydrological hazards, food and energy production. Although there have been many observational and modeling studies of ET, how ET has varied and the drivers of the variations at different temporal scales remain elusive. Much of the uncertainty comes from the atmospheric evaporative demand (AED), which is the combined effect of radiative and aerodynamic controls. The inconsistencies among modeled AED estimates and the limited observational data may originate from multiple sources including the limited time span and uncertainties in the data. To fully investigate and untangle the intertwined drivers of AED, we present a spectrum analysis to identify key controls of AED across multiple temporal scales. We use long-term records of observed pan evaporation for 1961-2006 from 317 weather stations across China and physically-based model estimates of potential evapotranspiration (PET). The model estimates are based on surface meteorology and radiation derived from reanalysis, satellite retrievals and station data. Our analyses show that temperature plays a dominant role in regulating variability of AED at the inter-annual scale. At the monthly and seasonal scales, the primary control of AED shifts from radiation in humid regions to humidity in dry regions. Unlike many studies focusing on the spatial pattern of ET drivers based on a traditional supply and demand framework, this study underlines the importance of temporal scales when discussing controls of ET variations.

Anomalous Ionospheric signatures observed at low-mid latitude Indian station Delhi prior to earthquake events during the year 2015 to early 2016.

NASA Astrophysics Data System (ADS)

Upadhayaya, A. K.; Gupta, S.; Kotnala, R. K.

2017-12-01

Five major earthquake events measuring greater than six on Richter scale (M>6) that occurred during the year 2015 to early 2016, affecting Indian region ionosphere, are analyzed using F2 layer critical parameters (foF2, hmF2) obtained using Digisonde from a low-mid latitude Indian station, Delhi (28.6°N, 77.2°E, 19.2°N Geomagnetic latitude, 42.4°N Dip). Normal day-to-day variability occurring in ionosphere is segregated by calculating F2 layer critical frequency and peak height variations (ΔfoF2, ΔhmF2) from the normal quiet time behavior. We find that the ionospheric F2 region across Delhi by and large shows some significant perturbations 3-4 days prior to these earthquake events, resulting in a large peak electron density variation of 200%. These observed perturbations indicate towards a possibility of seismo-ionospheric coupling as the solar and geomagnetic indices were normally quiet and stable during the period of these events. It was also observed that the precursory effect of earthquake was predominantly seen even outside the earthquake preparation zone, as given by Dobrovolsky et al. [1979]. The thermosphere neutral composition (O/N2) as observed by GUVI [Christensen et al., 2003], across Delhi, during these earthquake events does not show any marked variation. Further, the effect of earthquake events on ionospheric peak electron density is compared to the lower atmosphere meteorological phenomenon of 2015 Sudden Stratospheric Warming event and are found to be comparable.

Photometric Properties of Network and Faculae Derived from HMI Data Compensated for Scattered Light

NASA Astrophysics Data System (ADS)

Criscuoli, Serena; Norton, Aimee; Whitney, Taylor

2017-10-01

We report on the photometric properties of faculae and network, as observed in full-disk, scattered-light-corrected images from the Helioseismic Magnetic Imager. We use a Lucy-Richardson deconvolution routine that corrects an image in less than one second. Faculae are distinguished from network through proximity to active regions. This is the first report that full-disk observations, including center-to-limb variations, reproduce the photometric properties of faculae and network observed previously only in sub-arcsecond-resolution; small field-of-view studies, I.e. that network, as defined by distance from active regions, exhibit higher photometric contrasts. Specifically, for magnetic flux values larger than approximately 300 G, the network is brighter than faculae and the contrast differences increase toward the limb, where the network contrast is about twice the facular one. For lower magnetic flux values, network appear darker than faculae. Contrary to reports from previous full-disk observations, we also found that network exhibits a higher center-to-limb variation. Our results are in agreement with reports from simulations that indicate magnetic flux alone is a poor proxy of the photometric properties of magnetic features. We estimate that the contribution of faculae and network to Total Solar Irradiance variability of the current Cycle 24 is overestimated by at least 11%, due to the photometric properties of network and faculae not being recognized as different. This estimate is specific to the method employed in this study to reconstruct irradiance variations, so caution should be paid when extending it to other techniques.

Spatial and Temporal Analysis of Sea Surface Salinity Using Satellite Imagery in Gulf of Mexico

NASA Astrophysics Data System (ADS)

Rajabi, S.; Hasanlou, M.; Safari, A. R.

2017-09-01

The recent development of satellite sea surface salinity (SSS) observations has enabled us to analyse SSS variations with high spatiotemporal resolution. In this regards, The Level3-version4 data observed by Aquarius are used to examine the variability of SSS in Gulf of Mexico for the 2012-2014 time periods. The highest SSS value occurred in April 2013 with the value of 36.72 psu while the lowest value (35.91 psu) was observed in July 2014. Based on the monthly distribution maps which will be demonstrated in the literature, it was observed that east part of the region has lower salinity values than the west part for all months mainly because of the currents which originate from low saline waters of the Caribbean Sea and furthermore the eastward currents like loop current. Also the minimum amounts of salinity occur in coastal waters where the river runoffs make fresh the high saline waters. Our next goal here is to study the patterns of sea surface temperature (SST), chlorophyll-a (CHLa) and fresh water flux (FWF) and examine the contributions of them to SSS variations. So by computing correlation coefficients, the values obtained for SST, FWF and CHLa are 0.7, 0.22 and 0.01 respectively which indicated high correlation of SST on SSS variations. Also by considering the spatial distribution based on the annual means, it found that there is a relationship between the SSS, SST, CHLa and the latitude in the study region which can be interpreted by developing a mathematical model.

Photometric Properties of Network and Faculae Derived from HMI Data Compensated for Scattered Light

DOE Office of Scientific and Technical Information (OSTI.GOV)

Criscuoli, Serena; Whitney, Taylor; Norton, Aimee

We report on the photometric properties of faculae and network, as observed in full-disk, scattered-light-corrected images from the Helioseismic Magnetic Imager. We use a Lucy–Richardson deconvolution routine that corrects an image in less than one second. Faculae are distinguished from network through proximity to active regions. This is the first report that full-disk observations, including center-to-limb variations, reproduce the photometric properties of faculae and network observed previously only in sub-arcsecond-resolution; small field-of-view studies, i.e. that network, as defined by distance from active regions, exhibit higher photometric contrasts. Specifically, for magnetic flux values larger than approximately 300 G, the network ismore » brighter than faculae and the contrast differences increase toward the limb, where the network contrast is about twice the facular one. For lower magnetic flux values, network appear darker than faculae. Contrary to reports from previous full-disk observations, we also found that network exhibits a higher center-to-limb variation. Our results are in agreement with reports from simulations that indicate magnetic flux alone is a poor proxy of the photometric properties of magnetic features. We estimate that the contribution of faculae and network to Total Solar Irradiance variability of the current Cycle 24 is overestimated by at least 11%, due to the photometric properties of network and faculae not being recognized as different. This estimate is specific to the method employed in this study to reconstruct irradiance variations, so caution should be paid when extending it to other techniques.« less

Analysis of Co-spatial UV-Optical STIS Spectra of Planetary Nebulae From HST Cycle 19 GO 12600

NASA Astrophysics Data System (ADS)

Miller, Timothy R.; Henry, Richard B. C.; Dufour, Reginald J.; Kwitter, Karen B.; Shaw, Richard A.; Balick, Bruce; Corradi, Romano

2015-01-01

We present an analysis of five spatially resolved planetary nebulae (PNe), NGC 5315, NGC 5882, NGC 7662, IC 2165, and IC 3568, from observations in the Cycle 19 program GO 12600 using HST STIS. Details of the observations and data are presented in the poster by Dufour et al. in this session. These five observations cover the wavelength range 1150-10,270 Å with 0.2 and 0.5 arcsec wide slits, and are co-spatial to 0.1 arcsec along a 25 arcsec length across each nebula. This unprecedented resolution in both wavelength and spatial coverage enabled detailed studies of physical conditions and abundances from UV line ion emissions (compared to optical lines). We first analyzed the low- and moderate-resolution UV emission lines of carbon using the resolved lines of C III] 1906.68 and 1908.73, which yielded a direct measurement of the density within the volume occupied by doubly-ionized carbon and other similar co-spatial ions. Next, each PN spectrum was divided into spatial sub-regions in order to assess inferred density variations among the sub-regions along the entire slit. Variations in electron temperature and chemical abundances were also probed. Lastly, these nebulae were modeled in detail with the photoionization code CLOUDY. This modeling tested different density profiles in order to reproduce the observed density variations and temperature fluctuations, and constrain central star parameters. We gratefully acknowledge generous support from NASA through grants related to the Cycle 19 program GO 12600, as well as from the University of Oklahoma.

High-Resolution Seismic Velocity and Attenuation Models of the Caucasus-Caspian Region

DTIC Science & Technology

2009-09-30

region is part of the Alpine-Himalayan collision belt and is an area of complex structure accompanied by large variations in seismic wave velocities...velocity structure is developed using teleseismic receiver functions and surface waves. Joint inversion of surface wave group dispersion curves...Caucasus and the thinnest is in the Arabian Plate. Thin crust is also observed near the Caspian. The lithospheric mantle in the Greater Caucasus and the

Models of the Jovian Ring and Comparisions With Observations

NASA Astrophysics Data System (ADS)

Juhasz, A.; Horanyi, M.

2008-12-01

A number of in situ and remote sensing observations of the Jovian ring system exist so we can now combine observations from Voyager, Pioneer, Galileo and Cassini, as well as ground based and HST measurements. In this presentation we will compare this large body of observations to available theoretical models of the dust dynamics in the Jovian ring. Common to all models (Burns et al., 1985, 2001 ; Horanyi et al.,1996, 2004) is the basic idea that dust is being continuously produced due to micro-meteoroid bombardment of the moons in this region. Also, the spatial distribution of dust in the halo region inward of the main ring is generally accepted to be a consequence of electrodynamic perturbations acting on small charged dust particles. However, in the suggested theoretical models the time scale for orbital evolution is drastically differ. Burns et al. argues, that in the main ring, dust particles evolve inward very slowly due to Poynting-Robertson drag. A typical micron sized grain is predicted to orbit Jupiter for 104 years before crashing into the atmosphere of Jupiter. Horanyi et al. argues that the radial transport is due to resonant charge variations, dictated by the plasma density distribution. In this model grains are transported on a time scale that is orders of magnitude shorter than predicted by PR drag. Here we use both of these models to generate brightness distributions and predict optical depth distributions for same geometries and wavelengths as that of the observations. Quantitative comparisons of the modeled and the real observations lead us to the conclusion that the dust transport in ring/halo region at Jupiter is mainly due to resonant charge variation.

1D Atmosphere Models from Inversion of Fe i 630 nm Observations with an Application to Solar Irradiance Studies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cristaldi, Alice; Ermolli, Ilaria, E-mail: alice.cristaldi@oaroma.inaf.it

Present-day semi-empirical models of solar irradiance (SI) variations reconstruct SI changes measured on timescales greater than a day by using spectra computed in one dimensional atmosphere models (1D models), which are representative of various solar surface features. Various recent studies have pointed out, however, that the spectra synthesized in 1D models do not reflect the radiative emission of the inhomogenous atmosphere revealed by high-resolution solar observations. We aimed to derive observation-based atmospheres from such observations and test their accuracy for SI estimates. We analyzed spectropolarimetric data of the Fe i 630 nm line pair in photospheric regions that are representativemore » of the granular quiet-Sun pattern (QS) and of small- and large-scale magnetic features, both bright and dark with respect to the QS. The data were taken on 2011 August 6, with the CRisp Imaging Spectropolarimeter at the Swedish Solar Telescope, under excellent seeing conditions. We derived atmosphere models of the observed regions from data inversion with the SIR code. We studied the sensitivity of results to spatial resolution and temporal evolution, and discuss the obtained atmospheres with respect to several 1D models. The atmospheres derived from our study agree well with most of the 1D models we compare our results with, both qualitatively and quantitatively (within 10%), except for pore regions. Spectral synthesis computations of the atmosphere obtained from the QS observations return an SI between 400 and 2400 nm that agrees, on average, within 2.2% with standard reference measurements, and within −0.14% with the SI computed on the QS atmosphere employed by the most advanced semi-empirical model of SI variations.« less

Observations of 85. cap alpha. recombination lines from M16

DOE Office of Scientific and Technical Information (OSTI.GOV)

Higgs, L.A.; Doherty, L.H.; MacLeod, J.M.

1979-01-01

Hydrogen and helium recombination-line observations have been made at eight positions in M16. These observations are compatible with a two-component model of the ionized gas, one component being an extended low-excitation region, the other being a higher-excitation region (with the helium ionized) at a radial velocity about 10 km s/sup -1/ greater than the mean velocity of the first component. The observed radial-velocity variations in the first component appear to be related to streaming motions from ionization fronts. The helium line emission is at a velocity comparable to that of the hottest exciting stars. The continuum radio emission is verymore » low considering the number of O stars in the nebula, indicating that it is probably density bounded.« less

TEC Longitude Difference Using GIMS and the IRI Model

NASA Astrophysics Data System (ADS)

Natali, Maria Paula; Meza, Amalia Margarita; Mendoza, Gastón

2016-07-01

The main geomagnetic field declination has a global distribution with positive and negative values showing maximum east-west differences over North America and Oceania and minimum differences over America and Asia. Several authors study one or more of these regions using TEC data derived from GNSS observations to describe variations in TEC. They reported a pronounced longitudinal variation respect to zero magnetic declination. One of the important factors that cause the longitude difference at mid-latitude is a combined effect of the longitude variations of magnetic declination and the variations of the zonal thermospheric winds with local time. We propose to study this effect using Global Ionospheric Maps (GIMs) and the respective TEC values generated from the International Reference Ionospheric (IRI) model, during a solar cycle, applying Principal Component Analysis (PCA). Our works is focused over different local times and regions at mid-latitude. PCA involves a mathematical procedure that transforms a number of correlated variables into a number of uncorrelated variables using the data itself. The spatial structure of the ionosphere variability and its temporal evolution, together are called modes, and there are ordered according to their percentage of the variability of data from highest to lowest. In this analysis the first mode has more than the 90 % of the variability, representing the nominal behavior of the ionosphere, and the second and third modes are the more important for our analysis, because they show the strong longitudinal variation in the different regions using either GIMs or the IRI model.

Regional magnetic anomaly constraints on continental breakup

DOE Office of Scientific and Technical Information (OSTI.GOV)

von Frese, R.R.B.; Hinze, W.J.; Olivier, R.

1986-01-01

Continental lithosphere magnetic anomalies mapped by the Magsat satellite are related to tectonic features associated with regional compositional variations of the crust and upper mantle and crustal thickness and thermal perturbations. These continental-scale anomaly patterns when corrected for varying observation elevation and the global change in the direction and intensity of the geomagnetic field show remarkable correlation of regional lithospheric magnetic sources across rifted continental margins when plotted on a reconstruction of Pangea. Accordingly, these anomalies provide new and fundamental constraints on the geologic evolution and dynamics of the continents and oceans.

Real-world geographic variations in the use of cardiac implantable electronic devices - The PANORAMA 2 observational cohort study.

PubMed

Bastian, Dirk; Ebrahim, Iftikhar O; Chen, Ju-Yi; Chen, Mien-Cheng; Huang, Dejia; Huang, Jin-Long; Kuznetsov, Vadim A; Maus, Bärbel; Naik, Ajay M; Verhees, Koen J P; Fagih, Ahmed R Al

2018-06-13

Currently, several geographies around the world remain underrepresented in medical device trials. The PANORAMA 2 study was designed to assess contemporary region-specific differences in clinical practice patterns of patients with cardiac implantable electronic devices (CIEDs). In this prospective, multicenter, observational, multi-national study, baseline and implant data of 4,706 patients receiving Medtronic CIEDs (either de novo device implants, replacements, or upgrades) were analyzed, consisting of: 54% implantable pulse generators (IPGs), 20.3% implantable cardiac defibrillators (ICDs), 15% cardiac resynchronization therapy defibrillators (CRT-Ds), 5.1% cardiac resynchronization therapy pacemakers (CRT-Ps), from 117 hospitals in 23 countries across 4 geographical regions between 2012 and 2016. For all device types, in all regions, there were less females than males enrolled, and women were less likely to have ischemic cardiomyopathy. Implant procedure duration differed significantly across the geographies for all device types. Subjects from emerging countries, women and older patients were less likely to receive a magnetic resonance imaging (MRI)-compatible device. Defibrillation testing differed significantly between the regions. European patients had the highest rates of atrial fibrillation (AF), and the lowest number of implanted single-chamber IPGs. Evaluation of stroke history suggested that the general embolic risk is more strongly associated with stroke than AF. We provide comprehensive descriptive data on patients receiving Medtronic CIEDs from several geographies, some of which are understudied in randomized controlled trials (RCTs). We found significant variations in patient characteristics. Several medical decisions appear to be affected by socioeconomic factors. Long-term follow-up data will help evaluate if these variations require adjustments to outcome expectations. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

The IMF in extreme star-forming environments: Searching for variations vs. initial conditions

NASA Astrophysics Data System (ADS)

Andersen, Morten; Meyer, M. R.; Greissl, J.; Oppenheimer, B. D.; Kenworthy, M. A.; McCarthy, D. W.; Zinnecker, H.

Any predictive theory of star formation must explain observed variations (or lack thereof) in the initial mass function. Recent work suggests that we might expect quantitative variations in the IMF as a function of metallicity (Larson 2005) or magnetic field strength (Shu et al. 2004). We summarize results from several on-going studies attempting to constrain the ratio of high to low mass stars, as well as stars to sub- stellar objects, in a variety of different environments, all containing high mass stars.First, we examine the ratio of stars to sub-stellar objects in the nearby Mon R2 region utilizing NICMOS/HST data. We compare our results to the IMF by Kroupa (2002) and to the observed ratios for IC 348 and Orion. Second, we present preliminary results for the ratio of high to low mass stars in W51, the most luminous HII region in the galaxy. Based on ground-based multi-colour images of the cluster obtained with the MMT adaptive optics system, we derive a lower limit to the ratio of high-mass to low-mass stars and compare it to the ratios for nearby clusters. Finally, we present the derived IMF for the R136 region in the LMC where the metallicity is 1/4 solar using HST/NICMOS data. We find that the IMF is consistent with that characterizing the field (Chabrier 2003), as well as nearby star-forming regions, down to 1.0 M_⊙ outside 2 pc. Whereas the results for both Mon R2 and R136 are consistent with the nearby clusters, the ratio of high to low mass stars in W51 tentatively indicates a lack of low-mass objects.

Lake carbonate-δ18 records from the Yukon Territory, Canada: Little Ice Age moisture variability and patterns

USGS Publications Warehouse

Anderson, Lesleigh; Finney, Bruce P.; Shapley, Mark D.

2011-01-01

A 1000-yr history of climate change in the central Yukon Territory, Canada, is inferred from sediment composition and isotope geochemistry from small, groundwater fed, Seven Mile Lake. Recent observations of lake-water δ18O, lake level, river discharge, and climate variations, suggest that changes in regional effective moisture (precipitation minus evaporation) are reflected by the lake’s hydrologic balance. The observations indicate that the lake is currently 18O-enriched by summer evaporation and that during years of increased precipitation, when groundwater inflow rates to the lake increase, lake-water δ18O values decrease. Past lake-water δ18O values are inferred from oxygen isotope ratios of fine-grained sedimentary endogenic carbonate. Variations in carbonate δ18O, supplemented by those in carbonate and organic δ13C, C/N ratios, and organic carbon, carbonate and biogenic silica accumulation rates, document changes in effective moisture at decadal time scales during the early Little Ice Age period to present. Results indicate that between ∼AD 1000 and 1600, effective moisture was higher than today. A shift to more arid climate conditions occurred after ∼AD 1650. The 19th and 20th centuries have been the driest of the past millennium. Temporal variations correspond with inferred shifts in summer evaporation from Marcella Lake δ18O, a similarly small, stratified, alkaline lake located ∼250 km to the southwest, suggesting that the combined reconstructions accurately document the regional paleoclimate of the east-central interior. Comparison with regional glacial activity suggests differing regional moisture patterns during early and late Little Ice Age advances.

Hydration of marginal basins and compositional variations within the continental lithospheric mantle inferred from a new global model of shear and compressional velocity

NASA Astrophysics Data System (ADS)

Tesoniero, Andrea; Auer, Ludwig; Boschi, Lapo; Cammarano, Fabio

2015-11-01

We present a new global model of shear and compressional wave speeds for the entire mantle, partly based on the data set employed for the shear velocity model savani. We invert Rayleigh and Love surface waves up to the sixth overtone in combination with major P and S body wave phases. Mineral physics data on the isotropic δlnVS/δlnVP ratio are taken into account in the form of a regularization constraint. The relationship between VP and VS that we observe in the top 300 km of the mantle has important thermochemical implications. Back-arc basins in the Western Pacific are characterized by large VP/VS and not extremely low VS at ˜150 km depth, consistently with presence of water. Most pronounced anomalies are located in the Sea of Japan, in the back-arc region of the Philippine Sea, and in the South China Sea. Our results indicate the effectiveness of slab-related processes to hydrate the mantle and suggest an important role of Pacific plate subduction also for the evolution of the South China Sea. We detect lateral variations in composition within the continental lithospheric mantle. Regions that have been subjected to rifting, collisions, and flood basalt events are underlain by relatively large VP/VS ratio compared to undeformed Precambrian regions, consistently with a lower degree of chemical depletion. Compositional variations are also observed in deep lithosphere. At ˜200 km depth, mantle beneath Australia and African cratons has comparable positive VS anomalies with other continental regions, but VP is ˜1% higher.

Interannual Variation in Offshore Advection of Amazon-Orinoco Plume Waters: Observations, Forcing Mechanisms, and Impacts

NASA Astrophysics Data System (ADS)

Fournier, S.; Vandemark, D.; Gaultier, L.; Lee, T.; Jonsson, B.; Gierach, M. M.

2017-11-01

This study investigates sea surface salinity (SSS) and sea surface temperature (SST) variations in the tropical Atlantic east of the Lesser Antilles, a region where freshwater advection from the Amazon and Orinoco Rivers, may potentially impact air-sea interaction. Observations are used to document later-summer variability and evaluate offshore riverine transport from 2010 to 2014. During this period, the largest difference in plume-affected areas, defined as the extent covered by SSS lower than 35.5 pss, is found between 2011 and 2014. Plume waters covered 92% of the study region in 2011 and 60% in 2014, with the average SSS in the study region being 2 pss lower in 2011. Lagrangian particle tracking based on satellite-derived ocean currents is used to diagnose the impact of the river plumes on SSS and SST from 2010 to 2014. Northward freshwater flux in summer 2014 was significantly weaker than fluxes in 2010-2013. This difference is not due to interannual discharge variability, but to significant changes in eddy-driven transport and cross-shore winds. In particular, the stronger cross-shore wind in May 2014 restricted offshore freshwater flow and lead to a smaller plume-affected area. Persistent SST gradients are often found near the plume edge, which may have implications for ocean-atmosphere coupling associated with atmospheric convection. SST in the study region was 1°C higher in 2010 compared to other years, and is related to basin-scale ocean-atmosphere processes. Interannual variation in Amazon advective pathways and the associated SSS changes are also influenced by changes in the ITCZ position between 2011 and 2014.

Lake carbonate-δ 18O records from the Yukon Territory, Canada: Little Ice Age moisture variability and patterns

NASA Astrophysics Data System (ADS)

Anderson, Lesleigh; Finney, Bruce P.; Shapley, Mark D.

2011-04-01

A 1000-yr history of climate change in the central Yukon Territory, Canada, is inferred from sediment composition and isotope geochemistry from small, groundwater fed, Seven Mile Lake. Recent observations of lake-water δ 18O, lake level, river discharge, and climate variations, suggest that changes in regional effective moisture (precipitation minus evaporation) are reflected by the lake's hydrologic balance. The observations indicate that the lake is currently 18O-enriched by summer evaporation and that during years of increased precipitation, when groundwater inflow rates to the lake increase, lake-water δ 18O values decrease. Past lake-water δ 18O values are inferred from oxygen isotope ratios of fine-grained sedimentary endogenic carbonate. Variations in carbonate δ 18O, supplemented by those in carbonate and organic δ 13C, C/N ratios, and organic carbon, carbonate and biogenic silica accumulation rates, document changes in effective moisture at decadal time scales during the early Little Ice Age period to present. Results indicate that between ˜AD 1000 and 1600, effective moisture was higher than today. A shift to more arid climate conditions occurred after ˜AD 1650. The 19th and 20th centuries have been the driest of the past millennium. Temporal variations correspond with inferred shifts in summer evaporation from Marcella Lake δ 18O, a similarly small, stratified, alkaline lake located ˜250 km to the southwest, suggesting that the combined reconstructions accurately document the regional paleoclimate of the east-central interior. Comparison with regional glacial activity suggests differing regional moisture patterns during early and late Little Ice Age advances.

The decadal-scale variation of the South Asian summer monsoon onset and its connection with the PDO

NASA Astrophysics Data System (ADS)

Watanabe, T.; Yamazaki, K.

2013-12-01

The summer Asian monsoon shows the abrupt increase of precipitation on the onset phase. It is an interesting and important problem when the summer monsoon onset occurs because natural resources, such as water and renewable energy agricultural product, are influenced by the variation of the summer Asian monsoon. Some researchers suggested the advance of the Asian summer monsoon onset in recent decades. We investigated the variation of the Asian monsoon onset using the long-term onset data over Kerala, a state in the southwest region of India, for 1948-2011. We discuss three main questions: 1) how is the variation of the monsoon onset date in the long-term period, 2) how the variation of the onset date is related to variations of atmospheric circulation and SST, and 3) what is the mechanism of such variation. Our main method is composite analysis using monthly-mean data. Though the onset date over Kerala shows the trend toward the early onset in recent three decades, such a trend is not observed in the whole period. It is noteworthy that the onset over Kerala shows the interannual variation on a multi-decadal scale. As regards the early onset years of Kerala, the summer monsoon onset is early over the following regions: the region from the southern Arabian Sea to southwestern India, the region from the southern Bay of Bengal to the Indochina Peninsula and the western North Pacific Ocean. On the other hand, the onset is late over southern China, Taiwan and the northern Philippine Sea. In early onset years of Kerala, the sea surface temperature over the northern Pacific Ocean is very similar to the negative PDO. The stationary wave train related with the negative PDO reaches into the Central Asia region, generates warm anomaly there and hence intensifies the land-sea thermal contrast there, which promotes the summer monsoon onset over South and Southeast Asia. Though the correlation between the onset over Kerala and the PDO is weak before 1976, it becomes high after 1976. The change in the correlation seems to be related to the change of the wave train path. The wave train which propagates from the northern Pacific Ocean to the western Russia can propagate southwards and southeastwards more easily in the period of 1976-2002 than the period of 1958-1975.

Characterization of genetic sequence variation of 58 STR loci in four major population groups.

PubMed

Novroski, Nicole M M; King, Jonathan L; Churchill, Jennifer D; Seah, Lay Hong; Budowle, Bruce

2016-11-01

Massively parallel sequencing (MPS) can identify sequence variation within short tandem repeat (STR) alleles as well as their nominal allele lengths that traditionally have been obtained by capillary electrophoresis. Using the MiSeq FGx Forensic Genomics System (Illumina), STRait Razor, and in-house excel workbooks, genetic variation was characterized within STR repeat and flanking regions of 27 autosomal, 7 X-chromosome and 24 Y-chromosome STR markers in 777 unrelated individuals from four population groups. Seven hundred and forty six autosomal, 227 X-chromosome, and 324 Y-chromosome STR alleles were identified by sequence compared with 357 autosomal, 107 X-chromosome, and 189 Y-chromosome STR alleles that were identified by length. Within the observed sequence variation, 227 autosomal, 156 X-chromosome, and 112 Y-chromosome novel alleles were identified and described. One hundred and seventy six autosomal, 123 X-chromosome, and 93 Y-chromosome sequence variants resided within STR repeat regions, and 86 autosomal, 39 X-chromosome, and 20 Y-chromosome variants were located in STR flanking regions. Three markers, D18S51, DXS10135, and DYS385a-b had 1, 4, and 1 alleles, respectively, which contained both a novel repeat region variant and a flanking sequence variant in the same nucleotide sequence. There were 50 markers that demonstrated a relative increase in diversity with the variant sequence alleles compared with those of traditional nominal length alleles. These population data illustrate the genetic variation that exists in the commonly used STR markers in the selected population samples and provide allele frequencies for statistical calculations related to STR profiling with MPS data. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Segmental Duplications and Copy-Number Variation in the Human Genome

PubMed Central

Sharp, Andrew J. ; Locke, Devin P. ; McGrath, Sean D. ; Cheng, Ze ; Bailey, Jeffrey A. ; Vallente, Rhea U. ; Pertz, Lisa M. ; Clark, Royden A. ; Schwartz, Stuart ; Segraves, Rick ; Oseroff, Vanessa V. ; Albertson, Donna G. ; Pinkel, Daniel ; Eichler, Evan E. 

2005-01-01

The human genome contains numerous blocks of highly homologous duplicated sequence. This higher-order architecture provides a substrate for recombination and recurrent chromosomal rearrangement associated with genomic disease. However, an assessment of the role of segmental duplications in normal variation has not yet been made. On the basis of the duplication architecture of the human genome, we defined a set of 130 potential rearrangement hotspots and constructed a targeted bacterial artificial chromosome (BAC) microarray (with 2,194 BACs) to assess copy-number variation in these regions by array comparative genomic hybridization. Using our segmental duplication BAC microarray, we screened a panel of 47 normal individuals, who represented populations from four continents, and we identified 119 regions of copy-number polymorphism (CNP), 73 of which were previously unreported. We observed an equal frequency of duplications and deletions, as well as a 4-fold enrichment of CNPs within hotspot regions, compared with control BACs (P < .000001), which suggests that segmental duplications are a major catalyst of large-scale variation in the human genome. Importantly, segmental duplications themselves were also significantly enriched >4-fold within regions of CNP. Almost without exception, CNPs were not confined to a single population, suggesting that these either are recurrent events, having occurred independently in multiple founders, or were present in early human populations. Our study demonstrates that segmental duplications define hotspots of chromosomal rearrangement, likely acting as mediators of normal variation as well as genomic disease, and it suggests that the consideration of genomic architecture can significantly improve the ascertainment of large-scale rearrangements. Our specialized segmental duplication BAC microarray and associated database of structural polymorphisms will provide an important resource for the future characterization of human genomic disorders. PMID:15918152

The Spatiotemporal Structure of 20th Century Climate Variations in Observations and Reanalyses. Part 1; Long-term Trend

NASA Technical Reports Server (NTRS)

Chen, Junye; DelGenio, Anthony D.; Carlson, Barbara e.; Bosilovich, Michael G.

2007-01-01

The dominant interannual El Nino-Southern Oscillation phenomenon (ENSO) and the short length of climate observation records make it difficult to study long-term climate variations in the spatiotemporal domain. Based on the fact that the ENS0 signal spreads to remote regions and induces delayed climate variation through atmospheric teleconnections, we develop an ENSO-removal method through which the ENS0 signal can be approximately removed at the grid box level from the spatiotemporal field of a climate parameter. After this signal is removed, long-term climate variations, namely, the global warming trend (GW) and the Pacific pan-decadal variability (PDV), are isolated at middle and low latitudes in the climate parameter fields from observed and reanalyses datasets. Except for known GW characteristics, the warming that occurs in the Pacific basin (approximately 0.4K in the 2oth century) is much weaker than in surrounding regions and the other two ocean basins (approximately 0.8K). The modest warming in the Pacific basin is likely due to its dynamic nature on the interannual and decadal time scales and/or the leakage of upper ocean water through the Indonesian Throughflow. Based on NCEP/NCAR and ERA-40 reanalyses, a comprehensive atmospheric structure associated with GW is given. Significant discrepancies exist between the two datasets, especially in the tightly coupled dynamic and water vapor fields. The dynamic field based on NCEP/NCAR reanalysis, which shows a change in the Walker Circulation, is consistent with the GW change in the surface temperature field. However, intensification in the Hadley Circulation is associated with GW trend in the ERA-40 reanalysis.

MUSE observations of M87: radial gradients for the stellar initial-mass function and the abundance of Sodium

NASA Astrophysics Data System (ADS)

Sarzi, Marc; Spiniello, Chiara; Barbera, Francesco La; Krajnović, Davor; Bosch, Remco van den

2018-05-01

Based on MUSE integral-field data we present evidence for a radial variation at the low-mass end of the stellar initial-mass function (IMF) in the central regions of the giant early-type galaxy NGC 4486 (M87). We used state-of-the-art stellar population models and the observed strength of various IMF-sensitive absorption-line features to solve for the best low-mass tapered "bimodal" form of the IMF, while accounting also for variations in stellar metallicity, the overall α-elements abundance and the abundance of individual elements such as Ti, O, Na and Ca. Our analysis reveals a strong negative IMF gradient corresponding to an exceeding fraction of low-mass stars compared to the case of the Milky Way toward the center of M87, which drops to nearly Milky-way levels by 0.4 Re. Such IMF variations correspond to over a factor two increase in stellar mass-to-light M/L ratio compared to the case of a Milky-way IMF, consistent with independent constraints on M/L radial variations in M87 from dynamical models. We also looked into the abundance of Sodium in M87, which turned up to be super-Solar over the entire radial range of our MUSE observations and to exhibit a considerable negative gradient. These findings suggest an additional role of metallicity in boosting the Na-yields in the central, metal-rich regions of M87 during its early and brief star-formation history. Our work adds M87 to the few objects that presently have radial constraints on their IMF or [Na/Fe] abundance, while also illustrating the accuracy that MUSE could bring to this kind of investigations.

Modeling Host Genetic Regulation of Influenza Pathogenesis in the Collaborative Cross

PubMed Central

Ferris, Martin T.; Aylor, David L.; Bottomly, Daniel; Whitmore, Alan C.; Aicher, Lauri D.; Bell, Timothy A.; Bradel-Tretheway, Birgit; Bryan, Janine T.; Buus, Ryan J.; Gralinski, Lisa E.; Haagmans, Bart L.; McMillan, Leonard; Miller, Darla R.; Rosenzweig, Elizabeth; Valdar, William; Wang, Jeremy; Churchill, Gary A.; Threadgill, David W.; McWeeney, Shannon K.; Katze, Michael G.; Pardo-Manuel de Villena, Fernando; Baric, Ralph S.; Heise, Mark T.

2013-01-01

Genetic variation contributes to host responses and outcomes following infection by influenza A virus or other viral infections. Yet narrow windows of disease symptoms and confounding environmental factors have made it difficult to identify polymorphic genes that contribute to differential disease outcomes in human populations. Therefore, to control for these confounding environmental variables in a system that models the levels of genetic diversity found in outbred populations such as humans, we used incipient lines of the highly genetically diverse Collaborative Cross (CC) recombinant inbred (RI) panel (the pre-CC population) to study how genetic variation impacts influenza associated disease across a genetically diverse population. A wide range of variation in influenza disease related phenotypes including virus replication, virus-induced inflammation, and weight loss was observed. Many of the disease associated phenotypes were correlated, with viral replication and virus-induced inflammation being predictors of virus-induced weight loss. Despite these correlations, pre-CC mice with unique and novel disease phenotype combinations were observed. We also identified sets of transcripts (modules) that were correlated with aspects of disease. In order to identify how host genetic polymorphisms contribute to the observed variation in disease, we conducted quantitative trait loci (QTL) mapping. We identified several QTL contributing to specific aspects of the host response including virus-induced weight loss, titer, pulmonary edema, neutrophil recruitment to the airways, and transcriptional expression. Existing whole-genome sequence data was applied to identify high priority candidate genes within QTL regions. A key host response QTL was located at the site of the known anti-influenza Mx1 gene. We sequenced the coding regions of Mx1 in the eight CC founder strains, and identified a novel Mx1 allele that showed reduced ability to inhibit viral replication, while maintaining protection from weight loss. PMID:23468633

Estimating Amazonian methane emissions through 4D-Var inverse modelling with satellite observations from GOSAT and IASI

NASA Astrophysics Data System (ADS)

Wilson, C. J.; Chipperfield, M.; Gloor, M.; McNorton, J.; Miller, J. B.; Gatti, L. V.; Siddans, R.; Bloom, A. A.; Basso, L. S.; Boesch, H.; Parker, R.; Monks, S. A.

2015-12-01

Methane (CH4) is emitted from a range of anthropogenic and natural sources, and since the industrial revolution its mean atmospheric concentration has climbed dramatically. CH4 produces a relatively high radiative forcing effect upon the Earth's climate, and its atmospheric lifetime of approximately 10 years makes it an appealing target for the mitigation of climate change. However, the spatial and temporal variation of CH4 emissions are not well understood, though in recent years a number of top-down and bottom-up studies have attempted to construct improved emission budgets. However, some top-down studies suffer from poor observational coverage near the Amazon basin, particularly in the planetary boundary layer. Since emissions from this region, coming mainly from wetland and burning sources, are thought to be relatively high, additional observations in this region would greatly help to constrain the geographical distribution of the global CH4 emission budget. To this end, regular flask measurements of CH4 and other trace gases have been taken during flights over four Amazonian sites since 2010, as part of the AMAZONICA project. The GOSAT has been used to retrieve global column-average CH4 concentrations since mid-2009, whilst IASI, on-board Metop-A, has also been measuring atmospheric CH4 concentrations since its launch in 2006. We present an assessment of Amazonian methane emissions for 2010 and 2011 using the TOMCAT Chemical Transport Model and the new variational inverse model, INVICAT. These models are used to attribute methane variations at each Amazon site to a source type and region, to assess the ability of our current CH4 flux estimates to reproduce these observations and to produce improved posterior emission estimates through assimilation of atmospheric observations. This study represents the first use of the INVICAT scheme to constrain emissions of any atmospheric trace gas. Whilst there is generally good agreement between the model and the observations prior to data assimilation, some high-methane events indicated by the observations are not captured by the model. We assimilate observations from the NOAA surface measurement network, from the AMAZONICA aircraft and from the GOSAT and IASI satellites, and find that tropical South American CH4 emissions approach 50 Tg(CH4)/yr.

Major Breeding Plumage Color Differences of Male Ruffs (Philomachus pugnax) Are Not Associated With Coding Sequence Variation in the MC1R Gene

PubMed Central

Küpper, Clemens; Burke, Terry; Lank, David B.

2015-01-01

Sequence variation in the melanocortin-1 receptor (MC1R) gene explains color morph variation in several species of birds and mammals. Ruffs (Philomachus pugnax) exhibit major dark/light color differences in melanin-based male breeding plumage which is closely associated with alternative reproductive behavior. A previous study identified a microsatellite marker (Ppu020) near the MC1R locus associated with the presence/absence of ornamental plumage. We investigated whether coding sequence variation in the MC1R gene explains major dark/light plumage color variation and/or the presence/absence of ornamental plumage in ruffs. Among 821bp of the MC1R coding region from 44 male ruffs we found 3 single nucleotide polymorphisms, representing 1 nonsynonymous and 2 synonymous amino acid substitutions. None were associated with major dark/light color differences or the presence/absence of ornamental plumage. At all amino acid sites known to be functionally important in other avian species with dark/light plumage color variation, ruffs were either monomorphic or the shared polymorphism did not coincide with color morph. Neither ornamental plumage color differences nor the presence/absence of ornamental plumage in ruffs are likely to be caused entirely by amino acid variation within the coding regions of the MC1R locus. Regulatory elements and structural variation at other loci may be involved in melanin expression and contribute to the extreme plumage polymorphism observed in this species. PMID:25534935

Intermittency of gravity wave momentum flux in the mesopause region observed with an all-sky airglow imager

NASA Astrophysics Data System (ADS)

Cao, Bing; Liu, Alan Z.

2016-01-01

The intermittency of gravity wave momentum flux (MF) near the OH airglow layer (˜87 km) in the mesopause region is investigated for the first time using observation of all-sky airglow imager over Maui, Hawaii (20.7°N, 156.3°W), and Cerro Pachón, Chile (30.3°S, 70.7°W). At both sites, the probability density function (pdf) of gravity wave MF shows two distinct distributions depending on the magnitude of the MF. For MF smaller (larger) than ˜16 m2 s-2 (0.091 mPa), the pdf follows a lognormal (power law) distribution. The intermittency represented by the Bernoulli proxy and the percentile ratio shows that gravity waves have higher intermittency at Maui than at Cerro Pachón, suggesting more intermittent background variation above Maui. It is found that most of the MF is contributed by waves that occur very infrequently. But waves that individually contribute little MF are also important because of their higher occurrence frequencies. The peak contribution is from waves with MF around ˜2.2 m2 s-2 at Cerro Pachón and ˜5.5 m2 s-2 at Maui. Seasonal variations of the pdf and intermittency imply that the background atmosphere has larger influence on the observed intermittency in the mesopause region.

The ultraviolet variations of iota Cas

NASA Technical Reports Server (NTRS)

Molnar, M. R.; Mallama, A. D.; Soskey, D. G.; Holm, A. V.

1976-01-01

The Ap variable star iota Cas was observed with the photometers on OAO-2 covering the spectral range 1430-4250 A. The ultraviolet light curves show a double wave with primary minimum and maximum at phase ? 0.00 and 0.35, respectively. Secondary minimum light is at phase ? 0.65 with secondary maximum at phase ? 0.85. The light curves longward of 3150 A vary in opposition to those shortward of this 'null region'. Ground-based coude spectra show that the Fe II and Cr II line strengths have a double-wave variation such that maximum strength occurs at minimum ultraviolet light. We suggest that the strong ultraviolet opacities due to photoionization and line blanketing by these metals may cause the observed photometric variations. We have also constructed an oblique-rotator model which shows iron and chromium lying in a great circle band rather than in circular spots.

Spectroscopy and chemistry of the atmosphere of Uranus

NASA Technical Reports Server (NTRS)

Fegley, Bruce, Jr.; Gautier, Daniel; Owen, Tobias; Prinn, Ronald G.

1991-01-01

A comprehensive review of the chemistry and spectroscopy of the Uranian atmosphere is presented by means of earth-based, earth-orbital, and Voyager 2 observations covering the UV, visible, infrared, and radio wavelength regions. It is inferred from these observations, in concert with the average density of about 1.3 g/cu cm, that the Uranian atmosphere is enriched in heavy elements relative to solar composition. Pre-Voyager earth-based observations of CH4 bands in the visible region and Voyager radio occultation data imply a CH4/H2 volume mixing ratio of about 2 percent corresponding to an enrichment of approximately 24 times the solar value of 0.000835. In contrast to CH4, microwave observations indicate an apparent depletion of NH3 in the 155-to-200-K region of the atmosphere by 100 to 200 times relative to the solar NH3/H2 mixing ratio of -0.000174. It is suggested that the temporal and latitudinal variations deduced for the NH3/H2 mixing ratio in this region of the Uranian atmosphere are due to atmospheric circulation effects.

Structure of selected basic zinc/copper (II) phosphate minerals based upon near-infrared spectroscopy--implications for hydrogen bonding.

PubMed

Frost, Ray L; Reddy, B Jagannadha; Palmer, Sara J; Keeffe, Eloise C

2011-03-01

The NIR spectra of reichenbachite, scholzite and parascholzite have been studied at 298 K. The spectra of the minerals are different, in line with composition and crystal structural variations. Cation substitution effects are significant in their electronic spectra and three distinctly different electronic transition bands are observed in the near-infrared spectra at high wavenumbers in the 12,000-7600 cm(-1) spectral region. Reichenbachite electronic spectrum is characterised by Cu(II) transition bands at 9755 and 7520 cm(-1). A broad spectral feature observed for ferrous ion in the 12,000-9000 cm(-1) region both in scholzite and parascholzite. Some what similarities in the vibrational spectra of the three phosphate minerals are observed particularly in the OH stretching region. The observation of strong band at 5090 cm(-1) indicates strong hydrogen bonding in the structure of the dimorphs, scholzite and parascholzite. The three phosphates exhibit overlapping bands in the 4800-4000 cm(-1) region resulting from the combinations of vibrational modes of (PO(4))(3-) units. Copyright © 2010 Elsevier B.V. All rights reserved.

Fewer clouds in the Mediterranean: consistency of observations and climate simulations

PubMed Central

Sanchez-Lorenzo, Arturo; Enriquez-Alonso, Aaron; Calbó, Josep; González, Josep-Abel; Wild, Martin; Folini, Doris; Norris, Joel R.; Vicente-Serrano, Sergio M.

2017-01-01

Clouds play a major role in the climate system, but large uncertainties remain about their decadal variations. Here we report a widespread decrease in cloud cover since the 1970 s over the Mediterranean region, in particular during the 1970 s–1980 s, especially in the central and eastern areas and during springtime. Confidence in these findings is high due to the good agreement between the interannual variations of cloud cover provided by surface observations and several satellite-derived and reanalysis products, although some discrepancies exist in their trends. Climate model simulations of the historical experiment from the Coupled Model Intercomparison Project Phase 5 (CMIP5) also exhibit a decrease in cloud cover over the Mediterranean since the 1970 s, in agreement with surface observations, although the rate of decrease is slightly lower. The observed northward expansion of the Hadley cell is discussed as a possible cause of detected trends. PMID:28148960

Climate-mediated spatiotemporal variability in terrestrial productivity across Europe

NASA Astrophysics Data System (ADS)

Wu, X.; Babst, F.; Ciais, P.; Frank, D.; Reichstein, M.; Wattenbach, M.; Zang, C.; Mahecha, M. D.

2014-06-01

Quantifying the interannual variability (IAV) of the terrestrial ecosystem productivity and its sensitivity to climate is crucial for improving carbon budget predictions. In this context it is necessary to disentangle the influence of climate from impacts of other mechanisms underlying the spatiotemporal patterns of IAV of the ecosystem productivity. In this study we investigated the spatiotemporal patterns of IAV of historical observations of European crop yields in tandem with a set of climate variables. We further evaluated if relevant remote-sensing retrievals of NDVI (normalized difference vegetation index) and FAPAR (fraction of absorbed photosynthetically active radiation) depict a similar behaviour. Our results reveal distinct spatial patterns in the IAV of the analysed proxies linked to terrestrial productivity. In particular, we find higher IAV in water-limited regions of Europe (Mediterranean and temperate continental Europe) compared to other regions in both crop yield and remote-sensing observations. Our results further indicate that variations in the water balance during the active growing season exert a more pronounced and direct effect than variations of temperature on explaining the spatial patterns in IAV of productivity-related variables in temperate Europe. Overall, we observe a temporally increasing trend in the IAV of terrestrial productivity and an increasing sensitivity of productivity to water availability in dry regions of Europe during the 1975-2009 period. In the same regions, a simultaneous increase in the IAV of water availability was detected. These findings suggest intricate responses of carbon fluxes to climate variability in Europe and that the IAV of terrestrial productivity has become potentially more sensitive to changes in water availability in the dry regions in Europe. The changing sensitivity of terrestrial productivity accompanied by the changing IAV of climate is expected to impact carbon stocks and the net carbon balance of European ecosystems.

Evaluation of multiple forcing data sets for precipitation and shortwave radiation over major land areas of China

NASA Astrophysics Data System (ADS)

Yang, Fan; Lu, Hui; Yang, Kun; He, Jie; Wang, Wei; Wright, Jonathon S.; Li, Chengwei; Han, Menglei; Li, Yishan

2017-11-01

Precipitation and shortwave radiation play important roles in climatic, hydrological and biogeochemical cycles. Several global and regional forcing data sets currently provide historical estimates of these two variables over China, including the Global Land Data Assimilation System (GLDAS), the China Meteorological Administration (CMA) Land Data Assimilation System (CLDAS) and the China Meteorological Forcing Dataset (CMFD). The CN05.1 precipitation data set, a gridded analysis based on CMA gauge observations, also provides high-resolution historical precipitation data for China. In this study, we present an intercomparison of precipitation and shortwave radiation data from CN05.1, CMFD, CLDAS and GLDAS during 2008-2014. We also validate all four data sets against independent ground station observations. All four forcing data sets capture the spatial distribution of precipitation over major land areas of China, although CLDAS indicates smaller annual-mean precipitation amounts than CN05.1, CMFD or GLDAS. Time series of precipitation anomalies are largely consistent among the data sets, except for a sudden decrease in CMFD after August 2014. All forcing data indicate greater temporal variations relative to the mean in dry regions than in wet regions. Validation against independent precipitation observations provided by the Ministry of Water Resources (MWR) in the middle and lower reaches of the Yangtze River indicates that CLDAS provides the most realistic estimates of spatiotemporal variability in precipitation in this region. CMFD also performs well with respect to annual mean precipitation, while GLDAS fails to accurately capture much of the spatiotemporal variability and CN05.1 contains significant high biases relative to the MWR observations. Estimates of shortwave radiation from CMFD are largely consistent with station observations, while CLDAS and GLDAS greatly overestimate shortwave radiation. All three forcing data sets capture the key features of the spatial distribution, but estimates from CLDAS and GLDAS are systematically higher than those from CMFD over most of mainland China. Based on our evaluation metrics, CLDAS slightly outperforms GLDAS. CLDAS is also closer than GLDAS to CMFD with respect to temporal variations in shortwave radiation anomalies, with substantial differences among the time series. Differences in temporal variations are especially pronounced south of 34° N. Our findings provide valuable guidance for a variety of stakeholders, including land-surface modelers and data providers.

Io's Heat Flow: A Model Including "Warm" Polar Regions

NASA Astrophysics Data System (ADS)

Veeder, G. J.; Matson, D. L.; Johnson, T. V.; Davies, A. G.; Blaney, D. L.

2002-12-01

Some 90 percent of Io's surface is thermally "passive" material. It is separate from the sites of active volcanic eruptions. Though "passive", its thermal behavior continues to be a challenge for modelers. The usual approach is to take albedo, average daytime temperature, temperature as a function of time of day, etc., and attempt to match these constraints with a uniform surface with a single value of thermal inertia. Io is a case where even globally averaged observations are inconsistent with a single-thermal-inertia model approach. The Veeder et al. (1994) model for "passive" thermal emission addressed seven constraints derived from a decade of ground-based, global observations - average albedo plus infrared fluxes at three separate wavelengths (4.8, 8.7, and 20 microns) for both daytime and eclipsed conditions. This model has only two components - a unit of infinite thermal inertia and a unit of zero thermal inertia. The free parameters are the areal coverage ratio of the two units and their relative albedos (constrained to match the known average albedo). This two-parameter model agreed with the global radiometric data and also predicted significantly higher non-volcanic nighttime temperatures than traditional ("lunar-like") single thermal inertia models. Recent observations from the Galileo infrared radiometer show relatively uniform minimum-night-time temperatures. In particular, they show little variation with either latitude or time of night (Spencer et al., 2000; Rathbun et al., 2002). Additionally, detailed analyses of Io's scattering properties and reflectance variations have led to the interesting conclusion that Io's albedo at regional scales varies little with latitude (Simonelli, et al., 2001). This effectively adds four new observational constraints - lack of albedo variation with latitude, average minimum nighttime temperature and lack of variation of temperature with either latitude or longitude. We have made the fewest modifications necessary for the Veeder et al. model to match these new constrains - we added two model parameters to characterize the volcanically heated high-latitude units. These are the latitude above which the unit exists and its nighttime temperature. The resulting four-parameter model is the first that encompasses all of the available observations of Io's thermal emission and that quantitatively satisfies all eleven observational constraints. While no model is unique, this model is significant because it is the first to accommodate widespread polar regions that are relatively "warm". This work was carried out at the Jet Propulsion Laboratory, California Institute of Technology, under contract to NASA.

Temporal variations of the anomalous oxygen component

NASA Technical Reports Server (NTRS)

Cummings, A. C.; Webber, W. R.

1983-01-01

Data from the cosmic ray experiment on Voyagers 1 and 2 was used to examine anomalous oxygen in the time period from launch in 1977 to the end of 1981. Several time periods were found where large periodic (typically 26 day) temporal variations of the oxygen intensity between approximately 5 - 15 MeV/nuc are present. Variations in intensity by up to a factor of 10 are observed during these periods. Several characteristics of these variations indicate that they are not higher energy extensions of the low energy particle (approximately 1 MeV/nuc) increases found in many corotating interaction regions (CIR's). Many of these periodic temporal variations are correlated with similar, but much smaller, recurrent variations in the 75 MeV proton rate. Voyager 1 and Voyager 2 counting rates were compared to estimate the local radial gradient for both the protons and the oxygen. The proton gradients during periods of both maximum and minumum fluxes are consistent with the overall positive radial gradients reported by others from Pioneer and near-Earth observations, supporting the view that these variations are due to local modulation of a source outside the radial range of project measurements. In contrast, the oxygen gradients during periods of maximum proton flux differ in sign from those during minimum proton fluxes, suggesting that the origin of the oxygen variations is different from that of the protons.

Genetic variation of flowering time and biomass in switchgrass

USDA-ARS?s Scientific Manuscript database

The timing of phase change from juvenile (vegetative) to adult with reproductive competence is a key factor influencing biomass yield of switchgrass. A decline in biomass yield is typically observed in switchgrass immediately following completion of flowering. In temperate regions of the USA, if flo...

Novel variants of the 5S rRNA genes in Eruca sativa.

PubMed

Singh, K; Bhatia, S; Lakshmikumaran, M

1994-02-01

The 5S ribosomal RNA (rRNA) genes of Eruca sativa were cloned and characterized. They are organized into clusters of tandemly repeated units. Each repeat unit consists of a 119-bp coding region followed by a noncoding spacer region that separates it from the coding region of the next repeat unit. Our study reports novel gene variants of the 5S rRNA genes in plants. Two families of the 5S rDNA, the 0.5-kb size family and the 1-kb size family, coexist in the E. sativa genome. The 0.5-kb size family consists of the 5S rRNA genes (S4) that have coding regions similar to those of other reported plant 5S rDNA sequences, whereas the 1-kb size family consists of the 5S rRNA gene variants (S1) that exist as 1-kb BamHI tandem repeats. S1 is made up of two variant units (V1 and V2) of 5S rDNA where the BamHI site between the two units is mutated. Sequence heterogeneity among S4, V1, and V2 units exists throughout the sequence and is not limited to the noncoding spacer region only. The coding regions of V1 and V2 show approximately 20% dissimilarity to the coding regions of S4 and other reported plant 5S rDNA sequences. Such a large variation in the coding regions of the 5S rDNA units within the same plant species has been observed for the first time. Restriction site variation is observed between the two size classes of 5S rDNA in E. sativa.(ABSTRACT TRUNCATED AT 250 WORDS)

Effects of the intense geomagnetic storm of September-October 2012 on the equatorial, low- and mid-latitude F region in the American and African sector during the unusual 24th solar cycle

NASA Astrophysics Data System (ADS)

de Jesus, R.; Fagundes, P. R.; Coster, A.; Bolaji, O. S.; Sobral, J. H. A.; Batista, I. S.; de Abreu, A. J.; Venkatesh, K.; Gende, M.; Abalde, J. R.; Sumod, S. G.

2016-02-01

The main purpose of this paper is to investigate the response of the ionospheric F layer in the American and African sectors during the intense geomagnetic storm which occurred on 30 September-01 October 2012. In this work, we used observations from a chain of 20 GPS stations in the equatorial, low- and mid-latitude regions in the American and African sectors. Also, in this study ionospheric sounding data obtained during 29th September to 2nd October, 2012 at Jicamarca (JIC), Peru, São Luis (SL), Fortaleza (FZ), Brazil, and Port Stanley (PST), are presented. On the night of 30 September-01 October, in the main and recovery phase, the h´F variations showed an unusual uplifting of the F region at equatorial (JIC, SL and FZ) and mid- (PST) latitude stations related with the propagations of traveling ionospheric disturbances (TIDs) generated by Joule heating at auroral regions. On 30 September, the VTEC variations and foF2 observations at mid-latitude stations (American sector) showed a long-duration positive ionospheric storm (over 6 h of enhancement) associated with large-scale wind circulations and equatorward neutral winds. Also, on 01 October, a long-duration positive ionospheric storm was observed at equatorial, low- and mid- latitude stations in the African sector, related with the large-scale wind circulations and equatorward neutral winds. On 01 and 02 October, positive ionospheric storms were observed at equatorial, low- and mid-latitude stations in the American sector, possibly associated with the TIDs and an equatorward neutral wind. Also, on 01 October negative ionospheric storms were observed at equatorial, low- and mid-latitude regions in the American sector, probably associated with the changes in the O/N2 ratio. On the night of 30 September-01 October, ionospheric plasma bubbles were observed at equatorial, low- and mid- latitude stations in the South American sector, possibly associated with the occurrence of geomagnetic storm.

DIVERGENT HORIZONTAL SUB-SURFACE FLOWS WITHIN ACTIVE REGION 11158

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jain, Kiran; Tripathy, S. C.; Hill, F., E-mail: kjain@nso.edu, E-mail: stripathy@nso.edu, E-mail: fhill@nso.edu

We measure the horizontal subsurface flow in a fast emerging active region (AR; NOAA 11158) using the ring-diagram technique and the Helioseismic and Magnetic Imager high spatial resolution Dopplergrams. This AR had a complex magnetic structure and displayed significant changes in morphology during its disk passage. Over a period of six days from 2011 February 11 to 16, the temporal variation in the magnitude of the total velocity is found to follow the trend of magnetic field strength. We further analyze regions of individual magnetic polarity within AR 11158 and find that the horizontal velocity components in these sub-regions havemore » significant variation with time and depth. The leading and trailing polarity regions move faster than the mixed-polarity region. Furthermore, both zonal and meridional components have opposite signs for trailing and leading polarity regions at all depths showing divergent flows within the AR. We also find a sharp decrease in the magnitude of total horizontal velocity in deeper layers around major flares. It is suggested that the re-organization of magnetic fields during flares, combined with the sunspot rotation, decreases the magnitude of horizontal flows or that the flow kinetic energy has been converted into the energy released by flares. After the decline in flare activity and sunspot rotation, the flows tend to follow the pattern of magnetic activity. We also observe less variation in the velocity components near the surface but these tend to increase with depth, further demonstrating that the deeper layers are more affected by the topology of ARs.« less

Evaluating Water Storage Variations in the MENA region using GRACE Satellite Data

NASA Astrophysics Data System (ADS)

Lopez, O.; Houborg, R.; McCabe, M. F.

2013-12-01

Terrestrial water storage (TWS) variations over large river basins can be derived from temporal gravity field variations observed by the Gravity Recovery and Climate Experiment (GRACE) satellites. These signals are useful for determining accurate estimates of water storage and fluxes over areas covering a minimum of 150,000 km2 (length scales of a few hundred kilometers) and thus prove to be a valuable tool for regional water resources management, particularly for areas with a lack of in-situ data availability or inconsistent monitoring, such as the Middle East and North Africa (MENA) region. This already stressed arid region is particularly vulnerable to climate change and overdraft of its non-renewable freshwater sources, and thus direction in managing its resources is a valuable aid. An inter-comparison of different GRACE-derived TWS products was done in order to provide a quantitative assessment on their uncertainty and their utility for diagnosing spatio-temporal variability in water storage over the MENA region. Different processing approaches for the inter-satellite tracking data from the GRACE mission have resulted in the development of TWS products, with resolutions in time from 10 days to 1 month and in space from 0.5 to 1 degree global gridded data, while some of them use input from land surface models in order to restore the original signal amplitudes. These processing differences and the difficulties in recovering the mass change signals over arid regions will be addressed. Output from the different products will be evaluated and compared over basins inside the MENA region, and compared to output from land surface models.

Ionospheric variation observed in Oregon Real-time GNSS network during the total eclipse of 21 August 2017

NASA Astrophysics Data System (ADS)

Shahbazi, A.; Park, J.; Kim, S.; Oberg, R.

2017-12-01

As the ionospheric behavior is highly related to the solar activity, the total eclipse passing across the North America on 21 August 2017 is expected to significantly affect the electron density in the ionosphere along the path. Taking advantage of GNSS capability for observing total electron content (TEC), this study demonstrates the impact of the total eclipse not only on the TEC variation during the period of the event but also on GNSS positioning. Oregon Department of Transportation (ODOT) runs a dense real time GNSS network, referred to as Oregon Real-time GNSS network (ORGN). From the dual frequency GPS and GLONASS observations in ORGN, the TEC over the network area can be extracted. We observe the vertical TEC (VTEC) from the ORGN for analyzing the ionospheric condition in the local area affected by the eclipse. To observe the temporal variation, we also observe the slant TEC (STEC) in each ray path and analyze the short term variation in different geometry of each ray path. Although the STEC is dependent quantity upon the changing geometry of a satellite, this approach provides insight to the ionospheric behavior of the total eclipse because the STEC does not involve the projection error, which is generated by VTEC computation. During the period of eclipse, the abnormal variations on VTEC and STEC are expected. The experimental results will be presented in time series plots for selected stations as well as the regional TEC map in Oregon. In addition to the TEC monitoring, we also test the positioning result of ORGN stations through Precise Point Positioning (PPP) and relative positioning. The expected result is that the both positioning results are degraded during the solar eclipse due to the instable ionospheric condition over short time.

Characteristics of the fractional cloud cover and its altitude distribution over the Indian Ocean region derived from NOAA14-AVHRR

NASA Astrophysics Data System (ADS)

Suresh Raju, C.; Rajeev, K.; Parameswaran, K.

The climatic impact of clouds and their role in energy and radiation budget of earth-atmosphere system largely depends on the cloud properties and its altitude of occurrence. The quantitative estimates of spatio-temporal variations of cloud fraction and cloud properties are limited over the tropical Indian Oceanic region. Cloudiness and its radiative properties over this region is significantly different from other tropical regions indicating the need for their detailed studies. This has an important role in the Indian summer monsoon which is also a part of the global climate system. Daily, monthly, seasonal and yearly mean frequency of occurrence of total and high altitude clouds are derived from the brightness temperature (TB) obtained from NOAA14-AVHRR data during the period of 1996-1999, and their spatio-temporal variations are investigated. The inversion algorithm used here is similar to the CLIVAR algorithm applied by ISCCP. All clouds with TB quad < 250 K are classified as high clouds, as their altitude of occurrence will be above ˜ 6 km. The clouds above ˜ 10 km (with TB<220K) are also classified separately to study the deep convective events. The geographical distribution of monthly, seasonal and annual mean frequency of occurrence of total cloud (Ftot) and high cloud (Fh) are remarkably consistent from year to year, though the absolute magnitude of the frequency of occurrence can vary by as much as 30%. The highest annual variations in Ftot and Fh are observed near the eastern parts of Bay of Bengal. The average amplitude of the annual cycle in Ftot in this region is ˜ 40%. During the south-west monsoon season, the monthly mean of Ftot shows very large spatial gradients in the western Arabian Sea. In July, the Ftot varies from less than 20% near Arabian coastal regions to more than 75% at a location 10 degrees east of the Arabian coast. Similar gradients in Ftot are also observed between the equator and 10 S. One of the very striking features in Ftot during this period is the minimum cloudiness observed around Srilanka during the Indian summer monsoon season, which is more discernable in high clouds. The cloud occurrence over the Indian subcontinent is less than 20% during the period of December to March. The presence of double inter tropical convergence zone (ITCZ), characterized by large cloud bands that are confined in latitude and elongated in longitude, are observed over Indian Ocean during November to March period, though the frequency of occurrence of such events is very small.

Observations of seasonal variations in atmospheric greenhouse trapping and its enhancement at high sea surface temperature

NASA Technical Reports Server (NTRS)

Hallberg, Robert; Inamdar, Anand K.

1993-01-01

Greenhouse trapping is examined theoretically using a version of the radiative transfer equations that demonstrates how atmospheric greenhouse trapping can vary. Satellite observations of atmospheric greenhouse trapping are examined for four months representing the various seasons. The cause of the super greenhouse effect at the highest SSTs is examined, and four processes are found to contribute. The middle and upper troposphere must be particularly moist and the temperature lapse rate must be increasingly unstable over the warmest regions to explain the observed distribution of atmospheric greenhouse trapping. Since the highest SSTs are generally associated with deep convection, this suggests that deep convection acts to moisten the middle and upper troposphere in regions of the highest SSTs relative to other regions. The tropical atmospheric circulation acts to both increase the temperature lapse rate and greatly increase the atmospheric water vapor concentration with spatially increasing SST.

Multi Timescale Multispectral Observation of the Jovian Aurora CYCLE3 High

NASA Astrophysics Data System (ADS)

Gerard, Jean-Claude

1992-06-01

Previous HST observations made with the FOC have demonstrated the ability of the HST to provide high spatial resolution images of the ultraviolet jovian aurora. They and other IUE and Voyager UVS observations suggest that wavelength dependence and time variations occur with different characteristic times. We propose to image the ultraviolet jovian aurora in several passbands to investigate its temporal variation on timescales ranging from ~10 min to hours. Exposures will be made when the 180 deg (Lambda III) longitude sector, where the aurora is best visible from Earth orbit, faces the Earth. Due to the expected loss of sensitivity in the far UV, this program should be preformed before the COSTAR correction. Coordinated IR measurements of emission connected to the UV aurora but originating from different altitude regions will be obtained in parallel with HST observations. Simultaneous radio observations of decametric jovian emissions and IUE UV spectra will also provide complementary data on energetic particle precipitation. The observed morphology, color ratio and characteristic time of the temporal variations will provide key information to discriminate between the various origins , identity and acceleration mechanisms of the precipitating particles. Theoretical models of particle interaction with the jovian magnetic field and atmosphere available from the proposing team will be used to derive quantitative information on these processes.

Linking Investigations in Trauma and Emergency Services (LITES)

DTIC Science & Technology

2017-10-01

observational cohort that will have a limited data set from trauma registry data and electronic health records. Specific Aim one is to characterize the...epidemiology of moderate and severe physical injury in the U.S. and across the LITES network and investigate regional variations of presenting...observational cohort that will have a limited data set from trauma registry data and electronic health records. Specific Aim one is to characterize the

An experimental test of plant canopy reflectance models on cotton

NASA Technical Reports Server (NTRS)

Lemaster, E. W.

1974-01-01

Extensive data on the plant parameters necessary to evaluate any model are presented for a cotton crop. The variation of the bidirectional reflectance function with observer altitude, observer azimuth, and sun altitude angle is presented for a high density cotton crop having leaf index of 19. A comparison with the quantitative behavior obtained from the Suits model is accomplished in the wavelength region from 400 nm to 1050 nm.

Faraday rotation measurements at Ootacamund

NASA Technical Reports Server (NTRS)

Sethia, G.; Chandra, H.; Deshpande, M. R.; Rastogi, R. G.

1978-01-01

The results of Faraday rotation measurements made at Ootacamund during ATS-6 phase II are presented. For summer and equinoctial months, even though no clear noon bite-out is observed in the variation of Faraday a decrease is observed in the rate of increase of rotation around 0900-1000 hours LT. This is attributed to the 'fountain effect' which is responsible for the noontime bite-out in F2-region peak electron density.

Impact of lateral boundary conditions on regional analyses

NASA Astrophysics Data System (ADS)

Chikhar, Kamel; Gauthier, Pierre

2017-04-01

Regional and global climate models are usually validated by comparison to derived observations or reanalyses. Using a model in data assimilation results in a direct comparison to observations to produce its own analyses that may reveal systematic errors. In this study, regional analyses over North America are produced based on the fifth-generation Canadian Regional Climate Model (CRCM5) combined with the variational data assimilation system of the Meteorological Service of Canada (MSC). CRCM5 is driven at its boundaries by global analyses from ERA-interim or produced with the global configuration of the CRCM5. Assimilation cycles for the months of January and July 2011 revealed systematic errors in winter through large values in the mean analysis increments. This bias is attributed to the coupling of the lateral boundary conditions of the regional model with the driving data particularly over the northern boundary where a rapidly changing large scale circulation created significant cross-boundary flows. Increasing the time frequency of the lateral driving and applying a large-scale spectral nudging improved significantly the circulation through the lateral boundaries which translated in a much better agreement with observations.

Persistent Longitudinal Variations of Plasma Density and DC Electric Fields in the Low Latitude Ionosphere Observed with Probes on the C/NOFS Satellite

NASA Technical Reports Server (NTRS)

Pfaff, R.; Freudenreich, H.; Klenzing, J.; Rowland, D.; Liebrecht, C.; Bromund, K.; Roddy, P.

2010-01-01

Continuous measurements using in situ probes on consecutive orbits of the C/N0FS satellite reveal that the plasma density is persistently organized by longitude, in both day and night conditions and at all locations within the satellite orbit, defined by its perigee and apogee of 401 km and 867 km, respectively, and its inclination of 13 degrees. Typical variations are a factor of 2 or 3 compared to mean values. Furthermore, simultaneous observations of DC electric fields and their associated E x B drifts in the low latitude ionosphere also reveal that their amplitudes are also strongly organized by longitude in a similar fashion. The drift variations with longitude are particularly pronounced in the meridional component perpendicular to the magnetic field although they are also present in the zonal component as well. The longitudes of the peak meridional drift and density values are significantly out of phase with respect to each other. Time constants for the plasma accumulation at higher altitudes with respect to the vertical drift velocity must be taken into account in order to properly interpret the detailed comparisons of the phase relationship of the plasma density and plasma velocity variations. Although for a given period corresponding to that of several days, typically one longitude region dominates the structuring of the plasma density and plasma drift data, there is also evidence for variations organized about multiple longitudes at the same time. Statistical averages will be shown that suggest a tidal "wave 4" structuring is present in both the plasma drift and plasma density data. We interpret the apparent association of the modulation of the E x B drifts with longitude as well as that of the ambient plasma density as a manifestation of tidal forces at work in the low latitude upper atmosphere. The observations demonstrate how the high duty cycle of the C/NOFS observations and its unique orbit expose fundamental processes at work in the low latitude, inner regions of geospace.