Ground-based Observation System Development for the Moon Hyper-spectral Imaging

NASA Astrophysics Data System (ADS)

Wang, Yang; Huang, Yu; Wang, Shurong; Li, Zhanfeng; Zhang, Zihui; Hu, Xiuqing; Zhang, Peng

2017-05-01

The Moon provides a suitable radiance source for on-orbit calibration of space-borne optical instruments. A ground-based observation system dedicated to the hyper-spectral radiometry of the Moon has been developed for improving and validating the current lunar model. The observation instrument using a dispersive imaging spectrometer is particularly designed for high-accuracy observations of the lunar radiance. The simulation and analysis of the push-broom mechanism is made in detail for lunar observations, and the automated tracking and scanning is well accomplished in different observational condition. A three-month series of hyper-spectral imaging experiments of the Moon have been performed in the wavelength range from 400 to 1000 nm near Lijiang Observatory (Yunnan, China) at phase angles -83°-87°. Preliminary results and data comparison are presented, and it shows the instrument performance and lunar observation capability of this system are well validated. Beyond previous measurements, this observation system provides the entire lunar disk images of continuous spectral coverage by adopting the push-broom mode with special scanning scheme and leads to the further research of lunar photometric model.

Solar flare microwave observations with high spectral resolution

NASA Astrophysics Data System (ADS)

Bruggmann, G.; Magun, A.; Benz, A. O.; Stehling, W.

1990-12-01

The solar flare radio emission in the 6-8 GHz range was observed with a high resolution spectrometer. The observed band corresponds to the plasma frequencies and gyrofrequencies of the transition region and the lowest part of the corona in active regions. Most of the emissions were found to be broadbanded, as expected from the gyrosynchrotron mechanism. In eight out of 46 observed events, spectral structures of three types were detected: spikes below the time resolution of 100 ms, slowly drifting broadband structures, and a narrow bandwidth patch of continuum emission. These first narrowband bursts spectrally recorded in the 6-8 GHz range are generally weak. Slowly drifting structures are the only type compatible with the gyrosynchrotron emission mechanism. A simple argument based on free-free absorption shows that plasma emission can only be propagated if the radiation originates in a dense region with a small density-scale length. The same holds for maser emission at a low harmonic of the electron gyrofrequency. Possible emission mechanisms and diagnostic capabilities are discussed.

Tandem mass spectrometry spectral libraries and library searching.

PubMed

Deutsch, Eric W

2011-01-01

Spectral library searching in the field of proteomics has been gaining visibility and use in the last few years, primarily due to the expansion of public proteomics data repositories and the large spectral libraries that can be generated from them. Spectral library searching has several advantages over conventional sequence searching: it is generally much faster, and has higher specificity and sensitivity. The speed increase is primarily, due to having a smaller, fully indexable search space of real spectra that are known to be observable. The increase in specificity and sensitivity is primarily due to the ability of a search engine to utilize the known intensities of the fragment ions, rather than just comparing with theoretical spectra as is done with sequence searching. The main disadvantage of spectral library searching is that one can only identify peptide ions that have been seen before and are stored in the spectral library. In this chapter, an overview of spectral library searching and the libraries currently available are presented.

A Ligand-observed Mass Spectrometry Approach Integrated into the Fragment Based Lead Discovery Pipeline

PubMed Central

Chen, Xin; Qin, Shanshan; Chen, Shuai; Li, Jinlong; Li, Lixin; Wang, Zhongling; Wang, Quan; Lin, Jianping; Yang, Cheng; Shui, Wenqing

2015-01-01

In fragment-based lead discovery (FBLD), a cascade combining multiple orthogonal technologies is required for reliable detection and characterization of fragment binding to the target. Given the limitations of the mainstream screening techniques, we presented a ligand-observed mass spectrometry approach to expand the toolkits and increase the flexibility of building a FBLD pipeline especially for tough targets. In this study, this approach was integrated into a FBLD program targeting the HCV RNA polymerase NS5B. Our ligand-observed mass spectrometry analysis resulted in the discovery of 10 hits from a 384-member fragment library through two independent screens of complex cocktails and a follow-up validation assay. Moreover, this MS-based approach enabled quantitative measurement of weak binding affinities of fragments which was in general consistent with SPR analysis. Five out of the ten hits were then successfully translated to X-ray structures of fragment-bound complexes to lay a foundation for structure-based inhibitor design. With distinctive strengths in terms of high capacity and speed, minimal method development, easy sample preparation, low material consumption and quantitative capability, this MS-based assay is anticipated to be a valuable addition to the repertoire of current fragment screening techniques. PMID:25666181

Hierarchical Fragmentation in the Perseus Molecular Cloud: From the Cloud Scale to Protostellar Objects

NASA Astrophysics Data System (ADS)

Pokhrel, Riwaj; Myers, Philip C.; Dunham, Michael M.; Stephens, Ian W.; Sadavoy, Sarah I.; Zhang, Qizhou; Bourke, Tyler L.; Tobin, John J.; Lee, Katherine I.; Gutermuth, Robert A.; Offner, Stella S. R.

2018-01-01

We present a study of hierarchical structure in the Perseus molecular cloud, from the scale of the entire cloud (≳ 10 pc) to smaller clumps (∼1 pc), cores (∼0.05–0.1 pc), envelopes (∼300–3000 au), and protostellar objects (∼15 au). We use new observations from the Submillimeter Array (SMA) large project “Mass Assembly of Stellar Systems and their Evolution with the SMA (MASSES)” to probe the envelopes, and recent single-dish and interferometric observations from the literature for the remaining scales. This is the first study to analyze hierarchical structure over five scales in the same cloud complex. We compare the number of fragments with the number of Jeans masses in each scale to calculate the Jeans efficiency, or the ratio of observed to expected number of fragments. The velocity dispersion is assumed to arise either from purely thermal motions or from combined thermal and non-thermal motions inferred from observed spectral line widths. For each scale, thermal Jeans fragmentation predicts more fragments than observed, corresponding to inefficient thermal Jeans fragmentation. For the smallest scale, thermal plus non-thermal Jeans fragmentation also predicts too many protostellar objects. However, at each of the larger scales thermal plus non-thermal Jeans fragmentation predicts fewer than one fragment, corresponding to no fragmentation into envelopes, cores, and clumps. Over all scales, the results are inconsistent with complete Jeans fragmentation based on either thermal or thermal plus non-thermal motions. They are more nearly consistent with inefficient thermal Jeans fragmentation, where the thermal Jeans efficiency increases from the largest to the smallest scale.

Spectral evolution of GRBs with negative spectral lag using Fermi GBM observations

NASA Astrophysics Data System (ADS)

Chakrabarti, Arundhati; Chaudhury, Kishor; Sarkar, Samir K.; Bhadra, Arunava

2018-06-01

The positive spectral lag of Gamma Ray Bursts (GRBs) is often explained in terms of hard-to-soft spectral evolution of GRB pulses. While positive lags of GRBs is very common, there are few GRB pulses that exhibits negative spectral lags. In the present work we examine whether negative lags of GRBs also can be interpreted in terms of spectral evolution of GRB pulses or not. Using Fermi-GBM data, we identify two GRBs, GRB 090426C and GRB 150213A, with clean pulses that exhibit negative spectral lag. An indication of soft to hard transition has been noticed for the negative spectral lag events from the spectral evolution study. The implication of the present findings on the models of GRB spectral lags are discussed.

Solar Spectral Irradiance Variability in Cycle 24: Model Predictions and OMI Observations

NASA Technical Reports Server (NTRS)

Marchenko, S.; DeLand, M.; Lean, J.

2016-01-01

Utilizing the excellent stability of the Ozone Monitoring Instrument (OMI), we characterize both short-term (solar rotation) and long-term (solar cycle) changes of the solar spectral irradiance (SSI) between 265-500 nanometers during the ongoing Cycle 24. We supplement the OMI data with concurrent observations from the GOME-2 (Global Ozone Monitoring Experiment - 2) and SORCE (Solar Radiation and Climate Experiment) instruments and find fair-to-excellent agreement between the observations and predictions of the NRLSSI2 (Naval Research Laboratory Solar Spectral Irradiance - post SORCE) and SATIRE-S (the Naval Research Laboratory's Spectral And Total Irradiance REconstruction for the Satellite era) models.

Composite Overwrap Fragmentation Observations, Concerns, and Recommendations

NASA Technical Reports Server (NTRS)

Bangham, Mike; Hovater, Mary

2017-01-01

A series of test activities has raised some concerns about the generation of orbital debris caused by failures of composite overwrapped pressure vessels (COPVs). These tests have indicated that a large number of composite fragments can be produced by either pressure burst failures or by high-speed impacts. A review of prior high-speed tests with COPV indicates that other tests have produced large numbers of composite fragments. As was the case with the test referenced here, the tests tended to produce a large number of small composite fragments with relatively low velocities induced by the impact and or gas expansion.

[Progress in the spectral library based protein identification strategy].

PubMed

Yu, Derui; Ma, Jie; Xie, Zengyan; Bai, Mingze; Zhu, Yunping; Shu, Kunxian

2018-04-25

Exponential growth of the mass spectrometry (MS) data is exhibited when the mass spectrometry-based proteomics has been developing rapidly. It is a great challenge to develop some quick, accurate and repeatable methods to identify peptides and proteins. Nowadays, the spectral library searching has become a mature strategy for tandem mass spectra based proteins identification in proteomics, which searches the experiment spectra against a collection of confidently identified MS/MS spectra that have been observed previously, and fully utilizes the abundance in the spectrum, peaks from non-canonical fragment ions, and other features. This review provides an overview of the implement of spectral library search strategy, and two key steps, spectral library construction and spectral library searching comprehensively, and discusses the progress and challenge of the library search strategy.

Multi-spectral observations of flares

NASA Astrophysics Data System (ADS)

Zuccarello, F.

2016-11-01

Observations show that during solar flares radiation can be emitted across the entire electromagnetic spectrum, spanning from gamma rays to radio waves. These emissions, related to the conversion of magnetic energy into other forms of energy (kinetic, thermal, waves) through magnetic reconnection, are due to different physical processes that can occur in different layers of the Sun. This means that flare observations need to be carried out using instruments operating in different wave-bands in order to achieve a complete scenario of the processes going on. Taking into account that most of the radiative energy is emitted at optical and UV wavelengths, observations carried out from space, need to be complemented by observations carried out from ground-based telescopes. Nowadays, the possibility to carry on high temporal, spatial and spectral resolution from ground-based telescopes in coordinated campaigns with space-borne instruments (like, i.e., IRIS and HINODE) gives the opportunity to investigate the details of the flare emission at different wavelengths and can provide useful hints to understand these phenomena and compare observations with models. However, it is undoubted that sometimes the pointing to the flaring region is not an easy task, due to the necessity to provide the target coordinates to satellites with some hours in advance. Some problems arising from this issue will be discussed. Moreover, new projects related to flare catalogues and archives will be presented.

Orbiter glow observations at high spectral resolution

NASA Technical Reports Server (NTRS)

Kendall, D. J. W.; Mende, S. B.; Yn, E. J. ADMCDADE, I. C. AEMENDE, S. B.

1985-01-01

An experiment flow on mission STS 41-G as part of the Canadian complement of experiments was designed to obtain relatively high resolution spectra of the Orbiter glow phenomenon over limited spectral regions centered on prominent upper atmospheric emissions. Observations were carried out successfully at altitudes of 360 km and 230 km although those at the lower altitude were limited by degradation of the image intensifier. Definitive glow results were obtained at the end of a thruster firing which showed the spectrum to be a continuum at a resolution of approximately 0.4 nm centered at a wavelength of 360 nm. Results at other wavelengths in the absence of any firings strongly suggest that the Orbiter glow is a continuum throughout the spectral region 550 nm to 760 nm. A discussion is presented that considers the reaction NO + O2 as being a possible candidate for the mechanism producing the shuttle glow.

Observer model optimization of a spectral mammography system

NASA Astrophysics Data System (ADS)

Fredenberg, Erik; Åslund, Magnus; Cederström, Björn; Lundqvist, Mats; Danielsson, Mats

2010-04-01

Spectral imaging is a method in medical x-ray imaging to extract information about the object constituents by the material-specific energy dependence of x-ray attenuation. Contrast-enhanced spectral imaging has been thoroughly investigated, but unenhanced imaging may be more useful because it comes as a bonus to the conventional non-energy-resolved absorption image at screening; there is no additional radiation dose and no need for contrast medium. We have used a previously developed theoretical framework and system model that include quantum and anatomical noise to characterize the performance of a photon-counting spectral mammography system with two energy bins for unenhanced imaging. The theoretical framework was validated with synthesized images. Optimal combination of the energy-resolved images for detecting large unenhanced tumors corresponded closely, but not exactly, to minimization of the anatomical noise, which is commonly referred to as energy subtraction. In that case, an ideal-observer detectability index could be improved close to 50% compared to absorption imaging. Optimization with respect to the signal-to-quantum-noise ratio, commonly referred to as energy weighting, deteriorated detectability. For small microcalcifications or tumors on uniform backgrounds, however, energy subtraction was suboptimal whereas energy weighting provided a minute improvement. The performance was largely independent of beam quality, detector energy resolution, and bin count fraction. It is clear that inclusion of anatomical noise and imaging task in spectral optimization may yield completely different results than an analysis based solely on quantum noise.

Meteoroid Fragmentation as Revealed in Head- and Trail-Echoes Observed with the Arecibo UHF and VHF Radars

NASA Technical Reports Server (NTRS)

Mathews, J. D.; Malhorta, A.

2011-01-01

We report recent 46.8/430 MHz (VHF/UHF) radar meteor observations at Arecibo Observatory (AO) that reveal many previously unreported features in the radar meteor return - including flare-trails at both UHF and VHF - that are consistent with meteoroid fragmentation. Signature features of fragmentation include strong intra-pulse and pulse-to-pulse fading as the result of interference between or among multiple meteor head-echo returns and between head-echo and impulsive flare or "point" trail-echoes. That strong interference fading occurs implies that these scatterers exhibit well defined phase centers and are thus small compared with the wavelength. These results are consistent with and offer advances beyond a long history of optical and radar meteoroid fragmentation studies. Further, at AO, fragmenting and flare events are found to be a large fraction of the total events even though these meteoroids are likely the smallest observed by the major radars. Fragmentation is found to be a major though not dominate component of the meteors observed at other HPLA radars that are sensitive to larger meteoroids.

Timeframe Dependent Fragment Ions Observed in In-Source Decay Experiments with β-Casein Using MALDI MS.

PubMed

Sekiya, Sadanori; Nagoshi, Keishiro; Iwamoto, Shinichi; Tanaka, Koichi; Takayama, Mitsuo

2015-09-01

The fragment ions observed with time-of-flight (TOF) and quadrupole ion trap (QIT) TOF mass spectrometers (MS) combined with matrix-assisted laser desorption/ionization in-source decay (MALDI-ISD) experiments of phosphorylated analytes β-casein and its model peptide were compared from the standpoint of the residence timeframe of analyte and fragment ions in the MALDI ion source and QIT cell. The QIT-TOF MS gave fragment c-, z'-, z-ANL, y-, and b-ions, and further degraded fragments originating from the loss of neutrals such as H(2)O, NH(3), CH(2)O (from serine), C2H4O (from threonine), and H(3)PO(4), whereas the TOF MS merely showed MALDI source-generated fragment c-, z'-, z-ANL, y-, and w-ions. The fragment ions observed in the QIT-TOF MS could be explained by the injection of the source-generated ions into the QIT cell or a cooperative effect of a little internal energy deposition, a long residence timeframe (140 ms) in the QIT cell, and specific amino acid effects on low-energy CID, whereas the source-generated fragments (c-, z'-, z-ANL, y-, and w-ions) could be a result of prompt radical-initiated fragmentation of hydrogen-abundant radical ions [M + H + H](+) and [M + H - H](-) within the 53 ns timeframe, which corresponds to the delayed extraction time. The further degraded fragment b/y-ions produced in the QIT cell were confirmed by positive- and negative-ion low-energy CID experiments performed on the source-generated ions (c-, z'-, and y-ions). The loss of phosphoric acid (98 u) from analyte and fragment ions can be explained by a slow ergodic fragmentation independent of positive and negative charges.

Timeframe Dependent Fragment Ions Observed in In-Source Decay Experiments with β-Casein Using MALDI MS

NASA Astrophysics Data System (ADS)

Sekiya, Sadanori; Nagoshi, Keishiro; Iwamoto, Shinichi; Tanaka, Koichi; Takayama, Mitsuo

2015-09-01

The fragment ions observed with time-of-flight (TOF) and quadrupole ion trap (QIT) TOF mass spectrometers (MS) combined with matrix-assisted laser desorption/ionization in-source decay (MALDI-ISD) experiments of phosphorylated analytes β-casein and its model peptide were compared from the standpoint of the residence timeframe of analyte and fragment ions in the MALDI ion source and QIT cell. The QIT-TOF MS gave fragment c-, z'-, z-ANL, y-, and b-ions, and further degraded fragments originating from the loss of neutrals such as H2O, NH3, CH2O (from serine), C2H4O (from threonine), and H3PO4, whereas the TOF MS merely showed MALDI source-generated fragment c-, z'-, z-ANL, y-, and w-ions. The fragment ions observed in the QIT-TOF MS could be explained by the injection of the source-generated ions into the QIT cell or a cooperative effect of a little internal energy deposition, a long residence timeframe (140 ms) in the QIT cell, and specific amino acid effects on low-energy CID, whereas the source-generated fragments (c-, z'-, z-ANL, y-, and w-ions) could be a result of prompt radical-initiated fragmentation of hydrogen-abundant radical ions [M + H + H]+ and [M + H - H]- within the 53 ns timeframe, which corresponds to the delayed extraction time. The further degraded fragment b/y-ions produced in the QIT cell were confirmed by positive- and negative-ion low-energy CID experiments performed on the source-generated ions (c-, z'-, and y-ions). The loss of phosphoric acid (98 u) from analyte and fragment ions can be explained by a slow ergodic fragmentation independent of positive and negative charges.

Observation of the Hydrogen Migration in the Cation-Induced Fragmentation of the Pyridine Molecules.

PubMed

Wasowicz, Tomasz J; Pranszke, Bogusław

2016-02-25

The ability to selectively control chemical reactions related to biology, combustion, and catalysis has recently attracted much attention. In particular, the hydrogen atom relocation may be used to manipulate bond-breaking and new bond-forming processes and may hold promise for far-reaching applications. Thus, the hydrogen atom migration preceding fragmentation of the gas-phase pyridine molecules by the H(+), H2(+), He(+), He(2+), and O(+) impact has been studied experimentally in the energy range of 5-2000 eV using collision-induced luminescence spectroscopy. Formation of the excited NH(A(3)Π) radicals was observed among the atomic and diatomic fragments. The structure of the pyridine molecule is lacking of the NH group, therefore observation of its A(3)Π → X(3)Σ(-) emission bands is an evidence of the hydrogen atom relocation prior to the cation-induced fragmentation. The NH(A(3)Π) emission yields indicate that formation of the NH radicals depends on the type of selected projectile and can be controlled by tuning its velocity. The plausible collisional mechanisms as well as fragmentation channels for NH formation in pyridine are discussed.

In Situ X-Ray Observations of Dendritic Fragmentation During Directional Solidification of a Sn-Bi Alloy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gibbs, John W.; Tourret, Damien; Gibbs, Paul J.

2015-09-25

Dendrite fragmentation is an important phenomenon in microstructural development during solidification. For instance, it plays a key role in initiating the columnar-to-equiaxed transition (CET). Here, we use x-ray radiography to study dendrite fragmentation rate in a Sn-39.5 wt.% Bi alloy during directional solidification. Experiments were performed in which solidification was parallel and anti-parallel to gravity, leading to significantly different fragmentation rates. We quantify the distribution of fragmentation rate as a function of distance from the solidification front, time in the mushy zone, and volume fraction of solid. While the observed fragmentation rate can be high, there is no evidence ofmore » a CET, illustrating that it requires more than just fragmentation to occur.« less

In Situ X-Ray Observations of Dendritic Fragmentation During Directional Solidification of a Sn-Bi Alloy

DOE PAGES

Gibbs, John W.; Tourret, Damien; Gibbs, Paul J.; ...

2015-09-25

Dendrite fragmentation is an important phenomenon in microstructural development during solidification. For instance, it plays a key role in initiating the columnar-to-equiaxed transition (CET). In this paper, we use x-ray radiography to study dendrite fragmentation rate in a Sn-39.5 wt.% Bi alloy during directional solidification. Experiments were performed in which solidification was parallel and anti-parallel to gravity, leading to significantly different fragmentation rates. We quantify the distribution of fragmentation rate as a function of distance from the solidification front, time in the mushy zone, and volume fraction of solid. Finally, while the observed fragmentation rate can be high, there ismore » no evidence of a CET, illustrating that it requires more than just fragmentation to occur.« less

Temporal evolution of ion spectral structures during a geomagnetic storm: Observations and modeling

NASA Astrophysics Data System (ADS)

Ferradas, C.; Zhang, J.; Spence, H. E.; Kistler, L. M.; Larsen, B.; Reeves, G. D.; Skoug, R. M.; Funsten, H. O.

2016-12-01

During the last decades several missions have recorded the presence of dynamic spectral features of energetic ions in the inner magnetosphere. We present a case study of the temporal evolution of H+, He+, and O+ spectral structures throughout the geomagnetic storm of 2 October 2013. We use data from the Helium, Oxygen, Proton, and Electron (HOPE) mass spectrometer onboard Van Allen Probe A to analyze the spectral structures in the energy range of 1- 50 keV. We find that the characteristics of the ion structures follow a cyclic pattern, the observed features changing dramatically as the storm starts and then returning to its initial pre-storm state. Quiet, pre-storm times are characterized by multiple and often complex flux structures at narrow energy bands. During the storm main phase, the observed features become simple, with no nose structures or only one nose structure present in the energy-time spectrograms. As the inner magnetosphere recovers from the storm, more complex structures appear once again. Additionally, the heavy ion spectral features are generally more complex than the H+ features, with multiple noses being observed more often in the heavy ion spectra. We use a model of ion drift and losses due to charge exchange to understand the formation of the spectral features and their species dependence.

Ion spectral structures observed by the Van Allen Probes

NASA Astrophysics Data System (ADS)

Ferradas, C.; Zhang, J.; Spence, H. E.; Kistler, L. M.; Larsen, B.; Reeves, G. D.; Skoug, R. M.; Funsten, H. O.

2015-12-01

During the last decades several missions have recorded the presence of dynamic spectral features of energetic ions in the inner magnetosphere. Previous studies have reported single "nose-like" structures occurring alone and simultaneous nose-like structures (up to three). These ion structures are named after the characteristic shapes of energy bands or gaps in the energy-time spectrograms of in situ measured ion fluxes. They constitute the observational signatures of ion acceleration, transport, and loss in the global magnetosphere. The HOPE mass spectrometer onboard the Van Allen Probes measures energetic hydrogen, helium, and oxygen ions near the inner edge of the plasma sheet, where these ion structures are observed. We present a statistical study of nose-like structures, using 2-years measurements from the HOPE instrument. The results provide important details about the spatial distribution (dependence on geocentric distance), spectral features of the structures (differences among species), and geomagnetic conditions under which these structures occur.

An overview of the CILBO spectral observation program

NASA Astrophysics Data System (ADS)

Rudawska, R.; Zender, J.; Koschny, D.

2016-01-01

The video equipment can be easily adopted with a spectral grating to obtain spectral information from meteors. Therefore, in recent years spectroscopic observations of meteors have become quite popular. The Meteor Research Group (MRG) of the European Space Agency has been working on upgrating the analysis of meteor spectra as well, operating image-intensified camera with objective grating (ICC8). ICC8 is located on Tenerife station of the double-station camera setup CILBO (Canary Island Long-Baseline Observatory). The pipeline software processes data with the standard calibration procedure (dark current, flat field, lens distortion corrections). While using the position of a meteor recorded by ICC7 camera (zero order), the position of the 1st order spectrum as a function of wavelength is computed Moreover, thanks to the double meteor observations carried by ICC7 (Tenerife) and ICC9 (La Palma), trajectory of a meteor and its orbit is determined. Which merged with simultaneously measurement of meteor spectrum from ICC8, allow us to identify the source of the meteoroid. Here, we report on preliminary results from a sample of meteor spectra collected by CILBO-ICC8 camera since 2012.

A detailed mechanistic fragmentation analysis of methamphetamine and select regioisomers by GC/MS.

PubMed

Sachs, Sandra B; Woo, Francis

2007-03-01

A novel ring-substituted methamphetamine regioisomer, N,alpha,4-trimethyl phenmethylamine, was synthesized in order to study the validity of proposed structures for various mass spectrometry (MS)-derived peaks in a methamphetamine fragmentation pattern. While other research efforts have studied aspects of methamphetamine in detail, a full fragmentation study has not been reported previously. In addition to showing molecular structures represented by fragment peaks, mechanisms for selected processes are detailed. An empirically derived procedure to easily determine by simple spectral peak pattern recognition the geometry of dimethyl- or ethyl-substituted immonium ions (RRC = N+ RR) where m/z = 58 is outlined. These results are platform independent for electron ionization (EI) instruments, but have also proven to be helpful in explaining spectral peaks observed in spectra from ion trap systems. The spectrum for the synthesized methamphetamine regioisomer was accurately predicted using this methodology. While this approach is useful in some casework, the converse may be more useful: when an unexpected or unusual peak pattern arises in a spectrum, being able to analyze it to determine the structure of the molecule. This paper gives an analyst the means to begin such retro-synthetic analyses.

Spectral Observations and Analyses of Low-Redshift Type Ia Supernovae

NASA Astrophysics Data System (ADS)

Silverman, Jeffrey Michael

The explosive deaths of stars, known as a supernovae (SNe), have been critical to our understanding of the Universe for centuries. An introduction to SNe, their importance in astronomy, and how we observe them is given in Chapter 1. In the second Chapter, I present the full BSNIP sample which consists of 1298 low-redshift (z ≤ 0.2) optical spectra of 582 SNe Ia observed from 1989 through the end of 2008. I describe our spectral classification scheme (using the SuperNova IDentification code, SNID; Blondin & Tonry 2007), utilizing my newly constructed set of SNID spectral templates. These templates allow me to accurately spectroscopically classify the entire BSNIP dataset, and by doing so I am able to reclassify a handful of objects as bona fide SNe Ia and a few other objects as members of some of the peculiar SN Ia subtypes. In fact, the BSNIP dataset includes spectra of nearly 90 spectroscopically peculiar SNe Ia. I also present spectroscopic host-galaxy redshifts of some SNe Ia where these values were previously unknown. I present measurements of spectral features of 432 low-redshift ( z < 0.1) optical spectra within 20 d of maximum brightness of 261 SNe Ia from the BSNIP sample in the third Chapter. I describe in detail my method of automated, robust spectral feature definition and measurement which expands upon similar previous studies. Using this procedure, I attempt to measure expansion velocities, (pseudo-)equivalent widths (pEWs), spectral feature depths, and fluxes at the center and endpoints of each of nine major spectral feature complexes. A sanity check of the consistency of the measurements is performed using the BSNIP data (as well as a separate spectral dataset). I investigate how velocity and pEW evolve with time and how they correlate with each other. Various spectral classification schemes are employed and quantitative spectral differences among the subclasses are investigated. Several ratios of pEW values are calculated and studied. Furthermore

Observation of Spectral Diffusion in Crystals Using Single Impurity Molecules

DTIC Science & Technology

1990-10-31

from 12pentacene photophysical parameters including intersystem crossing . Apparently (and not surprisingly), the local pentacene environment this... pentacene molecules inp-terphenyl, both stable as well as spectrally diffusing single molecules can be observed. 20 DISTRIBUTION/AVAILABILITY OF ABSTRACT 121...with ultrathin sublimed crystals have removed this obstacle. For the case of pentacene impurities in crystals of p-terphenyl, we observe two radically

Coherent control of alkali cluster fragmentation dynamics

NASA Astrophysics Data System (ADS)

Lindinger, Albrecht; Lupulescu, Cosmin; Bartelt, Andreas; Vajda, Štefan; Wöste, Ludger

2003-06-01

Metal clusters exhibit extraordinary chemical and catalytic properties, which sensitively depend upon their size. This behavior makes them interesting candidates for the real-time analysis of ultrafast photo-induced processes—ultimately leading to coherent control scenarii. We have performed transient multi-photon ionization experiments on small alkali clusters of different size in order to probe their wave packet dynamics, structural reorientations, charge transfers and dissociative events in different vibrationally excited electronic states including their ground state. The observed processes were highly dependent on the irradiated pulse parameters, like its phase, amplitude and duration; an emphasis to employ a feedback control system for generating the optimum pulse shapes. Their spectral and temporal behavior reflects interesting properties about the investigated system and the irradiated photochemical process. We present first the vibrational dynamics of bound, dissociated, and pre-dissociated electronically excited states of alkali dimers and trimers. The scheme for observing the wave packet dynamics in the electronic ground state using stimulated Raman-pumping is shown. Since the employed pulse parameters significantly influence the efficiency of the irradiated dynamic pathways photo-induced fragmentation experiments on bifurcating reaction channels were carried out. In these experiments different branching ionization and fragmentation pathways of electronically excited Na 2K were investigated. By employing an evolutionary algorithm for optimizing the phase and amplitude of the applied laser field, the yield of the resulting parent or fragment ions could significantly be influenced and interesting features could be concluded from the obtained optimum pulse shapes revealing the characteristic molecular oscillation period. Moreover, the influence on the optimal pulse shape due to fragmentation from larger clusters into NaK is obtained. The substructure of

Combined use of ESI-QqTOF-MS and ESI-QqTOF-MS/MS with mass-spectral library search for qualitative analysis of drugs.

PubMed

Pavlic, Marion; Libiseller, Kathrin; Oberacher, Herbert

2006-09-01

The potential of the combined use of ESI-QqTOF-MS and ESI-QqTOF-MS/MS with mass-spectral library search for the identification of therapeutic and illicit drugs has been evaluated. Reserpine was used for standardizing experimental conditions and for characterization of the performance of the applied mass spectrometric system. Experiments revealed that because of the mass accuracy, the stability of calibration, and the reproducibility of fragmentation, the QqTOF mass spectrometer is an appropriate platform for establishment of a tandem-mass-spectral library. Three-hundred and nineteen substances were used as reference samples to build the spectral library. For each reference compound, product-ion spectra were acquired at ten different collision-energy values between 5 eV and 50 eV. For identification of unknown compounds, a library search algorithm was developed. The closeness of matching between a measured product-ion spectrum and a spectrum stored in the library was characterized by a value called "match probability", which took into account the number of matched fragment ions, the number of fragment ions observed in the two spectra, and the sum of the intensity differences calculated for matching fragments. A large value for the match probability indicated a close match between the measured and the reference spectrum. A unique feature of the library search algorithm-an implemented spectral purification option-enables characterization of multi-contributor fragment-ion spectra. With the aid of this software feature, substances comprising only 1.0% of the total amount of binary mixtures were unequivocally assigned, in addition to the isobaric main contributors. The spectral library was successfully applied to the characterization of 39 forensic casework samples.

MID-INFRARED SPECTROPHOTOMETRIC OBSERVATIONS OF FRAGMENTS B AND C OF COMET 73P/SCHWASSMANN-WACHMANN 3

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harker, David E.; Woodward, Charles E.; Kelley, Michael S.

2011-01-15

We present mid-infrared spectra and images from the Gemini-N (+ Michelle) observations of fragments SW3-[B] and SW3-[C] of the ecliptic (Jupiter family) comet 73P/Schwassmann-Wachmann 3 pre-perihelion. We observed fragment B soon after an outburst event (between 2006 April 16-26 UT) and detected crystalline silicates. The mineralogy of both fragments was dominated by amorphous carbon and amorphous pyroxene. The grain size distribution (assuming a Hanner-modified power law) for fragment SW3-[B] has a peak grain radius of a{sub p} {approx} 0.5 {mu}m, and for fragment SW3-[C], a{sub p} {approx} 0.3 {mu}m; both values are larger than the peak grain radius of themore » size distribution for the dust ejected from ecliptic comet 9P/Tempel 1 during the Deep Impact event (a{sub p} = 0.2 {mu}m). The silicate-to-carbon ratio and the silicate crystalline mass fraction for the submicron to micron-sized portion of the grain size distribution on the nucleus of fragment SW3-[B] were 1.341{sup +0.250}{sub -0.253} and 0.335{sup +0.089}{sub -0.112}, respectively, while on the nucleus of fragment SW3-[C] they were 0.671{sup +0.076}{sub -0.076} and 0.257{sup +0.039}{sub -0.043}, respectively. The similarity in mineralogy and grain properties between the two fragments implies that 73P/Schwassmann-Wachmann 3 is homogeneous in composition. The slight differences in grain size distribution and silicate-to-carbon ratio between the two fragments likely arise because SW3-[B] was actively fragmenting throughout its passage while the activity in SW3-[C] was primarily driven by jets. The lack of diverse mineralogy in the fragments SW3-[B] and SW3-[C] of 73P/Schwassmann-Wachmann 3 along with the relatively larger peak in the coma grain size distribution suggests that the parent body of this comet may have formed in a region of the solar nebula with different environmental properties than the natal sites where comet C/1995 O1 (Hale-Bopp) and 9P/Tempel 1 nuclei aggregated.« less

Study of Structure and Small-Scale Fragmentation in TMC-1

NASA Technical Reports Server (NTRS)

Langer, W. D.; Velusamy, T.; Kuiper, T. B.; Levin, S.; Olsen, E.; Migenes, V.

1995-01-01

Large-scale C(sup 18)O maps show that the Taurus molecular cloud 1 (TMC-1) has numerous cores located along a ridge which extends about 12 minutes by at least 35 minutes. The cores traced by C(sup 18)O are about a few arcminutes (0.1-0.2 pc) in extent, typically contain about 0.5-3 solar mass, and are probably gravitationally bound. We present a detailed study of the small-scale fragmentary structure of one of these cores, called core D, within TMC-1 using very high spectral and spatial resolution maps of CCS and CS. The CCS lines are excellent tracers for investigating the density, temperature, and velocity structure in dense cores. The high spectral resolution, 0.008 km /s, data consist mainly of single-dish, Nyquist-sampled maps of CCS at 22 GHz with 45 sec spatial resolution taken with NASA's 70 m DSN antenna at Goldstone. The high spatial resolution spectral line maps were made with the Very Large Array (9 sec resolution) at 22 GHz and with the OVRO millimeter array in CCS and CS at 93 GHz and 98 GHz, respectively, with 6 sec resolution. These maps are supplemented with single-dish observations of CCS and CC(sup 34)S spectra at 33 GHz using a NASA 34 m DSN antenna, CCS 93 GHz, C(sup 34)S (2-1), and C(sup 18)O (1-0) single-dish observations made with the AT&T Bell Laboratories 7 m antenna. Our high spectral and spatial CCS and CS maps show that core D is highly fragmented. The single-dish CCS observations map out several clumps which range in size from approx. 45 sec to 90 sec (0.03-0.06 pc). These clumps have very narrow intrinsic line widths, 0.11-0.25 km/s, slightly larger than the thermal line width for CCS at 10 K, and masses about 0.03-0.2 solar mass. Interferometer observations of some of these clumps show that they have considerable additional internal structure, consisting of several condensations ranging in size from approx. 10 sec- 30 sec (0.007-0.021 pc), also with narrow line widths. The mass of these smallest fragments is of order 0.01 solar mass

In situ observation of ultrasonic cavitation-induced fragmentation of the primary crystals formed in Al alloys.

PubMed

Wang, Feng; Tzanakis, Iakovos; Eskin, Dmitry; Mi, Jiawei; Connolley, Thomas

2017-11-01

The cavitation-induced fragmentation of primary crystals formed in Al alloys were investigated for the first time by high-speed imaging using a novel experimental approach. Three representative primary crystal types, Al 3 Ti, Si and Al 3 V with different morphologies and mechanical properties were first extracted by deep etching of the corresponding Al alloys and then subjected to ultrasonic cavitation processing in distilled water. The dynamic interaction between the cavitation bubbles and primary crystals was imaged in situ and in real time. Based on the recorded image sequences, the fragmentation mechanisms of primary crystals were studied. It was found that there are three major mechanisms by which the primary crystals were fragmented by cavitation bubbles. The first one was a slow process via fatigue-type failure. A cyclic pressure exerted by stationary pulsating bubbles caused the propagation of a crack pre-existing in the primary crystal to a critical length which led to fragmentation. The second mechanism was a sudden process due to the collapse of bubbles in a passing cavitation cloud. The pressure produced upon the collapse of the cloud promoted rapid monotonic crack growth and fast fracture in the primary crystals. The third observed mechanism was normal bending fracture as a result of the high pressure arising from the collapse of a bubble cloud and the crack formation at the branch connection points of dendritic primary crystals. The fragmentation of dendrite branches due to the interaction between two freely moving dendritic primary crystals was also observed. A simplified fracture analysis of the observed phenomena was performed. The specific fragmentation mechanism for the primary crystals depended on their morphology and mechanical properties. Copyright © 2017 The Author(s). Published by Elsevier B.V. All rights reserved.

Hubble Space Telescope Observations of the Nucleus Fragment 73P/Schwassmann-Wachmann 3-B

NASA Astrophysics Data System (ADS)

Toth, I.; Lamy, P. L.; Weaver, H. A.

2003-05-01

The nucleus of 73P/Schwassmann-Wachmann 3 (73P/SW3), a Jupiter-Family comet, has non-tidally broken into at least three components A, B and C, in autumn 1995. Fragment B was detected with the Planetary Camera 2 of the Hubble Space Telescope on 26 November 2001. i.e., after the comet's perihelion passage on 27.9 January 2001, when it was at 3.25 AU from the Sun, 2.33 AU from the Earth, and at a solar phase angle of 7.4o. The high spatial resolution of the PC2 allowed to separate the signal of the faint nucleus fragment from that of its active coma, and we measured its R magnitude from our images taken with the F675W filter. Assuming a spherical body whose geometric albedo is 0.04 and a linear phase coefficient of 0.04 mag/deg for the R band, we derived an effective radius of 0.68+/-0.04 km. The short time span of our HST observations did not allow to determine its shape but the lower limit of its axial ratio a/b (assuming a prolate spheroid) is ˜1.16. From the pre-breakup radius of the original nucleus of 1.3 km determined by Boehnhardt et al. (2002: EMPl 90, 131), we found that the fractional volume of fragment B is about 14%. Its size of a few hundred meters, typical of fragments of other split comets, is probably too large for a primordial building block and indicate that it still is a conglomerate; further disintegration of this fragment remains possible. Its level of activity is remarkably high in spite of a heliocentric distance of ˜3.2 AU, just beyond the limit for sublimation of water ice (2.8 AU). We measured an Afρ of 19.6-23.2 cm but the determination of a dust production rate is precluded by the absence of gas production rates at the time of our observation. Ground-based observations performed in 2001 by Boehnhardt et al. (2002: EMPl 90, 131) indicate that another fragment (E) has already disappeared, and we conclude that this may well be short-term fate of fragment B as it may not survive its next perihelion passage in 2006. The tau-Herculids meteor

RXTE Observations of A1744-361: Correlated Spectral and Timing Behavior

NASA Technical Reports Server (NTRS)

Bhattacharyya, Sudip; Strohmayer, Tod E.; Swank, Jean H.; Markwardt, Craig B.

2007-01-01

We analyze Rossi X-ray Timing Explorer (RXTE) Proportional Counter Array (PCA) data of the transient low mass X-ray binary (LMXB) system A1744-361. We explore the X-ray intensity and spectral evolution of the source, perform timing analysis, and find that A1744-361 is a weak LMXB, that shows atoll behavior at high intensity states. The color-color diagram indicates that this LMXB was observed in a low intensity spectrally hard (low-hard) state and in a high intensity banana state. The low-hard state shows a horizontal pattern in the color-color diagram, and the previously reported dipper QPO appears only during this state. We also perform energy spectral analyses, and report the first detection of broad iron emission line and iron absorption edge from A1744-361.

Hyperspectral imagery for observing spectral signature change in Aspergillus flavus

NASA Astrophysics Data System (ADS)

DiCrispino, Kevin; Yao, Haibo; Hruska, Zuzana; Brabham, Kori; Lewis, David; Beach, Jim; Brown, Robert L.; Cleveland, Thomas E.

2005-11-01

Aflatoxin contaminated corn is dangerous for domestic animals when used as feed and cause liver cancer when consumed by human beings. Therefore, the ability to detect A. flavus and its toxic metabolite, aflatoxin, is important. The objective of this study is to measure A. flavus growth using hyperspectral technology and develop spectral signatures for A. flavus. Based on the research group's previous experiments using hyperspectral imaging techniques, it has been confirmed that the spectral signature of A. flavus is unique and readily identifiable against any background or surrounding surface and among other fungal strains. This study focused on observing changes in the A. flavus spectral signature over an eight-day growth period. The study used a visible-near-infrared hyperspectral image system for data acquisition. This image system uses focal plane pushbroom scanning for high spatial and high spectral resolution imaging. Procedures previously developed by the research group were used for image calibration and image processing. The results showed that while A. flavus gradually progressed along the experiment timeline, the day-to-day surface reflectance of A. flavus displayed significant difference in discreet regions of the wavelength spectrum. External disturbance due to environmental changes also altered the growth and subsequently changed the reflectance patterns of A. flavus.

Temporal Evolution of Ion Spectral Structures During a Geomagnetic Storm: Observations and Modeling

NASA Astrophysics Data System (ADS)

Ferradas, C. P.; Zhang, J.-C.; Spence, H. E.; Kistler, L. M.; Larsen, B. A.; Reeves, G. D.; Skoug, R. M.; Funsten, H. O.

2018-01-01

Using the Van Allen Probes/Helium, Oxygen, Proton, and Electron mass spectrometer, we perform a case study of the temporal evolution of ion spectral structures observed in the energy range of 1 to 50 keV throughout the geomagnetic storm of 2 October 2013. The ion spectral features are observed near the inner edge of the plasma sheet and are signatures of fresh transport from the plasma sheet into the inner magnetosphere. We find that the characteristics of the ion structures are determined by the intensity of the convection electric field. Prior to the beginning of the storm, the plasma sheet inner edge exhibits narrow nose spectral structures that vary little in energy across L values. Ion access to the inner magnetosphere during these times is limited to the nose energy bands. As convection is enhanced and large amounts of plasma are injected from the plasma sheet during the main phase of the storm, ion access occurs at a wide energy range, as no nose structures are observed. As the magnetosphere recovers from the storm, single noses and then multiple noses are observed once again. We use a model of ion drift and losses due to charge exchange to simulate the ion spectra and gain insight into the main observed features.

Interactions between colloidal silver and photosynthetic pigments located in cyanobacteria fragments and in solution.

PubMed

Siejak, Przemysław; Frackowiak, Danuta

2007-09-25

Changes in the yield of the fluorescence emitted by pigments of photosynthetic organisms could be used for the establishment of the presence of some toxic substances. The presence of colloidal metals can be indicated by enhancement of pigments' emission as a result of plasmons generation. The spectra of the pigments of cyanobacterium Synechocystis located in the bacterium fragments and in solutions with and without colloidal silver additions have been measured. The quantum yield of the pigments' fluorescence in solution has been observed to increase at some wavelength of excitation, while the fluorescence of the pigments in the bacteria fragments has been only quenched as a consequence of interactions with colloidal silver particles. Close contact between pigment molecules located in bacteria fragments and silver particles is probably not possible. We plan in future to investigate the influence of other, more typical metal pollutants of water, using similar spectral methods and several other photosynthetic bacteria pigments, in solution, in cell fragments and in the whole bacteria organisms.

Assuring the required spectroradiometric characteristics of the Fragment multispectral system

NASA Astrophysics Data System (ADS)

Bogdanov, A. A.; Kuzmin, V. I.; Mosevnina, L. G.; Popkov, A. V.; Sychev, A. G.; Tarnopolskii, V. I.

The paper examines methods and equipment for assuring the required spectroradiometric characteristics of the satellite-borne Fragment multispectral scanning system during development, fabrication, and autonomous and complex testing. These characteristics comprise: (1) the integrated sensitivity of the measuring channels to the spectral density of brightness (SDB): (2) the relative spectral sensitivity of the channels; (3) the effective spectral width of the sensitivity intervals and their position in the spectral range; (4) maximum values of SDB measured by the system in each spectral interval of sensitivity; (5) the SNR in each measuring channel; and (6) the relative rms of SDB measurements.

Inference of Surface Chemical and Physical Properties Using Mid-Infrared (MIR) Spectral Observations

NASA Technical Reports Server (NTRS)

Roush, Ted L.

2016-01-01

Reflected or emitted energy from solid surfaces in the solar system can provide insight into thermo-physical and chemical properties of the surface materials. Measurements have been obtained from instruments located on Earth-based telescopes and carried on several space missions. The characteristic spectral features commonly observed in Mid-Infrared (MIR) spectra of minerals will be reviewed, along with methods used for compositional interpretations of MIR emission spectra. The influence of surface grain size, and space weathering processes on MIR emissivity spectra will also be discussed. Methods used for estimating surface temperature, emissivity, and thermal inertias from MIR spectral observations will be reviewed.

Numerical observer for atherosclerotic plaque classification in spectral computed tomography

PubMed Central

Lorsakul, Auranuch; Fakhri, Georges El; Worstell, William; Ouyang, Jinsong; Rakvongthai, Yothin; Laine, Andrew F.; Li, Quanzheng

2016-01-01

Abstract. Spectral computed tomography (SCT) generates better image quality than conventional computed tomography (CT). It has overcome several limitations for imaging atherosclerotic plaque. However, the literature evaluating the performance of SCT based on objective image assessment is very limited for the task of discriminating plaques. We developed a numerical-observer method and used it to assess performance on discrimination vulnerable-plaque features and compared the performance among multienergy CT (MECT), dual-energy CT (DECT), and conventional CT methods. Our numerical observer was designed to incorporate all spectral information and comprised two-processing stages. First, each energy-window domain was preprocessed by a set of localized channelized Hotelling observers (CHO). In this step, the spectral image in each energy bin was decorrelated using localized prewhitening and matched filtering with a set of Laguerre–Gaussian channel functions. Second, the series of the intermediate scores computed from all the CHOs were integrated by a Hotelling observer with an additional prewhitening and matched filter. The overall signal-to-noise ratio (SNR) and the area under the receiver operating characteristic curve (AUC) were obtained, yielding an overall discrimination performance metric. The performance of our new observer was evaluated for the particular binary classification task of differentiating between alternative plaque characterizations in carotid arteries. A clinically realistic model of signal variability was also included in our simulation of the discrimination tasks. The inclusion of signal variation is a key to applying the proposed observer method to spectral CT data. Hence, the task-based approaches based on the signal-known-exactly/background-known-exactly (SKE/BKE) framework and the clinical-relevant signal-known-statistically/background-known-exactly (SKS/BKE) framework were applied for analytical computation of figures of merit (FOM

[A Method to Measure the Velocity of Fragments of Large Equivalence Explosion Field Based on Explosion Flame Spectral Analysis].

PubMed

Liu, Ji; Yu, Li-xia; Zhang, Bin; Zhao Dong-e; Liij, Xiao-yan; Wang, Heng-fei

2016-03-01

The deflagration fire lasting for a long time and covering a large area in the process of large equivalent explosion makes it difficult to obtain velocity parameters of fragments in the near-field. In order to solve the problem, it is proposed in this paper a photoelectric transceiver integrated method which utilize laser screen as the sensing area. The analysis of three different types of warhead explosion flame spectral distribution of radiation shows that 0.3 to 1.0 μm within the band is at relatively low intensity. On the basis of this, the optical system applies the principle of determining the fixed distance by measuring the time and the reflector technology, which consists of single longitudinal mode laser, cylindrical Fresnel lens, narrow-band filters and high-speed optical sensors, etc. The system has its advantage, such as transceiver, compact structure and combination of narrowband filter and single longitudinal mode laser, which can stop the spectrum of fire from suppressing the interference of background light effectively. Large amounts of experiments in different models and equivalent have been conducted to measure the velocity of difference kinds of warheads, obtaining higher signal-to-noise ratio of the waveform signal after a series of signal de-noising and recognition through NI company data acquisition and recording system. The experimental results show that this method can complete the accurately test velocity of fragments around center of the explosion. Specifically, the minimum size of fragments can be measured is 4 mm while the speed can be obtained is up to 1 200 m x s(-1) and the capture rate is better than 95% comparing with test results of target plate. At the same time, the system adopts Fresnel lenses-transparent to form a rectangular screen, which makes the distribution of rectangular light uniform in vertical direction, and the light intensity uniformity in horizontal direction is more than 80%. Consequently, the system can

Characterizing GEO Titan Transtage Fragmentations using Ground-based Measurements

NASA Technical Reports Server (NTRS)

Cowardin, H.; Anz-Meador, P.

2016-01-01

In a continued effort to better characterize the Geosynchronous Orbit (GEO) environment, NASA's Orbital Debris Program Office (ODPO) utilizes various ground-based optical assets to acquire photometric and spectral data of known debris associated with fragmentations in or near GEO. The Titan IIIC Transtage upper stage is known to have fragmented four times. Two of the four fragmentations were in GEO while a third Transtage fragmented in GEO transfer orbit. The forth fragmentation occurred in Low Earth Orbit. In order to better assess what may be causing these fragmentations, the NASA ODPO recently acquired a Titan Transtage test and display article that was previously in the custody of the 309th Aerospace Maintenance and Regeneration Group (AMARG) in Tucson, Arizona. After initial inspections at AMARG demonstrated that the test article was of sufficient fidelity to be of interest, the test article was brought to JSC to continue material analysis and historical documentation of the Titan Transtage. The Transtage will be a subject of forensic analysis using spectral measurements to compare with telescopic data; as well, a scale model will be created to use in the Optical Measurement Center for photometric analysis of an intact Transtage, including a BRDF. The following presentation will provide a review of the Titan Transtage, the current analysis that has been done to date, and the future work to be completed in support of characterizing the GEO and near GEO orbital debris environment.

Spectral variations of LMC X-3 observed with Ginga

NASA Technical Reports Server (NTRS)

Ebisawa, Ken; Makino, Fumiyoshi; Mitsuda, Kazuhisa; Belloni, Tomaso; Cowley, Anne P.; Schmidtke, Paul C.; Treves, Aldo

1993-01-01

The prime black hole candidate LMC X-3 was observed over three years with the Ginga satellite, and a characteristic spectral variation was found accompanying the periodic intensity variation of about 198 (or possibly about 99) days (Cowley et al., 1991). The energy spectrum of LMC X-3 consists of the soft, thermal component and the hard, power-law component, which are respectively dominant below and above about 9 keV. The soft component, which carries most of the X-ray intensity, shows a clear correlation between the intensity and the hardness, while the hard component varies independently of the soft component. It was found that the spectral variation of the soft component is well described by an optically thick accretion disk model with a remarkably constant innermost radius and variable mass accretion rate. The constancy of the innermost radius suggests it is related to the mass of the central object.

Temporal evolution of ion spectral structures during a geomagnetic storm: Observations and modeling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ferradas Alva, Cristian Pablo; Zhang, J.-C.; Spence, H. E.

Using the Van Allen Probes/Helium, Oxygen, Proton, and Electron (HOPE) mass spectrometer, we perform a case study of the temporal evolution of ion spectral structures observed in the energy range of 1- ~50 keV throughout the geomagnetic storm of 2 October 2013. The ion spectral features are observed near the inner edge of the plasma sheet and are signatures of fresh transport from the plasma sheet into the inner magnetosphere. We find that the characteristics of the ion structures are determined by the intensity of the convection electric field. Prior to the beginning of the storm, the plasma sheet innermore » edge exhibits narrow nose spectral structures that vary little in energy across L values. Ion access to the inner magnetosphere during these times is limited to the nose energy bands. As convection is enhanced and large amounts of plasma are injected from the plasma sheet during the main phase of the storm, ion access occurs at a wide energy range, as no nose structures are observed. Here, as the magnetosphere recovers from the storm, single noses and then multiple noses are observed once again. Lastly, we use a model of ion drift and losses due to charge exchange to simulate the ion spectra and gain insight into the main observed features.« less

Temporal evolution of ion spectral structures during a geomagnetic storm: Observations and modeling

DOE PAGES

Ferradas Alva, Cristian Pablo; Zhang, J.-C.; Spence, H. E.; ...

2017-12-13

Using the Van Allen Probes/Helium, Oxygen, Proton, and Electron (HOPE) mass spectrometer, we perform a case study of the temporal evolution of ion spectral structures observed in the energy range of 1- ~50 keV throughout the geomagnetic storm of 2 October 2013. The ion spectral features are observed near the inner edge of the plasma sheet and are signatures of fresh transport from the plasma sheet into the inner magnetosphere. We find that the characteristics of the ion structures are determined by the intensity of the convection electric field. Prior to the beginning of the storm, the plasma sheet innermore » edge exhibits narrow nose spectral structures that vary little in energy across L values. Ion access to the inner magnetosphere during these times is limited to the nose energy bands. As convection is enhanced and large amounts of plasma are injected from the plasma sheet during the main phase of the storm, ion access occurs at a wide energy range, as no nose structures are observed. Here, as the magnetosphere recovers from the storm, single noses and then multiple noses are observed once again. Lastly, we use a model of ion drift and losses due to charge exchange to simulate the ion spectra and gain insight into the main observed features.« less

Assessing Spectral Shortwave Cloud Observations at the Southern Great Plains Facility

NASA Technical Reports Server (NTRS)

McBride, P. J.; Marshak, A.; Wiscombe, W. J.; Flynn, C. J.; Vogelmann, A. M.

2012-01-01

The Atmospheric Radiation Measurement (ARM) program (now Atmospheric System Research) was established, in part, to improve radiation models so that they could be used reliably to compute radiation fluxes through the atmosphere, given knowledge of the surface albedo, atmospheric gases, and the aerosol and cloud properties. Despite years of observations, discrepancies still exist between radiative transfer models and observations, particularly in the presence of clouds. Progress has been made at closing discrepancies in the spectral region beyond 3 micron, but the progress lags at shorter wavelengths. Ratios of observed visible and near infrared cloud albedo from aircraft and satellite have shown both localized and global discrepancies between model and observations that are, thus far, unexplained. The capabilities of shortwave surface spectrometry have been improved in recent years at the Southern Great Plains facility (SGP) of the ARM Climate Research Facility through the addition of new instrumentation, the Shortwave Array Spectroradiometer, and upgrades to existing instrumentation, the Shortwave Spectroradiometer and the Rotating Shadowband Spectroradiometer. An airborne-based instrument, the HydroRad Spectroradiometer, was also deployed at the ARM site during the Routine ARM Aerial Facility Clouds with Low Optical Water Depths (CLOWD) Optical Radiative Observations (RACORO) field campaign. Using the new and upgraded spectral observations along with radiative transfer models, cloud scenes at the SGP are presented with the goal of characterizing the instrumentation and the cloud fields themselves.

Thermal History and Fragmentation of Ureilitic Asteroids: Insights from the Almahata Sitta Fall

NASA Technical Reports Server (NTRS)

Herrin, J. S.; Ito, M.; Zolensky, M. E.; Mittlefehldt, D. M.; Jenniskens, P. M.; Shaddad, M. H.

2010-01-01

Prior to recovery the Almahata Sitta fall was observed as the asteroid 2008 TC3 on an Earth-bound trajectory, providing a unique link between spectral data and ureilite composition. The event has also provided insight into the nature of ureilitic objects in space. In particular, the large size (4 m3) and low density (2.2 g/cm3) of the object combined with near-complete disintegration upon entry suggest a porous and loosely-consolidated body [1]. Accordingly, recovered fragments are small in size (1.5-283g) and represent several different ureilite lithologies. Some recovered fragments appear brecciated while others do not. We use chemical and mineralogic data to dissect the thermal history of this new ureilite, then use this information to compare the inferred size of fragments within the asteroid to those initially dislodged from a common ureilite parent body (UPB).

Spectral broadening of VLF transmitter signals observed on DE 1 - A quasi-electrostatic phenomenon?

NASA Technical Reports Server (NTRS)

Inan, U. S.; Bell, T. F.

1985-01-01

Spectrally broadened VLF transmitter signals are observed on the DE 1 satellite using alternatively both electric and magnetic field sensors. It is found that at times when the electric field component undergoes significant bandwidth expansion (up to about 110 Hz) the magnetic field component has a bandwidth of less than 10 Hz. The results support the theory that the off-carrier components are quasi-electrostatic in nature. Measurement of the absolute E and B field magnitudes of the broadened signals are used to determine the wave Poynting vector. It is found that the observed power levels can be understood without invoking any strong amplification process that operates in conjunction with the spectral broadening. The implications of this finding in distinguishing among the various possible mechanisms for spectral broadening are discussed.

New Observational Evidence of Active Asteroid P/2010 A2: Slow Rotation of the Largest Fragment

NASA Astrophysics Data System (ADS)

Kim, Yoonyoung; Ishiguro, Masateru; Lee, Myung Gyoon

2017-06-01

We report new observations of the active asteroid P/2010 A2 taken when it made its closest approach to Earth (1.06 au in 2017 January) after its first discovery in 2010. Despite a crucial role of the rotational period in clarifying its ejection mechanism, the rotational property of P/2010 A2 has not yet been studied due to the extreme faintness of this tiny object (∼120 m in diameter). Taking advantage of the best observing geometry since the discovery, we succeed in obtaining the rotational light curve of the largest fragment with Gemini/GMOS-N. We find that (1) the largest fragment has a double-peaked period of 11.36 ± 0.02 hr spinning much slower than its critical spin period; (2) the largest fragment is a highly elongated object (a/b ≥ 1.94) with an effective radius of {61.9}-9.2+16.8 m; (3) the size distribution of the ejecta follows a broken power law (the power indices of the cumulative size distributions of the dust and fragments are 2.5 ± 0.1 and 5.2 ± 0.1, respectively); (4) the mass ratio of the largest fragment to the total ejecta is around 0.8; and (5) the dust cloud morphology is in agreement with the anisotropic ejection model in Kim et al. These new characteristics of the ejecta obtained in this work are favorable to the impact shattering hypothesis.

Characterizing GEO Titan IIIC Transtage Fragmentations using Ground-Based and Telescopic Measurements

NASA Technical Reports Server (NTRS)

Cowardin, Heather; Anz-Meador, Phillip; Reyes, Jacqueline A.

2017-01-01

In a continued effort to better characterize the geosynchronous orbit (GEO) environment, NASA's Orbital Debris Program Office (ODPO) utilizes various ground-based optical assets to acquire photometric and spectral data of known debris associated with fragmentations in or near GEO. The Titan IIIC Transtage upper stage is known to have fragmented four times. Two of the four fragmentations were in GEO while the Transtage fragmented a third time in GEO transfer orbit. The forth fragmentation occurred in low Earth orbit. To better assess and characterize these fragmentations, the NASA ODPO acquired a Titan Transtage test and display article previously in the custody of the 309th Aerospace Maintenance and Regeneration Group (AMARG) in Tucson, Arizona. After initial inspections at AMARG demonstrated that it was of sufficient fidelity to be of interest, the test article was brought to NASA Johnson Space Center (JSC) to continue material analysis and historical documentation. The Transtage has undergone two separate spectral measurement campaigns to characterize the reflectance spectroscopy of historical aerospace materials. These data have been incorporated into the NASA Spectral Database, with the goal of using telescopic data comparisons for potential material identification. A Light Detection and Ranging (LIDAR) system scan also has been completed and a scale model has been created for use in the Optical Measurement Center (OMC) for photometric analysis of an intact Transtage, including bidirectional reflectance distribution function (BRDF) measurements. An historical overview of the Titan IIIC Transtage, the current analysis that has been done to date, and the future work to be completed in support of characterizing the GEO and near GEO orbital debris environment will be discussed in the subsequent presentation.

Characterizing GEO Titan IIIC Transtage Fragmentations Using Ground-Based and Telescopic Measurements

NASA Technical Reports Server (NTRS)

Cowardin, H.

2017-01-01

In a continued effort to better characterize the Geosynchronous Orbit (GEO) environment, NASA's Orbital Debris Program Office (ODPO) utilizes various ground-based optical assets to acquire photometric and spectral data of known debris associated with fragmentations in or near GEO. The Titan IIIC Transtage upper stage is known to have fragmented four times. Two of the four fragmentations were in GEO while a third Transtage fragmented in GEO transfer orbit. The forth fragmentation occurred in Low Earth Orbit. In order to better assess and characterize these fragmentations, the NASA ODPO acquired a Titan Transtage test and display article previously in the custody of the 309th Aerospace Maintenance and Regeneration Group (AMARG) in Tucson, Arizona. After initial inspections at AMARG demonstrated that the test article was of sufficient fidelity to be of interest, the test article was brought to JSC to continue material analysis and historical documentation of the Titan Transtage. The Transtage has been subject to two separate spectral measurement campaigns to characterize the reflectance spectroscopy of historical aerospace materials. These data have been incorporated into the NASA Spectral Database, the goal being to enable comparison with telescopic data and potential material identification. A LIDAR scan has been completed and a scale model has been created for use in the Optical Measurement Center for photometric analysis of an intact Transtage, including a BRDF. An historical overview of the Titan IIIC Transtage, the current analysis that has been done to date, and the future work to be completed in support of characterizing the GEO and near GEO orbital debris environment will be discussed in the subsequent presentation.

Characterizing GEO Titan IIIC Transtage Fragmentations Using Ground-based and Telescopic Measurements

NASA Astrophysics Data System (ADS)

Cowardin, H.; Anz-Meador, P.; Reyes, J. A.

In a continued effort to better characterize the geosynchronous orbit (GEO) environment, NASA’s Orbital Debris Program Office (ODPO) utilizes various ground-based optical assets to acquire photometric and spectral data of known debris associated with fragmentations in or near GEO. The Titan IIIC Transtage upper stage is known to have fragmented four times. Two of the four fragmentations were in GEO while the Transtage fragmented a third time in GEO transfer orbit. The forth fragmentation occurred in low Earth orbit. To better assess and characterize these fragmentations, the NASA ODPO acquired a Titan Transtage test and display article previously in the custody of the 309th Aerospace Maintenance and Regeneration Group (AMARG) in Tucson, Arizona. After initial inspections at AMARG demonstrated that it was of sufficient fidelity to be of interest, the test article was brought to NASA Johnson Space Center (JSC) to continue material analysis and historical documentation. The Transtage has undergone two separate spectral measurement campaigns to characterize the reflectance spectroscopy of historical aerospace materials. These data have been incorporated into the NASA Spectral Database, with the goal of using telescopic data comparisons for potential material identification. A Light Detection and Ranging (LIDAR) system scan also has been completed and a scale model has been created for use in the Optical Measurement Center (OMC) for photometric analysis of an intact Transtage, including bidirectional reflectance distribution function (BRDF) measurements. An historical overview of the Titan IIIC Transtage, the current analysis that has been done to date, and the future work to be completed in support of characterizing the GEO and near GEO orbital debris environment will be discussed in the subsequent presentation.

MaRaCluster: A Fragment Rarity Metric for Clustering Fragment Spectra in Shotgun Proteomics.

PubMed

The, Matthew; Käll, Lukas

2016-03-04

Shotgun proteomics experiments generate large amounts of fragment spectra as primary data, normally with high redundancy between and within experiments. Here, we have devised a clustering technique to identify fragment spectra stemming from the same species of peptide. This is a powerful alternative method to traditional search engines for analyzing spectra, specifically useful for larger scale mass spectrometry studies. As an aid in this process, we propose a distance calculation relying on the rarity of experimental fragment peaks, following the intuition that peaks shared by only a few spectra offer more evidence than peaks shared by a large number of spectra. We used this distance calculation and a complete-linkage scheme to cluster data from a recent large-scale mass spectrometry-based study. The clusterings produced by our method have up to 40% more identified peptides for their consensus spectra compared to those produced by the previous state-of-the-art method. We see that our method would advance the construction of spectral libraries as well as serve as a tool for mining large sets of fragment spectra. The source code and Ubuntu binary packages are available at https://github.com/statisticalbiotechnology/maracluster (under an Apache 2.0 license).

What Do Millimeter Continuum and Spectral Line Observations Tell Us about Solar System Bodies?

NASA Technical Reports Server (NTRS)

Milam, Stefanie N.

2013-01-01

Solar system objects are generally cold and radiate at low frequencies and tend to have strong molecular rotational transitions. Millimeter continuum and spectral line observations provide detailed information for nearly all solar system bodies. At these wavelengths, details of the bulk physical composition of icy surfaces, the size and albedo of small objects, the composition of planetary atmospheres can be measured as well as monitoring of time variable phenomena for extended periods (not restricted to nighttime observations), etc. Major issues in solar system science can be addressed by observations in the millimeter/sub-millimeter regime such as the origin of the solar system (isotope ratios, composition) and the evolution of solar system objects (dynamics, atmospheric constituents, etc). ALMA s exceptional sensitivity, large spectral bandwidth, high spectral resolution, and angular resolution (down to 10 milliarcsec) will enable researchers for the first time to better resolve the smallest bodies in the solar system and provide detailed maps of the larger objects. Additionally, measurements with nearly 8 GHz of instantaneous bandwidth to fully characterize solar system object s spectrum and detect trace species. The spatial information and line profiles can be obtained over 800 GHz of bandwidth in 8 receiver bands to not only assist in the identification of spectral lines and emission components for a given species but also to help elucidate the chemistry of the extraterrestrial bodies closest to us.

PCA determination of the radiometric noise of high spectral resolution infrared observations from spectral residuals: Application to IASI

NASA Astrophysics Data System (ADS)

Serio, C.; Masiello, G.; Camy-Peyret, C.; Jacquette, E.; Vandermarcq, O.; Bermudo, F.; Coppens, D.; Tobin, D.

2018-02-01

The problem of characterizing and estimating the instrumental or radiometric noise of satellite high spectral resolution infrared spectrometers directly from Earth observations is addressed in this paper. An approach has been developed, which relies on the Principal Component Analysis (PCA) with a suitable criterion to select the optimal number of PC scores. Different selection criteria have been set up and analysed, which is based on the estimation theory of Least Squares and/or Maximum Likelihood Principle. The approach is independent of any forward model and/or radiative transfer calculations. The PCA is used to define an orthogonal basis, which, in turn, is used to derive an optimal linear reconstruction of the observations. The residual vector that is the observation vector minus the calculated or reconstructed one is then used to estimate the instrumental noise. It will be shown that the use of the spectral residuals to assess the radiometric instrumental noise leads to efficient estimators, which are largely independent of possible departures of the true noise from that assumed a priori to model the observational covariance matrix. Application to the Infrared Atmospheric Sounder Interferometer (IASI) has been considered. A series of case studies has been set up, which make use of IASI observations. As a major result, the analysis confirms the high stability and radiometric performance of IASI. The approach also proved to be efficient in characterizing noise features due to mechanical micro-vibrations of the beam splitter of the IASI instrument.

Spectral distinctions between the leading and trailing hemispheres of Callisto - New observations

NASA Technical Reports Server (NTRS)

Calvin, Wendy M.; Clark, Roger N.

1993-01-01

Recent spectral observations of both the leading and trailing hemispheres of Callisto confirm the conclusions of Calvin and Clark (1991) that the water ice is typically large-grained, and the general spectral trend from 3 to 43 microns is caused by an adsorbed water band associated with hydrous minerals. On the leading hemisphere, a broad absorption near 3.4 microns was definitively identified and interpreted as being caused by fine-grained water ice. This band, coupled with the slope in the region from 2 to 2.5 microns, is indicative of a small amount, on the order of 1 to 2 percent, of fine-grained ice on the leading side. It is suggested that in the longer wavelength spectral region on the leading hemisphere an additional band correlated with NH4-bearing clays may be indicated.

Hot-stage microscopy for determination of API fragmentation: comparison with other methods.

PubMed

Šimek, Michal; Grünwaldová, Veronika; Kratochvíl, Bohumil

2016-08-01

Although the fragmentation of the active pharmaceutical ingredient (API) is a phenomenon that is mentioned in many literature sources, no well-suited analytical tools for its investigation are currently known. We used the hot-stage microscopy method, already presented in our previous work, and studied the real fragmentation of the tadalafil particles in model tablets which were prepared under different compaction pressures. The morphology, spectral imaging and evaluation of plastic and elastic energies were also analyzed to support the hot-stage method. The prepared blend of tadalafil and excipients was compacted under a several forces from 5 to 35 kN to reveal the trend of fragmentation. The exact fragmentation of tadalafil with increased compaction pressure was revealed by the hot-stage microscopic method and it was in good agreement with plastic and elastic energies. Conversely, spectral imaging, which is being used for this analysis, was considered to be inaccurate methodology as mainly agglomerates, not individual particles, were measured. The availability of the hot-stage microscopic method equips pharmaceutical scientists with an in vitro assessment technique that will more reliably determine the fragmentation of the API in finished tablets and the behavior of the particles when compacted.

Binary Population and Spectral Synthesis Version 2.1: Construction, Observational Verification, and New Results

NASA Astrophysics Data System (ADS)

Eldridge, J. J.; Stanway, E. R.; Xiao, L.; McClelland, L. A. S.; Taylor, G.; Ng, M.; Greis, S. M. L.; Bray, J. C.

2017-11-01

The Binary Population and Spectral Synthesis suite of binary stellar evolution models and synthetic stellar populations provides a framework for the physically motivated analysis of both the integrated light from distant stellar populations and the detailed properties of those nearby. We present a new version 2.1 data release of these models, detailing the methodology by which Binary Population and Spectral Synthesis incorporates binary mass transfer and its effect on stellar evolution pathways, as well as the construction of simple stellar populations. We demonstrate key tests of the latest Binary Population and Spectral Synthesis model suite demonstrating its ability to reproduce the colours and derived properties of resolved stellar populations, including well-constrained eclipsing binaries. We consider observational constraints on the ratio of massive star types and the distribution of stellar remnant masses. We describe the identification of supernova progenitors in our models, and demonstrate a good agreement to the properties of observed progenitors. We also test our models against photometric and spectroscopic observations of unresolved stellar populations, both in the local and distant Universe, finding that binary models provide a self-consistent explanation for observed galaxy properties across a broad redshift range. Finally, we carefully describe the limitations of our models, and areas where we expect to see significant improvement in future versions.

Improving a Spectral Bin Microphysical Scheme Using TRMM Satellite Observations

NASA Technical Reports Server (NTRS)

Li, Xiaowen; Tao, Wei-Kuo; Matsui, Toshihisa; Liu, Chuntao; Masunaga, Hirohiko

2010-01-01

Comparisons between cloud model simulations and observations are crucial in validating model performance and improving physical processes represented in the mod Tel.hese modeled physical processes are idealized representations and almost always have large rooms for improvements. In this study, we use data from two different sensors onboard TRMM (Tropical Rainfall Measurement Mission) satellite to improve the microphysical scheme in the Goddard Cumulus Ensemble (GCE) model. TRMM observed mature-stage squall lines during late spring, early summer in central US over a 9-year period are compiled and compared with a case simulation by GCE model. A unique aspect of the GCE model is that it has a state-of-the-art spectral bin microphysical scheme, which uses 33 different bins to represent particle size distribution of each of the seven hydrometeor species. A forward radiative transfer model calculates TRMM Precipitation Radar (PR) reflectivity and TRMM Microwave Imager (TMI) 85 GHz brightness temperatures from simulated particle size distributions. Comparisons between model outputs and observations reveal that the model overestimates sizes of snow/aggregates in the stratiform region of the squall line. After adjusting temperature-dependent collection coefficients among ice-phase particles, PR comparisons become good while TMI comparisons worsen. Further investigations show that the partitioning between graupel (a high-density form of aggregate), and snow (a low-density form of aggregate) needs to be adjusted in order to have good comparisons in both PR reflectivity and TMI brightness temperature. This study shows that long-term satellite observations, especially those with multiple sensors, can be very useful in constraining model microphysics. It is also the first study in validating and improving a sophisticated spectral bin microphysical scheme according to long-term satellite observations.

Humidity Effects on Fragmentation in Plasma-Based Ambient Ionization Sources

NASA Astrophysics Data System (ADS)

Newsome, G. Asher; Ackerman, Luke K.; Johnson, Kevin J.

2016-01-01

Post-plasma ambient desorption/ionization (ADI) sources are fundamentally dependent on surrounding water vapor to produce protonated analyte ions. There are two reports of humidity effects on ADI spectra. However, it is unclear whether humidity will affect all ADI sources and analytes, and by what mechanism humidity affects spectra. Flowing atmospheric pressure afterglow (FAPA) ionization and direct analysis in real time (DART) mass spectra of various surface-deposited and gas-phase analytes were acquired at ambient temperature and pressure across a range of observed humidity values. A controlled humidity enclosure around the ion source and mass spectrometer inlet was used to create programmed humidity and temperatures. The relative abundance and fragmentation of molecular adduct ions for several compounds consistently varied with changing ambient humidity and also were controlled with the humidity enclosure. For several compounds, increasing humidity decreased protonated molecule and other molecular adduct ion fragmentation in both FAPA and DART spectra. For others, humidity increased fragment ion ratios. The effects of humidity on molecular adduct ion fragmentation were caused by changes in the relative abundances of different reagent protonated water clusters and, thus, a change in the average difference in proton affinity between an analyte and the population of water clusters. Control of humidity in ambient post-plasma ion sources is needed to create spectral stability and reproducibility.

Humidity Effects on Fragmentation in Plasma-Based Ambient Ionization Sources.

PubMed

Newsome, G Asher; Ackerman, Luke K; Johnson, Kevin J

2016-01-01

Post-plasma ambient desorption/ionization (ADI) sources are fundamentally dependent on surrounding water vapor to produce protonated analyte ions. There are two reports of humidity effects on ADI spectra. However, it is unclear whether humidity will affect all ADI sources and analytes, and by what mechanism humidity affects spectra. Flowing atmospheric pressure afterglow (FAPA) ionization and direct analysis in real time (DART) mass spectra of various surface-deposited and gas-phase analytes were acquired at ambient temperature and pressure across a range of observed humidity values. A controlled humidity enclosure around the ion source and mass spectrometer inlet was used to create programmed humidity and temperatures. The relative abundance and fragmentation of molecular adduct ions for several compounds consistently varied with changing ambient humidity and also were controlled with the humidity enclosure. For several compounds, increasing humidity decreased protonated molecule and other molecular adduct ion fragmentation in both FAPA and DART spectra. For others, humidity increased fragment ion ratios. The effects of humidity on molecular adduct ion fragmentation were caused by changes in the relative abundances of different reagent protonated water clusters and, thus, a change in the average difference in proton affinity between an analyte and the population of water clusters. Control of humidity in ambient post-plasma ion sources is needed to create spectral stability and reproducibility.

Model Calculations with Excited Nuclear Fragmentations and Implications of Current GCR Spectra

NASA Astrophysics Data System (ADS)

Saganti, Premkumar

As a result of the fragmentation process in nuclei, energy from the excited states may also contribute to the radiation damage on the cell structure. Radiation induced damage to the human body from the excited states of oxygen and several other nuclei and its fragments are of a concern in the context of the measured abundance of the current galactic cosmic rays (GCR) environment. Nuclear Shell model based calculations of the Selective-Core (Saganti-Cucinotta) approach are being expanded for O-16 nuclei fragments into N-15 with a proton knockout and O-15 with a neutron knockout are very promising. In our on going expansions of these nuclear fragmentation model calculations and assessments, we present some of the prominent nuclei interactions from a total of 190 isotopes that were identified for the current model expansion based on the Quantum Multiple Scattering Fragmentation Model (QMSFRG) of Cucinotta. Radiation transport model calculations with the implementation of these energy level spectral characteristics are expected to enhance the understanding of radiation damage at the cellular level. Implications of these excited energy spectral calculations in the assessment of radiation damage to the human body may provide enhanced understanding of the space radiation risk assessment.

Fragmentation of Massive Dense Cores Down to <~ 1000 AU: Relation between Fragmentation and Density Structure

NASA Astrophysics Data System (ADS)

Palau, Aina; Estalella, Robert; Girart, Josep M.; Fuente, Asunción; Fontani, Francesco; Commerçon, Benoit; Busquet, Gemma; Bontemps, Sylvain; Sánchez-Monge, Álvaro; Zapata, Luis A.; Zhang, Qizhou; Hennebelle, Patrick; di Francesco, James

2014-04-01

In order to shed light on the main physical processes controlling fragmentation of massive dense cores, we present a uniform study of the density structure of 19 massive dense cores, selected to be at similar evolutionary stages, for which their relative fragmentation level was assessed in a previous work. We inferred the density structure of the 19 cores through a simultaneous fit of the radial intensity profiles at 450 and 850 μm (or 1.2 mm in two cases) and the spectral energy distribution, assuming spherical symmetry and that the density and temperature of the cores decrease with radius following power-laws. Even though the estimated fragmentation level is strictly speaking a lower limit, its relative value is significant and several trends could be explored with our data. We find a weak (inverse) trend of fragmentation level and density power-law index, with steeper density profiles tending to show lower fragmentation, and vice versa. In addition, we find a trend of fragmentation increasing with density within a given radius, which arises from a combination of flat density profile and high central density and is consistent with Jeans fragmentation. We considered the effects of rotational-to-gravitational energy ratio, non-thermal velocity dispersion, and turbulence mode on the density structure of the cores, and found that compressive turbulence seems to yield higher central densities. Finally, a possible explanation for the origin of cores with concentrated density profiles, which are the cores showing no fragmentation, could be related with a strong magnetic field, consistent with the outcome of radiation magnetohydrodynamic simulations. The James Clerk Maxwell Telescope is operated by the Joint Astronomy Centre on behalf of the Science and Technology Facilities Council of the United Kingdom, the Netherlands Organisation for Scientific Research, and the National Research Council of Canada.

Simultaneous Spectral and Timing Observations of Accreting Neuron Stars

NASA Technical Reports Server (NTRS)

Kaaret, P.; Oliversen, Ronald J. (Technical Monitor)

2002-01-01

The goal of this proposal is to perform simultaneous x-ray spectral and millisecond timing observations of accreting neutron stars to further our understanding of their accretion dynamics and in the hope of using these systems as probes of the physics of strong gravitational fields. NAG5-9104 is the successor grant to NAG5-8408. Observations using the Rossi X-Ray Timing Explorer (RXTE) and BeppoSAX were performed of 4U1702-429, 4U1735-44, and Cyg X-2. Unfortunately, only a small fraction of the approved observing time was obtained for the first two targets and the data are of limited scientific value. Data analysis has been completed on the observations of Cyg X-2. We discovered a correlation between the frequency of the horizontal branch oscillations (HBO) and a soft, thermal component of the x-ray spectrum likely associated with emission from the accretion disk. This correlation may place constraints on models of the oscillations. A paper based on these results appeared in the Astrophysical Journal.

Understanding the Long-Term Spectral Variability of Cygnus X-1 from BATSE and ASM Observations

NASA Technical Reports Server (NTRS)

Zdziarski, Andrzej A.; Poutanen, Juri; Paciesas, William S.; Wen, Linqing; Six, N. Frank (Technical Monitor)

2002-01-01

We present a spectral analysis of observations of Cygnus X-1 by the RXTE/ASM (1.5-12 keV) and CGRO/BATSE (20-300 keV), including about 1200 days of simultaneous data. We find a number of correlations between intensities and hardnesses in different energy bands from 1.5 keV to 300 keV. In the hard (low) spectral state, there is a negative correlation between the ASM 1.5-12 keV flux and the hardness at any energy. In the soft (high) spectral state, the ASM flux is positively correlated with the ASM hardness (as previously reported) but uncorrelated with the BATSE hardness. In both spectral states, the BATSE hardness correlates with the flux above 100 keV, while it shows no correlation with the flux in the 20-100 keV range. At the same time, there is clear correlation between the BATSE fluxes below and above 100 keV. In the hard state, most of the variability can be explained by softening the overall spectrum with a pivot at approximately 50 keV. The observations show that there has to be another, independent variability pattern of lower amplitude where the spectral shape does not change when the luminosity changes. In the soft state, the variability is mostly caused by a variable hard (Comptonized) spectral component of a constant shape superimposed on a constant soft blackbody component. These variability patterns are in agreement with the dependence of the rms variability on the photon energy in the two states. We interpret the observed correlations in terms of theoretical Comptonization models. In the hard state, the variability appears to be driven mostly by changing flux in seed photons Comptonized in a hot thermal plasma cloud with an approximately constant power supply. In the soft state, the variability is consistent with flares of hybrid, thermal/nonthermal, plasma with variable power above a stable cold disk. Also, based on broadband pointed observations simultaneous with those of the ASM and BATSE, we find the intrinsic bolometric luminosity increases by a

A Linear Relationship between Crystal Size and Fragment Binding Time Observed Crystallographically: Implications for Fragment Library Screening Using Acoustic Droplet Ejection

PubMed Central

Birone, Claire; Brown, Maria; Hernandez, Jesus; Neff, Sherry; Williams, Daniel; Allaire, Marc; Orville, Allen M.; Sweet, Robert M.; Soares, Alexei S.

2014-01-01

High throughput screening technologies such as acoustic droplet ejection (ADE) greatly increase the rate at which X-ray diffraction data can be acquired from crystals. One promising high throughput screening application of ADE is to rapidly combine protein crystals with fragment libraries. In this approach, each fragment soaks into a protein crystal either directly on data collection media or on a moving conveyor belt which then delivers the crystals to the X-ray beam. By simultaneously handling multiple crystals combined with fragment specimens, these techniques relax the automounter duty-cycle bottleneck that currently prevents optimal exploitation of third generation synchrotrons. Two factors limit the speed and scope of projects that are suitable for fragment screening using techniques such as ADE. Firstly, in applications where the high throughput screening apparatus is located inside the X-ray station (such as the conveyor belt system described above), the speed of data acquisition is limited by the time required for each fragment to soak into its protein crystal. Secondly, in applications where crystals are combined with fragments directly on data acquisition media (including both of the ADE methods described above), the maximum time that fragments have to soak into crystals is limited by evaporative dehydration of the protein crystals during the fragment soak. Here we demonstrate that both of these problems can be minimized by using small crystals, because the soak time required for a fragment hit to attain high occupancy depends approximately linearly on crystal size. PMID:24988328

A linear relationship between crystal size and fragment binding time observed crystallographically: implications for fragment library screening using acoustic droplet ejection.

PubMed

Cole, Krystal; Roessler, Christian G; Mulé, Elizabeth A; Benson-Xu, Emma J; Mullen, Jeffrey D; Le, Benjamin A; Tieman, Alanna M; Birone, Claire; Brown, Maria; Hernandez, Jesus; Neff, Sherry; Williams, Daniel; Allaire, Marc; Orville, Allen M; Sweet, Robert M; Soares, Alexei S

2014-01-01

High throughput screening technologies such as acoustic droplet ejection (ADE) greatly increase the rate at which X-ray diffraction data can be acquired from crystals. One promising high throughput screening application of ADE is to rapidly combine protein crystals with fragment libraries. In this approach, each fragment soaks into a protein crystal either directly on data collection media or on a moving conveyor belt which then delivers the crystals to the X-ray beam. By simultaneously handling multiple crystals combined with fragment specimens, these techniques relax the automounter duty-cycle bottleneck that currently prevents optimal exploitation of third generation synchrotrons. Two factors limit the speed and scope of projects that are suitable for fragment screening using techniques such as ADE. Firstly, in applications where the high throughput screening apparatus is located inside the X-ray station (such as the conveyor belt system described above), the speed of data acquisition is limited by the time required for each fragment to soak into its protein crystal. Secondly, in applications where crystals are combined with fragments directly on data acquisition media (including both of the ADE methods described above), the maximum time that fragments have to soak into crystals is limited by evaporative dehydration of the protein crystals during the fragment soak. Here we demonstrate that both of these problems can be minimized by using small crystals, because the soak time required for a fragment hit to attain high occupancy depends approximately linearly on crystal size.

Metabolomic spectral libraries for data-independent SWATH liquid chromatography mass spectrometry acquisition.

PubMed

Bruderer, Tobias; Varesio, Emmanuel; Hidasi, Anita O; Duchoslav, Eva; Burton, Lyle; Bonner, Ron; Hopfgartner, Gérard

2018-03-01

High-quality mass spectral libraries have become crucial in mass spectrometry-based metabolomics. Here, we investigate a workflow to generate accurate mass discrete and composite spectral libraries for metabolite identification and for SWATH mass spectrometry data processing. Discrete collision energy (5-100 eV) accurate mass spectra were collected for 532 metabolites from the human metabolome database (HMDB) by flow injection analysis and compiled into composite spectra over a large collision energy range (e.g., 10-70 eV). Full scan response factors were also calculated. Software tools based on accurate mass and predictive fragmentation were specially developed and found to be essential for construction and quality control of the spectral library. First, elemental compositions constrained by the elemental composition of the precursor ion were calculated for all fragments. Secondly, all possible fragments were generated from the compound structure and were filtered based on their elemental compositions. From the discrete spectra, it was possible to analyze the specific fragment form at each collision energy and it was found that a relatively large collision energy range (10-70 eV) gives informative MS/MS spectra for library searches. From the composite spectra, it was possible to characterize specific neutral losses as radical losses using in silico fragmentation. Radical losses (generating radical cations) were found to be more prominent than expected. From 532 metabolites, 489 provided a signal in positive mode [M+H] + and 483 in negative mode [M-H] - . MS/MS spectra were obtained for 399 compounds in positive mode and for 462 in negative mode; 329 metabolites generated suitable spectra in both modes. Using the spectral library, LC retention time, response factors to analyze data-independent LC-SWATH-MS data allowed the identification of 39 (positive mode) and 72 (negative mode) metabolites in a plasma pool sample (total 92 metabolites) where 81 previously

The Liege-balloon program. [balloon-borne instruments for high-spectral resolution observations of the sun

NASA Technical Reports Server (NTRS)

Zander, R.

1974-01-01

The Liege-balloon program is intended to make high-spectral resolution observations of the sun in the near- and intermediate infrared regions not accessible from the ground. A description of the equipment, followed by a summary of the data obtained till now is presented. Except for ozone whose maximum of concentration lies near 25 Km altitude, the residual mass distribution of the other mentioned molecules decreases with altitude. This is a self-explanatory argument for carrying out spectroscopic observations from platforms transcending the densest layers of the earth's atmosphere. The Liege balloon equipment is primarily intended for very high-resolution solar observations from about 27-30 Km altitude, in all spectral regions between 1.5 and 15.0 microns, not accessible from the ground.

Far-infrared Spectral Radiance Observations and Modeling of Arctic Cirrus: Preliminary Results From RHUBC

NASA Astrophysics Data System (ADS)

Humpage, Neil; Green, Paul D.; Harries, John E.

2009-03-01

Recent studies have highlighted the important contribution of the far-infrared (electromagnetic radiation with wavelengths greater than 12 μm) to the Earth's radiative energy budget. In a cloud-free atmosphere, a significant fraction of the Earth's cooling to space from the mid- and upper troposphere takes place via the water vapor pure rotational band between 17 and 33 μm. Cirrus clouds also play an important role in the Earth's outgoing longwave radiation. The effect of cirrus on far-infrared radiation is of particular interest, since the refractive index of ice depends strongly on wavelength in this spectral region. The scattering properties of ice crystals are directly related to the refractive index, so consequently the spectral signature of cirrus measured in the FIR is sensitive to the cloud microphysical properties [1, 2]. By examining radiances measured at wavelengths between the strong water vapor absorption lines in the FIR, the understanding of the relationship between cirrus microphysics and the radiative transfer of thermal energy through cirrus may be improved. Until recently, very few observations of FIR spectral radiances had been made. The Tropospheric Airborne Fourier Transform Spectrometer (TAFTS) was developed by Imperial College to address this lack of observational data. TAFTS observes both zenith and nadir radiances at 0.1 cm-1 resolution, between 80 and 600 cm-1. During February and March 2007, TAFTS was involved in RHUBC (the Radiative Heating in Under-explored Bands Campaign), an ARM funded field campaign based at the ACRF-North Slope of Alaska site near Barrow, situated at 71° latitude. Infrared zenith spectral observations were taken by both TAFTS and the AERI-ER (spectral range 400-3300 cm-1) from the ground during both cloud-free and cirrus conditions. A wide range of other instrumentation was also available at the site, including a micropulse lidar, 35 GHz radar and the University of Colorado/NOAA Ground-based Scanning Radiometer

A falsely fat curvaton with an observable running of the spectral tilt

DOE Office of Scientific and Technical Information (OSTI.GOV)

Peloso, Marco; Sorbo, Lorenzo; Tasinato, Gianmassimo, E-mail: peloso@physics.umn.edu, E-mail: sorbo@physics.umass.edu, E-mail: gianmassimo.tasinato@port.ac.uk

2014-06-01

In slow roll inflation, the running of the spectral tilt is generically proportional to the square of the deviation from scale invariance, α{sub s}∝(n{sub s}−1){sup 2}, and is therefore currently undetectable. We present a mechanism able to generate a much larger running within slow roll. The mechanism is based on a curvaton field with a large mass term, and a time evolving normalization. This may happen for instance to the angular direction of a complex field in presence of an evolving radial direction. At the price of a single tuning between the mass term and the rate of change ofmore » the normalization, the curvaton can be made effectively light at the CMB scales, giving a spectral tilt in agreement with observations. The lightness is not preserved at later times, resulting in a detectable running of the spectral tilt. This mechanism shows that fields with a large mass term do not necessarily decouple from the inflationary physics, and provides a new tool for model building in inflation.« less

TWO-STAGE FRAGMENTATION FOR CLUSTER FORMATION: ANALYTICAL MODEL AND OBSERVATIONAL CONSIDERATIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bailey, Nicole D.; Basu, Shantanu, E-mail: nwityk@uwo.ca, E-mail: basu@uwo.ca

2012-12-10

Linear analysis of the formation of protostellar cores in planar magnetic interstellar clouds shows that molecular clouds exhibit a preferred length scale for collapse that depends on the mass-to-flux ratio and neutral-ion collision time within the cloud. We extend this linear analysis to the context of clustered star formation. By combining the results of the linear analysis with a realistic ionization profile for the cloud, we find that a molecular cloud may evolve through two fragmentation events in the evolution toward the formation of stars. Our model suggests that the initial fragmentation into clumps occurs for a transcritical cloud onmore » parsec scales while the second fragmentation can occur for transcritical and supercritical cores on subparsec scales. Comparison of our results with several star-forming regions (Perseus, Taurus, Pipe Nebula) shows support for a two-stage fragmentation model.« less

Multi-spectral optical scanners for commercial earth observation missions

NASA Astrophysics Data System (ADS)

Schröter, Karin; Engel, Wolfgang; Berndt, Klaus

2017-11-01

In recent years, a number of commercial Earth observation missions have been initiated with the aim to gather data in the visible and near-infrared wavelength range. Some of these missions aim at medium resolution (5 to 10 m) multi-spectral imaging with the special background of daily revisiting. Typical applications aim at monitoring of farming area for growth control and harvest prediction, irrigation control, or disaster monitoring such as hail damage in farming, or flood survey. In order to arrive at profitable business plans for such missions, it is mandatory to establish the space segment, i.e. the spacecraft with their opto -electronic payloads, at minimum cost while guaranteeing maximum reliability for mission success. As multiple spacecraft are required for daily revisiting, the solutions are typically based on micro-satellites. This paper presents designs for multi-spectral opto-electric scanners for this type of missions. These designs are drive n by minimum mass and power budgets of microsatellites, and the need for minimum cost. As a consequence, it is mandatory to arrive at thermally robust, compact telescope designs. The paper gives a comparison between refractive, catadioptric, and TMA optics. For mirror designs, aluminium and Zerodur mirror technologies are briefly discussed. State-of-the art focal plane designs are presented. The paper also addresses the choice of detector technologies such as CCDs and CMOS Active Pixel Sensors. The electronics of the multi-spectral scanners represent the main design driver regarding power consumption, reliability, and (most often) cost. It can be subdivided into the detector drive electronics, analog and digital data processing chains, the data mass memory unit, formatting and down - linking units, payload control electronics, and local power supply. The paper gives overviews and trade-offs between data compression strategies and electronics solutions, mass memory unit designs, and data formatting approaches

Structures of endothiapepsin-fragment complexes from crystallographic fragment screening using a novel, diverse and affordable 96-compound fragment library.

PubMed

Huschmann, Franziska U; Linnik, Janina; Sparta, Karine; Ühlein, Monika; Wang, Xiaojie; Metz, Alexander; Schiebel, Johannes; Heine, Andreas; Klebe, Gerhard; Weiss, Manfred S; Mueller, Uwe

2016-05-01

Crystallographic screening of the binding of small organic compounds (termed fragments) to proteins is increasingly important for medicinal chemistry-oriented drug discovery. To enable such experiments in a widespread manner, an affordable 96-compound library has been assembled for fragment screening in both academia and industry. The library is selected from already existing protein-ligand structures and is characterized by a broad ligand diversity, including buffer ingredients, carbohydrates, nucleotides, amino acids, peptide-like fragments and various drug-like organic compounds. When applied to the model protease endothiapepsin in a crystallographic screening experiment, a hit rate of nearly 10% was obtained. In comparison to other fragment libraries and considering that no pre-screening was performed, this hit rate is remarkably high. This demonstrates the general suitability of the selected compounds for an initial fragment-screening campaign. The library composition, experimental considerations and time requirements for a complete crystallographic fragment-screening campaign are discussed as well as the nine fully refined obtained endothiapepsin-fragment structures. While most of the fragments bind close to the catalytic centre of endothiapepsin in poses that have been observed previously, two fragments address new sites on the protein surface. ITC measurements show that the fragments bind to endothiapepsin with millimolar affinity.

Structures of endothiapepsin–fragment complexes from crystallographic fragment screening using a novel, diverse and affordable 96-compound fragment library

PubMed Central

Huschmann, Franziska U.; Linnik, Janina; Sparta, Karine; Ühlein, Monika; Wang, Xiaojie; Metz, Alexander; Schiebel, Johannes; Heine, Andreas; Klebe, Gerhard; Weiss, Manfred S.; Mueller, Uwe

2016-01-01

Crystallographic screening of the binding of small organic compounds (termed fragments) to proteins is increasingly important for medicinal chemistry-oriented drug discovery. To enable such experiments in a widespread manner, an affordable 96-compound library has been assembled for fragment screening in both academia and industry. The library is selected from already existing protein–ligand structures and is characterized by a broad ligand diversity, including buffer ingredients, carbohydrates, nucleotides, amino acids, peptide-like fragments and various drug-like organic compounds. When applied to the model protease endothiapepsin in a crystallographic screening experiment, a hit rate of nearly 10% was obtained. In comparison to other fragment libraries and considering that no pre-screening was performed, this hit rate is remarkably high. This demonstrates the general suitability of the selected compounds for an initial fragment-screening campaign. The library composition, experimental considerations and time requirements for a complete crystallographic fragment-screening campaign are discussed as well as the nine fully refined obtained endothiapepsin–fragment structures. While most of the fragments bind close to the catalytic centre of endothiapepsin in poses that have been observed previously, two fragments address new sites on the protein surface. ITC measurements show that the fragments bind to endothiapepsin with millimolar affinity. PMID:27139825

Estimating the Grain Size Distribution of Mars based on Fragmentation Theory and Observations

NASA Astrophysics Data System (ADS)

Charalambous, C.; Pike, W. T.; Golombek, M.

2017-12-01

We present here a fundamental extension to the fragmentation theory [1] which yields estimates of the distribution of particle sizes of a planetary surface. The model is valid within the size regimes of surfaces whose genesis is best reflected by the evolution of fragmentation phenomena governed by either the process of meteoritic impacts, or by a mixture with aeolian transportation at the smaller sizes. The key parameter of the model, the regolith maturity index, can be estimated as an average of that observed at a local site using cratering size-frequency measurements, orbital and surface image-detected rock counts and observations of sub-mm particles at landing sites. Through validation of ground truth from previous landed missions, the basis of this approach has been used at the InSight landing ellipse on Mars to extrapolate rock size distributions in HiRISE images down to 5 cm rock size, both to determine the landing safety risk and the subsequent probability of obstruction by a rock of the deployed heat flow mole down to 3-5 m depth [2]. Here we focus on a continuous extrapolation down to 600 µm coarse sand particles, the upper size limit that may be present through aeolian processes [3]. The parameters of the model are first derived for the fragmentation process that has produced the observable rocks via meteorite impacts over time, and therefore extrapolation into a size regime that is affected by aeolian processes has limited justification without further refinement. Incorporating thermal inertia estimates, size distributions observed by the Spirit and Opportunity Microscopic Imager [4] and Atomic Force and Optical Microscopy from the Phoenix Lander [5], the model's parameters in combination with synthesis methods are quantitatively refined further to allow transition within the aeolian transportation size regime. In addition, due to the nature of the model emerging in fractional mass abundance, the percentage of material by volume or mass that resides

A decade of Rossi X-ray Timing Explorer Seyfert observations: An RXTE Seyfert spectral database

NASA Astrophysics Data System (ADS)

Mattson, Barbara Jo

2008-10-01

With over forty years of X-ray observations, we should have a grasp on the X- ray nature of active galactic nuclei (AGN). The unification model of Antonucci and Miller (1985) offered a context for understanding observations by defining a "typical" AGN geometry, with observed spectral differences explained by line- of-sight effects. However, the emerging picture is that the central AGN is more complex than unification alone can describe. We explore the unified model with a systematic X-ray spectral study of bright Seyfert galaxies observed by the Rossi X-Ray Timing Explorer (RXTE) over its first 10 years. We develop a spectral-fit database of 821 time-resolved spectra from 39 Seyfert galaxies fitted to a model describing the effects of an X-ray power-law spectrum reprocessed and absorbed by material in the central AGN region. We observe a relationship between radio and X-ray properties for Seyfert 1s, with the spectral parameters differing between radio-loud and radio-quiet Seyfert 1s. We also find a complex relationship between the Fe K equivalent width ( EW ) and the power-law photon index (Gamma) for the Seyfert 1s, with a correlation for the radio-loud sources and an anti-correlation for the radio- quiet sources. These results can be explained if X-rays from the relativistic jet in radio-loud sources contribute significantly to the observed spectrum. We observe scatter in the EW-Gamma relationship for the Seyfert 2s, suggesting complex environments that unification alone cannot explain. We see a strong correlation between Gamma and the reflection fraction ( R ) in the Seyfert 1 and 2 samples, but modeling degeneracies are present, so this relationship cannot be trusted as instructive of the AGN physics. For the Seyfert 1 sample, we find an anticorrelation between EW and the 2 to 10 keV luminosity ( L x ), also known as the X-ray Baldwin effect. This may suggest that higher luminosity sources contain less material or may be due to a time-lag effect. We do not

Computational analyses of spectral trees from electrospray multi-stage mass spectrometry to aid metabolite identification.

PubMed

Cao, Mingshu; Fraser, Karl; Rasmussen, Susanne

2013-10-31

Mass spectrometry coupled with chromatography has become the major technical platform in metabolomics. Aided by peak detection algorithms, the detected signals are characterized by mass-over-charge ratio (m/z) and retention time. Chemical identities often remain elusive for the majority of the signals. Multi-stage mass spectrometry based on electrospray ionization (ESI) allows collision-induced dissociation (CID) fragmentation of selected precursor ions. These fragment ions can assist in structural inference for metabolites of low molecular weight. Computational investigations of fragmentation spectra have increasingly received attention in metabolomics and various public databases house such data. We have developed an R package "iontree" that can capture, store and analyze MS2 and MS3 mass spectral data from high throughput metabolomics experiments. The package includes functions for ion tree construction, an algorithm (distMS2) for MS2 spectral comparison, and tools for building platform-independent ion tree (MS2/MS3) libraries. We have demonstrated the utilization of the package for the systematic analysis and annotation of fragmentation spectra collected in various metabolomics platforms, including direct infusion mass spectrometry, and liquid chromatography coupled with either low resolution or high resolution mass spectrometry. Assisted by the developed computational tools, we have demonstrated that spectral trees can provide informative evidence complementary to retention time and accurate mass to aid with annotating unknown peaks. These experimental spectral trees once subjected to a quality control process, can be used for querying public MS2 databases or de novo interpretation. The putatively annotated spectral trees can be readily incorporated into reference libraries for routine identification of metabolites.

Solid-state NMR spectroscopy of 18.5 kDa myelin basic protein reconstituted with lipid vesicles: spectroscopic characterisation and spectral assignments of solvent-exposed protein fragments.

PubMed

Zhong, Ligang; Bamm, Vladimir V; Ahmed, Mumdooh A M; Harauz, George; Ladizhansky, Vladimir

2007-12-01

Myelin basic protein (MBP, 18.5 kDa isoform) is a peripheral membrane protein that is essential for maintaining the structural integrity of the multilamellar myelin sheath of the central nervous system. Reconstitution of the most abundant 18.5 kDa MBP isoform with lipid vesicles yields an aggregated assembly mimicking the protein's natural environment, but which is not amenable to standard solution NMR spectroscopy. On the other hand, the mobility of MBP in such a system is variable, depends on the local strength of the protein-lipid interaction, and in general is of such a time scale that the dipolar interactions are averaged out. Here, we used a combination of solution and solid-state NMR (ssNMR) approaches: J-coupling-driven polarization transfers were combined with magic angle spinning and high-power decoupling to yield high-resolution spectra of the mobile fragments of 18.5 kDa murine MBP in membrane-associated form. To partially circumvent the problem of short transverse relaxation, we implemented three-dimensional constant-time correlation experiments (NCOCX, NCACX, CONCACX, and CAN(CO)CX) that were able to provide interresidue and intraresidue backbone correlations. These experiments resulted in partial spectral assignments for mobile fragments of the protein. Additional nuclear Overhauser effect spectroscopy (NOESY)-based experiments revealed that the mobile fragments were exposed to solvent and were likely located outside the lipid bilayer, or in its hydrophilic portion. Chemical shift index analysis showed that the fragments were largely disordered under these conditions. These combined approaches are applicable to ssNMR investigations of other peripheral membrane proteins reconstituted with lipids.

Mass spectrometry for fragment screening.

PubMed

Chan, Daniel Shiu-Hin; Whitehouse, Andrew J; Coyne, Anthony G; Abell, Chris

2017-11-08

Fragment-based approaches in chemical biology and drug discovery have been widely adopted worldwide in both academia and industry. Fragment hits tend to interact weakly with their targets, necessitating the use of sensitive biophysical techniques to detect their binding. Common fragment screening techniques include differential scanning fluorimetry (DSF) and ligand-observed NMR. Validation and characterization of hits is usually performed using a combination of protein-observed NMR, isothermal titration calorimetry (ITC) and X-ray crystallography. In this context, MS is a relatively underutilized technique in fragment screening for drug discovery. MS-based techniques have the advantage of high sensitivity, low sample consumption and being label-free. This review highlights recent examples of the emerging use of MS-based techniques in fragment screening. © 2017 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.

Improvements to an earth observing statistical performance model with applications to LWIR spectral variability

NASA Astrophysics Data System (ADS)

Zhao, Runchen; Ientilucci, Emmett J.

2017-05-01

Hyperspectral remote sensing systems provide spectral data composed of hundreds of narrow spectral bands. Spectral remote sensing systems can be used to identify targets, for example, without physical interaction. Often it is of interested to characterize the spectral variability of targets or objects. The purpose of this paper is to identify and characterize the LWIR spectral variability of targets based on an improved earth observing statistical performance model, known as the Forecasting and Analysis of Spectroradiometric System Performance (FASSP) model. FASSP contains three basic modules including a scene model, sensor model and a processing model. Instead of using mean surface reflectance only as input to the model, FASSP transfers user defined statistical characteristics of a scene through the image chain (i.e., from source to sensor). The radiative transfer model, MODTRAN, is used to simulate the radiative transfer based on user defined atmospheric parameters. To retrieve class emissivity and temperature statistics, or temperature / emissivity separation (TES), a LWIR atmospheric compensation method is necessary. The FASSP model has a method to transform statistics in the visible (ie., ELM) but currently does not have LWIR TES algorithm in place. This paper addresses the implementation of such a TES algorithm and its associated transformation of statistics.

Spectral irradiance variations: comparison between observations and the SATIRE model on solar rotation time scales

NASA Astrophysics Data System (ADS)

Unruh, Y. C.; Krivova, N. A.; Solanki, S. K.; Harder, J. W.; Kopp, G.

2008-07-01

Aims: We test the reliability of the observed and calculated spectral irradiance variations between 200 and 1600 nm over a time span of three solar rotations in 2004. Methods: We compare our model calculations to spectral irradiance observations taken with SORCE/SIM, SoHO/VIRGO, and UARS/SUSIM. The calculations assume LTE and are based on the SATIRE (Spectral And Total Irradiance REconstruction) model. We analyse the variability as a function of wavelength and present time series in a number of selected wavelength regions covering the UV to the NIR. We also show the facular and spot contributions to the total calculated variability. Results: In most wavelength regions, the variability agrees well between all sets of observations and the model calculations. The model does particularly well between 400 and 1300 nm, but fails below 220 nm, as well as for some of the strong NUV lines. Our calculations clearly show the shift from faculae-dominated variability in the NUV to spot-dominated variability above approximately 400 nm. We also discuss some of the remaining problems, such as the low sensitivity of SUSIM and SORCE for wavelengths between approximately 310 and 350 nm, where currently the model calculations still provide the best estimates of solar variability.

Libraries of Peptide Fragmentation Mass Spectra Database

National Institute of Standards and Technology Data Gateway

SRD 1C NIST Libraries of Peptide Fragmentation Mass Spectra Database (Web, free access)   The purpose of the library is to provide peptide reference data for laboratories employing mass spectrometry-based proteomics methods for protein analysis. Mass spectral libraries identify these compounds in a more sensitive and robust manner than alternative methods. These databases are freely available for testing and development of new applications.

[Building Mass Spectrometry Spectral Libraries of Human Cancer Cell Lines].

PubMed

Faktor, J; Bouchal, P

Cancer research often focuses on protein quantification in model cancer cell lines and cancer tissues. SWATH (sequential windowed acquisition of all theoretical fragment ion spectra), the state of the art method, enables the quantification of all proteins included in spectral library. Spectral library contains fragmentation patterns of each detectable protein in a sample. Thorough spectral library preparation will improve quantitation of low abundant proteins which usually play an important role in cancer. Our research is focused on the optimization of spectral library preparation aimed at maximizing the number of identified proteins in MCF-7 breast cancer cell line. First, we optimized the sample preparation prior entering the mass spectrometer. We examined the effects of lysis buffer composition, peptide dissolution protocol and the material of sample vial on the number of proteins identified in spectral library. Next, we optimized mass spectrometry (MS) method for spectral library data acquisition. Our thorough optimized protocol for spectral library building enabled the identification of 1,653 proteins (FDR < 1%) in 1 µg of MCF-7 lysate. This work contributed to the enhancement of protein coverage in SWATH digital biobanks which enable quantification of arbitrary protein from physically unavailable samples. In future, high quality spectral libraries could play a key role in preparing of patient proteome digital fingerprints.Key words: biomarker - mass spectrometry - proteomics - digital biobanking - SWATH - protein quantificationThis work was supported by the project MEYS - NPS I - LO1413.The authors declare they have no potential conflicts of interest concerning drugs, products, or services used in the study.The Editorial Board declares that the manuscript met the ICMJE recommendation for biomedical papers.Submitted: 7. 5. 2016Accepted: 9. 6. 2016.

Spectrum-to-Spectrum Searching Using a Proteome-wide Spectral Library*

PubMed Central

Yen, Chia-Yu; Houel, Stephane; Ahn, Natalie G.; Old, William M.

2011-01-01

The unambiguous assignment of tandem mass spectra (MS/MS) to peptide sequences remains a key unsolved problem in proteomics. Spectral library search strategies have emerged as a promising alternative for peptide identification, in which MS/MS spectra are directly compared against a reference library of confidently assigned spectra. Two problems relate to library size. First, reference spectral libraries are limited to rediscovery of previously identified peptides and are not applicable to new peptides, because of their incomplete coverage of the human proteome. Second, problems arise when searching a spectral library the size of the entire human proteome. We observed that traditional dot product scoring methods do not scale well with spectral library size, showing reduction in sensitivity when library size is increased. We show that this problem can be addressed by optimizing scoring metrics for spectrum-to-spectrum searches with large spectral libraries. MS/MS spectra for the 1.3 million predicted tryptic peptides in the human proteome are simulated using a kinetic fragmentation model (MassAnalyzer version2.1) to create a proteome-wide simulated spectral library. Searches of the simulated library increase MS/MS assignments by 24% compared with Mascot, when using probabilistic and rank based scoring methods. The proteome-wide coverage of the simulated library leads to 11% increase in unique peptide assignments, compared with parallel searches of a reference spectral library. Further improvement is attained when reference spectra and simulated spectra are combined into a hybrid spectral library, yielding 52% increased MS/MS assignments compared with Mascot searches. Our study demonstrates the advantages of using probabilistic and rank based scores to improve performance of spectrum-to-spectrum search strategies. PMID:21532008

Simultaneous Spectral and Timing Observations of Accreting Neuron Stars

NASA Technical Reports Server (NTRS)

Kaaret, P.; West, Donald K. (Technical Monitor)

2001-01-01

The goal of this proposal was to perform simultaneous x-ray spectral and millisecond timing observations of accreting neutron stars to further our understanding of their accretion dynamics and in the hope of using these systems as probes of the physics of strong gravitational fields. Observations of the neutron star binaries 4U0614+091, 4U1728-34, 4U1820-30, and Cyg X-2 were carried out with RXTE and BeppoSAX, ASCA, and Chandra (not all simultaneously). In addition, archival data were analyzed for 4U0614+091 and 4U1820-30. This investigation led to publication of three papers in peer-reviewed journals. These are listed below. In addition, the results were presented at several meetings including the two poster presentations listed below. Dr. Santina Piraino visited SAO for 4 months during 2000 to collaborate on analysis of the data from NAG5-8408 and NAG5-9104.

Spectral Longwave Cloud Radiative Forcing as Observed by AIRS

NASA Technical Reports Server (NTRS)

Blaisdell, John M.; Susskind, Joel; Lee, Jae N.; Iredell, Lena

2016-01-01

AIRS V6 products contain the spectral contributions to Outgoing Longwave Radiation (OLR), clear-sky OLR (OLR(sub CLR)), and Longwave Cloud Radiative Forcing (LWCRF) in 16 bands from 100 cm(exp -1) to 3260 cm(exp -1). We show climatologies of selected spectrally resolved AIRS V6 products over the period of September 2002 through August 2016. Spectrally resolved LWCRF can better describe the response of the Earth system to cloud and cloud feedback processes. The spectral LWCRF enables us to estimate the fraction of each contributing factor to cloud forcing, i.e.: surface temperature, mid to upper tropospheric water vapor, and tropospheric temperature. This presentation also compares the spatial characteristics of LWCRF from AIRS, CERES_EBAF Edition-2.8, and MERRA-2. AIRS and CERES LWCRF products show good agreement. The OLR bias between AIRS and CERES is very close to that of OLR(sub CLR). This implies that both AIRS and CERES OLR products accurately account for the effect of clouds on OLR.

Effect of gamma-irradiation on thermal decomposition kinetics, X-ray diffraction pattern and spectral properties of tris(1,2-diaminoethane)nickel(II)sulphate

NASA Astrophysics Data System (ADS)

Jayashri, T. A.; Krishnan, G.; Rema Rani, N.

2014-12-01

Tris(1,2-diaminoethane)nickel(II)sulphate was prepared, and characterised by various chemical and spectral techniques. The sample was irradiated with 60Co gamma rays for varying doses. Sulphite ion and ammonia were detected and estimated in the irradiated samples. Non-isothermal decomposition kinetics, X-ray diffraction pattern, Fourier transform infrared spectroscopy, electronic, fast atom bombardment mass spectra, and surface morphology of the complex were studied before and after irradiation. Kinetic parameters were evaluated by integral, differential, and approximation methods. Irradiation enhanced thermal decomposition, lowering thermal and kinetic parameters. The mechanism of decomposition is controlled by R3 function. From X-ray diffraction studies, change in lattice parameters and subsequent changes in unit cell volume and average crystallite size were observed. Both unirradiated and irradiated samples of the complex belong to trigonal crystal system. Decrease in the intensity of the peaks was observed in the infrared spectra of irradiated samples. Electronic spectral studies revealed that the M-L interaction is unaffected by irradiation. Mass spectral studies showed that the fragmentation patterns of the unirradiated and irradiated samples are similar. The additional fragment with m/z 256 found in the irradiated sample is attributed to S8+. Surface morphology of the complex changed upon irradiation.

Customized Consensus Spectral Library Building for Untargeted Quantitative Metabolomics Analysis with Data Independent Acquisition Mass Spectrometry and MetaboDIA Workflow.

PubMed

Chen, Gengbo; Walmsley, Scott; Cheung, Gemmy C M; Chen, Liyan; Cheng, Ching-Yu; Beuerman, Roger W; Wong, Tien Yin; Zhou, Lei; Choi, Hyungwon

2017-05-02

Data independent acquisition-mass spectrometry (DIA-MS) coupled with liquid chromatography is a promising approach for rapid, automatic sampling of MS/MS data in untargeted metabolomics. However, wide isolation windows in DIA-MS generate MS/MS spectra containing a mixed population of fragment ions together with their precursor ions. This precursor-fragment ion map in a comprehensive MS/MS spectral library is crucial for relative quantification of fragment ions uniquely representative of each precursor ion. However, existing reference libraries are not sufficient for this purpose since the fragmentation patterns of small molecules can vary in different instrument setups. Here we developed a bioinformatics workflow called MetaboDIA to build customized MS/MS spectral libraries using a user's own data dependent acquisition (DDA) data and to perform MS/MS-based quantification with DIA data, thus complementing conventional MS1-based quantification. MetaboDIA also allows users to build a spectral library directly from DIA data in studies of a large sample size. Using a marine algae data set, we show that quantification of fragment ions extracted with a customized MS/MS library can provide as reliable quantitative data as the direct quantification of precursor ions based on MS1 data. To test its applicability in complex samples, we applied MetaboDIA to a clinical serum metabolomics data set, where we built a DDA-based spectral library containing consensus spectra for 1829 compounds. We performed fragment ion quantification using DIA data using this library, yielding sensitive differential expression analysis.

Ion Spectral Structures Observed by the Van Allen Probes and Cluster

NASA Astrophysics Data System (ADS)

Ferradas, C.; Zhang, J.; Luo, H.; Kistler, L. M.; Spence, H. E.; Larsen, B.; Skoug, R. M.; Funsten, H. O.; Reeves, G. D.

2014-12-01

During the last decades several missions have recorded the presence of dynamic spectral features of energetic ions in the inner magnetosphere. Previous studies have revealed single "nose-like" structures occurring alone and simultaneous nose-like structures (up to three). In this study we also include signatures of new types of ion structure, namely "trunk-like" and "tusk-like" structures. All the ion structures are named after the characteristic shapes of energy bands or gaps in the energy-time spectrograms of in situ measured ion fluxes. They constitute the observational signatures of ion acceleration, transport, and loss in the global magnetosphere. Multi-spacecraft analysis of these structures is important to understand their spatial distribution and temporal evolution. Mass spectrometers onboard Cluster (in a polar orbit) and the Van Allen Probes (in an equatorial orbit) measure energetic hydrogen, helium, and oxygen ions near the inner edge of the plasma sheet, where these ion structures are observed. We present a statistical study of the ion structures, using >1-year measurements from the two missions during the Van Allen Probes era. The results provide important details about the spatial distribution (dependence on geocentric distance and magnetic local time), spectral features of the structures (e.g., characteristic energy and differences among species), and geomagnetic and solar wind conditions under which these structures occur.

High spectral resolution observations of fluorescent molecular hydrogen in molecular clouds

NASA Technical Reports Server (NTRS)

Burton, Michael G.; Geballe, T. R.; Brand, P. W. J. L.; Moorhouse, A.

1990-01-01

The 1-0 S(1) line of molecular hydrogen has been observed at high spectral resolution in several sources where the emission was suspected of being fluorescent. In NGC 2023, the Orion Bar, and Parsamyan 18, the S(1) line is unresolved, and the line center close to the rest velocity of the ambient molecular cloud. Such behavior is expected for UV-excited line emission. The H2 line widths in molecular clouds thus can serve as diagnostic for shocked and UV-excitation mechanisms. If the lines are broader than several km/s or velocity shifts are observed across a source it is likely that shocks are responsible for the excitation of the gas.

Using In Silico Fragmentation to Improve Routine Residue Screening in Complex Matrices.

PubMed

Kaufmann, Anton; Butcher, Patrick; Maden, Kathryn; Walker, Stephan; Widmer, Mirjam

2017-12-01

Targeted residue screening requires the use of reference substances in order to identify potential residues. This becomes a difficult issue when using multi-residue methods capable of analyzing several hundreds of analytes. Therefore, the capability of in silico fragmentation based on a structure database ("suspect screening") instead of physical reference substances for routine targeted residue screening was investigated. The detection of fragment ions that can be predicted or explained by in silico software was utilized to reduce the number of false positives. These "proof of principle" experiments were done with a tool that is integrated into a commercial MS vendor instrument operating software (UNIFI) as well as with a platform-independent MS tool (Mass Frontier). A total of 97 analytes belonging to different chemical families were separated by reversed phase liquid chromatography and detected in a data-independent acquisition (DIA) mode using ion mobility hyphenated with quadrupole time of flight mass spectrometry. The instrument was operated in the MS E mode with alternating low and high energy traces. The fragments observed from product ion spectra were investigated using a "chopping" bond disconnection algorithm and a rule-based algorithm. The bond disconnection algorithm clearly explained more analyte product ions and a greater percentage of the spectral abundance than the rule-based software (92 out of the 97 compounds produced ≥1 explainable fragment ions). On the other hand, tests with a complex blank matrix (bovine liver extract) indicated that the chopping algorithm reports significantly more false positive fragments than the rule based software. Graphical Abstract.

Using In Silico Fragmentation to Improve Routine Residue Screening in Complex Matrices

NASA Astrophysics Data System (ADS)

Kaufmann, Anton; Butcher, Patrick; Maden, Kathryn; Walker, Stephan; Widmer, Mirjam

2017-12-01

Targeted residue screening requires the use of reference substances in order to identify potential residues. This becomes a difficult issue when using multi-residue methods capable of analyzing several hundreds of analytes. Therefore, the capability of in silico fragmentation based on a structure database ("suspect screening") instead of physical reference substances for routine targeted residue screening was investigated. The detection of fragment ions that can be predicted or explained by in silico software was utilized to reduce the number of false positives. These "proof of principle" experiments were done with a tool that is integrated into a commercial MS vendor instrument operating software (UNIFI) as well as with a platform-independent MS tool (Mass Frontier). A total of 97 analytes belonging to different chemical families were separated by reversed phase liquid chromatography and detected in a data-independent acquisition (DIA) mode using ion mobility hyphenated with quadrupole time of flight mass spectrometry. The instrument was operated in the MSE mode with alternating low and high energy traces. The fragments observed from product ion spectra were investigated using a "chopping" bond disconnection algorithm and a rule-based algorithm. The bond disconnection algorithm clearly explained more analyte product ions and a greater percentage of the spectral abundance than the rule-based software (92 out of the 97 compounds produced ≥1 explainable fragment ions). On the other hand, tests with a complex blank matrix (bovine liver extract) indicated that the chopping algorithm reports significantly more false positive fragments than the rule based software. [Figure not available: see fulltext.

New Ground-based Spectral Observations of Mercury and Comparison with the Moon

NASA Technical Reports Server (NTRS)

Blewett, D. T.; Warell, J.

2003-01-01

Spectroscopic observations (400-670 nm) of Mercury were made at La Palma with the Nordic Optical Telescope (NOT) in June and July of 2002. Extensive observations of solar analog standard stars and validation spectra of 7 Iris and a variety of locations on the Moon were also collected. The 2002 Mercury data were also combined with previous observations (520-970 nm) from the Swedish Solar Vacuum Telescope (SVST). A spectrum (400-970 nm) calibrated to standard bidirectional geometry (alpha=i=30deg, e=0deg) was constructed based on the spectral slopes from 2002. The combined spectrum permits analysis with the Lucey lunar abundance relations for FeO and TiO2.

How to fragment peralkaline rhyolites: Observations on pumice using combined multi-scale 2D and 3D imaging

NASA Astrophysics Data System (ADS)

Hughes, Ery C.; Neave, David A.; Dobson, Katherine J.; Withers, Philip J.; Edmonds, Marie

2017-04-01

Peralkaline rhyolites are volatile-rich magmas that typically erupt in continental rift settings. The high alkali and halogen content of these magmas results in viscosities two to three orders of magnitude lower than in calc-alkaline rhyolites. Unless extensive microlite crystallisation occurs, the calculated strain rates required for fragmentation are unrealistically high, yet peralkaline pumices from explosive eruptions of varying scales are commonly microlite-free. Here we present a combined 2D scanning electron microscopy and 3D X-ray microtomography study of peralkaline rhyolite vesicle textures designed to investigate fragmentation processes. Microlite-free peralkaline pumice textures from Pantelleria, Italy, strongly resemble those from calc-alkaline rhyolites on both macro and micro scales. These textures imply that the pumices fragmented in a brittle fashion and that their peralkaline chemistry had little direct effect on textural evolution during bubble nucleation and growth. We suggest that the observed pumice textures evolved in response to high decompression rates and that peralkaline rhyolite magmas can fragment when strain localisation and high bubble overpressures develop during rapid ascent.

The spectral archive of cosmic X-ray sources observed by the Einstein Observatory Focal Plane Crystal Spectrometer

NASA Technical Reports Server (NTRS)

Lum, Kenneth S. K.; Canizares, Claude R.; Clark, George W.; Coyne, Joan M.; Markert, Thomas H.; Saez, Pablo J.; Schattenburg, Mark L.; Winkler, P. F.

1992-01-01

The Einstein Observatory Focal Plane Crystal Spectrometer (FPCS) used the technique of Bragg spectroscopy to study cosmic X-ray sources in the 0.2-3 keV energy range. The high spectral resolving power (E/Delta-E is approximately equal to 100-1000) of this instrument allowed it to resolve closely spaced lines and study the structure of individual features in the spectra of 41 cosmic X-ray sources. An archival summary of the results is presented as a concise record the FPCS observations and a source of information for future analysis by the general astrophysics community. For each observation, the instrument configuration, background rate, X-ray flux or upper limit within the energy band observed, and spectral histograms are given. Examples of the contributions the FPCS observations have made to the understanding of the objects observed are discussed.

Spectral Classification of NEOWISE Observed Near-Earth Asteroids

NASA Astrophysics Data System (ADS)

Desira, Christopher

2017-01-01

Near-Earth asteroids (NEAs) allow us to determine the properties of the smallest solar system bodies in the sub-kilometer size range. Large (>few km) NEAs have albedos which span a wide range from ~0.05 to ~0.3 and are known to correlate with asteroid composition, determined by analysing the shape of their optical reflectance spectra. It is, however, still unknown how this relationship extends into the sub-kilometer population.NEOWISE has performed a thermal infrared survey that provides the largest inventory to date of well-determined sizes and albedos for NEAs, including many in the sub-km population. This provides an opportunity to test the albedo-surface composition correlation in a new size regime. If it is found to hold, then a simple optical spectrum can give a well-constrained albedo and size estimate without the need for thermal IR measurements.The sizes and composition of many more sub-km sized NEAs are needed to aid in the understanding of the formation/evolution of the inner solar system and the characterisation of potentially hazardous objects, possible mission targets and even commercial mining operations.We obtained optical spectra of sub-kilometer NEOWISE-observed NEAs using the 1.5m Tillinghast telescope and the FAST spectrograph at the Whipple Observatory on Mt Hopkins, Arizona. We performed a taxonomic classification to identify their likely composition and combined this with NEOWISE data to look for known correlations between main belt asteroid spectral types and their optical albedos. Additionally, we tested the robustness of current data reduction methods in order to increase our confidence in the spectral classifications of NEAs.

Ground-based observations of the corona in the visible and NIR spectral ranges

NASA Technical Reports Server (NTRS)

Epple, Alexander; Schwenn, Rainer

1995-01-01

Since late 1993 we have been using a mirror coronagraph on Pic du Midi (PICO) to observe the solar emission corona in several spectral lines of (FE-X), (FE-XIII), and (FE-XIV). For good meteorological conditions the diffuse corona and coronal holes in between can be seen out to 1.2 solar mass for sun center. Active regions can be mapped to bond 1.5 solar mass in the green and infrared lines. Recent observations of PICO are presented.

Fragmentation study of iridoid glucosides through positive and negative electrospray ionization, collision-induced dissociation and tandem mass spectrometry.

PubMed

Es-Safi, Nour-Eddine; Kerhoas, Lucien; Ducrot, Paul-Henri

2007-01-01

Mass spectrometric methodology based on the combined use of positive and negative electrospray ionization, collision-induced dissociation (CID) and tandem mass spectrometry (MS/MS) has been applied to the mass spectral study of a series of six naturally occurring iridoids through in-source fragmentation of the protonated [M+H]+, deprotonated [M--H]- and sodiated [M+Na]+ ions. This led to the unambiguous determination of the molecular masses of the studied compounds and allowed CID spectra of the molecular ions to be obtained. Valuable structural information regarding the nature of both the glycoside and the aglycone moiety was thus obtained. Glycosidic cleavage and ring cleavages of both aglycone and sugar moieties were the major fragmentation pathways observed during CID, where the losses of small molecules, the cinnamoyl and the cinnamate parts were also observed. The formation of the ionized aglycones, sugars and their product ions was thus obtained giving information on their basic skeleton. The protonated, i.e. [M+H]+ and deprotonated [M--H]-, ions were found to fragment mainly by glycosidic cleavages. MS/MS spectra of the [M+Na]+ ions gave complementary information for the structural characterization of the studied compounds. Unlike the dissociation of protonated molecular ions, that of sodiated molecules also provided sodiated sugar fragments where the C0+ fragment corresponding to the glucose ion was obtained as base peak for all the studied compounds. Copyright (c) 2007 John Wiley & Sons, Ltd.

VLA observations of unidentified Leiden-Berkeley Deep-Survey sources - Luminosity and redshift dependence of spectral properties

NASA Technical Reports Server (NTRS)

Kapahi, Vijay K.; Kulkarni, Vasant K.

1990-01-01

VLA observations of a complete subset of the Leiden-Berkeley Deep Survey sources that have S(1.4 GHz) greater than 10 mJy and are not optically identified down to F=22 mag are reported. By comparing the spectral and structural properties of the sources with samples from the literature, an attempt was made to disentangle the luminosity and redshift dependence of the spectral indices of extended emission in radio galaxies and of the incidence of compact steep-spectrum sources. It is found that the fraction of compact sources among those with a steep spectrum is related primarily to redshift, being much larger at high redshifts for sources of similar radio luminosity. Only a weak and marginally significant dependence of spectral indices of the extended sources on luminosity and redshift is found in samples selected at 1.4 and 2.7 GHz. It is pointed out that the much stronger correlation of spectral indices with luminosity may be arising partly from spectral curvature, and partly due to the preferential inclusion of very steep-spectrum sources from high redshift in low-frequency surveys.

Spectral Invariance Principles Observed in Spectral Radiation Measurements of the Transition Zone

NASA Technical Reports Server (NTRS)

Marshak, Alexander

2011-01-01

The main theme for our research is the understanding and closure of the surface spectral shortwave radiation problem in fully 3D cloud situations by combining the new ARM scanning radars, shortwave spectrometers, and microwave radiometers with the arsenal of radiative transfer tools developed by our group. In particular, we define first a large number of cloudy test cases spanning all 3D possibilities not just the customary uniform-overcast ones. Second, for each case, we define a "Best Estimate of Clouds That Affect Shortwave Radiation" using all relevant ARM instruments, notably the new scanning radars, and contribute this to the ARM Archive. Third, we test the ASR-signature radiative transfer model RRTMG_SW for those cases, focusing on the near-IR because of long-standing problems in this spectral region, and work with the developers to improve RRTMG_SW in order to increase its penetration into the modeling community.

The continuum spectral characteristics of gamma ray bursts observed by BATSE

NASA Technical Reports Server (NTRS)

Pendleton, Geoffrey N.; Paciesas, William S.; Briggs, Michael S.; Mallozzi, Robert S.; Koshut, Tom M.; Fishman, Gerald J.; Meegan, Charles A.; Wilson, Robert B.; Harmon, Alan B.; Kouveliotou, Chryssa

1994-01-01

Distributions of the continuum spectral characteristics of 260 bursts in the first Burst and Transient Source Experiment (BATSE) catalog are presented. The data are derived from flux ratios calculated from the BATSE Large Area Detector (LAD) four channel discriminator data. The data are converted from counts to photons using a direct spectral inversion technique to remove the effects of atmospheric scattering and the energy dependence of the detector angular response. Although there are intriguing clusterings of bursts in the spectral hardness ratio distributions, no evidence for the presence of distinct burst classes based on spectral hardness ratios alone is found. All subsets of bursts selected for their spectral characteristics in this analysis exhibit spatial distributions consistent with isotropy. The spectral diversity of the burst population appears to be caused largely by the highly variable nature of the burst production mechanisms themselves.

The continuum spectral characteristics of gamma-ray bursts observed by BATSE

NASA Technical Reports Server (NTRS)

Pendleton, Geoffrey N.; Paciesas, William S.; Briggs, Michael S.; Mallozzi, Robert S.; Koshut, Tom M.; Fishman, Gerald J.; Meegan, Charles A.; Wilson, Robert B.; Harmon, Alan B.; Kouveliotou, Chryssa

1994-01-01

Distributions of the continuum spectral characteristics of 260 bursts in the first Burst And Transient Source Experiement (BATSE) catalog are presented. The data are derived from flux calculated from BATSE Large Area Detector (LAD) four-channel discriminator data. The data are converted from counts to protons using a direct spectral inversion technique to remove the effects of atmospheric scattering and the energy dependence of the detector angular response. Although there are intriguing clusters of bursts in the spectral hardness ratio distributions, no evidence for the presence of distinct burst classes based in spectral hardness ratios alone is found. All subsets of bursts selected for their spectral characteristics in this analysis exhibit spatial distributions consistent with isotropy. The spectral diversity of the burst population appears to be caused largely by the highly variable nature of the burst production mechanisms themselves.

MSL/Mastcam Multispectral Observations of Lower Mt. Sharp Units: Spectral Evidence of Distinct Alteration Environments

NASA Astrophysics Data System (ADS)

Wellington, D. F.; Bell, J. F., III; Johnson, J. R.; Fraeman, A. A.; Kinch, K. M.; Godber, A.; Rice, M. S.

2016-12-01

The Mars Science Laboratory Curiosity rover reached the lower units of Mt. Sharp in Gale Crater approximately two years ago. Along the traverse, Mastcam multispectral observations have documented the visible/near-IR spectral variability of drill tailings, bedrock, float rocks, fines, and other materials, recording a set of diverse reflectance properties in twelve unique filters over wavelengths 400-1100 nm. The most recent multi-filter images include new spectral diversity not encountered in near-field imaging acquired earlier in the mission. Since departing Marias Pass ( sol 1072), the rover has sampled material from the Stimson sandstone unit four times at two widely separated locations. These drill pairs were designed to investigate alteration regions visible as bright haloes bordering fractures in the bedrock. Drill fines and piles of dumped sample material from these sites (at Bridger Basin and on the Naukluft Plateau) were targeted for multispectral observations, which quantify the differences in overall reflectance and spectral shape between the unaltered Stimson material and the light-toned haloes. In the latter, high reflectances and relatively flat spectral shapes are consistent with interpretations of silica enrichment from other instruments. Mastcam spectra of the portions of the underlying Murray Formation (mudstone) that were encountered on first approach to the Bagnold dunes, and again upon exiting the Naukluft Plateau, are consistent with the presence of crystalline hematite. Variations in the relative strength of hematite absorption features in different locations may suggest possible differences in relative and/or absolute abundances of hematite of varying degrees of crystallinity. Dune materials have low reflectances with a broad, shallow absorption near 1-µm consistent with an olivine-bearing basaltic composition. We present these and other examples of spectral variability encountered by the rover during its ascent up the lower slopes of Mt

Spatial and spectral interpolation of ground-motion intensity measure observations

USGS Publications Warehouse

Worden, Charles; Thompson, Eric M.; Baker, Jack W.; Bradley, Brendon A.; Luco, Nicolas; Wilson, David

2018-01-01

Following a significant earthquake, ground‐motion observations are available for a limited set of locations and intensity measures (IMs). Typically, however, it is desirable to know the ground motions for additional IMs and at locations where observations are unavailable. Various interpolation methods are available, but because IMs or their logarithms are normally distributed, spatially correlated, and correlated with each other at a given location, it is possible to apply the conditional multivariate normal (MVN) distribution to the problem of estimating unobserved IMs. In this article, we review the MVN and its application to general estimation problems, and then apply the MVN to the specific problem of ground‐motion IM interpolation. In particular, we present (1) a formulation of the MVN for the simultaneous interpolation of IMs across space and IM type (most commonly, spectral response at different oscillator periods) and (2) the inclusion of uncertain observation data in the MVN formulation. These techniques, in combination with modern empirical ground‐motion models and correlation functions, provide a flexible framework for estimating a variety of IMs at arbitrary locations.

Hypervelocity Impact Test Fragment Modeling: Modifications to the Fragment Rotation Analysis and Lightcurve Code

NASA Technical Reports Server (NTRS)

Gouge, Michael F.

2011-01-01

Hypervelocity impact tests on test satellites are performed by members of the orbital debris scientific community in order to understand and typify the on-orbit collision breakup process. By analysis of these test satellite fragments, the fragment size and mass distributions are derived and incorporated into various orbital debris models. These same fragments are currently being put to new use using emerging technologies. Digital models of these fragments are created using a laser scanner. A group of computer programs referred to as the Fragment Rotation Analysis and Lightcurve code uses these digital representations in a multitude of ways that describe, measure, and model on-orbit fragments and fragment behavior. The Dynamic Rotation subroutine generates all of the possible reflected intensities from a scanned fragment as if it were observed to rotate dynamically while in orbit about the Earth. This calls an additional subroutine that graphically displays the intensities and the resulting frequency of those intensities as a range of solar phase angles in a Probability Density Function plot. This document reports the additions and modifications to the subset of the Fragment Rotation Analysis and Lightcurve concerned with the Dynamic Rotation and Probability Density Function plotting subroutines.

VLA observations of unidentified Leiden-Berkeley Deep-Survey sources - Luminosity and redshift dependence of spectral properties

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kapahi, V.K.; Kulkarni, V.K.

1990-05-01

VLA observations of a complete subset of the Leiden-Berkeley Deep Survey sources that have S(1.4 GHz) greater than 10 mJy and are not optically identified down to F=22 mag are reported. By comparing the spectral and structural properties of the sources with samples from the literature, an attempt was made to disentangle the luminosity and redshift dependence of the spectral indices of extended emission in radio galaxies and of the incidence of compact steep-spectrum sources. It is found that the fraction of compact sources among those with a steep spectrum is related primarily to redshift, being much larger at highmore » redshifts for sources of similar radio luminosity. Only a weak and marginally significant dependence of spectral indices of the extended sources on luminosity and redshift is found in samples selected at 1.4 and 2.7 GHz. It is pointed out that the much stronger correlation of spectral indices with luminosity may be arising partly from spectral curvature, and partly due to the preferential inclusion of very steep-spectrum sources from high redshift in low-frequency surveys. 54 refs.« less

Assessment of the Spectral Stability of Libya 4, Libya 1, and Mauritania 2 Sites Using Earth Observing One Hyperion

NASA Technical Reports Server (NTRS)

Choi, Taeyoung; Xiong, Xiaoxiong; Angal, Amit; Chander, Gyanesh; Qu, John J.

2014-01-01

The objective of this paper is to formulate a methodology to assess the spectral stability of the Libya 4, Libya 1, and Mauritania 2 pseudo-invariant calibration sites (PICS) using Earth Observing One (EO-1) Hyperion sensor. All the available Hyperion collections, downloaded from the Earth Explorer website, were utilized for the three PICS. In each site, a reference spectrum is selected at a specific day in the vicinity of the region of interest (ROI) defined by Committee on Earth Observation Satellites (CEOS). A series of ROIs are predefined in the along-track direction with 196 spectral top-of-atmosphere reflectance values in each ROI. Based on the reference ROI spectrum, the spectral stability of these ROIs is evaluated by average deviations (ADs) and spectral angle mapper (SAM) methods in the specific ranges of time and geo-spatial locations. Time and ROI location-dependent SAM and AD results are very stable within +/- 2 deg and +/-1.7% of 1sigma standard deviations. Consequently, the Libya 4, Mauritania 2, and Libya 1 CEOS selected PICS are spectrally stable targets within the time and spatial swath ranges of the Hyperion collections.

Spectral Irradiance Calibration in the Infrared. Part 7; New Composite Spectra, Comparison with Model Atmospheres, and Far-Infrared Extrapolations

NASA Technical Reports Server (NTRS)

Cohen, Martin; Witteborn, Fred C.; Carbon, Duane F.; Davies, John K.; Wooden, Diane H.; Bregman, Jesse D.

1996-01-01

We present five new absolutely calibrated continuous stellar spectra constructed as far as possible from spectral fragments observed from the ground, the Kuiper Airborne Observatory (KAO), and the IRAS Low Resolution Spectrometer. These stars-alpha Boo, gamma Dra, alpha Cet, gamma Cru, and mu UMa-augment our six, published, absolutely calibrated spectra of K and early-M giants. All spectra have a common calibration pedigree. A revised composite for alpha Boo has been constructed from higher quality spectral fragments than our previously published one. The spectrum of gamma Dra was created in direct response to the needs of instruments aboard the Infrared Space Observatory (ISO); this star's location near the north ecliptic pole renders it highly visible throughout the mission. We compare all our low-resolution composite spectra with Kurucz model atmospheres and find good agreement in shape, with the obvious exception of the SiO fundamental, still lacking in current grids of model atmospheres. The CO fundamental seems slightly too deep in these models, but this could reflect our use of generic models with solar metal abundances rather than models specific to the metallicities of the individual stars. Angular diameters derived from these spectra and models are in excellent agreement with the best observed diameters. The ratio of our adopted Sirius and Vega models is vindicated by spectral observations. We compare IRAS fluxes predicted from our cool stellar spectra with those observed and conclude that, at 12 and 25 microns, flux densities measured by IRAS should be revised downwards by about 4.1% and 5.7%, respectively, for consistency with our absolute calibration. We have provided extrapolated continuum versions of these spectra to 300 microns, in direct support of ISO (PHT and LWS instruments). These spectra are consistent with IRAS flux densities at 60 and 100 microns.

Hydrocarbon Spectral Database

National Institute of Standards and Technology Data Gateway

SRD 115 Hydrocarbon Spectral Database (Web, free access)   All of the rotational spectral lines observed and reported in the open literature for 91 hydrocarbon molecules have been tabulated. The isotopic molecular species, assigned quantum numbers, observed frequency, estimated measurement uncertainty and reference are given for each transition reported.

Diatomic Spectral Database

National Institute of Standards and Technology Data Gateway

SRD 114 Diatomic Spectral Database (Web, free access)   All of the rotational spectral lines observed and reported in the open literature for 121 diatomic molecules have been tabulated. The isotopic molecular species, assigned quantum numbers, observed frequency, estimated measurement uncertainty, and reference are given for each transition reported.

Triatomic Spectral Database

National Institute of Standards and Technology Data Gateway

SRD 117 Triatomic Spectral Database (Web, free access)   All of the rotational spectral lines observed and reported in the open literature for 55 triatomic molecules have been tabulated. The isotopic molecular species, assigned quantum numbers, observed frequency, estimated measurement uncertainty and reference are given for each transition reported.

Detection of pit fragments in fresh cherries using near infrared spectroscopy

USDA-ARS?s Scientific Manuscript database

NIR spectroscopy in the wavelength region from 900nm to 2600nm was evaluated as the basis for a rapid, non-destructive method for the detection of pits and pit fragments in fresh cherries. Partial Least Squares discriminant analysis (PLS-DA) following various spectral pretreatments was applied to sp...

The Evolution of Grain Size Distribution in Explosive Rock Fragmentation - Sequential Fragmentation Theory Revisited

NASA Astrophysics Data System (ADS)

Scheu, B.; Fowler, A. C.

2015-12-01

Fragmentation is a ubiquitous phenomenon in many natural and engineering systems. It is the process by which an initially competent medium, solid or liquid, is broken up into a population of constituents. Examples occur in collisions and impacts of asteroids/meteorites, explosion driven fragmentation of munitions on a battlefield, as well as of magma in a volcanic conduit causing explosive volcanic eruptions and break-up of liquid drops. Besides the mechanism of fragmentation the resulting frequency-size distribution of the generated constituents is of central interest. Initially their distributions were fitted empirically using lognormal, Rosin-Rammler and Weibull distributions (e.g. Brown & Wohletz 1995). The sequential fragmentation theory (Brown 1989, Wohletz at al. 1989, Wohletz & Brown 1995) and the application of fractal theory to fragmentation products (Turcotte 1986, Perfect 1997, Perugini & Kueppers 2012) attempt to overcome this shortcoming by providing a more physical basis for the applied distribution. Both rely on an at least partially scale-invariant and thus self-similar random fragmentation process. Here we provide a stochastic model for the evolution of grain size distribution during the explosion process. Our model is based on laboratory experiments in which volcanic rock samples explode naturally when rapidly depressurized from initial pressures of several MPa to ambient conditions. The physics governing this fragmentation process has been successfully modelled and the observed fragmentation pattern could be numerically reproduced (Fowler et al. 2010). The fragmentation of these natural rocks leads to grain size distributions which vary depending on the experimental starting conditions. Our model provides a theoretical description of these different grain size distributions. Our model combines a sequential model of the type outlined by Turcotte (1986), but generalized to cater for the explosive process appropriate here, in particular by

Calibration of Herschel SPIRE FTS observations at different spectral resolutions

NASA Astrophysics Data System (ADS)

Marchili, N.; Hopwood, R.; Fulton, T.; Polehampton, E. T.; Valtchanov, I.; Zaretski, J.; Naylor, D. A.; Griffin, M. J.; Imhof, P.; Lim, T.; Lu, N.; Makiwa, G.; Pearson, C.; Spencer, L.

2017-01-01

The SPIRE Fourier Transform Spectrometer on-board the Herschel Space Observatory had two standard spectral resolution modes for science observations: high resolution (HR) and low resolution (LR), which could also be performed in sequence (H+LR). A comparison of the HR and LR resolution spectra taken in this sequential mode revealed a systematic discrepancy in the continuum level. Analysing the data at different stages during standard pipeline processing demonstrates that the telescope and instrument emission affect HR and H+LR observations in a systematically different way. The origin of this difference is found to lie in the variation of both the telescope and instrument response functions, while it is triggered by fast variation of the instrument temperatures. As it is not possible to trace the evolution of the response functions using housekeeping data from the instrument subsystems, the calibration cannot be corrected analytically. Therefore, an empirical correction for LR spectra has been developed, which removes the systematic noise introduced by the variation of the response functions.

Hyper-spectral imager of the visible band for lunar observations

NASA Astrophysics Data System (ADS)

Lim, Y.-M.; Choi, Y.-J.; Jo, Y.-S.; Lim, T.-H.; Ham, J.; Min, K. W.; Choi, Y.-W.

2013-06-01

A prototype hyper-spectral imager in the visible spectral band was developed for the planned Korean lunar missions in the 2020s. The instrument is based on simple refractive optics that adopted a linear variable filter and an interline charge-coupled device. This prototype imager is capable of mapping the lunar surface at wavelengths ranging from 450 to 900 nm with a spectral resolution of ˜8 nm and selectable channels ranging from 5 to 252. The anticipated spatial resolution is 17.2 m from an altitude of 100 km with a swath width of 21 km

Combinatorial Labeling Method for Improving Peptide Fragmentation in Mass Spectrometry

NASA Astrophysics Data System (ADS)

Kuchibhotla, Bhanuramanand; Kola, Sankara Rao; Medicherla, Jagannadham V.; Cherukuvada, Swamy V.; Dhople, Vishnu M.; Nalam, Madhusudhana Rao

2017-06-01

Annotation of peptide sequence from tandem mass spectra constitutes the central step of mass spectrometry-based proteomics. Peptide mass spectra are obtained upon gas-phase fragmentation. Identification of the protein from a set of experimental peptide spectral matches is usually referred as protein inference. Occurrence and intensity of these fragment ions in the MS/MS spectra are dependent on many factors such as amino acid composition, peptide basicity, activation mode, protease, etc. Particularly, chemical derivatizations of peptides were known to alter their fragmentation. In this study, the influence of acetylation, guanidinylation, and their combination on peptide fragmentation was assessed initially on a lipase (LipA) from Bacillus subtilis followed by a bovine six protein mix digest. The dual modification resulted in improved fragment ion occurrence and intensity changes, and this resulted in the equivalent representation of b- and y-type fragment ions in an ion trap MS/MS spectrum. The improved representation has allowed us to accurately annotate the peptide sequences de novo. Dual labeling has significantly reduced the false positive protein identifications in standard bovine six peptide digest. Our study suggests that the combinatorial labeling of peptides is a useful method to validate protein identifications for high confidence protein inference. [Figure not available: see fulltext.

Observation and theory of reorientation-induced spectral diffusion in polarization-selective 2D IR spectroscopy.

PubMed

Kramer, Patrick L; Nishida, Jun; Giammanco, Chiara H; Tamimi, Amr; Fayer, Michael D

2015-05-14

In nearly all applications of ultrafast multidimensional infrared spectroscopy, the spectral degrees of freedom (e.g., transition frequency) and the orientation of the transition dipole are assumed to be decoupled. We present experimental results which confirm that frequency fluctuations can be caused by rotational motion and observed under appropriate conditions. A theory of the frequency-frequency correlation function (FFCF) observable under various polarization conditions is introduced, and model calculations are found to reproduce the qualitative trends in FFCF rates. The FFCF determined with polarization-selective two-dimensional infrared (2D IR) spectroscopy is a direct reporter of the frequency-rotational coupling. For the solute methanol in a room temperature ionic liquid, the FFCF of the hydroxyl (O-D) stretch decays due to spectral diffusion with different rates depending on the polarization of the excitation pulses. The 2D IR vibrational echo pulse sequence consists of three excitation pulses that generate the vibrational echo, a fourth pulse. A faster FFCF decay is observed when the first two excitation pulses are polarized perpendicular to the third pulse and the echo, 〈XXY Y〉, than in the standard all parallel configuration, 〈XXXX〉, in which all four pulses have the same polarization. The 2D IR experiment with polarizations 〈XY XY〉 ("polarization grating" configuration) gives a FFCF that decays even more slowly than in the 〈XXXX〉 configuration. Polarization-selective 2D IR spectra of bulk water do not exhibit polarization-dependent FFCF decays; spectral diffusion is effectively decoupled from reorientation in the water system.

Observation and theory of reorientation-induced spectral diffusion in polarization-selective 2D IR spectroscopy

NASA Astrophysics Data System (ADS)

Kramer, Patrick L.; Nishida, Jun; Giammanco, Chiara H.; Tamimi, Amr; Fayer, Michael D.

2015-05-01

In nearly all applications of ultrafast multidimensional infrared spectroscopy, the spectral degrees of freedom (e.g., transition frequency) and the orientation of the transition dipole are assumed to be decoupled. We present experimental results which confirm that frequency fluctuations can be caused by rotational motion and observed under appropriate conditions. A theory of the frequency-frequency correlation function (FFCF) observable under various polarization conditions is introduced, and model calculations are found to reproduce the qualitative trends in FFCF rates. The FFCF determined with polarization-selective two-dimensional infrared (2D IR) spectroscopy is a direct reporter of the frequency-rotational coupling. For the solute methanol in a room temperature ionic liquid, the FFCF of the hydroxyl (O-D) stretch decays due to spectral diffusion with different rates depending on the polarization of the excitation pulses. The 2D IR vibrational echo pulse sequence consists of three excitation pulses that generate the vibrational echo, a fourth pulse. A faster FFCF decay is observed when the first two excitation pulses are polarized perpendicular to the third pulse and the echo, , than in the standard all parallel configuration, , in which all four pulses have the same polarization. The 2D IR experiment with polarizations ("polarization grating" configuration) gives a FFCF that decays even more slowly than in the configuration. Polarization-selective 2D IR spectra of bulk water do not exhibit polarization-dependent FFCF decays; spectral diffusion is effectively decoupled from reorientation in the water system.

Spectral Diversity at Gusev Crater from Coordinated Mini-TES and Pancam Observations

NASA Technical Reports Server (NTRS)

Blaney, D. L.; Bell, James F., III; Cabrol, Nathalie; Christensen, Phil; Farrand, William H.; Ming, Doug; Moersch, Jeff; Ruff, Steve

2005-01-01

During the last year the Spirit rover has explored Gusev crater with the Athena payload. Two remote sensing instruments collected spectral information at visible (Pancam) and at thermal infrared Mini-TES) wavelengths. Observations for these instruments were coordinated and targeted to determine the mineralogical diversity and identify specific lithologies / end members for detailed investigations with the rest of the payload. Initial results were reported last spring. A wide range of materials have been measured including outcrops, rocks, and soils. Both natural and brushed/ratted rocks and natural and disturbed soils have also been measured permitting investigations of coating and soil structure. As of Jan 9, 2005, over 400 coordinated observations have been made.

Observation-Based Dissipation and Input Terms for Spectral Wave Models, with End-User Testing

DTIC Science & Technology

2014-09-30

scale influence of the Great barrier reef matrix on wave attenuation, Coral Reefs [published, refereed] Ghantous, M., and A.V. Babanin, 2014: One...Observation-Based Dissipation and Input Terms for Spectral Wave Models...functions, based on advanced understanding of physics of air-sea interactions, wave breaking and swell attenuation, in wave - forecast models. OBJECTIVES The

Spatial Variations of Spectral Properties of (21) Lutetia as Observed by OSIRIS/Rosetta

NASA Astrophysics Data System (ADS)

Leyrat, Cedric; Sierks, H.; Barbieri, C.; Barucci, A.; Da Deppo, V.; De Leon, J.; Fulchignoni, M.; Fornasier, S.; Groussin, O.; Hviid, S. F.; Jorda, L.; Keller, H. U.; La Forgia, F.; Lara, L.; Lazzarin, M.; Magrin, S.; Marchi, S.; Thomas, N.; Schroder, S. E.; OSIRIS Team

2010-10-01

On July 10, 2010, the Rosetta ESA/NASA spacecraft successfully flew by the asteroid (21) Lutetia, which becomes the largest asteroid observed by a space probe. The closest approach occurred at 15H45 UTC at a relative speed of 15km/s and a relative distance of 3160 km. The Narrow Angle Camera (NAC) and the Wide Angle Camera (WAC) of the OSIRIS instrument onboard Rosetta acquired images at different phase angles ranging from almost zero to more than 150 degrees. The best spatial resolution (60 m/pixel) allowed to reveal a very complex topography with several features and different crater's surface densities. Spectrophotometric analysis of the data could suggest spatial variations of the albedo and spectral properties at the surface of the asteroid, at least in the northern hemisphere. Numerous sets of data have been obtained at different wavelengths from 270nm to 980nm. We will first present a color-color analysis of data in order to locate landscapes where surface variegation is present. We will also present a more accurate study of spectral properties using the shape model and different statistical methods. Possible variations of the surface spectral properties with the slope of the ground and the gravity field orientation will be discussed as well.

Negative Ion CID Fragmentation of O-linked Oligosaccharide Aldoses—Charge Induced and Charge Remote Fragmentation

NASA Astrophysics Data System (ADS)

Doohan, Roisin A.; Hayes, Catherine A.; Harhen, Brendan; Karlsson, Niclas Göran

2011-06-01

Collision induced dissociation (CID) fragmentation was compared between reducing and reduced sulfated, sialylated, and neutral O-linked oligosaccharides. It was found that fragmentation of the [M - H]- ions of aldoses with acidic residues gave unique Z-fragmentation of the reducing end GalNAc containing the acidic C-6 branch, where the entire C-3 branch was lost. This fragmentation pathway, which is not seen in the alditols, showed that the process involved charge remote fragmentation catalyzed by a reducing end acidic anomeric proton. With structures containing sialic acid on both the C-3 and C-6 branch, the [M - H]- ions were dominated by the loss of sialic acid. This fragmentation pathway was also pronounced in the [M - 2H]2- ions revealing both the C-6 Z-fragment plus its complementary C-3 C-fragment in addition to glycosidic and cross ring fragmentation. This generation of the Z/C-fragment pairs from GalNAc showed that the charges were not participating in their generation. Fragmentation of neutral aldoses showed pronounced Z-fragmentation believed to be generated by proton migration from the C-6 branch to the negatively charged GalNAc residue followed by charge remote fragmentation similar to the acidic oligosaccharides. In addition, A-type fragments generated by charge induced fragmentation of neutral oligosaccharides were observed when the charge migrated from C-1 of the GalNAc to the GlcNAc residue followed by rearrangement to accommodate the 0,2A-fragmentation. LC-MS also showed that O-linked aldoses existed as interchangeable α/β pyranose anomers, in addition to a third isomer (25% of the total free aldose) believed to be the furanose form.

Analytical Utility of Mass Spectral Binning in Proteomic Experiments by SPectral Immonium Ion Detection (SPIID)*

PubMed Central

Kelstrup, Christian D.; Frese, Christian; Heck, Albert J. R.; Olsen, Jesper V.; Nielsen, Michael L.

2014-01-01

Unambiguous identification of tandem mass spectra is a cornerstone in mass-spectrometry-based proteomics. As the study of post-translational modifications (PTMs) by means of shotgun proteomics progresses in depth and coverage, the ability to correctly identify PTM-bearing peptides is essential, increasing the demand for advanced data interpretation. Several PTMs are known to generate unique fragment ions during tandem mass spectrometry, the so-called diagnostic ions, which unequivocally identify a given mass spectrum as related to a specific PTM. Although such ions offer tremendous analytical advantages, algorithms to decipher MS/MS spectra for the presence of diagnostic ions in an unbiased manner are currently lacking. Here, we present a systematic spectral-pattern-based approach for the discovery of diagnostic ions and new fragmentation mechanisms in shotgun proteomics datasets. The developed software tool is designed to analyze large sets of high-resolution peptide fragmentation spectra independent of the fragmentation method, instrument type, or protease employed. To benchmark the software tool, we analyzed large higher-energy collisional activation dissociation datasets of samples containing phosphorylation, ubiquitylation, SUMOylation, formylation, and lysine acetylation. Using the developed software tool, we were able to identify known diagnostic ions by comparing histograms of modified and unmodified peptide spectra. Because the investigated tandem mass spectra data were acquired with high mass accuracy, unambiguous interpretation and determination of the chemical composition for the majority of detected fragment ions was feasible. Collectively we present a freely available software tool that allows for comprehensive and automatic analysis of analogous product ions in tandem mass spectra and systematic mapping of fragmentation mechanisms related to common amino acids. PMID:24895383

Shuttle data book: SRM fragment velocity model. Presented to the SRB Fragment Model Review Panel

NASA Technical Reports Server (NTRS)

1989-01-01

This study was undertaken to determine the velocity of fragments generated by the range safety destruction (RSD) or random failure of a Space Transportation System (STS) Solid Rocket Motor (SRM). The specific requirement was to provide a fragment model for use in those Galileo and Ulysses RTG safety analyses concerned with possible fragment impact on the spacecraft radioisotope thermoelectric generators (RTGS). Good agreement was obtained between predictions and observations for fragment velocity, velocity distributions, azimuths, and rotation rates. Based on this agreement with the entire data base, the model was used to predict the probable fragment environments which would occur in the event of an STS-SRM RSD or randon failure at 10, 74, 84 and 110 seconds. The results of these predictions are the basis of the fragment environments presented in the Shuttle Data Book (NSTS-08116). The information presented here is in viewgraph form.

Velocity distribution of fragments of catastrophic impacts

NASA Technical Reports Server (NTRS)

Takagi, Yasuhiko; Kato, Manabu; Mizutani, Hitoshi

1992-01-01

Three dimensional velocities of fragments produced by laboratory impact experiments were measured for basalts and pyrophyllites. The velocity distribution of fragments obtained shows that the velocity range of the major fragments is rather narrow, at most within a factor of 3 and that no clear dependence of velocity on the fragment mass is observed. The NonDimensional Impact Stress (NDIS) defined by Mizutani et al. (1990) is found to be an appropriate scaling parameter to describe the overall fragment velocity as well as the antipodal velocity.

Fragmentation increases wind disturbance impacts on forest structure and carbon stocks in a western Amazonian landscape.

PubMed

Schwartz, Naomi B; Uriarte, María; DeFries, Ruth; Bedka, Kristopher M; Fernandes, Katia; Gutiérrez-Vélez, Victor; Pinedo-Vasquez, Miguel A

2017-09-01

Tropical second-growth forests could help mitigate climate change, but the degree to which their carbon potential is achieved will depend on exposure to disturbance. Wind disturbance is common in tropical forests, shaping structure, composition, and function, and influencing successional trajectories. However, little is known about the impacts of extreme winds on second-growth forests in fragmented landscapes, though these ecosystems are often located in mosaics of forest, pasture, cropland, and other land cover types. Indirect evidence suggests that fragmentation increases risk of wind damage in tropical forests, but no studies have found such impacts following severe storms. In this study, we ask whether fragmentation and forest type (old vs. second growth) were associated with variation in wind damage after a severe convective storm in a fragmented production landscape in western Amazonia. We applied linear spectral unmixing to Landsat 8 imagery from before and after the storm, and combined it with field observations of damage to map wind effects on forest structure and biomass. We also used Landsat 8 imagery to map land cover with the goals of identifying old- and second-growth forest and characterizing fragmentation. We used these data to assess variation in wind disturbance across 95,596 ha of forest, distributed over 6,110 patches. We find that fragmentation is significantly associated with wind damage, with damage severity higher at forest edges and in edgier, more isolated patches. Damage was also more severe in old-growth than in second-growth forests, but this effect was weaker than that of fragmentation. These results illustrate the importance of considering landscape context in planning tropical forest restoration and natural regeneration projects. Assessments of long-term carbon sequestration potential need to consider spatial variation in disturbance exposure. Where risk of extreme winds is high, minimizing fragmentation and isolation could increase

The Progressive Fragmentation of 332P/Ikeya-Murakami

NASA Astrophysics Data System (ADS)

Kleyna, J. T.; Ye, Q.-Z.; Hui, M.-T.; Meech, K. J.; Wainscoat, R.; Micheli, M.; Keane, J. V.; Weaver, H. A.; Weryk, R.

2016-08-01

We describe 2016 January-April observations of the fragments of 332P/Ikeya-Murakami, a comet earlier observed in a 2010 October outburst. We present photometry of the fragments and perform simulations to infer the time of breakup. We argue that the eastern-most rapidly brightening fragment (F4) best corresponds to the original nucleus, rather than the initial bright fragment F1. We compute radial and tangential nongravitational parameters, A 1 = (1.5 ± 0.4) × 10-8 au day-2 and (7.2 ± 1.9) × 10-9 au day-2 both are consistent with zero at the 4σ level. Monte Carlo simulations indicate that the fragments were emitted on the outbound journey well after the 2010 outburst, with bright fragment F1 splitting in early 2014 and the fainter fragments within months of the 2016 January recovery. Western fragment F7 is the oldest, dating from 2011. We suggest that the delayed onset of the splitting is consistent with a self-propagating crystallization of water ice.

Observation of medium induced modifications of jet fragmentation in PbPb collisions using isolated-photon-tagged jets

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sirunyan, Albert M; et al.

Measurements of fragmentation functions for jets associated with an isolated photon are presented for the first time in pp and PbPb collisions. The analysis uses data collected with the CMS detector at the CERN LHC at a nucleon-nucleon center-of-mass energy of 5.02 TeV. Fragmentation functions are obtained for jets with pmore » $$_\\mathrm{T}^\\text{jet} >$$ 30 GeV in events containing an isolated photon with p$$_\\mathrm{T}^\\gamma>$$ 60 GeV, using charged tracks with transverse momentum p$$_\\mathrm{T}^\\text{trk} >$$ 1 GeV in a cone around the jet axis. The association with an isolated photon constrains the initial p$$_\\mathrm{T}$$ and azimuthal angle of the parton whose shower produced the jet. For central PbPb collisions, modifications of the jet fragmentation functions are observed when compared to those measured in pp collisions, while no significant differences are found in the 50% most peripheral collisions. Jets in central PbPb events show an excess (depletion) of low (high) p$$_\\mathrm{T}$$ particles, with a transition around 3 GeV.« less

Ion nose spectral structures observed by the Van Allen Probes

NASA Astrophysics Data System (ADS)

Ferradas, C. P.; Zhang, J.-C.; Spence, H. E.; Kistler, L. M.; Larsen, B. A.; Reeves, G.; Skoug, R.; Funsten, H.

2016-12-01

We present a statistical study of nose-like structures observed in energetic hydrogen, helium, and oxygen ions near the inner edge of the plasma sheet. Nose structures are spectral features named after the characteristic shapes of energy bands or gaps in the energy-time spectrograms of in situ measured ion fluxes. Using 22 months of observations from the Helium Oxygen Proton Electron instrument onboard Van Allen Probe A, we determine the number of noses observed, and the minimum L shell reached and energy of each nose on each pass through the inner magnetosphere. We find that multiple noses occur more frequently in heavy ions than in H+ and are most often observed during quiet times. The heavy-ion noses penetrate to lower L shells than H+ noses, and there is an energy-magnetic local time (MLT) dependence in the nose locations and energies that is similar for all species. The observations are interpreted by using a steady state model of ion drift in the inner magnetosphere. The model is able to explain the energy and MLT dependence of the different types of nose structures. Different ion charge-exchange lifetimes are the main cause for the deeper penetration of heavy-ion noses. The species dependence and preferred geomagnetic conditions of multiple-nose events indicate that they must be on long drift paths, leading to strong charge-exchange effects. The results provide important insight into the spatial distribution, species dependence, and geomagnetic conditions under which nose structures occur.

Predictions for boson-jet observables and fragmentation function ratios from a hybrid strong/weak coupling model for jet quenching

DOE PAGES

Casalderrey-Solana, Jorge; Gulhan, Doga Can; Milhano, José Guilherme; ...

2016-03-09

We have previously introduced a hybrid strong/weak coupling model for jet quenching in heavy ion collisions in which we describe the production and fragmentation of jets at weak coupling, using Pythia, and describe the rate at which each parton in the jet shower loses energy as it propagates through the strongly coupled plasma, dE/dx, using an expression computed holographically at strong coupling. The model has a single free parameter that we fit to a single experimental measurement. We then confront our model with experimental data on many other jet observables, focusing in this paper on boson-jet observables, finding that itmore » provides a good description of present jet data. Next, we provide the predictions of our hybrid model for many measurements to come, including those for inclusive jet, dijet, photon-jet and Z-jet observables in heavy ion collisions with energy √s = 5 : 02 ATeV coming soon at the LHC. As the statistical uncertainties on near-future measurements of photon-jet observables are expected to be much smaller than those in present data, with about an order of magnitude more photon-jet events expected, predictions for these observables are particularly important. We find that most of our pre- and post-dictions do not depend sensitively on the form we choose for the rate of energy loss dE/dx of the partons in the shower. This gives our predictions considerable robustness. To better discriminate between possible forms for the rate of energy loss, though, we must turn to intrajet observables. Here, we focus on ratios of fragmentation functions. Finally, we close with a suggestion for a particular ratio, between the fragmentation functions of inclusive and associated jets with the same kinematics in the same collisions, which is particularly sensitive to the x- and E-dependence of dE/dx, and hence may be used to learn which mechanism of parton energy loss best describes the quenching of jets.« less

A new X-ray spectral observation of NGC 1068

NASA Technical Reports Server (NTRS)

Marshall, F. E.; Netzer, H.; Arnaud, K. A.; Boldt, E. A.; Holt, S. S.; Jahoda, K. M.; Kelley, R.; Mushotzky, R. F.; Petre, R.; Serlemitsos, P. J.

1993-01-01

A new X-ray observation of NGC 1068, in which improved spectral resolution (R is approximately equal to 40) and broad energy range provide important new constraints on models for this galaxy, is reported. The observed X-ray continuum of NGC 1068 from 0.3 to 10 keV is well fitted as the sum of two power-law spectra with no evidence for absorption intrinsic to the source. Strong Fe K emission lines with a total equivalent width of 2700 eV were detected due to iron less ionized than Fe XX and to iron more ionized than Fe XXIII. No evidence was seen for lines due to the recombination of highly ionized oxygen with an upper limit for the O Ly-alpha emission line of 40 eV. The discovery of multiple Fe K and Fe L emission lines indicates a broad range of ionization states for this gas. The X-ray emission from the two components is modeled for various geometries using a photoionization code that calculates the temperature and ionization state of the gas. Typical model parameters are a total Compton depth of a few percent, an inner boundary of the hot component of about 1 pc, and an inner boundary of the warm component of about 20 pc.

IMPACT fragmentation model developments

NASA Astrophysics Data System (ADS)

Sorge, Marlon E.; Mains, Deanna L.

2016-09-01

The IMPACT fragmentation model has been used by The Aerospace Corporation for more than 25 years to analyze orbital altitude explosions and hypervelocity collisions. The model is semi-empirical, combining mass, energy and momentum conservation laws with empirically derived relationships for fragment characteristics such as number, mass, area-to-mass ratio, and spreading velocity as well as event energy distribution. Model results are used for several types of analysis including assessment of short-term risks to satellites from orbital altitude fragmentations, prediction of the long-term evolution of the orbital debris environment and forensic assessments of breakup events. A new version of IMPACT, version 6, has been completed and incorporates a number of advancements enabled by a multi-year long effort to characterize more than 11,000 debris fragments from more than three dozen historical on-orbit breakup events. These events involved a wide range of causes, energies, and fragmenting objects. Special focus was placed on the explosion model, as the majority of events examined were explosions. Revisions were made to the mass distribution used for explosion events, increasing the number of smaller fragments generated. The algorithm for modeling upper stage large fragment generation was updated. A momentum conserving asymmetric spreading velocity distribution algorithm was implemented to better represent sub-catastrophic events. An approach was developed for modeling sub-catastrophic explosions, those where the majority of the parent object remains intact, based on estimated event energy. Finally, significant modifications were made to the area-to-mass ratio distribution to incorporate the tendencies of different materials to fragment into different shapes. This ability enabled better matches between the observed area-to-mass ratios and those generated by the model. It also opened up additional possibilities for post-event analysis of breakups. The paper will discuss

A statistical model of aggregate fragmentation

NASA Astrophysics Data System (ADS)

Spahn, F.; Vieira Neto, E.; Guimarães, A. H. F.; Gorban, A. N.; Brilliantov, N. V.

2014-01-01

A statistical model of fragmentation of aggregates is proposed, based on the stochastic propagation of cracks through the body. The propagation rules are formulated on a lattice and mimic two important features of the process—a crack moves against the stress gradient while dissipating energy during its growth. We perform numerical simulations of the model for two-dimensional lattice and reveal that the mass distribution for small- and intermediate-size fragments obeys a power law, F(m)∝m-3/2, in agreement with experimental observations. We develop an analytical theory which explains the detected power law and demonstrate that the overall fragment mass distribution in our model agrees qualitatively with that one observed in experiments.

Could the differences in the biochemistry of prostate carcinoma compared to benign prostate tissue biopsy fragments be evaluated through Raman spectroscopy?

NASA Astrophysics Data System (ADS)

Silveira, Landulfo; Leite, Kátia Ramos M.; Srougi, Miguel; Silveira, Fabrício L.; Pacheco, Marcos Tadeu T.; Zângaro, Renato A.; Pasqualucci, Carlos A.

2013-03-01

It has been proposed a spectral model to evaluate the biochemical differences between prostate carcinoma and benign fragments using dispersive Raman spectroscopy. We have examined 51 prostate fragments from surgically removed PrCa; each fragment was snap-frozen and stored (-80°C) prior spectral analysis. Raman spectrum was measured using a Raman spectrometer (830 nm excitation) coupled to a fiber-optic probe. Integration time and laser power were set to 50 s and 300 mW, respectively. It has been collected triplicate spectra from each fragment (total 153 spectra). Some samples exhibited a strong fluorescence, which was removed by a 7th order polynomial fitting. It has been developed a spectral model based on the least-squares fitting of the spectra of pure biochemicals (actin, collagen, elastin, carotene, glycogen, phosphatidylcholine, hemoglobin, and water) with the spectra of tissues, where the fitting parameters are the relative contribution of the compounds to the tissue spectrum. The spectra (600-1800 cm-1 range) are dominated by bands of proteins; it has been found a small difference in the mean spectra of PrCa compared to the benign tissue, mainly in the 1000-1400 cm-1 region, indicating similar biochemical constitution. The spectral fitting model revealed that elastin and phosphatidylcholine were increased in PrCa, whereas blood and water were reduced in malignant lesions (p < 0.05). A discrimination of PrCa from benign tissue using Mahalanobis distance applied to the contribution of elastin, hemoglobin and phosphatidylcholine resulted in sensitivity of 72% and specificity of 70%.

Searching for a Differentiated Asteroid Family: A Spectral Survey of the Massalia, Merxia, and Agnia Families

NASA Astrophysics Data System (ADS)

Thomas, Cristina A.; Moskovitz, Nicholas; Lim, Lucy F.; Trilling, David E.

2017-10-01

Asteroid families were formed by catastrophic collisions or large cratering events that caused fragmentation of the parent body and ejection of asteroidal fragments with velocities sufficient to prevent re-accretion. Due to these formation processes, asteroid families provide us with the opportunity to probe the interiors of the former parent bodies. Differentiation of a large initially chondritic parent body is expected to result in an “onion shell" object with an iron-nickel core, a thick olivine-dominated mantle, and a thin plagioclase/pyroxene crust. However, most asteroid families tend to show similar spectra (and therefore composition) among the members. Spectroscopic studies have observed a paucity of metal-like materials and olivine-dominated assemblages within Main Belt asteroid families.The deficit of olivine-rich mantle material in the meteorite record and in asteroid observations is known as the “Missing Mantle" problem. For years the best explanation has been the “battered to bits" hypothesis: differentiated parent bodies (aside from Vesta) were disrupted very early in the Solar System and the olivine-rich material was collisionally broken down over time. Alternatively, Elkins-Tanton et al. (2013) have suggested that previous work has overestimated the amount of olivine produced by the differentiation of a chondritic parent body.We have completed a visible and near-infrared wavelength spectral survey of asteroids in the Massalia, Merxia, and Agnia S-type Main Belt asteroid families. These families were carefully chosen for the spectroscopic survey because they have compositions most closely associated with a history of thermal metamorphism and because they represent a range of collisional formation scenarios. Additionally, members of the Merxia and Agnia families were identified as products of differentiation by Sunshine et al. (2004).Our spectral analyses suggest that the observed families contain products of partial differentiation. We will

Curatr: a web application for creating, curating and sharing a mass spectral library.

PubMed

Palmer, Andrew; Phapale, Prasad; Fay, Dominik; Alexandrov, Theodore

2018-04-15

We have developed a web application curatr for the rapid generation of high quality mass spectral fragmentation libraries from liquid-chromatography mass spectrometry datasets. Curatr handles datasets from single or multiplexed standards and extracts chromatographic profiles and potential fragmentation spectra for multiple adducts. An intuitive interface helps users to select high quality spectra that are stored along with searchable molecular information, the providence of each standard and experimental metadata. Curatr supports exports to several standard formats for use with third party software or submission to repositories. We demonstrate the use of curatr to generate the EMBL Metabolomics Core Facility spectral library http://curatr.mcf.embl.de. Source code and example data are at http://github.com/alexandrovteam/curatr/. palmer@embl.de. Supplementary data are available at Bioinformatics online.

Spectral Irradiance Calibration in the Infrared. 4; 1.2-35um Spectra of Six Standard Stars

NASA Technical Reports Server (NTRS)

Cohen, Martin; Witteborn, Fred C.; Walker, Russell G.; Bregman, Jesse D.; Wooden, Diane H.

1995-01-01

We present five new absolutely calibrated continuous stellar spectra from 1.2 to 35 microns, constructed as far as possible from actual observed spectral fragments taken from the ground, the Kuiper Airborne Observatory (KAO), and the IRAS Low Resolution Spectrometer (LRS). These stars, Beta Peg, Delta Boo, Beta And, Beta Gem, and Delta Hya, augment our already created complete absolutely calibrated spectrum for a Tau. All these spectra have a common calibration pedigree. The wavelength coverage is ideal for calibration of many existing and proposed ground-based, airborne, and satellite sensors.

Model Atmospheres and Spectral Irradiance Library of the Exoplanet Host Stars Observed in the MUSCLES Survey

NASA Astrophysics Data System (ADS)

Linsky, Jeffrey

2017-08-01

We propose to compute state-of-the-art model atmospheres (photospheres, chromospheres, transition regions and coronae) of the 4 K and 7 M exoplanet host stars observed by HST in the MUSCLES Treasury Survey, the nearest host star Proxima Centauri, and TRAPPIST-1. Our semi-empirical models will fit theunique high-resolution panchromatic (X-ray to infrared) spectra of these stars in the MAST High-Level Science Products archive consisting of COS and STIS UV spectra and near-simultaneous Chandra, XMM-Newton, and ground-based observations. We will compute models with the fully tested SSRPM computer software incorporating 52 atoms and ions in full non-LTE (435,986 spectral lines) and the 20 most-abundant diatomic molecules (about 2 million lines). This code has successfully fit the panchromatic spectrum of the M1.5 V exoplanet host star GJ 832 (Fontenla et al. 2016), the first M star with such a detailed model, and solar spectra. Our models will (1) predict the unobservable extreme-UV spectra, (2) determine radiative energy losses and balancing heating rates throughout these atmospheres, (3) compute a stellar irradiance library needed to describe the radiation environment of potentially habitable exoplanets to be studied by TESS and JWST, and (4) in the long post-HST era when UV observations will not be possible, the stellar irradiance library will be a powerful tool for predicting the panchromatic spectra of host stars that have only limited spectral coverage, in particular no UV spectra. The stellar models and spectral irradiance library will be placed quickly in MAST.

Sustained Sleep Fragmentation Induces Sleep Homeostasis in Mice

PubMed Central

Baud, Maxime O.; Magistretti, Pierre J.; Petit, Jean-Marie

2015-01-01

Study Objectives: Sleep fragmentation (SF) is an integral feature of sleep apnea and other prevalent sleep disorders. Although the effect of repetitive arousals on cognitive performance is well documented, the effects of long-term SF on electroencephalography (EEG) and molecular markers of sleep homeostasis remain poorly investigated. To address this question, we developed a mouse model of chronic SF and characterized its effect on EEG spectral frequencies and the expression of genes previously linked to sleep homeostasis including clock genes, heat shock proteins, and plasticity-related genes. Design: N/A. Setting: Animal sleep research laboratory. Participants : Sixty-six C57BL6/J adult mice. Interventions: Instrumental sleep disruption at a rate of 60/h during 14 days Measurements and Results: Locomotor activity and EEG were recorded during 14 days of SF followed by recovery for 2 days. Despite a dramatic number of arousals and decreased sleep bout duration, SF minimally reduced total quantity of sleep and did not significantly alter its circadian distribution. Spectral analysis during SF revealed a homeostatic drive for slow wave activity (SWA; 1–4 Hz) and other frequencies as well (4–40 Hz). Recordings during recovery revealed slow wave sleep consolidation and a transient rebound in SWA, and paradoxical sleep duration. The expression of selected genes was not induced following chronic SF. Conclusions: Chronic sleep fragmentation (SF) increased sleep pressure confirming that altered quality with preserved quantity triggers core sleep homeostasis mechanisms. However, it did not induce the expression of genes induced by sleep loss, suggesting that these molecular pathways are not sustainably activated in chronic diseases involving SF. Citation: Baud MO, Magistretti PJ, Petit JM. Sustained sleep fragmentation induces sleep homeostasis in mice. SLEEP 2015;38(4):567–579. PMID:25325477

Ion nose spectral structures observed by the Van Allen Probes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ferradas, C. P.; Zhang, J. -C.; Spence, H. E.

Here, we present a statistical study of nose-like structures observed in energetic hydrogen, helium, and oxygen ions near the inner edge of the plasma sheet. Nose structures are spectral features named after the characteristic shapes of energy bands or gaps in the energy-time spectrograms of in situ measured ion fluxes. Using 22 months of observations from the Helium Oxygen Proton Electron (HOPE) instrument onboard Van Allen Probe A, we determine the number of noses observed, and the minimum L-shell reached and energy of each nose on each pass through the inner magnetosphere. We find that multiple noses occur more frequentlymore » in heavy ions than in H +, and are most often observed during quiet times. The heavy-ion noses penetrate to lower L shells than H + noses and there is an energy-magnetic local time (MLT) dependence in the nose locations and energies that is similar for all species. The observations are interpreted using a steady-state model of ion drift in the inner magnetosphere. The model is able to explain the energy and MLT dependence of the different types of nose structures. Different ion charge exchange lifetimes are the main cause for the deeper penetration of heavy-ion noses. The species dependence and preferred geomagnetic conditions of multiple-nose events indicate that they must be on long drift paths, leading to strong charge-exchange effects. The results provide important insight into the spatial distribution, species dependence, and geomagnetic conditions under which nose structures occur.« less

Ion nose spectral structures observed by the Van Allen Probes

DOE PAGES

Ferradas, C. P.; Zhang, J. -C.; Spence, H. E.; ...

2016-11-22

Here, we present a statistical study of nose-like structures observed in energetic hydrogen, helium, and oxygen ions near the inner edge of the plasma sheet. Nose structures are spectral features named after the characteristic shapes of energy bands or gaps in the energy-time spectrograms of in situ measured ion fluxes. Using 22 months of observations from the Helium Oxygen Proton Electron (HOPE) instrument onboard Van Allen Probe A, we determine the number of noses observed, and the minimum L-shell reached and energy of each nose on each pass through the inner magnetosphere. We find that multiple noses occur more frequentlymore » in heavy ions than in H +, and are most often observed during quiet times. The heavy-ion noses penetrate to lower L shells than H + noses and there is an energy-magnetic local time (MLT) dependence in the nose locations and energies that is similar for all species. The observations are interpreted using a steady-state model of ion drift in the inner magnetosphere. The model is able to explain the energy and MLT dependence of the different types of nose structures. Different ion charge exchange lifetimes are the main cause for the deeper penetration of heavy-ion noses. The species dependence and preferred geomagnetic conditions of multiple-nose events indicate that they must be on long drift paths, leading to strong charge-exchange effects. The results provide important insight into the spatial distribution, species dependence, and geomagnetic conditions under which nose structures occur.« less

High Spectral Resolution Observation of the Soft Diffuse X-ray Background in the Direction of the Galactic Anti-Center

NASA Astrophysics Data System (ADS)

Wulf, Dallas; Eckart, Mega E.; Galeazzi, Massimiliano; Jaeckel, Felix; Kelley, Richard L.; Kilbourne, Caroline A.; McCammon, Dan; Morgan, Kelsey M.; Porter, Frederick S.; Szymkowiak, Andrew E.

2018-01-01

High spectral resolution observations in the soft x-rays are necessary for understanding and modelling the hot component of the interstellar medium and its contribution to the Soft X-ray Background (SXRB). This extended source emission cannot be resolved with most wavelength dispersive spectrometers, making energy dispersive microcalorimeters the ideal choice for these observations. We present here the analysis of the most recent sounding rocket flight of the University of Wisconsin-Madison/Goddard Space Flight Center X-ray Quantum Calorimeter (XQC), a large area silicon thermistor microcalorimeter. This 111 second observation integrates a nearly 1 steradian field of view in the direction of the galactic anti-center (l, b = 165°, -5°) and features ~5 eV spectral resolution below 1 keV. Direct comparison will also be made to the previous, high-latitude observations.

Statistically Optimized Inversion Algorithm for Enhanced Retrieval of Aerosol Properties from Spectral Multi-Angle Polarimetric Satellite Observations

NASA Technical Reports Server (NTRS)

Dubovik, O; Herman, M.; Holdak, A.; Lapyonok, T.; Taure, D.; Deuze, J. L.; Ducos, F.; Sinyuk, A.

2011-01-01

The proposed development is an attempt to enhance aerosol retrieval by emphasizing statistical optimization in inversion of advanced satellite observations. This optimization concept improves retrieval accuracy relying on the knowledge of measurement error distribution. Efficient application of such optimization requires pronounced data redundancy (excess of the measurements number over number of unknowns) that is not common in satellite observations. The POLDER imager on board the PARASOL microsatellite registers spectral polarimetric characteristics of the reflected atmospheric radiation at up to 16 viewing directions over each observed pixel. The completeness of such observations is notably higher than for most currently operating passive satellite aerosol sensors. This provides an opportunity for profound utilization of statistical optimization principles in satellite data inversion. The proposed retrieval scheme is designed as statistically optimized multi-variable fitting of all available angular observations obtained by the POLDER sensor in the window spectral channels where absorption by gas is minimal. The total number of such observations by PARASOL always exceeds a hundred over each pixel and the statistical optimization concept promises to be efficient even if the algorithm retrieves several tens of aerosol parameters. Based on this idea, the proposed algorithm uses a large number of unknowns and is aimed at retrieval of extended set of parameters affecting measured radiation.

Universal odd-even staggering in isotopic fragmentation and spallation cross sections of neutron-rich fragments

NASA Astrophysics Data System (ADS)

Mei, B.; Tu, X. L.; Wang, M.

2018-04-01

An evident odd-even staggering (OES) in fragment cross sections has been experimentally observed in many fragmentation and spallation reactions. However, quantitative comparisons of this OES effect in different reaction systems are still scarce for neutron-rich nuclei near the neutron drip line. By employing a third-order difference formula, the magnitudes of this OES in extensive experimental cross sections are systematically investigated for many neutron-rich nuclei with (N -Z ) from 1 to 23 over a broad range of atomic numbers (Z ≈3 -50 ). A comparison of these magnitude values extracted from fragment cross sections measured in different fragmentation and spallation reactions with a large variety of projectile-target combinations over a wide energy range reveals that the OES magnitude is almost independent of the projectile-target combinations and the projectile energy. The weighted average of these OES magnitudes derived from cross sections accurately measured in different reaction systems is adopted as the evaluation value of the OES magnitude. These evaluated OES magnitudes are recommended to be used in fragmentation and spallation models to improve their predictions for fragment cross sections.

X-ray spectral observations of clusters of galaxies undergoing merger events

NASA Astrophysics Data System (ADS)

Henriksen, Mark J.

1993-09-01

We have analyzed the HEAO 1 A2 observations of two clusters whose optical and X-ray isophotes are suggestive of merging subclusters, A119 and A754, and find evidence of nonisothermal X-ray emission from both clusters. The X-ray spectrum of both clusters, when fitted with a single isothermal model, shows residual soft X-ray emission. There is a statistically significant reduction in chi-squared (98 percent probability based on the F-test) when a second temperature component is added. If the asymmetric isophotes seen in the soft X-ray image are indicative of merging subclusters, then our analysis of the Einstein IPC spectra and Solid State Spectrometer observations of A754, which provide some spatial and spectral resolution, suggests that the two temperature components seen in the HEAO 1 A2 spectra are associated with gas trapped in the subcluster potential wells. The implied subcluster isothermal masses suggest that a more massive cluster is accreting a less massive companion in A754. The present observations cannot rule out the alternative possibility that the cooler gas is associated with the outer cluster atmosphere rather than individual subclusters, as appears to be the case for A119. Astro D observations will be necessary to distinguish between these two possibilities for both clusters.

Signal and noise level estimation for narrow spectral width returns observed by the Indian MST radar

NASA Astrophysics Data System (ADS)

Hooper, D. A.

1999-07-01

Use is made of five sets of multibeam observations of the lower atmosphere made by the Indian mesosphere-stratosphere-troposphere (MST) radar. Two aspects of signal processing which can lead to serious underestimates of the signal-to-noise ratio are considered. First, a comparison is made of the effects of different data weighting windows applied to the inphase and quadrature components of the radar return samples prior to Fourier transformation. The relatively high degree of spectral leakage associated with the rectangular and Hamming windows can give rise to overestimates of the noise levels by up to 28 dB for the strongest signals. Use of the Hanning window is found to be the most appropriate for these particular data. Second, a technique for removing systematic dc biases from the data in the time domain is compared with the more well-known practice of correction in the frequency domain. The latter technique, which is often used to remove the effects of ground clutter, is shown to be particularly inappropriate for the characteristically narrow spectral width signals observed by the Indian MST radar. For cases of near-zero Doppler shift it can remove up to 30 dB of signal information. The consequences of noise and signal level discrepancies for studies of refractivity structures are discussed. It is shown that neither problem has a significant effect on Doppler shift or spectral width estimates.

Characteristic fragment size distributions in dynamic fragmentation

NASA Astrophysics Data System (ADS)

Zhou, Fenghua; Molinari, Jean-François; Ramesh, K. T.

2006-06-01

The one-dimensional fragmentation of a dynamically expanding ring (Mott's problem) is studied numerically to obtain the fragment signatures under different strain rates. An empirical formula is proposed to calculate an average fragment size. Rayleigh distribution is found to describe the statistical properties of the fragment populations.

Fragmentation uncertainties in hadronic observables for top-quark mass measurements

NASA Astrophysics Data System (ADS)

Corcella, Gennaro; Franceschini, Roberto; Kim, Doojin

2018-04-01

We study the Monte Carlo uncertainties due to modeling of hadronization and showering in the extraction of the top-quark mass from observables that use exclusive hadronic final states in top decays, such as t →anything + J / ψ or t →anything + (B →charged tracks), where B is a B-hadron. To this end, we investigate the sensitivity of the top-quark mass, determined by means of a few observables already proposed in the literature as well as some new proposals, to the relevant parameters of event generators, such as HERWIG 6 and PYTHIA 8. We find that constraining those parameters at O (1%- 10%) is required to avoid a Monte Carlo uncertainty on mt greater than 500 MeV. For the sake of achieving the needed accuracy on such parameters, we examine the sensitivity of the top-quark mass measured from spectral features, such as peaks, endpoints and distributions of EB, mBℓ, and some mT2-like variables. We find that restricting oneself to regions sufficiently close to the endpoints enables one to substantially decrease the dependence on the Monte Carlo parameters, but at the price of inflating significantly the statistical uncertainties. To ameliorate this situation we study how well the data on top-quark production and decay at the LHC can be utilized to constrain the showering and hadronization variables. We find that a global exploration of several calibration observables, sensitive to the Monte Carlo parameters but very mildly to mt, can offer useful constraints on the parameters, as long as such quantities are measured with a 1% precision.

The Spectral Shift Function and Spectral Flow

NASA Astrophysics Data System (ADS)

Azamov, N. A.; Carey, A. L.; Sukochev, F. A.

2007-11-01

At the 1974 International Congress, I. M. Singer proposed that eta invariants and hence spectral flow should be thought of as the integral of a one form. In the intervening years this idea has lead to many interesting developments in the study of both eta invariants and spectral flow. Using ideas of [24] Singer’s proposal was brought to an advanced level in [16] where a very general formula for spectral flow as the integral of a one form was produced in the framework of noncommutative geometry. This formula can be used for computing spectral flow in a general semifinite von Neumann algebra as described and reviewed in [5]. In the present paper we take the analytic approach to spectral flow much further by giving a large family of formulae for spectral flow between a pair of unbounded self-adjoint operators D and D + V with D having compact resolvent belonging to a general semifinite von Neumann algebra {mathcal{N}} and the perturbation V in {mathcal{N}} . In noncommutative geometry terms we remove summability hypotheses. This level of generality is made possible by introducing a new idea from [3]. There it was observed that M. G. Krein’s spectral shift function (in certain restricted cases with V trace class) computes spectral flow. The present paper extends Krein’s theory to the setting of semifinite spectral triples where D has compact resolvent belonging to {mathcal{N}} and V is any bounded self-adjoint operator in {mathcal{N}} . We give a definition of the spectral shift function under these hypotheses and show that it computes spectral flow. This is made possible by the understanding discovered in the present paper of the interplay between spectral shift function theory and the analytic theory of spectral flow. It is this interplay that enables us to take Singer’s idea much further to create a large class of one forms whose integrals calculate spectral flow. These advances depend critically on a new approach to the calculus of functions of non

Spectral Irradiance Calibration in the Infrared. Part 4; 1.2 - 35 microns Spectra of Six Standard Stars

NASA Technical Reports Server (NTRS)

Cohen, Martin; Witteborn, Fred C.; Walker, Russell G.; Bregman, Jesse D.; Wooden, Diane H.

1995-01-01

We present five new absolutely calibrated continuous stellar spectra from 1.2 to 35 microns, constructed as far as possible from actual observed spectral fragments taken from the ground, the Kuiper Airborne Observatory (KAO), and the IRAS Low Resolution Spectrometer (LRS). These stars- beta Peg, alpha Boo, beta And, beta Gem, and alpha Hya-augment our already created complete absolutely calibrated spectrum for alpha Tau. All these spectra have a common calibration pedigree. The wavelength coverage is ideal for calibration of many existing and proposed ground-based, airborne, and satellite sensors.

Spectral Irradiance Calibration in the Infrared. Part 4; 1.2-35 micrometer Spectra of Six Standard Stars

NASA Technical Reports Server (NTRS)

Cohen, Martin; Witteborn, Fred C.; Walker, Russell, G.; Bregman, Jesse D.; Wooden, Diane H.

1995-01-01

Five new absolutely calibrated continuous stellar spectra from 1.2 to 35 microns are presented. The spectra were constructed as far as possible from actual observed spectral fragments taken from the ground, the Kuiper Airborne Observatory (KAO), and the IRAS Low Resolution Spectrometer (LRS). These stars (beta Peg, alpha Boo, beta And, beta Gem, and alpha Hya) augment the author's already created complete absolutely calibrated spectrum for alpha Tau. All these spectra have a common calibration pedigree. The wavelength coverage is ideal for calibration of many existing and proposed ground-based, airborne, and satellite sensors.

Multi-spectral window radiance observations of Cirrus from satellite and aircraft, November 2, 1986 Project FIRE

NASA Technical Reports Server (NTRS)

Smith, William L.; Revercomb, H. E.; Howell, H. B.; Lin, M.-X.

1990-01-01

High resolution infrared radiance spectra achieved from the NASA ER2 airborne HIS experiment are used to analyze the spectral emissivity properties of cirrus clouds within the 8 to 12 micron atmospheric window region. Observations show that the cirrus emissivity generally decreases with increasing wavenumber (i.e., decreasing wavelength) within this band. A very abrupt decrease in emissivity (increase in brightness temperature) exists between 930/cm (10.8 microns) and 1000/cm (10.0 microns), the magnitude of the change being associated with the cirrus optical thickness as observed by lidar. The HIS observations are consistent with theoretical calculations of the spectral absorption coefficient for ice. The HIS observations imply that cirrus clouds can be detected unambiguously from the difference in brightness temperatures observed within the 8.2 and 11.0 micron window regions of the HIRS sounding radiometer flying on the operational NOAA satellites. This ability is demonstrated using simultaneous 25 km resolution HIRS observations and 1 km resolution AVHRR imagery achieved from the NOAA-9 satellite. Finally, the cirrus cloud location estimates combined with the 6.7 micron channel moisture imagery portray the boundaries of the ice/vapor phase of the upper troposphere moisture. This phase distinction is crucial for infrared radiative transfer considerations for weather and climate models, since upper tropospheric water vapor has little effect on the Earth's outgoing radiation whereas cirrus clouds have a very large attenuating effect.

Fragmentation in the branching coral Acropora palmata (Lamarck): growth, survivorship, and reproduction of colonies and fragments.

PubMed

Lirman

2000-08-23

Acropora palmata, a branching coral abundant on shallow reef environments throughout the Caribbean, is susceptible to physical disturbance caused by storms. Accordingly, the survivorship and propagation of this species are tied to its capability to recover after fragmentation. Fragments of A. palmata comprised 40% of ramets within populations that had experienced recent storms. While the survivorship of A. palmata fragments was not directly related to the size of fragments, removal of fragments from areas where they settled was influenced by size. Survivorship of fragments was also affected by type of substratum; the greatest mortality (58% loss within the first month) was observed on sand, whereas fragments placed on top of live colonies of A. palmata fused to the underlying tissue and did not experience any losses. Fragments created by Hurricane Andrew on a Florida reef in August 1992 began developing new growth (proto-branches) 7 months after the storm. The number of proto-branches on fragments was dependent on size, but growth was not affected by the size of fragments. Growth-rates of proto-branches increased exponentially with time (1.7 cm year(-1) for 1993-1994, 2.7 cm year(-1) for 1994-1995, 4.2 cm year(-1) for 1995-1996, and 6.5 cm year(-1) for 1996-1997), taking over 4 years for proto-branches to achieve rates comparable to those of adult colonies on the same reef (6.9 cm year(-1)). In addition to the initial mortality and reduced growth-rates, fragmentation resulted in a loss of reproductive potential. Neither colonies that experienced severe fragmentation nor fragments contained gametes until 4 years after the initial damage. Although A. palmata may survive periodic fragmentation, the long-term effects of this process will depend ultimately on the balance between the benefits and costs of this process.

Spectral properties of 441 radio pulsars

NASA Astrophysics Data System (ADS)

Jankowski, F.; van Straten, W.; Keane, E. F.; Bailes, M.; Barr, E. D.; Johnston, S.; Kerr, M.

2018-02-01

We present a study of the spectral properties of 441 pulsars observed with the Parkes radio telescope near the centre frequencies of 728, 1382 and 3100 MHz. The observations at 728 and 3100 MHz were conducted simultaneously using the dual-band 10-50 cm receiver. These high-sensitivity, multifrequency observations provide a systematic and uniform sample of pulsar flux densities. We combine our measurements with spectral data from the literature in order to derive the spectral properties of these pulsars. Using techniques from robust regression and information theory, we classify the observed spectra in an objective, robust and unbiased way into five morphological classes: simple or broken power law, power law with either low- or high-frequency cut-off and log-parabolic spectrum. While about 79 per cent of the pulsars that could be classified have simple power-law spectra, we find significant deviations in 73 pulsars, 35 of which have curved spectra, 25 with a spectral break and 10 with a low-frequency turn-over. We identify 11 gigahertz-peaked spectrum (GPS) pulsars, with 3 newly identified in this work and 8 confirmations of known GPS pulsars; 3 others show tentative evidence of GPS, but require further low-frequency measurements to support this classification. The weighted mean spectral index of all pulsars with simple power-law spectra is -1.60 ± 0.03. The observed spectral indices are well described by a shifted log-normal distribution. The strongest correlations of spectral index are with spin-down luminosity, magnetic field at the light-cylinder and spin-down rate. We also investigate the physical origin of the observed spectral features and determine emission altitudes for three pulsars.

Enhanced 630nm equatorial airglow emission observed by Limb Viewing Hyper Spectral Imager (LiVHySI) onboard YOUTHSAT-1

NASA Astrophysics Data System (ADS)

Bisht, R. S.; Thapa, N.; Babu, P. N.

2016-04-01

The Earth's airglow layer, when observed in the limb view mode, appears to be a double layer. LiVHySI onboard YOUTHSAT (inclination 98.730, apogee 817 km, launched by Indian Space Research Organization in April, 2011) is an Earth's limb viewing camera measuring airglow emissions in the spectral window of 550-900 nm. Total altitude coverage is about 500 km with command selectable lowest altitude. During few of the orbits we have observed the double layer structure and obtained absolute spectral intensity and altitude profile for 630 nm airglow emission. Our night time observations of upper atmosphere above dip equator carried out on 3rd May, 2011 show a prominent 630 nm double layer structure. The upper airglow layer consists of the 630 nm atomic oxygen O(1D) emission line and lower layer consists of OH(9-3) meinel band emission at 630 nm. The volume emission rate as a function of altitude is simulated for our observational epoch and the modeled limb intensity distribution is compared with the observations. The observations are in good agreement with the simulated intensity distribution.

Angular distributions and mechanisms of fragmentation by relativistic heavy ions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stoenner, R.W.; Haustein, P.E.; Cumming, J.B.

1984-07-23

Angular distributions of massive fragments from relativistic heavy-ion interactions are reported. Sideward peaking is observed for the light fragment /sup 37/Ar, from 25-GeV /sup 12/C+Au, while the distribution for /sup 127/Xe is strongly forward peaked. Conflicts of these observations and other existing data with predictions of models for the fragmentation process are discussed.

Peptide Fragmentation Induced by Radicals at Atmospheric Pressure

PubMed Central

Vilkov, Andrey N.; Laiko, Victor V.; Doroshenko, Vladimir M.

2009-01-01

A novel ion dissociation technique, which is capable of providing an efficient fragmentation of peptides at essentially atmospheric pressure conditions, is developed. The fragmentation patterns observed often contain c-type fragments that are specific to ECD/ETD, along with the y-/b- fragments that are specific to CAD. In the presented experimental setup, ion fragmentation takes place within a flow reactor located in the atmospheric pressure region between the ion source and the mass spectrometer. According to a proposed mechanism, the fragmentation results from the interaction of ESI-generated analyte ions with the gas-phase radical species produced by a corona discharge source. PMID:19034885

Spectral observations of the extreme ultraviolet background.

PubMed

Labov, S E; Bowyer, S

1991-04-20

A grazing incidence spectrometer was designed to measure the diffuse extreme ultraviolet background. It was flown on a sounding rocket, and data were obtained on the diffuse background between 80 and 650 angstroms. These are the first spectral measurements of this background below 520 angstroms. Several emission features were detected, including interplanetary He I 584 angstroms emission and geocoronal He II 304 angstroms emission. Other features observed may originate in a hot ionized interstellar gas, but if this interpretation is correct, gas at several different temperatures is present. The strongest of these features is consistent with O V emission at 630 angstroms. This emission, when combined with upper limits for other lines, restricts the temperature of this component to 5.5 < log T < 5.7, in agreement with temperatures derived from O VI absorption studies. A power-law distribution of temperatures is consistent with this feature only if the power-law coefficient is negative, as is predicted for saturated evaporation of clouds in a hot medium. In this case, the O VI absorption data confine the filling factor of the emission of f < or = 4% and the pressure to more than 3.7 x 10(4) cm-3 K, substantially above ambient interstellar pressure. Such a pressure enhancement has been predicted for clouds undergoing saturated evaporation. Alternatively, if the O V emission covers a considerable fraction of the sky, it would be a major source of ionization. A feature centered at about 99 angstroms is well fitted by a cluster of Fe XVIII and Fe XIX lines from gas at log T = 6.6-6.8. These results are consistent with previous soft X-ray observations with low-resolution detectors. A feature found near 178 angstroms is consistent with Fe X and Fe XI emission from gas at log T = 6; this result is consistent with results from experiments employing broad-band soft X-ray detectors.

Mass spectral analysis of long chain alkyl aromatic compounds synthesized from alpha-olefin alkylation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cheng, M.T.; Hudson, J.D.

1994-12-31

Long chain alkyl aromatic compounds are important petrochemicals with many applications. They are generally synthesized by alkylating the corresponding aromatic nucleus. In this report, the authors will describe the mass spectral fragmentation of alkylphenols and alkylsalicylates.

Fragment-based lead generation: identification of seed fragments by a highly efficient fragment screening technology

NASA Astrophysics Data System (ADS)

Neumann, Lars; Ritscher, Allegra; Müller, Gerhard; Hafenbradl, Doris

2009-08-01

For the detection of the precise and unambiguous binding of fragments to a specific binding site on the target protein, we have developed a novel reporter displacement binding assay technology. The application of this technology for the fragment screening as well as the fragment evolution process with a specific modelling based design strategy is demonstrated for inhibitors of the protein kinase p38alpha. In a fragment screening approach seed fragments were identified which were then used to build compounds from the deep-pocket towards the hinge binding area of the protein kinase p38alpha based on a modelling approach. BIRB796 was used as a blueprint for the alignment of the fragments. The fragment evolution of these deep-pocket binding fragments towards the fully optimized inhibitor BIRB796 included the modulation of the residence time as well as the affinity. The goal of our study was to evaluate the robustness and efficiency of our novel fragment screening technology at high fragment concentrations, compare the screening data with biochemical activity data and to demonstrate the evolution of the hit fragments with fast kinetics, into slow kinetic inhibitors in an in silico approach.

Ultra-High Spectral Resolution Observations of Fragmentation in Dark Cloud Cores

NASA Technical Reports Server (NTRS)

Velusamy, T.; Langer, W.; Kuiper, T; Levin, S.; Olsen, E.

1993-01-01

This paper presents new evidence of the fragmentary structure of dense cores in dark clouds using the high resolution spectra of the carbon chain molecule CCS transition (J subscript N = 2 subscript 1 - 1 subscript o) at 22.344033 GHz with 0.008 km s superscript -1 resolution.

Driven fragmentation of granular gases.

PubMed

Cruz Hidalgo, Raúl; Pagonabarraga, Ignacio

2008-06-01

The dynamics of homogeneously heated granular gases which fragment due to particle collisions is analyzed. We introduce a kinetic model which accounts for correlations induced at the grain collisions and analyze both the kinetics and relevant distribution functions these systems develop. The work combines analytical and numerical studies based on direct simulation Monte Carlo calculations. A broad family of fragmentation probabilities is considered, and its implications for the system kinetics are discussed. We show that generically these driven materials evolve asymptotically into a dynamical scaling regime. If the fragmentation probability tends to a constant, the grain number diverges at a finite time, leading to a shattering singularity. If the fragmentation probability vanishes, then the number of grains grows monotonously as a power law. We consider different homogeneous thermostats and show that the kinetics of these systems depends weakly on both the grain inelasticity and driving. We observe that fragmentation plays a relevant role in the shape of the velocity distribution of the particles. When the fragmentation is driven by local stochastic events, the long velocity tail is essentially exponential independently of the heating frequency and the breaking rule. However, for a Lowe-Andersen thermostat, numerical evidence strongly supports the conjecture that the scaled velocity distribution follows a generalized exponential behavior f(c) approximately exp(-cn) , with n approximately 1.2 , regarding less the fragmentation mechanisms.

Planck 2013 results. IX. HFI spectral response

NASA Astrophysics Data System (ADS)

Planck Collaboration; Ade, P. A. R.; Aghanim, N.; Armitage-Caplan, C.; Arnaud, M.; Ashdown, M.; Atrio-Barandela, F.; Aumont, J.; Baccigalupi, C.; Banday, A. J.; Barreiro, R. B.; Battaner, E.; Benabed, K.; Benoît, A.; Benoit-Lévy, A.; Bernard, J.-P.; Bersanelli, M.; Bielewicz, P.; Bobin, J.; Bock, J. J.; Bond, J. R.; Borrill, J.; Bouchet, F. R.; Boulanger, F.; Bridges, M.; Bucher, M.; Burigana, C.; Cardoso, J.-F.; Catalano, A.; Challinor, A.; Chamballu, A.; Chary, R.-R.; Chen, X.; Chiang, H. C.; Chiang, L.-Y.; Christensen, P. R.; Church, S.; Clements, D. L.; Colombi, S.; Colombo, L. P. L.; Combet, C.; Comis, B.; Couchot, F.; Coulais, A.; Crill, B. P.; Curto, A.; Cuttaia, F.; Danese, L.; Davies, R. D.; de Bernardis, P.; de Rosa, A.; de Zotti, G.; Delabrouille, J.; Delouis, J.-M.; Désert, F.-X.; Dickinson, C.; Diego, J. M.; Dole, H.; Donzelli, S.; Doré, O.; Douspis, M.; Dupac, X.; Efstathiou, G.; Enßlin, T. A.; Eriksen, H. K.; Falgarone, E.; Finelli, F.; Forni, O.; Frailis, M.; Franceschi, E.; Galeotta, S.; Ganga, K.; Giard, M.; Giraud-Héraud, Y.; González-Nuevo, J.; Górski, K. M.; Gratton, S.; Gregorio, A.; Gruppuso, A.; Hansen, F. K.; Hanson, D.; Harrison, D.; Henrot-Versillé, S.; Hernández-Monteagudo, C.; Herranz, D.; Hildebrandt, S. R.; Hivon, E.; Hobson, M.; Holmes, W. A.; Hornstrup, A.; Hovest, W.; Huffenberger, K. M.; Hurier, G.; Jaffe, A. H.; Jaffe, T. R.; Jones, W. C.; Juvela, M.; Keihänen, E.; Keskitalo, R.; Kisner, T. S.; Kneissl, R.; Knoche, J.; Knox, L.; Kunz, M.; Kurki-Suonio, H.; Lagache, G.; Lamarre, J.-M.; Lasenby, A.; Laureijs, R. J.; Lawrence, C. R.; Leahy, J. P.; Leonardi, R.; Leroy, C.; Lesgourgues, J.; Liguori, M.; Lilje, P. B.; Linden-Vørnle, M.; López-Caniego, M.; Lubin, P. M.; Macías-Pérez, J. F.; Maffei, B.; Mandolesi, N.; Maris, M.; Marshall, D. J.; Martin, P. G.; Martínez-González, E.; Masi, S.; Massardi, M.; Matarrese, S.; Matthai, F.; Mazzotta, P.; McGehee, P.; Melchiorri, A.; Mendes, L.; Mennella, A.; Migliaccio, M.; Mitra, S.; Miville-Deschênes, M.-A.; Moneti, A.; Montier, L.; Morgante, G.; Mortlock, D.; Munshi, D.; Murphy, J. A.; Naselsky, P.; Nati, F.; Natoli, P.; Netterfield, C. B.; Nørgaard-Nielsen, H. U.; North, C.; Noviello, F.; Novikov, D.; Novikov, I.; Osborne, S.; Oxborrow, C. A.; Paci, F.; Pagano, L.; Pajot, F.; Paoletti, D.; Pasian, F.; Patanchon, G.; Perdereau, O.; Perotto, L.; Perrotta, F.; Piacentini, F.; Piat, M.; Pierpaoli, E.; Pietrobon, D.; Plaszczynski, S.; Pointecouteau, E.; Polenta, G.; Ponthieu, N.; Popa, L.; Poutanen, T.; Pratt, G. W.; Prézeau, G.; Prunet, S.; Puget, J.-L.; Rachen, J. P.; Reinecke, M.; Remazeilles, M.; Renault, C.; Ricciardi, S.; Riller, T.; Ristorcelli, I.; Rocha, G.; Rosset, C.; Roudier, G.; Rusholme, B.; Santos, D.; Savini, G.; Scott, D.; Shellard, E. P. S.; Spencer, L. D.; Starck, J.-L.; Stolyarov, V.; Stompor, R.; Sudiwala, R.; Sureau, F.; Sutton, D.; Suur-Uski, A.-S.; Sygnet, J.-F.; Tauber, J. A.; Tavagnacco, D.; Terenzi, L.; Tomasi, M.; Tristram, M.; Tucci, M.; Umana, G.; Valenziano, L.; Valiviita, J.; Van Tent, B.; Vielva, P.; Villa, F.; Vittorio, N.; Wade, L. A.; Wandelt, B. D.; Yvon, D.; Zacchei, A.; Zonca, A.

2014-11-01

The Planck High Frequency Instrument (HFI) spectral response was determined through a series of ground based tests conducted with the HFI focal plane in a cryogenic environment prior to launch. The main goal of the spectral transmission tests was to measure the relative spectral response (includingthe level of out-of-band signal rejection) of all HFI detectors to a known source of electromagnetic radiation individually. This was determined by measuring the interferometric output of a continuously scanned Fourier transform spectrometer with all HFI detectors. As there is no on-board spectrometer within HFI, the ground-based spectral response experiments provide the definitive data set for the relative spectral calibration of the HFI. Knowledge of the relative variations in the spectral response between HFI detectors allows for a more thorough analysis of the HFI data. The spectral response of the HFI is used in Planck data analysis and component separation, this includes extraction of CO emission observed within Planck bands, dust emission, Sunyaev-Zeldovich sources, and intensity to polarization leakage. The HFI spectral response data have also been used to provide unit conversion and colour correction analysis tools. While previous papers describe the pre-flight experiments conducted on the Planck HFI, this paper focusses on the analysis of the pre-flight spectral response measurements and the derivation of data products, e.g. band-average spectra, unit conversion coefficients, and colour correction coefficients, all with related uncertainties. Verifications of the HFI spectral response data are provided through comparisons with photometric HFI flight data. This validation includes use of HFI zodiacal emission observations to demonstrate out-of-band spectral signal rejection better than 108. The accuracy of the HFI relative spectral response data is verified through comparison with complementary flight-data based unit conversion coefficients and colour correction

Fragmentation of interstellar clouds and star formation

NASA Technical Reports Server (NTRS)

Silk, J.

1982-01-01

The principal issues are addressed: the fragmentation of molecular clouds into units of stellar mass and the impact of star formation on molecular clouds. The observational evidence for fragmentation is summarized, and the gravitational instability described of a uniform spherical cloud collapsing from rest. The implications are considered of a finite pressure for the minimum fragment mass that is attainable in opacity-limited fragmentation. The role of magnetic fields is discussed in resolving the angular momentum problem and in making the collapse anisotropic, with notable consequences for fragmentation theory. Interactions between fragments are described, with emphasis on the effect of protostellar winds on the ambient cloud matter and on inhibiting further star formation. Such interactions are likely to have profound consequences for regulating the rate of star formation and on the energetics and dynamics of molecular clouds.

Advancement of magma fragmentation by inhomogeneous bubble distribution.

PubMed

Kameda, M; Ichihara, M; Maruyama, S; Kurokawa, N; Aoki, Y; Okumura, S; Uesugi, K

2017-12-01

Decompression times reported in previous studies suggest that thoroughly brittle fragmentation is unlikely in actual explosive volcanic eruptions. What occurs in practice is brittle-like fragmentation, which is defined as the solid-like fracture of a material whose bulk rheological properties are close to those of a fluid. Through laboratory experiments and numerical simulation, the link between the inhomogeneous structure of bubbles and the development of cracks that may lead to brittle-like fragmentation was clearly demonstrated here. A rapid decompression test was conducted to simulate the fragmentation of a specimen whose pore morphology was revealed by X-ray microtomography. The dynamic response during decompression was observed by high-speed photography. Large variation was observed in the responses of the specimens even among specimens with equal bulk rheological properties. The stress fields of the specimens under decompression computed by finite element analysis shows that the presence of satellite bubbles beneath a large bubble induced the stress concentration. On the basis of the obtained results, a new mechanism for brittle-like fragmentation is proposed. In the proposed scenario, the second nucleation of bubbles near the fragmentation surface is an essential process for the advancement of fragmentation in an upward magma flow in a volcanic conduit.

Dual Fragment Impact of PBX Charges

NASA Astrophysics Data System (ADS)

Haskins, Peter; Briggs, Richard; Leeming, David; White, Nathan; Cheese, Philip; DE&S MoD UK Team; Ordnance Test Solutions Ltd Team

2017-06-01

Fragment impact can pose a significant hazard to many systems containing explosives or propellants. Testing for this threat is most commonly carried out using a single fragment. However, it can be argued that an initial fragment strike (or strikes) could sensitise the energetic material to subsequent impacts, which may then lead to a more violent reaction than would have been predicted based upon single fragment studies. To explore this potential hazard we have developed the capability to launch 2 fragments from the same gun at a range of velocities, and achieve impacts on an acceptor charge with good control over the spatial and temporal separation of the strikes. In this paper we will describe in detail the experimental techniques we have used, both to achieve the dual fragment launch and observe the acceptor charge response. In addition, we will describe the results obtained against PBX filled explosive targets; discuss the mechanisms controlling the target response and their significance for vulnerability assessment. Results of these tests have clearly indicated the potential for detonation upon the second strike, at velocities well below those needed for shock initiation by a single fragment.

Results of Spectral Corona Observations in Solar Activity Cycles 17-24

NASA Astrophysics Data System (ADS)

Aliev, A. Kh.; Guseva, S. A.; Tlatov, A. G.

2017-12-01

The results of the work of the global observation network are considered, and a comparative analysis of the data of various coronal observatories is performed. The coronal activity index has been reconstructed for the period 1939-2016 based on the data of various observatories in Kislovodsk system. For this purpose, the corona daily intensity maps from the Sacramento Peak and Lomnický Štít observatories according to the Solar-Geophysical Data journal have been digitized; they supplement the data of other observatories. The homogeneity and continuity of the corona observations at the Kislovodsk station, including activity cycle 24, is confirmed. Unfortunately, the only observatory at present that continues observation of the spectral corona in Fe XIV 5303 Å and Fe XIV 6374 Å lines is the Kislovodsk astronomical station Mountain Astronomical Station (MAS) of the Central Astronomical Observatory, Russian Academy of Sciences (Pulkovo). The data on the combined corona in 5303 Å line are analyzed. It is shown that there is a high correlation of the intensity index of green corona with solar radiation measurements in the vacuum UV region. Data on the beginning of the new 25th activity cycle in the corona at high latitudes are presented.

Impacts of fragmented accretion streams onto classical T Tauri stars: UV and X-ray emission lines

NASA Astrophysics Data System (ADS)

Colombo, S.; Orlando, S.; Peres, G.; Argiroffi, C.; Reale, F.

2016-10-01

Context. The accretion process in classical T Tauri stars (CTTSs) can be studied through the analysis of some UV and X-ray emission lines which trace hot gas flows and act as diagnostics of the post-shock downfalling plasma. In the UV-band, where higher spectral resolution is available, these lines are characterized by rather complex profiles whose origin is still not clear. Aims: We investigate the origin of UV and X-ray emission at impact regions of density structured (fragmented) accretion streams. We study if and how the stream fragmentation and the resulting structure of the post-shock region determine the observed profiles of UV and X-ray emission lines. Methods: We modeled the impact of an accretion stream consisting of a series of dense blobs onto the chromosphere of a CTTS through two-dimensional (2D) magnetohydrodynamic (MHD) simulations. We explored different levels of stream fragmentation and accretion rates. From the model results, we synthesize C IV (1550 Å) and O VIII (18.97 Å) line profiles. Results: The impacts of accreting blobs onto the stellar chromosphere produce reverse shocks propagating through the blobs and shocked upflows. These upflows, in turn, hit and shock the subsequent downfalling fragments. As a result, several plasma components differing for the downfalling velocity, density, and temperature are present altoghether. The profiles of C IV doublet are characterized by two main components: one narrow and redshifted to speed ≈ 50 km s-1 and the other broader and consisting of subcomponents with redshift to speed in the range 200-400 km s-1. The profiles of O VIII lines appear more symmetric than C IV and are redshifted to speed ≈ 150 km s-1. Conclusions: Our model predicts profiles of C IV line remarkably similar to those observed and explains their origin in a natural way as due to stream fragmentation. Movies are available at http://www.aanda.org

Global patterns of tropical forest fragmentation

NASA Astrophysics Data System (ADS)

Taubert, Franziska; Fischer, Rico; Groeneveld, Jürgen; Lehmann, Sebastian; Müller, Michael S.; Rödig, Edna; Wiegand, Thorsten; Huth, Andreas

2018-02-01

Remote sensing enables the quantification of tropical deforestation with high spatial resolution. This in-depth mapping has led to substantial advances in the analysis of continent-wide fragmentation of tropical forests. Here we identified approximately 130 million forest fragments in three continents that show surprisingly similar power-law size and perimeter distributions as well as fractal dimensions. Power-law distributions have been observed in many natural phenomena such as wildfires, landslides and earthquakes. The principles of percolation theory provide one explanation for the observed patterns, and suggest that forest fragmentation is close to the critical point of percolation; simulation modelling also supports this hypothesis. The observed patterns emerge not only from random deforestation, which can be described by percolation theory, but also from a wide range of deforestation and forest-recovery regimes. Our models predict that additional forest loss will result in a large increase in the total number of forest fragments—at maximum by a factor of 33 over 50 years—as well as a decrease in their size, and that these consequences could be partly mitigated by reforestation and forest protection.

Fragmentation characteristics of hydroxycinnamic acids in ESI-MSn by density functional theory.

PubMed

Yin, Zhi-Hui; Sun, Chang-Hai; Fang, Hong-Zhuang

2017-07-01

This work aims to analyze the electrospray ionization multistage mass spectrometry (ESI-MS n ) fragmentation characteristics of hydroxycinnamic acids (HCAs) in negative ion mode. The geometric parameters, energies, natural bond orbitals and frontier orbitals of fragments were calculated by density functional theory (DFT) to investigate mass spectral fragmentation mechanisms. The results showed that proton transfer always occurred during fragmentation of HCAs; their quasi-molecular ions ([M - H] - ) existed in more than one form and were mainly with the lowest energy. The fragmentation characteristics included the followings: (1) according to the different substitution position of phenolic hydroxyl group, the ring contraction reaction by CO elimination from benzene was in an increasingly difficult order: m-phenolic hydroxyl > p-phenolic hydroxyl > o-phenolic hydroxyl; and (2) ortho effect always occurred in o-dihydroxycinnamic acids (o-diHCAs), i.e. one phenolic hydroxyl group offered H + , which combined with the other one to lose H 2 O. In addition, there was a nucleophilic reaction during ring contraction in diHCAs that oxygen atom attacked the carbon atom binding with the other phenolic hydroxyl to lose CO 2 . The fragmentation characteristics and mechanism of HCAs could be used for analysis and identification of such compounds quickly and effectively, and as reference for structural analogues by ESI-MS. Copyright © 2017 John Wiley & Sons, Ltd. Copyright © 2017 John Wiley & Sons, Ltd.

SHIELD: EVLA HI Spectral Line Observations of Low-mass Dwarfs

NASA Astrophysics Data System (ADS)

Miazzo, Masao; Ruvolo, Elizabeth; Cannon, John M.; McNichols, Andrew; Teich, Yaron; Adams, Elizabeth A.; Giovanelli, Riccardo; Haynes, Martha P.; McQuinn, Kristen B.; Salzer, John Joseph; Skillman, Evan D.; Dolphin, Andrew E.; Elson, Edward C.; Haurberg, Nathalie C.; Huang, Shan; Janowiecki, Steven; Jozsa, Gyula; Leisman, Luke; Ott, Juergen; Papastergis, Emmanouil; Rhode, Katherine L.; Saintonge, Amelie; Van Sistine, Angela; Warren, Steven R.

2017-01-01

The “Survey of HI in Extremely Low-mass Dwarfs” (SHIELD) is a multiwavelength study of local volume low-mass galaxies. Using the now-complete Arecibo Legacy Fast ALFA (ALFALFA) source catalog, 82 systems are identified that meet distance, line width, and HI flux criteria for being gas-rich, low-mass galaxies. These systems harbor neutral gas reservoirs smaller than 3x10^7 M_sun, thus populating the faint end of the HI mass function with statistical confidence for the first time. Here we present new Karl G. Jansky Very Large Array D-configuration HI spectral line observations of 32 previously unobserved galaxies. These low angular resolution (~40" beam) images localize the HI gas; with a few exceptions, the HI gas is co-spatial with the optical centers of the galaxies. These images provide the first glimpse of the neutral interstellar medium in these systems.Support for this work was provided by NSF grant 1211683 to JMC at Macalester College.

Observing the Fast X-ray Spectral Variability of NLS1 1H1934-063 with XMM-Newton and NuSTAR

NASA Astrophysics Data System (ADS)

Frederick, Sara; Kara, Erin; Reynolds, Christopher S.

2017-08-01

The most variable active galactic nuclei (AGN), taken together, are a compelling wellspring of interesting accretion-related phenomena. They can exhibit dramatic variability in the X-ray band on a range of timescales down to a few minutes. We present the exemplifying case study of 1H1934-063 (z = 0.0102), a narrow-line Seyfert I (NLS1) that is among the most variable AGN ever observed with XMM-Newton. We present spectral and temporal analyses of a concurrent XMM-Newton and NuSTAR observation taken in 2015 and lasting 120 ks, during which the source exhibited a steep (factor of 1.5) plummet and subsequent full recovery of flux that we explore in detail here. Combined spectral and timing results point to a dramatic change in the continuum on timescales as short as a few ks. Similar to other highly variable Seyfert 1s, this AGN is quite X-ray bright and displays strong reflection spectral features. We find agreement with a change in the continuum, and we rule out absorption as the cause for this dramatic variability observed even at NuSTAR energies. We compare detailed time-resolved spectral fitting with Fourier-based timing analysis in order to constrain coronal geometry, dynamics, and emission/absorption processes dictating the nature of this variability. We also announce the discovery of a Fe-K time lag between the hard X-ray continuum emission (1 - 4 keV) and its relativistically-blurred reflection off the inner accretion flow (0.3 - 1 keV).

Incorporation of the statistical multi-fragmentation model in PHITS and its application for simulation of fragmentation by heavy ions and protons

NASA Astrophysics Data System (ADS)

Ogawa, Tatsuhiko; Sato, Tatsuhiko; Hashimoto, Shintaro; Niita, Koji

2014-06-01

The fragmentation reactions of relativistic-energy nucleus-nucleus and proton-nucleus collisions were simulated using the Statistical Multi-fragmentation Model (SMM) incorporated with the Particle and Heavy Ion Transport code System (PHITS). The comparisons of calculated cross-sections with literature data showed that PHITS-SMM predicts the fragmentation cross-sections of heavy nuclei up to two orders of magnitude more accurately than PHITS for heavy-ion-induced reactions. For proton-induced reactions, noticeable improvements are observed for interactions of the heavy target with protons at an energy greater than 1 GeV. Therefore, consideration for multi-fragmentation reactions is necessary for the accurate simulation of energetic fragmentation reactions of heavy nuclei.

Virtual fragment preparation for computational fragment-based drug design.

PubMed

Ludington, Jennifer L

2015-01-01

Fragment-based drug design (FBDD) has become an important component of the drug discovery process. The use of fragments can accelerate both the search for a hit molecule and the development of that hit into a lead molecule for clinical testing. In addition to experimental methodologies for FBDD such as NMR and X-ray Crystallography screens, computational techniques are playing an increasingly important role. The success of the computational simulations is due in large part to how the database of virtual fragments is prepared. In order to prepare the fragments appropriately it is necessary to understand how FBDD differs from other approaches and the issues inherent in building up molecules from smaller fragment pieces. The ultimate goal of these calculations is to link two or more simulated fragments into a molecule that has an experimental binding affinity consistent with the additive predicted binding affinities of the virtual fragments. Computationally predicting binding affinities is a complex process, with many opportunities for introducing error. Therefore, care should be taken with the fragment preparation procedure to avoid introducing additional inaccuracies.This chapter is focused on the preparation process used to create a virtual fragment database. Several key issues of fragment preparation which affect the accuracy of binding affinity predictions are discussed. The first issue is the selection of the two-dimensional atomic structure of the virtual fragment. Although the particular usage of the fragment can affect this choice (i.e., whether the fragment will be used for calibration, binding site characterization, hit identification, or lead optimization), general factors such as synthetic accessibility, size, and flexibility are major considerations in selecting the 2D structure. Other aspects of preparing the virtual fragments for simulation are the generation of three-dimensional conformations and the assignment of the associated atomic point charges.

New results of the spectral observations of CP stars

NASA Astrophysics Data System (ADS)

Polosukhina, N. S.; Shavrina, A. V.; Drake, N. A.; Kudryavtsev, D. O.; Smirnova, M. A.

2010-04-01

The lithium problem in Ap-CP stars has been, for a long time, a subject of debate. Individual characteristics of CP stars, such as high abundance of the rare-earth elements presence of magnetic fields, complicate structure of the surface distribution of chemical elements, rapid oscillations of some CP-stars, make the detection of the lithium lines and the determination of the lithium abundance, a difficult task. During the International Meeting in Slovakia in 1996, the lithium problem in Ap-CP stars was discussed. The results of the Li study carried out in CrAO Polosukhina (1973-1976), the works of Hack & Faraggiana (1963), Wallerstein & Hack (1964), Faraggiana et al. (1992-1996) formed the basis of the International project ‘Lithium in the cool CP-stars with magnetic fields’. The main goal of the project was, using systematical observations of Ap-CP stars with phase rotation in the spectral regions of the resonance doublet Li I 6708 Å and subordinate 6104 Å lithium lines with different telescopes, to create a database, which will permit to explain the physical origin of anomalous Li abundance in the atmospheres of these stars.

Observation of the spectrally invariant properties of clouds in cloudy-to-clear transition zones during the MAGIC field campaign

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Weidong; Marshak, Alexander; McBride, Patrick J.

2016-12-01

We use the spectrally invariant method to study the variability of cloud optical thickness τ and droplet effective radius reff in transition zones (between the cloudy and clear sky columns) observed from Solar Spectral Flux Radiometer (SSFR) and Shortwave Array Spectroradiometer-Zenith (SASZe) during the Marine ARM GPCI Investigation of Clouds (MAGIC) field campaign. The measurements from the SSFR and the SASZe are different, however inter-instrument differences of self-normalized measurements (divided by their own spectra at a fixed time) are small. The spectrally invariant method approximates the spectra in the cloud transition zone as a linear combination of definitely clear andmore » cloudy spectra, where the coefficients, slope and intercept, character-ize the spectrally invariant properties of the transition zone. Simulation results from the SBDART (Santa Barbara DISORT Atmospheric Radiative Transfer) model demonstrate that (1) the slope of the visible band is positively correlated with the cloud optical thickness τ while the intercept of the near-infrared band has high negative cor-relation with the cloud drop effective radius reff even without the exact knowledge of τ; (2) the above relations hold for all Solar Zenith Angle (SZA) and for cloud-contaminated skies. In observations using redundant measure-ments from SSFR and SASZe, we find that during cloudy-to-clear transitions, (a) the slopes of the visible band de-crease, and (b) the intercepts of the near-infrared band remain almost constant near cloud edges. The findings in simulations and observations suggest that, while the optical thickness decreases during the cloudy-to-clear transition, the cloud drop effective radius does not change when cloud edges are approached. These results sup-port the hypothesis that inhomogeneous mixing dominates near cloud edges in the studied cases.« less

Observation of the spectrally invariant properties of clouds in cloudy-to-clear transition zones during the MAGIC field campaign

DOE PAGES

Yang, Weidong; Marshak, Alexander; McBride, Patrick J.; ...

2016-08-11

We use the spectrally invariant method to study the variability of cloud optical thickness τ and droplet effective radius r eff in transition zones (between the cloudy and clear sky columns) observed from Solar Spectral Flux Radiometer (SSFR) and Shortwave Array Spectroradiometer-Zenith (SASZe) during the Marine ARM GPCI Investigation of Clouds (MAGIC) field campaign. The measurements from the SSFR and the SASZe are different, however inter-instrument differences of self-normalized measurements (divided by their own spectra at a fixed time) are small. The spectrally invariant method approximates the spectra in the cloud transition zone as a linear combination of definitely clearmore » and cloudy spectra, where the coefficients, slope and intercept, characterize the spectrally invariant properties of the transition zone. Simulation results from the SBDART (Santa Barbara DISORT Atmospheric Radiative Transfer) model demonstrate that (1) the slope of the visible band is positively correlated with the cloud optical thickness τ while the intercept of the near-infrared band has high negative correlation with the cloud drop effective radius r eff even without the exact knowledge of τ; (2) the above relations hold for all Solar Zenith Angle (SZA) and for cloud-contaminated skies. In observations using redundant measurements from SSFR and SASZe, we find that during cloudy-to-clear transitions, (a) the slopes of the visible band decrease, and (b) the intercepts of the near-infrared band remain almost constant near cloud edges. The findings in simulations and observations suggest that, while the optical thickness decreases during the cloudy-to-clear transition, the cloud drop effective radius does not change when cloud edges are approached. Furthermore, these results support the hypothesis that inhomogeneous mixing dominates near cloud edges in the studied cases.« less

Observation of the Spectrally Invariant Properties of Clouds in Cloudy-to-Clear Transition Zones During the MAGIC Field Campaign

NASA Technical Reports Server (NTRS)

Yang, Weidong; Marshak, Alexander; McBride, Patrick; Chiu, J. Christine; Knyazikhin, Yuri; Schmidt, K. Sebastian; Flynn, Connor; Lewis, Ernie R.; Eloranta, Edwin W.

2016-01-01

We use the spectrally invariant method to study the variability of cloud optical thickness tau and droplet effective radius r(sub eff) in transition zones (between the cloudy and clear sky columns) observed from Solar Spectral Flux Radiometer (SSFR) and Shortwave Array Spectroradiometer-Zenith (SASZe) during the Marine ARM GPCI Investigation of Clouds (MAGIC) field campaign. The measurements from the SSFR and the SASZe are different, however inter-instrument differences of self-normalized measurements (divided by their own spectra at a fixed time) are small. The spectrally invariant method approximates the spectra in the cloud transition zone as a linear combination of definitely clear and cloudy spectra, where the coefficients, slope and intercept, characterize the spectrally invariant properties of the transition zone. Simulation results from the SBDART (Santa Barbara DISORT Atmospheric Radiative Transfer) model demonstrate that (1) the slope of the visible band is positively correlated with the cloud optical thickness t while the intercept of the near-infrared band has high negative correlation with the cloud drop effective radius r(sub eff)even without the exact knowledge of tau; (2) the above relations hold for all Solar Zenith Angle (SZA) and for cloud-contaminated skies. In observations using redundant measurements from SSFR and SASZe, we find that during cloudy-to-clear transitions, (a) the slopes of the visible band decrease, and (b) the intercepts of the near-infrared band remain almost constant near cloud edges. The findings in simulations and observations suggest that, while the optical thickness decreases during the cloudy-to-clear transition, the cloud drop effective radius does not change when cloud edges are approached. These results support the hypothesis that inhomogeneous mixing dominates near cloud edges in the studied cases.

Spectral models for early time SN 2011fe observations

NASA Astrophysics Data System (ADS)

Baron, E.; Hoeflich, P.; Friesen, Brian; Sullivan, M.; Hsiao, E.; Ellis, R. S.; Gal-Yam, A.; Howell, D. A.; Nugent, P. E.; Dominguez, I.; Krisciunas, K.; Phillips, M. M.; Suntzeff, N.; Wang, L.; Thomas, R. C.

2015-12-01

We use observed UV through near-IR spectra to examine whether SN 2011fe can be understood in the framework of Branch-normal Type Ia supernovae (SNe Ia) and to examine its individual peculiarities. As a benchmark, we use a delayed-detonation model with a progenitor metallicity of Z⊙/20. We study the sensitivity of features to variations in progenitor metallicity, the outer density profile, and the distribution of radioactive nickel. The effect of metallicity variations in the progenitor have a relatively small effect on the synthetic spectra. We also find that the abundance stratification of SN 2011fe resembles closely that of a delayed-detonation model with a transition density that has been fit to other Branch-normal SNe Ia. At early times, the model photosphere is formed in material with velocities that are too high, indicating that the photosphere recedes too slowly or that SN 2011fe has a lower specific energy in the outer ≈0.1 M⊙ than does the model. We discuss several explanations for the discrepancies. Finally, we examine variations in both the spectral energy distribution and in the colours due to variations in the progenitor metallicity, which suggests that colours are only weak indicators for the progenitor metallicity, in the particular explosion model that we have studied. We do find that the flux in the U band is significantly higher at maximum light in the solar metallicity model than in the lower metallicity model and the lower metallicity model much better matches the observed spectrum.

Spectral models for early time SN 2011fe observations

DOE PAGES

Baron, E.; Hoeflich, P.; Friesen, Brian; ...

2015-10-13

We use observed UV through near-IR spectra to examine whether SN 2011fe can be understood in the framework of Branch-normal Type Ia supernovae (SNe Ia) and to examine its individual peculiarities. As a benchmark, we use a delayed-detonationmodel with a progenitormetallicity of Z ⊙/20. We study the sensitivity of features to variations in progenitor metallicity, the outer density profile, and the distribution of radioactive nickel. The effect of metallicity variations in the progenitor have a relatively small effect on the synthetic spectra. We also find that the abundance stratification of SN 2011fe resembles closely that of a delayed-detonation model withmore » a transition density that has been fit to other Branch-normal SNe Ia. At early times, the model photosphere is formed in material with velocities that are too high, indicating that the photosphere recedes too slowly or that SN 2011fe has a lower specific energy in the outer ≈0.1 M ⊙ than does the model. We discuss several explanations for the discrepancies. Lastly, we examine variations in both the spectral energy distribution and in the colours due to variations in the progenitor metallicity, which suggests that colours are only weak indicators for the progenitor metallicity, in the particular explosion model that we have studied. Here we do find that the flux in the U band is significantly higher at maximum light in the solar metallicity model than in the lower metallicity model and the lower metallicity model much better matches the observed spectrum.« less

Investigation of the variance and spectral anisotropies of the solar wind turbulence with multiple point spacecraft observations

NASA Astrophysics Data System (ADS)

Vech, Daniel; Chen, Christopher

2016-04-01

One of the most important features of the plasma turbulence is the anisotropy, which arises due to the presence of the magnetic field. The understanding of the anisotropy is particularly important to reveal how the turbulent cascade operates. It is well known that anisotropy exists with respect to the mean magnetic field, however recent theoretical studies suggested anisotropy with respect to the radial direction. The purpose of this study is to investigate the variance and spectral anisotropies of the solar wind turbulence with multiple point spacecraft observations. The study includes the Advanced Composition Analyzer (ACE), WIND and Cluster spacecraft data. The second order structure functions are derived for two different spacecraft configurations: when the pair of spacecraft are separated radially (with respect to the spacecraft -Sun line) and when they are separated along the transverse direction. We analyze the effect of the different sampling directions on the variance anisotropy, global spectral anisotropy, local 3D spectral anisotropy and discuss the implications for our understanding of solar wind turbulence.

Mass spectral analysis of C3 and C4 aliphatic amino acid derivatives.

NASA Technical Reports Server (NTRS)

Lawless, J. G.; Chadha, M. S.

1971-01-01

Diagnostic criteria are obtained for the distinction of alpha, beta, gamma, and N-methyl isomers of the C3 and C4 aliphatic amino acids, using mass spectral analysis of the derivatives of these acids. The use of deuterium labeling has helped in the understanding of certain fragmentation pathways.

Forest Fragmentation

Treesearch

Kurt H. Riitters

2007-01-01

What Is Forest Fragmentation,and Why Is It Important? Forest fragmentation refers to a loss of forest and the division of the remaining forest into smaller blocks. Fragmentation is of concern primarily because of its impact on the conservation of biological diversity. Forest fragmentation can affect the amount and quality of habitat for many wildlife species (Fahrig...

Synthesis and testing of ZnO nanoparticles for photo-initiation: experimental observation of two different non-migration initiators for bulk polymerization

NASA Astrophysics Data System (ADS)

Schmitt, M.

2015-05-01

The migration and transport of polymerization initiators are problematic for commercially used polymerization procedures. For example, UV printing of packaging generates products with potentially harmful components that come in contact with food. Enlarging the size of the initiator is the only way to prevent contamination, e.g., by gas phase transport. In this manuscript, the synthesis and advanced and full analyses of novel nanoparticle-based types of non-migration, fragmenting and non-fragmenting photo-initiators will be presented in detail. This study introduces non-fragmenting/``Norrish type II'' and fragmenting/``Norrish type I'' ZnO nanoparticle-based initiators and compares them with two commercial products, a ``Norrish type I'' initiator and a ``Norrish type II'' initiator. Therefore, inter alia, the recently developed analysis involves examining the solidification by UV-vis and the double bond content by Raman. Irradiation is performed using absolute and spectrally calibrated xenon flash lights. A novel procedure for absolute and spectral calibration of such light sources is also presented. The non-optimized ``Norrish type II'' particle-based initiator is already many times faster than benzophenone, which is a molecular initiator of the same non-fragmenting type. This experimentally observed difference in reactive particle-based systems without co-initiators is unexpected. Co-initiators are normally an additional molecular species, which leads to migration problems. The discovery of significant initiation potential resulting in a very well-dispersed organic-inorganic hybrid material suggests a new field of research opportunities at the interface of physical chemistry, polymer chemistry and engineering science, with enormous value for human health.The migration and transport of polymerization initiators are problematic for commercially used polymerization procedures. For example, UV printing of packaging generates products with potentially harmful

Efficiency of the spectral-spatial classification of hyperspectral imaging data

NASA Astrophysics Data System (ADS)

Borzov, S. M.; Potaturkin, O. I.

2017-01-01

The efficiency of methods of the spectral-spatial classification of similarly looking types of vegetation on the basis of hyperspectral data of remote sensing of the Earth, which take into account local neighborhoods of analyzed image pixels, is experimentally studied. Algorithms that involve spatial pre-processing of the raw data and post-processing of pixel-based spectral classification maps are considered. Results obtained both for a large-size hyperspectral image and for its test fragment with different methods of training set construction are reported. The classification accuracy in all cases is estimated through comparisons of ground-truth data and classification maps formed by using the compared methods. The reasons for the differences in these estimates are discussed.

Europa in the Far-UV: Spatial and Spectral Analysis from HST Observations

NASA Astrophysics Data System (ADS)

Becker, Tracy M.; Retherford, Kurt D.; Roth, Lorenz; Hendrix, Amanda R.; McGrath, Melissa; Alday, Juan; Saur, Joachim; Molyneux, Philippa M.; Raut, Ujjwal; Teolis, Benjamin

2017-10-01

We present a spatial and spectral analysis of Europa using far-UV observations from 1999 - 2015 made by the Space Telescope Imaging Spectrograph (STIS) on the Hubble Space Telescope (HST). Disk-integrated observations show that the far-UV spectrum from ~130 nm - 170 nm is blue (increasing albedo with decreasing wavelength) for the studied hemispheres: the leading, trailing, and anti-Jovian hemispheres. At Lyman-alpha (121.6 nm), the albedo of the trailing hemisphere continues the blue trend, but it reddens for the leading hemisphere. At wavelengths shorter than 133.5 nm, the leading hemisphere, which is brighter than the trailing hemisphere at near-UV and visible wavelengths, becomes darker than the trailing hemisphere. We find no evidence of a sharp water-ice absorption edge at 165 nm on any hemisphere of Europa, which is intriguing since such an absorption feature has been observed on most icy moons. This suggests the possibility that radiolytic alteration by Jovian magnetospheric plasma has made the surface more strongly absorbing, masking the absorption edge. We will also present a spatial map of Lyman-alpha across the entire surface of Europa. This map can then be used to distinguish variable H emissions in the atmosphere from surface reflectance, improving our ability to detect potential plumes occurring on the disk of Europa during an observation.

SOFIA/EXES High Spectral Resolution Observations of the Orion Hot Core

NASA Astrophysics Data System (ADS)

Rangwala, Naseem; Colgan, Sean; Le Gal, Romane; Acharya, Kinsuk; Huang, Xinchuan; Herbst, Eric; Lee, Timothy J.; Richter, Matthew J.; Boogert, Adwin

2018-01-01

The Orion hot core has one of the richest molecular chemistries observed in the ISM. In the MIR, the Orion hot core composition is best probed by the closest, compact, bright background continuum source in this region, IRc2. We present high-spectral resolution observations from 12.96 - 13.33 μm towards Orion IRc2 using the mid-infrared spectrograph, EXES, on SOFIA, to probe the physical and chemical conditions of the Orion hot core. All ten of the rovibrational C2H2 transitions expected in our spectral coverage, are detected with high S/N, yielding continuous coverage of the R-branch lines from J=9-8 to J=18-17, including both ortho and para species. Eight of these rovibrational transitions are newly reported detections. These data show distinct ortho and para ladders towards the Orion hot core for the first time, with an ortho to para ratio (OPR) of only 0.6 - much lower than the high temperature equilibrium value of 3. A non-equilibrium OPR is a further indication of the Orion hot core being heated externally by shocks likely resulting from a well-known explosive event which occurred 500 yrs ago. The OPR conversion timescales are much longer than the 500 yr shock timescale and thus a low OPR might be a remnant from an earlier colder pre-stellar phase before the density enhancement (now the hot core) was impacted by shocks.We will also present preliminary results from an on-going SOFIA Cycle-5 impact program to use EXES to conduct an unbiased, high-S/N, continuous, molecular line survey of the Orion hot core from 12.5 - 28.3 microns. This survey is expected to be 50 times better than ISO in detecting isolated, narrow lines to (a) resolve the ro-vibrational structure of the gas phase molecules and their kinematics, (b) detect new gas phase molecules missed by ISO, and (c) provide useful constraints on the hot core chemistry and the source of Orion hot core excitation. This survey will greatly enhance the inventory of resolved line features in the MIR for hot cores

Target fragmentation in radiobiology

NASA Technical Reports Server (NTRS)

Wilson, John W.; Cucinotta, Francis A.; Shinn, Judy L.; Townsend, Lawrence W.

1993-01-01

Nuclear reactions in biological systems produce low-energy fragments of the target nuclei seen as local high events of linear energy transfer (LET). A nuclear-reaction formalism is used to evaluate the nuclear-induced fields within biosystems and their effects within several biological models. On the basis of direct ionization interaction, one anticipates high-energy protons to have a quality factor and relative biological effectiveness (RBE) of unity. Target fragmentation contributions raise the effective quality factor of 10 GeV protons to 3.3 in reasonable agreement with RBE values for induced micronuclei in bean sprouts. Application of the Katz model indicates that the relative increase in RBE with decreasing exposure observed in cell survival experiments with 160 MeV protons is related solely to target fragmentation events. Target fragment contributions to lens opacity given an RBE of 1.4 for 2 GeV protons in agreement with the work of Lett and Cox. Predictions are made for the effective RBE for Harderian gland tumors induced by high-energy protons. An exposure model for lifetime cancer risk is derived from NCRP 98 risk tables, and protraction effects are examined for proton and helium ion exposures. The implications of dose rate enhancement effects on space radiation protection are considered.

Spectral Properties and Dynamics of Gold Nanorods Revealed by EMCCD Based Spectral-Phasor Method

PubMed Central

Chen, Hongtao; Digman, Michelle A.

2015-01-01

Gold nanorods (NRs) with tunable plasmon-resonant absorption in the near-infrared region have considerable advantages over organic fluorophores as imaging agents. However, the luminescence spectral properties of NRs have not been fully explored at the single particle level in bulk due to lack of proper analytic tools. Here we present a global spectral phasor analysis method which allows investigations of NRs' spectra at single particle level with their statistic behavior and spatial information during imaging. The wide phasor distribution obtained by the spectral phasor analysis indicates spectra of NRs are different from particle to particle. NRs with different spectra can be identified graphically in corresponding spatial images with high spectral resolution. Furthermore, spectral behaviors of NRs under different imaging conditions, e.g. different excitation powers and wavelengths, were carefully examined by our laser-scanning multiphoton microscope with spectral imaging capability. Our results prove that the spectral phasor method is an easy and efficient tool in hyper-spectral imaging analysis to unravel subtle changes of the emission spectrum. Moreover, we applied this method to study the spectral dynamics of NRs during direct optical trapping and by optothermal trapping. Interestingly, spectral shifts were observed in both trapping phenomena. PMID:25684346

Fragment size distribution in viscous bag breakup of a drop

NASA Astrophysics Data System (ADS)

Kulkarni, Varun; Bulusu, Kartik V.; Plesniak, Michael W.; Sojka, Paul E.

2015-11-01

In this study we examine the drop size distribution resulting from the fragmentation of a single drop in the presence of a continuous air jet. Specifically, we study the effect of Weber number, We, and Ohnesorge number, Oh on the disintegration process. The regime of breakup considered is observed between 12 <= We <= 16 for Oh <= 0.1. Experiments are conducted using phase Doppler anemometry. Both the number and volume fragment size probability distributions are plotted. The volume probability distribution revealed a bi-modal behavior with two distinct peaks: one corresponding to the rim fragments and the other to the bag fragments. This behavior was suppressed in the number probability distribution. Additionally, we employ an in-house particle detection code to isolate the rim fragment size distribution from the total probability distributions. Our experiments showed that the bag fragments are smaller in diameter and larger in number, while the rim fragments are larger in diameter and smaller in number. Furthermore, with increasing We for a given Ohwe observe a large number of small-diameter drops and small number of large-diameter drops. On the other hand, with increasing Oh for a fixed We the opposite is seen.

Fragmentation of the Chelyabinsk Fireball

NASA Astrophysics Data System (ADS)

Melosh, J.

2013-12-01

The most intense bolide since the 1908 Tunguska event occurred in the early morning hours of 15 February 2013 near the Russian town of Chelyabinsk. The impacting asteroid ranged between 17 and 20 m diameter with a mass of about 10,000 tons. Its estimated pre-atmospheric velocity was about 18.6 km/sec at a low angle of 20° from the horizontal. The resulting airburst occurred at an altitude of about 23 km and released an estimated total energy of about 440 kT (1.7 x 1015 J). The blast wave shattered windows on the ground over a wide area and collapsed the roof of a zinc factory. In spite of the size of the initital asteroid, only small fragments (a few kg, so far) have been recovered. The entry of an asteroid into Earth's atmosphere and its aerodynamic fragmentation and deceleration has been modeled by a number of authors over the past few decades. Full-featured numerical simulations are presently limited in their ability to simultaneously incorporate fragmentation, energy coupling between solid fragments and the atmosphere, and thermal radiation, but an approximate treatment of the fragmentation and dispersion of a large entering meteoroid called the 'pancake model' has achieved good fits to other observed events, including the Tunguska explosion, the 1947 Shikote-Alin fall and strewn fields from larger iron meteorite falls, such as the Henbury craters. Simulations using the pancake model can fit the overall observations of the Chelyabinsk event using an 18 m diameter asteroid of density 3000 kg/m3 following the observed trajectory and possessing an initial strength of about 7 MPa, which is relatively high for a stony meteoroid. This suggests that the asteroid was not a strengthless rubble pile, but in fact possessed considerable strength, compared to other stony meteorites of similar type. Aerodynamic breakup begins at an altitude of 31 km and the final airburst occurs at 22 km, releasing about 250 kT at this time. Subsequent to this airburst, large fragments

Forming spectroscopic massive protobinaries by disc fragmentation

NASA Astrophysics Data System (ADS)

Meyer, D. M.-A.; Kuiper, R.; Kley, W.; Johnston, K. G.; Vorobyov, E.

2018-01-01

The surroundings of massive protostars constitute an accretion disc which has numerically been shown to be subject to fragmentation and responsible for luminous accretion-driven outbursts. Moreover, it is suspected to produce close binary companions which will later strongly influence the star's future evolution in the Hertzsprung-Russel diagram. We present three-dimensional gravitation-radiation-hydrodynamic numerical simulations of 100 M⊙ pre-stellar cores. We find that accretion discs of young massive stars violently fragment without preventing the (highly variable) accretion of gaseous clumps on to the protostars. While acquiring the characteristics of a nascent low-mass companion, some disc fragments migrate on to the central massive protostar with dynamical properties showing that its final Keplerian orbit is close enough to constitute a close massive protobinary system, having a young high- and a low-mass components. We conclude on the viability of the disc fragmentation channel for the formation of such short-period binaries, and that both processes - close massive binary formation and accretion bursts - may happen at the same time. FU-Orionis-type bursts, such as observed in the young high-mass star S255IR-NIRS3, may not only indicate ongoing disc fragmentation, but also be considered as a tracer for the formation of close massive binaries - progenitors of the subsequent massive spectroscopic binaries - once the high-mass component of the system will enter the main-sequence phase of its evolution. Finally, we investigate the Atacama Large (sub-)Millimeter Array observability of the disc fragments.

High precision measurements on fission-fragment de-excitation

NASA Astrophysics Data System (ADS)

Oberstedt, Stephan; Gatera, Angélique; Geerts, Wouter; Göök, Alf; Hambsch, Franz-Josef; Vidali, Marzio; Oberstedt, Andreas

2017-11-01

In recent years nuclear fission has gained renewed interest both from the nuclear energy community and in basic science. The first, represented by the OECD Nuclear Energy Agency, expressed the need for more accurate fission cross-section and fragment yield data for safety assessments of Generation IV reactor systems. In basic science modelling made much progress in describing the de-excitation mechanism of neutron-rich isotopes, e.g. produced in nuclear fission. Benchmarking the different models require a precise experimental data on prompt fission neutron and γ-ray emission, e.g. multiplicity, average energy per particle and total dissipated energy per fission, preferably as function of fission-fragment mass and total kinetic energy. A collaboration of scientists from JRC Geel (formerly known as JRC IRMM) and other institutes took the lead in establishing a dedicated measurement programme on prompt fission neutron and γ-ray characteristics, which has triggered even more measurement activities around the world. This contribution presents new advanced instrumentation and methodology we use to generate high-precision spectral data and will give a flavour of future data needs and opportunities.

Fast parallel tandem mass spectral library searching using GPU hardware acceleration

PubMed Central

Baumgardner, Lydia Ashleigh; Shanmugam, Avinash Kumar; Lam, Henry; Eng, Jimmy K.; Martin, Daniel B.

2011-01-01

Mass spectrometry-based proteomics is a maturing discipline of biologic research that is experiencing substantial growth. Instrumentation has steadily improved over time with the advent of faster and more sensitive instruments collecting ever larger data files. Consequently, the computational process of matching a peptide fragmentation pattern to its sequence, traditionally accomplished by sequence database searching and more recently also by spectral library searching, has become a bottleneck in many mass spectrometry experiments. In both of these methods, the main rate limiting step is the comparison of an acquired spectrum with all potential matches from a spectral library or sequence database. This is a highly parallelizable process because the core computational element can be represented as a simple but arithmetically intense multiplication of two vectors. In this paper we present a proof of concept project taking advantage of the massively parallel computing available on graphics processing units (GPUs) to distribute and accelerate the process of spectral assignment using spectral library searching. This program, which we have named FastPaSS (for Fast Parallelized Spectral Searching) is implemented in CUDA (Compute Unified Device Architecture) from NVIDIA which allows direct access to the processors in an NVIDIA GPU. Our efforts demonstrate the feasibility of GPU computing for spectral assignment, through implementation of the validated spectral searching algorithm SpectraST in the CUDA environment. PMID:21545112

Fast parallel tandem mass spectral library searching using GPU hardware acceleration.

PubMed

Baumgardner, Lydia Ashleigh; Shanmugam, Avinash Kumar; Lam, Henry; Eng, Jimmy K; Martin, Daniel B

2011-06-03

Mass spectrometry-based proteomics is a maturing discipline of biologic research that is experiencing substantial growth. Instrumentation has steadily improved over time with the advent of faster and more sensitive instruments collecting ever larger data files. Consequently, the computational process of matching a peptide fragmentation pattern to its sequence, traditionally accomplished by sequence database searching and more recently also by spectral library searching, has become a bottleneck in many mass spectrometry experiments. In both of these methods, the main rate-limiting step is the comparison of an acquired spectrum with all potential matches from a spectral library or sequence database. This is a highly parallelizable process because the core computational element can be represented as a simple but arithmetically intense multiplication of two vectors. In this paper, we present a proof of concept project taking advantage of the massively parallel computing available on graphics processing units (GPUs) to distribute and accelerate the process of spectral assignment using spectral library searching. This program, which we have named FastPaSS (for Fast Parallelized Spectral Searching), is implemented in CUDA (Compute Unified Device Architecture) from NVIDIA, which allows direct access to the processors in an NVIDIA GPU. Our efforts demonstrate the feasibility of GPU computing for spectral assignment, through implementation of the validated spectral searching algorithm SpectraST in the CUDA environment.

The spectral details of observed and simulated short-term water vapor feedbacks of El Niño-Southern Oscillation

NASA Astrophysics Data System (ADS)

Pan, F.; Huang, X.; Chen, X.

2015-12-01

Radiative kernel method has been validated and widely used in the study of climate feedbacks. This study uses spectrally resolved longwave radiative kernels to examine the short-term water vapor feedbacks associated with the ENSO cycles. Using a 500-year GFDL CM3 and a 100-year NCAR CCSM4 pre-industry control simulation, we have constructed two sets of longwave spectral radiative kernels. We then composite El Niño, La Niña and ENSO-neutral states and estimate the water vapor feedbacks associated with the El Niño and La Niña phases of ENSO cycles in both simulations. Similar analysis is also applied to 35-year (1979-2014) ECMWF ERA-interim reanalysis data, which is deemed as observational results here. When modeled and observed broadband feedbacks are compared to each other, they show similar geographic patterns but with noticeable discrepancies in the contrast between the tropics and extra-tropics. Especially, in El Niño phase, the feedback estimated from reanalysis is much greater than those from the model simulations. Considering the observational data span, we carry out a sensitivity test to explore the variability of feedback-deriving using 35-year data. To do so, we calculate the water vapor feedback within every 35-year segment of the GFDL CM3 control run by two methods: one is to composite El Nino or La Nina phases as mentioned above and the other is to regressing the TOA flux perturbation caused by water vapor change (δR_H­2O) against the global-mean surface temperature a­­­­nomaly. We find that the short-term feedback strengths derived from composite method can change considerably from one segment to another segment, while the feedbacks by regression method are less sensitive to the choice of segment and their strengths are also much smaller than those from composite analysis. This study suggests that caution is warranted in order to infer long-term feedbacks from a few decades of observations. When spectral details of the global-mean feedbacks

Synthesis and testing of ZnO nanoparticles for photo-initiation: experimental observation of two different non-migration initiators for bulk polymerization.

PubMed

Schmitt, M

2015-06-07

The migration and transport of polymerization initiators are problematic for commercially used polymerization procedures. For example, UV printing of packaging generates products with potentially harmful components that come in contact with food. Enlarging the size of the initiator is the only way to prevent contamination, e.g., by gas phase transport. In this manuscript, the synthesis and advanced and full analyses of novel nanoparticle-based types of non-migration, fragmenting and non-fragmenting photo-initiators will be presented in detail. This study introduces non-fragmenting/"Norrish type II" and fragmenting/"Norrish type I" ZnO nanoparticle-based initiators and compares them with two commercial products, a "Norrish type I" initiator and a "Norrish type II" initiator. Therefore, inter alia, the recently developed analysis involves examining the solidification by UV-vis and the double bond content by Raman. Irradiation is performed using absolute and spectrally calibrated xenon flash lights. A novel procedure for absolute and spectral calibration of such light sources is also presented. The non-optimized "Norrish type II" particle-based initiator is already many times faster than benzophenone, which is a molecular initiator of the same non-fragmenting type. This experimentally observed difference in reactive particle-based systems without co-initiators is unexpected. Co-initiators are normally an additional molecular species, which leads to migration problems. The discovery of significant initiation potential resulting in a very well-dispersed organic-inorganic hybrid material suggests a new field of research opportunities at the interface of physical chemistry, polymer chemistry and engineering science, with enormous value for human health.

Analyzing Internal Fragmentation of Electrosprayed Ubiquitin Ions During Beam-Type Collisional Dissociation

NASA Astrophysics Data System (ADS)

Durbin, Kenneth R.; Skinner, Owen S.; Fellers, Ryan T.; Kelleher, Neil L.

2015-05-01

Gaseous fragmentation of intact proteins is multifaceted and can be unpredictable by current theories in the field. Contributing to the complexity is the multitude of precursor ion states and fragmentation channels. Terminal fragment ions can be re-fragmented, yielding product ions containing neither terminus, termed internal fragment ions. In an effort to better understand and capitalize upon this fragmentation process, we collisionally dissociated the high (13+), middle (10+), and low (7+) charge states of electrosprayed ubiquitin ions. Both terminal and internal fragmentation processes were quantified through step-wise increases of voltage potential in the collision cell. An isotope fitting algorithm matched observed product ions to theoretical terminal and internal fragment ions. At optimal energies for internal fragmentation of the 10+, nearly 200 internal fragments were observed; on average each of the 76 residues in ubiquitin was covered by 24.1 internal fragments. A pertinent finding was that formation of internal ions occurs at similar energy thresholds as terminal b- and y-ion types in beam-type activation. This large amount of internal fragmentation is frequently overlooked during top-down mass spectrometry. As such, we present several new approaches to visualize internal fragments through modified graphical fragment maps. With the presented advances of internal fragment ion accounting and visualization, the total percentage of matched fragment ions increased from approximately 40% to over 75% in a typical beam-type MS/MS spectrum. These sequence coverage improvements offer greater characterization potential for whole proteins with no needed experimental changes and could be of large benefit for future high-throughput intact protein analysis.

Solar Spectral Irradiance and Climate

NASA Technical Reports Server (NTRS)

Pilewskie, P.; Woods, T.; Cahalan, R.

2012-01-01

Spectrally resolved solar irradiance is recognized as being increasingly important to improving our understanding of the manner in which the Sun influences climate. There is strong empirical evidence linking total solar irradiance to surface temperature trends - even though the Sun has likely made only a small contribution to the last half-century's global temperature anomaly - but the amplitudes cannot be explained by direct solar heating alone. The wavelength and height dependence of solar radiation deposition, for example, ozone absorption in the stratosphere, absorption in the ocean mixed layer, and water vapor absorption in the lower troposphere, contribute to the "top-down" and "bottom-up" mechanisms that have been proposed as possible amplifiers of the solar signal. New observations and models of solar spectral irradiance are needed to study these processes and to quantify their impacts on climate. Some of the most recent observations of solar spectral variability from the mid-ultraviolet to the near-infrared have revealed some unexpected behavior that was not anticipated prior to their measurement, based on an understanding from model reconstructions. The atmospheric response to the observed spectral variability, as quantified in climate model simulations, have revealed similarly surprising and in some cases, conflicting results. This talk will provide an overview on the state of our understanding of the spectrally resolved solar irradiance, its variability over many time scales, potential climate impacts, and finally, a discussion on what is required for improving our understanding of Sun-climate connections, including a look forward to future observations.

Fragmentation of molecular tributyltin chloride

NASA Astrophysics Data System (ADS)

Osmekhin, S.; Caló, A.; Kisand, V.; Nõmmiste, E.; Kotilainen, H.; Aksela, H.; Aksela, S.

2008-06-01

Fragmentation of tributyltin chloride (TBTCl) vapour has been studied experimentally by means of time-of-flight mass spectrometry at the photon energy range of 9-25 eV of synchrotron radiation, at 21.22 eV of HeI as well as with 500 eV electron beam excitation. Branching ratios of the tributyltin chloride fragments taken with HeI and synchrotron radiation have been presented first time. Calculations based on density functional theory (DFT) were carried out for TBTCl and the ionization energies obtained were used to predict the dissociation pathways creating the observed ions.

Comparison of Species Richness Estimates Obtained Using Nearly Complete Fragments and Simulated Pyrosequencing-Generated Fragments in 16S rRNA Gene-Based Environmental Surveys▿ †

PubMed Central

Youssef, Noha; Sheik, Cody S.; Krumholz, Lee R.; Najar, Fares Z.; Roe, Bruce A.; Elshahed, Mostafa S.

2009-01-01

Pyrosequencing-based 16S rRNA gene surveys are increasingly utilized to study highly diverse bacterial communities, with special emphasis on utilizing the large number of sequences obtained (tens to hundreds of thousands) for species richness estimation. However, it is not yet clear how the number of operational taxonomic units (OTUs) and, hence, species richness estimates determined using shorter fragments at different taxonomic cutoffs correlates with the number of OTUs assigned using longer, nearly complete 16S rRNA gene fragments. We constructed a 16S rRNA clone library from an undisturbed tallgrass prairie soil (1,132 clones) and used it to compare species richness estimates obtained using eight pyrosequencing candidate fragments (99 to 361 bp in length) and the nearly full-length fragment. Fragments encompassing the V1 and V2 (V1+V2) region and the V6 region (generated using primer pairs 8F-338R and 967F-1046R) overestimated species richness; fragments encompassing the V3, V7, and V7+V8 hypervariable regions (generated using primer pairs 338F-530R, 1046F-1220R, and 1046F-1392R) underestimated species richness; and fragments encompassing the V4, V5+V6, and V6+V7 regions (generated using primer pairs 530F-805R, 805F-1046R, and 967F-1220R) provided estimates comparable to those obtained with the nearly full-length fragment. These patterns were observed regardless of the alignment method utilized or the parameter used to gauge comparative levels of species richness (number of OTUs observed, slope of scatter plots of pairwise distance values for short and nearly complete fragments, and nonparametric and parametric species richness estimates). Similar results were obtained when analyzing three other datasets derived from soil, adult Zebrafish gut, and basaltic formations in the East Pacific Rise. Regression analysis indicated that these observed discrepancies in species richness estimates within various regions could readily be explained by the proportions of

The Zeeman effect or linear birefringence? VLA polarimetric spectral line observations of H2O masers

NASA Astrophysics Data System (ADS)

Zhao, Jun-Hui; Goss, W. M.; Diamond, P.

We present line profiles of the four Stokes parameters of H2O masers at 22 GHz observed with the VLA in full polarimetric spectral line mode. With careful calibration, the instrumental effects such as linear leakage and the difference of antenna gain between RCP and LCP, can be minimized. Our measurements show a few percent linear polarization. Weak circular polarization was detected at a level of 0.1 percent of the peak intensity. A large uncertainty in the measurements of weak circular polarization is caused by telescope pointing errors. The observed polarization of H2O masers can be interpreted as either the Zeeman effect or linear birefringence.

Fragmentation of cancer cells

NASA Astrophysics Data System (ADS)

Vanapalli, Siva; Kamyabi, Nabiollah

Tumor cells have to travel through blood capillaries to be able to metastasize and colonize in distant organs. Among the numerous cells that are shed by the primary tumor, very few survive in circulation. In vivo studies have shown that tumor cells can undergo breakup at microcapillary junctions affecting their survival. It is currently unclear what hydrodynamic and biomechanical factors contribute to fragmentation and moreover how different are the breakup dynamics of highly and weakly metastatic cells. In this study, we use microfluidics to investigate flow-induced breakup of prostate and breast cancer cells. We observe several different modes of breakup of cancer cells, which have striking similarities with breakup of viscous drops. We quantify the breakup time and find that highly metastatic cancer cells take longer to breakup than lowly metastatic cells suggesting that tumor cells may dynamically modify their deformability to avoid fragmentation. We also identify the role that cytoskeleton and membrane plays in the breakup process. Our study highlights the important role that tumor cell fragmentation plays in cancer metastasis. Cancer Prevention and Research Institute of Texas.

Missing Fragments: Detecting Cooperative Binding in Fragment-Based Drug Design

PubMed Central

2012-01-01

The aim of fragment-based drug design (FBDD) is to identify molecular fragments that bind to alternate subsites within a given binding pocket leading to cooperative binding when linked. In this study, the binding of fragments to human phenylethanolamine N-methyltransferase is used to illustrate how (a) current protocols may fail to detect fragments that bind cooperatively, (b) theoretical approaches can be used to validate potential hits, and (c) apparent false positives obtained when screening against cocktails of fragments may in fact indicate promising leads. PMID:24900472

Spectral distortions of the cosmic microwave background

NASA Technical Reports Server (NTRS)

Adams, Fred C.; Mcdowell, Jonathan C.; Freese, Katherine; Levin, Janna

1989-01-01

Recent experiments indicate that the spectrum of the cosmic microwave background deviates from a pure blackbody; here, spectral distortions produced by cosmic dust are considered. The main result is that cosmic dust in conjunction with an injected radiation field (perhaps produced by an early generation of very massive stars) can explain the observed spectral distortions without violating existing cosmological constraints. In addition, it is shown that Compton y-distortions can also explain the observed spectral shape, but the energetic requirements are more severe.

Spectral characteristics and meridional variations of energy transformations during the first and second special observation periods of FGGE

NASA Technical Reports Server (NTRS)

Kung, E. C.; Tanaka, H.

1984-01-01

The global features and meridional spectral energy transformation variations of the first and second special observation periods of the First Global GARP Experiment (FGGE) are investigated, together with the latitudinal distribution of the kinetic energy balance. Specific seasonal characteristics are shown by the spectral distributions of the global transformations between (1) zonal mean and eddy components of the available potential energy, (2) the zonal mean and eddy components of the kinetic energy, and (3) the available potential energy and the kinetic energy. Maximum kinetic energy production is found to occur at subtropical latitudes, with a secondary maximum at higher middle latitudes. Between these two regions, there is another region characterized by the adiabatic destruction of kinetic energy above the lower troposphere.

Factors affecting calcium oxalate dihydrate fragmented calculi regrowth

PubMed Central

Costa-Bauzá, A; Perelló, J; Isern, B; Sanchis, P; Grases, F

2006-01-01

Background The use of extracorporeal shock wave lithotripsy (ESWL) to treat calcium oxalate dihydrate (COD) renal calculi gives excellent fragmentation results. However, the retention of post-ESWL fragments within the kidney remains an important health problem. This study examined the effect of various urinary conditions and crystallization inhibitors on the regrowth of spontaneously-passed post-ESWL COD calculi fragments. Methods Post-ESWL COD calculi fragments were incubated in chambers containing synthetic urine varying in pH and calcium concentration: pH = 5.5 normocalciuria (3.75 mM), pH = 5.5 hypercalciuria (6.25 mM), pH = 6.5 normocalciuria (3.75 mM) or pH = 6.5 hypercalciuria (6.25 mM). Fragment growth was evaluated by measuring increases in weight. Fragment growth was standardized by calculating the relative mass increase. Results Calcium oxalate monohydrate (COM) crystals formed on COD renal calculi fragments under all conditions. Under pH = 5.5 normocalciuria conditions, only COM crystals formed (growth rate = 0.22 ± 0.04 μg/mg·h). Under pH = 5.5 hypercalciuria and under pH = 6.5 normocalciuria conditions, COM crystals and a small number of new COD crystals formed (growth rate = 0.32 ± 0.03 μg/mg·h and 0.35 ± 0.05 μg/mg·h, respectively). Under pH = 6.5 hypercalciuria conditions, large amounts of COD, COM, hydroxyapatite and brushite crystals formed (growth rate = 3.87 ± 0. 34 μg/mg·h). A study of three crystallization inhibitors demonstrated that phytate completely inhibited fragment growth (2.27 μM at pH = 5.5 and 4.55 μM at pH = 6.5, both under hypercalciuria conditions), while 69.0 μM pyrophosphate caused an 87% reduction in mass under pH = 6.5 hypercalciuria conditions. In contrast, 5.29 mM citrate did not inhibit fragment mass increase under pH = 6.5 hypercalciuria conditions. Conclusion The growth rate of COD calculi fragments under pH = 6.5 hypercalciuria conditions was approximately ten times that observed under the other three

LAMOST OBSERVATIONS IN THE KEPLER FIELD: SPECTRAL CLASSIFICATION WITH THE MKCLASS CODE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gray, R. O.; Corbally, C. J.; Cat, P. De

2016-01-15

The LAMOST-Kepler project was designed to obtain high-quality, low-resolution spectra of many of the stars in the Kepler field with the Large Sky Area Multi Object Fiber Spectroscopic Telescope (LAMOST) spectroscopic telescope. To date 101,086 spectra of 80,447 objects over the entire Kepler field have been acquired. Physical parameters, radial velocities, and rotational velocities of these stars will be reported in other papers. In this paper we present MK spectral classifications for these spectra determined with the automatic classification code MKCLASS. We discuss the quality and reliability of the spectral types and present histograms showing the frequency of the spectralmore » types in the main table organized according to luminosity class. Finally, as examples of the use of this spectral database, we compute the proportion of A-type stars that are Am stars, and identify 32 new barium dwarf candidates.« less

Spectrally resolved single-molecule electrometry

NASA Astrophysics Data System (ADS)

Ruggeri, F.; Krishnan, M.

2018-03-01

Escape-time electrometry is a recently developed experimental technique that offers the ability to measure the effective electrical charge of a single biomolecule in solution with sub-elementary charge precision. The approach relies on measuring the average escape-time of a single charged macromolecule or molecular species transiently confined in an electrostatic fluidic trap. Comparing the experiments with the predictions of a mean-field model of molecular electrostatics, we have found that the measured effective charge even reports on molecular conformation, e.g., folded or disordered state, and non-uniform charge distribution in disordered proteins or polyelectrolytes. Here we demonstrate the ability to use the spectral dimension to distinguish minute differences in electrical charge between individual molecules or molecular species in a single simultaneous measurement, under identical experimental conditions. Using one spectral channel for referenced measurement, this kind of photophysical distinguishability essentially eliminates the need for accurate knowledge of key experimental parameters, otherwise obtained through intensive characterization of the experimental setup. As examples, we demonstrate the ability to detect small differences (˜5%) in the length of double-stranded DNA fragments as well as single amino acid exchange in an intrinsically disordered protein, prothymosin α.

Multi-wavelength Spectral Analysis of Ellerman Bombs Observed by FISS and IRIS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hong, Jie; Ding, M. D.; Cao, Wenda, E-mail: dmd@nju.edu.cn

Ellerman bombs (EBs) are a kind of solar activity that is suggested to occur in the lower solar atmosphere. Recent observations using the Interface Region Imaging Spectrograph (IRIS) show connections between EBs and IRIS bombs (IBs), which imply that EBs might be heated to a much higher temperature (8 × 10{sup 4} K) than previous results. Here we perform a spectral analysis of EBs simultaneously observed by the Fast Imaging Solar Spectrograph and IRIS. The observational results show clear evidence of heating in the lower atmosphere, indicated by the wing enhancement in H α , Ca ii 8542 Å, andmore » Mg ii triplet lines and also by brightenings in images of the 1700 Å and 2832 Å ultraviolet continuum channels. Additionally, the intensity of the Mg ii triplet line is correlated with that of H α when an EB occurs, suggesting the possibility of using the triplet as an alternative way to identify EBs. However, we do not find any signal in IRIS hotter lines (C ii and Si iv). For further analysis, we employ a two-cloud model to fit the two chromospheric lines (H α and Ca ii 8542 Å) simultaneously, and obtain a temperature enhancement of 2300 K for a strong EB. This temperature is among the highest of previous modeling results, albeit still insufficient to produce IB signatures at ultraviolet wavelengths.« less

A Compact Airborne High Spectral Resolution Lidar for Observations of Aerosol and Cloud Optical Properties

NASA Technical Reports Server (NTRS)

Hostetler, Chris A.; Hair, John W.; Cook, Anthony L.

2002-01-01

We are in the process of developing a nadir-viewing, aircraft-based high spectral resolution lidar (HSRL) at NASA Langley Research Center. The system is designed to measure backscatter and extinction of aerosols and tenuous clouds. The primary uses of the instrument will be to validate spaceborne aerosol and cloud observations, carry out regional process studies, and assess the predictions of chemical transport models. In this paper, we provide an overview of the instrument design and present the results of simulations showing the instrument's capability to accurately measure extinction and extinction-to-backscatter ratio.

On disciplinary fragmentation and scientific progress.

PubMed

Balietti, Stefano; Mäs, Michael; Helbing, Dirk

2015-01-01

Why are some scientific disciplines, such as sociology and psychology, more fragmented into conflicting schools of thought than other fields, such as physics and biology? Furthermore, why does high fragmentation tend to coincide with limited scientific progress? We analyzed a formal model where scientists seek to identify the correct answer to a research question. Each scientist is influenced by three forces: (i) signals received from the correct answer to the question; (ii) peer influence; and (iii) noise. We observed the emergence of different macroscopic patterns of collective exploration, and studied how the three forces affect the degree to which disciplines fall apart into divergent fragments, or so-called "schools of thought". We conducted two simulation experiments where we tested (A) whether the three forces foster or hamper progress, and (B) whether disciplinary fragmentation causally affects scientific progress and vice versa. We found that fragmentation critically limits scientific progress. Strikingly, there is no effect in the opposite causal direction. What is more, our results shows that at the heart of the mechanisms driving scientific progress we find (i) social interactions, and (ii) peer disagreement. In fact, fragmentation is increased and progress limited if the simulated scientists are open to influence only by peers with very similar views, or when within-school diversity is lost. Finally, disciplines where the scientists received strong signals from the correct answer were less fragmented and experienced faster progress. We discuss model's implications for the design of social institutions fostering interdisciplinarity and participation in science.

On Disciplinary Fragmentation and Scientific Progress

PubMed Central

Balietti, Stefano; Mäs, Michael; Helbing, Dirk

2015-01-01

Why are some scientific disciplines, such as sociology and psychology, more fragmented into conflicting schools of thought than other fields, such as physics and biology? Furthermore, why does high fragmentation tend to coincide with limited scientific progress? We analyzed a formal model where scientists seek to identify the correct answer to a research question. Each scientist is influenced by three forces: (i) signals received from the correct answer to the question; (ii) peer influence; and (iii) noise. We observed the emergence of different macroscopic patterns of collective exploration, and studied how the three forces affect the degree to which disciplines fall apart into divergent fragments, or so-called “schools of thought”. We conducted two simulation experiments where we tested (A) whether the three forces foster or hamper progress, and (B) whether disciplinary fragmentation causally affects scientific progress and vice versa. We found that fragmentation critically limits scientific progress. Strikingly, there is no effect in the opposite causal direction. What is more, our results shows that at the heart of the mechanisms driving scientific progress we find (i) social interactions, and (ii) peer disagreement. In fact, fragmentation is increased and progress limited if the simulated scientists are open to influence only by peers with very similar views, or when within-school diversity is lost. Finally, disciplines where the scientists received strong signals from the correct answer were less fragmented and experienced faster progress. We discuss model’s implications for the design of social institutions fostering interdisciplinarity and participation in science. PMID:25790025

A year-long AGILE observation of Cygnus X-1 in hard spectral state

NASA Astrophysics Data System (ADS)

Del Monte, E.; Feroci, M.; Evangelista, Y.; Costa, E.; Donnarumma, I.; Lapshov, I.; Lazzarotto, F.; Pacciani, L.; Rapisarda, M.; Soffitta, P.; Argan, A.; Barbiellini, G.; Boffelli, F.; Bulgarelli, A.; Caraveo, P.; Cattaneo, P. W.; Chen, A.; D'Ammando, F.; Di Cocco, G.; Fuschino, F.; Galli, M.; Gianotti, F.; Giuliani, A.; Labanti, C.; Lipari, P.; Longo, F.; Marisaldi, M.; Mereghetti, S.; Moretti, E.; Morselli, A.; Pellizzoni, A.; Perotti, F.; Piano, G.; Picozza, P.; Pilia, M.; Prest, M.; Pucella, G.; Rappoldi, A.; Sabatini, S.; Striani, E.; Tavani, M.; Trifoglio, M.; Trois, A.; Vallazza, E.; Vercellone, S.; Vittorini, V.; Zambra, A.; Antonelli, L. A.; Cutini, S.; Pittori, C.; Preger, B.; Santolamazza, P.; Verrecchia, F.; Giommi, P.; Salotti, L.

2010-09-01

Context. Cygnus X-1 (Cyg X-1) is a high mass X-ray binary system, known to be a black hole candidate and one of the brightest sources in the X-ray sky, which shows both variability on all timescales and frequent flares. The source spends most of the time in a hard spectral state, dominated by a power-law emission, with occasional transitions to the soft and intermediate states, where a strong blackbody component emerges. Aims: We present the observation of Cyg X-1 in a hard spectral state performed during the AGILE science verification phase and observing cycle 1 in hard X-rays (with SuperAGILE) and gamma rays (with the gamma ray imaging detector) and lasting for about 160 days with a live time of ~6 Ms. Methods: We investigated the variability of Cyg X-1 in hard X-rays on different timescales, from ~300 s up to one day, and we applied different tools of timing analysis, such as the autocorrelation function, the first-order structure function, and the Lomb-Scargle periodogram, to our data (from SuperAGILE) and to the simultaneous data in soft X-rays (from RXTE/ASM). We concluded our investigation with a search for emission in the energy range above 100 MeV with the maximum likelihood technique. Results: In the hard X-ray band, the flux of Cyg X-1 shows its typical erratic fluctuations on all timescales with variations of about a factor of two that do not significantly affect the shape of the energy spectrum. From the first-order structure function, we find that the X-ray emission of Cyg X-1 is characterized by antipersistence (anticorrelation in the time series, with an increase in the emission likely followed by a decrease), indicative of a negative feedback mechanism at work. In the gamma ray data a statistically significant point-like source at the position of Cyg X-1 is not found, and the upper limit on the flux is 5 × 10-8 ph cm-2 s-1 over the whole observation (160 days). Finally we compared our upper limit in gamma rays with the expectation of various

Searching for a Differentiated Asteroid Family: A Spectral Survey of the Massalia, Merxia, and Agnia Families

NASA Astrophysics Data System (ADS)

Thomas, Cristina A.; Lim, Lucy; Moskovitz, Nicholas; Trilling, David

2015-11-01

Asteroid families were formed by catastrophic collisions or large cratering events that caused fragmentation of the parent body and ejection of asteroidal fragments with velocities sufficient to prevent re-accretion. Due to these formation processes, asteroid families should provide us with the opportunity to probe the interiors of the former parent bodies. Differentiation of a large initially chondritic parent body is expected to result in an "onion shell" object with an iron-nickel core, a thick olivine-dominated mantle, and a thin plagioclase/pyroxene crust. However, most asteroid families tend to show similar spectra (and therefore composition) among the members. Spectroscopic studies have observed a paucity of metal-like materials and olivine-dominated assemblages within the Main Belt asteroid families.The deficit of olivine-rich mantle material in the meteorite record and in asteroid observations is known as the "Missing Mantle" problem. For years the best explanation has been the "battered to bits" hypothesis: that all differentiated parent bodies (aside from Vesta) were disrupted very early in the Solar System and the resulting olivine-rich material was collisionally broken down over time until the object diameters fell below our observational limits. In a competing hypothesis, Elkins-Tanton et al. (2013) have suggested that previous work has overestimated the amount of olivine produced by the differentiation of a chondritic parent body.We are conducting a visible and near-infrared wavelength spectral survey of asteroids in the Massalia, Merxia, and Agnia S-type Main Belt asteroid families. These families were carefully chosen for the proposed spectroscopic survey because they have compositions most closely associated with a history of thermal metamorphism and because they represent a range of collisional formation scenarios. In addition, the relatively young ages (under 400 Myr) of these families permit testing of the “battering to bits'' timescale. We

Spectral Variability of Oil Slicks under Different Observing Conditions: Examples from Satellite and Airborne Measurement

NASA Astrophysics Data System (ADS)

Sun, S.; Hu, C.

2017-12-01

Optical remote sensing is one of the most commonly used techniques in detecting oil in the surface ocean. This is because that oil has different optical properties from the surrounding oil-free water and oil can also modulate surface waves, thus providing a spatial contrast to facilitate delineating the oil-water boundary. Estimating oil volume or thickness from the delineated oil footprint, on the other hand, is much more difficult and currently represents a major challenge in remote sensing of oil spills. Several studies have attempted to associate reflectance spectra (magnitude and spectral shape) with oil thickness from experiments under controlled conditions, where such established relationships were used to quantify oil thickness. However, it is unclear whether or how these experiment derived relationships could be used in the real environment. Here, oil pixel spectra were extracted from several satellite sensors including Landsat, MERIS, MODIS and MISR together with airborne sensor AVIRIS that captured during the Deepwater Horizon oil spill in 2010. Same day imagery of these sensors were co-registered to compare spectra difference of oil under different observing conditions. Combining those resulted spectra with laboratory-measured oil spectra in previous study, oil's diverse spectral magnitudes and shapes were presented. Besides oil thickness, we concluded several other potential factors that may contribute significantly to the spectral response of oil slicks in the marine environment, which include sun glint strength, oil emulsification state, optical properties of oil covered water and remote sensing imagery's spatial resolution as well. And future perspectives for more accurate estimation of oil thickness are proposed.

Spectral and Temporal Analysis of 1H1934-0617: Observing an “Eclipsed” AGN with XMM-Newton and NuSTAR

NASA Astrophysics Data System (ADS)

Frederick, Sara; Kara, Erin; Reynolds, Christopher S.

2017-01-01

1H1934-0617 is a low-mass (3×106 M⊙) NLS1 which was ranked as 7th in excess variance among AGN comprising the CAIXA catalogue (Ponti 2012). Similar to its high-ranking and oft-studied counterparts, this AGN is extremely time-variable, luminous, and displays strong reflection features. We present spectral and temporal analyses of concurrent XMM-Newton and NuSTAR observations (120 ks), during which we explore a dramatic dip in flux, similar to that of Fairall 9 (Lohfink 2012, 2016). The transit-like dip appears in the NuSTAR band, and the spectral shape of the 0.3-2 keV band remains constant throughout the flux varied observation, ruling out a strong absorber. XMM-Newton’s large effective area and NuSTAR’s constraints on the 10-79 keV band combine to inform us about the source geometry, black hole spin, and emission/absorption processes as we speculate on the nature of the variability of this scarcely-studied AGN. Preliminary spectral modeling indicates that the dip in flux can be understood as a decrease in the height of the corona, and preliminary timing analysis shows hints of an iron K reverberation lag.

Aerosol and Cloud Interaction Observed From High Spectral Resolution Lidar Data

NASA Technical Reports Server (NTRS)

Su, Wenying; Schuster, Gregory L.; Loeb, Norman G.; Rogers, Raymond R.; Ferrare, Richard A.; Hostetler, Chris A.; Hair, Johnathan W.; Obland, Michael D.

2008-01-01

Recent studies utilizing satellite retrievals have shown a strong correlation between aerosol optical depth (AOD) and cloud cover. However, these retrievals from passive sensors are subject to many limitations, including cloud adjacency (or 3D) effects, possible cloud contamination, uncertainty in the AOD retrieval. Some of these limitations do not exist in High Spectral Resolution Lidar (HSRL) observations; for instance, HSRL observations are not a ected by cloud adjacency effects, are less prone to cloud contamination, and offer accurate aerosol property measurements (backscatter coefficient, extinction coefficient, lidar ratio, backscatter Angstrom exponent,and aerosol optical depth) at a neospatial resolution (less than 100 m) in the vicinity of clouds. Hence, the HSRL provides an important dataset for studying aerosol and cloud interaction. In this study, we statistically analyze aircraft-based HSRL profiles according to their distance from the nearest cloud, assuring that all profile comparisons are subject to the same large-scale meteorological conditions. Our results indicate that AODs from HSRL are about 17% higher in the proximity of clouds (approximately 100 m) than far away from clouds (4.5 km), which is much smaller than the reported cloud 3D effect on AOD retrievals. The backscatter and extinction coefficients also systematically increase in the vicinity of clouds, which can be explained by aerosol swelling in the high relative humidity (RH) environment and/or aerosol growth through in cloud processing (albeit not conclusively). On the other hand, we do not observe a systematic trend in lidar ratio; we hypothesize that this is caused by the opposite effects of aerosol swelling and aerosol in-cloud processing on the lidar ratio. Finally, the observed backscatter Angstrom exponent (BAE) does not show a consistent trend because of the complicated relationship between BAE and RH. We demonstrate that BAE should not be used as a surrogate for Angstrom

Defining and Detecting Complex Peak Relationships in Mass Spectral Data: The Mz.unity Algorithm.

PubMed

Mahieu, Nathaniel G; Spalding, Jonathan L; Gelman, Susan J; Patti, Gary J

2016-09-20

Analysis of a single analyte by mass spectrometry can result in the detection of more than 100 degenerate peaks. These degenerate peaks complicate spectral interpretation and are challenging to annotate. In mass spectrometry-based metabolomics, this degeneracy leads to inflated false discovery rates, data sets containing an order of magnitude more features than analytes, and an inefficient use of resources during data analysis. Although software has been introduced to annotate spectral degeneracy, current approaches are unable to represent several important classes of peak relationships. These include heterodimers and higher complex adducts, distal fragments, relationships between peaks in different polarities, and complex adducts between features and background peaks. Here we outline sources of peak degeneracy in mass spectra that are not annotated by current approaches and introduce a software package called mz.unity to detect these relationships in accurate mass data. Using mz.unity, we find that data sets contain many more complex relationships than we anticipated. Examples include the adduct of glutamate and nicotinamide adenine dinucleotide (NAD), fragments of NAD detected in the same or opposite polarities, and the adduct of glutamate and a background peak. Further, the complex relationships we identify show that several assumptions commonly made when interpreting mass spectral degeneracy do not hold in general. These contributions provide new tools and insight to aid in the annotation of complex spectral relationships and provide a foundation for improved data set identification. Mz.unity is an R package and is freely available at https://github.com/nathaniel-mahieu/mz.unity as well as our laboratory Web site http://pattilab.wustl.edu/software/ .

Procedure for assessing the performance of a rockfall fragmentation model

NASA Astrophysics Data System (ADS)

Matas, Gerard; Lantada, Nieves; Corominas, Jordi; Gili, Josep Antoni; Ruiz-Carulla, Roger; Prades, Albert

2017-04-01

A Rockfall is a mass instability process frequently observed in road cuts, open pit mines and quarries, steep slopes and cliffs. It is frequently observed that the detached rock mass becomes fragmented when it impacts with the slope surface. The consideration of the fragmentation of the rockfall mass is critical for the calculation of block's trajectories and their impact energies, to further assess their potential to cause damage and design adequate preventive structures. We present here the performance of the RockGIS model. It is a GIS-Based tool that simulates stochastically the fragmentation of the rockfalls, based on a lumped mass approach. In RockGIS, the fragmentation initiates by the disaggregation of the detached rock mass through the pre-existing discontinuities just before the impact with the ground. An energy threshold is defined in order to determine whether the impacting blocks break or not. The distribution of the initial mass between a set of newly generated rock fragments is carried out stochastically following a power law. The trajectories of the new rock fragments are distributed within a cone. The model requires the calibration of both the runout of the resultant blocks and the spatial distribution of the volumes of fragments generated by breakage during their propagation. As this is a coupled process which is controlled by several parameters, a set of performance criteria to be met by the simulation have been defined. The criteria includes: position of the centre of gravity of the whole block distribution, histogram of the runout of the blocks, extent and boundaries of the young debris cover over the slope surface, lateral dispersion of trajectories, total number of blocks generated after fragmentation, volume distribution of the generated fragments, the number of blocks and volume passages past a reference line and the maximum runout distance Since the number of parameters to fit increases significantly when considering fragmentation, the

Cross-calibration of Medium Resolution Earth Observing Satellites by Using EO-1 Hyperion-derived Spectral Surface Reflectance from "Lunar Cal Sites"

NASA Astrophysics Data System (ADS)

Ungar, S.

2017-12-01

Over the past 3 years, the Earth Observing-one (EO-1) Hyperion imaging spectrometer was used to slowly scan the lunar surface at a rate which results in up to 32X oversampling to effectively increase the SNR. Several strategies, including comparison against the USGS RObotic Lunar Observatory (ROLO) mode,l are being employed to estimate the absolute and relative accuracy of the measurement set. There is an existing need to resolve discrepancies as high as 10% between ROLO and solar based calibration of current NASA EOS assets. Although the EO-1 mission was decommissioned at the end of March 2017, the development of a well-characterized exoatmospheric spectral radiometric database, for a range of lunar phase angles surrounding the fully illuminated moon, continues. Initial studies include a comprehensive analysis of the existing 17-year collection of more than 200 monthly lunar acquisitions. Specific lunar surface areas, such as a lunar mare, are being characterized as potential "lunar calibration sites" in terms of their radiometric stability in the presence of lunar nutation and libration. Site specific Hyperion-derived lunar spectral reflectance are being compared against spectrographic measurements made during the Apollo program. Techniques developed through this activity can be employed by future high-quality orbiting imaging spectrometers (such as HyspIRI and EnMap) to further refine calibration accuracies. These techniques will enable the consistent cross calibration of existing and future earth observing systems (spectral and multi-spectral) including those that do not have lunar viewing capability. When direct lunar viewing is not an option for an earth observing asset, orbiting imaging spectrometers can serve as transfer radiometers relating that asset's sensor response to lunar values through near contemporaneous observations of well characterized stable CEOS test sites. Analysis of this dataset will lead to the development of strategies to ensure more

Formation of wide binaries by turbulent fragmentation

NASA Astrophysics Data System (ADS)

Lee, Jeong-Eun; Lee, Seokho; Dunham, Michael M.; Tatematsu, Ken'ichi; Choi, Minho; Bergin, Edwin A.; Evans, Neal J.

2017-08-01

Understanding the formation of wide-binary systems of very low-mass stars (M ≤ 0.1 solar masses, M⊙) is challenging 1,2,3 . The most obvious route is through widely separated low-mass collapsing fragments produced by turbulent fragmentation of a molecular core4,5. However, close binaries or multiples from disk fragmentation can also evolve to wide binaries over a few initial crossing times of the stellar cluster through tidal evolution6. Finding an isolated low-mass wide-binary system in the earliest stage of formation, before tidal evolution could occur, would prove that turbulent fragmentation is a viable mechanism for (very) low-mass wide binaries. Here we report high-resolution ALMA observations of a known wide-separation protostellar binary, showing that each component has a circumstellar disk. The system is too young7 to have evolved from a close binary, and the disk axes are misaligned, providing strong support for the turbulent fragmentation model. Masses of both stars are derived from the Keplerian rotation of the disks; both are very low-mass stars.

Observational Signatures of Black Holes: Spectral and Temporal Features of XTE J1550-564

NASA Technical Reports Server (NTRS)

Titarchuk, Lev; Shrader, C. R.; White, Nicholas E. (Technical Monitor)

2002-01-01

The theoretical predictions of the converging inflow, or Bulk-Motion Comptonization model are discussed and some predictions are compared to X- and gamma-ray observations of the high-soft state of Galactic black hole candidate XTE J1550+564. The approx. 10(exp 2)-Hz QPO phenomenon tends to be detected in the high-state at times when the bolometric luminosity surges and the hard-powerlaw spectral component is dominant. Furthermore, the power in these features increases with energy. We offer interpretation of this phenomenon, as oscillations of the innermost part of the accretion disk, which in turn supplies the seed photons for the converging inflow where the hard power-law is formed through Bulk Motion Comptonization (BMC). We further argue that the noted lack of coherence between intensity variations of the high-soft-state low and high energy bands is a natural consequence of our model, and that a natural explanation for the observed hard and soft lag phenomenon is offered. In addition, we address some criticisms of the BMC model supporting our claims with observational results.

IRAS observations of the Rho Ophiuchi infrared cluster - Spectral energy distributions and luminosity function

NASA Technical Reports Server (NTRS)

Wilking, Bruce A.; Lada, Charles J.; Young, Eric T.

1989-01-01

High-sensitivity IRAS coadded survey data, coupled with new high-sensitivity near-IR observations, are used to investigate the nature of embedded objects over an 4.3-sq-pc area comprising the central star-forming cloud of the Ophiuchi molecular complex; the area encompasses the central cloud of the Rho Ophiuchi complex and includes the core region. Seventy-eight members of the embedded cluster were identified; spectral energy distributions were constructed for 53 objects and were compared with theoretical models to gain insight into their evolutionary status. Bolometric luminosities could be estimated for nearly all of the association members, leading to a revised luminosity function for this dust-embedded cluster.

Spectral heterogeneity on Phobos and Deimos: HiRISE observations and comparisons to Mars Pathfinder results

USGS Publications Warehouse

Thomas, N.; Stelter, R.; Ivanov, A.; Bridges, N.T.; Herkenhoff, K. E.; McEwen, A.S.

2011-01-01

The High-Resolution Imaging Science Experiment (HiRISE) onboard Mars Reconnaissance Orbiter (MRO) has been used to observe Phobos and Deimos at spatial scales of around 6 and 20 m/px, respectively. HiRISE (McEwen et al.; JGR, 112, CiteID E05S02, DOI: 10.1029/2005JE002605, 2007) has provided, for the first time, high-resolution colour images of the surfaces of the Martian moons. When processed, by the production of colour ratio images for example, the data show considerable small-scale heterogeneity, which might be attributable to fresh impacts exposing different materials otherwise largely hidden by a homogenous regolith. The bluer material that is draped over the south-eastern rim of the largest crater on Phobos, Stickney, has been perforated by an impact to reveal redder material and must therefore be relatively thin. A fresh impact with dark crater rays has been identified. Previously identified mass-wasting features in Stickney and Limtoc craters stand out strongly in colour. The interior deposits in Stickney appear more inhomogeneous than previously suspected. Several other local colour variations are also evident. Deimos is more uniform in colour but does show some small-scale inhomogeneity. The bright streamers (Thomas et al.; Icarus, 123, 536556,1996) are relatively blue. One crater to the south-west of Voltaire and its surroundings appear quite strongly reddened with respect to the rest of the surface. The reddening of the surroundings may be the result of ejecta from this impact. The spectral gradients at optical wavelengths observed for both Phobos and Deimos are quantitatively in good agreement with those found by unresolved photometric observations made by the Imager for Mars Pathfinder (IMP; Thomas et al.; JGR, 104, 90559068, 1999). The spectral gradients of the blue and red units on Phobos bracket the results from IMP. ?? 2010 Elsevier Ltd. All rights reserved.

Can the periodic spectral modulations observed in 236 Sloan Sky Survey stars be due to dark matter effects?

NASA Astrophysics Data System (ADS)

Tamburini, Fabrizio; Licata, Ignazio

2017-09-01

The search for dark matter (DM) is one of the most active and challenging areas of current research. Possible DM candidates are ultralight fields such as axions and weak interacting massive particles (WIMPs). Axions piled up in the center of stars are supposed to generate matter/DM configurations with oscillating geometries at a very rapid frequency, which is a multiple of the axion mass m B (Brito et al (2015); Brito et al (2016)). Borra and Trottier (2016) recently found peculiar ultrafast periodic spectral modulations in 236 main sequence stars in the sample of 2.5 million spectra of galactic halo stars of the Sloan Digital Sky Survey (˜1% of main sequence stars in the F-K spectral range) that were interpreted as optical signals from extraterrestrial civilizations, suggesting them as possible candidates for the search for extraterrestrial intelligence (SETI) program. We argue, instead, that this could be the first indirect evidence of bosonic axion-like DM fields inside main sequence stars, with a stable radiative nucleus, where a stable DM core can be hosted. These oscillations were not observed in earlier stellar spectral classes probably because of the impossibility of starting a stable oscillatory regime due to the presence of chaotic motions in their convective nuclei. The axion mass values, (50< {m}B< 2.4× {10}3) μ {eV}, obtained from the frequency range observed by Borra and Trottier, (0.6070< f< 0.6077) THz, agree with the recent theoretical results from high-temperature lattice quantum chromodynamics (Borsanyi et al (2016); Borsanyi et al (2016b)).

Inference of Ice Cloud Properties from High-spectral Resolution Infrared Observations. Appendix 4

NASA Technical Reports Server (NTRS)

Huang, Hung-Lung; Yang, Ping; Wei, Heli; Baum, Bryan A.; Hu, Yongxiang; Antonelli, Paolo; Ackerman, Steven A.

2005-01-01

The theoretical basis is explored for inferring the microphysical properties of ice crystal from high-spectral resolution infrared observations. A radiative transfer model is employed to simulate spectral radiances to address relevant issues. The extinction and absorption efficiencies of individual ice crystals, assumed as hexagonal columns for large particles and droxtals for small particles, are computed from a combination of the finite- difference time-domain (FDTD) technique and a composite method. The corresponding phase functions are computed from a combination of FDTD and an improved geometric optics method (IGOM). Bulk scattering properties are derived by averaging the single- scattering properties of individual particles for 30 particle size distributions developed from in situ measurements and for additional four analytical Gamma size distributions for small particles. The non-sphericity of ice crystals is shown to have a significant impact on the radiative signatures in the infrared (IR) spectrum; the spherical particle approximation for inferring ice cloud properties may result in an overest&ation of the optical thickness and an inaccurate retrieval of effective particle size. Furthermore, we show that the error associated with the use of the Henyey-Greenstein phase function can be as larger as 1 K in terms of brightness temperature for larger particle effective size at some strong scattering wavenumbers. For small particles, the difference between the two phase functions is much less, with brightness temperatures generally differing by less than 0.4 K. The simulations undertaken in this study show that the slope of the IR brightness temperature spectrum between 790-960/cm is sensitive to the effective particle size. Furthermore, a strong sensitivity of IR brightness temperature to cloud optical thickness is noted within the l050-1250/cm region. Based on this spectral feature, a technique is presented for the simultaneous retrieval of the visible

Temporal and Spectral Analyses of SGRs Observed by HETE-2

NASA Astrophysics Data System (ADS)

Nakagawa, Y. E.; Yoshida, A.; Maetou, M.; Suzuki, M.; Tamagawa, T.; Sakamoto, T.; Kawai, N.; Shirasaki, Y.; Tanaka, K.; Matsuoka, M.; Fenimore, E. E.; Galassi, M.; Atteia, J.-L.; Hurley, K.; Ricker, G. R.

2006-05-01

HETE-2 localized 63 flares from SGR1806-20 and 6 flares from SGR1900+14 in the summer periods from June 18 2001 through August 7 2005. We report on the temporal and spectral analyses of short flares from those SGRs. The estimation of T90 durations in 2-30 keV and 30-100 keV revealed that there is no difference between them with a few exceptions. For these exceptional short flares, there seems softening or possibly hardening during flares, but these spectral evolution are not common. We also found a good linear correlation between the rise and decay time, and they do not depend on a peak flux. We also found that the spectra are well reproduced by a sum of two blackbody models for all short flares. The temperatures are lying around 4 keV and 11 keV which are consistent with previous studies. They are not depend on either the magnitude of flare, the event morphology or the source.

Pepitome: evaluating improved spectral library search for identification complementarity and quality assessment

PubMed Central

Dasari, Surendra; Chambers, Matthew C.; Martinez, Misti A.; Carpenter, Kristin L.; Ham, Amy-Joan L.; Vega-Montoto, Lorenzo J.; Tabb, David L.

2012-01-01

Spectral libraries have emerged as a viable alternative to protein sequence databases for peptide identification. These libraries contain previously detected peptide sequences and their corresponding tandem mass spectra (MS/MS). Search engines can then identify peptides by comparing experimental MS/MS scans to those in the library. Many of these algorithms employ the dot product score for measuring the quality of a spectrum-spectrum match (SSM). This scoring system does not offer a clear statistical interpretation and ignores fragment ion m/z discrepancies in the scoring. We developed a new spectral library search engine, Pepitome, which employs statistical systems for scoring SSMs. Pepitome outperformed the leading library search tool, SpectraST, when analyzing data sets acquired on three different mass spectrometry platforms. We characterized the reliability of spectral library searches by confirming shotgun proteomics identifications through RNA-Seq data. Applying spectral library and database searches on the same sample revealed their complementary nature. Pepitome identifications enabled the automation of quality analysis and quality control (QA/QC) for shotgun proteomics data acquisition pipelines. PMID:22217208

Mapping accuracy via spectrally and structurally based filtering techniques: comparisons through visual observations

NASA Astrophysics Data System (ADS)

Chockalingam, Letchumanan

2005-01-01

The data of Gunung Ledang region of Malaysia acquired through LANDSAT are considered to map certain hydrogeolocial features. To map these significant features, image-processing tools such as contrast enhancement, edge detection techniques are employed. The advantages of these techniques over the other methods are evaluated from the point of their validity in properly isolating features of hydrogeolocial interest are discussed. As these techniques take the advantage of spectral aspects of the images, these techniques have several limitations to meet the objectives. To discuss these limitations, a morphological transformation, which generally considers the structural aspects rather than spectral aspects from the image, are applied to provide comparisons between the results derived from spectral based and the structural based filtering techniques.

Microstructural characterization of pipe bomb fragments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gregory, Otto, E-mail: gregory@egr.uri.edu; Oxley, Jimmie; Smith, James

2010-03-15

Recovered pipe bomb fragments, exploded under controlled conditions, have been characterized using scanning electron microscopy, optical microscopy and microhardness. Specifically, this paper examines the microstructural changes in plain carbon-steel fragments collected after the controlled explosion of galvanized, schedule 40, continuously welded, steel pipes filled with various smokeless powders. A number of microstructural changes were observed in the recovered pipe fragments: deformation of the soft alpha-ferrite grains, deformation of pearlite colonies, twin formation, bands of distorted pearlite colonies, slip bands, and cross-slip bands. These microstructural changes were correlated with the relative energy of the smokeless powder fillers. The energy of themore » smokeless powder was reflected in a reduction in thickness of the pipe fragments (due to plastic strain prior to fracture) and an increase in microhardness. Moreover, within fragments from a single pipe, there was a radial variation in microhardness, with the microhardness at the outer wall being greater than that at the inner wall. These findings were consistent with the premise that, with the high energy fillers, extensive plastic deformation and wall thinning occurred prior to pipe fracture. Ultimately, the information collected from this investigation will be used to develop a database, where the fragment microstructure and microhardness will be correlated with type of explosive filler and bomb design. Some analyses, specifically wall thinning and microhardness, may aid in field characterization of explosive devices.« less

Fragmentation of protoplanetary discs around M-dwarfs

NASA Astrophysics Data System (ADS)

Backus, Isaac; Quinn, Thomas

2016-12-01

We investigate the conditions required for planet formation via gravitational instability (GI) and protoplanetary disc (PPD) fragmentation around M-dwarfs. Using a suite of 64 SPH simulations with 106 particles, the parameter space of disc mass, temperature, and radius is explored, bracketing reasonable values based on theory and observation. Our model consists of an equilibrium, gaseous, and locally isothermal disc orbiting a central star of mass M* = M⊙/3. Discs with a minimum Toomre Q of Qmin ≲ 0.9 will fragment and form gravitationally bound clumps. Some previous literature has found Qmin < 1.3-1.5 to be sufficient for fragmentation. Increasing disc height tends to stabilize discs, and when incorporated into Q as Qeff ∝ Q(H/R)α for α = 0.18 is sufficient to predict fragmentation. Some discrepancies in the literature regarding Qcrit may be due to different methods of generating initial conditions (ICs). A series of 15 simulations demonstrates that perturbing ICs slightly out of equilibrium can cause discs to fragment for higher Q. Our method for generating ICs is presented in detail. We argue that GI likely plays a role in PPDs around M-dwarfs and that disc fragmentation at large radii is a plausible outcome for these discs.

SPATIALLY AND SPECTRALLY RESOLVED OBSERVATIONS OF A ZEBRA PATTERN IN A SOLAR DECIMETRIC RADIO BURST

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen Bin; Bastian, T. S.; Gary, D. E.

2011-07-20

We present the first interferometric observation of a zebra-pattern radio burst with simultaneous high spectral ({approx}1 MHz) and high time (20 ms) resolution. The Frequency-Agile Solar Radiotelescope Subsystem Testbed (FST) and the Owens Valley Solar Array (OVSA) were used in parallel to observe the X1.5 flare on 2006 December 14. By using OVSA to calibrate the FST, the source position of the zebra pattern can be located on the solar disk. With the help of multi-wavelength observations and a nonlinear force-free field extrapolation, the zebra source is explored in relation to the magnetic field configuration. New constraints are placed onmore » the source size and position as a function of frequency and time. We conclude that the zebra burst is consistent with a double-plasma resonance model in which the radio emission occurs in resonance layers where the upper-hybrid frequency is harmonically related to the electron cyclotron frequency in a coronal magnetic loop.« less

Selectable fragmentation warhead

DOEpatents

Bryan, Courtney S.; Paisley, Dennis L.; Montoya, Nelson I.; Stahl, David B.

1993-01-01

A selectable fragmentation warhead capable of producing a predetermined number of fragments from a metal plate, and accelerating the fragments toward a target. A first explosive located adjacent to the plate is detonated at selected number of points by laser-driven slapper detonators. In one embodiment, a smoother-disk and a second explosive, located adjacent to the first explosive, serve to increase acceleration of the fragments toward a target. The ability to produce a selected number of fragments allows for effective destruction of a chosen target.

Towards a population synthesis model of self-gravitating disc fragmentation and tidal downsizing II: the effect of fragment-fragment interactions

NASA Astrophysics Data System (ADS)

Forgan, D. H.; Hall, C.; Meru, F.; Rice, W. K. M.

2018-03-01

It is likely that most protostellar systems undergo a brief phase where the protostellar disc is self-gravitating. If these discs are prone to fragmentation, then they are able to rapidly form objects that are initially of several Jupiter masses and larger. The fate of these disc fragments (and the fate of planetary bodies formed afterwards via core accretion) depends sensitively not only on the fragment's interaction with the disc, but also with its neighbouring fragments. We return to and revise our population synthesis model of self-gravitating disc fragmentation and tidal downsizing. Amongst other improvements, the model now directly incorporates fragment-fragment interactions while the disc is still present. We find that fragment-fragment scattering dominates the orbital evolution, even when we enforce rapid migration and inefficient gap formation. Compared to our previous model, we see a small increase in the number of terrestrial-type objects being formed, although their survival under tidal evolution is at best unclear. We also see evidence for disrupted fragments with evolved grain populations - this is circumstantial evidence for the formation of planetesimal belts, a phenomenon not seen in runs where fragment-fragment interactions are ignored. In spite of intense dynamical evolution, our population is dominated by massive giant planets and brown dwarfs at large semimajor axis, which direct imaging surveys should, but only rarely, detect. Finally, disc fragmentation is shown to be an efficient manufacturer of free-floating planetary mass objects, and the typical multiplicity of systems formed via gravitational instability will be low.

Millimetre spectral indices of transition disks and their relation to the cavity radius

NASA Astrophysics Data System (ADS)

Pinilla, P.; Benisty, M.; Birnstiel, T.; Ricci, L.; Isella, A.; Natta, A.; Dullemond, C. P.; Quiroga-Nuñez, L. H.; Henning, T.; Testi, L.

2014-04-01

Context. Transition disks are protoplanetary disks with inner depleted dust cavities that are excellent candidates for investigating the dust evolution when there is a pressure bump. A pressure bump at the outer edge of the cavity allows dust grains from the outer regions to stop their rapid inward migration towards the star and to efficiently grow to millimetre sizes. Dynamical interactions with planet(s) have been one of the most exciting theories to explain the clearing of the inner disk. Aims: We look for evidence of millimetre dust particles in transition disks by measuring their spectral index αmm with new and available photometric data. We investigate the influence of the size of the dust depleted cavity on the disk integrated millimetre spectral index. Methods: We present the 3-mm (100 GHz) photometric observations carried out with the Plateau de Bure Interferometer of four transition disks: LkHα 330, UX Tau A, LRLL 31, and LRLL 67. We used the available values of their fluxes at 345 GHz to calculate their spectral index, as well as the spectral index for a sample of twenty transition disks. We compared the observations with two kinds of models. In the first set of models, we considered coagulation and fragmentation of dust in a disk in which a cavity is formed by a massive planet located at different positions. The second set of models assumes disks with truncated inner parts at different radii and with power-law dust-size distributions, where the maximum size of grains is calculated considering turbulence as the source of destructive collisions. Results: We show that the integrated spectral index is higher for transition disks (TD) than for regular protoplanetary disks (PD) with mean values of bar{αmmTD} = 2.70 ± 0.13 and bar{αmmPD} = 2.20 ± 0.07 respectively. For transition disks, the probability that the measured spectral index is positively correlated with the cavity radius is 95%. High angular resolution imaging of transition disks is needed to

Spectral Automorphisms in Quantum Logics

NASA Astrophysics Data System (ADS)

Ivanov, Alexandru; Caragheorgheopol, Dan

2010-12-01

In quantum mechanics, the Hilbert space formalism might be physically justified in terms of some axioms based on the orthomodular lattice (OML) mathematical structure (Piron in Foundations of Quantum Physics, Benjamin, Reading, 1976). We intend to investigate the extent to which some fundamental physical facts can be described in the more general framework of OMLs, without the support of Hilbert space-specific tools. We consider the study of lattice automorphisms properties as a “substitute” for Hilbert space techniques in investigating the spectral properties of observables. This is why we introduce the notion of spectral automorphism of an OML. Properties of spectral automorphisms and of their spectra are studied. We prove that the presence of nontrivial spectral automorphisms allow us to distinguish between classical and nonclassical theories. We also prove, for finite dimensional OMLs, that for every spectral automorphism there is a basis of invariant atoms. This is an analogue of the spectral theorem for unitary operators having purely point spectrum.

Spectral CT Reconstruction with Image Sparsity and Spectral Mean

PubMed Central

Zhang, Yi; Xi, Yan; Yang, Qingsong; Cong, Wenxiang; Zhou, Jiliu

2017-01-01

Photon-counting detectors can acquire x-ray intensity data in different energy bins. The signal to noise ratio of resultant raw data in each energy bin is generally low due to the narrow bin width and quantum noise. To address this problem, here we propose an image reconstruction approach for spectral CT to simultaneously reconstructs x-ray attenuation coefficients in all the energy bins. Because the measured spectral data are highly correlated among the x-ray energy bins, the intra-image sparsity and inter-image similarity are important prior acknowledge for image reconstruction. Inspired by this observation, the total variation (TV) and spectral mean (SM) measures are combined to improve the quality of reconstructed images. For this purpose, a linear mapping function is used to minimalize image differences between energy bins. The split Bregman technique is applied to perform image reconstruction. Our numerical and experimental results show that the proposed algorithms outperform competing iterative algorithms in this context. PMID:29034267

The 1.5 Ms Observing Campaign on IRAS 13224-3809: X-ray Spectral Analysis I.

NASA Astrophysics Data System (ADS)

Jiang, J.; Parker, M. L.; Fabian, A. C.; Alston, W. N.; Buisson, D. J. K.; Cackett, E. M.; Chiang, C.-Y.; Dauser, T.; Gallo, L. C.; García, J. A.; Harrison, F. A.; Lohfink, A. M.; De Marco, B.; Kara, E.; Miller, J. M.; Miniutti, G.; Pinto, C.; Walton, D. J.; Wilkins, D. R.

2018-03-01

We present a detailed spectral analysis of the recent 1.5 Ms XMM-Newton observing campaign on the narrow line Seyfert 1 galaxy IRAS 13224-3809, taken simultaneously with 500 ks of NuSTAR data. The X-ray lightcurve shows three flux peaks, registering at about 100 times the minimum flux seen during the campaign, and rapid variability with a time scale of kiloseconds. The spectra are well fit with a primary powerlaw continuum, two relativistic-blurred reflection components from the inner accretion disk with very high iron abundance, and a simple blackbody-shaped model for the remaining soft excess. The spectral variability is dominated by the power law continuum from a corona region within a few gravitational radii from the black hole. Additionally, blueshifted Ne X, Mg XII, Si XIV and S XVI absorption lines are identified in the stacked low-flux spectrum, confirming the presence of a highly ionized outflow with velocity up to v = 0.263 and 0.229 c. We fit the absorption features with xstar models and find a relatively constant velocity outflow through the whole observation. Finally, we replace the bbody and supersolar abundance reflection models by fitting the soft excess successfully with the extended reflection model relxillD, which allows for higher densities than the standard relxill model. This returns a disk electron density ne > 1018.7 cm-3 and lowers the iron abundance from Z_Fe=24^{+3}_{-4}Z_⊙ with ne ≡ 1015 cm-3 to Z_Fe=6.6^{+0.8}_{-2.1}Z_⊙.

The 1.5 Ms observing campaign on IRAS 13224-3809 - I. X-ray spectral analysis

NASA Astrophysics Data System (ADS)

Jiang, J.; Parker, M. L.; Fabian, A. C.; Alston, W. N.; Buisson, D. J. K.; Cackett, E. M.; Chiang, C.-Y.; Dauser, T.; Gallo, L. C.; García, J. A.; Harrison, F. A.; Lohfink, A. M.; De Marco, B.; Kara, E.; Miller, J. M.; Miniutti, G.; Pinto, C.; Walton, D. J.; Wilkins, D. R.

2018-07-01

We present a detailed spectral analysis of the recent 1.5 Ms XMM-Newton observing campaign on the narrow-line Seyfert 1 galaxy IRAS 13224-3809, taken simultaneously with 500 ks of NuSTAR data. The X-ray light curve shows three flux peaks, registering at about 100 times the minimum flux seen during the campaign, and rapid variability with a time-scale of kiloseconds. The spectra are well fit with a primary power-law continuum, two relativistic-blurred reflection components from the inner accretion disc with very high iron abundance, and a simple blackbody-shaped model for the remaining soft excess. The spectral variability is dominated by the power-law continuum from a corona region within a few gravitational radii from the black hole. Additionally, blueshifted Ne X, Mg XII, Si XIV, and S XVI absorption lines are identified in the stacked low-flux spectrum, confirming the presence of a highly ionized outflow with velocity up to v = 0.267 and 0.225 c. We fit the absorption features with xstar models and find a relatively constant velocity outflow through the whole observation. Finally, we replace the bbody and supersolar abundance reflection models by fitting the soft excess successfully with the extended reflection model relxillD, which allows for higher densities than the standard relxill model. This returns a disc electron density ne > 1018.7 cm-3 and lowers the iron abundance from Z_Fe = 24^{+3}_{-4} Z_{⊙} with ne ≡ 1015 cm-3 to Z_Fe = 6.6^{+0.8}_{-2.1} Z_{⊙}.

Fast antibody fragment motion: flexible linkers act as entropic spring

PubMed Central

Stingaciu, Laura R.; Ivanova, Oxana; Ohl, Michael; Biehl, Ralf; Richter, Dieter

2016-01-01

A flexible linker region between three fragments allows antibodies to adjust their binding sites to an antigen or receptor. Using Neutron Spin Echo Spectroscopy we observed fragment motion on a timescale of 7 ns with motional amplitudes of about 1 nm relative to each other. The mechanistic complexity of the linker region can be described by a spring model with Brownian motion of the fragments in a harmonic potential. Displacements, timescale, friction and force constant of the underlying dynamics are accessed. The force constant exhibits a similar strength to an entropic spring, with friction of the fragment matching the unbound state. The observed fast motions are fluctuations in pre-existing equilibrium configurations. The Brownian motion of domains in a harmonic potential is the appropriate model to examine functional hinge motions dependent on the structural topology and highlights the role of internal forces and friction to function. PMID:27020739

Fast antibody fragment motion: flexible linkers act as entropic spring.

PubMed

Stingaciu, Laura R; Ivanova, Oxana; Ohl, Michael; Biehl, Ralf; Richter, Dieter

2016-03-29

A flexible linker region between three fragments allows antibodies to adjust their binding sites to an antigen or receptor. Using Neutron Spin Echo Spectroscopy we observed fragment motion on a timescale of 7 ns with motional amplitudes of about 1 nm relative to each other. The mechanistic complexity of the linker region can be described by a spring model with Brownian motion of the fragments in a harmonic potential. Displacements, timescale, friction and force constant of the underlying dynamics are accessed. The force constant exhibits a similar strength to an entropic spring, with friction of the fragment matching the unbound state. The observed fast motions are fluctuations in pre-existing equilibrium configurations. The Brownian motion of domains in a harmonic potential is the appropriate model to examine functional hinge motions dependent on the structural topology and highlights the role of internal forces and friction to function.

Pancam and Microscopic Imager observations of dust on the Spirit Rover: Cleaning events, spectral properties, and aggregates

USGS Publications Warehouse

Vaughan, Alicia F.; Johnson, Jeffrey R.; Herkenhoff, Kenneth E.; Sullivan, Robert; Landis, Geoffrey A.; Goetz, Walter; Madsen, Morten B.

2010-01-01

This work describes dust deposits on the Spirit Rover over 2000 sols through examination of Pancam and Microscopic Imager observations of specific locations on the rover body, including portions of the solar array, Pancam and Mini-TES calibration targets, and the magnets. This data set reveals the three "cleaning events" experienced by Spirit to date, the spectral properties of dust, and the tendency of dust particles to form aggregates 100 um and larger.

Large ejecta fragments from asteroids. [Abstract only

NASA Technical Reports Server (NTRS)

Asphaug, E.

1994-01-01

The asteroid 4 Vesta, with its unique basaltic crust, remains a key mystery of planetary evolution. A localized olivine feature suggests excavation of subcrustal material in a crater or impact basin comparable in size to the planetary radius (R(sub vesta) is approximately = 280 km). Furthermore, a 'clan' of small asteroids associated with Vesta (by spectral and orbital similarities) may be ejecta from this impact 151 and direct parents of the basaltic achondrites. To escape, these smaller (about 4-7 km) asteroids had to be ejected at speeds greater than the escape velocity, v(sub esc) is approximately = 350 m/s. This evidence that large fragments were ejected at high speed from Vesta has not been reconciled with the present understanding of impact physics. Analytical spallation models predict that an impactor capable of ejecting these 'chips off Vesta' would be almost the size of Vesta! Such an impact would lead to the catastrophic disruption of both bodies. A simpler analysis is outlined, based on comparison with cratering on Mars, and it is shown that Vesta could survive an impact capable of ejecting kilometer-scale fragments at sufficient speed. To what extent does Vesta survive the formation of such a large crater? This is best addressed using a hydrocode such as SALE 2D with centroidal gravity to predict velocities subsequent to impact. The fragmentation outcome and velocity subsequent to the impact described to demonstrate that Vesta survives without large-scale disassembly or overturning of the crust. Vesta and its clan represent a valuable dataset for testing fragmentation hydrocodes such as SALE 2D and SPH 3D at planetary scales. Resolution required to directly model spallation 'chips' on a body 100 times as large is now marginally possible on modern workstations. These boundaries are important in near-surface ejection processes and in large-scale disruption leading to asteroid families and stripped cores.

Temporal and spectral characteristics of seismicity observed at Popocatepetl volcano, central Mexico

USGS Publications Warehouse

Arciniega-Ceballos, A.; Valdes-Gonzalez, C.; Dawson, P.

2000-01-01

Popocatepetl volcano entered an eruptive phase from December 21, 1994 to March 30, 1995, which was characterized by ash and fumarolic emissions. During this eruptive episode, the observed seismicity consisted of volcano-tectonic (VT) events, long-period (LP) events and sustained tremor. Before the initial eruption on December 21, VT seismicity exhibited no increase in number until a swarm of VT earthquakes was observed at 01:31 hours local time. Visual observations of the eruption occurred at dawn the next morning. LP activity increased from an average of 7 events a day in October 1994 to 22 events per day in December 1994. At the onset of the eruption, LP activity peaked at 49 events per day. LP activity declined until mid-January 1995 when no events were observed. Tremor was first observed about one day after the initial eruption and averaged 10 h per episode. By late February 1995, tremor episodes became more intermittent, lasting less than 5 min, and the number of LP events returned to pre-eruption levels (7 events per day). Using a spectral ratio technique, low-frequency oceanic microseismic noise with a predominant peak around 7 s was removed from the broadband seismic signal of tremor and LP events. Stacks of corrected tremor episodes and LP events show that both tremor and LP events contain similar frequency features with major peaks around 1.4 Hz. Frequency analyses of LP events and tremor suggest a shallow extended source with similar radiation pattern characteristics. The distribution of VT events (between 2.5 and 10 km) also points to a shallow source of the tremor and LP events located in the first 2500 m beneath the crater. Under the assumption that the frequency characteristics of the signals are representative of an oscillator we used a fluid-filled-crack model to infer the length of the resonator.

X-ray stars observed in LAMOST spectral survey

NASA Astrophysics Data System (ADS)

Lu, Hong-peng; Zhang, Li-yun; Han, Xianming L.; Shi, Jianrong

2018-05-01

X-ray stars have been studied since the beginning of X-ray astronomy. Investigating and studying the chromospheric activity from X-ray stellar optical spectra is highly significant in providing insights into stellar magnetic activity. The big data of LAMOST survey provides an opportunity for researching stellar optical spectroscopic properties of X-ray stars. We inferred the physical properties of X-ray stellar sources from the analysis of LAMOST spectra. First, we cross-matched the X-ray stellar catalogue (12254 X-ray stars) from ARXA with LAMOST data release 3 (DR3), and obtained 984 good spectra from 713 X-ray sources. We then visually inspected and assigned spectral type to each spectrum and calculated the equivalent width (EW) of Hα line using the Hammer spectral typing facility. Based on the EW of Hα line, we found 203 spectra of 145 X-ray sources with Hα emission above the continuum. For these spectra we also measured the EWs of Hβ, Hγ, Hδ and Ca ii IRT lines of these spectra. After removing novae, planetary nebulae and OB-type stars, we found there are 127 X-ray late-type stars with Hα line emission. By using our spectra and results from the literature, we found 53 X-ray stars showing Hα variability; these objects are Classical T Tauri stars (CTTs), cataclysmic variables (CVs) or chromospheric activity stars. We also found 18 X-ray stars showing obvious emissions in the Ca ii IRT lines. Of the 18 X-ray stars, 16 are CTTs and 2 are CVs. Finally, we discussed the relationships between the EW of Hα line and X-ray flux.

Tempest: GPU-CPU computing for high-throughput database spectral matching.

PubMed

Milloy, Jeffrey A; Faherty, Brendan K; Gerber, Scott A

2012-07-06

Modern mass spectrometers are now capable of producing hundreds of thousands of tandem (MS/MS) spectra per experiment, making the translation of these fragmentation spectra into peptide matches a common bottleneck in proteomics research. When coupled with experimental designs that enrich for post-translational modifications such as phosphorylation and/or include isotopically labeled amino acids for quantification, additional burdens are placed on this computational infrastructure by shotgun sequencing. To address this issue, we have developed a new database searching program that utilizes the massively parallel compute capabilities of a graphical processing unit (GPU) to produce peptide spectral matches in a very high throughput fashion. Our program, named Tempest, combines efficient database digestion and MS/MS spectral indexing on a CPU with fast similarity scoring on a GPU. In our implementation, the entire similarity score, including the generation of full theoretical peptide candidate fragmentation spectra and its comparison to experimental spectra, is conducted on the GPU. Although Tempest uses the classical SEQUEST XCorr score as a primary metric for evaluating similarity for spectra collected at unit resolution, we have developed a new "Accelerated Score" for MS/MS spectra collected at high resolution that is based on a computationally inexpensive dot product but exhibits scoring accuracy similar to that of the classical XCorr. In our experience, Tempest provides compute-cluster level performance in an affordable desktop computer.

Observation of narrow isotopic optical magnetic resonances in individual emission spectral lines of neon

DOE Office of Scientific and Technical Information (OSTI.GOV)

Saprykin, E G; Sorokin, V A; Shalagin, A M

Narrow resonances are observed in the course of recording the individual emission lines of the glow discharge in the mixture of isotopes {sup 20}Ne and {sup 22}Ne, depending on the strength of the longitudinal magnetic field. The position of resonances in the magnetic scale corresponds to the compensation of the isotopic shift for certain spectral lines due to the Zeeman effect. It is found that the contrast of the resonances is higher for the transitions between the highly excited energy levels, and the resonances themselves are formed in the zone of longitudinal spatial nonuniformity of the magnetic field. (laser applicationsmore » and other topics in quantum electronics)« less

Spectral and spread-spectral teleportation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Humble, Travis S.

2010-06-15

We report how quantum information encoded into the spectral degree of freedom of a single-photon state may be teleported using a finite spectrally entangled biphoton state. We further demonstrate how the bandwidth of the teleported wave form can be controllably and coherently dilated using a spread-spectral variant of teleportation. We calculate analytical expressions for the fidelities of spectral and spread-spectral teleportation when complex-valued Gaussian states are transferred using a proposed experimental approach. Finally, we discuss the utility of these techniques for integrating broad-bandwidth photonic qubits with narrow-bandwidth receivers in quantum communication systems.

Impact fragmentation of a brittle metal compact

NASA Astrophysics Data System (ADS)

Tang, Megan; Hooper, Joseph P.

2018-05-01

The fragmentation behavior of a metal powder compact which is ductile in compression but brittle in tension is studied via impact experiments and analytical models. Consolidated metal compacts were prepared via cold-isostatic pressing of <10 μm zinc powder at 380 MPa followed by moderate annealing at 365 °C. The resulting zinc material is ductile and strain-hardening in high-rate uniaxial compression like a traditional metal, but is elastic-brittle in tension with a fracture toughness comparable to a ceramic. Cylindrical samples were launched up to 800 m/s in a gas gun into thin aluminum perforation targets, subjecting the projectile to a complex multiaxial and time-dependent stress state that leads to catastrophic fracture. A soft-catch mechanism using low-density artificial snow was developed to recover the impact debris, and collected fragments were analyzed to determine their size distribution down to 30 μm. Though brittle fracture occurs along original particle boundaries, no power-law fragmentation behavior was observed as is seen in other low-toughness materials. An analytical theory is developed to predict the characteristic fragment size accounting for both the sharp onset of fragmentation and the effect of increasing impact velocity.

Extending Supernova Spectral Templates for Next Generation Space Telescope Observations

NASA Astrophysics Data System (ADS)

Roberts-Pierel, Justin; Rodney, Steven A.; Steven Rodney

2018-01-01

Widely used empirical supernova (SN) Spectral Energy Distributions (SEDs) have not historically extended meaningfully into the ultraviolet (UV), or the infrared (IR). However, both are critical for current and future aspects of SN research including UV spectra as probes of poorly understood SN Ia physical properties, and expanding our view of the universe with high-redshift James Webb Space Telescope (JWST) IR observations. We therefore present a comprehensive set of SN SED templates that have been extended into the UV and IR, as well as an open-source software package written in Python that enables a user to generate their own extrapolated SEDs. We have taken a sampling of core-collapse (CC) and Type Ia SNe to get a time-dependent distribution of UV and IR colors (U-B,r’-[JHK]), and then generated color curves are used to extrapolate SEDs into the UV and IR. The SED extrapolation process is now easily duplicated using a user’s own data and parameters via our open-source Python package: SNSEDextend. This work develops the tools necessary to explore the JWST’s ability to discriminate between CC and Type Ia SNe, as well as provides a repository of SN SEDs that will be invaluable to future JWST and WFIRST SN studies.

Automated spectral classification and the GAIA project

NASA Technical Reports Server (NTRS)

Lasala, Jerry; Kurtz, Michael J.

1995-01-01

Two dimensional spectral types for each of the stars observed in the global astrometric interferometer for astrophysics (GAIA) mission would provide additional information for the galactic structure and stellar evolution studies, as well as helping in the identification of unusual objects and populations. The classification of the large quantity generated spectra requires that automated techniques are implemented. Approaches for the automatic classification are reviewed, and a metric-distance method is discussed. In tests, the metric-distance method produced spectral types with mean errors comparable to those of human classifiers working at similar resolution. Data and equipment requirements for an automated classification survey, are discussed. A program of auxiliary observations is proposed to yield spectral types and radial velocities for the GAIA-observed stars.

Soft X-ray spectral observations of quasars and high X-ray luminosity Seyfert galaxies

NASA Technical Reports Server (NTRS)

Petre, R.; Mushotzky, R. F.; Krolik, J. H.; Holt, S. S.

1983-01-01

Results of the analysis of 28 Einstein SSS observations of 15 high X-ray luminosity (L(x) 10 to the 435 power erg/s) quasars and Seyfert type 1 nuclei are presented. The 0.75-4.5 keV spectra are in general well fit by a simple model consisting of a power law plus absorption by cold gas. The averager spectral index alpha is 0.66 + or - .36, consistent with alpha for the spectrum of these objects above 2 keV. In all but one case, no evidence was found for intrinsic absorption, with an upper limit of 2 x 10 to the 21st power/sq cm. Neither was evidence found for partial covering of the active nucleus by dense, cold matter (N(H) 10 to the 22nd power/sq cm; the average upper limit on the partial covering fraction is 0.5. There is no obvious correlation between spectral index and 0175-4.5 keV X-ray luminosity (which ranges from 3 x 10 to the 43rd to 47th powers erg/s or with other source properties. The lack of intrinsic X-ray absorption allows us to place constraints on the density and temperature of the broad-line emission region, and narrow line emission region, and the intergalactic medium.

Spontaneous regression of posterior epidural migrated lumbar disc fragments: case series.

PubMed

Tarukado, Kiyoshi; Ikuta, Ko; Fukutoku, Yoshiaki; Tono, Osamu; Doi, Toshio

2015-06-01

Posterior epidural migrated lumbar disc fragments is an extremely rare disorder. Surgical treatment was performed in all reported cases. To the best of our knowledge, there are no reported cases of the use of conservative treatment for posterior epidural migrated lumbar disc fragments. To report the possibility of a spontaneous regression of posterior epidural migrated lumbar disc fragments. Case series. Four patients with posterior epidural migrated lumbar disc fragments were treated at Karatsu Red Cross Hospital between April 2008 and August 2010. Spontaneous regression of the posterior epidural migrated lumbar disc fragments with relief of symptoms was observed on magnetic resonance imaging (MRI) in three cases. Another patient underwent surgical treatment. The present and previously reported cases of posterior epidural migrated lumbar disc fragments were analyzed with respect to patient age, imaging features on MRI, the level of the lesion, clinical symptoms, treatment, and outcomes. Conservative treatment was successful, and spontaneous lesion regression was seen on MRI with symptom relief in three cases. Although posterior epidural migrated lumbar disc fragment cases are generally treated surgically, the condition can regress spontaneously over time, as do sequestrated disc fragments. Spontaneous regression of lumbar disc herniations is a widely accepted observation at present. Posterior epidural migrated lumbar disc fragments fall under the sequestrated type of disc herniation. In fact, the course of treatment for posterior epidural migrated lumbar disc fragments should be determined based on the symptoms and examination findings, as in cases of ordinary herniation. However, providing early surgical treatment is important if the patient has acute cauda equina syndrome or the neurologic symptoms worsen over time. Copyright © 2015 Elsevier Inc. All rights reserved.

A novel spectral library workflow to enhance protein identifications.

PubMed

Li, Haomin; Zong, Nobel C; Liang, Xiangbo; Kim, Allen K; Choi, Jeong Ho; Deng, Ning; Zelaya, Ivette; Lam, Maggie; Duan, Huilong; Ping, Peipei

2013-04-09

The innovations in mass spectrometry-based investigations in proteome biology enable systematic characterization of molecular details in pathophysiological phenotypes. However, the process of delineating large-scale raw proteomic datasets into a biological context requires high-throughput data acquisition and processing. A spectral library search engine makes use of previously annotated experimental spectra as references for subsequent spectral analyses. This workflow delivers many advantages, including elevated analytical efficiency and specificity as well as reduced demands in computational capacity. In this study, we created a spectral matching engine to address challenges commonly associated with a library search workflow. Particularly, an improved sliding dot product algorithm, that is robust to systematic drifts of mass measurement in spectra, is introduced. Furthermore, a noise management protocol distinguishes spectra correlation attributed from noise and peptide fragments. It enables elevated separation between target spectral matches and false matches, thereby suppressing the possibility of propagating inaccurate peptide annotations from library spectra to query spectra. Moreover, preservation of original spectra also accommodates user contributions to further enhance the quality of the library. Collectively, this search engine supports reproducible data analyses using curated references, thereby broadening the accessibility of proteomics resources to biomedical investigators. This article is part of a Special Issue entitled: From protein structures to clinical applications. Copyright © 2013 Elsevier B.V. All rights reserved.

Suzaku observations of spectral variations of the ultra-luminous X-ray source Holmberg IX X-1

NASA Astrophysics Data System (ADS)

Kobayashi, Shogo B.; Nakazawa, Kazuhiro; Makishima, Kazuo

2017-02-01

Observations of the ultra-luminous X-ray source (ULX) Holmberg IX X-1 were carried out with Suzaku twice, once on 2012 April 13 and then on 2012 October 24, with exposures of 180 ks and 217 ks, respectively. The source showed a hard power-law shaped spectrum with a mild cutoff at ˜8 keV, which is typical of ULXs when they are relatively dim. On both occasions, the 0.6-11 keV spectrum was explained successfully in terms of a cool (˜0.2 keV) multi-color disk blackbody emission model and thermal Comptonization emission produced by an electron cloud with a relatively low temperature and high optical depth, assuming that a large fraction of the disk-blackbody photons are Comptonized whereas the rest are observed directly. The 0.5-10 keV luminosity was 1.2 × 1040 erg s-1 in April, and ˜14% higher in October. This brightening was accompanied by spectral softening in ≥2 keV, with little change in the ≤2 keV spectral shape. This behavior can be understood if the accretion disk remains unchanged while the electron cloud covers a variable fraction of the disk. The absorbing column density was consistent with the galactic line-of sight value, and did not vary by more than 1.6 × 1021 cm-2. Together with the featureless spectra, these properties may not be reconciled easily with the super-critical accretion scenario of this source.

Fast antibody fragment motion: flexible linkers act as entropic spring

DOE PAGES

Stingaciu, Laura R.; Ivanova, Oxana; Ohl, Michael; ...

2016-03-29

A flexible linker region between three fragments allows antibodies to adjust their binding sites to an antigen or receptor. Using Neutron Spin Echo Spectroscopy we observed fragment motion on a timescale of 7 ns with motional amplitudes of about 1 nm relative to each other. The mechanistic complexity of the linker region can be described by a spring model with Brownian motion of the fragments in a harmonic potential. Displacements, timescale, friction and force constant of the underlying dynamics are accessed. The force constant exhibits a similar strength to an entropic spring, with friction of the fragment matching the unboundmore » state. The observed fast motions are fluctuations in pre-existing equilibrium configurations. In conclusion, the Brownian motion of domains in a harmonic potential is the appropriate model to examine functional hinge motions dependent on the structural topology and highlights the role of internal forces and friction to function.« less

Mechanics of fragmentation of crocodile skin and other thin films.

PubMed

Qin, Zhao; Pugno, Nicola M; Buehler, Markus J

2014-05-27

Fragmentation of thin layers of materials is mediated by a network of cracks on its surface. It is commonly seen in dehydrated paintings or asphalt pavements and even in graphene or other two-dimensional materials, but is also observed in the characteristic polygonal pattern on a crocodile's head. Here, we build a simple mechanical model of a thin film and investigate the generation and development of fragmentation patterns as the material is exposed to various modes of deformation. We find that the characteristic size of fragmentation, defined by the mean diameter of polygons, is strictly governed by mechanical properties of the film material. Our result demonstrates that skin fragmentation on the head of crocodiles is dominated by that it features a small ratio between the fracture energy and Young's modulus, and the patterns agree well with experimental observations. Understanding this mechanics-driven process could be applied to improve the lifetime and reliability of thin film coatings by mimicking crocodile skin.

Mechanics of fragmentation of crocodile skin and other thin films

PubMed Central

Qin, Zhao; Pugno, Nicola M.; Buehler, Markus J.

2014-01-01

Fragmentation of thin layers of materials is mediated by a network of cracks on its surface. It is commonly seen in dehydrated paintings or asphalt pavements and even in graphene or other two-dimensional materials, but is also observed in the characteristic polygonal pattern on a crocodile's head. Here, we build a simple mechanical model of a thin film and investigate the generation and development of fragmentation patterns as the material is exposed to various modes of deformation. We find that the characteristic size of fragmentation, defined by the mean diameter of polygons, is strictly governed by mechanical properties of the film material. Our result demonstrates that skin fragmentation on the head of crocodiles is dominated by that it features a small ratio between the fracture energy and Young's modulus, and the patterns agree well with experimental observations. Understanding this mechanics-driven process could be applied to improve the lifetime and reliability of thin film coatings by mimicking crocodile skin. PMID:24862190

Mechanics of fragmentation of crocodile skin and other thin films

NASA Astrophysics Data System (ADS)

Qin, Zhao; Pugno, Nicola M.; Buehler, Markus J.

2014-05-01

Fragmentation of thin layers of materials is mediated by a network of cracks on its surface. It is commonly seen in dehydrated paintings or asphalt pavements and even in graphene or other two-dimensional materials, but is also observed in the characteristic polygonal pattern on a crocodile's head. Here, we build a simple mechanical model of a thin film and investigate the generation and development of fragmentation patterns as the material is exposed to various modes of deformation. We find that the characteristic size of fragmentation, defined by the mean diameter of polygons, is strictly governed by mechanical properties of the film material. Our result demonstrates that skin fragmentation on the head of crocodiles is dominated by that it features a small ratio between the fracture energy and Young's modulus, and the patterns agree well with experimental observations. Understanding this mechanics-driven process could be applied to improve the lifetime and reliability of thin film coatings by mimicking crocodile skin.

Impact and explosion crater ejecta, fragment size, and velocity

NASA Technical Reports Server (NTRS)

Okeefe, J. D.; Ahrens, T. J.

1983-01-01

A model was developed for the mass distribution of fragments that are ejected at a given velocity for impact and explosion craters. The model is semi-empirical in nature and is derived from (1) numerical calculations of cratering and the resultant mass versus ejection velocity, (2) observed ejecta blanket particle size distributions, (3) an empirical relationship between maximum ejecta fragment size and crater diameter and an assumption on the functional form for the distribution of fragements ejected at a given velocity. This model implies that for planetary impacts into competent rock, the distribution of fragments ejected at a given velocity are nearly monodisperse, e.g., 20% of the mass of the ejecta at a given velocity contain fragments having a mass less than 0.1 times a mass of the largest fragment moving at that velocity. Using this model, the largest fragment that can be ejected from asteroids, the moon, Mars, and Earth is calculated as a function of crater diameter. In addition, the internal energy of ejecta versus ejecta velocity is found. The internal energy of fragments having velocities exceeding the escape velocity of the moon will exceed the energy required for incipient melting for solid silicates and thus, constrains the maximum ejected solid fragment size.

Magma Fragmentation

NASA Astrophysics Data System (ADS)

Gonnermann, Helge M.

2015-05-01

Magma fragmentation is the breakup of a continuous volume of molten rock into discrete pieces, called pyroclasts. Because magma contains bubbles of compressible magmatic volatiles, decompression of low-viscosity magma leads to rapid expansion. The magma is torn into fragments, as it is stretched into hydrodynamically unstable sheets and filaments. If the magma is highly viscous, resistance to bubble growth will instead lead to excess gas pressure and the magma will deform viscoelastically by fracturing like a glassy solid, resulting in the formation of a violently expanding gas-pyroclast mixture. In either case, fragmentation represents the conversion of potential energy into the surface energy of the newly created fragments and the kinetic energy of the expanding gas-pyroclast mixture. If magma comes into contact with external water, the conversion of thermal energy will vaporize water and quench magma at the melt-water interface, thus creating dynamic stresses that cause fragmentation and the release of kinetic energy. Lastly, shear deformation of highly viscous magma may cause brittle fractures and release seismic energy.

Tube pumices as strain markers of the ductile-brittle transition during magma fragmentation

NASA Astrophysics Data System (ADS)

Martí, J.; Soriano, C.; Dingwell, D. B.

1999-12-01

Magma fragmentation-the process by which relatively slow-moving magma transforms into a violent gas flow carrying fragments of magma-is the defining feature of explosive volcanism. Yet of all the processes involved in explosively erupting systems, fragmentation is possibly the least understood. Several theoretical and laboratory studies on magma degassing and fragmentation have produced a general picture of the sequence of events leading to the fragmentation of silicic magma. But there remains a debate over whether magma fragmentation is a consequence of the textural evolution of magma to a foamed state where disintegration of walls separating bubbles becomes inevitable due to a foam-collapse criterion, or whether magma is fragmented purely by stresses that exceed its tensile strength. Here we show that tube pumice-where extreme bubble elongation is observed-is a well-preserved magmatic `strain marker' of the stress state immediately before and during fragmentation. Structural elements in the pumice record the evolution of the magma's mechanical response from viscous behaviour (foaming and foam elongation) through the plastic or viscoelastic stage, and finally to brittle behaviour. These observations directly support the hypothesis that fragmentation occurs when magma undergoes a ductile-brittle transition and stresses exceed the magma's tensile strength.

Spectrum-based method to generate good decoy libraries for spectral library searching in peptide identifications.

PubMed

Cheng, Chia-Ying; Tsai, Chia-Feng; Chen, Yu-Ju; Sung, Ting-Yi; Hsu, Wen-Lian

2013-05-03

As spectral library searching has received increasing attention for peptide identification, constructing good decoy spectra from the target spectra is the key to correctly estimating the false discovery rate in searching against the concatenated target-decoy spectral library. Several methods have been proposed to construct decoy spectral libraries. Most of them construct decoy peptide sequences and then generate theoretical spectra accordingly. In this paper, we propose a method, called precursor-swap, which directly constructs decoy spectral libraries directly at the "spectrum level" without generating decoy peptide sequences by swapping the precursors of two spectra selected according to a very simple rule. Our spectrum-based method does not require additional efforts to deal with ion types (e.g., a, b or c ions), fragment mechanism (e.g., CID, or ETD), or unannotated peaks, but preserves many spectral properties. The precursor-swap method is evaluated on different spectral libraries and the results of obtained decoy ratios show that it is comparable to other methods. Notably, it is efficient in time and memory usage for constructing decoy libraries. A software tool called Precursor-Swap-Decoy-Generation (PSDG) is publicly available for download at http://ms.iis.sinica.edu.tw/PSDG/.

Tooth fragment reattachment techniques-A systematic review.

PubMed

Garcia, Fernanda Cristina P; Poubel, Déborah L N; Almeida, Júlio César F; Toledo, Isabela P; Poi, Wilson R; Guerra, Eliete N S; Rezende, Liliana V M L

2018-03-07

Several strategies have been developed for tooth fragment reattachment following fracture. Although many techniques have been reported, there is no consensus on which one has the best results in terms of the bond strength between the fragment and the dentin over time. The aim of this study was to assess the currently reported tooth fragment reattachment techniques for fractured crowns of anterior teeth. The PubMed, LILACS, Web of Science, Cochrane, and Scopus databases were searched in October 2016, and the search was updated in February 2017. A search of the gray literature was performed in Google Scholar and OpenGrey. Reference lists of eligible studies were cross-checked to identify additional studies; gray literature and ongoing trials were investigated. Two authors assessed studies to determine inclusion and undertook data extraction. Case reports/series of three or more cases, cross-sectional studies, cohort studies, and in vivo clinical trials in all languages were included. Five articles remained after screening. These studies predominantly reported on fragment reattachment with composite resin and resin cement. There was little consistency among the studies in regard to the technique used for tooth fragment reattachment and length of the follow-up period. According to the evidence found in the studies included in this review, simple tooth fragment reattachment was the preferred reattachment technique. An increase in the bond strength between tooth fragment and dentin was observed when an intermediate material was used. Further investigation is needed, using standard follow-up periods and larger samples. © 2018 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Meteorite Falls and the Fragmentation of Meteorites

NASA Technical Reports Server (NTRS)

Momeni, Daniel

2016-01-01

In order to understand the fragmentation of objects entering the atmosphere and why some produce more fragments than others, I have searched the Meteoritical Society database for meteorites greater than 20 kilograms that fell in the USA, China, and India. I also studied the video and film records of 21 fireballs that produced meteorites. A spreadsheet was prepared that noted smell, fireball, explosion, whistling, rumbling, the number of fragments, light, and impact sounds. Falls with large numbers of fragments were examined to look for common traits. These were: the Norton County aubrite, explosion and a flare greater than 100 fragments; the Forest City H5 chondrite explosion, a flare, a dust trail, 505 specimens; the Richardton H5 chondrite explosion and light, 71 specimens; the Juancheng H5 chondrite explosion, a rumbling, a flare, a dust trail,1000 specimens; the Tagish Lake C2 chondrite explosion, flare, dust trail, 500 specimens. I conclude that fragmentation is governed by the following: (1) Bigger meteors undergo more stress which results in more specimens; (2) Harder meteorites also require more force to break them up which will cause greater fragmentation; (3) Force and pressure are directly proportional during falls. General observations made were; (1) Meteorites produce fireballs sooner due to high friction; (2) Meteors tend to explode as well because of high stress; (3) Softer meteorites tend to cause dust trails; (4) Some falls produce light as they fall at high velocity. I am grateful to NASA Ames for this opportunity and Derek Sears, Katie Bryson, and Dan Ostrowski for discussions.

Atmospheric-pressure ionization and fragmentation of peptides by solution-cathode glow discharge

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schwartz, Andrew J.; Shelley, Jacob T.; Walton, Courtney L.

Modern “-omics” (e.g., proteomics, glycomics, metabolomics, etc.) analyses rely heavily on electrospray ionization and tandem mass spectrometry to determine the structural identity of target species. Unfortunately, these methods are limited to specialized mass spectrometry instrumentation. Here in this paper, a novel approach is described that enables ionization and controlled, tunable fragmentation of peptides at atmospheric pressure. In the new source, a direct-current plasma is sustained between a tapered metal rod and a flowing sample-containing solution. As the liquid stream contacts the electrical discharge, peptides from the solution are volatilized, ionized, and fragmented. At high discharge currents (e.g., 70 mA), electrospray-likemore » spectra are observed, dominated by singly and doubly protonated molecular ions. At lower currents (35 mA), many peptides exhibit extensive fragmentation, with a-, b-, c-, x-, and y-type ion series present as well as complex fragments, such as d-type ions, not previously observed with atmospheric-pressure dissociation. Though the mechanism of fragmentation is currently unclear, observations indicate it could result from the interaction of peptides with gas-phase radicals or ultraviolet radiation generated within the plasma.« less

Atmospheric-pressure ionization and fragmentation of peptides by solution-cathode glow discharge

DOE PAGES

Schwartz, Andrew J.; Shelley, Jacob T.; Walton, Courtney L.; ...

2016-06-27

Modern “-omics” (e.g., proteomics, glycomics, metabolomics, etc.) analyses rely heavily on electrospray ionization and tandem mass spectrometry to determine the structural identity of target species. Unfortunately, these methods are limited to specialized mass spectrometry instrumentation. Here in this paper, a novel approach is described that enables ionization and controlled, tunable fragmentation of peptides at atmospheric pressure. In the new source, a direct-current plasma is sustained between a tapered metal rod and a flowing sample-containing solution. As the liquid stream contacts the electrical discharge, peptides from the solution are volatilized, ionized, and fragmented. At high discharge currents (e.g., 70 mA), electrospray-likemore » spectra are observed, dominated by singly and doubly protonated molecular ions. At lower currents (35 mA), many peptides exhibit extensive fragmentation, with a-, b-, c-, x-, and y-type ion series present as well as complex fragments, such as d-type ions, not previously observed with atmospheric-pressure dissociation. Though the mechanism of fragmentation is currently unclear, observations indicate it could result from the interaction of peptides with gas-phase radicals or ultraviolet radiation generated within the plasma.« less

Universality of fragment shapes.

PubMed

Domokos, Gábor; Kun, Ferenc; Sipos, András Árpád; Szabó, Tímea

2015-03-16

The shape of fragments generated by the breakup of solids is central to a wide variety of problems ranging from the geomorphic evolution of boulders to the accumulation of space debris orbiting Earth. Although the statistics of the mass of fragments has been found to show a universal scaling behavior, the comprehensive characterization of fragment shapes still remained a fundamental challenge. We performed a thorough experimental study of the problem fragmenting various types of materials by slowly proceeding weathering and by rapid breakup due to explosion and hammering. We demonstrate that the shape of fragments obeys an astonishing universality having the same generic evolution with the fragment size irrespective of materials details and loading conditions. There exists a cutoff size below which fragments have an isotropic shape, however, as the size increases an exponential convergence is obtained to a unique elongated form. We show that a discrete stochastic model of fragmentation reproduces both the size and shape of fragments tuning only a single parameter which strengthens the general validity of the scaling laws. The dependence of the probability of the crack plan orientation on the linear extension of fragments proved to be essential for the shape selection mechanism.

FSD: Frequency Space Differential measurement of CMB spectral distortions

NASA Astrophysics Data System (ADS)

Mukherjee, Suvodip; Silk, Joseph; Wandelt, Benjamin D.

2018-07-01

Although the cosmic microwave background (CMB) agrees with a perfect blackbody spectrum within the current experimental limits, it is expected to exhibit certain spectral distortions with known spectral properties. We propose a new method Frequency Space Differential (FSD) to measure the spectral distortions in the CMB spectrum by using the inter-frequency differences of the brightness temperature. The difference between the observed CMB temperature at different frequencies must agree with the frequency derivative of the blackbody spectrum in the absence of any distortion. However, in the presence of spectral distortions, the measured inter-frequency differences would also exhibit deviations from blackbody that can be modelled for known sources of spectral distortions like y and μ. Our technique uses FSD information for the CMB blackbody, y, μ, or any other sources of spectral distortions to model the observed signal. Successful application of this method in future CMB missions can provide an alternative method to extract spectral distortion signals and can potentially make it feasible to measure spectral distortions without an internal blackbody calibrator.

Fragment-to-Lead Medicinal Chemistry Publications in 2015.

PubMed

Johnson, Christopher N; Erlanson, Daniel A; Murray, Christopher W; Rees, David C

2017-01-12

Fragment-based drug discovery (FBDD) is now well-established as a technology for generating new chemical leads and drugs. This Miniperspective provides a tabulated overview of the fragment-to-lead literature published in the year 2015, together with a commentary on trends observed across the FBDD field during this time. It is hoped that this tabulated summary will provide a useful point of reference for both FBDD practitioners and the wider medicinal chemistry community.

Observations of rock spectral classes by the Opportunity rover's Pancam on northern Cape York and on Matijevic Hill, Endeavour Crater, Mars

NASA Astrophysics Data System (ADS)

Farrand, W. H.; Bell, J. F.; Johnson, J. R.; Rice, M. S.; Jolliff, B. L.; Arvidson, R. E.

2014-11-01

The Opportunity rover's exploration of the portion of the rim of Endeavour crater known as Cape York included examination of the sulfate-bearing Grasberg formation and the Matijevic Hill region. Multispectral visible and near-infrared (VNIR) Pancam observations were used to characterize reflectance properties of rock units. Using spectral end-member detection and classification approaches including a principal components/n-dimensional visualization, automatic sequential maximum angle convex cone method, and classification through hierarchical clustering, six main spectral classes of rock surfaces were identified: light-toned veins, Grasberg fm., the smectite-bearing Matijevic formation, the hematitic "blueberry" spherules, resistant spherules within the Matijevic fm. dubbed "newberries," and the Shoemaker formation impact breccia. Some of these could be divided into spectral subclasses. There were three types of veins: veins in the bench unit of Cape York, thinner veins in the Matijevic fm., and boxwork pattern-forming veins. The bench unit veins had higher 535 nm band depths than the other two vein subclasses and a steeper 934 to 1009 nm slope. The Grasberg fm. has VNIR spectral features that are interpreted to indicate higher fractions of red hematite than in the sulfate-bearing Burns Fm. The Matijevic fm. includes both light-toned, fine-grained matrix, and dark-toned veneers. The latter has a weak near-infrared absorption band centered near 950 nm consistent with nontronite. Observations of Rock Abrasion Tool brushed and ground newberries indicated that cuttings from the RAT grind had a longer wavelength reflectance maximum and deeper 535 nm band depth, consistent with more oxidized materials. Greater oxidation of cementing materials in the newberries is consistent with a diagenetic concretion origin.

Preliminary insights into a model for mafic magma fragmentation

NASA Astrophysics Data System (ADS)

Edwards, Matt; Pioli, Laura; Andronico, Daniele; Cristaldi, Antonio; Scollo, Simona

2017-04-01

Fragmentation of mafic magmas remains a poorly understood process despite the common occurrence of low viscosity explosive eruptions. In fact, it has been commonly overlooked based on the assumption that low viscosity magmas have very limited explosivity and low potential to undergo brittle fragmentation. However, it is now known that highly explosive, ash forming eruptions can be relatively frequent at several mafic volcanoes. Three questions arise due to this - What is the specific fragmentation mechanism occuring in these eruptions? What are the primary factors controlling fragmentation efficiency? Can a link between eruption style and fragmentation efficiency be quantified? We addressed these questions by coupling theoretical observations and field analysis of the recent May 2016 eruption at Mount Etna volcano. Within this complex 10-day event three paroxysmal episodes of pulsating basaltic lava jets alternating with small lava flows were recorded from a vent within the Voragine crater. The associated plumes which were produced deposited tephra along narrow axes to the east and south east. Sampling was done on the deposits associated with the first two plumes and the third one. We briefly characterise the May 2016 eruption by assessing plume height, eruption phases, total erupted masses and fallout boundaries and comparing them to previous eruptions. We also analyse the total grainsize distribution (TGSD) of the scoria particles formed in the jets. Conventional methods for obtaining grainsize and total distributions of an eruption are based on mass and provide limited information on fragmentation though. For this reason, the TGSD was assessed by coupling particle analyser data and conventional sieving data to assess both particle size and number of particle distributions with better precision. This allowed for more accurate testing of several existing models describing the shape of the TGSD. Coupled further with observations on eruption dynamics and eruption

Quantitative experimental modelling of fragmentation during explosive volcanism

NASA Astrophysics Data System (ADS)

Thordén Haug, Ø.; Galland, O.; Gisler, G.

2012-04-01

Phreatomagmatic eruptions results from the violent interaction between magma and an external source of water, such as ground water or a lake. This interaction causes fragmentation of the magma and/or the host rock, resulting in coarse-grained (lapilli) to very fine-grained (ash) material. The products of phreatomagmatic explosions are classically described by their fragment size distribution, which commonly follows power laws of exponent D. Such descriptive approach, however, considers the final products only and do not provide information on the dynamics of fragmentation. The aim of this contribution is thus to address the following fundamental questions. What are the physics that govern fragmentation processes? How fragmentation occurs through time? What are the mechanisms that produce power law fragment size distributions? And what are the scaling laws that control the exponent D? To address these questions, we performed a quantitative experimental study. The setup consists of a Hele-Shaw cell filled with a layer of cohesive silica flour, at the base of which a pulse of pressurized air is injected, leading to fragmentation of the layer of flour. The fragmentation process is monitored through time using a high-speed camera. By varying systematically the air pressure (P) and the thickness of the flour layer (h) we observed two morphologies of fragmentation: "lift off" where the silica flour above the injection inlet is ejected upwards, and "channeling" where the air pierces through the layer along sub-vertical conduit. By building a phase diagram, we show that the morphology is controlled by P/dgh, where d is the density of the flour and g is the gravitational acceleration. To quantify the fragmentation process, we developed a Matlab image analysis program, which calculates the number and sizes of the fragments, and so the fragment size distribution, during the experiments. The fragment size distributions are in general described by power law distributions of

Multipurpose spectral imager.

PubMed

Sigernes, F; Lorentzen, D A; Heia, K; Svenøe, T

2000-06-20

A small spectral imaging system is presented that images static or moving objects simultaneously as a function of wavelength. The main physical principle is outlined and demonstrated. The instrument is capable of resolving both spectral and spatial information from targets throughout the entire visible region. The spectral domain has a bandpass of 12 A. One can achieve the spatial domain by rotating the system's front mirror with a high-resolution stepper motor. The spatial resolution range from millimeters to several meters depends mainly on the front optics used and whether the target is fixed (static) or movable relative to the instrument. Different applications and examples are explored, including outdoor landscapes, industrial fish-related targets, and ground-level objects observed in the more traditional way from an airborne carrier (remote sensing). Through the examples, we found that the instrument correctly classifies whether a shrimp is peeled and whether it can disclose the spectral and spatial microcharacteristics of targets such as a fish nematode (parasite). In the macroregime, we were able to distinguish a marine vessel from the surrounding sea and sky. A study of the directional spectral albedo from clouds, mountains, snow cover, and vegetation has also been included. With the airborne experiment, the imager successfully classified snow cover, leads, and new and rafted ice, as seen from 10.000 ft (3.048 m).

Evaluation of the performance of a tandem mass spectral library with mass spectral data extracted from literature.

PubMed

Würtinger, Philipp; Oberacher, Herbert

2012-01-01

MSforID represents a database of tandem mass spectral data obtained from (quasi-)molecular ions produced by atmospheric pressure ionization methods. At the current stage of development the library contains 12 122 spectra of 1208 small (bio-)organic molecules. The present work was aimed to evaluate the performance of the MSforID library in terms of accuracy and transferability with a collection of fragment ion mass spectra from various compounds acquired on multiple instruments. A literature survey was conducted to collect the set of sample spectra. A total number of 554 spectra covering 291 compounds were extracted from 109 publications. The majority of spectra originated from publications on applications of LC/MS/MS in drug monitoring, pharmacokinetics, environmental analysis, forensic analysis as well as food analysis. Almost all types of tandem mass spectrometric instruments distributed by the five most important instrument vendors were included in the study. The overall sensitivity of library search was found to be 96.4%, which clearly proves that the MSforID library can successfully handle data from a huge variety of mass spectrometric instruments to allow accurate compound identification. Only for spectra containing three or more fragment ions, however, the rate of classified matches (= matches with a relative average match probability (ramp) score > 40.0) was 95%. Ambiguous or unclassified results were mainly obtained for searches with single precursor-to-fragment ion transitions due to the insufficient specificity of such a low amount of structural information to unequivocally define a single compound. Copyright © 2011 John Wiley & Sons, Ltd.

Characterizing CDOM Spectral Variability Across Diverse Regions and Spectral Ranges

NASA Astrophysics Data System (ADS)

Grunert, Brice K.; Mouw, Colleen B.; Ciochetto, Audrey B.

2018-01-01

Satellite remote sensing of colored dissolved organic matter (CDOM) has focused on CDOM absorption (aCDOM) at a reference wavelength, as its magnitude provides insight into the underwater light field and large-scale biogeochemical processes. CDOM spectral slope, SCDOM, has been treated as a constant or semiconstant parameter in satellite retrievals of aCDOM despite significant regional and temporal variabilities. SCDOM and other optical metrics provide insights into CDOM composition, processing, food web dynamics, and carbon cycling. To date, much of this work relies on fluorescence techniques or aCDOM in spectral ranges unavailable to current and planned satellite sensors (e.g., <300 nm). In preparation for anticipated future hyperspectral satellite missions, we take the first step here of exploring global variability in SCDOM and fit deviations in the aCDOM spectra using the recently proposed Gaussian decomposition method. From this, we investigate if global variability in retrieved SCDOM and Gaussian components is significant and regionally distinct. We iteratively decreased the spectral range considered and analyzed the number, location, and magnitude of fitted Gaussian components to understand if a reduced spectral range impacts information obtained within a common spectral window. We compared the fitted slope from the Gaussian decomposition method to absorption-based indices that indicate CDOM composition to determine the ability of satellite-derived slope to inform the analysis and modeling of large-scale biogeochemical processes. Finally, we present implications of the observed variability for remote sensing of CDOM characteristics via SCDOM.

Thermal Jeans Fragmentation within ∼1000 au in OMC-1S

NASA Astrophysics Data System (ADS)

Palau, Aina; Zapata, Luis A.; Román-Zúñiga, Carlos G.; Sánchez-Monge, Álvaro; Estalella, Robert; Busquet, Gemma; Girart, Josep M.; Fuente, Asunción; Commerçon, Benoit

2018-03-01

We present subarcsecond 1.3 mm continuum ALMA observations toward the Orion Molecular Cloud 1 South (OMC-1S) region, down to a spatial resolution of 74 au, which reveal a total of 31 continuum sources. We also present subarcsecond 7 mm continuum VLA observations of the same region, which allow further study of fragmentation down to a spatial resolution of 40 au. By applying a method of “mean surface density of companions” we find a characteristic spatial scale at ∼560 au, and we use this spatial scale to define the boundary of 19 “cores” in OMC-1S as groupings of millimeter sources. We find an additional characteristic spatial scale at ∼2800 au, which is the typical scale of the filaments in OMC-1S, suggesting a two-level fragmentation process. We measured the fragmentation level within each core and find a higher fragmentation toward the southern filament. In addition, the cores of the southern filament are also the densest cores (within 1100 au) in OMC-1S. This is fully consistent with previous studies of fragmentation at spatial scales one order of magnitude larger, and suggests that fragmentation down to 40 au seems to be governed by thermal Jeans processes in OMC-1S.

Universality of fragment shapes

PubMed Central

Domokos, Gábor; Kun, Ferenc; Sipos, András Árpád; Szabó, Tímea

2015-01-01

The shape of fragments generated by the breakup of solids is central to a wide variety of problems ranging from the geomorphic evolution of boulders to the accumulation of space debris orbiting Earth. Although the statistics of the mass of fragments has been found to show a universal scaling behavior, the comprehensive characterization of fragment shapes still remained a fundamental challenge. We performed a thorough experimental study of the problem fragmenting various types of materials by slowly proceeding weathering and by rapid breakup due to explosion and hammering. We demonstrate that the shape of fragments obeys an astonishing universality having the same generic evolution with the fragment size irrespective of materials details and loading conditions. There exists a cutoff size below which fragments have an isotropic shape, however, as the size increases an exponential convergence is obtained to a unique elongated form. We show that a discrete stochastic model of fragmentation reproduces both the size and shape of fragments tuning only a single parameter which strengthens the general validity of the scaling laws. The dependence of the probability of the crack plan orientation on the linear extension of fragments proved to be essential for the shape selection mechanism. PMID:25772300

Peptide Fragmentation by Corona Discharge Induced Electrochemical Ionization

PubMed Central

Lloyd, John R.; Hess, Sonja

2010-01-01

Fundamental studies have greatly improved our understanding of electrospray, including the underlying electrochemical reactions. Generally regarded as disadvantageous, we have recently shown that corona discharge (CD) can be used as an effective method to create a radical cation species [M]+•, thus optimizing the electrochemical reactions that occur on the surface of the stainless steel (SS) electrospray capillary tip. This technique is known as CD initiated electrochemical ionization (CD-ECI). Here, we report on the fundamental studies using CD-ECI to induce analytically useful in-source fragmentation of a range of molecules that complex transition metals. Compounds that have been selectively fragmented using CD-ECI include enolate forming phenylglycine containing peptides, glycopeptides, nucleosides and phosphopeptides. Collision induced dissociation (CID) or other activation techniques were not necessary for CD-ECI fragmentation. A four step mechanism was proposed: 1. Complexation using either Fe in the SS capillary tip material or Cu(II) as an offline complexation reagent; 2. Electrochemical oxidation of the complexed metal and thus formation of a radical cation (e.g.; Fe - e− → Fe +•); 3. Radical fragmentation of the complexed compound. 4. Electrospray ionization of the fragmented neutrals. Fragmentation patterns resembling b- and y-type ions were observed and allowed the localization of the phosphorylation sites. PMID:20869880

OSCILLATING FILAMENTS. I. OSCILLATION AND GEOMETRICAL FRAGMENTATION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gritschneder, Matthias; Heigl, Stefan; Burkert, Andreas, E-mail: gritschm@usm.uni-muenchen.de

2017-01-10

We study the stability of filaments in equilibrium between gravity and internal as well as external pressure using the grid-based AMR code RAMSES. A homogeneous, straight cylinder below a critical line mass is marginally stable. However, if the cylinder is bent, such as with a slight sinusoidal perturbation, an otherwise stable configuration starts to oscillate, is triggered into fragmentation, and collapses. This previously unstudied behavior allows a filament to fragment at any given scale, as long as it has slight bends. We call this process “geometrical fragmentation.” In our realization, the spacing between the cores matches the wavelength of the sinusoidalmore » perturbation, whereas up to now, filaments were thought to be only fragmenting on the characteristic scale set by the mass-to-line ratio. Using first principles, we derive the oscillation period as well as the collapse timescale analytically. To enable a direct comparison with observations, we study the line-of-sight velocity for different inclinations. We show that the overall oscillation pattern can hide the infall signature of cores.« less

Heart Rate Fragmentation: A Symbolic Dynamical Approach.

PubMed

Costa, Madalena D; Davis, Roger B; Goldberger, Ary L

2017-01-01

Background: We recently introduced the concept of heart rate fragmentation along with a set of metrics for its quantification. The term was coined to refer to an increase in the percentage of changes in heart rate acceleration sign, a dynamical marker of a type of anomalous variability. The effort was motivated by the observation that fragmentation, which is consistent with the breakdown of the neuroautonomic-electrophysiologic control system of the sino-atrial node, could confound traditional short-term analysis of heart rate variability. Objective: The objectives of this study were to: (1) introduce a symbolic dynamical approach to the problem of quantifying heart rate fragmentation; (2) evaluate how the distribution of the different dynamical patterns ("words") varied with the participants' age in a group of healthy subjects and patients with coronary artery disease (CAD); and (3) quantify the differences in the fragmentation patterns between the two sample populations. Methods: The symbolic dynamical method employed here was based on a ternary map of the increment NN interval time series and on the analysis of the relative frequency of symbolic sequences (words) with a pre-defined set of features. We analyzed annotated, open-access Holter databases of healthy subjects and patients with CAD, provided by the University of Rochester Telemetric and Holter ECG Warehouse (THEW). Results: The degree of fragmentation was significantly higher in older individuals than in their younger counterparts. However, the fragmentation patterns were different in the two sample populations. In healthy subjects, older age was significantly associated with a higher percentage of transitions from acceleration/deceleration to zero acceleration and vice versa (termed "soft" inflection points). In patients with CAD, older age was also significantly associated with higher percentages of frank reversals in heart rate acceleration (transitions from acceleration to deceleration and vice

INSTRUMENTS AND METHODS OF INVESTIGATION: Spectral and spectral-frequency methods of investigating atmosphereless bodies of the Solar system

NASA Astrophysics Data System (ADS)

Busarev, Vladimir V.; Prokof'eva-Mikhailovskaya, Valentina V.; Bochkov, Valerii V.

2007-06-01

A method of reflectance spectrophotometry of atmosphereless bodies of the Solar system, its specificity, and the means of eliminating basic spectral noise are considered. As a development, joining the method of reflectance spectrophotometry with the frequency analysis of observational data series is proposed. The combined spectral-frequency method allows identification of formations with distinctive spectral features, and estimations of their sizes and distribution on the surface of atmospherelss celestial bodies. As applied to investigations of asteroids 21 Lutetia and 4 Vesta, the spectral frequency method has given us the possibility of obtaining fundamentally new information about minor planets.

Least loaded and route fragmentation aware RSA strategies for elastic optical networks

NASA Astrophysics Data System (ADS)

Batham, Deepak; Yadav, Dharmendra Singh; Prakash, Shashi

2017-12-01

Elastic optical networks (EONs) provide flexibility to assign wide range of spectral resources to the connection requests. In this manuscript, we address two issues related to spectrum assignment in EONs: the non uniform spectrum assignment along different links of the route and the spectrum fragmentation in the network. To address these issues, two routing and spectrum assignment (RSA) strategies have been proposed: Least Loaded RSA (LLRSA) and Route Fragmentation Aware RSA (RFARSA). The LLRSA allocates spectrum homogeneously along different links in the network, where as RFARSA accords priority to the routes which are less fragmented. To highlight the salient features of the two strategies, two new metrics, route fragmentation index (RFI) and standard deviation (SD) are introduced. RFI is defined as the ratio of non-contiguous FSs to the total available free FSs on the route, and SD relates to the measure of non-uniformity in the allocation of resources on the links in the network. A simulation program has been developed to evaluate the performance of the proposed (LLRSA and RFARSA) strategies, and the existing strategies of shortest path RSA (SPRSA) and spectrum compactness based defragmentation (SCD) strategies, on the metric of RFI, bandwidth blocking probability (BBP), network capacity utilized, and SD. The variation in the metrics on the basis of number of requests and the bandwidth (number of FSs) requested has been studied. It has been conclusively established that the proposed strategies (LLRSA and RFARSA) outperform the existing strategies in terms of all the metrics.

Fragment size distribution statistics in dynamic fragmentation of laser shock-loaded tin

NASA Astrophysics Data System (ADS)

He, Weihua; Xin, Jianting; Zhao, Yongqiang; Chu, Genbai; Xi, Tao; Shui, Min; Lu, Feng; Gu, Yuqiu

2017-06-01

This work investigates the geometric statistics method to characterize the size distribution of tin fragments produced in the laser shock-loaded dynamic fragmentation process. In the shock experiments, the ejection of the tin sample with etched V-shape groove in the free surface are collected by the soft recovery technique. Subsequently, the produced fragments are automatically detected with the fine post-shot analysis techniques including the X-ray micro-tomography and the improved watershed method. To characterize the size distributions of the fragments, a theoretical random geometric statistics model based on Poisson mixtures is derived for dynamic heterogeneous fragmentation problem, which reveals linear combinational exponential distribution. The experimental data related to fragment size distributions of the laser shock-loaded tin sample are examined with the proposed theoretical model, and its fitting performance is compared with that of other state-of-the-art fragment size distribution models. The comparison results prove that our proposed model can provide far more reasonable fitting result for the laser shock-loaded tin.

Spectral gamuts and spectral gamut mapping

NASA Astrophysics Data System (ADS)

Rosen, Mitchell R.; Derhak, Maxim W.

2006-01-01

All imaging devices have two gamuts: the stimulus gamut and the response gamut. The response gamut of a print engine is typically described in CIE colorimetry units, a system derived to quantify human color response. More fundamental than colorimetric gamuts are spectral gamuts, based on radiance, reflectance or transmittance units. Spectral gamuts depend on the physics of light or on how materials interact with light and do not involve the human's photoreceptor integration or brain processing. Methods for visualizing a spectral gamut raise challenges as do considerations of how to utilize such a data-set for producing superior color reproductions. Recent work has described a transformation of spectra reduced to 6-dimensions called LabPQR. LabPQR was designed as a hybrid space with three explicit colorimetric axes and three additional spectral reconstruction axes. In this paper spectral gamuts are discussed making use of LabPQR. Also, spectral gamut mapping is considered in light of the colorimetric-spectral duality of the LabPQR space.

The observation of spectral variation indicative of porphyrin biomarkers in reflectance spectra of source rock - The application of remote sensing technology to petroleum geochemistry

NASA Technical Reports Server (NTRS)

Holden, Peter Newhall; Gaffey, Michael J.

1990-01-01

The spectral signature of porphyrin compounds, considered to be biomarkers of depositional environment and thermal maturity, have been identified in reflectance spectra of oil shales. The key bands identified, in order of intensity, are the Soret (0.40 microns), alpha (0.57 microns), and beta (0.53 microns) bands. The observed bands represent the composite spectral signature of all porphyrin compounds present in the sample and, therefore, change position and intensity in accordance with changes in porphyrin chemistry.

Herschel observations of extraordinary sources: Analysis of the HIFI 1.2 THz wide spectral survey toward orion KL. I. method

DOE Office of Scientific and Technical Information (OSTI.GOV)

Crockett, Nathan R.; Bergin, Edwin A.; Neill, Justin L.

2014-06-01

We present a comprehensive analysis of a broadband spectral line survey of the Orion Kleinmann-Low nebula (Orion KL), one of the most chemically rich regions in the Galaxy, using the HIFI instrument on board the Herschel Space Observatory. This survey spans a frequency range from 480 to 1907 GHz at a resolution of 1.1 MHz. These observations thus encompass the largest spectral coverage ever obtained toward this high-mass star-forming region in the submillimeter with high spectral resolution and include frequencies >1 THz, where the Earth's atmosphere prevents observations from the ground. In all, we detect emission from 39 molecules (79more » isotopologues). Combining this data set with ground-based millimeter spectroscopy obtained with the IRAM 30 m telescope, we model the molecular emission from the millimeter to the far-IR using the XCLASS program, which assumes local thermodynamic equilibrium (LTE). Several molecules are also modeled with the MADEX non-LTE code. Because of the wide frequency coverage, our models are constrained by transitions over an unprecedented range in excitation energy. A reduced χ{sup 2} analysis indicates that models for most species reproduce the observed emission well. In particular, most complex organics are well fit by LTE implying gas densities are high (>10{sup 6} cm{sup –3}) and excitation temperatures and column densities are well constrained. Molecular abundances are computed using H{sub 2} column densities also derived from the HIFI survey. The distribution of rotation temperatures, T {sub rot}, for molecules detected toward the hot core is significantly wider than the compact ridge, plateau, and extended ridge T {sub rot} distributions, indicating the hot core has the most complex thermal structure.« less

Scaling Laws for Shapes of Food Fragments by Human Mastication

NASA Astrophysics Data System (ADS)

Kobayashi, Naoki; Kohyama, Kaoru; Sasaki, Yo; Matsushita, Mitsugu

2007-04-01

Scaling property of the shape of fragments which were produced by masticating raw carrots has been studied experimentally and theoretically. Mastication experiments showed that most fragments have more or less isotropic shapes which are independent of the number of chewing strokes, whereas larger fragments than a crossover size have complicated shapes. Since the crossover size had the structure which was dependent on the number of chewing strokes, we have tried to propose dynamic scaling hypothesis analogous to the case of growing self-affine interface. It was found that the dynamic scaling yields fairly accurate values of the scaling exponents. Our results will provide a new observation and insight of not only sequential fragmentation but also construction for physiological measurement.

High Spectral Resolution Infrared and Raman Lidar Observations for the ARM Program: Clear and Cloudy Sky Applications

DOE Office of Scientific and Technical Information (OSTI.GOV)

Revercomb, Henry; Tobin, David; Knuteson, Robert

2009-06-17

This grant began with the development of the Atmospheric Emitted Radiance Interferometer (AERI) for ARM. The AERI has provided highly accurate and reliable observations of downwelling spectral radiance (Knuteson et al. 2004a, 2004b) for application to radiative transfer, remote sensing of boundary layer temperature and water vapor, and cloud characterization. One of the major contributions of the ARM program has been its success in improving radiation calculation capabilities for models and remote sensing that evolved from the multi-year, clear-sky spectral radiance comparisons between AERI radiances and line-by-line calculations (Turner et al. 2004). This effort also spurred us to play amore » central role in improving the accuracy of water vapor measurements, again helping ARM lead the way in the community (Turner et al. 2003a, Revercomb et al. 2003). In order to add high-altitude downlooking AERI-like observations over the ARM sites, we began the development of an airborne AERI instrument that has become known as the Scanning High-resolution Interferometer Sounder (Scanning-HIS). This instrument has become an integral part of the ARM Unmanned Aerospace Vehicle (ARM-UAV) program. It provides both a cross-track mapping view of the earth and an uplooking view from the 12-15 km altitude of the Scaled Composites Proteus aircraft when flown over the ARM sites for IOPs. It has successfully participated in the first two legs of the “grand tour” of the ARM sites (SGP and NSA), resulting in a very good comparison with AIRS observations in 2002 and in an especially interesting data set from the arctic during the Mixed-Phase Cloud Experiment (M-PACE) in 2004.« less

Spectral characteristics of Shuttle glow

NASA Technical Reports Server (NTRS)

Viereck, R. A.; Mende, S. B.; Murad, E.; Swenson, G. R.; Pike, C. P.; Culbertson, F. L.; Springer, R. C.

1992-01-01

The glowing cloud near the ram surfaces of the Space Shuttle was observed with a hand-held, intensified spectrograph operated by the astronauts from the aft-flight-deck of the Space Shuttle. The spectral measurements were made between 400 and 800 nm with a resolution of 3 nm. Analysis of the spectral response of the instrument and the transmission of the Shuttle window was performed on orbit using earth-airglow OH Meinel bands. This analysis resulted in a correction of the Shuttle glow intensity in the spectral region between 700 and 800 nm. The data presented in this report is in better agreement with laboratory measurements of the NO2 continuum.

Spectral and fractal analyses of geomagnetic and riometric antarctic observations and a multidimensional index of activity

NASA Astrophysics Data System (ADS)

de Santis, A.; de Franceschi, G.; Perrone, L.

1997-06-01

The Istituto Nazionale di Geofisica under the P.N.R.A. (National Program of Research in Antarctica) has the responsibility of acquiring geophysical observations at the Italian Antarctic Base of Terra Nova Bay. Among others, geomagnetic and riometric data can provide some new insights into local and global activity of the magnetosphere-ionosphere coupling. This article investigates some properties of these kinds of data by means of spectral and fractal analyses. In addition, a multidimensional index is derived from this single-point dataset to represent not only the local but also the global state of the magnetospheric activity.

Steep Decay Phase Shaped by the Curvature Effect. II. Spectral Evolution

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lin, Da-Bin; Mu, Hui-Jun; Lu, Rui-Jing

We derive a simple analytical formula to describe the evolution of spectral index β in the steep decay phase shaped by the curvature effect with the assumption that the spectral parameters and Lorentz factor of the jet shell are the same for different latitudes. Here, the value of β is estimated in the 0.3−10 keV energy band. For a spherical thin shell with a cutoff power-law (CPL) intrinsic radiation spectrum, the spectral evolution can be read as a linear function of observer time. For the situation with the Band function intrinsic radiation spectrum, the spectral evolution may be complex. Ifmore » the observed break energy of the radiation spectrum is larger than 10 keV, the spectral evolution is the same as that shaped by jet shells with a CPL spectrum. If the observed break energy is less than 0.3 keV, the value of β would be a constant. For others, the spectral evolution can be approximated as a logarithmal function of the observer time in general.« less

Spectral feature measurements and analyses of the East Lake

NASA Astrophysics Data System (ADS)

Fang, Shenghui; Zhou, Yuan; Zhu, Wu

2005-10-01

It is one of basis of water color remote sensing to investigate the method to obtain and analyze the spectral features of the water bodies. This paper concerns the above-water method for the spectral measurements of inland water. A series of experiments were taken in areas of the East Lake with the EPP2000CCD radiometer, and the geometry attitude of the observation and the method of the elimination of the noise of the water Signals will be discussed. The method of the above-water spectral measurements was studied from the point of view of error source. On the basis of the experiments of the water depth and the observing direction form the sun and surface, it is suggested to remove the radiances of the whitecaps, surface-reflected sun glint and skylight which have not the spectral features of water from the lake surface by specialized observing attitude and data processing. At last, a suit of methods is concluded for the water body of the East Lake in measuring and analyzing the spectral features from above-water.

Extracellular matrix fragmentation in young, healthy cartilaginous tissues.

PubMed

Craddock, R J; Hodson, N W; Ozols, M; Shearer, T; Hoyland, J A; Sherratt, M J

2018-02-09

Although the composition and structure of cartilaginous tissues is complex, collagen II fibrils and aggrecan are the most abundant assemblies in both articular cartilage (AC) and the nucleus pulposus (NP) of the intervertebral disc (IVD). Whilst structural heterogeneity of intact aggrecan ( containing three globular domains) is well characterised, the extent of aggrecan fragmentation in healthy tissues is poorly defined. Using young, yet skeletally mature (18-30 months), bovine AC and NP tissues, it was shown that, whilst the ultrastructure of intact aggrecan was tissue-dependent, most molecules (AC: 95 %; NP: 99.5 %) were fragmented (lacking one or more globular domains). Fragments were significantly smaller and more structurally heterogeneous in the NP compared with the AC (molecular area; AC: 8543 nm2; NP: 4625 nm2; p < 0.0001). In contrast, fibrillar collagen appeared structurally intact and tissue-invariant. Molecular fragmentation is considered indicative of a pathology; however, these young, skeletally mature tissues were histologically and mechanically (reduced modulus: AC: ≈ 500 kPa; NP: ≈ 80 kPa) comparable to healthy tissues and devoid of notable gelatinase activity (compared with rat dermis). As aggrecan fragmentation was prevalent in neonatal bovine AC (99.5 % fragmented, molecular area: 5137 nm2) as compared with mature AC (95.0 % fragmented, molecular area: 8667 nm2), it was hypothesised that targeted proteolysis might be an adaptive process that modified aggrecan packing (as simulated computationally) and, hence, tissue charge density, mechanical properties and porosity. These observations provided a baseline against which pathological and/or age-related fragmentation of aggrecan could be assessed and suggested that new strategies might be required to engineer constructs that mimic the mechanical properties of native cartilaginous tissues.

Swift Observations of Mrk 421 in Selected Epochs. II. An Extreme Spectral Flux Variability in 2009–2012

NASA Astrophysics Data System (ADS)

Kapanadze, B.; Vercellone, S.; Romano, P.; Hughes, P.; Aller, M.; Aller, H.; Kharshiladze, O.; Tabagari, L.

2018-05-01

We present the results from a detailed spectral and timing study of Mrk 421 based on the rich archival Swift data obtained during 2009–2012. Best fits of the 0.3–10 keV spectra were mostly obtained using the log-parabolic model showing the relatively low spectral curvature that is expected in the case of efficient stochastic acceleration of particles. The position of the synchrotron spectral energy density peak E p of 173 spectra is found at energies higher than 2 keV. The photon index at 1 keV exhibited a very broad range of values a = 1.51–3.02, and very hard spectra with a < 1.7 were observed during the strong X-ray flares, hinting at a possible hadronic jet component. The spectral parameters varied on diverse timescales and showed a correlation in some periods, which is expected in the case of first- and second-order Fermi acceleration. The 0.3–10 keV flux showed strong X-ray flaring activity by a factor of 3–17 on timescales of a few days–weeks between the lowest historical state and that corresponding to a rate higher than 100 cts s‑1. Moreover, 113 instances of intraday variability were revealed, exhibiting shortest flux-doubling/halving times of about 1.2 hr, as well as brightenings by 7%–24% in 180–720 s and declines by 68%–22% in 180–900 s. The X-ray and very high-energy fluxes generally showed a correlated variability, although one incidence of a more complicated variability was also detected, indicating that the multifrequency emission of Mrk 421 could not be generated in a single zone.

Imaging Grating Spectrometer (I-GRASP) for Solar Soft X-Ray Spectral Measurements in Critically Under-Observed 0.5 - 7 nm Spectral Range

NASA Astrophysics Data System (ADS)

Didkovsky, L. V.; Wieman, S. R.; Chao, W.; Woods, T. N.; Jones, A. R.; Thiemann, E.; Mason, J. P.

2016-12-01

We discuss science and technology advantages of the Imaging Grating Spectrometer (I-GRASP) based on a novel transmission diffracting grating (TDG) made possible by technology for fabricating Fresnel zone plates (ZPs) developed at the Lawrence Berkeley National Laboratory (LBNL). Older version TDGs with 200 nm period available in the 1990s became a proven technology for providing 21 years of regular measurements of solar EUV irradiance. I-GRASP incorporates an advanced TDG with a grating period of 50 nm providing four times better diffraction dispersion than the 200 nm period gratings used in the SOHO/CELIAS/SEM, the SDO/EVE/ESP flight spectrophotometers, and the EVE/SAM sounding rocket channel. Such new technology for the TDG combined with a back-illuminated 2000 x 1504 CMOS image sensor with 7 micron pixels, will provide spatially-and-spectrally resolved images and spectra from individual Active Regions (ARs) and solar flares with high (0.15 nm) spectral resolution. Such measurements are not available in the spectral band from about 2 to 6 nm from existing or planned spectrographs and will be significantly important to study ARs and solar flare temperatures and dynamics, to improve existing spectral models, e.g. CHIANTI, and to better understand processes in the Earth's atmosphere processes. To test this novel technology, we have proposed to the NASA LCAS program an I-GRASP version for a sounding rocket flight to increase the TDG TRL to a level appropriate for future CubeSat projects.

September epsilon Perseid cluster as a result of orbital fragmentation

NASA Astrophysics Data System (ADS)

Koten, P.; Čapek, D.; Spurný, P.; Vaubaillon, J.; Popek, M.; Shrbený, L.

2017-04-01

Context. A bright fireball was observed above the Czech Republic on September 9, 2016, at 23:06:59 UT. Moreover, the video cameras at two different stations recorded eight fainter meteors flying on parallel atmospheric trajectories within less than 2 s. All the meteors belong to the September epsilon Perseid meteor shower. The measured proximity of all meteors during a very low activity meteor shower suggests that a cluster of meteors was observed. Aims: The goal of the paper is first to determine whether this event was a random occurrence or a real meteor cluster and second, if it was a cluster, to determine the epoch and at what distance from the Earth the separation of the particles occurred. Methods: The atmospheric trajectories of the observed meteors, masses, and relative distances of individual particles were determined using a double-station observation. According to the distances and masses of the particles, the most probable distance and time of fragmentation is determined. Results: The observed group of meteors is interpreted as the result of the orbital fragmentation of a bigger meteoroid. The fragmentation happened no earlier than 2 or 3 days before the encounter with the Earth at a distance smaller than 0.08 AU from the Earth.

Energy release estimation for fragmenting meteoroid

NASA Astrophysics Data System (ADS)

Egorova, L. A.; Lokhin, V. V.

2018-05-01

It is known that for the adequate interpretation of fireball observations it is necessary to take into account its fragmentation in the Earth's atmosphere. Various models for large cosmic body destruction in the atmosphere are known. Presented work continues our previous research on the fragmentation of fireballs. Proposing a model for the destruction of a fireball we also submit a model for the transition of its kinetic energy to thermal one. The meteoroid destruction under consideration is similar to the destruction of a solid body during an explosion. The kinetic energy of the moving particles of the crashing meteoric body transform into the thermal energy of the gas volume in which their motion occurs.

Posterior epidural disc fragment masquerading as spinal tumor: Review of the literature.

PubMed

Park, Taejune; Lee, Ho Jun; Kim, Jae Seong; Nam, Kiyeun

2018-03-09

Posterior epidural lumbar disc fragment is infrequent because of anatomical barriers, and it is difficult to diagnose posterior epidural lumbar disc fragment because of its rare incidence and the ambiguity of radiologic evaluations. And it is difficult to differentiate it from other diseases such as spinal tumors. Differential diagnosis of posterior epidural lumbar disc fragment is clinically important because its diagnosis can affect treatment and prognosis. To investigate the incidence, anatomical concern, etiology, symptom, diagnostic tool, management and prognosis of posterior epidural lumbar disc fragment, we reviewed articles including case report. We performed a search of all clinical studies of posterior epidural lumbar disc fragment published to date. The following keywords were searched: Posterior epidural lumbar disc fragment, disc migration, posterior epidural disc, extradural migration, dorsal epidural migration, sequestrated disc, and disc fragment. We identified 40 patients of posterior epidural lumbar disc fragment from 28 studies. The most common presentation of posterior epidural lumbar disc fragment was sudden onset radiculopathy (70.0%), followed by cauda equina syndrome (27.5%). The most frequently used diagnostic modality was magnetic resonance imaging (MRI), conducted in 36 cases (90.0%), and followed by computed tomography in 14 cases (35.0%). After the imaging studies, the preoperative diagnoses were 45.0% masses, 20.0% lesions, and 12.5% tumors. Characteristic MRI findings in posterior epidural lumbar disc fragment are helpful for diagnosis; it typically displays low signals on T1-weighted images and high signals on T2-weighted images with respect to the parent disc. In addition, most of the disc fragments show peripheral rim enhancement on MRI with gadolinium administration. Electrodiagnostic testing is useful for verifying nerve damage. Surgical treatment was performed in all cases, and neurologic complications were observed in 12.5%. As

Quantum control of molecular fragmentation in strong laser fields

NASA Astrophysics Data System (ADS)

Zohrabi, Mohammad

Present advances in laser technology allow the production of ultrashort (<˜5 fs, approaching single cycle at 800 nm), intense tabletop laser pulses. At these high intensities laser-matter interactions cannot be described with perturbation theory since multiphoton processes are involved. This is in contrast to photodissociation by the absorption of a single photon, which is well described by perturbation theory. For example, at high intensities (<˜5x1013 W/cm2) the fragmentation of molecular hydrogen ions has been observed via the absorption of three or more photons. In another example, an intriguing dissociation mechanism has been observed where molecular hydrogen ions seem to fragment by apparently absorbing no photons. This is actually a two photon process, photoabsorption followed by stimulated emission, resulting in low energy fragments. We are interested in exploring these kinds of multiphoton processes. Our research group has studied the dynamics and control of fragmentation induced by strong laser fields in a variety of molecular targets. The main goal is to provide a basic understanding of fragmentation mechanisms and possible control schemes of benchmark systems such as H2+. This knowledge is further extended to more complex systems like the benchmark H3+ polyatomic and other molecules. In this dissertation, we report research based on two types of experiments. In the first part, we describe laser-induced fragmentation of molecular ion-beam targets. In the latter part, we discuss the formation of highly-excited neutral fragments from hydrogen molecules using ultrashort laser pulses. In carrying out these experiments, we have also extended experimental techniques beyond their previous capabilities. We have performed a few experiments to advance our understanding of laser-induced fragmentation of molecular-ion beams. For instance, we explored vibrationally resolved spectra of O2+ dissociation using various wavelengths. We observed a vibrational suppression

In vitro pepsin resistance of proteins: Effect of non-reduced SDS-PAGE analysis on fragment observation.

PubMed

Pickles, Juliette; Rafiq, Samera; Cochrane, Stella A; Lalljie, Anja

2014-01-01

The introduction of novel proteins to food products carries with it the need to assess the potential allergenicity of such materials. Resistance to in vitro pepsin digestion is one parameter considered in such a risk assessment using a weight of evidence approach; however, the methodology used to investigate this has not been fully standardised. In vitro pepsin resistance assays typically involve SDS-PAGE performed under reducing conditions, with limited published data available on the assay using non-reducing conditions despite the need to consider non-reducing analysis techniques having been highlighted by regulatory bodies such as the European Food Safety Authority (EFSA). The purpose of the work reported here was to investigate the applicability of (and additional insight provided by) non-reducing analyses, by digesting a set of proteins using a ring-trial validated method, with analysis by SDS-PAGE under both reducing and non-reducing conditions. In silico prediction of digest fragments was also investigated. Significant differences were observed between results under reduced and non-reduced conditions for proteins in which disulphide bonds have a major role in protein structure, such as ribulose 1,5-diphosphate carboxylase (RUBISCO) and bovine serum albumin. For proteins with no or few disulphide bonds, no significant differences were seen in the results. Structural information such as disulphide bond numbers and positions should be considered during experimental design, as a non-reduced approach may be appropriate for some proteins. The in silico approach was a useful tool to suggest potential digest fragments, however the predictions were not always confirmed in vitro and should be considered a guide only.

Several twilight bolides over Kiev in 2013-2015 - fragments of comets nuclei

NASA Astrophysics Data System (ADS)

Churyumov, K. I.; Steklov, A. F.; Vidmachenko, A. P.; Dashkiev, G. N.

2016-06-01

During the short period of our observations (from March 2013 to 2015), was fixed falling at least a dozen fragments of cometary nuclei, at least five of sufficiently large and dozens of smaller fragments of meteoroids. The results of our observations also showed that during the morning and evening twilight over Kiev clearly visible the plume of aerosols of technical nature from the plants, factories and other production facilities.

Measurement Techniques for Hypervelocity Impact Test Fragments

NASA Technical Reports Server (NTRS)

Hill, Nicole E.

2008-01-01

The ability to classify the size and shape of individual orbital debris fragments provides a better understanding of the orbital debris environment as a whole. The characterization of breakup fragmentation debris has gradually evolved from a simplistic, spherical assumption towards that of describing debris in terms of size, material, and shape parameters. One of the goals of the NASA Orbital Debris Program Office is to develop high-accuracy techniques to measure these parameters and apply them to orbital debris observations. Measurement of the physical characteristics of debris resulting from groundbased, hypervelocity impact testing provides insight into the shapes and sizes of debris produced from potential impacts in orbit. Current techniques for measuring these ground-test fragments require determination of dimensions based upon visual judgment. This leads to reduced accuracy and provides little or no repeatability for the measurements. With the common goal of mitigating these error sources, allaying any misunderstandings, and moving forward in fragment shape determination, the NASA Orbital Debris Program Office recently began using a computerized measurement system. The goal of using these new techniques is to improve knowledge of the relation between commonly used dimensions and overall shape. The immediate objective is to scan a single fragment, measure its size and shape properties, and import the fragment into a program that renders a 3D model that adequately demonstrates how the object could appear in orbit. This information would then be used to aid optical methods in orbital debris shape determination. This paper provides a description of the measurement techniques used in this initiative and shows results of this work. The tradeoffs of the computerized methods are discussed, as well as the means of repeatability in the measurements of these fragments. This paper serves as a general description of methods for the measurement and shape analysis of

Impact of habitat fragmentation on tsetse populations and trypanosomosis risk in Eastern Zambia.

PubMed

Mweempwa, Cornelius; Marcotty, Tanguy; De Pus, Claudia; Penzhorn, Barend Louis; Dicko, Ahmadou Hamady; Bouyer, Jérémy; De Deken, Reginald

2015-08-04

Fragmentation of tsetse habitat in eastern Zambia is largely due to encroachments by subsistence farmers into new areas in search of new agricultural land. The impact of habitat fragmentation on tsetse populations is not clearly understood. This study was aimed at establishing the impact of habitat fragmentation on physiological and demographic parameters of tsetse flies in order to enhance the understanding of the relationship between fragmentation and African animal trypanosomosis (AAT) risk. A longitudinal study was conducted to establish the age structure, abundance, proportion of females and trypanosome infection rate of Glossina morsitans morsitans Westwood (Diptera: Glossinidae) in areas of varying degrees of habitat fragmentation in Eastern Zambia. Black screen fly rounds were used to sample tsetse populations monthly for 1 year. Logistic regression was used to analyse age, proportion of females and infection rate data. Flies got significantly older as fragmentation increased (p < 0.004). The proportion of old flies, i.e. above ovarian category four, increased significantly (P < 0.001) from 25.9% (CI 21.4-31.1) at the least fragmented site (Lusandwa) to 74.2% (CI 56.8-86.3) at the highly fragmented site (Chisulo). In the most fragmented area (Kasamanda), tsetse flies had almost disappeared. In the highly fragmented area a significantly higher trypanosome infection rate in tsetse (P < 0.001) than in areas with lower fragmentation was observed. Consequently a comparatively high trypanosomosis incidence rate in livestock was observed there despite lower tsetse density (p < 0.001). The overall proportion of captured female flies increased significantly (P < 0.005) as fragmentation reduced. The proportion increased from 0.135 (CI 0.10-0.18) to 0.285 (CI 0.26-0.31) at the highly and least fragmented sites, respectively. Habitat fragmentation creates conditions to which tsetse populations respond physiologically and demographically thereby

Cryobiology of coral fragments.

PubMed

Hagedorn, Mary; Farrell, Ann; Carter, Virginia L

2013-02-01

Around the world, coral reefs are dying due to human influences, and saving habitat alone may not stop this destruction. This investigation focused on the biological processes that will provide the first steps in understanding the cryobiology of whole coral fragments. Coral fragments are a partnership of coral tissue and endosymbiotic algae, Symbiodinium sp., commonly called zooxanthellae. These data reflected their separate sensitivities to chilling and a cryoprotectant (dimethyl sulfoxide) for the coral Pocillopora damicornis, as measured by tissue loss and Pulse Amplitude Modulated fluorometry 3weeks post-treatment. Five cryoprotectant treatments maintained the viability of the coral tissue and zooxanthellae at control values (1M dimethyl sulfoxide at 1.0, 1.5 and 2.0h exposures, and 1.5M dimethyl sulfoxide at 1.0 and 1.5h exposures, P>0.05, ANOVA), whereas 2M concentrations did not (P<0.05, ANOVA). A seasonal response to chilling was observed in the coral tissue, but not in the zooxanthellae. During the winter when the fragments were chilled, the coral tissue remained relatively intact (∼25% loss) post-treatment, but the zooxanthellae numbers in the tissue declined after 5min of chilling (P<0.05, ANOVA). However, in the late spring, coral tissue (∼75% loss) and zooxanthellae numbers declined in response to chilling alone (P<0.05, ANOVA). When a cryoprotectant (1M dimethyl sulfoxide) was used in concert with chilling it protected the coral against tissue loss after 45min of cryoprotectant exposure (P>0.05, ANOVA), but it did not protect against the loss of zooxanthellae (P<0.05, ANOVA). The zooxanthellae are the most sensitive element in the coral fragment complex and future cryopreservation protocols must be guided by their greater sensitivity. Copyright © 2012 Elsevier Inc. All rights reserved.

Water cluster fragmentation probed by pickup experiments

NASA Astrophysics Data System (ADS)

Huang, Chuanfu; Kresin, Vitaly V.; Pysanenko, Andriy; Fárník, Michal

2016-09-01

Electron ionization is a common tool for the mass spectrometry of atomic and molecular clusters. Any cluster can be ionized efficiently by sufficiently energetic electrons, but concomitant fragmentation can seriously obstruct the goal of size-resolved detection. We present a new general method to assess the original neutral population of the cluster beam. Clusters undergo a sticking collision with a molecule from a crossed beam, and the velocities of neat and doped cluster ion peaks are measured and compared. By making use of longitudinal momentum conservation, one can reconstruct the sizes of the neutral precursors. Here this method is applied to H2O and D2O clusters in the detected ion size range of 3-10. It is found that water clusters do fragment significantly upon electron impact: the deduced neutral precursor size is ˜3-5 times larger than the observed cluster ions. This conclusion agrees with beam size characterization by another experimental technique: photoionization after Na-doping. Abundant post-ionization fragmentation of water clusters must therefore be an important factor in the interpretation of experimental data; interestingly, there is at present no detailed microscopic understanding of the underlying fragmentation dynamics.

Causes of fragmented crystals in ignimbrites: a case study of the Cardones ignimbrite, Northern Chile

NASA Astrophysics Data System (ADS)

van Zalinge, M. E.; Cashman, K. V.; Sparks, R. S. J.

2018-03-01

Broken crystals have been documented in many large-volume caldera-forming ignimbrites and can help to understand the role of crystal fragmentation in both eruption and compaction processes, the latter generally overlooked in the literature. This study investigates the origin of fragmented crystals in the > 1260 km3, crystal-rich Cardones ignimbrites located in the Central Andes. Observations of fragmented crystals in non-welded pumice clasts indicate that primary fragmentation includes extensive crystal breakage and an associated ca. 5 vol% expansion of individual crystals while preserving their original shapes. These observations are consistent with the hypothesis that crystals fragment in a brittle response to rapid decompression associated with the eruption. Additionally, we observe that the extent of crystal fragmentation increases with increasing stratigraphic depth in the ignimbrite, recording secondary crystal fragmentation during welding and compaction. Secondary crystal fragmentation aids welding and compaction in two ways. First, enhanced crystal fragmentation at crystal-crystal contacts accommodates compaction along the principal axis of stress. Second, rotation and displacement of individual crystal fragments enhances lateral flow in the direction(s) of least principal stress. This process increases crystal aspect ratios and forms textures that resemble mantled porphyroclasts in shear zones, indicating lateral flow adds to processes of compaction and welding alongside bubble collapse. In the Cardones ignimbrite, secondary fragmentation commences at depths of 175-250 m (lithostatic pressures 4-6 MPa), and is modulated by both the overlying crystal load and the time spent above the glass transition temperature. Under these conditions, the existence of force-chains can produce stresses at crystal-crystal contacts of a few times the lithostatic pressure. We suggest that documenting crystal textures, in addition to conventional welding parameters, can

Shape Distribution of Fragments from Microsatellite Impact Tests

NASA Technical Reports Server (NTRS)

Liou, J.C.; Hanada, T.

2009-01-01

Fragment shape is an important factor for conducting reliable orbital debris damage assessments for critical space assets, such as the International Space Station. To date, seven microsatellite impact tests have been completed as part of an ongoing collaboration between Kyushu University and the NASA Orbital Debris Program Office. The target satellites ranged in size from 15 cm 15 cm 15 cm to 20 cm 20 cm 20 cm. Each target satellite was equipped with fully functional electronics, including circuits, battery, and transmitter. Solar panels and multi-layer insulation (MLI) were added to the target satellites of the last two tests. The impact tests were carried out with projectiles of different sizes and impact speeds. All fragments down to about 2 mm in size were collected and analyzed based on their three orthogonal dimensions, x, y, and z, where x is the longest dimension, y is the longest dimension in the plane perpendicular to x, and z is the longest dimension perpendicular to both x and y. Each fragment was also photographed and classified by shape and material composition. This data set serves as the basis of our effort to develop a fragment shape distribution. Two distinct groups can be observed in the x/y versus y/z distribution of the fragments. Objects in the first group typically have large x/y values. Many of them are needle-like objects originating from the fragmentation of carbon fiber reinforced plastic materials used to construct the satellites. Objects in the second group tend to have small x/y values, and many of them are box-like or plate-like objects, depending on their y/z values. Each group forms the corresponding peak in the x/y distribution. However, only one peak can be observed in the y/z distribution. These distributions and how they vary with size, material type, and impact parameters will be described in detail within the paper.

Understanding the Long-Term Spectral Variability of Cygnus X-1 with Burst and Transient Source Experiment and All-Sky Monitor Observations

NASA Technical Reports Server (NTRS)

Zdziarski, Andrzej A.; Poutanen, Juri; Paciesas, William S.; Wen, Lin-Qing

2002-01-01

We present a comprehensive analysis of all observations of Cyg X-1 by the Compton Gamma Ray Observatory Burst and Transient Source Experiment (BATSE; 20-300 keV) and by the Rossi X-Ray Timing Explorer all-sky monitor (ASM; 1.5-12 keV) until 2002 June, including approximately 1200 days of simultaneous data. We find a number of correlations between fluxes and hardnesses in different energy bands. In the hard (low) spectral state, there is a negative correlation between the ASM 1.5-12 keV flux and the hardness at any energy. In the soft (high) spectral state, the ASM flux is positively correlated with the ASM hardness but uncorrelated with the BATSE hardness. In both spectral states, the BATSE hardness correlates with the flux above 100 keV, while it shows no correlation with the 20-100 keV flux. At the same time, there is clear correlation between the BATSE fluxes below and above 100 keV. In the hard state, most of the variability can be explained by softening the overall spectrum with a pivot at approximately 50 keV. There is also another, independent variability pattern of lower amplitude where the spectral shape does not change when the luminosity changes. In the soft state, the variability is mostly caused by a variable hard (Comptonized) spectral component of a constant shape superposed on a constant soft blackbody component. These variability patterns are in agreement with the dependencies of the rms variability on the photon energy in the two states. We also study in detail recent soft states from late 2000 until 2002. The last of them has lasted thus far for more than 200 days. Their spectra are generally harder in the 1.5-5 keV band and similar or softer in the 3-12 keV band than the spectra of the 1996 soft state, whereas the rms variability is stronger in all the ASM bands. On the other hand, the 1994 soft state transition observed by BATSE appears very similar to the 1996 one. We interpret the variability patterns in terms of theoretical Comptonization

Behavior of fragmentation front in a porous viscoelastic material

NASA Astrophysics Data System (ADS)

Ichihara, M.; Takayama, K.

2002-12-01

We are developing laboratory experiments to investigate dynamics of magma fragmentation during explosive volcanic eruptions. Fragmentation of such a mixture as magma consisting of viscoelastic melt, bubbles and solid particles, is not known yet, and experiments are necessary to establish a mathematical model. It has been shown that viscoelastic silicone compound (Dow Corning 3179) is a useful analogous material to simulate magma fragmentation. In the previous work, a porous specimen made of the compound was rapidly decompressed and development of brittle fragmentation was observed. However, there were arguments that the experiment was different from actual processes which produce fragments as small as volcanic ash, because in the experiment the specimen was broken into only several pieces. This time, results of the improved experiments are presented. The experimental apparatus is a kind of a vertical shock tube, which mainly consists of a high pressure test section and low pressure chambers. The test section is made of acrylic tube of which inner diameter is 25 mm. The internal phenomenon is recorded by a high-speed video camera. Pressure is measured in the gas above and beneath the specimen by piezoelectric transducers. The specimen is prepared in the following way. First, an acrylic tube filled with the compound is put in a nitrogen tank and kept at 45 bar for more than 8 hours. The compound absorbs the gas and equilibrates with the nitrogen. Next, the tank is decompressed back to the atmospheric pressure slowly. Nitrogen exsolves and bubbles are formed in the compound quite uniformly. Finally, the expanded compound sticking out of both ends of the tube is cut down, and the tube containing the specimen is attached to the shock tube. The specimen is rapidly decompressed by 24, 16, and 8 bars. The high-speed video images demonstrate a sequence of the fragmentation process. We observe propagation of a clear fracture front at 50 m/s for 24 bar of decompression and at

Adaptation to spectrally-rotated speech.

PubMed

Green, Tim; Rosen, Stuart; Faulkner, Andrew; Paterson, Ruth

2013-08-01

Much recent interest surrounds listeners' abilities to adapt to various transformations that distort speech. An extreme example is spectral rotation, in which the spectrum of low-pass filtered speech is inverted around a center frequency (2 kHz here). Spectral shape and its dynamics are completely altered, rendering speech virtually unintelligible initially. However, intonation, rhythm, and contrasts in periodicity and aperiodicity are largely unaffected. Four normal hearing adults underwent 6 h of training with spectrally-rotated speech using Continuous Discourse Tracking. They and an untrained control group completed pre- and post-training speech perception tests, for which talkers differed from the training talker. Significantly improved recognition of spectrally-rotated sentences was observed for trained, but not untrained, participants. However, there were no significant improvements in the identification of medial vowels in /bVd/ syllables or intervocalic consonants. Additional tests were performed with speech materials manipulated so as to isolate the contribution of various speech features. These showed that preserving intonational contrasts did not contribute to the comprehension of spectrally-rotated speech after training, and suggested that improvements involved adaptation to altered spectral shape and dynamics, rather than just learning to focus on speech features relatively unaffected by the transformation.

Backreaction effects on nonequilibrium spectral function

NASA Astrophysics Data System (ADS)

Mendizabal, Sebastián; Rojas, Juan Cristobal

2017-07-01

We show how to compute the spectral function for a scalar theory in two different scenarios: one which disregards backreaction, i.e. the response of the environment to the external particle, and the other one where backreaction is considered. The calculation was performed using the Kadanoff-Baym equation through the Keldysh formalism. When backreaction is neglected, the spectral function is equal to the equilibrium one, which can be represented as a Breit-Wigner distribution. When backreaction is introduced we observed a damping in the spectral function of the thermal bath. Such behavior modifies the damping rate for particles created within the bath.

Submillimeter, millimeter, and microwave spectral line catalogue

NASA Technical Reports Server (NTRS)

Poynter, R. L.; Pickett, H. M.

1980-01-01

A computer accessible catalogue of submillimeter, millimeter, and microwave spectral lines in the frequency range between O and 3000 GHz (such as; wavelengths longer than 100 m) is discussed. The catalogue was used as a planning guide and as an aid in the identification and analysis of observed spectral lines. The information listed for each spectral line includes the frequency and its estimated error, the intensity, lower state energy, and quantum number assignment. The catalogue was constructed by using theoretical least squares fits of published spectral lines to accepted molecular models. The associated predictions and their estimated errors are based upon the resultant fitted parameters and their covariances.

Detecting Weak Spectral Lines in Interferometric Data through Matched Filtering

NASA Astrophysics Data System (ADS)

Loomis, Ryan A.; Öberg, Karin I.; Andrews, Sean M.; Walsh, Catherine; Czekala, Ian; Huang, Jane; Rosenfeld, Katherine A.

2018-04-01

Modern radio interferometers enable observations of spectral lines with unprecedented spatial resolution and sensitivity. In spite of these technical advances, many lines of interest are still at best weakly detected and therefore necessitate detection and analysis techniques specialized for the low signal-to-noise ratio (S/N) regime. Matched filters can leverage knowledge of the source structure and kinematics to increase sensitivity of spectral line observations. Application of the filter in the native Fourier domain improves S/N while simultaneously avoiding the computational cost and ambiguities associated with imaging, making matched filtering a fast and robust method for weak spectral line detection. We demonstrate how an approximate matched filter can be constructed from a previously observed line or from a model of the source, and we show how this filter can be used to robustly infer a detection significance for weak spectral lines. When applied to ALMA Cycle 2 observations of CH3OH in the protoplanetary disk around TW Hya, the technique yields a ≈53% S/N boost over aperture-based spectral extraction methods, and we show that an even higher boost will be achieved for observations at higher spatial resolution. A Python-based open-source implementation of this technique is available under the MIT license at http://github.com/AstroChem/VISIBLE.

Chromatographic and mass spectral methods of identification for the side-chain and ring regioisomers of methylenedioxymethamphetamine.

PubMed

Aalberg, L; DeRuiter, J; Noggle, F T; Sippola, E; Clark, C R

2000-08-01

The popular drug of abuse 3,4-methylenedioxymethamphetamine (MDMA) is one of a total of 10 regioisomeric 2,3- and 3,4-methylenedioxyphenethylamines of MW 193 that yields regioisomeric fragment ions with equivalent mass (m/z 58 and 135/136) in the electron-impact (EI) mass spectrum. Thus, these 10 methylenedioxyphenethylamines are uniquely isomeric; they have the same molecular weight and equivalent major fragments in their mass spectra. The specific identification of one of these compounds (i.e., Ecstasy or 3,4-MDMA) in a forensic drug sample depends upon the analyst's ability to eliminate the other regioisomers as possible interfering or coeluting substances. This study reports the synthesis, chemical properties, spectral characterization, and chromatographic analysis of these 10 unique regioisomers. The ten 2,3- and 3,4-regioisomers of MDMA are synthesized from commercially available precursor chemicals. In the EI mass spectra, the side-chain regioisomers show some variation in the relative intensity of the major ions, with the exception of only one or two minor ions that might be considered side-chain specific fragments. The position of substitution for the methylenedioxy ring is not easily determined by mass spectral techniques, and the ultimate identification of any one of these amines with the elimination of the other nine must depend heavily upon chromatographic methods. The chromatographic separation of these 10 uniquely regioisomeric amines are studied using reversed-phase liquid chromatographic methods with gradient elution and gas chromatographic techniques with temperature program optimization.

Fragmentation, Fusion, and Genetic Homogeneity in a Calcareous Sponge (Porifera, Calcarea).

PubMed

Padua, André; Leocorny, Pedro; Custódio, Márcio Reis; Klautau, Michelle

2016-06-01

Sessile marine invertebrates living on hard substrata usually present strategies such as size variations, longer life spans, fragmentation and fusion to occupy and compete for space. Calcareous sponges are usually small and short-lived, and some species are known to undergo frequent fragmentation and fusion events. However, whether fusion occurs only between genetically identical individuals remains unclear. We investigated the occurrence of chimaeras in the calcareous sponge Clathrina aurea by following the dynamics of fragmentation and fusion of 66 individuals in the field for up to 18 months and determined size variations and the life span of each individual. Microsatellites were used to determine whether fusion events occur among genetically different individuals. Growth and shrinkage of individuals were frequently observed, showing that size cannot be associated with age in C. aurea. The life span of the species ranged from 1 to 16 months (mean: 4.7 months). Short life spans and variable growth rates have been observed in other species of the class Calcarea. Fragmentation and fusion events were observed, but fusion events always occurred between genetically identical individuals, as has been suggested by graft experiments in adult Demospongiae and other Calcarea. These results suggest that at least C. aurea adults may have some mechanism to avoid chimaerism. © 2016 Wiley Periodicals, Inc.

Design of multivariable feedback control systems via spectral assignment using reduced-order models and reduced-order observers

NASA Technical Reports Server (NTRS)

Mielke, R. R.; Tung, L. J.; Carraway, P. I., III

1984-01-01

The feasibility of using reduced order models and reduced order observers with eigenvalue/eigenvector assignment procedures is investigated. A review of spectral assignment synthesis procedures is presented. Then, a reduced order model which retains essential system characteristics is formulated. A constant state feedback matrix which assigns desired closed loop eigenvalues and approximates specified closed loop eigenvectors is calculated for the reduced order model. It is shown that the eigenvalue and eigenvector assignments made in the reduced order system are retained when the feedback matrix is implemented about the full order system. In addition, those modes and associated eigenvectors which are not included in the reduced order model remain unchanged in the closed loop full order system. The full state feedback design is then implemented by using a reduced order observer. It is shown that the eigenvalue and eigenvector assignments of the closed loop full order system rmain unchanged when a reduced order observer is used. The design procedure is illustrated by an actual design problem.

Design of multivariable feedback control systems via spectral assignment using reduced-order models and reduced-order observers

NASA Technical Reports Server (NTRS)

Mielke, R. R.; Tung, L. J.; Carraway, P. I., III

1985-01-01

The feasibility of using reduced order models and reduced order observers with eigenvalue/eigenvector assignment procedures is investigated. A review of spectral assignment synthesis procedures is presented. Then, a reduced order model which retains essential system characteristics is formulated. A constant state feedback matrix which assigns desired closed loop eigenvalues and approximates specified closed loop eigenvectors is calculated for the reduced order model. It is shown that the eigenvalue and eigenvector assignments made in the reduced order system are retained when the feedback matrix is implemented about the full order system. In addition, those modes and associated eigenvectors which are not included in the reduced order model remain unchanged in the closed loop full order system. The fulll state feedback design is then implemented by using a reduced order observer. It is shown that the eigenvalue and eigenvector assignments of the closed loop full order system remain unchanged when a reduced order observer is used. The design procedure is illustrated by an actual design problem.

Scaling laws for impact fragmentation of spherical solids.

PubMed

Timár, G; Kun, F; Carmona, H A; Herrmann, H J

2012-07-01

We investigate the impact fragmentation of spherical solid bodies made of heterogeneous brittle materials by means of a discrete element model. Computer simulations are carried out for four different system sizes varying the impact velocity in a broad range. We perform a finite size scaling analysis to determine the critical exponents of the damage-fragmentation phase transition and deduce scaling relations in terms of radius R and impact velocity v(0). The scaling analysis demonstrates that the exponent of the power law distributed fragment mass does not depend on the impact velocity; the apparent change of the exponent predicted by recent simulations can be attributed to the shifting cutoff and to the existence of unbreakable discrete units. Our calculations reveal that the characteristic time scale of the breakup process has a power law dependence on the impact speed and on the distance from the critical speed in the damaged and fragmented states, respectively. The total amount of damage is found to have a similar behavior, which is substantially different from the logarithmic dependence on the impact velocity observed in two dimensions.

Fragment capture device

DOE Office of Scientific and Technical Information (OSTI.GOV)

Payne, Lloyd R.; Cole, David L.

2010-03-30

A fragment capture device for use in explosive containment. The device comprises an assembly of at least two rows of bars positioned to eliminate line-of-sight trajectories between the generation point of fragments and a surrounding containment vessel or asset. The device comprises an array of at least two rows of bars, wherein each row is staggered with respect to the adjacent row, and wherein a lateral dimension of each bar and a relative position of each bar in combination provides blockage of a straight-line passage of a solid fragment through the adjacent rows of bars, wherein a generation point ofmore » the solid fragment is located within a cavity at least partially enclosed by the array of bars.« less

Fragment capture device

DOEpatents

Payne, Lloyd R.; Cole, David L.

2010-03-30

A fragment capture device for use in explosive containment. The device comprises an assembly of at least two rows of bars positioned to eliminate line-of-sight trajectories between the generation point of fragments and a surrounding containment vessel or asset. The device comprises an array of at least two rows of bars, wherein each row is staggered with respect to the adjacent row, and wherein a lateral dimension of each bar and a relative position of each bar in combination provides blockage of a straight-line passage of a solid fragment through the adjacent rows of bars, wherein a generation point of the solid fragment is located within a cavity at least partially enclosed by the array of bars.

Natural-product-derived fragments for fragment-based ligand discovery

NASA Astrophysics Data System (ADS)

Over, Björn; Wetzel, Stefan; Grütter, Christian; Nakai, Yasushi; Renner, Steffen; Rauh, Daniel; Waldmann, Herbert

2013-01-01

Fragment-based ligand and drug discovery predominantly employs sp2-rich compounds covering well-explored regions of chemical space. Despite the ease with which such fragments can be coupled, this focus on flat compounds is widely cited as contributing to the attrition rate of the drug discovery process. In contrast, biologically validated natural products are rich in stereogenic centres and populate areas of chemical space not occupied by average synthetic molecules. Here, we have analysed more than 180,000 natural product structures to arrive at 2,000 clusters of natural-product-derived fragments with high structural diversity, which resemble natural scaffolds and are rich in sp3-configured centres. The structures of the cluster centres differ from previously explored fragment libraries, but for nearly half of the clusters representative members are commercially available. We validate their usefulness for the discovery of novel ligand and inhibitor types by means of protein X-ray crystallography and the identification of novel stabilizers of inactive conformations of p38α MAP kinase and of inhibitors of several phosphatases.

In-Source Fragmentation and the Sources of Partially Tryptic Peptides in Shotgun Proteomics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kim, Jong-Seo; Monroe, Matthew E.; Camp, David G.

2013-02-01

Partially tryptic peptides are often identified in shotgun proteomics using trypsin as the proteolytic enzyme; however, it has been controversial regarding the sources of such partially tryptic peptides. Herein we investigate the impact of in-source fragmentation on shotgun proteomics using three biological samples, including a standard protein mixture, a mouse brain tissue homogenate, and a mouse plasma sample. Since the in-source fragments of a peptide retain the same elution time with its parent fully tryptic peptide, the partially tryptic peptides from in-source fragmentation can be distinguished from the other partially tryptic peptides by plotting the observed retention times against themore » computationally predicted retention times. Most partially tryptic in-source fragmentation artifacts were misaligned from the linear distribution of fully tryptic peptides. The impact of in-source fragmentation on peptide identifications was clearly significant in a less complex sample such as a standard protein digest, where ~60 % of unique peptides were observed as partially tryptic peptides from in-source fragmentation. In mouse brain or mouse plasma samples, in-source fragmentation contributed to 1-3 % of all identified peptides. The other major source of partially tryptic peptides in complex biological samples is presumably proteolytic processing by endogenous proteases in the samples. By filtering out the in-source fragmentation artifacts from the identified partially tryptic or non-tryptic peptides, it is possible to directly survey in-vivo proteolytic processing in biological samples such as blood plasma.« less

High speed observation of fragment impact initiation of nitromethane charges

NASA Astrophysics Data System (ADS)

Cook, M. D.; Haskins, P. J.; Briggs, R. I.; Cheese, P.; Stennett, C.; Fellows, J.

2000-04-01

Ultra high-speed digital photography has been used to record the onset and build-up of reaction in nitromethane charges that have been impacted by steel fragments. The nitromethane charges were housed in PMMA cylinders and back-lit using conventional flash bulbs. Flat plates of aluminum were glued to one end of the cylinder and PMMA plates to the other. The completed charge was positioned to allow normal impact of the projectiles through the aluminum barrier plate. The events were filmed using an Imacon 468, ultra high-speed digital image system, capable of framing at up to 100 million pictures per second. Using this system it was possible to record detailed photographic information concerning the onset and growth of reaction due to shock initiation of the nitromethane charges. The results obtained to date are consistent with the established concepts for initiation of homogeneous and heterogeneous materials.

The Problem of Spectral Mimicry of Supergiants

NASA Astrophysics Data System (ADS)

Klochkova, V. G.; Chentsov, E. L.

2018-01-01

The phenomenon of spectral mimicry refers to the fact that hypergiants and post-AGB supergiants—stars of different masses in fundamentally different stages of their evolution—have similar optical spectra, and also share certain other characteristics (unstable extended atmospheres, expanding dust-gas envelopes, high IR excesses). As a consequence, it is not always possible to distinguish post-AGB stars from hypergiants based on individual spectral observations in the optical. Examples of spectral mimicry are analyzed using uniform, high-quality spectral material obtained on the 6-m telescope of the Special Astrophysical Observatory in the course of long-term monitoring of high-luminosity stars. It is shown that unambiguously resolving the mimicry problem for individual stars requires the determination of a whole set of parameters: luminosity, wind parameters, spectral energy distribution, spectral features, velocity field in the atmosphere and circumstellar medium, behavior of the parameters with time, and the chemical composition of the atmosphere.

Characterizing DebriSat Fragments: So Many Fragments, So Much Data, and So Little Time

NASA Technical Reports Server (NTRS)

Shiotani, B.; Rivero, M.; Carrasquilla, M.; Allen, S.; Fitz-Coy, N.; Liou, J.-C.; Huynh, T.; Sorge, M.; Cowardin, H.; Opiela, J.;

Spectral domain optical coherence tomography imaging of spectacular ecdysis in the royal python (Python regius).

PubMed

Tusler, Charlotte A; Maggs, David J; Kass, Philip H; Paul-Murphy, Joanne R; Schwab, Ivan R; Murphy, Christopher J

2015-01-01

To describe using spectral domain optical coherence tomography (SD-OCT), digital slit-lamp biomicroscopy, and external photography, changes in the ophidian cuticle, spectacle, and cornea during ecdysis. Four normal royal pythons (Python regius). Snakes were assessed once daily throughout a complete shed cycle using nasal, axial, and temporal SD-OCT images, digital slit-lamp biomicroscopy, and external photography. Spectral domain optical coherence tomography (SD-OCT) images reliably showed the spectacular cuticle and stroma, subcuticular space (SCS), cornea, anterior chamber, iris, and Schlemm's canal. When visible, the subspectacular space (SSS) was more distended peripherally than axially. Ocular surface changes throughout ecdysis were relatively conserved among snakes at all three regions imaged. From baseline (7 days following completion of a full cycle), the spectacle gradually thickened before separating into superficial cuticular and deep, hyper-reflective stromal components, thereby creating the SCS. During spectacular separation, the stroma regained original reflectivity, and multiple hyper-reflective foci (likely fragments from the cuticular-stromal interface) were noted within the SCS. The cornea was relatively unchanged in character or thickness throughout all stages of ecdysis. Slit-lamp images did not permit observation of these changes. Spectral domain optical coherence tomography (SD-OCT) provided excellent high-resolution images of the snake anterior segment, and especially the cuticle, spectacle, and cornea of manually restrained normal snakes at all stages of ecdysis and warrants investigation in snakes with anterior segment disease. The peripheral spectacle may be the preferred entry point for diagnostic or therapeutic injections into the SSS and for initiating spectacular surgery. © 2014 American College of Veterinary Ophthalmologists.

Io’s volcanoes at high spatial, spectral, and temporal resolution from ground-based observations

NASA Astrophysics Data System (ADS)

de Kleer, Katherine R.; de Pater, Imke

2017-10-01

Io’s dynamic volcanic eruptions provide a laboratory for studying large-scale volcanism on a body vastly different from Earth, and for unraveling the connections between tidal heating and the geological activity it powers. Ground-based near-infrared observatories allow for high-cadence, long-time-baseline observing programs using diverse instrumentation, and yield new information into the nature and variability of this activity. I will summarize results from four years of ground-based observations of Io’s volcanism, including: (1) A multi-year cadence observing campaign using adaptive optics on 8-10 meter telescopes, which places constraints on tidal heating models through sampling the spatial distribution of Io’s volcanic heat flow, and provides estimates of the occurrence rate of Io’s most energetic eruptions; (2) High-spectral-resolution (R~25,000) studies of Io’s volcanic SO gas emission at 1.7 microns, which resolves this rovibronic line into its different branches, and thus contains detailed information on the temperature and thermal state of the gas; and (3) The highest-spatial-resolution map ever produced of the entire Loki Patera, a 20,000 km2 volcanic feature on Io, derived from adaptive-optics observations of an occultation of Io by Europa. The map achieves a spatial resolution of ~10 km and indicates compositional differences across the patera. These datasets both reveal specific characteristics of Io’s individual eruptions, and provide clues into the sub-surface systems connecting Io’s tidally-heated interior to its surface expressions of volcanism.

Basophile: Accurate Fragment Charge State Prediction Improves Peptide Identification Rates

DOE PAGES

Wang, Dong; Dasari, Surendra; Chambers, Matthew C.; ...

2013-03-07

In shotgun proteomics, database search algorithms rely on fragmentation models to predict fragment ions that should be observed for a given peptide sequence. The most widely used strategy (Naive model) is oversimplified, cleaving all peptide bonds with equal probability to produce fragments of all charges below that of the precursor ion. More accurate models, based on fragmentation simulation, are too computationally intensive for on-the-fly use in database search algorithms. We have created an ordinal-regression-based model called Basophile that takes fragment size and basic residue distribution into account when determining the charge retention during CID/higher-energy collision induced dissociation (HCD) of chargedmore » peptides. This model improves the accuracy of predictions by reducing the number of unnecessary fragments that are routinely predicted for highly-charged precursors. Basophile increased the identification rates by 26% (on average) over the Naive model, when analyzing triply-charged precursors from ion trap data. Basophile achieves simplicity and speed by solving the prediction problem with an ordinal regression equation, which can be incorporated into any database search software for shotgun proteomic identification.« less

Evaluating the capabilities of vegetation spectral indices on chlorophyll content estimation at Sentinel-2 spectral resolutions

NASA Astrophysics Data System (ADS)

Sun, Qi; Jiao, Quanjun; Dai, Huayang

2018-03-01

Chlorophyll is an important pigment in green plants for photosynthesis and obtaining the energy for growth and development. The rapid, nondestructive and accurate estimation of chlorophyll content is significant for understanding the crops growth, monitoring the disease and insect, and assessing the yield of crops. Sentinel-2 equipped with the Multi-Spectral Instrument (MSI), which will provide images with high spatial, spectral and temporal resolution. It covers the VNIR/SWIR spectral region in 13 bands and incorporates two new spectral bands in the red-edge region and a spatial resolution of 20nm, which can be used to derive vegetation indices using red-edge bands. In this paper, we will focus on assessing the potential of vegetation spectral indices for retrieving chlorophyll content from Sentinel-2 at different angles. Subsequently, we used in-situ spectral data and Sentinel-2 data to test the relationship between VIs and chlorophyll content. The REP, MTCI, CIred-edge, CIgreen, Macc01, TCARI/OSAVI [705,750], NDRE1 and NDRE2 were calculated. NDRE2 index displays a strongly similar result for hyperspectral and simulated Sentinel-2 spectral bands (R2 =0.53, R2 =0.51, for hyperspectral and Sentinel-2, respectively). At different observation angles, NDRE2 has the smallest difference in performance (R2 = 0.51, R2 =0.64, at 0° and 15° , respectively).

A solar burst with a spectral component observed only above 100 GHz during an M class flare

NASA Astrophysics Data System (ADS)

Cristiani, G.; Giménez de Castro, C. G.; Mandrini, C. H.; Machado, M. E.; Silva, I. De Benedetto E.; Kaufmann, P.; Rovira, M. G.

2008-12-01

Context: Since the installation of submillimeter solar radio telescopes, a new spectral burst component was discovered at frequencies above 100 GHz, creating the THz burst category. In all the reported cases, the events were X-class flares and the THz component was increasing. Aims: We report for the first time an M class flare that shows a different submillimeter radio spectral component from the microwave classical burst. Two successive bursts of 2 min duration and separated by 2 min occurred in active region NOAA 10226, starting around 13:15 UT and having an M 6.8 maximum intensity in soft X-rays. Methods: Submillimeter flux density measured by the Solar Submillimeter Telescope (SST) is used, in addition to microwave total Sun patrol telescope observations. Images with Hα filters, from the Hα Solar Telescope for Argentina (HASTA), and extreme UV observations, from the Extreme-ultraviolet Imaging Telescope (EIT) aboard the Solar and Heliospheric Observatory (SoHO), are used to characterize the flaring region. An extensive analysis of the magnetic topology evolution is derived from the Michelson Doppler Imager (SoHO, MDI) magnetograms and used to constrain the solution space of the possible emission mechanisms. Results: The submillimeter component is only observed at 212 GHz. We have upper limits for the emission at 89.4 and 405 GHz, which are less than the observed flux density at 212 GHz. The analysis of the magnetic topology reveals a very compact and complex system of arches that reconnects at low heights, while from the soft X-ray observations we deduce that the flaring area is dense (n ˜ 1012 cm-3). The reconnected arches are anchored in regions with magnetic field intensity differing by an order of magnitude. Accordingly, we conclude that the microwave emission comes from mildly relativistic electrons spiraling down along the reconnected loops. A very small portion of the accelerated electrons can reach the footpoint with the stronger magnetic field

Habitat fragmentation effects on the orchid bee communities in remnant forests of southeastern Brazil.

PubMed

Knoll, Fátima do Rosário Naschenveng; Penatti, N C

2012-10-01

The effect of habitat fragmentation on the structure of orchid bee communities was analyzed by the investigation of the existence of a spatial structure in the richness and abundance of Euglossini species and by determining the relationship between these data and environmental factors. The surveys were carried out in four different forest fragments and one university campus. Richness, abundance, and diversity of species were analyzed in relation to abiotic (size of the area, extent of the perimeter, perimeter/area ratio, and shape index) and biotic characteristics (vegetation index of the fragment and of the matrix of each of the locations studied). We observed a highly significant positive correlation between the diversity index and the vegetation index of the fragment, landscape and shape index. Our analysis demonstrated that the observed variation could be explained mainly by the vegetation index and the size of the fragment. Variations in relative abundance showed a tendency toward an aggregated spatial distribution between the fragments studied, as well as between the sampling stations within the same habitat, demonstrating the existence of a spatial structure on a small scale in the populations of Euglossini. This distribution will determine the composition of species that coexist in the area after fragmentation. These data help in understanding the differences and similarities in the structure of communities of Euglossini resulting from forest fragmentation.

Polymerization of ethylene through reversible addition-fragmentation chain transfer (RAFT).

PubMed

Dommanget, Cédric; D'Agosto, Franck; Monteil, Vincent

2014-06-23

The present paper reports the first example of a controlled radical polymerization of ethylene using reversible addition-fragmentation chain transfer (RAFT) in the presence of xanthates (Alkyl-OC(=S)S-R) as controlling agents under relative mild conditions (70 °C, <200 bars). The specific reactivity of the produced alkyl-type propagating radicals induces a side fragmentation reaction of the stabilizing O-alkyl Z group of the controlling agents. This fragmentation, rarely observed in RAFT, was proven by NMR analyses. In addition, semicrystalline copolymers of ethylene and vinyl acetate were also prepared with a similar level of control. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Fragmentation of an elastica

NASA Astrophysics Data System (ADS)

Vandenberghe, Nicolas; Villermaux, Emmanuel

2009-03-01

When a thin rod is submitted to an axial force greater than its critical buckling load it takes the shape of an elastica. As the load further increases, a rod made of a brittle material breaks suddenly. More than two fragments may be formed during this fragmentation. In this work we discuss the sequence of events that lead to the final broken state with two or more fragments. We show that the criterion for breaking is not trivial. In particular, we investigate the effect of the duration of the loading and we show that at a given load the waiting time before breaking is broadly distributed. We discuss the consequences of the time delayed breaking on the distributions of fragment sizes and fragment numbers.

FERMI Observations of GRB 090902B: A Distinct Spectral Component in the Prompt and Delayed Emission

DOE PAGES

Abdo, A. A.; Ackermann, M.; Ajello, M.; ...

2009-11-03

Here, we report on the observation of the bright, long gamma-ray burst (GRB), GRB 090902B, by the Gamma-ray Burst Monitor (GBM) and Large Area Telescope (LAT) instruments on-board the Fermi observatory. This was one of the brightest GRBs to have been observed by the LAT, which detected several hundred photons during the prompt phase. With a redshift of z = 1.822, this burst is among the most luminous detected by Fermi. Time-resolved spectral analysis reveals a significant power-law component in the LAT data that is distinct from the usual Band model emission that is seen in the sub-MeV energy range.more » This power-law component appears to extrapolate from the GeV range to the lowest energies and is more intense than the Band component, both below ~50 keV and above 100 MeV. The Band component undergoes substantial spectral evolution over the entire course of the burst, while the photon index of the power-law component remains constant for most of the prompt phase, then hardens significantly toward the end. After the prompt phase, power-law emission persists in the LAT data as late as 1 ks post-trigger, with its flux declining as t –1.5. The LAT detected a photon with the highest energy so far measured from a GRB, 33.4 +2.7 –3.5 GeV. This event arrived 82 s after the GBM trigger and ~50 s after the prompt phase emission had ended in the GBM band. In conclusion, we discuss the implications of these results for models of GRB emission and for constraints on models of the extragalactic background light.« less

High Spectral Resolution SOFIA/EXES Observations of C2H2 toward Orion IRc2

NASA Astrophysics Data System (ADS)

Rangwala, Naseem; Colgan, Sean W. J.; Le Gal, Romane; Acharyya, Kinsuk; Huang, Xinchuan; Lee, Timothy J.; Herbst, Eric; deWitt, Curtis; Richter, Matt; Boogert, Adwin; McKelvey, Mark

2018-03-01

We present high spectral resolution observations from 12.96 to 13.33 microns toward Orion IRc2 using the mid-infrared spectrograph, Echelon-Cross-Echelle Spectrograph (EXES), at Stratospheric Observatory for Infrared Astronomy (SOFIA). These observations probe the physical and chemical conditions of the Orion hot core, which is sampled by a bright, compact, mid-infrared background continuum source in the region, IRc2. All 10 of the rovibrational C2H2 transitions expected in our spectral coverage are detected with high signal-to-noise ratios (S/Ns), yielding continuous coverage of the R-branch lines from J = 9–8 to J = 18–17, including both ortho and para species. Eight of these rovibrational transitions are newly reported detections. The isotopologue, 13CCH2, is clearly detected with a high S/N. This enabled a direct measurement of the 12C/13C isotopic ratio for the Orion hot core of 14 ± 1 and an estimated maximum value of 21. We also detected several HCN rovibrational lines. The ortho and para C2H2 ladders are clearly separate, and tracing two different temperatures, 226 K and 164 K, respectively, with a non-equilibrium ortho to para ratio (OPR) of 1.7 ± 0.1. Additionally, the ortho and para V LSR values differ by about 1.8 ± 0.2 km s‑1, while the mean line widths differ by 0.7 ± 0.2 km s‑1, suggesting that these species are not uniformly mixed along the line of sight to IRc2. We propose that the abnormally low C2H2 OPR could be a remnant from an earlier, colder phase, before the density enhancement (now the hot core) was impacted by shocks generated from an explosive event 500 years ago.

VNIR spectral features observed by the Mars Exploration Rover Opportunity in hematite-bearing materials at Meridiani Planum

NASA Astrophysics Data System (ADS)

Farrand, W. H.; Bell, J. F.; Morris, R. V.; Joliff, B. L.; Squyres, S. W.; Souza, P. A.

2004-12-01

The Mars Exploration Rover Opportunity was sent to Meridiani Planum based largely on MGS TES spectroscopic evidence of a large surface exposure of coarse grained gray hematite. The presence of hematite at Meridiani Planum has been confirmed through thermal infrared spectroscopy by the rover's Mini-TES instrument and by in-situ measurements by its Moessbauer (MB) spectrometer. Several types of hematite, as expressed by differences in MB spectral parameters, have been associated with various rocks and soils examined in Eagle crater and on the surrounding plains. The host materials include the small spherules (informally known as "blueberries") littering the floor of Eagle crater and the plains of Meridiani, the outcrop rock itself, specific types of soils, and two measurements on unique rocks in the Shoemaker's Patio area of Eagle crater. At the visible to near infrared (VNIR) wavelengths covered by the rover's multispectral Panoramic camera (Pancam), gray hematite is spectrally neutral. However, multispectral observations by Pancam of some of these hematite-bearing materials show discernable spectral features. Specifically, portions of the outcrop visible in the walls of Eagle crater display a strong 535 nm absorption feature. This feature resembles a similar feature in laboratory spectra of red hematite, but the characteristic 860 nm absorption of red hematite is either absent or is instead replaced by a longer wavelength absorption centered on Pancam's 900 nm channel. The blueberries display a deep and broad absorption centered on 900 nm and as well as an increase in reflectance in the 1009 nm band. The shape of the absorption feature in the blueberries is consistent with that seen in red hematite, but again the band minimum is displaced to a longer wavelength than would be expected for red hematite. The blueberries also lack the prominent absorption at the shortest wavelengths that would be expected of red hematite. The unique hematite-bearing (or coated) rocks

Stochastic Simulation of Actin Dynamics Reveals the Role of Annealing and Fragmentation

PubMed Central

Fass, Joseph; Pak, Chi; Bamburg, James; Mogilner, Alex

2008-01-01

Recent observations of F-actin dynamics call for theoretical models to interpret and understand the quantitative data. A number of existing models rely on simplifications and do not take into account F-actin fragmentation and annealing. We use Gillespie’s algorithm for stochastic simulations of the F-actin dynamics including fragmentation and annealing. The simulations vividly illustrate that fragmentation and annealing have little influence on the shape of the polymerization curve and on nucleotide profiles within filaments but drastically affect the F-actin length distribution, making it exponential. We find that recent surprising measurements of high length diffusivity at the critical concentration cannot be explained by fragmentation and annealing events unless both fragmentation rates and frequency of undetected fragmentation and annealing events are greater than previously thought. The simulations compare well with experimentally measured actin polymerization data and lend additional support to a number of existing theoretical models. PMID:18279896

Study the fragment size distribution in dynamic fragmentation of laser shock loding tin

NASA Astrophysics Data System (ADS)

He, Weihua; Xin, Jianting; Chu, Genbai; Shui, Min; Xi, Tao; Zhao, Yongqiang; Gu, Yuqiu

2017-06-01

Characterizing the distribution of fragment size produced from dynamic fragmentation process is very important for fundamental science like predicting material dymanic response performance and for a variety of engineering applications. However, only a few data about fragment mass or size have been obtained due to its great challenge in its dynamic measurement. This paper would focus on investigating the fragment size distribution from the dynamic fragmentation of laser shock-loaded metal. Material ejection of tin sample with wedge shape groove in the free surface is collected with soft recovery technique. Via fine post-shot analysis techniques including X-ray micro-tomography and the improved watershed method, it is found that fragments can be well detected. To characterize their size distributions, a random geometric statistics method based on Poisson mixtures was derived for dynamic heterogeneous fragmentation problem, which leads to a linear combinational exponential distribution. Finally we examined the size distribution of laser shock-loaded tin with the derived model, and provided comparisons with other state-of-art models. The resulting comparisons prove that our proposed model can provide more reasonable fitting result for laser shock-loaded metal.

Effects of habitat fragmentation on wild mammal infection by Trypanosoma cruzi.

PubMed

Vaz, V C; D'Andrea, P S; Jansen, A M

2007-11-01

Expansion of human activities frequently results in habitat fragmentation, a phenomenon that has been widely recognized in the last decades as one of the major threats to world's biodiversity. The transformation of a continuous forest into a fragmented area results in a hyper-dynamic landscape with unpredictable consequences to overall ecosystem health. The effect of the fragmentation process on Trypanosoma cruzi infection among small wild mammals was studied in an Atlantic Rain Forest landscape. Comparing continous forest to fragmented habitat, marsupials were less abundant than rodents in the continuous landscape. An overall decrease in small wild mammal richness was observed in the smaller fragments. An anti-T. cruzi seroprevalence of 18% (82/440) was deteced by immunofluorescence assay. Moreover, this seroprevalence was higher in the fragmented habitat than in the continuous forest. According to the collected data, 3 main factors seem to modulate infection by T. cruzi in small wild mammals: (i) habitat fragmentation; (ii) biodiversity loss; (iii) increase of marsupial abundance in mammal communities. Furthermore, an extremely mild controlled infection by T. cruzi was detected since no patent parasitaemia could be detected in fresh blood samples, and no parasites were isolated by haemoculture.

In situ end labeling of fragmented DNA in induced ovarian atresia.

PubMed

D'Herde, K; De Pestel, G; Roels, F

1994-01-01

Apoptosis is studied in a model of induced follicular atresia in the ovary of Japanese quail (Coturnix coturnix japonica) by in situ end labeling of DNA fragments in granulosa cells using two different techniques (incorporation of labeled nucleotides by DNA polymerase I or terminal deoxynucleotidyl transferase). The most remarkable observation related to apoptosis in this model is the predominant cytoplasmic localization of labeled DNA fragments, while DNA fragmentation appears to be absent from compacted chromatin masses of apoptotic nuclei and apoptotic nuclear fragments. Unstained apoptotic bodies are present adjacent to stained ones, so that their detection rate on hematoxylin + eosin stained sections is better than on the in situ end-labeled sections. This suggests that DNA fragmentation is a late even or not obligatory in apoptotic granulosa cell death. In contrast to similar studies on atretic granulosa in mammalian models, the process of apoptosis is asynchronous in the granulosal epithelium, with a majority of nuclei with normal chromatin configuration remaining negative for DNA fragmentation. Finally it is shown that the techniques used are not specific for apoptosis, as DNA fragmentation in necrotic granulosa cells is detected as well.

Large scale meta-analysis of fragment-based screening campaigns: privileged fragments and complementary technologies.

PubMed

Kutchukian, Peter S; Wassermann, Anne Mai; Lindvall, Mika K; Wright, S Kirk; Ottl, Johannes; Jacob, Jaison; Scheufler, Clemens; Marzinzik, Andreas; Brooijmans, Natasja; Glick, Meir

2015-06-01

A first step in fragment-based drug discovery (FBDD) often entails a fragment-based screen (FBS) to identify fragment "hits." However, the integration of conflicting results from orthogonal screens remains a challenge. Here we present a meta-analysis of 35 fragment-based campaigns at Novartis, which employed a generic 1400-fragment library against diverse target families using various biophysical and biochemical techniques. By statistically interrogating the multidimensional FBS data, we sought to investigate three questions: (1) What makes a fragment amenable for FBS? (2) How do hits from different fragment screening technologies and target classes compare with each other? (3) What is the best way to pair FBS assay technologies? In doing so, we identified substructures that were privileged for specific target classes, as well as fragments that were privileged for authentic activity against many targets. We also revealed some of the discrepancies between technologies. Finally, we uncovered a simple rule of thumb in screening strategy: when choosing two technologies for a campaign, pairing a biochemical and biophysical screen tends to yield the greatest coverage of authentic hits. © 2014 Society for Laboratory Automation and Screening.

Rapid spectral and flux time variations in a solar burst observed at various dm-mm wavelengths and at hard X-rays

NASA Technical Reports Server (NTRS)

Zodivaz, A. M.; Kaufmann, P.; Correia, E.; Costa, J. E. R.; Takakura, T.; Cliver, E. W.; Tapping, K. F.

1986-01-01

A solar burst was observed with high sensitivity and time resolution at cm-mm wavelengths by two different radio observatories (Itapetinga and Algonquin), with high spectral time resolution at dm-mm wavelengths by patrol instruments (Sagamore Hill), and at hard X-rays (HXM Hinotori). At the onset of the major burst time structure there was a rapid rise in the spectral turnover frequency (from 5 to 15 GHz), in about 10s, coincident to a reduction of the spectral index in the optically thin part of the spectrum. The burst maxima were not time coincident at the optically thin radio frequencies and at the different hard X-ray energy ranges. The profiles at higher radio frequencies exhibited better time coincidence to the high energy X-rays. The hardest X-ray spectrum (-3) coincided with peak radio emission at the higher frequency (44 GHz). The event appeared to be built up by a first major injection of softer particles followed by other injections of harder particles. Ultrafast time structures were identified as superimposed on the burst emission at the cm-mm high sensitivity data at X-rays, with predominant repetition rates ranging from 2.0 to 3.5 Hz.

Gun Testing Ballistics Issues for Insensitive Munitions Fragment Impact Testing

NASA Astrophysics Data System (ADS)

Baker, Ernest; Schultz, Emmanuel; NATO Munitions Safety Information Analysis Centre Team

2017-06-01

The STANAG 4496 Ed. 1 Fragment Impact, Munitions Test Procedure is normally conducted by gun launching a projectile for attack against a munition. The purpose of this test is to assess the reaction of a munition impacted by a fragment. The test specifies a standardized projectile (fragment) with a standard test velocity of 2530+/-90 m/s, or an alternate test velocity of 1830+/-60 m/s. The standard test velocity can be challenging to achieve and has several loosely defined and undefined characteristics that can affect the test item response. This publication documents the results of an international review of the STANAG 4496 related to the fragment impact test. To perform the review, MSIAC created a questionnaire in conjunction with the custodian of this STANAG and sent it to test centers. Fragment velocity variation, projectile tilt upon impact and aim point variation were identified as observed gun testing issues. Achieving 2530 m/s consistently and cost effectively can be challenging. The aim point of impact of the fragment is chosen with the objective of obtaining the most violent reaction. No tolerance for aim point is specified, although aim point variation can be a source for IM response variation. Fragment tilt on impact is also unspecified. The standard fragment fabricated from a variety of different steels which have a significant margin for mechanical properties. These, as well as other gun testing issues, have significant implications to resulting IM response.

Propagating annotations of molecular networks using in silico fragmentation

PubMed Central

da Silva, Ricardo R.; Wang, Mingxun; Fox, Evan; Balunas, Marcy J.; Klassen, Jonathan L.; Dorrestein, Pieter C.

2018-01-01

The annotation of small molecules is one of the most challenging and important steps in untargeted mass spectrometry analysis, as most of our biological interpretations rely on structural annotations. Molecular networking has emerged as a structured way to organize and mine data from untargeted tandem mass spectrometry (MS/MS) experiments and has been widely applied to propagate annotations. However, propagation is done through manual inspection of MS/MS spectra connected in the spectral networks and is only possible when a reference library spectrum is available. One of the alternative approaches used to annotate an unknown fragmentation mass spectrum is through the use of in silico predictions. One of the challenges of in silico annotation is the uncertainty around the correct structure among the predicted candidate lists. Here we show how molecular networking can be used to improve the accuracy of in silico predictions through propagation of structural annotations, even when there is no match to a MS/MS spectrum in spectral libraries. This is accomplished through creating a network consensus of re-ranked structural candidates using the molecular network topology and structural similarity to improve in silico annotations. The Network Annotation Propagation (NAP) tool is accessible through the GNPS web-platform https://gnps.ucsd.edu/ProteoSAFe/static/gnps-theoretical.jsp. PMID:29668671

Propagating annotations of molecular networks using in silico fragmentation.

PubMed

da Silva, Ricardo R; Wang, Mingxun; Nothias, Louis-Félix; van der Hooft, Justin J J; Caraballo-Rodríguez, Andrés Mauricio; Fox, Evan; Balunas, Marcy J; Klassen, Jonathan L; Lopes, Norberto Peporine; Dorrestein, Pieter C

2018-04-01

The annotation of small molecules is one of the most challenging and important steps in untargeted mass spectrometry analysis, as most of our biological interpretations rely on structural annotations. Molecular networking has emerged as a structured way to organize and mine data from untargeted tandem mass spectrometry (MS/MS) experiments and has been widely applied to propagate annotations. However, propagation is done through manual inspection of MS/MS spectra connected in the spectral networks and is only possible when a reference library spectrum is available. One of the alternative approaches used to annotate an unknown fragmentation mass spectrum is through the use of in silico predictions. One of the challenges of in silico annotation is the uncertainty around the correct structure among the predicted candidate lists. Here we show how molecular networking can be used to improve the accuracy of in silico predictions through propagation of structural annotations, even when there is no match to a MS/MS spectrum in spectral libraries. This is accomplished through creating a network consensus of re-ranked structural candidates using the molecular network topology and structural similarity to improve in silico annotations. The Network Annotation Propagation (NAP) tool is accessible through the GNPS web-platform https://gnps.ucsd.edu/ProteoSAFe/static/gnps-theoretical.jsp.

Spectral analysis of amazon canopy phenology during the dry season using a tower hyperspectral camera and modis observations

DOE Office of Scientific and Technical Information (OSTI.GOV)

de Moura, Yhasmin Mendes; Galvão, Lênio Soares; Hilker, Thomas

The association between spectral reflectance and canopy processes remains challenging for quantifying large-scale canopy phenological cycles in tropical forests. In this paper, we used a tower-mounted hyperspectral camera in an eastern Amazon forest to assess how canopy spectral signals of three species are linked with phenological processes in the 2012 dry season. We explored different approaches to disentangle the spectral components of canopy phenology processes and analyze their variations over time using 17 images acquired by the camera. The methods included linear spectral mixture analysis (SMA); principal component analysis (PCA); continuum removal (CR); and first-order derivative analysis. In addition, threemore » vegetation indices potentially sensitive to leaf flushing, leaf loss and leaf area index (LAI) were calculated: the Enhanced Vegetation Index (EVI), Normalized Difference Vegetation Index (NDVI) and the entitled Green-Red Normalized Difference (GRND) index. We inspected also the consistency of the camera observations using Moderate Resolution Imaging Spectroradiometer (MODIS) and available phenological data on new leaf production and LAI of young, mature and old leaves simulated by a leaf demography-ontogeny model. The results showed a diversity of phenological responses during the 2012 dry season with related changes in canopy structure and greenness values. Because of the differences in timing and intensity of leaf flushing and leaf shedding, Erisma uncinatum, Manilkara huberi and Chamaecrista xinguensis presented different green vegetation (GV) and non-photosynthetic vegetation (NPV) SMA fractions; distinct PCA scores; changes in depth, width and area of the 681-nm chlorophyll absorption band; and variations over time in the EVI, GRND and NDVI. At the end of dry season, GV increased for Erisma uncinatum, while NPV increased for Chamaecrista xinguensis. For Manilkara huberi, the NPV first increased in the beginning of August and then decreased

Spectral analysis of amazon canopy phenology during the dry season using a tower hyperspectral camera and modis observations

NASA Astrophysics Data System (ADS)

de Moura, Yhasmin Mendes; Galvão, Lênio Soares; Hilker, Thomas; Wu, Jin; Saleska, Scott; do Amaral, Cibele Hummel; Nelson, Bruce Walker; Lopes, Aline Pontes; Wiedeman, Kenia K.; Prohaska, Neill; de Oliveira, Raimundo Cosme; Machado, Carolyne Bueno; Aragão, Luiz E. O. C.

2017-09-01

The association between spectral reflectance and canopy processes remains challenging for quantifying large-scale canopy phenological cycles in tropical forests. In this study, we used a tower-mounted hyperspectral camera in an eastern Amazon forest to assess how canopy spectral signals of three species are linked with phenological processes in the 2012 dry season. We explored different approaches to disentangle the spectral components of canopy phenology processes and analyze their variations over time using 17 images acquired by the camera. The methods included linear spectral mixture analysis (SMA); principal component analysis (PCA); continuum removal (CR); and first-order derivative analysis. In addition, three vegetation indices potentially sensitive to leaf flushing, leaf loss and leaf area index (LAI) were calculated: the Enhanced Vegetation Index (EVI), Normalized Difference Vegetation Index (NDVI) and the entitled Green-Red Normalized Difference (GRND) index. We inspected also the consistency of the camera observations using Moderate Resolution Imaging Spectroradiometer (MODIS) and available phenological data on new leaf production and LAI of young, mature and old leaves simulated by a leaf demography-ontogeny model. The results showed a diversity of phenological responses during the 2012 dry season with related changes in canopy structure and greenness values. Because of the differences in timing and intensity of leaf flushing and leaf shedding, Erisma uncinatum, Manilkara huberi and Chamaecrista xinguensis presented different green vegetation (GV) and non-photosynthetic vegetation (NPV) SMA fractions; distinct PCA scores; changes in depth, width and area of the 681-nm chlorophyll absorption band; and variations over time in the EVI, GRND and NDVI. At the end of dry season, GV increased for Erisma uncinatum, while NPV increased for Chamaecrista xinguensis. For Manilkara huberi, the NPV first increased in the beginning of August and then decreased toward

Spectral analysis of amazon canopy phenology during the dry season using a tower hyperspectral camera and modis observations

DOE PAGES

de Moura, Yhasmin Mendes; Galvão, Lênio Soares; Hilker, Thomas; ...

2017-09-01

The association between spectral reflectance and canopy processes remains challenging for quantifying large-scale canopy phenological cycles in tropical forests. In this paper, we used a tower-mounted hyperspectral camera in an eastern Amazon forest to assess how canopy spectral signals of three species are linked with phenological processes in the 2012 dry season. We explored different approaches to disentangle the spectral components of canopy phenology processes and analyze their variations over time using 17 images acquired by the camera. The methods included linear spectral mixture analysis (SMA); principal component analysis (PCA); continuum removal (CR); and first-order derivative analysis. In addition, threemore » vegetation indices potentially sensitive to leaf flushing, leaf loss and leaf area index (LAI) were calculated: the Enhanced Vegetation Index (EVI), Normalized Difference Vegetation Index (NDVI) and the entitled Green-Red Normalized Difference (GRND) index. We inspected also the consistency of the camera observations using Moderate Resolution Imaging Spectroradiometer (MODIS) and available phenological data on new leaf production and LAI of young, mature and old leaves simulated by a leaf demography-ontogeny model. The results showed a diversity of phenological responses during the 2012 dry season with related changes in canopy structure and greenness values. Because of the differences in timing and intensity of leaf flushing and leaf shedding, Erisma uncinatum, Manilkara huberi and Chamaecrista xinguensis presented different green vegetation (GV) and non-photosynthetic vegetation (NPV) SMA fractions; distinct PCA scores; changes in depth, width and area of the 681-nm chlorophyll absorption band; and variations over time in the EVI, GRND and NDVI. At the end of dry season, GV increased for Erisma uncinatum, while NPV increased for Chamaecrista xinguensis. For Manilkara huberi, the NPV first increased in the beginning of August and then decreased

Dynamics of Trees of Fragmenting Granules in the Quiet Sun: Hinode/SOT Observations Compared to Numerical Simulation

NASA Astrophysics Data System (ADS)

Malherbe, J.-M.; Roudier, T.; Stein, R.; Frank, Z.

2018-01-01

We compare horizontal velocities, vertical magnetic fields, and the evolution of trees of fragmenting granules (TFG, also named families of granules) derived in the quiet Sun at disk center from observations at solar minimum and maximum of the Solar Optical Telescope (SOT on board Hinode) and results of a recent 3D numerical simulation of the magneto-convection. We used 24-hour sequences of a 2D field of view (FOV) with high spatial and temporal resolution recorded by the SOT Broad band Filter Imager (BFI) and Narrow band Filter Imager (NFI). TFG were evidenced by segmentation and labeling of continuum intensities. Horizontal velocities were obtained from local correlation tracking (LCT) of proper motions of granules. Stokes V provided a proxy of the line-of-sight magnetic field (BLOS). The MHD simulation (performed independently) produced granulation intensities, velocity, and magnetic field vectors. We discovered that TFG also form in the simulation and show that it is able to reproduce the main properties of solar TFG: lifetime and size, associated horizontal motions, corks, and diffusive index are close to observations. The largest (but not numerous) families are related in both cases to the strongest flows and could play a major role in supergranule and magnetic network formation. We found that observations do not reveal any significant variation in TFG between solar minimum and maximum.

High Speed Observation of Fragment Impact Initiation of Nitromethane Charges

NASA Astrophysics Data System (ADS)

Cook, M. D.; Briggs, R. I.; Haskins, P. J.; Stennett, C.

1999-06-01

Ultra high speed digital photography has been used to record the onset and build-up of reaction in nitromethane charges that have been impacted by steel fragments. The nitromethane charges were housed in perspex cylinders and back-lit using conventional flash bulbs. Flat plates of aluminium of varying thicknesses were glued to one end of the cylinder and perspex plates to the other. The completed charge was positioned to allow normal impact of the projectiles. The events were filmed using and Imacon 468, ultra high speed digital image system capable of framing at up to 100 million pictures per second, with a minimum interframe time of 10 nanoseconds, and exposure time of between 10ns and 1 millisecond. Using this system it was possible to record detailed photographic information concerning the onset and growth of reaction due to shock initiation of the nitromethane charges. The implications of these results for the ignition and growth process in nitromethane are discussed.

Explosive volcanism may not be an inevitable consequence of magma fragmentation.

PubMed

Gonnermann, Helge M; Manga, Michael

2003-11-27

The fragmentation of magma, containing abundant gas bubbles, is thought to be the defining characteristic of explosive eruptions. When viscous stresses associated with the growth of bubbles and the flow of the ascending magma exceed the strength of the melt, the magma breaks into disconnected fragments suspended within an expanding gas phase. Although repeated effusive and explosive eruptions for individual volcanoes are common, the dynamics governing the transition between explosive and effusive eruptions remain unclear. Magmas for both types of eruptions originate from sources with similar volatile content, yet effusive lavas erupt considerably more degassed than their explosive counterparts. One mechanism for degassing during magma ascent, consistent with observations, is the generation of intermittent permeable fracture networks generated by non-explosive fragmentation near the conduit walls. Here we show that such fragmentation can occur by viscous shear in both effusive and explosive eruptions. Moreover, we suggest that such fragmentation may be important for magma degassing and the inhibition of explosive behaviour. This implies that, contrary to conventional views, explosive volcanism is not an inevitable consequence of magma fragmentation.

The Influence of Forming Companions on the Spectral Energy Distributions of Stars with Circumstellar Discs

NASA Astrophysics Data System (ADS)

Zakhozhay, Olga V.

2017-04-01

We study a possibility to detect signatures of brown dwarf companions in a circumstellar disc based on spectral energy distributions. We present the results of spectral energy distribution simulations for a system with a 0.8 M⊙ central object and a companion with a mass of 30 M J embedded in a typical protoplanetary disc. We use a solution to the one-dimensional radiative transfer equation to calculate the protoplanetary disc flux density and assume, that the companion moves along a circular orbit and clears a gap. The width of the gap is assumed to be the diameter of the brown dwarf Hill sphere. Our modelling shows that the presence of such a gap can initiate an additional minimum in the spectral energy distribution profile of a protoplanetary disc at λ = 10-100 μm. We found that it is possible to detect signatures of the companion when it is located within 10 AU, even when it is as small as 3 M J. The spectral energy distribution of a protostellar disc with a massive fragment (of relatively cold temperature 400 K) might have a similar double peaked profile to the spectral energy distribution of a more evolved disc that contains a gap.

Fragment-based drug design.

PubMed

Feyfant, Eric; Cross, Jason B; Paris, Kevin; Tsao, Désirée H H

2011-01-01

Fragment-based drug design (FBDD), which is comprised of both fragment screening and the use of fragment hits to design leads, began more than 15 years ago and has been steadily gaining in popularity and utility. Its origin lies on the fact that the coverage of chemical space and the binding efficiency of hits are directly related to the size of the compounds screened. Nevertheless, FBDD still faces challenges, among them developing fragment screening libraries that ensure optimal coverage of chemical space, physical properties and chemical tractability. Fragment screening also requires sensitive assays, often biophysical in nature, to detect weak binders. In this chapter we will introduce the technologies used to address these challenges and outline the experimental advantages that make FBDD one of the most popular new hit-to-lead process.

Fast and Efficient Fragment-Based Lead Generation by Fully Automated Processing and Analysis of Ligand-Observed NMR Binding Data.

PubMed

Peng, Chen; Frommlet, Alexandra; Perez, Manuel; Cobas, Carlos; Blechschmidt, Anke; Dominguez, Santiago; Lingel, Andreas

2016-04-14

NMR binding assays are routinely applied in hit finding and validation during early stages of drug discovery, particularly for fragment-based lead generation. To this end, compound libraries are screened by ligand-observed NMR experiments such as STD, T1ρ, and CPMG to identify molecules interacting with a target. The analysis of a high number of complex spectra is performed largely manually and therefore represents a limiting step in hit generation campaigns. Here we report a novel integrated computational procedure that processes and analyzes ligand-observed proton and fluorine NMR binding data in a fully automated fashion. A performance evaluation comparing automated and manual analysis results on (19)F- and (1)H-detected data sets shows that the program delivers robust, high-confidence hit lists in a fraction of the time needed for manual analysis and greatly facilitates visual inspection of the associated NMR spectra. These features enable considerably higher throughput, the assessment of larger libraries, and shorter turn-around times.

Fragment informatics and computational fragment-based drug design: an overview and update.

PubMed

Sheng, Chunquan; Zhang, Wannian

2013-05-01

Fragment-based drug design (FBDD) is a promising approach for the discovery and optimization of lead compounds. Despite its successes, FBDD also faces some internal limitations and challenges. FBDD requires a high quality of target protein and good solubility of fragments. Biophysical techniques for fragment screening necessitate expensive detection equipment and the strategies for evolving fragment hits to leads remain to be improved. Regardless, FBDD is necessary for investigating larger chemical space and can be applied to challenging biological targets. In this scenario, cheminformatics and computational chemistry can be used as alternative approaches that can significantly improve the efficiency and success rate of lead discovery and optimization. Cheminformatics and computational tools assist FBDD in a very flexible manner. Computational FBDD can be used independently or in parallel with experimental FBDD for efficiently generating and optimizing leads. Computational FBDD can also be integrated into each step of experimental FBDD and help to play a synergistic role by maximizing its performance. This review will provide critical analysis of the complementarity between computational and experimental FBDD and highlight recent advances in new algorithms and successful examples of their applications. In particular, fragment-based cheminformatics tools, high-throughput fragment docking, and fragment-based de novo drug design will provide the focus of this review. We will also discuss the advantages and limitations of different methods and the trends in new developments that should inspire future research. © 2012 Wiley Periodicals, Inc.

Mesospheric nightglow spectral survey taken by the ISO spectral spatial imager on ATLAS 1

NASA Technical Reports Server (NTRS)

Owens, J. K.; Torr, D. G.; Torr, M. R.; Chang, T.; Fennelly, J. A.; Richards, P. G.; Morgan, M. F.; Baldridge, T. W.; Fellows, C. W.; Dougani, H.

1993-01-01

This paper reports the first comprehensive spectral survey of the mesospheric airglow between 260 and 832 nm taken by the Imaging Spectrometric Observatory on the ATLAS 1 mission. We select data taken in the spectral window between 275 and 300 nm to determine the variation with altitude of the Herzberg I bands originating from the vibrational levels v-prime = 3 to 8. These data provide the first spatially resolved spectral measurements of the system. The data are used to demonstrate that to within an uncertainty of +/- 10 percent, the vibrational distribution remains invariant with altitude. The deficit reported previously for the v-prime = 5 level is not observed although there is a suggestion of depletion in v-prime = 6. The data could be used to place tight constraints on the vibrational dependence of quenching rate coefficients, and on the abundance of atomic oxygen.

Mesospheric nightglow spectral survey taken by the ISO spectral spatial imager on Atlas 1

NASA Technical Reports Server (NTRS)

Owens, J. K.; Torr, D. G.; Torr, M. R.; Chang, T.; Fennelly, J. A.; Richards, P. G.; Morgan, M. F.; Baldridge, T. W.; Dougani, H.; Swift, W.

1993-01-01

This paper reports the first comprehensive spectral survey of the mesospheric airglow between 260 and 832 nm taken by the Imaging Spectrometric Observatory (ISO) on the ATLAS I mission. We select data taken in the spectral window between 275 and 300 nm to determine the variation with altitude of the Herzberg I bands originating from the vibrational levels v' = 3 to 8. These data provide the first spatially resolved spectral measurements of the system. The data are used to demonstrate that to within an uncertainty of + 10%, the vibrational distribution remains invariant with altitude. The deficit reported previously for the v' = 5 level is not observed although there is a suggestion of depletion in v' = 6. The data could be used to place tight constraints on the vibrational dependence of quenching rate coefficients, and on the abundance of atomic oxygen.

UV-B radiation amplification factor determined based on the simultaneous observation of total ozone and global spectral irradiance

NASA Technical Reports Server (NTRS)

Ito, T.; Sakoda, Y.; Matsubara, K.; Kajihara, R.; Uekubo, T.; Kobayashi, M.; Shitamichi, M.; Ueno, T.; Ito, M.

1994-01-01

The Japan Meteorological Agency started the spectral observation of solar ultraviolet (UV) irradiance on 1 January 1990 at Tateno, Aerological Observatory in Tsukuba (35 deg N, 140 deg E). The observation has been carried out using the Brewer spectrophotometer for the wavelengths from 290 to 325 nm with a 0.5 nm interval every hour from 30 minutes before sunrise to 30 minutes after sunset throughout a year. Because of remarkable similarity within observed spectra, an observed spectrum can be expressed by a simple combination of a reference spectrum and two parameters expressing the deformation of the observed spectrum from the reference. By use of the relation between one of the deformation parameters and the total ozone simultaneously observed with the Dobson spectrophotometer, the possible increase of UV irradiance due to ozone depletion is estimated. For damaging UV, the irradiance possibly increases about 19 percent with the ozone depletion of 10 percent at noon throughout the year in the northern midlatitudes. DUV at noon on the summer solstice possibly increases about 5.6 percent with the ozone depletion of 10 m atm-cm for all latitudes in the Northern Hemisphere.

Microscopic and macroscopic spectral peculiarities of cutaneous tumours

NASA Astrophysics Data System (ADS)

Borisova, Ekaterina; Genova, Tsanislava; Troyanova, Petranka; Terziev, Ivan; Zakharov, Valery; Bratchenko, Ivan; Lomova, Maria; Gorin, Dmitry; Avramov, Latchezar

2017-12-01

Autofluorescence spectral and confocal microscopic measurements were made on different cutaneous neoplastic lesions, namely basal cell carcinoma, squamous cell carcinoma, malignant melanoma, and their dysplastic forms - keratoacantoma, dysplastic nevi and benign lesions related - basal cell papiloma, seboreic keratosa and compound nevi using excitation at 405 nm. Spectroscopic investigations were made on in vivo and ex vivo tissue samples, and confocal microscopy investigations were made on ex vivo and eosin-haematoxilin stained thin slices of the tumours detected. Correlation between the spectral data received and the microscopic features observed was found, related to the morphological and biochemical alterations during neoplasia growth. Specific spectral features observed in each type of lesion investigated on micro and macro level would be presented and discussed.

Dynamic Failure and Fragmentation of a Hot-Pressed Boron Carbide

NASA Astrophysics Data System (ADS)

Sano, Tomoko; Vargas-Gonzalez, Lionel; LaSalvia, Jerry; Hogan, James David

2017-12-01

This study investigates the failure and fragmentation of a hot-pressed boron carbide during high rate impact experiments. Four impact experiments are performed using a composite-backed target configuration at similar velocities, where two of the impact experiments resulted in complete target penetration and two resulted in partial penetration. This paper seeks to evaluate and understand the dynamic behavior of the ceramic that led to either the complete or partial penetration cases, focusing on: (1) surface and internal failure features of fragments using optical, scanning electron, and transmission electron microscopy, and (2) fragment size analysis using state-of-the-art particle-sizing technology that informs about the consequences of failure. Detailed characterization of the mechanical properties and the microstructure is also performed. Results indicate that transgranular fracture was the primary mode of failure in this boron carbide material, and no stress-induced amorphization features were observed. Analysis of the fragment sizes for the partial and completely penetrated experiments revealed a possible correlation between larger fragment sizes and impact performance. The results will add insight into designing improved advanced ceramics for impact protection applications.

Formation and fragmentation of quadruply charged molecular ions by intense femtosecond laser pulses.

PubMed

Yatsuhashi, Tomoyuki; Nakashima, Nobuaki

2010-07-22

We investigated the formation and fragmentation of multiply charged molecular ions of several aromatic molecules by intense nonresonant femtosecond laser pulses of 1.4 mum with a 130 fs pulse duration (up to 2 x 10(14) W cm(-2)). Quadruply charged states were produced for 2,3-benzofluorene and triphenylene molecular ion in large abundance, whereas naphthalene and 1,1'-binaphthyl resulted only in up to triply charged molecular ions. The laser wavelength was nonresonant with regard to the electronic transitions of the neutral molecules, and the degree of fragmentation was strongly correlated with the absorption of the singly charged cation radical. Little fragmentation was observed for naphthalene (off-resonant with cation), whereas heavy fragmentation was observed in the case of 1,1'-binaphthyl (resonant with cation). The degree of H(2) (2H) and 2H(2) (4H) elimination from molecular ions increased as the charge states increased in all the molecules examined. A striking difference was found between triply and quadruply charged 2,3-benzofluorene: significant suppression of molecular ions with loss of odd number of hydrogen was observed in the quadruply charged ions. The Coulomb explosion of protons in the quadruply charged state and succeeding fragmentation resulted in the formation of triply charged molecular ions with an odd number of hydrogens. The hydrogen elimination mechanism in the highly charged state is discussed.

Spectrally resolved interferometric observations of α Cephei and physical modeling of fast rotating stars

NASA Astrophysics Data System (ADS)

Delaa, O.; Zorec, J.; Domiciano de Souza, A.; Mourard, D.; Perraut, K.; Stee, Ph.; Frémat, Y.; Monnier, J.; Kraus, S.; Che, X.; Bério, Ph.; Bonneau, D.; Clausse, J. M.; Challouf, M.; Ligi, R.; Meilland, A.; Nardetto, N.; Spang, A.; McAlister, H.; ten Brummelaar, T.; Sturmann, J.; Sturmann, L.; Turner, N.; Farrington, C.; Goldfinger, P. J.

2013-07-01

Context. When a given observational quantity depends on several stellar physical parameters, it is generally very difficult to obtain observational constraints for each of them individually. Therefore, we studied under which conditions constraints for some individual parameters can be achieved for fast rotators, knowing that their geometry is modified by the rapid rotation which causes a non-uniform surface brightness distribution. Aims: We aim to study the sensitivity of interferometric observables on the position angle of the rotation axis (PA) of a rapidly rotating star, and whether other physical parameters can influence the determination of PA, and also the influence of the surface differential rotation on the determination of the β exponent in the gravity darkening law that enters the interpretation of interferometric observations, using α Cep as a test star. Methods: We used differential phases obtained from observations carried out in the Hα absorption line of α Cep with the VEGA/CHARA interferometer at high spectral resolution, R = 30 000 to study the kinematics in the atmosphere of the star. Results: We studied the influence of the gravity darkening effect (GDE) on the determination of the PA of the rotation axis of α Cep and determined its value, PA = -157-10°+17°. We conclude that the GDE has a weak influence on the dispersed phases. We showed that the surface differential rotation can have a rather strong influence on the determination of the gravity darkening exponent. A new method of determining the inclination angle of the stellar rotational axis is suggested. We conclude that differential phases obtained with spectro-interferometry carried out on the Hα line can in principle lead to an estimate of the stellar inclination angle i. However, to determine both i and the differential rotation parameter α, lines free from the Stark effect and that have collision-dominated source functions are to be preferred.

Unusual Fragmentation of Pro-Ser/Thr-Containing Peptides Detected in Collision-Induced Dissociation Spectra

NASA Astrophysics Data System (ADS)

Medzihradszky, Katalin F.; Trinidad, Jonathan C.

2012-04-01

During collision-induced dissociation (CID)-, phosphoserine- and phosphothreonine-containing peptides frequently undergo neutral loss of phosphoric acid. Subsequent amide bond cleavage N-terminal to the site of phosphorylation results in a y ion with a mass 18 Da lower than the corresponding unmodified y fragment. We report here that when the phosphoserine or phosphothreonine is directly preceded by a proline, an unusual fragment with a mass 10 Da higher than the corresponding unmodified y ion is frequently observed. Accurate mass measurements are consistent with elimination of the phosphoric acid followed by fragmentation between the α carbon and the carbonyl group of the proline residue. We propose a cyclic oxazoline structure for this fragment. Our observation may be explained by the charge-directed SN2 neighboring group participation reaction proposed for the phosphoric acid elimination by Palumbo et al. [Palumbo, A. M., Tepe, J. J., Reid, G. E. Mechanistic Insights into the Multistage Gas-Phase Fragmentation Behavior of Phosphoserine- and Phosphothreonine-Containing Peptides. J. Protein Res. 7(2), 771-779 (2008)]. Considering such specific fragment ions for confirmation purposes after regular database searches may boost the confidence of peptide identifications as well as phosphorylation site assignments.

Contamination of the 5394 Å spectral region by telluric lines

NASA Astrophysics Data System (ADS)

Vince, I.; Vince, O.

2010-11-01

The spectral region in the vicinity of 5394 Å contains three prominent photospheric spectral lines, which can be used as a solar plasma diagnostic tool. The occurrence of telluric lines in this region is a potential source of systematic and random errors in these solar spectral lines. The goal of our investigation was to determine the telluric line contamination of this interesting spectral region. Several series of high-resolution solar spectra within an interval of about 4 Å around the 5394 Å wavelength were observed at different zenith distances of the Sun. Comparison of these spectra has permitted identification of telluric lines in this spectral interval. The observations were carried out with the horizontal solar spectrograph of the Heliophysical Observatory in Debrecen. Telluric feature blending was identified in the blue and red wings of the Fe I 5393.2 Å line, and in the local continuum of the Mn I 5394.7 Å line. The blue wing of the Fe I 5395.2 Å line is contaminated by a weak telluric feature too. The red continuum of this line has a more prominent telluric contamination. A dozen of water vapor telluric lines that determined the observed telluric features were identified in this spectral interval. The profiles of three telluric lines that have a significant influence on both the profiles of solar spectral lines and the level of local continuum were derived, and the variation of their parameters (equivalent width and central depth) with air mass were analyzed.

Impacts of Landscape Context on Patterns of Wind Downfall Damage in a Fragmented Amazonian Landscape

NASA Astrophysics Data System (ADS)

Schwartz, N.; Uriarte, M.; DeFries, R. S.; Gutierrez-Velez, V. H.; Fernandes, K.; Pinedo-Vasquez, M.

2015-12-01

Wind is a major disturbance in the Amazon and has both short-term impacts and lasting legacies in tropical forests. Observed patterns of damage across landscapes result from differences in wind exposure and stand characteristics, such as tree stature, species traits, successional age, and fragmentation. Wind disturbance has important consequences for biomass dynamics in Amazonian forests, and understanding the spatial distribution and size of impacts is necessary to quantify the effects on carbon dynamics. In November 2013, a mesoscale convective system was observed over the study area in Ucayali, Peru, a highly human modified and fragmented forest landscape. We mapped downfall damage associated with the storm in order to ask: how does the severity of damage vary within forest patches, and across forest patches of different sizes and successional ages? We applied spectral mixture analysis to Landsat images from 2013 and 2014 to calculate the change in non-photosynthetic vegetation fraction after the storm, and combined it with C-band SAR data from the Sentinel-1 satellite to predict downfall damage measured in 30 field plots using random forest regression. We then applied this model to map damage in forests across the study area. Using a land cover classification developed in a previous study, we mapped secondary and mature forest, and compared the severity of damage in the two. We found that damage was on average higher in secondary forests, but patterns varied spatially. This study demonstrates the utility of using multiple sources of satellite data for mapping wind disturbance, and adds to our understanding of the sources of variation in wind-related damage. Ultimately, an improved ability to map wind impacts and a better understanding of their spatial patterns can contribute to better quantification of carbon dynamics in Amazonian landscapes.

All-Sky Observational Evidence for An Inverse Correlation Between Dust Temperature and Emissivity Spectral Index

NASA Technical Reports Server (NTRS)

Liang, Z.; Fixsen, D. J.; Gold, B.

2012-01-01

We show that a one-component variable-emissivity-spectral-index model (the free- model) provides more physically motivated estimates of dust temperature at the Galactic polar caps than one- or two-component fixed-emissivity-spectral-index models (fixed- models) for interstellar dust thermal emission at far-infrared and millimeter wavelengths. For the comparison we have fit all-sky one-component dust models with fixed or variable emissivity spectral index to a new and improved version of the 210-channel dust spectra from the COBE-FIRAS, the 100-240 micrometer maps from the COBE-DIRBE and the 94 GHz dust map from the WMAP. The best model, the free-alpha model, is well constrained by data at 60-3000 GHz over 86 per cent of the total sky area. It predicts dust temperature (T(sub dust)) to be 13.7-22.7 (plus or minus 1.3) K, the emissivity spectral index (alpha) to be 1.2-3.1 (plus or minus 0.3) and the optical depth (tau) to range 0.6-46 x 10(exp -5) with a 23 per cent uncertainty. Using these estimates, we present all-sky evidence for an inverse correlation between the emissivity spectral index and dust temperature, which fits the relation alpha = 1/(delta + omega (raised dot) T(sub dust) with delta = -.0.510 plus or minus 0.011 and omega = 0.059 plus or minus 0.001. This best model will be useful to cosmic microwave background experiments for removing foreground dust contamination and it can serve as an all-sky extended-frequency reference for future higher resolution dust models.

Spectral Indices of Faint Radio Sources

NASA Astrophysics Data System (ADS)

Gim, Hansung B.; Hales, Christopher A.; Momjian, Emmanuel; Yun, Min Su

2015-01-01

The significant improvement in bandwidth and the resultant sensitivity offered by the Karl G. Jansky Very Large Array (VLA) allows us to explore the faint radio source population. Through the study of the radio continuum we can explore the spectral indices of these radio sources. Robust radio spectral indices are needed for accurate k-corrections, for example in the study of the radio - far-infrared (FIR) correlation. We present an analysis of measuring spectral indices using two different approaches. In the first, we use the standard wideband imaging algorithm in the data reduction package CASA. In the second, we use a traditional approach of imaging narrower bandwidths to derive the spectral indices. For these, we simulated data to match the observing parameter space of the CHILES Con Pol survey (Hales et al. 2014). We investigate the accuracy and precision of spectral index measurements as a function of signal-to noise, and explore the requirements to reliably probe possible evolution of the radio-FIR correlation in CHILES Con Pol.

Spectral Units on Europa and Ganymede

NASA Technical Reports Server (NTRS)

Mccord, T. B.; Nelson, M. L.; Clark, R. N.; Johnson, T. V.; Matson, D. L.; Johnson, R. E.; Boring, J.

1985-01-01

Comparisons of Europa and Ganymede multispectral data show that Ganymede is less spectrally variable than Europa. Four major spectral units dominate Ganymede, corresponding to the ancient cratered terrain and the grooved terrain in the leading and trailing hemispheres. A hemispheric asymmetry in UV absorption definitely exists on Ganymede, although it is not so strong as that on Europa. Comparison of normalized spectra for the four major units shows that the sense of the asymmetry (more absoption toward shorter wavelengths on the trailing hemisphere) is also the same on the two bodies. This hemispheric asymmetry is interpreted as evidence of alteration of the surface by magnetospheric bombardment or micrometorite bombardment. It is concluded that the pattern observed represents a steady state involving both of these exogenic modifying agents. The spectral changes which could be produced by these two processes are grain size alteration and changes in composition. The spectral effects of variation in water ice grain size are fairly well known. Laboratory experiments are being conducted to study the spectral effects of sulfur irradiation on water ice.

The impact of habitat fragmentation on tsetse abundance on the plateau of eastern Zambia.

PubMed

Ducheyne, E; Mweempwa, C; De Pus, C; Vernieuwe, H; De Deken, R; Hendrickx, G; Van den Bossche, P

2009-09-01

Tsetse-transmitted human or livestock trypanosomiasis is one of the major constraints to rural development in sub-Saharan Africa. The epidemiology of the disease is determined largely by tsetse fly density. A major factor, contributing to tsetse population density is the availability of suitable habitat. In large parts of Africa, encroachment of people and their livestock resulted in a destruction and fragmentation of such suitable habitat. To determine the effect of habitat change on tsetse density a study was initiated in a tsetse-infested zone of eastern Zambia. The study area represents a gradient of habitat change, starting from a zone with high levels of habitat destruction and ending in an area where livestock and people are almost absent. To determine the distribution and density of the fly, tsetse surveys were conducted throughout the study area in the dry and in the rainy season. Landsat ETM+ imagery covering the study area were classified into four land cover classes (munga, miombo, agriculture and settlements) and two auxiliary spectral classes (clouds and shadow) using a Gaussian Maximum Likelihood Classifier. The classes were regrouped into natural vegetation and agricultural zone. The binary images were overlaid with hexagons to obtain the spatial spectrum of spatial pattern. Hexagonal coverage was selected because of its compact and regular form. To identify scale-specific spatial patterns and associated entomological phenomena, the size of the hexagonal coverage was varied (250 and 500 m). Per coverage, total class area, mean patch size, number of patches and patch size standard deviation were used as fragmentation indices. Based on the fragmentation index values, the study zone was classified using a Partitioning Around Mediods (PAM) method. The number of classes was determined using the Wilks' lambda coefficient. To determine the impact of habitat fragmentation on tsetse abundance, the correlation between the fragmentation indices and the index

SPECTRAL SMILE CORRECTION IN CRISM HYPERSPECTRAL IMAGES

NASA Astrophysics Data System (ADS)

Ceamanos, X.; Doute, S.

2009-12-01

The Compact Reconnaissance Imaging Spectrometer for Mars (CRISM) is affected by a common artifact in "push-broom" sensors, the so-called "spectral smile". As a consequence, both central wavelength and spectral width of the spectral response vary along the across-track dimension, thus giving rise to a shifting and smoothing of spectra (see Fig. 1 (left)). In fact, both effects are greater for spectra on the edges, while they are minimum for data acquired by central detectors, the so-called "sweet spot". The prior artifacts become particularly critical for Martian observations which contain steep spectra such as CO2 ice-rich polar images. Fig. 1 (right) shows the horizontal brightness gradient which appears in every band corresponding to a steep portion of spectra. The correction of CRISM spectral smile is addressed using a two-step method which aims at modifying data sensibly in order to mimic the optimal CRISM response. First, all spectra, which are previously interpolated by cubic splines, are resampled to the "sweet spot" wavelengths in order to overcome the spectra shift. Secondly, the non-uniform spectral width is overcome by mimicking an increase of spectral resolution thanks to a spectral sharpening. In order to minimize noise, only bands particularly suffering from smile are selected. First, bands corresponding to the outliers of the Minimum Noise Transformation (MNF) eigenvector, which corresponds to the MNF band related to smile (MNF-smile), are selected. Then, a spectral neighborhood Θi, which takes into account the local spectral convexity or concavity, is defined for every selected band in order to maximize spectral shape preservation. The proposed sharpening technique takes into account both the instrument parameters and the observed spectra. First, every reflectance value belonging to a Θi is reevaluated by a sharpening which depends on a ratio of the spectral width of the current detector and the "sweet spot" one. Then, the optimal degree of

Inflaton fragmentation in E models of cosmological α -attractors

NASA Astrophysics Data System (ADS)

Hasegawa, Fuminori; Hong, Jeong-Pyong

2018-04-01

Cosmological α -attractors are observationally favored due to the asymptotic flatness of the potential. Since its flatness induces the negative pressure, the coherent oscillation of the inflaton field could fragment into quasistable localized objects called I-balls (or "oscillons"). We investigated the possibility of I-ball formation in E models of α -attractors. Using the linear analysis and the lattice simulations, we found that the instability sufficiently grows against the cosmic expansion and the inflaton actually fragments into the I-balls for α ≲10-3 .

Optimal design of an earth observation optical system with dual spectral and high resolution

NASA Astrophysics Data System (ADS)

Yan, Pei-pei; Jiang, Kai; Liu, Kai; Duan, Jing; Shan, Qiusha

2017-02-01

With the increasing demand of the high-resolution remote sensing images by military and civilians, Countries around the world are optimistic about the prospect of higher resolution remote sensing images. Moreover, design a visible/infrared integrative optic system has important value in earth observation. Because visible system can't identify camouflage and recon at night, so we should associate visible camera with infrared camera. An earth observation optical system with dual spectral and high resolution is designed. The paper mainly researches on the integrative design of visible and infrared optic system, which makes the system lighter and smaller, and achieves one satellite with two uses. The working waveband of the system covers visible, middle infrared (3-5um). Dual waveband clear imaging is achieved with dispersive RC system. The focal length of visible system is 3056mm, F/# is 10.91. And the focal length of middle infrared system is 1120mm, F/# is 4. In order to suppress the middle infrared thermal radiation and stray light, the second imaging system is achieved and the narcissus phenomenon is analyzed. The system characteristic is that the structure is simple. And the especial requirements of the Modulation Transfer Function (MTF), spot, energy concentration, and distortion etc. are all satisfied.

Rock fragment movement in shallow rill flow - A laboratory study

NASA Astrophysics Data System (ADS)

Becker, Kerstin; Wirtz, Stefan; Seeger, Manuel; Gronz, Oliver; Remke, Alexander; Iserloh, Thomas; Brings, Christine; Casper, Markus; Ries, Johannes B.

2014-05-01

Studies concerning rill erosion mainly deal with the erosion and transport of fine material. The transport of rock fragments is examined mostly for mountain rivers. But there are important differences between the conditions and processes in rivers and in rills: (1) In most cases, the river cuts into a coarse substrate, where fine material is sparse, whereas rill erosion occurs on arable land. So the main part of the substrate is fine material and only single rock fragments influence the processes. (2) In rivers, the water depth is relatively high. There are a lot of studies about hydraulic parameters in such flows, but there is almost nothing known about hydraulic conditions in surface runoff events of a few centimeters. Additionally, little information exists about the rock fragment movement as a part of rill erosion processes on arable land. This knowledge should be increased because rock fragments cause non-stationary water turbulences in rills, which enhance the erosive force of flowing water. Field experiments can only show the fact that a certain rock fragment has moved: The starting point and the final position can be estimated. But the moving path and especially the initiation of the movement is not detectable under field conditions. Hence, we developed a laboratory setup to analyze the movement of rock fragments depending on rock fragment properties (size, form), slope gradient, flow velocity and surface roughness. By observing the rock fragments with cameras from two different angles we are able (1) to measure the rotation angles of a rock fragment during the experiment and (2) to deduce different rock fragment movement patterns. On this poster we want to present the experimental setup, developed within the scope of a master thesis, and the results of these experiments.

Assessment of fragment projection hazard: probability distributions for the initial direction of fragments.

PubMed

Tugnoli, Alessandro; Gubinelli, Gianfilippo; Landucci, Gabriele; Cozzani, Valerio

2014-08-30

The evaluation of the initial direction and velocity of the fragments generated in the fragmentation of a vessel due to internal pressure is an important information in the assessment of damage caused by fragments, in particular within the quantitative risk assessment (QRA) of chemical and process plants. In the present study an approach is proposed to the identification and validation of probability density functions (pdfs) for the initial direction of the fragments. A detailed review of a large number of past accidents provided the background information for the validation procedure. A specific method was developed for the validation of the proposed pdfs. Validated pdfs were obtained for both the vertical and horizontal angles of projection and for the initial velocity of the fragments. Copyright © 2014 Elsevier B.V. All rights reserved.

Knowledge-based fragment binding prediction.

PubMed

Tang, Grace W; Altman, Russ B

2014-04-01

Target-based drug discovery must assess many drug-like compounds for potential activity. Focusing on low-molecular-weight compounds (fragments) can dramatically reduce the chemical search space. However, approaches for determining protein-fragment interactions have limitations. Experimental assays are time-consuming, expensive, and not always applicable. At the same time, computational approaches using physics-based methods have limited accuracy. With increasing high-resolution structural data for protein-ligand complexes, there is now an opportunity for data-driven approaches to fragment binding prediction. We present FragFEATURE, a machine learning approach to predict small molecule fragments preferred by a target protein structure. We first create a knowledge base of protein structural environments annotated with the small molecule substructures they bind. These substructures have low-molecular weight and serve as a proxy for fragments. FragFEATURE then compares the structural environments within a target protein to those in the knowledge base to retrieve statistically preferred fragments. It merges information across diverse ligands with shared substructures to generate predictions. Our results demonstrate FragFEATURE's ability to rediscover fragments corresponding to the ligand bound with 74% precision and 82% recall on average. For many protein targets, it identifies high scoring fragments that are substructures of known inhibitors. FragFEATURE thus predicts fragments that can serve as inputs to fragment-based drug design or serve as refinement criteria for creating target-specific compound libraries for experimental or computational screening.

Knowledge-based Fragment Binding Prediction

PubMed Central

Tang, Grace W.; Altman, Russ B.

2014-01-01

Target-based drug discovery must assess many drug-like compounds for potential activity. Focusing on low-molecular-weight compounds (fragments) can dramatically reduce the chemical search space. However, approaches for determining protein-fragment interactions have limitations. Experimental assays are time-consuming, expensive, and not always applicable. At the same time, computational approaches using physics-based methods have limited accuracy. With increasing high-resolution structural data for protein-ligand complexes, there is now an opportunity for data-driven approaches to fragment binding prediction. We present FragFEATURE, a machine learning approach to predict small molecule fragments preferred by a target protein structure. We first create a knowledge base of protein structural environments annotated with the small molecule substructures they bind. These substructures have low-molecular weight and serve as a proxy for fragments. FragFEATURE then compares the structural environments within a target protein to those in the knowledge base to retrieve statistically preferred fragments. It merges information across diverse ligands with shared substructures to generate predictions. Our results demonstrate FragFEATURE's ability to rediscover fragments corresponding to the ligand bound with 74% precision and 82% recall on average. For many protein targets, it identifies high scoring fragments that are substructures of known inhibitors. FragFEATURE thus predicts fragments that can serve as inputs to fragment-based drug design or serve as refinement criteria for creating target-specific compound libraries for experimental or computational screening. PMID:24762971

Fragments of a larger whole: retrieval cues constrain observed neural correlates of memory encoding.

PubMed

Otten, Leun J

2007-09-01

Laying down a new memory involves activity in a number of brain regions. Here, it is shown that the particular regions associated with successful encoding depend on the way in which memory is probed. Event-related functional magnetic resonance imaging signals were acquired while subjects performed an incidental encoding task on a series of visually presented words denoting objects. A recognition memory test using the Remember/Know procedure to separate responses based on recollection and familiarity followed 1 day later. Critically, half of the studied objects were cued with a corresponding spoken word, and half with a corresponding picture. Regardless of cue, activity in prefrontal and hippocampal regions predicted subsequent recollection of a word. Type of retrieval cue modulated activity in prefrontal, temporal, and parietal cortices. Words subsequently recognized on the basis of a sense of familiarity were at study also associated with differential activity in a number of brain regions, some of which were probe dependent. Thus, observed neural correlates of successful encoding are constrained by type of retrieval cue, and are only fragments of all encoding-related neural activity. Regions exhibiting cue-specific effects may be sites that support memory through the degree of overlap between the processes engaged during encoding and those engaged during retrieval.

Robustness of optimal random searches in fragmented environments

NASA Astrophysics Data System (ADS)

Wosniack, M. E.; Santos, M. C.; Raposo, E. P.; Viswanathan, G. M.; da Luz, M. G. E.

2015-05-01

The random search problem is a challenging and interdisciplinary topic of research in statistical physics. Realistic searches usually take place in nonuniform heterogeneous distributions of targets, e.g., patchy environments and fragmented habitats in ecological systems. Here we present a comprehensive numerical study of search efficiency in arbitrarily fragmented landscapes with unlimited visits to targets that can only be found within patches. We assume a random walker selecting uniformly distributed turning angles and step lengths from an inverse power-law tailed distribution with exponent μ . Our main finding is that for a large class of fragmented environments the optimal strategy corresponds approximately to the same value μopt≈2 . Moreover, this exponent is indistinguishable from the well-known exact optimal value μopt=2 for the low-density limit of homogeneously distributed revisitable targets. Surprisingly, the best search strategies do not depend (or depend only weakly) on the specific details of the fragmentation. Finally, we discuss the mechanisms behind this observed robustness and comment on the relevance of our results to both the random search theory in general, as well as specifically to the foraging problem in the biological context.

The Fragment Network: A Chemistry Recommendation Engine Built Using a Graph Database.

PubMed

Hall, Richard J; Murray, Christopher W; Verdonk, Marcel L

2017-07-27

The hit validation stage of a fragment-based drug discovery campaign involves probing the SAR around one or more fragment hits. This often requires a search for similar compounds in a corporate collection or from commercial suppliers. The Fragment Network is a graph database that allows a user to efficiently search chemical space around a compound of interest. The result set is chemically intuitive, naturally grouped by substitution pattern and meaningfully sorted according to the number of observations of each transformation in medicinal chemistry databases. This paper describes the algorithms used to construct and search the Fragment Network and provides examples of how it may be used in a drug discovery context.

Plasminogen fragments K 1-3 and K 5 bind to different sites in fibrin fragment DD.

PubMed

Grinenko, T V; Kapustianenko, L G; Yatsenko, T A; Yusova, O I; Rybachuk, V N

2016-01-01

Specific plasminogen-binding sites of fibrin molecule are located in Аα148-160 regions of C-terminal domains. Plasminogen interaction with these sites initiates the activation process of proenzyme and subsequent fibrin lysis. In this study we investigated the binding of plasminogen fragments K 1-3 and K 5 with fibrin fragment DD and their effect on Glu-plasminogen interaction with DD. It was shown that the level of Glu-plasminogen binding to fibrin fragment DD is decreased by 50-60% in the presence of K 1-3 and K 5. Fragments K 1-3 and K 5 have high affinity to fibrin fragment DD (Kd is 0.02 for K 1-3 and 0.054 μМ for K 5). K 5 interaction is independent and K 1-3 is partly dependent on C-terminal lysine residues. K 1-3 interacts with complex of fragment DD-immobilized K 5 as well as K 5 with complex of fragment DD-immobilized K 1-3. The plasminogen fragments do not displace each other from binding sites located in fibrin fragment DD, but can compete for the interaction. The results indicate that fibrin fragment DD contains different binding sites for plasminogen kringle fragments K 1-3 and K 5, which can be located close to each other. The role of amino acid residues of fibrin molecule Аα148-160 region in interaction with fragments K 1-3 and K 5 is discussed.

Integrated and spectral energetics of the GLAS general circulation model

NASA Technical Reports Server (NTRS)

Tenenbaum, J.

1982-01-01

Integrated and spectral error energetics of the GLAS General circulation model are compared with observations for periods in January 1975, 1976, and 1977. For two cases the model shows significant skill in predicting integrated energetics quantities out to two weeks, and for all three cases, the integrated monthly mean energetics show qualitative improvements over previous versions of the model in eddy kinetic energy and barotropic conversions. Fundamental difficulties remain with leakage of energy to the stratospheric level, particularly above strong initial jet streams associated in part with regions of steep terrain. The spectral error growth study represents the first comparison of general circulation model spectral energetics predictions with the corresponding observational spectra on a day by day basis. The major conclusion is that eddy kinetics energy can be correct while significant errors occur in the kinetic energy of wavenumber 3. Both the model and observations show evidence of single wavenumber dominance in eddy kinetic energy and the correlation of spectral kinetics and potential energy.

A nuclear fragmentation energy deposition model

NASA Technical Reports Server (NTRS)

Ngo, D. M.; Wilson, J. W.; Fogarty, T. N.; Buck, W. W.; Townsend, L. W. (Principal Investigator)

1991-01-01

A formalism for target fragment transport is presented with application to energy loss spectra in thin silicon devices. A nuclear data base is recommended that agrees well with the measurements of McNulty et al. using surface barrier detectors. High-energy events observed by McNulty et al., which are not predicted by intranuclear cascade models, are well represented by the present work.

Mercury-induced fragmentation of n-decane and n-undecane in positive mode ion mobility spectrometry.

PubMed

Gunzer, F

2015-09-21

Ion mobility spectrometry is a well-known technique for trace gas analysis. Using soft ionization techniques, fragmentation of analytes is normally not observed, with the consequence that analyte spectra of single substances are quite simple, i.e. showing in general only one peak. If the concentration is high enough, an extra cluster peak involving two analyte molecules can often be observed. When investigating n-alkanes, different results regarding the number of peaks in the spectra have been obtained in the past using this spectrometric technique. Here we present results obtained when analyzing n-alkanes (n-hexane to n-undecane) with a pulsed electron source, which show no fragmentation or clustering at all. However, when investigating a mixture of mercury and an n-alkane, a situation quite typical in the oil and gas industry, a strong fragmentation and cluster formation involving these fragments has been observed exclusively for n-decane and n-undecane.

Freezing, fragmentation, and charge separation in sonic sprayed water droplets

NASA Astrophysics Data System (ADS)

Zilch, Lloyd W.; Maze, Joshua T.; Smith, John W.; Jarrold, Martin F.

2009-06-01

Water droplets are generated by sonic spray, transferred into vacuum through a capillary interface, and then passed through two image charge detectors separated by a drift region. The image charge detectors measure the charge and velocity of each droplet. For around 1% of the droplets, the charge changes significantly between the detectors. In some cases it increases, in others it decreases, and for some droplets the charge changes polarity. We attribute the charge changing behavior to fragmentation caused by freezing. Simulations indicate that the time required for a droplet to cool and freeze in vacuum depends on its size, and that droplets with radii of 1-2 [mu]m have the right size to freeze between the two detectors. These sizes correspond to the smaller end of the distribution present in the experiment. When the charge on a droplet increases or changes polarity, fragmentation must be accompanied by charge separation where fragments carry away opposite charges. In some cases, two fission fragments were observed in the second charge detector. We show examples where the droplet breaks apart to give fragments of the same charge and opposite charges. The fragmentation and charge changing behavior found here is consistent with what has been found in the freezing of larger suspended and supported droplets.

From Large-scale to Protostellar Disk Fragmentation into Close Binary Stars

NASA Astrophysics Data System (ADS)

Sigalotti, Leonardo Di G.; Cruz, Fidel; Gabbasov, Ruslan; Klapp, Jaime; Ramírez-Velasquez, José

2018-04-01

Recent observations of young stellar systems with the Atacama Large Millimeter/submillimeter Array (ALMA) and the Karl G. Jansky Very Large Array are helping to cement the idea that close companion stars form via fragmentation of a gravitationally unstable disk around a protostar early in the star formation process. As the disk grows in mass, it eventually becomes gravitationally unstable and fragments, forming one or more new protostars in orbit with the first at mean separations of 100 au or even less. Here, we report direct numerical calculations down to scales as small as ∼0.1 au, using a consistent Smoothed Particle Hydrodynamics code, that show the large-scale fragmentation of a cloud core into two protostars accompanied by small-scale fragmentation of their circumstellar disks. Our results demonstrate the two dominant mechanisms of star formation, where the disk forming around a protostar (which in turn results from the large-scale fragmentation of the cloud core) undergoes eccentric (m = 1) fragmentation to produce a close binary. We generate two-dimensional emission maps and simulated ALMA 1.3 mm continuum images of the structure and fragmentation of the disks that can help explain the dynamical processes occurring within collapsing cloud cores.

Implementation of spectral clustering on microarray data of carcinoma using k-means algorithm

NASA Astrophysics Data System (ADS)

Frisca, Bustamam, Alhadi; Siswantining, Titin

2017-03-01

Clustering is one of data analysis methods that aims to classify data which have similar characteristics in the same group. Spectral clustering is one of the most popular modern clustering algorithms. As an effective clustering technique, spectral clustering method emerged from the concepts of spectral graph theory. Spectral clustering method needs partitioning algorithm. There are some partitioning methods including PAM, SOM, Fuzzy c-means, and k-means. Based on the research that has been done by Capital and Choudhury in 2013, when using Euclidian distance k-means algorithm provide better accuracy than PAM algorithm. So in this paper we use k-means as our partition algorithm. The major advantage of spectral clustering is in reducing data dimension, especially in this case to reduce the dimension of large microarray dataset. Microarray data is a small-sized chip made of a glass plate containing thousands and even tens of thousands kinds of genes in the DNA fragments derived from doubling cDNA. Application of microarray data is widely used to detect cancer, for the example is carcinoma, in which cancer cells express the abnormalities in his genes. The purpose of this research is to classify the data that have high similarity in the same group and the data that have low similarity in the others. In this research, Carcinoma microarray data using 7457 genes. The result of partitioning using k-means algorithm is two clusters.

Influence of aerosols on surface reaching spectral irradiance and introduction to a new technique of estimating aerosol radiative forcing from high resolution spectral flux measurements

NASA Astrophysics Data System (ADS)

Rao, Roshan

2016-04-01

Aerosol radiative forcing estimates with high certainty are required in climate change studies. The approach in estimating the aerosol radiative forcing by using the chemical composition of aerosols is not effective as the chemical composition data with radiative properties are not widely available. We look into the approach where ground based spectral radiation flux measurement is made and along with an Radtiative transfer (RT) model, radiative forcing is estimated. Measurements of spectral flux were made using an ASD spectroradiometer with 350 - 1050 nm wavelength range and a 3nm resolution during around 54 clear-sky days during which AOD range was around 0.01 to 0.7. Simultaneous measurements of black carbon were also made using Aethalometer (Magee Scientific) which ranged from around 1.5 ug/m3 to 8 ug/m3. The primary study involved in understanding the sensitivity of spectral flux due to change in individual aerosol species (Optical properties of Aerosols and Clouds (OPAC) classified aerosol species) using the SBDART RT model. This made us clearly distinguish the influence of different aerosol species on the spectral flux. Following this, a new technique has been introduced to estimate an optically equivalent mixture of aerosol species for the given location. The new method involves matching different combinations of aerosol species in OPAC model and RT model as long as the combination which gives the minimum root mean squared deviation from measured spectral flux is obtained. Using the optically equivalent aerosol mixture and RT model, aerosol radiative forcing is estimated. Also an alternate method to estimate the spectral SSA is discussed. Here, the RT model, the observed spectral flux and spectral AOD is used. Spectral AOD is input to RT model and SSA is varied till the minimum root mean squared difference between observed and simulated spectral flux from RT model is obtained. The methods discussed are limited to clear sky scenes and its accuracy to derive

Applications of spectral band adjustment factors (SBAF) for cross-calibration

USGS Publications Warehouse

Chander, Gyanesh

2013-01-01

To monitor land surface processes over a wide range of temporal and spatial scales, it is critical to have coordinated observations of the Earth's surface acquired from multiple spaceborne imaging sensors. However, an integrated global observation framework requires an understanding of how land surface processes are seen differently by various sensors. This is particularly true for sensors acquiring data in spectral bands whose relative spectral responses (RSRs) are not similar and thus may produce different results while observing the same target. The intrinsic offsets between two sensors caused by RSR mismatches can be compensated by using a spectral band adjustment factor (SBAF), which takes into account the spectral profile of the target and the RSR of the two sensors. The motivation of this work comes from the need to compensate the spectral response differences of multispectral sensors in order to provide a more accurate cross-calibration between the sensors. In this paper, radiometric cross-calibration of the Landsat 7 Enhanced Thematic Mapper Plus (ETM+) and the Terra Moderate Resolution Imaging Spectroradiometer (MODIS) sensors was performed using near-simultaneous observations over the Libya 4 pseudoinvariant calibration site in the visible and near-infrared spectral range. The RSR differences of the analogous ETM+ and MODIS spectral bands provide the opportunity to explore, understand, quantify, and compensate for the measurement differences between these two sensors. The cross-calibration was initially performed by comparing the top-of-atmosphere (TOA) reflectances between the two sensors over their lifetimes. The average percent differences in the long-term trends ranged from $-$5% to $+$6%. The RSR compensated ETM+ TOA reflectance (ETM+$^{ast}$) measurements were then found to agree with MODIS TOA reflectance to within 5% for all bands when Earth Observing-1 Hy- erion hyperspectral data were used to produce the SBAFs. These differences were later

Chameleon fragmentation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brax, Philippe; Upadhye, Amol, E-mail: philippe.brax@cea.fr, E-mail: aupadhye@anl.gov

2014-02-01

A scalar field dark energy candidate could couple to ordinary matter and photons, enabling its detection in laboratory experiments. Here we study the quantum properties of the chameleon field, one such dark energy candidate, in an ''afterglow'' experiment designed to produce, trap, and detect chameleon particles. In particular, we investigate the possible fragmentation of a beam of chameleon particles into multiple particle states due to the highly non-linear interaction terms in the chameleon Lagrangian. Fragmentation could weaken the constraints of an afterglow experiment by reducing the energy of the regenerated photons, but this energy reduction also provides a unique signaturemore » which could be detected by a properly-designed experiment. We show that constraints from the CHASE experiment are essentially unaffected by fragmentation for φ{sup 4} and 1/φ potentials, but are weakened for steeper potentials, and we discuss possible future afterglow experiments.« less

Observed Differences in the Human Footprint and Forest Fragmentation in the Primary Forest Area of the Democratic Republic of Congo: A Remote Sensing Study for 2000-2010

NASA Astrophysics Data System (ADS)

Molinario, G.

2015-12-01

Conflict in the Democratic Republic of Congo (DRC) and neighboring countries has caused the displacement of people internally and internationally sometimes leading to drastic changes in the impact that traditional slash and burn shifting cultivation has on the forest ecosystem. In other areas, the lack of infrastructure and governance has isolated and protected areas of core forest from large scale exploitation. Observing specific patterns of forest fragmentation caused either by the expansion of existing rural complex areas or of isolated forest perforations has allowed us to track the differential growth of the human footprint throughout forested area of the country during the period 2000-2010. Our methodological approach involved the development of a model of shifting cultivation and forest fragmentation in which spatial rules applied morphological image processing to the Forets d'Afrique Central Evaluee par Teledetection (FACET) product. The result is a disaggregated classification of the primary forest into patch, edge, perforated, fragmented and core forest subtypes which we subsequently re-aggregated into homogenous anthropogenic macro-areas of rural complex and isolated forest perforations. We tracked how subsequent forest loss observed in 2005 and 2010 grew or shrunk these areas, presumably with differential impacts on the forest ecosystem. Using this approach we were able to map forest degradation by contextualizing the contribution of forest loss to change in different types of areas, highlighting how it can be greatly underestimated by a non contextualized per-pixel assessment of forest cover loss.

Spectral analysis of temperature and Brunt-Vaisala frequency fluctuations observed by radiosondes

NASA Technical Reports Server (NTRS)

Tsuda, T.; Vanzandt, T. E.; Kato, S.; Fukao, S.; Sato, T.

1989-01-01

Recent studies have revealed that vertical wave number spectra of wind velocity and temperture fluctuations in the troposphere and the lower stratosphere are fairly well explained by a saturated gravity wave spectrum. But N(2) (N:Brunt-Vaisala (BV) frequency) spectra seem to be better for testing the scaling of the vertical wave number spectra in layers with different stratifications, beause its energy density is proportional only to the background value of N(2), while that for temperature depends on both the BV frequency and the potential temperature. From temperature profiles observed in June to August 1987 over the MU Observatory, Japan, by using a radiosonde with 30 m height resolution, N(2) spectra are determined in the 2 to 8.5 km (troposphere) and 18.5 to 25 km (lower stratosphere) ranges. Although individual spectra show fairly large day-by-day variability, the slope of the median of 34 spectra agrees reasonably with the theoretical value of -1 in the wave number range of 6 x 10(-4) similar to 3 x 10(-3) (c/m). The ratio of the spectral energy between these two height regions is about equal to the ratio of N(2), consistent with the prediction of saturated gravity wave theory.

Label-free observation of tissues by high-speed stimulated Raman spectral microscopy and independent component analysis

NASA Astrophysics Data System (ADS)

Ozeki, Yasuyuki; Otsuka, Yoichi; Sato, Shuya; Hashimoto, Hiroyuki; Umemura, Wataru; Sumimura, Kazuhiko; Nishizawa, Norihiko; Fukui, Kiichi; Itoh, Kazuyoshi

2013-02-01

We have developed a video-rate stimulated Raman scattering (SRS) microscope with frame-by-frame wavenumber tunability. The system uses a 76-MHz picosecond Ti:sapphire laser and a subharmonically synchronized, 38-MHz Yb fiber laser. The Yb fiber laser pulses are spectrally sliced by a fast wavelength-tunable filter, which consists of a galvanometer scanner, a 4-f optical system and a reflective grating. The spectral resolution of the filter is ~ 3 cm-1. The wavenumber was scanned from 2800 to 3100 cm-1 with an arbitrary waveform synchronized to the frame trigger. For imaging, we introduced a 8-kHz resonant scanner and a galvanometer scanner. We were able to acquire SRS images of 500 x 480 pixels at a frame rate of 30.8 frames/s. Then these images were processed by principal component analysis followed by a modified algorithm of independent component analysis. This algorithm allows blind separation of constituents with overlapping Raman bands from SRS spectral images. The independent component (IC) spectra give spectroscopic information, and IC images can be used to produce pseudo-color images. We demonstrate various label-free imaging modalities such as 2D spectral imaging of the rat liver, two-color 3D imaging of a vessel in the rat liver, and spectral imaging of several sections of intestinal villi in the mouse. Various structures in the tissues such as lipid droplets, cytoplasm, fibrous texture, nucleus, and water-rich region were successfully visualized.

Fragments and Coherence

ERIC Educational Resources Information Center

Watson, Anne

2008-01-01

Can teachers contact the inner coherence of mathematics while working in a context fragmented by always-new objectives, criteria, and initiatives? How, more importantly, can learners experience the inner coherence of mathematics while working in a context fragmented by testing, modular curricular, short-term learning objectives, and lessons that…

Dynamic fragmentation of cellular, ice-templated alumina scaffolds

DOE PAGES

Tan, Yi Ming; Cervantes, Octavio; Nam, SeanWoo; ...

2016-01-08

Here, we examine the dynamic failure of ice-templated freeze-cast alumina scaffolds that are being considered as biomimetic hierarchical structures. Three porosities of alumina freeze-cast structures were fabricated, and a systematic variation in microstructural properties such as lamellar width and thickness was observed with changing porosity. Dynamic impact tests were performed in a light-gas gun to examine the failure properties of these materials under high strain-rate loading. Nearly complete delamination was observed following impact, along with characteristic cracking across the lamellar width. Average fragment size decreases with increasing porosity, and a theoretical model was developed to explain this behavior based onmore » microstructural changes. Using an energy balance between kinetic, strain, and surface energies within a single lamella, we are able to accurately predict the characteristic fragment size using only standard material properties of bulk alumina.« less

Spectral Monitoring of NGC 1365: Nucleus and Variable ULX

NASA Technical Reports Server (NTRS)

Mushotzky, Richard (Technical Monitor); Fabbiano, G.

2004-01-01

A letter has been submitted to ApJ, and is in the final stages of revision on the spectral variability of the nuclear source. We presented multiple Chandra and XMM-Newton observations of the Seyfert Galaxy NGC 1365, which shows the most dramatic X-ray spectral changes observed so far in an AGN: the source switched from reflection dominated to Compton- thin and back in just 6 weeks. During this time the soft thermal component, arising from a 1-kpc region around the center, remained constant. The reflection component is constant at all timescales, and its flux is a fraction of 5% or higher of the direct 2-10 keV emission, implying the presence of thick gas covering a big fraction of the solid angle. The presence of this gas, and the hst variability time scale, suggest that the Compton-thick to Compton thin change is due to variation in the line-of-sight absorber, rather than to extreme intrinsic emission variability. We discuss a structure of the circumnuclear absorbed reflector which can explain the observed X-ray spectral and temporal properties. But these important results come only from scratching the surface of the data, since we did not need any detailed spectral analysis to distinguish between the Compton thick and Compton thin states of the source, the difference in both spectral shape and flux being huge.

Influence of Mechanical Properties of Aerial Shells made from Biodegradable Plastics on Smaller Fragmentation

NASA Astrophysics Data System (ADS)

Kudo, Makoto; Murata, Kenji; Kamata, Satoru; Hamada, Fumio

In this paper, a new aerial shell made of biodegradable plastics was developed and explosion tests were carried out using 2.5-10 gou-size firework aerial shells at a ground test site in order to observe the fragmentation. The dispersed fragments were then collected and their size and distribution measured. In order to monitor the fragmentation visually, a high-speed camera was used to film the ignition of the bursting charge and the scattering of the shell fragments. The shell fragments became much smaller, because mechanical properties of biodegradable plastics that were added improved polyvinyl alcohol (PVA) and chaff powder (CP). Fibrillation was seen in PBS/PVA/CP, and it seemed effective for mechanical properties. As a result, safer aerial shells which disperse into smaller fragments on explosion were successfully developed.

Spectral Study of Measles Epidemics: The Dependence of Spectral Gradient on the Population Size of the Community

NASA Astrophysics Data System (ADS)

Sumi, Ayako; Olsen, Lars Folke; Ohtomo, Norio; Tanaka, Yukio; Sawamura, Sadashi

2003-02-01

We have carried out spectral analysis of measles notifications in several communities in Denmark, UK and USA. The results confirm that each power spectral density (PSD) shows exponential characteristics, which are universally observed in the PSD for time series generated from nonlinear dynamical system. The exponential gradient increases with the population size. For almost all communities, many spectral lines observed in each PSD can be fully assigned to linear combinations of several fundamental periods, suggesting that the measles data are substantially noise-free. The optimum least squares fitting curve calculated using these fundamental periods essentially reproduces an underlying variation of the measles data, and an extension of the curve can be used to predict measles epidemics. For the communities with large population sizes, some PSD patterns obtained from segment time series analysis show a close resemblance to the PSD patterns at the initial stages of a period-doubling bifurcation process for the so-called susceptible/exposed/infectious/recovered (SEIR) model with seasonal forcing. The meaning of the relationship between the exponential gradient and the population size is discussed.

Structural, electronic and spectral properties of carborane-containing boron dipyrromethenes (BODIPYs): A first-principles study

NASA Astrophysics Data System (ADS)

Li, Xiaojun

2017-10-01

In this work, we reported the geometrical structures, electronic and spectral properties of the carborane-containing BODIPYs complexes using the density functional theory calculations. In two structures, the calculated main bond lengths and bond angels of structural framework are consistent with X-ray experiment, and the two BODIPYs complexes are thermodynamically and kinetically stable. The strongest DOS band is mainly dominated by the Bsbnd B and Bsbnd H σ-bonds of carborane fragment, whereas the π-type MOs on the pyrromethene fragment contribute to the high-energy DOS bands. Analysis of the AdNDP chemical bonding indicates that the carborane cage can be stabilized by eleven delocalized 3csbnd 2e and two delocalized 4csbnd 2e σ-bonds, while the pyrromethene fragment corresponds to five delocalized 3csbnd 2e π-bonds. In addition, the main characteristic peaks of the two simulated IR spectra for the BODIPYs complexes are properly assigned. Hopefully, all these results will be helpful for understanding the electronic structures, and further stimulate the study on the biological and medical applications.

NMR characterization of weak interactions between RhoGDI2 and fragment screening hits.

PubMed

Liu, Jiuyang; Gao, Jia; Li, Fudong; Ma, Rongsheng; Wei, Qingtao; Wang, Aidong; Wu, Jihui; Ruan, Ke

2017-01-01

The delineation of intrinsically weak interactions between novel targets and fragment screening hits has long limited the pace of hit-to-lead evolution. Rho guanine-nucleotide dissociation inhibitor 2 (RhoGDI2) is a novel target that lacks any chemical probes for the treatment of tumor metastasis. Protein-observed and ligand-observed NMR spectroscopy was used to characterize the weak interactions between RhoGDI2 and fragment screening hits. We identified three hits of RhoGDI2 using streamlined NMR fragment-based screening. The binding site residues were assigned using non-uniformly sampled C α - and H α -based three dimensional NMR spectra. The molecular docking to the proposed geranylgeranyl binding pocket of RhoGDI2 was guided by NMR restraints of chemical shift perturbations and ligand-observed transferred paramagnetic relaxation enhancement. We further validated the weak RhoGDI2-hit interactions using mutagenesis and structure-affinity analysis. Weak interactions between RhoGDI2 and fragment screening hits were delineated using an integrated NMR approach. Binders to RhoGDI2 as a potential anti-cancer target have been first reported, and their weak interactions were depicted using NMR spectroscopy. Our work highlights the powerfulness and the versatility of the integrative NMR techniques to provide valuable structural insight into the intrinsically weak interactions between RhoGDI2 and the fragment screening hits, which could hardly be conceived using other biochemical techniques. Copyright © 2016 Elsevier B.V. All rights reserved.

Corridors restore animal-mediated pollination in fragmented tropical forest landscapes

PubMed Central

Kormann, Urs; Scherber, Christoph; Tscharntke, Teja; Klein, Nadja; Larbig, Manuel; Valente, Jonathon J.; Hadley, Adam S.; Betts, Matthew G.

2016-01-01

Tropical biodiversity and associated ecosystem functions have become heavily eroded through habitat loss. Animal-mediated pollination is required in more than 94% of higher tropical plant species and 75% of the world's leading food crops, but it remains unclear if corridors avert deforestation-driven pollination breakdown in fragmented tropical landscapes. Here, we used manipulative resource experiments and field observations to show that corridors functionally connect neotropical forest fragments for forest-associated hummingbirds and increase pollen transfer. Further, corridors boosted forest-associated pollinator availability in fragments by 14.3 times compared with unconnected equivalents, increasing overall pollination success. Plants in patches without corridors showed pollination rates equal to bagged control flowers, indicating pollination failure in isolated fragments. This indicates, for the first time, that corridors benefit tropical forest ecosystems beyond boosting local species richness, by functionally connecting mutualistic network partners. We conclude that small-scale adjustments to landscape configuration safeguard native pollinators and associated pollination services in tropical forest landscapes. PMID:26817765