Controlling the intermediate structure of an ionic liquid for f-block element separations

DOE PAGES

Abney, Carter W.; Do, Changwoo; Luo, Huimin; ...

2017-04-19

Recent research has revealed molecular structure beyond the inner coordination sphere is essential in defining the performance of separations processes, but nevertheless remains largely unexplored. Here we apply small angle neutron scattering (SANS) and x-ray absorption fine structure (XAFS) spectroscopy to investigate the structure of an ionic liquid system studied for f-block element separations. SANS data reveal dramatic changes in the ionic liquid microstructure (~150 Å) which we demonstrate can be controlled by judicious selection of counter ion. Mesoscale structural features (> 500 Å) are also observed as a function of metal concentration. XAFS analysis supports formation of extended aggregatemore » structures, similar to those observed in traditional solvent extraction processes, and suggest additional parallels may be drawn from further study. As a result, achieving precise tunability over the intermediate features is an important development in controlling mesoscale structure and realizing advanced new forms of soft matter.« less

Anterior lens epithelium in intumescent white cataracts - scanning and transmission electron microscopy study.

PubMed

Andjelic, Sofija; Drašlar, Kazimir; Hvala, Anastazija; Hawlina, Marko

2016-02-01

Our purpose was to study the structure of the lens epithelial cells (LECs) of intumescent white cataracts (IC) in comparison with nuclear cataracts (NC) in order to investigate possible structural reasons for development of IC. The anterior lens capsule (aLC: basement membrane and associated LECs) were obtained from cataract surgery and prepared for scanning electron microscopy (SEM) and transmission electron microscopy (TEM). We observed by SEM that in IC, LEC swelling was pronounced with the clefts surrounding the groups of LECs. Another structural feature was spherical formations, that were observed on the apical side of LEC's, towards the fibre cell layer, both by SEM and TEM. Development of these structures, bulging out from the apical cell membrane of the LEC's and disrupting it, could be followed in steps towards the sphere formation. The degeneration of the lens epithelium and the structures of the aLC in IC similar to Morgagnian globules were also observed. None of these structural changes were observed in NC. We show by SEM and TEM that, in IC, LECs have pronounced structural features not observed in NC. This supports the hypothesis that the disturbed structure of LECs plays a role in water accumulation in the IC lens. We also suggest that, in IC, LECs produce bulging spheres that represent unique structures of degenerated material, extruded from the LEC.

Observations of fast-moving features in the debris disk of AU Mic on a three-year timescale: Confirmation and new discoveries

NASA Astrophysics Data System (ADS)

Boccaletti, A.; Sezestre, E.; Lagrange, A.-M.; Thébault, P.; Gratton, R.; Langlois, M.; Thalmann, C.; Janson, M.; Delorme, P.; Augereau, J.-C.; Schneider, G.; Milli, J.; Grady, C.; Debes, J.; Kral, Q.; Olofsson, J.; Carson, J.; Maire, A. L.; Henning, T.; Wisniewski, J.; Schlieder, J.; Dominik, C.; Desidera, S.; Ginski, C.; Hines, D.; Ménard, F.; Mouillet, D.; Pawellek, N.; Vigan, A.; Lagadec, E.; Avenhaus, H.; Beuzit, J.-L.; Biller, B.; Bonavita, M.; Bonnefoy, M.; Brandner, W.; Cantalloube, F.; Chauvin, G.; Cheetham, A.; Cudel, M.; Gry, C.; Daemgen, S.; Feldt, M.; Galicher, R.; Girard, J.; Hagelberg, J.; Janin-Potiron, P.; Kasper, M.; Coroller, H. Le; Mesa, D.; Peretti, S.; Perrot, C.; Samland, M.; Sissa, E.; Wildi, F.; Zurlo, A.; Rochat, S.; Stadler, E.; Gluck, L.; Origné, A.; Llored, M.; Baudoz, P.; Rousset, G.; Martinez, P.; Rigal, F.

2018-06-01

Context. The nearby and young M star AU Mic is surrounded by a debris disk in which we previously identified a series of large-scale arch-like structures that have never been seen before in any other debris disk and that move outward at high velocities. Aims: We initiated a monitoring program with the following objectives: (1) track the location of the structures and better constrain their projected speeds, (2) search for new features emerging closer in, and ultimately (3) understand the mechanism responsible for the motion and production of the disk features. Methods: AU Mic was observed at 11 different epochs between August 2014 and October 2017 with the IR camera and spectrograph of SPHERE. These high-contrast imaging data were processed with a variety of angular, spectral, and polarimetric differential imaging techniques to reveal the faintest structures in the disk. We measured the projected separations of the features in a systematic way for all epochs. We also applied the very same measurements to older observations from the Hubble Space Telescope (HST) with the visible cameras STIS and ACS. Results: The main outcomes of this work are (1) the recovery of the five southeastern broad arch-like structures we identified in our first study, and confirmation of their fast motion (projected speed in the range 4-12 km s-1); (2) the confirmation that the very first structures observed in 2004 with ACS are indeed connected to those observed later with STIS and now SPHERE; (3) the discovery of two new very compact structures at the northwest side of the disk (at 0.40'' and 0.55'' in May 2015) that move to the southeast at low speed; and (4) the identification of a new arch-like structure that might be emerging at the southeast side at about 0.4'' from the star (as of May 2016). Conclusions: Although the exquisite sensitivity of SPHERE allows one to follow the evolution not only of the projected separation, but also of the specific morphology of each individual feature, it remains difficult to distinguish between possible dynamical scenarios that may explain the observations. Understanding the exact origin of these features, the way they are generated, and their evolution over time is certainly a significant challenge in the context of planetary system formation around M stars. Based on data collected at the European Southern Observatory, Chile under programs 060.A-9249, 095.C-0298, 096.C-0625, 097.C-0865, 097.C-0813, 598.C-0359.A movie associated to Fig. 6 is available at http://https://www.aanda.org

UbSRD: The Ubiquitin Structural Relational Database.

PubMed

Harrison, Joseph S; Jacobs, Tim M; Houlihan, Kevin; Van Doorslaer, Koenraad; Kuhlman, Brian

2016-02-22

The structurally defined ubiquitin-like homology fold (UBL) can engage in several unique protein-protein interactions and many of these complexes have been characterized with high-resolution techniques. Using Rosetta's structural classification tools, we have created the Ubiquitin Structural Relational Database (UbSRD), an SQL database of features for all 509 UBL-containing structures in the PDB, allowing users to browse these structures by protein-protein interaction and providing a platform for quantitative analysis of structural features. We used UbSRD to define the recognition features of ubiquitin (UBQ) and SUMO observed in the PDB and the orientation of the UBQ tail while interacting with certain types of proteins. While some of the interaction surfaces on UBQ and SUMO overlap, each molecule has distinct features that aid in molecular discrimination. Additionally, we find that the UBQ tail is malleable and can adopt a variety of conformations upon binding. UbSRD is accessible as an online resource at rosettadesign.med.unc.edu/ubsrd. Copyright © 2015 Elsevier Ltd. All rights reserved.

Volcanology and morphology

NASA Technical Reports Server (NTRS)

Bryan, W. B.

1976-01-01

Apollo 15 photographs of the southern parts of Serenitatis and Imbrium were used for a study of the morphology and distribution of wrinkle ridges. Volcanic and structural features along the south margin of Serenitatis were also studied, including the Dawes basalt cinder cones. Volcanic and structural features in crater Aitken were investigated as well. Study of crater Goclenius showed a close relationship between morphology of the impact crater and grabens which tend to parallel directions of the lunar grid. Similar trends were observed in the walls of crater Tsiolkovsky and other linear structures. Small craters of possible volcanic origin were also studied. Possible cinder cones were found associated with the Dawes basalt and in the floor of craters Aitken and Goclenius. Small pit craters were observed in the floors of these craters. Attempts were made to obtain contour maps of specific small features and to compare Orbiter and Apollo photographs to determine short term changes associated with other processes.

Phosphatization Associated Features of Ferromanganese Crusts at Lemkein Seamount, Marshall Islands

NASA Astrophysics Data System (ADS)

Choi, J.; Lee, I.; Park, B. K.; Kim, J.

2014-12-01

Old layers of ferromanganese crusts, especially in the Pacific Ocean, have been affected by phosphatization. Ferromanganese crusts on Lemkein seamount in Marshall Islands also are phosphatized (3.3 to 4.2 wt % of P concentration). Furthermore, they have characteristic features that are different from other ferromanganese crusts. These features occur near the phosphorite, which were thought to fill the pore spaces of ferromanganese crusts. Inside the features, ferromanganese crusts are botryoidally precipitated from the round-boundary. The features of the phosphatized lower crusts of Lemkein seamount are observed using microscope and SEM. Elemental compositions of the selected samples were analyzed by SEM-EDS. Based on the observation and analysis of samples, three characteristic structures are identified: (1) phosphate-filled circles, (2) tongue-shaped framboidal crust, and (3) massive framboidal crust. The phosphate-filled circles are mostly composed of phosphorite, and they include trace fossils such as foraminifera. Phosphatized ferromanganese crusts exist at the boundary of this structure. The tongue-shaped crust is connected with the lips downward, and ferromanganese crusts inside the tongue show distinct growth rim. The massive framboidal crust is located below the tongue. Ferromanganese crusts in the massive framboidal crust are enveloped by phosphate, and some of the crusts are phosphatized. Around the structures, Mn oxide phase is concentrated as a shape of corona on BSE image. All of the structures are in the phosphatized crusts that show columnar growth of ferromanganese crusts and have sub-parallel lamination. These observation and chemical analysis of the ferromanganese crusts can provide a clue of diagenetic processes during the formation of ferromanganese crusts.

Observational Evidence of a Flux Rope within a Sunspot Umbra

DOE Office of Scientific and Technical Information (OSTI.GOV)

Guglielmino, Salvo L.; Zuccarello, Francesca; Romano, Paolo, E-mail: salvo.guglielmino@oact.inaf.it

We observed an elongated filamentary bright structure inside the umbra of the big sunspot in active region NOAA 12529, which differs from the light bridges usually observed in sunspots for its morphology, magnetic configuration, and velocity field. We used observations taken with the Solar Dynamic Observatory satellite to characterize this feature. Its lifetime is 5 days, during which it reaches a maximum length of about 30″. In the maps of the vertical component of the photospheric magnetic field, a portion of the feature has a polarity opposite to that of the hosting sunspot. At the same time, in the entiremore » feature the horizontal component of the magnetic field is about 2000 G, substantially stronger than in the surrounding penumbral filaments. Doppler velocity maps reveal the presence of both upward and downward plasma motions along the structure at the photospheric level. Moreover, looking at the chromospheric level, we noted that it is located in a region corresponding to the edge of a small filament that seems rooted in the sunspot umbra. Therefore, we interpreted the bright structure as the photospheric counterpart of a flux rope touching the sunspot and giving rise to penumbral-like filaments in the umbra.« less

Bright features in Neptune on 2013-2015 from ground-based observations with small (40 cm) and large telescopes (10 m)

NASA Astrophysics Data System (ADS)

Hueso, Ricardo; Delcroix, Marc; Baranec, Christoph; Sánchez-Lavega, Agustín; María Gómez-Forrellad, Josep; Félix Rojas, Jose; Luszcz-Cook, Statia; de Pater, Imke; de Kleer, Katherine; Colas, François; Guarro, Joan; Goczynski, Peter; Jones, Paul; Kivits, Willem; Maxson, Paul; Phillips, Michael; Sussenbach, John; Wesley, Anthony; Hammel, Heidi B.; Pérez-Hoyos, Santiago; Mendikoa, Iñigo; Riddle, Reed; Law, Nicholas M.; Sayanagi, Kunio

2015-11-01

Observations of Neptune over the last few years obtained with small telescopes (30-50 cm) have resulted in several detections of bright features on the planet. In 2013, 2014 and 2015, different observers have repeatedly observed features of high contrast at Neptune’s mid-latitudes using long-pass red filters. This success at observing Neptune clouds with such small telescopes is due to the presence of strong methane absorption bands in Neptune’s spectra at red and near infrared wavelengths; these bands provide good contrast for elevated cloud structures. In each case, the atmospheric features identified in the images survived at least a few weeks, but were essentially much more variable and apparently shorter-lived, than the large convective system recently reported on Uranus [de Pater et al. 2015]. The latest and brightest spot on Neptune was first detected on July 13th 2015 with the 2.2m telescope at Calar Alto observatory with the PlanetCam UPV/EHU instrument. The range of wavelengths covered by PlanetCam (from 350 nm to the H band including narrow-band and wide-band filters in and out of methane bands) allows the study of the vertical cloud structure of this bright spot. In particular, the spot is particularly well contrasted at the H band where it accounted to a 40% of the total planet brightness. Observations obtained with small telescopes a few days later provide a good comparison that can be used to scale similar structures in 2013 and 2014 that were observed with 30-50 cm telescopes and the Robo-AO instrument at Palomar observatory. Further high-resolution observations of the 2015 event were obtained in July 25th with the NIRC2 camera in the Keck 2 10-m telescope. These images show the bright spot as a compact bright feature in H band with a longitudinal size of 8,300 km and a latitudinal extension of 5,300 km, well separated from a nearby bright band. The ensemble of observations locate the structure at -41º latitude drifting at about +24.27º/day or -92.3 m/s consistently with the zonal winds. This work demonstrates excellent opportunities for pro-am collaboration in the study of Neptune and the value of nearly continuous monitoring of the planet by a broad network of amateur collaborators.

Observations of the structure and evolution of solar flares with a soft X-ray telescope

NASA Technical Reports Server (NTRS)

Vorpahl, J. A.; Gibson, E. G.; Landecker, P. B.; Mckenzie, D. L.; Underwood, J. M.

1975-01-01

Soft X ray flare events were observed with the S-056 X-ray telescope that was part of the ATM complement of instruments aboard SKYLAB. Analyses of these data are reported. The observations are summarized and a detailed discussion of the X-ray flare structures is presented. The data indicated that soft X-ray emitted by a flare come primarily from an intense well-defined core surrounded by a region of fainter, more diffuse emission. An analysis of flare evolution indicates evidence for preliminary heating and energy release prior to the main phase of the flare. Core features are found to be remarkably stable and retain their shape throughout a flare. Most changes in the overall configuration seem to be result of the appearance, disappearance or change in brightness of individual features, rather than the restructuring or reorientation of these features. Brief comparisons with several theories are presented.

Simulation and observation of line-slip structures in columnar structures of soft spheres

NASA Astrophysics Data System (ADS)

Winkelmann, J.; Haffner, B.; Weaire, D.; Mughal, A.; Hutzler, S.

2017-07-01

We present the computed phase diagram of columnar structures of soft spheres under pressure, of which the main feature is the appearance and disappearance of line slips, the shearing of adjacent spirals, as pressure is increased. A comparable experimental observation is made on a column of bubbles under forced drainage, clearly exhibiting the expected line slip.

Simulation and observation of line-slip structures in columnar structures of soft spheres.

PubMed

Winkelmann, J; Haffner, B; Weaire, D; Mughal, A; Hutzler, S

2017-07-01

We present the computed phase diagram of columnar structures of soft spheres under pressure, of which the main feature is the appearance and disappearance of line slips, the shearing of adjacent spirals, as pressure is increased. A comparable experimental observation is made on a column of bubbles under forced drainage, clearly exhibiting the expected line slip.

Temporal Evolution of Ion Spectral Structures During a Geomagnetic Storm: Observations and Modeling

NASA Astrophysics Data System (ADS)

Ferradas, C. P.; Zhang, J.-C.; Spence, H. E.; Kistler, L. M.; Larsen, B. A.; Reeves, G. D.; Skoug, R. M.; Funsten, H. O.

2018-01-01

Using the Van Allen Probes/Helium, Oxygen, Proton, and Electron mass spectrometer, we perform a case study of the temporal evolution of ion spectral structures observed in the energy range of 1 to 50 keV throughout the geomagnetic storm of 2 October 2013. The ion spectral features are observed near the inner edge of the plasma sheet and are signatures of fresh transport from the plasma sheet into the inner magnetosphere. We find that the characteristics of the ion structures are determined by the intensity of the convection electric field. Prior to the beginning of the storm, the plasma sheet inner edge exhibits narrow nose spectral structures that vary little in energy across L values. Ion access to the inner magnetosphere during these times is limited to the nose energy bands. As convection is enhanced and large amounts of plasma are injected from the plasma sheet during the main phase of the storm, ion access occurs at a wide energy range, as no nose structures are observed. As the magnetosphere recovers from the storm, single noses and then multiple noses are observed once again. We use a model of ion drift and losses due to charge exchange to simulate the ion spectra and gain insight into the main observed features.

Temporal evolution of ion spectral structures during a geomagnetic storm: Observations and modeling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ferradas Alva, Cristian Pablo; Zhang, J.-C.; Spence, H. E.

Using the Van Allen Probes/Helium, Oxygen, Proton, and Electron (HOPE) mass spectrometer, we perform a case study of the temporal evolution of ion spectral structures observed in the energy range of 1- ~50 keV throughout the geomagnetic storm of 2 October 2013. The ion spectral features are observed near the inner edge of the plasma sheet and are signatures of fresh transport from the plasma sheet into the inner magnetosphere. We find that the characteristics of the ion structures are determined by the intensity of the convection electric field. Prior to the beginning of the storm, the plasma sheet innermore » edge exhibits narrow nose spectral structures that vary little in energy across L values. Ion access to the inner magnetosphere during these times is limited to the nose energy bands. As convection is enhanced and large amounts of plasma are injected from the plasma sheet during the main phase of the storm, ion access occurs at a wide energy range, as no nose structures are observed. Here, as the magnetosphere recovers from the storm, single noses and then multiple noses are observed once again. Lastly, we use a model of ion drift and losses due to charge exchange to simulate the ion spectra and gain insight into the main observed features.« less

Temporal evolution of ion spectral structures during a geomagnetic storm: Observations and modeling

DOE PAGES

Ferradas Alva, Cristian Pablo; Zhang, J.-C.; Spence, H. E.; ...

2017-12-13

Using the Van Allen Probes/Helium, Oxygen, Proton, and Electron (HOPE) mass spectrometer, we perform a case study of the temporal evolution of ion spectral structures observed in the energy range of 1- ~50 keV throughout the geomagnetic storm of 2 October 2013. The ion spectral features are observed near the inner edge of the plasma sheet and are signatures of fresh transport from the plasma sheet into the inner magnetosphere. We find that the characteristics of the ion structures are determined by the intensity of the convection electric field. Prior to the beginning of the storm, the plasma sheet innermore » edge exhibits narrow nose spectral structures that vary little in energy across L values. Ion access to the inner magnetosphere during these times is limited to the nose energy bands. As convection is enhanced and large amounts of plasma are injected from the plasma sheet during the main phase of the storm, ion access occurs at a wide energy range, as no nose structures are observed. Here, as the magnetosphere recovers from the storm, single noses and then multiple noses are observed once again. Lastly, we use a model of ion drift and losses due to charge exchange to simulate the ion spectra and gain insight into the main observed features.« less

Structure of Saturn's Rings from Cassini Diametric Radio Occultations

NASA Astrophysics Data System (ADS)

Marouf, E.; French, R.; Rappaport, N.; Kliore, A.; Flasar, M.; Nagy, A.; McGhee, C.; Schinder, P.; Anabtawi, A.; Asmar, S.; Barbinis, E.; Fleischman, D.; Goltz, G.; Johnston, D.; Rochblatt, D.; Thomson, F.; Wong, K.

2005-08-01

Cassini orbits around Saturn were designed to provide eight optimized radio occultation observations of Saturn's rings during summer, 2005. Three monochromatic radio signals (0.94, 3.6, and 13 cm-wavelength) were transmitted by Cassini through the rings and observed at multiple stations of the NASA Deep Space Network. A rich data set has been collected. Detailed structure of Ring B is revealed for the first time, including multi-feature dense ''core'' ˜ 6,000 km wide of normal optical depth > 4.3, a ˜ 5,500 km region of oscillations in optical depth ( ˜ 1.7 to ˜ 3.4) over characteristic radial scales of few hundred kilometers interior to the core, and a ˜ 5,000 km region exterior to the core of similar nature but smaller optical depth fluctuation ( ˜ 2.2 to ˜ 3.3). The innermost ˜ 7,000 km region is the thinnest (mean optical depth ˜ 1.2), and includes two unusually uniform regions and a prominent density wave. With few exceptions, the structure is nearly identical for the three radio signals (when detectable), indicating that Ring B is relatively devoid of centimeters and smaller size particles. The structure is largely circularly symmetric, except for radius > ˜ 116,600 km. In Ring A, numerous (> 40) density waves are clearly observed at multiple longitudes, different average background optical depth is observed among different occultations suggesting that the azimuthal asymmetry extends over most Ring A, and strong dependence of the observed structure on wavelength implies increase in the abundance of centimeter and smaller size particles with increasing radius. Multiple longitude observations of Ring C and the Cassini Division structure reveal remarkable variability of gaps and their embedded narrow eccentric ringlets, and a wake/wave like feature interior to the gap at ˜ 118,200 km (embedded moonlet?). Wavelength dependent structure of Ring C implies abundance of centimeter size particles everywhere and sorting by size within dense embedded features.

Detection of fibrils associated with Rickettsia rickettsii.

PubMed

Todd, W J; Burgdorfer, W; Wray, G P

1983-09-01

The ultrastructural appearance of the "halozone" formed at the interface between the spotted fever agent Rickettsia rickettsii and the cytoplasm of persistently infected cultured vole cells (Microtus pennsylvanicus) was studied by transmission electron microscopy. In sections of epoxy-embedded specimens stained with uranyl acetate and lead citrate, the halozone appeared clear and devoid of ultrastructural features. However, when unembedded preparations of whole infected cells were examined at 1,000 kV, fine structural features were observed within the halozone. These features, associated with the rickettsial outer membrane, were more clearly detectable when the infected cells were extracted with the detergent Triton X-100 before fixation. Under such conditions, long extensions of the rickettsial outer membrane, microfilament-like structures attached to that membrane, and extensive attachments between adjacent rickettsiae were seen. The fine structural features within the rickettsial halozone were also seen at 75 kV when unembedded sections were prepared from polyethylene glycol-embedded specimens. Thus, epoxy-embedding medium obscures the fine structural features within the halozone surrounding the rickettsiae in infected cells.

Detection of fibrils associated with Rickettsia rickettsii.

PubMed Central

Todd, W J; Burgdorfer, W; Wray, G P

1983-01-01

The ultrastructural appearance of the "halozone" formed at the interface between the spotted fever agent Rickettsia rickettsii and the cytoplasm of persistently infected cultured vole cells (Microtus pennsylvanicus) was studied by transmission electron microscopy. In sections of epoxy-embedded specimens stained with uranyl acetate and lead citrate, the halozone appeared clear and devoid of ultrastructural features. However, when unembedded preparations of whole infected cells were examined at 1,000 kV, fine structural features were observed within the halozone. These features, associated with the rickettsial outer membrane, were more clearly detectable when the infected cells were extracted with the detergent Triton X-100 before fixation. Under such conditions, long extensions of the rickettsial outer membrane, microfilament-like structures attached to that membrane, and extensive attachments between adjacent rickettsiae were seen. The fine structural features within the rickettsial halozone were also seen at 75 kV when unembedded sections were prepared from polyethylene glycol-embedded specimens. Thus, epoxy-embedding medium obscures the fine structural features within the halozone surrounding the rickettsiae in infected cells. Images PMID:6411620

Ion Spectral Structures Observed by the Van Allen Probes and Cluster

NASA Astrophysics Data System (ADS)

Ferradas, C.; Zhang, J.; Luo, H.; Kistler, L. M.; Spence, H. E.; Larsen, B.; Skoug, R. M.; Funsten, H. O.; Reeves, G. D.

2014-12-01

During the last decades several missions have recorded the presence of dynamic spectral features of energetic ions in the inner magnetosphere. Previous studies have revealed single "nose-like" structures occurring alone and simultaneous nose-like structures (up to three). In this study we also include signatures of new types of ion structure, namely "trunk-like" and "tusk-like" structures. All the ion structures are named after the characteristic shapes of energy bands or gaps in the energy-time spectrograms of in situ measured ion fluxes. They constitute the observational signatures of ion acceleration, transport, and loss in the global magnetosphere. Multi-spacecraft analysis of these structures is important to understand their spatial distribution and temporal evolution. Mass spectrometers onboard Cluster (in a polar orbit) and the Van Allen Probes (in an equatorial orbit) measure energetic hydrogen, helium, and oxygen ions near the inner edge of the plasma sheet, where these ion structures are observed. We present a statistical study of the ion structures, using >1-year measurements from the two missions during the Van Allen Probes era. The results provide important details about the spatial distribution (dependence on geocentric distance and magnetic local time), spectral features of the structures (e.g., characteristic energy and differences among species), and geomagnetic and solar wind conditions under which these structures occur.

Coma morphology of comet 67P controlled by insolation over irregular nucleus

NASA Astrophysics Data System (ADS)

Shi, X.; Hu, X.; Mottola, S.; Sierks, H.; Keller, H. U.; Rose, M.; Güttler, C.; Fulle, M.; Fornasier, S.; Agarwal, J.; Pajola, M.; Tubiana, C.; Bodewits, D.; Barbieri, C.; Lamy, P. L.; Rodrigo, R.; Koschny, D.; Barucci, M. A.; Bertaux, J.-L.; Bertini, I.; Boudreault, S.; Cremonese, G.; Da Deppo, V.; Davidsson, B.; Debei, S.; De Cecco, M.; Deller, J.; Groussin, O.; Gutiérrez, P. J.; Hviid, S. F.; Ip, W.-H.; Jorda, L.; Knollenberg, J.; Kovacs, G.; Kramm, J.-R.; Kührt, E.; Küppers, M.; Lara, L. M.; Lazzarin, M.; Lopez-Moreno, J. J.; Marzari, F.; Naletto, G.; Oklay, N.; Toth, I.; Vincent, J.-B.

2018-05-01

While the structural complexity of cometary comae is already recognizable from telescopic observations1, the innermost region, within a few radii of the nucleus, was not resolved until spacecraft exploration became a reality2,3. The dust coma displays jet-like features of enhanced brightness superposed on a diffuse background1,4,5. Some features can be traced to specific areas on the nucleus, and result conceivably from locally enhanced outgassing and/or dust emission6-8. However, diffuse or even uniform activity over topographic concavity can converge to produce jet-like features9,10. Therefore, linking observed coma morphology to the distribution of activity on the nucleus is difficult11,12. Here, we study the emergence of dust activity at sunrise on comet 67P/Churyumov-Gerasimenko using high-resolution, stereo images from the OSIRIS camera onboard the Rosetta spacecraft, where the sources and formation of the jet-like features are resolved. We perform numerical simulations to show that the ambient dust coma is driven by pervasive but non-uniform water outgassing from the homogeneous surface layer. Physical collimations of gas and dust flows occur at local maxima of insolation and also via topographic focusing. Coma structures are projected to exhibit jet-like features that vary with the perspective of the observer. For an irregular comet such as 67P/Churyumov-Gerasimenko, near-nucleus coma structures can be concealed in the shadow of the nucleus, which further complicates the picture.

Discrete cloud structure on Neptune

NASA Technical Reports Server (NTRS)

Hammel, H. B.

1989-01-01

Recent CCD imaging data for the discrete cloud structure of Neptune shows that while cloud features at CH4-band wavelengths are manifest in the southern hemisphere, they have not been encountered in the northern hemisphere since 1986. A literature search has shown the reflected CH4-band light from the planet to have come from a single discrete feature at least twice in the last 10 years. Disk-integrated photometry derived from the imaging has demonstrated that a bright cloud feature was responsible for the observed 8900 A diurnal variation in 1986 and 1987.

The structure and rainfall features of Tropical Cyclone Rammasun (2002)

NASA Astrophysics Data System (ADS)

Ma, Leiming; Duan, Yihong; Zhu, Yongti

2004-12-01

Tropical Rainfall Measuring Mission (TRMM) data [TRMM Microwave Imager/Precipitation Radar/Visible and Infrared Scanner (TMI/PR/VIRS)] and a numerical model are used to investigate the structure and rainfall features of Tropical Cyclone (TC) Rammasun (2002). Based on the analysis of TRMM data, which are diagnosed together with NCEP/AVN [Aviation (global model)] analysis data, some typical features of TC structure and rainfall are preliminary discovered. Since the limitations of TRMM data are considered for their time resolution and coverage, the world observed by TRMM at several moments cannot be taken as the representation of the whole period of the TC lifecycle, therefore the picture should be reproduced by a numerical model of high quality. To better understand the structure and rainfall features of TC Rammasun, a numerical simulation is carried out with mesoscale model MM5 in which the validations have been made with the data of TRMM and NCEP/AVN analysis.

Influence of culture medium growth variables on Ganoderma lucidum exopolysaccharides structural features.

PubMed

Fraga, Irene; Coutinho, João; Bezerra, Rui M; Dias, Albino A; Marques, Guilhermina; Nunes, Fernando M

2014-10-13

In this work the effect of carbon and nitrogen levels and initial pH of the wheat extract culture medium of submerged culture of Ganoderma lucidum on the amount, purity and structural features of exopolysaccharides (EPS) were studied. A low peptone level (1.65 g L(-1)) favored mycelium biomass, EPS purity, but a higher supply of peptone (4.80 g L(-1)) is needed for maximum EPS production. The carbohydrate composition of the EPS and structural features also changed significantly according to the different growing conditions, being observed significant differences in the (1 → 3)/(1 → 4)-Glcp ratio and also on the branching degree of EPS. As the biological activities of EPS are highly dependent on the polysaccharide structural features, this variability can have implications on the EPS biological activities, but can also be used advantageously to produce tailor made polysaccharides with specific applications. Copyright © 2014 Elsevier Ltd. All rights reserved.

An open workflow to generate “MS Ready” structures and improve non-targeted mass spectrometry (ACS Fall 1 of 3)

EPA Science Inventory

High-throughput non-targeted analyses (NTA) rely on chemical reference databases for tentative identification of observed chemical features. Many of these databases and online resources incorporate chemical structure data not in a form that is readily observed by mass spectromet...

The Origins of Magnetic Structure in the Corona and Wind

NASA Technical Reports Server (NTRS)

Antiochos, Spiro K.

2010-01-01

One of the most important and most puzzling features of the coronal magnetic field is that it appears to have smooth magnetic structure with little evidence for non-potentiality except at two special locations: photospheric polarity inversions lines. (non-potentiality observed as a filament channel) and coronal hole boundaries, (observed as the slow solar wind). This characteristic feature of the closed-field corona is highly unexpected given that its magnetic field is continuously tangled by photospheric motions. Although reconnection can eliminate some of the injected structure, it cannot destroy the helicity, which should build up to produce observable complexity. I propose that an inverse cascade process transports the injected helicity from the interior of closed flux regions to their boundaries inversion lines and coronal holes, creating both filament channels and the slow wind. We describe how the helicity is injected and transported and calculate the relevant rates. I argue that one process, helicity transport, can explain both the observed lack and presence of structure in the coronal magnetic field. This work has been supported by the NASA HTP, SR&T, and LWS programs.

The structure of people's hair.

PubMed

Yang, Fei-Chi; Zhang, Yuchen; Rheinstädter, Maikel C

2014-01-01

Hair is a filamentous biomaterial consisting mainly of proteins in particular keratin. The structure of human hair is well known: the medulla is a loosely packed, disordered region near the centre of the hair surrounded by the cortex, which contains the major part of the fibre mass, mainly consisting of keratin proteins and structural lipids. The cortex is surrounded by the cuticle, a layer of dead, overlapping cells forming a protective layer around the hair. The corresponding structures have been studied extensively using a variety of different techniques, such as light, electron and atomic force microscopes, and also X-ray diffraction. We were interested in the question how much the molecular hair structure differs from person to person, between male and female hair, hair of different appearances such as colour and waviness. We included hair from parent and child, identical and fraternal twins in the study to see if genetically similar hair would show similar structural features. The molecular structure of the hair samples was studied using high-resolution X-ray diffraction, which covers length scales from molecules up to the organization of secondary structures. Signals due to the coiled-coil phase of α-helical keratin proteins, intermediate keratin filaments in the cortex and from the lipid layers in the cell membrane complex were observed in the specimen of all individuals, with very small deviations. Despite the relatively small number of individuals (12) included in this study, some conclusions can be drawn. While the general features were observed in all individuals and the corresponding molecular structures were almost identical, additional signals were observed in some specimen and assigned to different types of lipids in the cell membrane complex. Genetics seem to play a role in this composition as identical patterns were observed in hair from father and daughter and identical twins, however, not for fraternal twins. Identification and characterization of these features is an important step towards the detection of abnormalities in the molecular structure of hair as a potential diagnostic tool for certain diseases.

THE FORMATION OF FILAMENTARY BUNDLES IN TURBULENT MOLECULAR CLOUDS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moeckel, Nickolas; Burkert, Andreas, E-mail: nickolas1@gmail.com, E-mail: burkert@usm.uni-muenchen.de

2015-07-01

The classical picture of a star-forming filament is a near-equilibrium structure with its collapse dependent on its gravitational criticality. Recent observations have complicated this picture, revealing filaments to be a mess of apparently interacting subfilaments with transsonic internal velocity dispersions and mildly supersonic intra-subfilament dispersions. How structures like this form is unresolved. Here, we study the velocity structure of filamentary regions in a simulation of a turbulent molecular cloud. We present two main findings. First, the observed complex velocity features in filaments arise naturally in self-gravitating hydrodynamic simulations of turbulent clouds without the need for magnetic or other effects. Second,more » a region that is filamentary only in projection and is in fact made of spatially distinct features can display these same velocity characteristics. The fact that these disjoint structures can masquerade as coherent filaments in both projection and velocity diagnostics highlights the need to continue developing sophisticated filamentary analysis techniques for star formation observations.« less

ATM observations - X-ray results. [solar coronal structure from Skylab experiments

NASA Technical Reports Server (NTRS)

Vaiana, G. S.; Zombeck, M.; Krieger, A. S.; Timothy, A. F.

1976-01-01

Preliminary results of the solar X-ray observations from Skylab are reviewed which indicate a highly structured nature for the corona, with closed magnetic-loop structures over a wide range of size scales. A description of the S-054 experiments is provided, and values are given for the parameters - including size, density, and temperature - describing a variety of typical coronal features. The structure and evolution of active regions, coronal holes, and bright points are discussed.

Earth Observations taken by the Expedition 17 Crew

NASA Image and Video Library

2008-10-21

ISS017-E-020538 (21 Oct. 2008) --- Arkenu Craters 1 and 2 in Libya are featured in this image photographed by an Expedition 17 crewmember on the International Space Station. Geologists often study features on Earth, such as impact craters, to gain insight into processes that occur on other planets. On Earth, more than 150 impact craters have been identified on the continents, but only a few of these are classified as double impact craters. One such example, the Arkenu Craters in northern Africa, is shown in this image. Arkenu 1 and 2 are double impact structures located in eastern Libya (22.04 degrees north latitude and 23.45 degrees east longitude) in the Sahara desert, with diameters of approximately 6.8 kilometers and 10.3 kilometers, respectively. The craters are unusual in that they both exhibit concentric annular ridge structures (gray circles in the image indicate the position of the outermost visible ridges). In many terrestrial complex craters these features are highly eroded and no longer visible. While the circular structure of these features had been noted, the impact origin hypothesis was strengthened in December 2003 when a field team observed shatter cones -- conical-shaped features in rocks created by the high shock pressures generated during impact. Large outcrops of impact breccias -- a jumble of rock fragments generated at the impact site that are now cemented together into an identifiable rock layer -- were also observed by the field team. Two impactors, each approximately 500 meters in diameter, are thought to have created the craters. According to scientists, the age of the impact event has been dated as occurring less than 140 million years ago. While the presence of shatter cones and impact breccias is generally considered to be strong evidence for meteor impact, some scientists now question the interpretation of these features observed at the Arkenu structures and suggest that they were caused by erosive and volcanic processes. At present, both craters are being crossed by linear dunes extending northeast-southwest -- the superposition of the dunes across the annular ridges indicates that they are much younger than the craters.

Geological and Structural Patterns on Titan Enhanced Through Cassini's SAR PCA and High-Resolution Radiometry

NASA Astrophysics Data System (ADS)

Paganelli, F.; Schubert, G.; Lopes, R. M. C.; Malaska, M.; Le Gall, A. A.; Kirk, R. L.

2016-12-01

The current SAR data coverage on Titan encompasses several areas in which multiple radar passes are present and overlapping, providing additional information to aid the interpretation of geological and structural features. We exploit the different combinations of look direction and variable incidence angle to examine Cassini Synthetic Aperture RADAR (SAR) data using the Principal Component Analysis (PCA) technique and high-resolution radiometry, as a tool to aid in the interpretation of geological and structural features. Look direction and variable incidence angle is of particular importance in the analysis of variance in the images, which aid in the perception and identification of geological and structural features, as extensively demonstrated in Earth and planetary examples. The PCA enhancement technique uses projected non-ortho-rectified SAR imagery in order to maintain the inherent differences in scattering and geometric properties due to the different look directions, while enhancing the geometry of surface features. The PC2 component provides a stereo view of the areas in which complex surface features and structural patterns can be enhanced and outlined. We focus on several areas of interest, in older and recently acquired flybys, in which evidence of geological and structural features can be enhanced and outlined in the PC1 and PC2 components. Results of this technique provide enhanced geometry and insights into the interpretation of the observed geological and structural features, thus allowing a better understanding towards the geology and tectonics on Titan.

Photoluminescence spectroscopy and the effective mass theory of strained (In,Ga)As/GaAs heterostructures grown on (112)B GaAs substrates

NASA Technical Reports Server (NTRS)

Henderson, R. H.; Sun, D.; Towe, E.

1995-01-01

The photoluminescence characteristics of pseudomorphic In(0.19)Ga(0.81)As/GaAs quantum well structures grown on both the conventional (001) and the unconventional (112)B GaAs substrate are investigated. It is found that the emission spectra of the structures grown on the (112)B surface exhibit some spectral characteristics not observed on similar structures grown on the (001) surface. A spectral blue shift of the e yields hh1 transition with increasing optical pump intensity is observed for the quantum wells on the (112) surface. This shift is interpreted to be evidence of a strain-induced piezoelectric field. A second spectral feature located within the band gap of the In(0.19)Ga(0.81)As layer is also observed for the (112) structure; this feature is thought to be an impurity-related emission. The expected transition energies of the quantum well structures are calculated using the effective mass theory based on the 4 x 4 Luttinger valence band Hamiltonian, and related strain Hamiltonian.

Corrected Article: Simulation and observation of line-slip structures in columnar structures of soft spheres [Phys. Rev. E 96, 012610 (2017)

NASA Astrophysics Data System (ADS)

Winkelmann, J.; Haffner, B.; Weaire, D.; Mughal, A.; Hutzler, S.

2017-07-01

We present the computed phase diagram of columnar structures of soft spheres under pressure, of which the main feature is the appearance and disappearance of line slips, the shearing of adjacent spirals, as pressure is increased. A comparable experimental observation is made on a column of bubbles under forced drainage, clearly exhibiting the expected line slip.

Three-dimensional radar imaging of structures and craters in the Martian polar caps.

PubMed

Putzig, Nathaniel E; Smith, Isaac B; Perry, Matthew R; Foss, Frederick J; Campbell, Bruce A; Phillips, Roger J; Seu, Roberto

2018-07-01

Over the last decade, observations acquired by the Shallow Radar (SHARAD) sounder on individual passes of the Mars Reconnaissance Orbiter have revealed the internal structure of the Martian polar caps and provided new insights into the formation of the icy layers within and their relationship to climate. However, a complete picture of the cap interiors has been hampered by interfering reflections from off-nadir surface features and signal losses associated with sloping structures and scattering. Foss et al. (2017) addressed these limitations by assembling three-dimensional data volumes of SHARAD observations from thousands of orbital passes over each polar region and applying geometric corrections simultaneously. The radar volumes provide unprecedented views of subsurface features, readily imaging structures previously inferred from time-intensive manual analysis of single-orbit data (e.g., trough-bounding surfaces, a buried chasma, and a basal unit in the north, massive carbon-dioxide ice deposits and discontinuous layered sequences in the south). Our new mapping of the carbon-dioxide deposits yields a volume of 16,500 km 3 , 11% larger than the prior estimate. In addition, the radar volumes newly reveal other structures, including what appear to be buried impact craters with no surface expression. Our first assessment of 21 apparent craters at the base of the north polar layered deposits suggests a Hesperian age for the substrate, consistent with that of the surrounding plains as determined from statistics of surface cratering rates. Planned mapping of similar features throughout both polar volumes may provide new constraints on the age of the icy layered deposits. The radar volumes also provide new topographic data between the highest latitudes observed by the Mars Orbiter Laser Altimeter and those observed by SHARAD. In general, mapping of features in these radar volumes is placing new constraints on the nature and evolution of the polar deposits and associated climate changes.

Three-dimensional radar imaging of structures and craters in the Martian polar caps

NASA Astrophysics Data System (ADS)

Putzig, Nathaniel E.; Smith, Isaac B.; Perry, Matthew R.; Foss, Frederick J.; Campbell, Bruce A.; Phillips, Roger J.; Seu, Roberto

2018-07-01

Over the last decade, observations acquired by the Shallow Radar (SHARAD) sounder on individual passes of the Mars Reconnaissance Orbiter have revealed the internal structure of the Martian polar caps and provided new insights into the formation of the icy layers within and their relationship to climate. However, a complete picture of the cap interiors has been hampered by interfering reflections from off-nadir surface features and signal losses associated with sloping structures and scattering. Foss et al. (The Leading Edge 36, 43-57, 2017, https://doi.org/10.1190/tle36010043.1) addressed these limitations by assembling three-dimensional data volumes of SHARAD observations from thousands of orbital passes over each polar region and applying geometric corrections simultaneously. The radar volumes provide unprecedented views of subsurface features, readily imaging structures previously inferred from time-intensive manual analysis of single-orbit data (e.g., trough-bounding surfaces, a buried chasma, and a basal unit in the north, massive carbon-dioxide ice deposits and discontinuous layered sequences in the south). Our new mapping of the carbon-dioxide deposits yields a volume of 16,500 km3, 11% larger than the prior estimate. In addition, the radar volumes newly reveal other structures, including what appear to be buried impact craters with no surface expression. Our first assessment of 21 apparent craters at the base of the north polar layered deposits suggests a Hesperian age for the substrate, consistent with that of the surrounding plains as determined from statistics of surface cratering rates. Planned mapping of similar features throughout both polar volumes may provide new constraints on the age of the icy layered deposits. The radar volumes also provide new topographic data between the highest latitudes observed by the Mars Orbiter Laser Altimeter and those observed by SHARAD. In general, mapping of features in these radar volumes is placing new constraints on the nature and evolution of the polar deposits and associated climate changes.

Remote Sensing Observations of Thunderstorm Features in Latvia

NASA Astrophysics Data System (ADS)

Avotniece, Zanita; Briede, Agrita; Klavins, Maris; Aniskevich, Svetlana

2017-12-01

Thunderstorms are the most hazardous meteorological phenomena in Latvia in the summer season, and the assessment of their characteristics is essential for the development of an effective national climate and weather prediction service. However, the complex nature of convective processes sets specific limitations to their observation, analysis and forecasting. Therefore, the aim of this study is to analyse thunderstorm features associated with severe thunderstorms observed in weather radar and satellite data in Latvia over the period 2006-2015. The obtained results confirm the applicability of the selected thunderstorm features for thunderstorm nowcasting and analysis in Latvia. The most frequent features observed on days with thunderstorm were maximum radar reflectivities exceeding 50 dBZ and the occurrence of overshooting tops and tilted updrafts, while the occurrence of gravity waves, V-shaped storm structures and small ice particles have been found to be useful indicators of increased thunderstorm severity potential.

a Clustering-Based Approach for Evaluation of EO Image Indexing

NASA Astrophysics Data System (ADS)

Bahmanyar, R.; Rigoll, G.; Datcu, M.

2013-09-01

The volume of Earth Observation data is increasing immensely in order of several Terabytes a day. Therefore, to explore and investigate the content of this huge amount of data, developing more sophisticated Content-Based Information Retrieval (CBIR) systems are highly demanded. These systems should be able to not only discover unknown structures behind the data, but also provide relevant results to the users' queries. Since in any retrieval system the images are processed based on a discrete set of their features (i.e., feature descriptors), study and assessment of the structure of feature space, build by different feature descriptors, is of high importance. In this paper, we introduce a clustering-based approach to study the content of image collections. In our approach, we claim that using both internal and external evaluation of clusters for different feature descriptors, helps to understand the structure of feature space. Moreover, the semantic understanding of users about the images also can be assessed. To validate the performance of our approach, we used an annotated Synthetic Aperture Radar (SAR) image collection. Quantitative results besides the visualization of feature space demonstrate the applicability of our approach.

Electron and ion distribution functions in magnetopause reconnection

NASA Astrophysics Data System (ADS)

Wang, S.; Chen, L. J.; Bessho, N.; Hesse, M.; Kistler, L. M.; Torbert, R. B.; Mouikis, C.; Pollock, C. J.

2015-12-01

We investigate electron and ion velocity distribution functions in dayside magnetopause reconnection events observed by the Cluster and MMS spacecraft. The goal is to build a spatial map of electron and ion distribution features to enable the indication of the spacecraft location in the reconnection structure, and to understand plasma energization processes. Distribution functions, together with electromagnetic field structures, plasma densities, and bulk velocities, are organized and compared with particle-in-cell simulation results to indicate the proximities to the reconnection X-line. Anisotropic features in the distributions of magnetospheric- and magnetosheath- origin electrons at different locations in the reconnection inflow and exhaust are identified. In particular, parallel electron heating is observed in both the magnetosheath and magnetosphere inflow regions. Possible effects of the guide field strength, waves, and upstream density and temperature asymmetries on the distribution features will be discussed.

A Search for Structure in PAH Emission in Extended Sources at 3.3 and 3.4 Microns

NASA Technical Reports Server (NTRS)

Bregman, Jesse; Temi, P.; Rank, D. M.; Sloan, G. C.; Schultz, A. S. B.; Witteborn, Fred C. (Technical Monitor)

1994-01-01

We have observed three extended sources of the infrared emission features associated with polycyclic aromatic hydrocarbons (PAHs), using a 128x128 InSb array mounted on the 1.5 m NASA/Steward telescope on Mt. Lemmon. We used a CVF (1.5% bandpass) to isolate the emission from the 3.29 and 3.40 microns PAH features in NGC 1333 #3, Sharpless 106, and the Orion Bar. In all three sources, the 3.29 and 3.40 microns emission features arise from the same regions, but show decidedly different structure. We are analyzing the images to determine the relationship of the 3.40 microns feature to the main feature at 3.29 microns. The 3.40 microns feature may be a vibrational overtone of the 3.29 microns feature, or it may arise from attached molecular sidegroups.

The magnetopause at 5.2 R/E/ on August 4, 1972 - Magnetopause shape and structure

NASA Technical Reports Server (NTRS)

Kaufmann, R. L.; Cahill, L. J., Jr.

1977-01-01

The relatively large magnitude magnetopause field observed in several crossings associated with the ATS 5 and Explorer 45 satellites on August 4, 1972, is used to examine the structure of the magnetopause. The discussion covers magnetopause normals and their intepretation with respect to the shape of the magnetopause and to waves propagating in the magnetopause; magnetopause structure in terms of the field changes observed during magnetopause passages and of the associated magnetopause electric currents interred from the observations; and comparison of the observations with theoretical properties of open and close magnetopause models. Features necessary for comparison of magnetometer observations with pertinent theories are highlighted.

Saturn's dynamic D ring

USGS Publications Warehouse

Hedman, M.M.; Burns, J.A.; Showalter, M.R.; Porco, C.C.; Nicholson, P.D.; Bosh, A.S.; Tiscareno, M.S.; Brown, R.H.; Buratti, B.J.; Baines, K.H.; Clark, R.

2007-01-01

The Cassini spacecraft has provided the first clear images of the D ring since the Voyager missions. These observations show that the structure of the D ring has undergone significant changes over the last 25 years. The brightest of the three ringlets seen in the Voyager images (named D72), has transformed from a narrow, <40-km wide ringlet to a much broader and more diffuse 250-km wide feature. In addition, its center of light has shifted inwards by over 200 km relative to other features in the D ring. Cassini also finds that the locations of other narrow features in the D ring and the structure of the diffuse material in the D ring differ from those measured by Voyager. Furthermore, Cassini has detected additional ringlets and structures in the D ring that were not observed by Voyager. These include a sheet of material just interior to the inner edge of the C ring that is only observable at phase angles below about 60??. New photometric and spectroscopic data from the ISS (Imaging Science Subsystem) and VIMS (Visual and Infrared Mapping Spectrometer) instruments onboard Cassini show the D ring contains a variety of different particle populations with typical particle sizes ranging from 1 to 100 microns. High-resolution images reveal fine-scale structures in the D ring that appear to be variable in time and/or longitude. Particularly interesting is a remarkably regular, periodic structure with a wavelength of ??? 30 ?? km extending between orbital radii of 73,200 and 74,000 km. A similar structure was previously observed in 1995 during the occultation of the star GSC5249-01240, at which time it had a wavelength of ??? 60 ?? km. We interpret this structure as a periodic vertical corrugation in the D ring produced by differential nodal regression of an initially inclined ring. We speculate that this structure may have formed in response to an impact with a comet or meteoroid in early 1984. ?? 2006 Elsevier Inc. All rights reserved.

Mapping accuracy via spectrally and structurally based filtering techniques: comparisons through visual observations

NASA Astrophysics Data System (ADS)

Chockalingam, Letchumanan

2005-01-01

The data of Gunung Ledang region of Malaysia acquired through LANDSAT are considered to map certain hydrogeolocial features. To map these significant features, image-processing tools such as contrast enhancement, edge detection techniques are employed. The advantages of these techniques over the other methods are evaluated from the point of their validity in properly isolating features of hydrogeolocial interest are discussed. As these techniques take the advantage of spectral aspects of the images, these techniques have several limitations to meet the objectives. To discuss these limitations, a morphological transformation, which generally considers the structural aspects rather than spectral aspects from the image, are applied to provide comparisons between the results derived from spectral based and the structural based filtering techniques.

OBSERVATIONS AND MAGNETIC FIELD MODELING OF A SOLAR POLAR CROWN PROMINENCE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Su Yingna; Van Ballegooijen, Adriaan, E-mail: ynsu@head.cfa.harvard.edu

2012-10-01

We present observations and magnetic field modeling of the large polar crown prominence that erupted on 2010 December 6. Combination of Solar Dynamics Observatory (SDO)/Atmospheric Imaging Assembly (AIA) and STEREO{sub B}ehind/EUVI allows us to see the fine structures of this prominence both at the limb and on the disk. We focus on the structures and dynamics of this prominence before the eruption. This prominence contains two parts: an active region part containing mainly horizontal threads and a quiet-Sun part containing mainly vertical threads. On the northern side of the prominence channel, both AIA and EUVI observe bright features which appearmore » to be the lower legs of loops that go above then join in the filament. Filament materials are observed to frequently eject horizontally from the active region part to the quiet-Sun part. This ejection results in the formation of a dense-column structure (concentration of dark vertical threads) near the border between the active region and the quiet Sun. Using the flux rope insertion method, we create nonlinear force-free field models based on SDO/Helioseismic and Magnetic Imager line-of-sight magnetograms. A key feature of these models is that the flux rope has connections with the surroundings photosphere, so its axial flux varies along the filament path. The height and location of the dips of field lines in our models roughly replicate those of the observed prominence. Comparison between model and observations suggests that the bright features on the northern side of the channel are the lower legs of the field lines that turn into the flux rope. We suggest that plasma may be injected into the prominence along these field lines. Although the models fit the observations quiet well, there are also some interesting differences. For example, the models do not reproduce the observed vertical threads and cannot explain the formation of the dense-column structure.« less

Multi-disciplinary team meetings in stroke rehabilitation: an observation study and conceptual framework.

PubMed

Tyson, S F; Burton, L; McGovern, A

2014-12-01

To explore how multi-disciplinary team meetings operate in stroke rehabilitation. Non-participant observation of multi-disciplinary team meetings and semi-structured interviews with attending staff. Twelve meetings were observed (at least one at each site) and 18 staff (one psychologist, one social worker; four nurses; four physiotherapists four occupational therapists, two speech and language therapists, one stroke co-ordinator and one stroke ward manager) were interviewed in eight in-patient stroke rehabilitation units. Multi-disciplinary team meetings in stroke rehabilitation were complex, demanding and highly varied. A model emerged which identified the main inputs to influence conduct of the meetings were personal contributions of the members and structure and format of the meetings. These were mediated by the team climate and leadership skills of the chair. The desired outputs; clinical decisions and the attributes of apparently effective meetings were identified by the staff. A notable difference between the meetings that staff considered effective and those that were not, was their structure and format. Successful meetings tended to feature a set agenda, structured documentation; formal use of measurement tools; pre-meeting preparation and skilled chairing. These features were often absent in meetings perceived to be ineffective. The main features of operation of multi-disciplinary team meetings have been identified which will enable assessment tools and interventions to improve effectiveness to be developed. © The Author(s) 2014.

Structure Of The Core Of The Southern Vortex On Venus: VMC And VIRTIS Observations From Venus Express

NASA Astrophysics Data System (ADS)

Limaye, Sanjay; Baines, K. H.; Markiewicz, W.; Piccione, G.; Titov, D.; VMC Team; VIRTIS Team

2007-10-01

In April 2007, a special observational campaign was conducted from Venus Express using the high data rate transmissions available through a NASA DSN to obtain a movie of the South pole region of Venus. Previously, the VIRTIS observations showed a remarkable view of the hemispheric vortex centered roughly over the South pole with a well defined "S” shape structure within the core region. Concurrent ultraviolet (cloud top) and near infrared observations ( 50 km level) available from Venus Express enable us to examine the vertical structure in greater detail than possible before. Tracking of cloud features in the ultraviolet and near infrared data have been used to determine the horizontal flow at two levels. These results suggest that the horizontal (still dominantly zonal) flow in polar regions does not have large meridional shear. The morphology of the features seen in ultraviolet and near infrared data suggests that the core region does not rotate as a rigid cylinder, but exhibits twisting in the vertical. These observations provide us an insight into the structure of the global vortex circulation in the atmosphere of Venus, first detected in 1974 from Mariner 10 images. This research was supported by NASA Grant NNG06GC68G.

Molecular Beam Epitaxial Growth of GaAs on (631) Oriented Substrates

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cruz Hernandez, Esteban; Rojas Ramirez, Juan-Salvador; Contreras Hernandez, Rocio

2007-02-09

In this work, we report the study of the homoepitaxial growth of GaAs on (631) oriented substrates by molecular beam epitaxy (MBE). We observed the spontaneous formation of a high density of large scale features on the surface. The hilly like features are elongated towards the [-5, 9, 3] direction. We show the dependence of these structures with the growth conditions and we present the possibility of to create quantum wires structures on this surface.

Application of PALSAR-2 Remote Sensing Data for Landslide Hazard Mapping in Kelantan River Basin, Peninsular Malaysia

NASA Astrophysics Data System (ADS)

Beiranvand Pour, Amin; Hashim, Mazlan

2016-06-01

Yearly, several landslides ensued during heavy monsoons rainfall in Kelantan river basin, peninsular Malaysia, which are obviously connected to geological structures and topographical features of the region. In this study, the recently launched Phased Array type L-band Synthetic Aperture Radar-2 (PALSAR-2) onboard the Advanced Land Observing Satellite-2 (ALOS-2), remote sensing data were used to map geological structural and topographical features in the Kelantan river basin for identification of high potential risk and susceptible zones for landslides. Adaptive Local Sigma filter was selected and applied to accomplish speckle reduction and preserving both edges and features in PALSAR-2 fine mode observation images. Different polarization images were integrated to enhance geological structures. Additionally, directional filters were applied to the PALSAR-2 Local Sigma resultant image for edge enhancement and detailed identification of linear features. Several faults, drainage patterns and lithological contact layers were identified at regional scale. In order to assess the results, fieldwork and GPS survey were conducted in the landslide affected zones in the Kelantan river basin. Results demonstrate the most of the landslides were associated with N-S, NNW-SSE and NE-SW trending faults, angulated drainage pattern and metamorphic and Quaternary units. Consequently, structural and topographical geology maps were produced for Kelantan river basin using PALSAR-2 data, which could be broadly applicable for landslide hazard mapping.

Contribution of low-temperature single-molecule techniques to structural issues of pigment–protein complexes from photosynthetic purple bacteria

PubMed Central

Löhner, Alexander; Cogdell, Richard

2018-01-01

As the electronic energies of the chromophores in a pigment–protein complex are imposed by the geometrical structure of the protein, this allows the spectral information obtained to be compared with predictions derived from structural models. Thereby, the single-molecule approach is particularly suited for the elucidation of specific, distinctive spectral features that are key for a particular model structure, and that would not be observable in ensemble-averaged spectra due to the heterogeneity of the biological objects. In this concise review, we illustrate with the example of the light-harvesting complexes from photosynthetic purple bacteria how results from low-temperature single-molecule spectroscopy can be used to discriminate between different structural models. Thereby the low-temperature approach provides two advantages: (i) owing to the negligible photobleaching, very long observation times become possible, and more importantly, (ii) at cryogenic temperatures, vibrational degrees of freedom are frozen out, leading to sharper spectral features and in turn to better resolved spectra. PMID:29321265

Hyperfine structure of excited states and quadrupole moment of Ne-21 using laser-induced line-narrowing techniques.

NASA Technical Reports Server (NTRS)

Ducas, T. W.; Feld, M. S.; Ryan, L. W., Jr.; Skribanowitz, N.; Javan, A.

1972-01-01

Observation results are presented on the optical hyperfine structure in Ne-21 obtained with the aid of laser-induced line-narrowing techniques. The output from a long stabilized single-mode 1.15-micron He-Ne laser focused into an external sample cell containing Ne-21 was used in implementing these techniques. Their applicability is demonstrated for optical hyperfine structure observation in systems whose features are ordinarily masked by Doppler broadening.

An international standard for observation data

NASA Astrophysics Data System (ADS)

Cox, Simon

2010-05-01

A generic information model for observations and related features supports data exchange both within and between different scientific and technical communities. Observations and Measurements (O&M) formalizes a neutral terminology for observation data and metadata. It was based on a model developed for medical observations, and draws on experience from geology and mineral exploration, in-situ monitoring, remote sensing, intelligence, biodiversity studies, ocean observations and climate simulations. Hundreds of current deployments of Sensor Observation Services (SOS), covering multiple disciplines, provide validation of the O&M model. A W3C Incubator group on 'Semantic Sensor Networks' is now using O&M as one of the bases for development of a formal ontology for sensor networks. O&M defines the information describing observation acts and their results, including the following key terms: observation, result, observed-property, feature-of-interest, procedure, phenomenon-time, and result-time. The model separates of the (meta-)data associated with the observation procedure, the observed feature, and the observation event itself. Observation results may take various forms, including scalar quantities, categories, vectors, grids, or any data structure required to represent the value of some property of some observed feature. O&M follows the ISO/TC 211 General Feature Model so non-geometric properties must be associated with typed feature instances. This requires formalization of information that may be trivial when working within some earth-science sub-disciplines (e.g. temperature, pressure etc. are associated with the atmosphere or ocean, and not just a location) but is critical to cross-disciplinary applications. It also allows the same structure and terminology to be used for in-situ, ex-situ and remote sensing observations, as well as for simulations. For example: a stream level observation is an in-situ monitoring application where the feature-of-interest is a reach, the observed property is water-level, and the result is a time-series of heights; stream quality is usually determined by ex-situ observation where the feature-of-interest is a specimen that is recovered from the stream, the observed property is water-quality, and the result is a set of measures of various parameters, or an assessment derived from these; on the other hand, distribution of surface temperature of a water body is typically determined through remote-sensing, where at observation time the procedure is located distant from the feature-of-interest, and the result is an image or grid. Observations usually involve sampling of an ultimate feature-of-interest. In the environmental sciences common sampling strategies are used. Spatial sampling is classified primarily by topological dimension (point, curve, surface, volume) and is supported by standard processing and visualisation tools. Specimens are used for ex-situ processing in most disciplines. Sampling features are often part of complexes (e.g. specimens are sub-divided; specimens are retrieved from points along a transect; sections are taken across tracts), so relationships between instances must be recorded. And observational campaigns involve collections of sampling features. The sampling feature model is a core part of O&M, and application experience has shown that describing the relationships between sampling features and observations is generally critical to successful use of the model. O&M was developed through Open Geospatial Consortium (OGC) as part of the Sensor Web Enablement (SWE) initiative. Other SWE standards include SensorML, SOS, Sensor Planning Service (SPS). The OGC O&M standard (Version 1) had two parts: part 1 describes observation events, and part 2 provides a schema sampling features. A revised version of O&M (Version 2) is to be published in a single document as ISO 19156. O&M Version 1 included an XML encoding for data exchange, which is used as the payload for SOS responses. The new version will provide a UML model only. Since an XML encoding may be generated following a rule, such as that presented in ISO 19136 (GML 3.2), it is not included in the standard directly. O&M Version 2 thus supports multiple physical implementations and versions.

Spatial path models with multiple indicators and multiple causes: mental health in US counties.

PubMed

Congdon, Peter

2011-06-01

This paper considers a structural model for the impact on area mental health outcomes (poor mental health, suicide) of spatially structured latent constructs: deprivation, social capital, social fragmentation and rurality. These constructs are measured by multiple observed effect indicators, with the constructs allowed to be correlated both between and within areas. However, in the scheme developed here, particular latent constructs may also be influenced by known variables, or, via path sequences, by other constructs, possibly nonlinearly. For example, area social capital may be measured by effect indicators (e.g. associational density, charitable activity), but influenced as causes by other constructs (e.g. area deprivation), and by observed features of the socio-ethnic structure of areas. A model incorporating these features is applied to suicide mortality and the prevalence of poor mental health in 3141 US counties, which are related to the latent spatial constructs and to observed variables (e.g. county ethnic mix). Copyright © 2011 Elsevier Ltd. All rights reserved.

Constraints on inflation with LSS surveys: features in the primordial power spectrum

NASA Astrophysics Data System (ADS)

Palma, Gonzalo A.; Sapone, Domenico; Sypsas, Spyros

2018-06-01

We analyse the efficiency of future large scale structure surveys to unveil the presence of scale dependent features in the primordial spectrum—resulting from cosmic inflation—imprinted in the distribution of galaxies. Features may appear as a consequence of non-trivial dynamics during cosmic inflation, in which one or more background quantities experienced small but rapid deviations from their characteristic slow-roll evolution. We consider two families of features: localised features and oscillatory extended features. To characterise them we employ various possible templates parametrising their scale dependence and provide forecasts on the constraints on these parametrisations for LSST like surveys. We perform a Fisher matrix analysis for three observables: cosmic microwave background (CMB), galaxy clustering and weak lensing. We find that the combined data set of these observables will be able to limit the presence of features down to levels that are more restrictive than current constraints coming from CMB observations only. In particular, we address the possibility of gaining information on currently known deviations from scale invariance inferred from CMB data, such as the feature appearing at the l ~ 20 multipole (which is the main contribution to the low-l deficit) and another one around l ~ 800.

Simple ray tracing of Galileo-observed hectometric attenuation features

NASA Astrophysics Data System (ADS)

Higgins, Charles A.; Thieman, James R.; Fung, Shing F.; Green, James L.; Candey, Robert M.

Observations of persistent structural features within Jovian hectometric (HOM) radio emission have been made with the Galileo spacecraft. Two well-defined sinusoidal-shaped ``band'' features of reduced emission intensity and occurrence probability exist at all Jovian longitudes and nearly cover the entire spectrum of HOM radio emission from ~500 kHz to 3000 kHz. These two sinusoidal lanes have a bandwidth of 200-400 kHz and are 180° out of phase with one another, suggesting that they are a result of HOM radio emission propagation processes from opposite hemispheres. These features become more apparent when presented as intensity or occurrence probability spectrograms added together over multiple Jovian rotations. Enhancements in the HOM intensity and occurrence are seen along the edges of one of the observed sinusoidal lane features which may indicate caustic surfaces due to refraction along the propagation path. We present some simple ray tracing analyses to show that refraction from density enhancements in the Io torus flux tube may explain some of the observations. Using this simple method, we approximate the density enhancements in the Io flux tube to be 100 cm-3.

Warm Core Structure and Mid-Level Intrusion in Hurricane Bonnie (1998) During Landfalling on 26 August 1998

NASA Technical Reports Server (NTRS)

Heymsfield, G. M.; Halverson, J.

2004-01-01

On 26 August 1998 during CAMEX-3, Hurricane Bonnie was overflown by the NASA ER-2 aircraft instrumented with the EDOP X-Band radar and other instrumentation. Bonnie was an asymmetric storm on this day with several prominent features during its brush with the East coast. One of these features was strong intrusion of dry air on the west side of the storm. During the interaction of this westerly shear with the storm, the precipitation band rotates cyclonically from northwest to the south of the storm center. In this paper, we examine the structure of this dry intrusion and its effect on the storm. The EDOP observations are analyzed along with dropsondes, flight-level observations (NASA DC-8 and NOAA P3), and satellite data. The most apparent feature of the EDOP observations are the strong shears in the interface between the western eyewall updraft, and the dry intrusion. Mammatus are formed along this interface reminiscent of convective rear inflows, and suggestive of intense drying of the air through subsidence. This observation as well as other aspects of the analysis are related to recent numerical simulations of Hurricane Bonnie.

Observations, theoretical ideas and modeling of turbulent flows: Past, present and future

NASA Technical Reports Server (NTRS)

Chapman, G. T.; Tobak, M.

1985-01-01

Turbulence was analyzed in a historical context featuring the interactions between observations, theoretical ideas, and modeling within three successive movements. These are identified as predominantly statistical, structural and deterministic. The statistical movement is criticized for its failure to deal with the structural elements observed in turbulent flows. The structural movement is criticized for its failure to embody observed structural elements within a formal theory. The deterministic movement is described as having the potential of overcoming these deficiencies by allowing structural elements to exhibit chaotic behavior that is nevertheless embodied within a theory. Four major ideas of this movement are described: bifurcation theory, strange attractors, fractals, and the renormalization group. A framework for the future study of turbulent flows is proposed, based on the premises of the deterministic movement.

New features in Saturn's atmosphere revealed by high-resolution thermal infrared images

NASA Technical Reports Server (NTRS)

Gezari, D. Y.; Mumma, M. J.; Espenak, F.; Deming, D.; Bjoraker, G.; Woods, L.; Folz, W.

1989-01-01

Observations of the stratospheric IR emission structure on Saturn are presented. The high-spatial-resolution global images show a variety of new features, including a narrow equatorial belt of enhanced emission at 7.8 micron, a prominent symmetrical north polar hotspot at all three wavelengths, and a midlatitude structure which is asymmetrically brightened at the east limb. The results confirm the polar brightening and reversal in position predicted by recent models for seasonal thermal variations of Saturn's stratosphere.

Imaging the Buried Chicxulub Crater with Gravity Gradients and Cenotes

NASA Astrophysics Data System (ADS)

Hildebrand, A. R.; Pilkington, M.; Halpenny, J. F.; Ortiz-Aleman, C.; Chavez, R. E.; Urrutia-Fucugauchi, J.; Connors, M.; Graniel-Castro, E.; Camara-Zi, A.; Vasquez, J.

1995-09-01

Differing interpretations of the Bouguer gravity anomaly over the Chicxulub crater, Yucatan Peninsula, Mexico, have yielded diameter estimates of 170 to 320 km. Knowing the crater's size is necessary to quantify the lethal perturbations to the Cretaceous environment associated with its formation. The crater's size (and internal structure) is revealed by the horizontal gradient of the Bouguer gravity anomaly over the structure, and by mapping the karst features of the Yucatan region. To improve our resolution of the crater's gravity signature we collected additional gravity measurements primarily along radial profiles, but also to fill in previously unsurveyed areas. Horizontal gradient analysis of Bouguer gravity data objectively highlights the lateral density contrasts of the impact lithologies and suppresses regional anomalies which may obscure the gravity signature of the Chicxulub crater lithologies. This gradient technique yields a striking circular structure with at least 6 concentric gradient features between 25 and 85 km radius. These features are most distinct in the southwest probably because of denser sampling of the gravity field. Our detailed profiles detected an additional feature and steeper gradients (up to 5 mGal/km) than the original survey. We interpret the outer four gradient maxima to represent concentric faults in the crater's zone of slumping as is also revealed by seismic reflection data. The inner two probably represent the margin of the central uplift and the peak ring and or collapsed transient cavity. Radial gradients in the SW quadrant over the inferred ~40 km-diameter central uplift (4) may represent structural "puckering" as revealed at eroded terrestrial craters. Gradient features related to regional gravity highs and lows are visible outside the crater, but no concentric gradient features are apparent at distances > 90 km radius. The marginal gradient features may be modelled by slump faults as observed in large complex craters on the other terrestrial planets. A modeled fault of 1.5 km displacement (slightly slumped block exterior and impact breccia interior) reproduces the steepest gradient feature. This model is incompatible with models that place these gradient features inside the collapsed transient cavity. Locations of the karst features of the northern Yucatan region were digitized from 1:50,000 topographic maps, which show most but not all the water-filled sinkholes (locally known as cenotes). A prominent ring of cenotes is visible over the crater that is spatially correlated to the outer steep gravity gradient feature. The mapped cenotes constitute an unbiased sampling of the region's karst surface features of >50 m diameter. The gradient maximum and the cenote ring both meander with amplitudes of up to 2 km. The wiggles in the gradient feature and the cenote distribution probably correspond to the "scalloping" observed at the headwall of terraces in large complex craters. A second partial cenote ring exterior to the southwest side of the main ring corresponds to a less-prominent gravity gradient feature. No concentric structure is observable in the distribution of karst features at radii >90 km. The cenote ring is bounded by the outer peripheral steep gradient feature and must be related to it; the slump faults must have been reactivated sufficiently to create fracturing in the overlying and much younger sediment. Long term subsidence, as found at other terrestrial craters is a possible mechanism for the reactivation. Such long term subsidence may be caused by differential compaction or thermal relaxation. Elevations acquired during gravity surveys show that the cenote ring also corresponds to a topographic low along some of its length that probably reflects preferential erosion.

Structural lineament and pattern analysis of Missouri, using LANDSAT imagery

NASA Technical Reports Server (NTRS)

Martin, J. A.; Kisvarsanyi, G. (Principal Investigator)

1977-01-01

The author has identified the following significant results. Major linear, circular, and arcuate traces were observed on LANDSAT imagery of Missouri. Lineaments plotted within the state boundaries range from 20 to nearly 500 km in length. Several extend into adjoining states. Lineaments plots indicate a distinct pattern and in general reflect structural features of the Precambrian basement of the platform. Coincidence of lineaments traced from the imagery and known structural features in Missouri is high, thus supporting a causative relation between them. The lineament pattern apparently reveals a fundamental style of the deformation of the intracontinental craton. Dozens of heretofore unknown linear features related to epirogenic movements and deformation of this segment of the continental crust were delineated. Lineaments and mineralization are interrelated in a geometrically classifiable pattern.

Structural and ultrastructural features of the agouti tongue (Dasyprocta aguti Linnaeus, 1766)

PubMed Central

Ciena, Adriano Polican; Bolina, Cristina de Sousa; de Almeida, Sonia Regina Yokomizo; Rici, Rose Eli Grassi; de Oliveira, Moacir Franco; da da Silva, Marcelo Cavenaghi Pereira; Miglino, Maria Angélica; Watanabe, Ii-sei

2013-01-01

The agouti (Dasyprocta aguti Linnaeus, 1766) is a wild rodent belonging to the family Dasyproctidae that is found throughout Brazil and feeds on fruits and seeds. The aim of the present study was to describe the following features of the tongue of agouti: its morphological structures, the three-dimensional characteristics of the lingual papillae surface, the connective tissue cores (CTCs) and the epithelial cell ultrastructure. Four types of papillae were observed on the dorsal surface of the tongue with a triangular shape: filiform, fungiform, foliate and vallate. Filiform papillae were distributed throughout the tongue surface, and removal of the epithelial surface revealed conical CTCs and multifilaments. Fungiform papillae were observed in the rostral and middle regions, whereas foliate papillae developed in pairs on the lateral margin of the caudal region. Removal of the epithelium in these regions revealed CTCs with parallel laminar conformation. Vallate papillae were arranged in a V-shape in the caudal region, and their CTCs ranged in shape from elongate to ovoid. The ultrastructural components of the dorsal epithelium were the basal, spinous, granular and keratinised layers. A broad area with cytoplasmic projections was identified in the interface region between the lamina propria and the basal layer. Flattened cells with intermediate filaments were observed in the transitional region between spinous and granular layers. The keratinised layer was composed of superimposed epithelial cells where desmosomes and cell-surface microridges were observed. These structural features, including the three-dimensional aspects of the lingual papillae, the CTCs and the epithelial ultrastructure, indicate that when compared with other animals, particularly other rodent species, the morphological features of the tongue of agouti are relatively well developed, especially regarding foliate and vallate papillae. PMID:23701183

Exploring the theoretical pathways through which asthma app features can promote adolescent self-management.

PubMed

Carpenter, Delesha M; Geryk, Lorie L; Sage, Adam; Arrindell, Courtney; Sleath, Betsy L

2016-12-01

Asthma apps often lack strong theoretical underpinnings. We describe how specific features of asthma apps influenced adolescents' self-observation, self-judgment, and self-reactions, which are key constructs of Self-Regulation Theory (SRT). Adolescents (ages 12-16) with persistent asthma (n = 20) used two asthma self-management apps over a 1-week period. During semi-structured interviews, participants identified their asthma goals and the app features that best promoted self-observation, self-judgment, and fostered positive self-reactions. Interviews were digitally recorded, transcribed verbatim, and analyzed thematically using MAXQDA. Adolescents' goals were to reduce the impact of asthma on their lives. Adolescents reported that self-check quizzes, reminders, and charting features increased their ability to self-observe and self-judge their asthma, which, in turn, helped them feel more confident they could manage their asthma independently and keep their asthma well-controlled. Asthma apps can positively influence adolescents' self-management behaviors via increased self-observation, self-judgment, and increased self-efficacy.

Robust Learning of High-dimensional Biological Networks with Bayesian Networks

NASA Astrophysics Data System (ADS)

Nägele, Andreas; Dejori, Mathäus; Stetter, Martin

Structure learning of Bayesian networks applied to gene expression data has become a potentially useful method to estimate interactions between genes. However, the NP-hardness of Bayesian network structure learning renders the reconstruction of the full genetic network with thousands of genes unfeasible. Consequently, the maximal network size is usually restricted dramatically to a small set of genes (corresponding with variables in the Bayesian network). Although this feature reduction step makes structure learning computationally tractable, on the downside, the learned structure might be adversely affected due to the introduction of missing genes. Additionally, gene expression data are usually very sparse with respect to the number of samples, i.e., the number of genes is much greater than the number of different observations. Given these problems, learning robust network features from microarray data is a challenging task. This chapter presents several approaches tackling the robustness issue in order to obtain a more reliable estimation of learned network features.

Our Place in the Spongy Universe

ERIC Educational Resources Information Center

Bogner, Donna; Wentworth, Benning L.; Ristvey, John; Yanow, Gil; Wiens, Roger

2006-01-01

Physicist James Trefil once describes the universe as "The Spongy Universe," comparing large-scale cosmic structures to the structure of a sponge. The NASA Genesis education module "Cosmic Chemistry: Cosmogony" features the "Spongy Universe" activity in which pairs of students observe a household sponge, making…

Aromatic Structure in Simulates Titan Aerosol

NASA Technical Reports Server (NTRS)

Trainer, Melissa G.; Loeffler, M. J.; Anderson, C. M.; Hudson, R. L.; Samuelson, R. E.; Moore, M. A.

2011-01-01

Observations of Titan by the Cassini Composite Infrared Spectrometer (CIRS) between 560 and 20 per centimeter (approximately 18 to 500 micrometers) have been used to infer the vertical variations of Titan's ice abundances, as well as those of the aerosol from the surface to an altitude of 300 km [1]. The aerosol has a broad emission feature centered approximately at 140 per centimeter (71 micrometers). As seen in Figure 1, this feature cannot be reproduced using currently available optical constants from laboratory-generated Titan aerosol analogs [2]. The far-IR is uniquely qualified for investigating low-energy vibrational motions within the lattice structures of COITIDlex aerosol. The feature observed by CIRS is broad, and does not likely arise from individual molecules, but rather is representative of the skeletal movements of macromolecules. Since Cassini's arrival at Titan, benzene (C6H6) has been detected in the atmosphere at ppm levels as well as ions that may be polycyclic aromatic hydrocarbons (PAHs) [3]. We speculate that the feature may be a blended composite that can be identified with low-energy vibrations of two-dimensional lattice structures of large molecules, such as PAHs or nitrogenated aromatics. Such structures do not dominate the composition of analog materials generated from CH4 and N2 irradiation. We are performing studies forming aerosol analog via UV irradiation of aromatic precursors - specifically C6H6 - to understand how the unique chemical architecture of the products will influence the observable aerosol characteristics. The optical and chemical properties of the aromatic analog will be compared to those formed from CH4/N2 mixtures, with a focus on the as-yet unidentified far-IR absorbance feature. Preliminary results indicate that the photochemically-formed aromatic aerosol has distinct chemical composition, and may incorporate nitrogen either into the ring structure or adjoined chemical groups. These compositional differences are demonstrated in the aerosol mass spectra shown in Figure 2. The aromatic aerosol also demonstrates strong chemical reactivity when exposed to laboratory air, indicating substantial stored chemical potential. Oxidatoin and solubility studies wil be presented and implicatoins for prebiotic chemistry o nTitan will be discussed.

Automatic feature learning using multichannel ROI based on deep structured algorithms for computerized lung cancer diagnosis.

PubMed

Sun, Wenqing; Zheng, Bin; Qian, Wei

2017-10-01

This study aimed to analyze the ability of extracting automatically generated features using deep structured algorithms in lung nodule CT image diagnosis, and compare its performance with traditional computer aided diagnosis (CADx) systems using hand-crafted features. All of the 1018 cases were acquired from Lung Image Database Consortium (LIDC) public lung cancer database. The nodules were segmented according to four radiologists' markings, and 13,668 samples were generated by rotating every slice of nodule images. Three multichannel ROI based deep structured algorithms were designed and implemented in this study: convolutional neural network (CNN), deep belief network (DBN), and stacked denoising autoencoder (SDAE). For the comparison purpose, we also implemented a CADx system using hand-crafted features including density features, texture features and morphological features. The performance of every scheme was evaluated by using a 10-fold cross-validation method and an assessment index of the area under the receiver operating characteristic curve (AUC). The observed highest area under the curve (AUC) was 0.899±0.018 achieved by CNN, which was significantly higher than traditional CADx with the AUC=0.848±0.026. The results from DBN was also slightly higher than CADx, while SDAE was slightly lower. By visualizing the automatic generated features, we found some meaningful detectors like curvy stroke detectors from deep structured schemes. The study results showed the deep structured algorithms with automatically generated features can achieve desirable performance in lung nodule diagnosis. With well-tuned parameters and large enough dataset, the deep learning algorithms can have better performance than current popular CADx. We believe the deep learning algorithms with similar data preprocessing procedure can be used in other medical image analysis areas as well. Copyright © 2017. Published by Elsevier Ltd.

In silico quantitative structure-toxicity relationship study of aromatic nitro compounds.

PubMed

Pasha, Farhan Ahmad; Neaz, Mohammad Morshed; Cho, Seung Joo; Ansari, Mohiuddin; Mishra, Sunil Kumar; Tiwari, Sharvan

2009-05-01

Small molecules often have toxicities that are a function of molecular structural features. Minor variations in structural features can make large difference in such toxicity. Consequently, in silico techniques may be used to correlate such molecular toxicities with their structural features. Relative to nine different sets of aromatic nitro compounds having known observed toxicities against different targets, we developed ligand-based 2D quantitative structure-toxicity relationship models using 20 selected topological descriptors. The topological descriptors have several advantages such as conformational independency, facile and less time-consuming computation to yield good results. Multiple linear regression analysis was used to correlate variations of toxicity with molecular properties. The information index on molecular size, lopping centric index and Kier flexibility index were identified as fundamental descriptors for different kinds of toxicity, and further showed that molecular size, branching and molecular flexibility might be particularly important factors in quantitative structure-toxicity relationship analysis. This study revealed that topological descriptor-guided quantitative structure-toxicity relationship provided a very useful, cost and time-efficient, in silico tool for describing small-molecule toxicities.

Ultrastructural changes of goat corpus luteum during the estrous cycle.

PubMed

Jiang, Yi-Fan; Hsu, Meng-Chieh; Cheng, Chiung-Hsiang; Tsui, Kuan-Hao; Chiu, Chih-Hsien

2016-07-01

The present study was designed to study the ultrastructure of goat corpora lutea (CL, n=10) and structural changes as related to steroidogenic functions during the estrous cycle. The reproduction status of goats was estimated by analyzing serum progesterone concentrations. The CL at various stages was surgically collected. To characterize ultrastructural features associated with steroidogenesis, tissue and cellular structures were studied. Blood supplies were examined based on features of the endothelial cells and capillary structures in the CL. Activated endothelial cells and developing vessels were observed in the early stage, whereas mature endothelial cells, accumulating extracellular matrix fibers, and stabilized vessels were observed in the middle and late stages of assessment. In the late stage of assessment, shrunken goat luteal cells scattered around the capillaries were detected and formed circular regression areas. Features of autophagy and luteal cell apoptosis were noted. In large luteal cells, steroidogenic organelles were present, including microvillar channels, endoplasmic reticulum, and mitochondria. Conformational changes in the endoplasmic reticulum and increased mitochondria with tubular cristae were observed in the early-middle CL transitions. In contrast, mitochondria swelled and the cristae transformed to the lamellar type in the late stage, suggesting that organelle plasticity could contribute to steroidogenesis in goat CL. In conclusion, results suggest angiogenesis occurs in early developing CL and programmed cell death occurred in the late stage of CL assessment in the present study. Structures and quantiles of steroidogenic organelles are correlated with the steroidogenic functions in goats. Copyright © 2016 Elsevier B.V. All rights reserved.

Observation of Anderson localization in disordered nanophotonic structures

NASA Astrophysics Data System (ADS)

Sheinfux, Hanan Herzig; Lumer, Yaakov; Ankonina, Guy; Genack, Azriel Z.; Bartal, Guy; Segev, Mordechai

2017-06-01

Anderson localization is an interference effect crucial to the understanding of waves in disordered media. However, localization is expected to become negligible when the features of the disordered structure are much smaller than the wavelength. Here we experimentally demonstrate the localization of light in a disordered dielectric multilayer with an average layer thickness of 15 nanometers, deep into the subwavelength regime. We observe strong disorder-induced reflections that show that the interplay of localization and evanescence can lead to a substantial decrease in transmission, or the opposite feature of enhanced transmission. This deep-subwavelength Anderson localization exhibits extreme sensitivity: Varying the thickness of a single layer by 2 nanometers changes the reflection appreciably. This sensitivity, approaching the atomic scale, holds the promise of extreme subwavelength sensing.

Generic features of the primary relaxation in glass-forming materials (Review Article)

NASA Astrophysics Data System (ADS)

Kokshenev, Valery B.

2017-08-01

We discuss structural relaxation in molecular and polymeric supercooled liquids, metallic alloys and orientational glass crystals. The study stresses especially the relationships between observables raised from underlying constraints imposed on degrees of freedom of vitrification systems. A self-consistent parametrization of the α-timescale on macroscopic level results in the material-and-model independent universal equation, relating three fundamental temperatures, characteristic of the primary relaxation, that is numerically proven in all studied glass formers. During the primary relaxation, the corresponding small and large mesoscopic clusters modify their size and structure in a self-similar way, regardless of underlying microscopic realizations. We show that cluster-shape similarity, instead of cluster-size fictive divergence, gives rise to universal features observed in primary relaxation. In all glass formers with structural disorder, including orientational-glass materials (with the exception of plastic crystals), structural relaxation is shown to be driven by local random fields. Within the dynamic stochastic approach, the universal subdiffusive dynamics corresponds to random walks on small and large fractals.

Bone morphology of the hind limbs in two caviomorph rodents.

PubMed

de Araújo, F A P; Sesoko, N F; Rahal, S C; Teixeira, C R; Müller, T R; Machado, M R F

2013-04-01

In order to evaluate the hind limbs of caviomorph rodents a descriptive analysis of the Cuniculus paca (Linnaeus, 1766) and Hydrochoerus hydrochaeris (Linnaeus, 1766) was performed using anatomical specimens, radiography, computed tomography (CT) and full-coloured prototype models to generate bone anatomy data. The appendicular skeleton of the two largest rodents of Neotropical America was compared with the previously reported anatomical features of Rattus norvegicus (Berkenhout, 1769) and domestic Cavia porcellus (Linnaeus, 1758). The structures were analyzed macroscopically and particular findings of each species reported. Features including the presence of articular fibular projection and lunulae were observed in the stifle joint of all rodents. Imaging aided in anatomical description and, specifically in the identification of bone structures in Cuniculus paca and Hydrochoerus hydrochaeris. The imaging findings were correlated with the anatomical structures observed. The data may be used in future studies comparing these animals to other rodents and mammalian species. © 2012 Blackwell Verlag GmbH.

Does skull shape mediate the relationship between objective features and subjective impressions about the face?

PubMed

Marečková, Klára; Chakravarty, M Mallar; Huang, Mei; Lawrence, Claire; Leonard, Gabriel; Perron, Michel; Pike, Bruce G; Richer, Louis; Veillette, Suzanne; Pausova, Zdenka; Paus, Tomáš

2013-10-01

In our previous work, we described facial features associated with a successful recognition of the sex of the face (Marečková et al., 2011). These features were based on landmarks placed on the surface of faces reconstructed from magnetic resonance (MR) images; their position was therefore influenced by both soft tissue (fat and muscle) and bone structure of the skull. Here, we ask whether bone structure has dissociable influences on observers' identification of the sex of the face. To answer this question, we used a novel method of studying skull morphology using MR images and explored the relationship between skull features, facial features, and sex recognition in a large sample of adolescents (n=876; including 475 adolescents from our original report). To determine whether skull features mediate the relationship between facial features and identification accuracy, we performed mediation analysis using bootstrapping. In males, skull features mediated fully the relationship between facial features and sex judgments. In females, the skull mediated this relationship only after adjusting facial features for the amount of body fat (estimated with bioimpedance). While body fat had a very slight positive influence on correct sex judgments about male faces, there was a robust negative influence of body fat on the correct sex judgments about female faces. Overall, these results suggest that craniofacial bone structure is essential for correct sex judgments about a male face. In females, body fat influences negatively the accuracy of sex judgments, and craniofacial bone structure alone cannot explain the relationship between facial features and identification of a face as female. Copyright © 2013 Elsevier Inc. All rights reserved.

Diverse Electron and Ion Acceleration Characteristics Observed Over Jupiter's Main Aurora

NASA Astrophysics Data System (ADS)

Mauk, B. H.; Haggerty, D. K.; Paranicas, C.; Clark, G.; Kollmann, P.; Rymer, A. M.; Peachey, J. M.; Bolton, S. J.; Levin, S. M.; Adriani, A.; Allegrini, F.; Bagenal, F.; Bonfond, B.; Connerney, J. E. P.; Ebert, R. W.; Gladstone, G. R.; Kurth, W. S.; McComas, D. J.; Ranquist, D.; Valek, P.

2018-02-01

Two new Juno-observed particle features of Jupiter's main aurora demonstrate substantial diversity of processes generating Jupiter's mysterious auroral emissions. It was previously speculated that sometimes-observed potential-driven aurora (up to 400 kV) can turn into broadband stochastic acceleration (dominating at Jupiter) by means of instability. Here direct evidence for such a process is revealed with a "mono-energetic" electron inverted-V rising in energy to 200 keV, transforming into a region of broadband acceleration with downward energy fluxes tripling to 3,000 mW/m2, and then transforming back into a mono-energetic structure ramping down from 200 keV. But a second feature of interest observed nearby is unlikely to have operated in the same way. Here a downward accelerated proton inverted-V, with inferred potentials to 300-400 kV, occurred simultaneously with downward accelerated broadband electrons with downward energy fluxes as high as any observed ( 3,000 mW/m2). This latter feature has no known precedent with Earth auroral observations.

Precursor state of oxygen molecules on the Si(001) surface during the initial room-temperature adsorption

NASA Astrophysics Data System (ADS)

Hwang, Eunkyung; Chang, Yun Hee; Kim, Yong-Sung; Koo, Ja-Yong; Kim, Hanchul

2012-10-01

The initial adsorption of oxygen molecules on Si(001) is investigated at room temperature. The scanning tunneling microscopy images reveal a unique bright O2-induced feature. The very initial sticking coefficient of O2 below 0.04 Langmuir is measured to be ˜0.16. Upon thermal annealing at 250-600 °C, the bright O2-induced feature is destroyed, and the Si(001) surface is covered with dark depressions that seem to be oxidized structures with -Si-O-Si- bonds. This suggests that the observed bright O2-induced feature is an intermediate precursor state that may be either a silanone species or a molecular adsorption structure.

Analysis of Surface and Bulk Behavior in Ni-Pd Alloys

NASA Technical Reports Server (NTRS)

Bozzolo, Guillermo; Noebe, Rondald D.

2003-01-01

The most salient features of the surface structure and bulk behavior of Ni-Pd alloys have been studied using the BFS method for alloys. Large-scale atomistic simulations were performed to investigate surface segregation profiles as a function of temperature, crystal face, and composition. Pd enrichment of the first layer was observed in (111) and (100) surfaces, and enrichment of the top two layers occurred for (110) surfaces. In all cases, the segregation profile shows alternate planes enriched and depleted in Pd. In addition, the phase structure of bulk Ni-Pd alloys as a function of temperature and composition was studied. A weak ordering tendency was observed at low temperatures, which helps explain the compositional oscillations in the segregation profiles. Finally, based on atom-by-atom static energy calculations, a comprehensive explanation for the observed surface and bulk features will be presented in terms of competing chemical and strain energy effects.

Earth observations and photography experiment: Summary of significant results

NASA Technical Reports Server (NTRS)

El-Baz, F.

1978-01-01

Observation and photographic data from the Apollo Soyuz Test Project are analyzed. The discussion is structured according to the fields of investigation including: geology, desert studies, oceanography, hydrology, and meteorology. The data were obtained by: (1) visual observations of selected Earth features, (2) hand-held camera photography to document observations, and (3) stereo mapping photography of areas of significant scientific interest.

ASSOCIATIONS BETWEEN SMALL-SCALE STRUCTURE IN LOCAL GALACTIC NEUTRAL HYDROGEN AND IN THE COSMIC MICROWAVE BACKGROUND OBSERVED BY PLANCK

DOE Office of Scientific and Technical Information (OSTI.GOV)

Verschuur, Gerrit L., E-mail: gverschu@naic.edu

High-resolution galactic neutral hydrogen (HI) data obtained with the Green Bank Telescope (GBT) over 56 square degrees of sky around l = 132°, b = 25° are compared with small-scale structure in the Cosmic Microwave Background observed by PLANCK, specifically at 143 and 857 GHz, as well as with 100 μm observations from the IRIS survey. The analysis uses data in 13 2° × 2° sub-areas found in the IRSA database at IPAC. The results confirm what has been reported previously; nearby galactic HI features and high-frequency continuum sources believed to be cosmological are in fact clearly associated. While severalmore » attempts strongly suggest that the associations are statistically significant, the key to understanding the phenomenon lies in the fact that in any given area HI is associated with cirrus dust at certain HI velocities and with 143 GHz features at different velocities. At the same time, for the 13 sub-areas studied, there is very little overlap between the dust and 143 GHz features. The data do not imply that the HI itself gives rise to the high-frequency continuum emission. Rather, they appear to indicate undiagnosed brightness enhancements indirectly associated with the HI. If low density interstellar electrons concentrated into clumps, or observed in directions where their integrated line-of-sight column densities are greater than the background in a manner similar to the phenomena that give rise to structure in diffuse HI structure, they will profoundly affect attempts to create a foreground electron mask used for processing PLANCK as well as WMAP data.« less

Choosing the Right Solution Approach: The Crucial Role of Situational Knowledge in Electricity and Magnetism

ERIC Educational Resources Information Center

Savelsbergh, Elwin R.; de Jong, Ton; Ferguson-Hessler, Monica G. M.

2011-01-01

Novice problem solvers are rather sensitive to surface problem features, and they often resort to trial and error formula matching rather than identifying an appropriate solution approach. These observations have been interpreted to imply that novices structure their knowledge according to surface features rather than according to problem type…

Features and Historical Aspects of the Philippines Educational System

ERIC Educational Resources Information Center

Musa, Sajid; Ziatdinov, Rushan

2012-01-01

This article deals with the features of the Philippine educational system. Additionally, brief and concise information will be given on how the educational system came into existence, the organization and the structure of the system itself. This paper also tackles the obstacles and problems observed in the past and up to the present, and gives…

HST and ground-based observations of bright storms on Uranus during 2014-2015.

NASA Astrophysics Data System (ADS)

Sayanagi, K. M.; Sromovsky, L. A.; Fry, P. M.; De Pater, I.; Hammel, H. B.; Rages, K. A.; Baranec, C.; Delcroix, M.; Wesley, A.; Hueso, R.; Sanchez-Lavega, A.; Simon, A. A.; Wong, M. H.; Orton, G. S.; Irwin, P. G.

2015-12-01

We report the temporal evolution of bright, long-lived cloud features on Uranus. We observed and tracked the features between August 2014 and January 2015 with the Hubble Space Telescope, the Keck 2 10-m telescope, VLT, Gran Telescopio Canarias, Gemini, William Herschel Telescope, Robo-AO, Pic du Midi 1-m telescope, and multiple smaller telescopes operated by amateur astronomers. Surprisingly bright features were first revealed in the Keck adaptive-optics images in August; this initial set of observations motivated follow-up observations around the world. One of the storms (identified as "Feature F" in Sromovsky et al. 2015, and Feature 2 in de Pater et al. 2015), which was the deepest in that dataset, was bright enough that it was detected by multiple amateur observers, permitting us to trigger a Hubble Target of Opportunity (ToO) observation on October 14th, 2014. A complex of features at this latitude was also observed by Hubble as part of the Outer Planet Atmospheres Legacy (OPAL) program on November 8-9, 2014. We will present the temporal evolution of the cloud activities from August 2014 through January 2015, and analyze the vertical structure of the cloud features in the Hubble datasets. The Hubble images used in our study were collected with support of HST grants GO13712 to KMS and GO13937 to AAS. Sromovsky et al. 2015, "High S/N Keck and Gemini AO imaging of Uranus during 2012-2014: New cloud patterns, increasing activity, and improved wind measurements." Icarus 258, 192-223. de Pater et al. 2014, "Record-breaking storm activity on Uranus in 2014." Icarus 252, 121-128

Observations and Numerical Modeling of the Jovian Ribbon

NASA Technical Reports Server (NTRS)

Cosentino, R. G.; Simon, A.; Morales-Juberias, R.; Sayanagi, K. M.

2015-01-01

Multiple wavelength observations made by the Hubble Space Telescope in early 2007 show the presence of a wavy, high-contrast feature in Jupiter's atmosphere near 30 degrees North. The "Jovian Ribbon," best seen at 410 nanometers, irregularly undulates in latitude and is time-variable in appearance. A meridional intensity gradient algorithm was applied to the observations to track the Ribbon's contour. Spectral analysis of the contour revealed that the Ribbon's structure is a combination of several wavenumbers ranging from k equals 8-40. The Ribbon is a dynamic structure that has been observed to have spectral power for dominant wavenumbers which vary over a time period of one month. The presence of the Ribbon correlates with periods when the velocity of the westward jet at the same location is highest. We conducted numerical simulations to investigate the stability of westward jets of varying speed, vertical shear, and background static stability to different perturbations. A Ribbon-like morphology was best reproduced with a 35 per millisecond westward jet that decreases in amplitude for pressures greater than 700 hectopascals and a background static stability of N equals 0.005 per second perturbed by heat pulses constrained to latitudes south of 30 degrees North. Additionally, the simulated feature had wavenumbers that qualitatively matched observations and evolved throughout the simulation reproducing the Jovian Ribbon's dynamic structure.

Characterization of ultrafast laser-ablation plasma plumes at various Ar ambient pressures

DOE PAGES

Diwakar, P. K.; Harilal, S. S.; Phillips, M. C.; ...

2015-07-30

Expansion dynamics and internal plume structures of fs laser ablated brass plasma in Ar at various pressure levels ranging from vacuum to atmospheric were studied using multitude of diagnostic tools including time resolved and time integrated 2-dimensional imaging, optical time of flight measurements and visible emission spectroscopy. Temporal evolution of excited Cu and Zn species in the plume were imaged using band pass interference filters and compared its hydrodynamic expansion features with spectrally integrated images of the plume. 2D imaging coupled with monochromatic line selection showed several interesting features at various pressure levels which include velocity differences among the plumemore » species, emission intensity distribution, plasma temperature, electron density etc. Plume confinement, enhanced signal intensity, and dual peak structures in time-of-flight profiles were observed at intermediate pressure range of ~10 Torr. Optimum signal to background ratio was also observed in this pressure range. As a result, possible mechanisms for observed changes in plume shape, optical emission intensity and dual peak structures in time-of-flight profiles were discussed.« less

SU-E-J-264: Using Magnetic Resonance Imaging-Derived Features to Quantify Radiotherapy-Induced Normal Tissue Morbidity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thor, M; Tyagi, N; Deasy, J

2015-06-15

Purpose: The aim of this study was to explore the use of Magnetic Resonance Imaging (MRI)-derived features as indicators of Radiotherapy (RT)-induced normal tissue morbidity. We also investigate the relationship between these features and RT dose in four critical structures. Methods: We demonstrate our approach for four patients treated with RT for base of tongue cancer in 2005–2007. For each patient, two MRI scans (T1-weighted pre (T1pre) and post (T1post) gadolinium contrast-enhancement) were acquired within the first six months after RT. The assessed morbidity endpoint observed in 2/4 patients was Grade 2+ CTCAEv.3 trismus. Four ipsilateral masticatory-related structures (masseter, lateralmore » and medial pterygoid, and the temporal muscles) were delineated on both T1pre and T1post and these scans were co-registered to the treatment planning CT using a deformable demons algorithm. For each structure, the maximum and mean RT dose, and six MRI-derived features (the second order texture features entropy and homogeneity, and the first order mean, median, kurtosis, and skewness) were extracted and compared structure-wise between patients with and without trismus. All MRI-derived features were calculated as the difference between T1pre and T1post, ΔS. Results: For 5/6 features and all structures, ΔS diverged between trismus and non-trismus patients particularly for the masseter, lateral pterygoid, and temporal muscles using the kurtosis feature (−0.2 vs. 6.4 for lateral pterygoid). Both the maximum and mean RT dose in all four muscles were higher amongst the trismus patients (with the maximum dose being up to 25 Gy higher). Conclusion: Using MRI-derived features to quantify RT-induced normal tissue complications is feasible. We showed that several features are different between patients with and without morbidity and that the RT dose in all investigated structures are higher amongst patients with morbidity. MRI-derived features, therefore, has the potential to improve predictions of normal tissue morbidity.« less

Low-temperature and low atmospheric pressure infrared reflectance spectroscopy of Mars soil analog materials

NASA Technical Reports Server (NTRS)

Bishop, Janice L.; Pieters, Carle M.

1995-01-01

Infrared reflectance spectra of carefully selected Mars soil analog materials have been measured under low atmospheric pressures and temperatures. Chemically altered montmorillonites containing ferrihydrite and hydrated ferric sulfate complexes are examined, as well as synthetic ferrihydrate and a palagonitic soil from Haleakala, Maui. Reflectance spectra of these analog materials exhibit subtle visible to near-infrared features, which are indicative of nanophase ferric oxides or oxyhydroxides and are similar to features observed in the spectra of the bright regions of Mars. Infrared reflectance spectra of these analogs include hydration features due to structural OH, bound H2O and adsorbed H2O. The spectal character of these hydration features is highly dependent on the sample environment and on the nature of the H2O/OH in the analogs. The behavior of the hydration features near 1.9 micrometers, 2.2 micrometers, 2.7 micrometers, 3 micrometers, and 6 micrometers are reported here in spetra measured under Marslike atmospheric environment. In spectra of these analogs measured under dry Earth atmospheric conditions the 1.9-micrometer band depth is 8-17%; this band is much stonger under moist conditions. Under Marslike atmospheric conditions the 1.9-micrometer feature is broad and barely discernible (1-3% band depth) in spectra of the ferrihydrite and palagonitic soil samples. In comparable spectra of the ferric sulfate-bearing montmorillonite the 1.9-micrometer feature is also broad, but stronger (6% band depth). In the low atmospheric pressure and temperature spectra of the ferrihydrite-bearing montmorillonite this feature is sharper than the other analogs and relatively stronger (6% band depth). Although the intensity of the 3- micrometer band is weaker in spectra of each of the analogs when measured under Marslike conditions, the 3-micromter band remains a dominant feature and is especially broad in spectra of the ferrihydrite and palagonitic soil. The structural OH features observed in these materials at 2.2-2.3 micrometers and 2.27 micrometers remain largely unaffected by the environmental conditions. A shift in the Christiansen feature towards shorter wavelengths has also been observed with decreasing atmospheric pressure and temperature in the midinfrared spectra of these samples.

Low-temperature and low atmospheric pressure infrared reflectance spectroscopy of Mars soil analog materials

NASA Technical Reports Server (NTRS)

Bishop, Janice L.; Pieters, Carle M.

1995-01-01

Infrared reflectance spectra of carefully selected Mars soil analog materials have been measured under low atmospheric pressures and temperatures. Chemically altered montmorillonites containing ferrihydrite and hydrated ferric sulfate complexes are examined, as well as synthetic ferrihydrite and a palagonitic soil from Haleakala, Maui. Reflectance spectra of these analog materials exhibit subtle visible to near-infrared features, which are indicative of nanophase ferric oxides or oxyhydroxides and are similar to features observed in the spectra of the bright regions of Mars. Infrared reflectance spectra of these analogs include hydration features due to structural OH, bound H2O, and adsorbed H2O. The spectral character of these hydration features is highly dependent on the sample environment and on the nature of the H2O/OH in the analogs. The behavior of the hydration features near 1.9 micron, 2.2 micron, 2.7 micron, 3 micron, and 6 microns are reported here in spectra measured under a Marslike atmospheric environment. In spectra of these analogs measured under dry Earth atmospheric conditions the 1.9-micron band depth is 8-17%; this band is much stronger under moist conditions. Under Marslike atmospheric conditions the 1.9-micron feature is broad and barely discernible (1-3% band depth) in spectra of the ferrihydrite and palagonitic soil samples. In comparable spectra of the ferric sulfate-bearing montmorillonite the 1.9-micron feature is also broad, but stronger (6% band depth). In the low atmospheric pressure and temperature spectra of the ferrihydrite-bearing montmorillonite this feature is sharper than the other analogs and relatively stronger (6% band depth). Although the intensity of the 3-micron band is weaker in spectra of each of the analogs when measured under Marslike conditions, the 3-micron band remains a dominant feature and is especially broad in spectra of the ferrihydrite and palagonitic soil. The structural OH features observed in these materials at 2.2-2.3 micron and 2.75 microns remain largely unaffected by the environmental conditions. A shift in the Christiansen feature towards shorter wavelengths has also been observed with decreasing atmospheric pressure and temperature in the midinfrared spectra of these samples.

Control of large flexible space structures

NASA Technical Reports Server (NTRS)

Vandervelde, W. E.

1986-01-01

Progress in robust design of generalized parity relations, design of failure sensitive observers using the geometric system theory of Wonham, computational techniques for evaluation of the performance of control systems with fault tolerance and redundancy management features, and the design and evaluation od control systems for structures having nonlinear joints are described.

Passive microwave structure of severe tornadic storms on 16 November 1987

NASA Technical Reports Server (NTRS)

Heymsfield, Gerald M.; Fulton, Richard

1994-01-01

Passive microwave observations using the Special Sensor Microwave/Imager (SSM/I) are presented for severe tornadic storms in the lower midwestern United States on 16 November 1987. These measurements are compared with Geostationary Operational Environmental Satellite infrared (IR) measurements for the same case. The IR observations had a classic 'V' cold feature commonly associated with severe Midwest thunderstorms. The minimum microwave brightness temperatures at 86 GHz, which primarily respond to ice scattering by larger ice particles, were located in the convective region and the warm interior of the anvil top, between the arms of the IR V feature. The interior warm region was the only portion of the entire anvil region that had high 86-GHz polarization difference temperatures. Microphysical implications of these multispectral observations are discussed. The observations suggest that there are large variations of ice microphysical characteristics spatially and vertically in the anvil region. These observations are discussed in the context of previous dynamical and microphysical hypotheses on the IR V feature.

New Science in Plain Sight: Optical Manifestations of Coupled Subauroral Features Documented by Citizen Scientists

NASA Astrophysics Data System (ADS)

MacDonald, E.; Heavner, M.; Kosar, B.; Case, N.; Donovan, E.; Spanswick, E.; Nishimura, Y.; Gallardo-Lacourt, B.

2017-12-01

Aurora has been observed and recorded by people for thousands of years. Recently, citizen scientists captured features of aurora-like arc events not previously described in the literature at subauroral latitudes. Amateur photo sequences show unusual flow, unstable composition changes, and field aligned structures. Observations from the Swarm satellite crossing the arc reveals thermal enhancement, density depletion, and strong westward ion flow. These signatures resemble features previously described from in situ observation however the optical manifestation is surprising and contains rich, unstable signatures as well. The relevant observations have presented important implications on a variety of open questions, including the fundamental definition of aurora, and limitations of jargon and subfield distinctions. This paper covers the discovery, its context, and the significant implications for the application of public participation measurement modes to the natural sciences whereby they can form a disruptive gap to expose new observing perspectives. Photo Credit: Notanee Bourassa, Alberta Aurora Chasers

Laser-induced structure formation on stretched polymer foils

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bityurin, Nikita; Arnold, Nikita; Baeuerle, Dieter

2007-04-15

Noncoherent structures that develop during UV laser ablation of stretched semicrystalline polymer foils are a very general phenomenon. A thermodynamic model based on stress relaxation within the modified layer of the polymer surface describes the main features of the observed phenomena, and, in particular, the dependence of the period of structures on laser wavelength, fluence, and number of laser pulses.

Recognition of the geologic framework of porphyry deposits on ERTS-1 imagery

NASA Technical Reports Server (NTRS)

Wilson, J. C. (Principal Investigator)

1973-01-01

The author has identified the following significant results. Photointerpretation methods have been most successfully applied in the less vegetated test sites where several previously unknown geologic features have been recognized and known ones extended. Northwest mid-Tertiary faults in the ELY, Nevada area are observed to offset north-trending ranges and abruptly terminate older Mesozoic structures. In the Ray, Arizona area the observed patterns of fault and fracture systems appear to be related to the locations of known porphyry copper deposits. In the Tanacross, Alaska area a number of regional circular features observed may represent near surface intrusions and, therefore, permissive environments for copper porphyries.

Analysis of active volcanoes from the Earth Observing System

NASA Technical Reports Server (NTRS)

Mouginis-Mark, Peter; Rowland, Scott; Crisp, Joy; Glaze, Lori; Jones, Kenneth; Kahle, Anne; Pieri, David; Zebker, Howard; Krueger, Arlin; Walter, Lou

1991-01-01

The Earth Observing System (EOS) scheduled for launch in 1997 and 1999 is briefly described, and the EOS volcanology investigation objectives are discussed. The volcanology investigation will include long- and short-term monitoring of selected volcanoes, the detection of precursor activity associated with unanticipated eruptions, and a detailed study of on-going eruptions. A variety of instruments on the EOS platforms will enable the study of local- and regional-scale thermal and deformational features of volcanoes, and the chemical and structural features of volcanic eruption plumes and aerosols.

Super-Keplerian Motions in the AU Mic Circumstellar Debris System

NASA Astrophysics Data System (ADS)

Wisniewski, John

2017-08-01

We found enigmatic, few-au-scale features in spatially resolved near-IR scattered light observations of the AU Mic debris disk system obtained with VLT/SPHERE in 2014. We recovered these structures in re-analysis of HST/STIS imagery from 2010/2011, and discovered that they are moving away from the star at super-Keplerian speeds, possibly escaping the system. To-date, these are the only moving features seen in resolved imagery of debris disks. To help diagnose the origin of this phenomenon and in concert with multi-wavelength diagnostics being pursued with other facilities, we propose to use 12 orbits of HST/STIS to re-image the AU Mic scattered light disk from 0.2 (2 au) to 13 (130 au) 8 years after the previous epoch of HST/STIS imagery. HST/STIS provides the only means to trace the motion of structures that have already moved outside the FOV of ground-based extreme-AO imagers, the best means to accurately diagnose the morphological and kinematic evolution of these moving features, and the best means to trace the evolution of small grains in the system. Our optical STIS coronagraphy observations are critically needed to establish the locations and shapes of the blobs, establish their optical fluxes at high photometric fidelity, and therefore enable (IR - optical) colors of disk features to be measured in JWST's cycle-1, using NIRCAM's and MIRI's coronagraphs. These data will constrain the grain size distribution, hence mass, of the moving features and by extension the magnitude of the force that is expelling the features, enabling us to test whether mechanisms like the stellar wind or coronal-mass ejections are responsible for the newly observed phenomenon.

The Mechanics of Impact Basin Formation: Comparisons between Modeling and Geophysical Observations

NASA Astrophysics Data System (ADS)

Stewart, S. T.

2010-12-01

Impact basins are the largest geologic structures on planetary surfaces. Single or multiple ring-shaped scarps or arcuate chains of massifs typically surround basin-sized craters (e.g., larger than about 300 km diameter on the moon [1]). Impact basins also possess central mass anomalies related to ejection of a portion of the crust (and mantle) and uplift of the mantle. I will discuss insights into the mechanics of impact basin formation derived from numerical simulations and focus on features that may be compared with gravity and topography data. The simulations of basin formation use the method of [2] with an improved rheological model that includes dynamic weakening of faults and more accurate treatment of the mantle solidus. Two-dimensional simulations of vertical impacts onto spherical planets utilize a central gravity field, and three-dimensional simulations of oblique impacts include a self-gravity calculation. During the opening and collapse of the transient crater, localization of strain leads to deformation features that are interpreted as deep faults through the lithosphere. Based on simulations of mantle-excavating impacts onto the moon and Mars with thermal gradients that intersect the solidus in the asthenosphere, the final impact structure has three major features: (i) an inner basin filled with melt and bounded by the folded lithosphere, (ii) a broad shallow terrace of faulted and translated lithosphere with an ejecta deposit, and (iii) the surrounding autochthonous lithosphere with radially thinning ejecta. The folded lithosphere is a complex structure that experiences translation inward and then outward again during collapse of the transient cavity. The uplifted mantle within this structure is overlain by a thin layer of hot crustal material. In addition to asymmetry in the excavated material, 45-degree impact events produce an asymmetric terrace feature. The principal observations for comparison to the calculations are the inferred locations of major ring structures (derived from topography and geologic mapping) and the crustal thickness and mantle topography (derived from gravity and topography) [see also 3]. Preliminary comparisons indicate that the simulations produce the major features in the observations. I will present detailed comparisons between simulations and observations for major basins on the moon, including South Pole-Aitken, for different initial lithospheric thicknesses and thermal gradients. [1] Spudis, P.D. (1993) The Geology of Multi-Ring Impact basins: Cambridge University Press. [2] Senft, L.E. and S.T. Stewart (2009) Earth and Planetary Science Letters 287, 471-482. [3] Lillis, R.J., et al. (2010) AGU Fall Meeting.

SDO/AIA Observation of Kelvin-Helmholtz Instability in the Solar Corona

NASA Technical Reports Server (NTRS)

Ofman, L.; Thompson, B. J.

2011-01-01

We present observations of the formation, propagation and decay of vortex-shaped features in coronal images from the Solar Dynamics Observatory (SDO) associated with an eruption starting at about 2:30UT on Apr 8, 2010. The series of vortices formed along the interface between an erupting (dimming) region and the surrounding corona. They ranged in size from several to ten arcseconds, and traveled along the interface at 6-14 km s-1. The features were clearly visible in six out of the seven different EUV wavebands of the Atmospheric Imaging Assembly (AIA). Based on the structure, formation, propagation and decay of these features, we identified these features as the first observations of the Kelvin- Helmholtz (KH) instability in the corona in EUV. The interpretation is supported by linear analysis and by MHD model of KH instability. We conclude that the instability is driven by the velocity shear between the erupting and closed magnetic field of the Coronal Mass Ejection (CME).

Small-Scale Structure in Saturn's Rings

NASA Astrophysics Data System (ADS)

Rehnberg, Morgan

2017-08-01

The rings of Saturn are the largest and most complex in the Solar System. Decades of observation from ground- and space-based observatories and spacecraft missions have revealed the broad structure of the rings and the intricate interactions between the planet's moons and its rings. Stellar occultations observed by the Ultraviolet Imaging Spectrograph's High Speed Photometer onboard the Cassini spacecraft now enable the direct study of the small-scale structure that results from these interactions. In this dissertation, I present three distinct phenomena resulting from the small-scale physics of the rings. Many resonance locations with Saturn's external satellites lie within the main (A and B) rings. Two of these satellites, Janus and Epimetheus, have a unique co-orbital relationship and move radially to switch positions every 4.0 years. This motion also moves the resonance locations within the rings. As the spiral density waves created at these resonances interact, they launch an enormous solitary wave every eight years. I provide the first-ever observations of this never-predicted phenomenon and detail a possible formation mechanism. Previous studies have reported a population of kilometer-scale aggregates in Saturn's F ring, which likely form as a result of self-gravitation between ring particles in Saturn's Roche zone. I expand the known catalog of features in UVIS occultations and provide the first estimates of their density derived from comparisons with the A ring. These features are orders of magnitude less dense than previously believed, a fact which reconciles them with detections made by other means. Theory and indirect observations indicate that the smallest regular structures in the rings are wavelike aggregates called self-gravity wakes. Using the highest-resolution occulta- tions, I provide the first-ever direct detection of these features by identifying the gaps that represent the minima of the wakes. I demonstrate that the distribution of these gaps is con- sistent with the broad brightness asymmetries previously observed in the rings. Furthermore, the presence of spiral density waves affects the formation of self-gravity waves.

Geological and structural interpretation of Peninsular Malaysia by marine and aeromagnetic data: Some preliminary results

NASA Astrophysics Data System (ADS)

Bahrudin, Nurul Fairuz Diyana Binti; Hamzah, Umar

2016-11-01

Magnetic data were processed to interpret the geology of Peninsular Malaysia especially in delineating the igneous bodies and structural lineament trends by potential field geophysical method. A total of about 32000 magnetic intensity data were obtained from Earth Magnetic Anomaly Grid (EMAG2) covering an area of East Sumatra to part of South China Sea within 99° E to 105° E Longitude and 1° N to 7°N Latitude. These data were used in several processing stages in generating the total magnetic intensity (TMI), reduce to equator (RTE), total horizontal derivative (THD) and total vertical derivative (TVD). Values of the possible surface and subsurface magnetic sources associated to the geological features of the study area. The magnetic properties are normally corresponding to features like igneous bodies and faults structures. The anomalies obtained were then compared to the geological features of the area. In general, the high magnetic anomalies of the TMI-RTE are closely matched with major igneous intrusion of Peninsular Malaysia such as the Main Range, Eastern Belt and the Mersing-Johor Bahru stretch. More dense lineaments of magnetic structures were observed in the THD and TVD results indicating the presence of more deep and shallow magnetic rich geological features. The positions of Bukit Tinggi, Mersing and Lepar faults are perfectly matched with the magnetic highs while the presence of Lebir and Bok Bak faults are not clearly observed in the magnetic results. The high magnetic values of igneous bodies may have concealed and obscured the magnetic values representing these faults.

Structural insight into the binding interactions of modeled structure of Arabidopsis thaliana urease with urea: an in silico study.

PubMed

Yata, Vinod Kumar; Thapa, Arun; Mattaparthi, Venkata Satish Kumar

2015-01-01

Urease (EC 3.5.1.5., urea amidohydrolase) catalyzes the hydrolysis of urea to ammonia and carbon dioxide. Urease is present to a greater abundance in plants and plays significant role related to nitrogen recycling from urea. But little is known about the structure and function of the urease derived from the Arabidopsis thaliana, the model system of choice for research in plant biology. In this study, a three-dimensional structural model of A. thaliana urease was constructed using computer-aided molecular modeling technique. The characteristic structural features of the modeled structure were then studied using atomistic molecular dynamics simulation. It was observed that the modeled structure was stable and regions between residues index (50-80, 500-700) to be significantly flexible. From the docking studies, we detected the possible binding interactions of modeled urease with urea. Ala399, Ile675, Thr398, and Thr679 residues of A. thaliana urease were observed to be significantly involved in binding with the substrate urea. We also compared the docking studies of ureases from other sources such as Canavalia ensiformis, Helicobacter pylori, and Bacillus pasteurii. In addition, we carried out mutation analysis to find the highly mutable amino acid residues of modeled A. thaliana urease. In this particular study, we observed Met485, Tyr510, Ser786, Val426, and Lys765 to be highly mutable amino acids. These results are significant for the mutagenesis analysis. As a whole, this study expounds the salient structural features as well the binding interactions of the modeled structure of A. thaliana urease.

The Shock Dynamics of Heterogeneous YSO Jets: 3D Simulations Meet Multi-epoch Observations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hansen, E. C.; Frank, A.; Hartigan, P.

High-resolution observations of young stellar object (YSO) jets show them to be composed of many small-scale knots or clumps. In this paper, we report results of 3D numerical simulations designed to study how such clumps interact and create morphologies and kinematic patterns seen in emission line observations. Our simulations focus on clump scale dynamics by imposing velocity differences between spherical, over-dense regions, which then lead to the formation of bow shocks as faster clumps overtake slower material. We show that much of the spatial structure apparent in emission line images of jets arises from the dynamics and interactions of thesemore » bow shocks. Our simulations show a variety of time-dependent features, including bright knots associated with Mach stems where the shocks intersect, a “frothy” emission structure that arises from the presence of the Nonlinear Thin Shell Instability along the surfaces of the bow shocks, and the merging and fragmentation of clumps. Our simulations use a new non-equilibrium cooling method to produce synthetic emission maps in H α and [S ii]. These are directly compared to multi-epoch Hubble Space Telescope observations of Herbig–Haro jets. We find excellent agreement between features seen in the simulations and the observations in terms of both proper motion and morphologies. Thus we conclude that YSO jets may be dominated by heterogeneous structures and that interactions between these structures and the shocks they produce can account for many details of YSO jet evolution.« less

A New Dark Vortex

NASA Astrophysics Data System (ADS)

Wong, Michael

2015-10-01

A bright, unusually long-lived outburst of cloud activity on Neptune was observed in 2015. This led to speculation about whether the clouds were convective in nature, or bright companions to an unseen dark vortex (similar to the Great Dark Spot studied in detail by Voyager 2). HST OPAL images at blue wavelengths finally answered this question by discovering a new dark vortex at 45 deg S. We call this feature SDS-2015, for southern dark spot discovered in 2015.Dark vortices on Neptune are rare; SDS-2015 is only the fifth ever seen. All five were diverse in terms of size and shape, the distribution of bright companion clouds, and horizontal motions (oscillations and drifts). The drift of these vortices is highly sensitive to horizontal and vertical wind shear, making them valuable probes into the structure of Neptune's atmospheric jets. We have traced oscillations in the longitudinal positions of bright companion clouds of SDS-2015, but a second epoch of HST imaging is needed to measure latitudinal motion of the dark vortex itself.Only HST can image dark vortices on Neptune. Ground-based facilities lack the resolution to detect these low-contrast features at blue optical wavelengths, while infrared observations don't detect the dark spots themselves, only their bright companion features. We propose observations of SDS-2015, in order to measure its size, drift rate, and aerosol structure, and to trace its temporal evolution. The observations will improve our understanding of the life cycle of neptunian vortices, of their influence on the surrounding atmosphere, and of the structure of planetary jets.

Detailed electromagnetic simulation for the structural color of butterfly wings.

PubMed

Lee, R Todd; Smith, Glenn S

2009-07-20

Many species of butterflies exhibit interesting optical phenomena due to structural color. The physical reason for this color is subwavelength features on the surface of a single scale. The exposed surface of a scale is covered with a ridge structure. The fully three-dimensional, periodic, finite-difference time-domain method is used to create a detailed electromagnetic model of a generic ridge. A novel method for presenting the three-dimensional observed color pattern is developed. Using these tools, the change in color that is a result of varying individual features of the scale is explored. Computational models are developed that are similar to three butterflies: Morpho rhetenor, Troides magellanus, and Ancyluris meliboeus.

The RNA Newton polytope and learnability of energy parameters.

PubMed

Forouzmand, Elmirasadat; Chitsaz, Hamidreza

2013-07-01

Computational RNA structure prediction is a mature important problem that has received a new wave of attention with the discovery of regulatory non-coding RNAs and the advent of high-throughput transcriptome sequencing. Despite nearly two score years of research on RNA secondary structure and RNA-RNA interaction prediction, the accuracy of the state-of-the-art algorithms are still far from satisfactory. So far, researchers have proposed increasingly complex energy models and improved parameter estimation methods, experimental and/or computational, in anticipation of endowing their methods with enough power to solve the problem. The output has disappointingly been only modest improvements, not matching the expectations. Even recent massively featured machine learning approaches were not able to break the barrier. Why is that? The first step toward high-accuracy structure prediction is to pick an energy model that is inherently capable of predicting each and every one of known structures to date. In this article, we introduce the notion of learnability of the parameters of an energy model as a measure of such an inherent capability. We say that the parameters of an energy model are learnable iff there exists at least one set of such parameters that renders every known RNA structure to date the minimum free energy structure. We derive a necessary condition for the learnability and give a dynamic programming algorithm to assess it. Our algorithm computes the convex hull of the feature vectors of all feasible structures in the ensemble of a given input sequence. Interestingly, that convex hull coincides with the Newton polytope of the partition function as a polynomial in energy parameters. To the best of our knowledge, this is the first approach toward computing the RNA Newton polytope and a systematic assessment of the inherent capabilities of an energy model. The worst case complexity of our algorithm is exponential in the number of features. However, dimensionality reduction techniques can provide approximate solutions to avoid the curse of dimensionality. We demonstrated the application of our theory to a simple energy model consisting of a weighted count of A-U, C-G and G-U base pairs. Our results show that this simple energy model satisfies the necessary condition for more than half of the input unpseudoknotted sequence-structure pairs (55%) chosen from the RNA STRAND v2.0 database and severely violates the condition for ~ 13%, which provide a set of hard cases that require further investigation. From 1350 RNA strands, the observed 3D feature vector for 749 strands is on the surface of the computed polytope. For 289 RNA strands, the observed feature vector is not on the boundary of the polytope but its distance from the boundary is not more than one. A distance of one essentially means one base pair difference between the observed structure and the closest point on the boundary of the polytope, which need not be the feature vector of a structure. For 171 sequences, this distance is larger than two, and for only 11 sequences, this distance is larger than five. The source code is available on http://compbio.cs.wayne.edu/software/rna-newton-polytope.

Star formation and ISM morphology in tidally induced spiral structures

NASA Astrophysics Data System (ADS)

Pettitt, Alex R.; Tasker, Elizabeth J.; Wadsley, James W.; Keller, Ben W.; Benincasa, Samantha M.

2017-07-01

Tidal encounters are believed to be one of the key drivers of galactic spiral structure in the Universe. Such spirals are expected to produce different morphological and kinematic features compared to density wave and dynamic spiral arms. In this work, we present high-resolution simulations of a tidal encounter of a small mass companion with a disc galaxy. Included are the effects of gas cooling and heating, star formation and stellar feedback. The structure of the perturbed disc differs greatly from the isolated galaxy, showing clear spiral features that act as sites of new star formation, and displaying interarm spurs. The two arms of the galaxy, the bridge and tail, appear to behave differently; with different star formation histories and structure. Specific attention is focused on offsets between gas and stellar spiral features which can be directly compared to observations. We find that some offsets do exist between different media, with gaseous arms appearing mostly on the convex side of the stellar arms, though the exact locations appear highly time dependent. These results further highlight the differences between tidal spirals and other theories of arm structure.

Iris-based medical analysis by geometric deformation features.

PubMed

Ma, Lin; Zhang, D; Li, Naimin; Cai, Yan; Zuo, Wangmeng; Wang, Kuanguan

2013-01-01

Iris analysis studies the relationship between human health and changes in the anatomy of the iris. Apart from the fact that iris recognition focuses on modeling the overall structure of the iris, iris diagnosis emphasizes the detecting and analyzing of local variations in the characteristics of irises. This paper focuses on studying the geometrical structure changes in irises that are caused by gastrointestinal diseases, and on measuring the observable deformations in the geometrical structures of irises that are related to roundness, diameter and other geometric forms of the pupil and the collarette. Pupil and collarette based features are defined and extracted. A series of experiments are implemented on our experimental pathological iris database, including manual clustering of both normal and pathological iris images, manual classification by non-specialists, manual classification by individuals with a medical background, classification ability verification for the proposed features, and disease recognition by applying the proposed features. The results prove the effectiveness and clinical diagnostic significance of the proposed features and a reliable recognition performance for automatic disease diagnosis. Our research results offer a novel systematic perspective for iridology studies and promote the progress of both theoretical and practical work in iris diagnosis.

The Effects of Structure and Source Complexity on Waveforms: Crustal Structure of Tibet and the Recovery of Complex Seismic Sources

DTIC Science & Technology

1989-09-07

features such as the northern Anatolian fault are observed. After considerable convergence and shortening within Asia, lithospheric delamination perhaps...history of an earthquake as viewed by geologists and seismologists. There are many examples of earthquakes which show an apparent poor correlation of

Anomalous High-Energy Waterfall-Like Electronic Structure in 5 d Transition Metal Oxide Sr2IrO4 with a Strong Spin-Orbit Coupling

NASA Astrophysics Data System (ADS)

Liu, Yan; Yu, Li; Jia, Xiaowen; Zhao, Jianzhou; Weng, Hongming; Peng, Yingying; Chen, Chaoyu; Xie, Zhuojin; Mou, Daixiang; He, Junfeng; Liu, Xu; Feng, Ya; Yi, Hemian; Zhao, Lin; Liu, Guodong; He, Shaolong; Dong, Xiaoli; Zhang, Jun; Xu, Zuyan; Chen, Chuangtian; Cao, Gang; Dai, Xi; Fang, Zhong; Zhou, X. J.

2015-08-01

The low energy electronic structure of Sr2IrO4 has been well studied and understood in terms of an effective Jeff = 1/2 Mott insulator model. However, little work has been done in studying its high energy electronic behaviors. Here we report a new observation of the anomalous high energy electronic structure in Sr2IrO4. By taking high-resolution angle-resolved photoemission measurements on Sr2IrO4 over a wide energy range, we have revealed for the first time that the high energy electronic structures show unusual nearly-vertical bands that extend over a large energy range. Such anomalous high energy behaviors resemble the high energy waterfall features observed in the cuprate superconductors. While strong electron correlation plays an important role in producing high energy waterfall features in the cuprate superconductors, the revelation of the high energy anomalies in Sr2IrO4, which exhibits strong spin-orbit coupling and a moderate electron correlation, points to an unknown and novel route in generating exotic electronic excitations.

Anomalous High-Energy Waterfall-Like Electronic Structure in 5 d Transition Metal Oxide Sr2IrO4 with a Strong Spin-Orbit Coupling.

PubMed

Liu, Yan; Yu, Li; Jia, Xiaowen; Zhao, Jianzhou; Weng, Hongming; Peng, Yingying; Chen, Chaoyu; Xie, Zhuojin; Mou, Daixiang; He, Junfeng; Liu, Xu; Feng, Ya; Yi, Hemian; Zhao, Lin; Liu, Guodong; He, Shaolong; Dong, Xiaoli; Zhang, Jun; Xu, Zuyan; Chen, Chuangtian; Cao, Gang; Dai, Xi; Fang, Zhong; Zhou, X J

2015-08-12

The low energy electronic structure of Sr2IrO4 has been well studied and understood in terms of an effective Jeff = 1/2 Mott insulator model. However, little work has been done in studying its high energy electronic behaviors. Here we report a new observation of the anomalous high energy electronic structure in Sr2IrO4. By taking high-resolution angle-resolved photoemission measurements on Sr2IrO4 over a wide energy range, we have revealed for the first time that the high energy electronic structures show unusual nearly-vertical bands that extend over a large energy range. Such anomalous high energy behaviors resemble the high energy waterfall features observed in the cuprate superconductors. While strong electron correlation plays an important role in producing high energy waterfall features in the cuprate superconductors, the revelation of the high energy anomalies in Sr2IrO4, which exhibits strong spin-orbit coupling and a moderate electron correlation, points to an unknown and novel route in generating exotic electronic excitations.

PL-VIO: Tightly-Coupled Monocular Visual–Inertial Odometry Using Point and Line Features

PubMed Central

Zhao, Ji; Guo, Yue; He, Wenhao; Yuan, Kui

2018-01-01

To address the problem of estimating camera trajectory and to build a structural three-dimensional (3D) map based on inertial measurements and visual observations, this paper proposes point–line visual–inertial odometry (PL-VIO), a tightly-coupled monocular visual–inertial odometry system exploiting both point and line features. Compared with point features, lines provide significantly more geometrical structure information on the environment. To obtain both computation simplicity and representational compactness of a 3D spatial line, Plücker coordinates and orthonormal representation for the line are employed. To tightly and efficiently fuse the information from inertial measurement units (IMUs) and visual sensors, we optimize the states by minimizing a cost function which combines the pre-integrated IMU error term together with the point and line re-projection error terms in a sliding window optimization framework. The experiments evaluated on public datasets demonstrate that the PL-VIO method that combines point and line features outperforms several state-of-the-art VIO systems which use point features only. PMID:29642648

First principles and experimental study of the electronic structure and phase stability of bulk thallium bromide

NASA Astrophysics Data System (ADS)

Smith, Holland M.; Zhou, Yuzhi; Ciampi, Guido; Kim, Hadong; Cirignano, Leonard J.; Shah, Kanai S.; Haller, E. E.; Chrzan, D. C.

2013-08-01

We apply state-of-art first principle calculations to study the polymorphism and electronic structure of three previously reported phases of TlBr. The calculated band structures of NaCl-structure phase and orthorhombic-structure phase have different features than that of commonly observed CsCl-structure phase. We further interpret photoluminescence spectra based on our calculations. Several peaks close to calculated band gap values of the NaCl-structure phase and the orthorhombic-structure phase are found in unpolished TlBr samples.

Nakhla: a Martian Meteorite with Indigenous Organic Carbonaceous Features

NASA Technical Reports Server (NTRS)

McKay, D. S.; Gibson, E. K.; Thomas-Keprta, K. L.; Clemett, S. J.; Le, L.; Rahman, Z.; Wentworth, S. J.

2011-01-01

The Nakhla meteorite possesses discrete, well defined, structurally coherent morphologies of carbonaceous phases present within iddingsite alteration zones. Based upon both isotopic measurements and analysis of organic phases the presence of pre-terrestrial organics is now recognized. Within the microcrystalline layers of Nakhla s iddingsite, discrete clusters of salt crystals are present. These salts are predominantly halite (NaCl) with minor MgCl2 crystals. Some CaSO4, likely gypsum, appears to be partially intergrown with some of the halite. EDX mapping shows discrete C-rich features are interspersed among these crystals. A hollow semi-spherical bowl structure ( 3 m ) has been identified and analyzed after using a focused ion beam (FIB) to cut a transverse TEM thin section of the feature and the underlying iddingsite. TEM/EDX analysis reveals that the feature is primarily carbonaceous containing C with lesser amounts of Si, S, Ca, Cl, F, Na, and minor Mn and Fe; additionally a small peak consistent with N, which has been previously seen in Nakhla carbonaceous matter, is also present. Selected area electron diffraction (SAED) shows that this C-rich material is amorphous (lacking any long-range crystallographic order) and is not graphite or carbonate. Micro-Raman spectra acquired from the same surface from which the FIB section was extracted demonstrate a typical kerogen-like D and G band structure with a weak absorption peak at 1350 and a stronger peak at 1600/cm. The C-rich feature is intimately associated with both the surrounding halite and underlying iddingsite matrix. Both iddingsite and salts are interpreted as having formed as evaporate assemblages from progressive evaporation of water bodies on Mars. This assemblage, sans the carbonaceous moieties, closely resembles iddingsite alteration features previously described which were interpreted as indigenous Martian assemblages. These distinctive macromolecular carbonaceous structures in Nakhla may represent one of the sources of the high molecular weight organic material previously identified in Nakhla. While we do not speculate on the origin of these unique carbonaceous structures, we note that the significance of such observations is that it may allow us to construct a C-cycle for Mars based on the C chemistry of the Martian meteorites with obvious implications for astrobiology and the prebiotic evolution of Mars. In any case, our observations strongly suggest that organic C exists as micrometersize, discrete structures on Mars.

A Structural Study of Escherichia coli Cells Using an In Situ Liquid Chamber TEM Technology.

PubMed

Wang, Yibing; Chen, Xin; Cao, Hongliang; Deng, Chao; Cao, Xiaodan; Wang, Ping

2015-01-01

Studying cell microstructures and their behaviors under living conditions has been a challenging subject in microbiology. In this work, in situ liquid chamber TEM was used to study structures of Escherichia coli cells in aqueous solutions at a nanometer-scale resolution. Most of the cells remained intact under electron beam irradiation, and nanoscale structures were observed during the TEM imaging. The analysis revealed structures of pili surrounding the E. coli cells; the movements of the pili in the liquid were also observed during the in situ tests. This technology also allowed the observation of features of the nucleoid in the E. coli cells. Overall, in situ TEM can be applied as a valuable tool to study real-time microscopic structures and processes in microbial cells residing in native aqueous solutions.

WONKA: objective novel complex analysis for ensembles of protein-ligand structures.

PubMed

Bradley, A R; Wall, I D; von Delft, F; Green, D V S; Deane, C M; Marsden, B D

2015-10-01

WONKA is a tool for the systematic analysis of an ensemble of protein-ligand structures. It makes the identification of conserved and unusual features within such an ensemble straightforward. WONKA uses an intuitive workflow to process structural co-ordinates. Ligand and protein features are summarised and then presented within an interactive web application. WONKA's power in consolidating and summarising large amounts of data is described through the analysis of three bromodomain datasets. Furthermore, and in contrast to many current methods, WONKA relates analysis to individual ligands, from which we find unusual and erroneous binding modes. Finally the use of WONKA as an annotation tool to share observations about structures is demonstrated. WONKA is freely available to download and install locally or can be used online at http://wonka.sgc.ox.ac.uk.

The crustal tectonics and history of Europa: A structural, morphological, and comparative analysis. M.S. Thesis

NASA Technical Reports Server (NTRS)

Schenk, P. M.

1984-01-01

An evaluation of surface features and structures on the Galilean moon Europa is made using the available high resolution Voyager imagery, low resolution support imaging, and what understanding of ice structure and mechanical behavior science has that is applicable to the problem. A general discussion of the history of Europa studies and the fundamental global morphology is undertaken. The visible lineament and terrain patterns are described, and possible origins discussed. Observations of faulting and block rotation previously described are amplified. A comparison of Europa's structures to terrestrial sea ice and lava lake crust features is also included. Finally, an attempt is made at synthesizing a unified model for the evolution of Europa's crust is presented which is compared with models developed by others.

REVIEWS OF TOPICAL PROBLEMS: Prediction and discovery of new structures in spiral galaxies

NASA Astrophysics Data System (ADS)

Fridman, Aleksei M.

2007-02-01

A review is given of the last 20 years of published research into the nature, origin mechanisms, and observed features of spiral-vortex structures found in galaxies. The so-called rotating shallow water experiments are briefly discussed, carried out with a facility designed by the present author and built at the Russian Scientific Center 'Kurchatov Institute' to model the origin of galactic spiral structures. The discovery of new vortex-anticyclone structures in these experiments stimulated searching for them astronomically using the RAS Special Astrophysical Observatory's 6-meter BTA optical telescope, formerly the world's and now Europe's largest. Seven years after the pioneering experiments, Afanasyev and the present author discovered the predicted giant anticyclones in the galaxy Mrk 1040 by using BTA. Somewhat later, the theoretical prediction of giant cyclones in spiral galaxies was made, also to be verified by BTA afterwards. To use the observed line-of-sight velocity field for reconstructing the 3D velocity vector distribution in a galactic disk, a method for solving a problem from the class of ill-posed astrophysical problems was developed by the present author and colleagues. In addition to the vortex structure, other new features were discovered — in particular, slow bars (another theoretical prediction), for whose discovery an observational test capable of distinguishing them from their earlier-studied normal (fast) counterparts was designed.

Latitude dependence of solar wind velocity observed at not less than 1 AU

NASA Technical Reports Server (NTRS)

Mitchell, D. G.; Roelof, E. C.; Wolfe, J. H.

1981-01-01

The large-scale solar wind velocity structure in the outer heliosphere has been systematically analyzed for Carrington rotations 1587-1541 (March 1972 to April 1976). Spacecraft data were taken from Imp 7/8 at earth, Pioneer 6, 8, and 9 near 1 AU, and Pioneer 10 and 11 between 1.6 and 5 AU. Using the constant radial velocity solar wind approximation to map all of the velocity data to its high coronal emission heliolongitude, the velocity structure observed at different spacecraft was examined for latitudinal dependence and compared with coronal structure in soft X-rays and H-alpha absorption features. The constant radial velocity approximation usually remains self-consistent in decreasing or constant velocity solar wind out to 5 AU, enabling us to separate radial from latitudinal propagation effects. Several examples of sharp nonmeridional stream boundaries in interplanetary space (about 5 deg latitude in width), often directly associated with features in coronal X-rays and H-alpha were found.

Properties of nanostructures obtained by anodization of aluminum in phosphoric acid at moderate potentials

NASA Astrophysics Data System (ADS)

Zaraska, L.; Sulka, G. D.; Jaskuła, M.

2009-01-01

The influence of the process duration, anodizing potential and methanol addition on the structural features of porous anodic alumina formed in a 0.3 M H3PO4 solutions by twostep self-organized anodizing was investigated for potentials ranging from 100 to 170 V. The structural features of porous structures including pore diameter and interpore distance were evaluated from FE-SEM top-view images for samples anodized in the presence and absence of methanol. For the highest studied anodizing time and methanol volume fraction, an excellent agreement between experimental values of the interpore distance and theoretical predictions was observed. The pore arrangement regularity was analyzed for various electrolyte compositions and anodizing potentials. It was found that the regularity ratio of porous alumina increases linearly with increasing anodizing potential and time. The addition of methanol improves the quality of nanostructures and especially better uniformity of pore sizes is observed in the presence of the highest studied methanol content.

An Analysis of Cassini Observations Regarding the Structure of Jupiter's Equatorial Atmosphere

NASA Technical Reports Server (NTRS)

Choi, David S.; Simon-Miller, Amy A.

2012-01-01

A variety of intriguing atmospheric phenomena reside on both sides of Jupiter's equator. 5-micron bright hot spots and opaque plumes prominently exhibit dynamic behavior to the north, whereas compact, dark chevron-shaped features and isolated anticyclonic disturbances periodically occupy the southern equatorial latitudes. All of these phenomena are associated with the vertical and meridional perturbations of Rossby waves disturbing the mean atmospheric state. As previous observational analysis and numerical simulations have investigated the dynamics of the region, an examination of the atmosphere's vertical structure though radiative transfer analysis is necessary for improved understanding of this unique environment. Here we present preliminary analysis of a multispectral Cassini imaging data set acquired during the spacecraft's flyby of Jupiter in 2000. We evaluated multiple methane and continuum spectral channels at available viewing angles to improve constraints on the vertical structure of the haze and cloud layers comprising these interesting features. Our preliminary results indicate distinct differences in the structure for both hemispheres. Upper troposphere hazes and cloud layers are prevalent in the northern equatorial latitudes, but are not present in corresponding southern latitudes. Continued analysis will further constrain the precise structure present in these phenomena and the differences between them.

Structural Mapping and Geomorphology of Ireland's Southwest Continental Shelf Using High Resolution Sonar

NASA Astrophysics Data System (ADS)

Bowden, S.; Wireman, R.

2016-02-01

Bathymetric surveys were conducted on the continental shelf off the southwest coast of County Cork, Ireland by the Marine Institute of Ireland, the Geological Survey of Ireland, and the INFOMAR project. Data were collected from July 2006 through September 2014 using a Kongsberg EM2040 multibeam echosounder aboard the R/Vs Celtic Voyager and Keary, and a Kongsberg EM1002 on the R/V Celtic Explorer. Sonar data were post-processed with CARIS HIPS and SIPS 9.0 to create 2D and 3D bathymetric and backscatter intensity surfaces with a resolution of 1 m. The offshore study site is part of the 286 Ma western Variscian orogenic front and has several massive outcrops, exhibiting 5 to 20 m of near-vertical relief. These outcrops were structurally mapped and relatively aged, and exhibit significant folding, rotation, tilting, and joint systems. Google Earth, ArcGIS, and previous terrestrial studies were used to further analyze how geomorphology is controlled by seafloor composition and structural features. Rock type and age were interpreted by comparing fracture analysis of the joints and fold trends to similar onshore outcrops documented previously, to determine an age of 416-299 Ma for the shelf's outcropping strata and associated structural features. The oldest features observed are regional anticlines and synclines containing Upper Devonian Old Red Sandstone and Lower Carboniferous shales. Within the shale layers are NE-SW plunging parasitic chevron folds. Jointing is observed in both sandstone and shale layers and is superimposed on chevron folding, with cross joints appearing to influence shallow current patterns. Rotation of the regional folds is the youngest structural feature, as both the parasitic folds and joint systems are warped. Our study shows that high resolution sonar is an effective tool for offshore structural mapping and is an important resource for understanding the geomorphology and geologic history of submerged outcrops on continental shelf systems.

Observations and Analysis of the GK Persei Nova Shell and its "Jet-like" Feature

NASA Astrophysics Data System (ADS)

Harvey, E.; Redman, M. P.; Boumis, P.; Akras, S.

2015-12-01

GK Persei (1901, the "Firework Nebula") is an old but bright nova remnant that offers a chance to probe the physics and kinematics of nova shells. The kinematics in new and archival longslit optical echelle spectra were analysed using the SHAPE software. New imaging from the Aristarchos telescope continues to track the proper motion, extinction and structural evolution of the knots, which have been observed intermittently over several decades. We present for the first time, kinematical constraints on a large faint "jet" feature, that was previously detected beyond the shell boundary. These observational constraints allow for the generation of models for individual knots, interactions within knot complexes, and the "jet" feature. Put together, and taking into account dwarf-nova accelerated winds emanating from the central source, these data and models give a deeper insight into the GK Per nova remnant as a whole.

Infrared Surveys of Hawaiian Volcanoes: Aerial surveys with infrared imaging radiometer depict volcanic thermal patterns and structural features.

PubMed

Fisher, W A; Moxham, R M; Polcyn, F; Landis, G H

1964-11-06

Aerial infrared-sensor surveys of Kilauea volcano have depicted the areal extent and the relative intensity of abnormal thermal features in the caldera area of the volcano and along its associated rift zones. Many of these anomalies show correlation with visible steaming and reflect convective transfer of heat to the surface from subterranean sources. Structural details of the volcano, some not evident from surface observation, are also delineated by their thermal abnormalities. Several changes were observed in the patterns of infrared emission during the period of study; two such changes show correlation in location with subsequent eruptions, but the cause-and-effect relationship is uncertain. Thermal anomalies were also observed on the southwest flank of Mauna Loa; images of other volcanoes on the island of Hawaii, and of Haleakala on the island of Maui, revealed no thermal abnormalities. Approximately 25 large springs issuing into the ocean around the periphery of Hawaii have been detected. Infrared emission varies widely with surface texture and composition, suggesting that similar observations may have value for estimating surface conditions on the moon or planets.

Gas hydrate and spatial venting variations in the continental margin offshore Southwestern Taiwan

NASA Astrophysics Data System (ADS)

Lin, S.; Lim, Y.; Hsieh, W.; Yang, T.; Wang, Y.

2006-12-01

Strong BSR, high methane contents and rapid sulfate reduction were found in the continental margin sediments offshore southwestern Taiwan. In order to identify the venting phenomena and its relationship with gas hydrate, this research investigate sea floor vent features using WHOI?|s Towcam system as well as piston core in the study region. A total of 10 dives were conducted on board the r/v OR-1. Pore water sulfate, dissolved sulfide, methane, chloride, del O18 ratio, sediment organic carbon, carbonate content and carbonate del C13 ratio, pyrite-S were measured Large spatial variations were found based on pictures obtained from Towcam system and piston cores. Active venting features include bacteria mat, live dense bivalve patches, gas plume, temperature and salinity fluctuations, rapid sulfate reduction and high concentrations of methane in sediments. In addition, vent chimney, pockmark and large authigenic carbonate buildup were also observed in the active venting area. In contrast, in some areas without active venting features, scatter dead chimney, semi- buried carbonate structures, and dead bivalves were found. Total sulfate depletion was found at depth as shallow as 1 meter below sediment water interface in area near active vent whereas almost no sulfate depletion was observed in areas without any vent feature. Stages of carbonate build up existed, with initial phase dominated by small tube, chimney, and later with massive carbonate structures protruding the sea floor. The appearances of massive carbonate buildup structures seemed to indicate the end stage of gas hydrate venting phenomena.

A distance constrained synaptic plasticity model of C. elegans neuronal network

NASA Astrophysics Data System (ADS)

Badhwar, Rahul; Bagler, Ganesh

2017-03-01

Brain research has been driven by enquiry for principles of brain structure organization and its control mechanisms. The neuronal wiring map of C. elegans, the only complete connectome available till date, presents an incredible opportunity to learn basic governing principles that drive structure and function of its neuronal architecture. Despite its apparently simple nervous system, C. elegans is known to possess complex functions. The nervous system forms an important underlying framework which specifies phenotypic features associated to sensation, movement, conditioning and memory. In this study, with the help of graph theoretical models, we investigated the C. elegans neuronal network to identify network features that are critical for its control. The 'driver neurons' are associated with important biological functions such as reproduction, signalling processes and anatomical structural development. We created 1D and 2D network models of C. elegans neuronal system to probe the role of features that confer controllability and small world nature. The simple 1D ring model is critically poised for the number of feed forward motifs, neuronal clustering and characteristic path-length in response to synaptic rewiring, indicating optimal rewiring. Using empirically observed distance constraint in the neuronal network as a guiding principle, we created a distance constrained synaptic plasticity model that simultaneously explains small world nature, saturation of feed forward motifs as well as observed number of driver neurons. The distance constrained model suggests optimum long distance synaptic connections as a key feature specifying control of the network.

V1494 Aql: Eclipsing Fast Nova with an Unusual Orbital Light Curve

NASA Astrophysics Data System (ADS)

Kato, Taichi; Ishioka, Ryoko; Uemura, Makoto; Starkey, Donn R.; Krajci, Tom

2004-03-01

We present the time-resolved photometry of V1494 Aql (Nova Aql 1999 No. 2) between 2001 November and 2003 June. The object is confirmed to be an eclipsing nova with a period of 0.1346138(2)d. The eclipses were present in all observed epochs. The orbital light curve shows a rather unusual profile, consisting of a bump-like feature at phase 0.6-0.7 and a dip-like feature at phase 0.2-0.4. These features were probably persistently present in all available observations between 2001 and 2003. A period analysis outside of the eclipses has confirmed that these variations have a period common to the orbital period, and are unlikely to be interpreted as superhumps. We suspect that the structure (probably in the accretion disk) fixed in the binary rotational frame is somehow responsible for this feature.

Transverse magnetic field impact on waveguide modes of photonic crystals.

PubMed

Sylgacheva, Daria; Khokhlov, Nikolai; Kalish, Andrey; Dagesyan, Sarkis; Prokopov, Anatoly; Shaposhnikov, Alexandr; Berzhansky, Vladimir; Nur-E-Alam, Mohammad; Vasiliev, Mikhail; Alameh, Kamal; Belotelov, Vladimir

2016-08-15

This Letter presents a theoretical and experimental study of waveguide modes of one-dimensional magneto-photonic crystals magnetized in the in-plane direction. It is shown that the propagation constants of the TM waveguide modes are sensitive to the transverse magnetization and the spectrum of the transverse magneto-optical Kerr effect has resonant features at mode excitation frequencies. Two types of structures are considered: a non-magnetic photonic crystal with an additional magnetic layer on top and a magneto-photonic crystal with a magnetic layer within each period. We found that the magneto-optical non-reciprocity effect is greater in the first case: it has a magnitude of δ∼10^-4, while the second structure type demonstrates δ∼10^-5 only, due to the higher asymmetry of the claddings of the magnetic layer. Experimental observations show resonant features in the optical and magneto-optical Kerr effect spectra. The measured dispersion properties are in good agreement with the theoretical predictions. An amplitude of light intensity modulation of up to 2.5% was observed for waveguide mode excitation within the magnetic top layer of the non-magnetic photonic crystal structure. The presented theoretical approach may be utilized for the design of magneto-optical sensors and modulators requiring pre-determined spectral features.

Examination of Bursty Electromagnetic Waves Observed During Intervals of Turbulent Magnetosheath Reconnection

NASA Technical Reports Server (NTRS)

Adrian, Mark L.; Wendel, D. E.

2011-01-01

We investigate observations of intense bursts of electromagnetic waves in association with magnetic reconnection in the turbulent magnetosheath. These structured, broadband bursts occur above 80-Hz, often displaying features reminiscent of absorption bands and are observed at local minima in the magnetic field. We present detailed analyses of these intense bursts of electromagnetic waves and quantify their proximity to X- and O-nulls.

Radio and optical observations of 0218+357 - The smallest Einstein ring?

NASA Technical Reports Server (NTRS)

O'Dea, Christopher P.; Baum, Stefi A.; Stanghellini, Carlo; Dey, Arjun; Van Breugel, Wil; Deustua, Susana; Smith, Eric P.

1992-01-01

VLA radio observations and optical imaging and spectroscopy of the Einstein radio ring 0218+357 are presented. The ring is detected at 22.4 GHz and shows a basically similar structure at 5, 15, and 22.4 GHz. The B component has varied and was about 15 percent brighter in the 8.4 GHz data than in the data of Patnaik et al. (1992). The ring is highly polarized. A weak jetlike feature extending out roughly 2 arcsec to the southeast of component A is detected at 6 cm. The source has amorphous radio structure extending out to about 11 arcsec from the core. For an adopted redshift of 0.68, the extended radio emission is very powerful. The optical spectrum is rather red and shows no strong features. A redshift of about 0.68 is obtained. The identification is a faint compact m(r) about 20 galaxy which extends to about 4.5 arcsec (about 27 kpc). As much as 50 percent of the total light may be due to a central AGN. The observed double core and ring may be produced by an off-center radio core with extended radio structure.

GrowYourIC: A Step Toward a Coherent Model of the Earth's Inner Core Seismic Structure

NASA Astrophysics Data System (ADS)

Lasbleis, Marine; Waszek, Lauren; Day, Elizabeth A.

2017-11-01

A complex inner core structure has been well established from seismic studies, showing radial and lateral heterogeneities at various length scales. Yet no geodynamic model is able to explain all the features observed. One of the main limits for this is the lack of tools to compare seismic observations and numerical models successfully. We use here a new Python tool called GrowYourIC to compare models of inner core structure. We calculate properties of geodynamic models of the inner core along seismic raypaths, for random or user-specified data sets. We test kinematic models which simulate fast lateral translation, superrotation, and differential growth. We explore first the influence on a real inner core data set, which has a sparse coverage of the inner core boundary. Such a data set is however able to successfully constrain the hemispherical boundaries due to a good sampling of latitudes. Combining translation and rotation could explain some of the features of the boundaries separating the inner core hemispheres. The depth shift of the boundaries, observed by some authors, seems unlikely to be modeled by a fast translation but could be produced by slow translation associated with superrotation.

ON THE ORIGIN OF THE 11.3 MICRON UNIDENTIFIED INFRARED EMISSION FEATURE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sadjadi, SeyedAbdolreza; Zhang, Yong; Kwok, Sun, E-mail: sunkwok@hku.hk

2015-07-01

The 11.3 μm emission feature is a prominent member of the family of unidentified infrared emission (UIE) bands and is frequently attributed to out-of-plane bending modes of polycyclic aromatic hydrocarbon (PAH) molecules. We have performed quantum mechanical calculations of 60 neutral PAH molecules and found that it is difficult to reconcile the observed astronomical feature with any or a mix of these PAH molecules. We have further analyzed the fitting of spectra of several astronomical objects by the NASA PAH database program and found that reasonable fittings to the observed spectra are only possible by including significant contributions from oxygen-more » and/or magnesium-containing molecules in the mix. A mix of pure PAH molecules, even including units of different sizes, geometry, and charged states, is unable to fit the astronomical spectra. Preliminary theoretical results on the vibrational spectra of simple molecules with mixed aromatic/aliphatic structures show that these structures have consistent clusters of vibrational modes and could be viable carriers of the UIE bands.« less

Structural analysis of oligomeric and protofibrillar Aβ amyloid pair structures considering F20L mutation effects using molecular dynamics simulations.

PubMed

Lee, Myeongsang; Chang, Hyun Joon; Baek, Inchul; Na, Sungsoo

2017-04-01

Aβ amyloid proteins are involved in neuro-degenerative diseases such as Alzheimer's, Parkinson's, and so forth. Because of its structurally stable feature under physiological conditions, Aβ amyloid protein disrupts the normal cell function. Because of these concerns, understanding the structural feature of Aβ amyloid protein in detail is crucial. There have been some efforts on lowering the structural stabilities of Aβ amyloid fibrils by decreasing the aromatic residues characteristic and hydrophobic effect. Yet, there is a lack of understanding of Aβ amyloid pair structures considering those effects. In this study, we provide the structural characteristics of wildtype (WT) and phenylalanine residue mutation to leucine (F20L) Aβ amyloid pair structures using molecular dynamics simulation in detail. We also considered the polymorphic feature of F20L and WT Aβ pair amyloids based on the facing β-strand directions between the amyloid pairs. As a result, we were able to observe the varying effects of mutation, polymorphism, and protofibril lengths on the structural stability of pair amyloids. Furthermore, we have also found that opposite structural stability exists on a certain polymorphic Aβ pair amyloids depending on its oligomeric or protofibrillar state, which can be helpful for understanding the amyloid growth mechanism via repetitive fragmentation and elongation mechanism. Proteins 2017; 85:580-592. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

Observation of Reconnection Features in the Chromosphere through a Chromospheric Jet Observed by SOT/Hinode

NASA Astrophysics Data System (ADS)

Singh, K. A. P.; Isobe, H.; Shibata, K.

2012-08-01

High-resolution observations from Solar Optical Telescope (SOT) onboard Hinode has shown number of jet-like structures in the solar chromosphere. One of the key features in the observations is the clear presence of tiny, inverted Y-shaped jets called Chromospheric Anemone Jets. These jets are supposed to be formed as a result of the magnetic reconnection, however, whether and how fast magnetic reconnection is realized in partially ionized, fully collisional chromosphere is poorly understood. In this paper, we report the observation of a well resolved jet phenomenon observed from SOT. The jets were found to recur at the same location. We observed multiple blobs ejected along the jet. The jets occur after the ejection of blobs. It is noticed that the brightness enhancements at the footpoint of the jet are related with the height of the jet. These features indicate an important role of plasmoid dynamics and intermittent nature of the chromospheric reconnection. The lifetime of the plasmoid is 30 s - 50 s. We noticed the undulations in chromospheric anemone jets. The evolution of a single jet is consistent with the Sweeping-Magnetic-Twist mechanism proposed by Shibata and Uchida (1986).

A rule-based shell to hierarchically organize HST observations

NASA Technical Reports Server (NTRS)

Bose, Ashim; Gerb, Andrew

1995-01-01

An observing program on the Hubble Space Telescope (HST) is described in terms of exposures that are obtained by one or more of the instruments onboard the HST. These exposures are organized into a hierarchy of structures for purposes of efficient scheduling of observations. The process by which exposures get organized into the higher-level structures is called merging. This process relies on rules to determine which observations can be 'merged' into the same higher level structure, and which cannot. The TRANSformation expert system converts proposals for astronomical observations with HST into detailed observing plans. The conversion process includes the task of merging. Within TRANS, we have implemented a declarative shell to facilitate merging. This shell offers the following features: (1) an easy way of specifying rules on when to merge and when not to merge, (2) a straightforward priority mechanism for resolving conflicts among rules, (3) an explanation facility for recording the merging history, (4) a report generating mechanism to help users understand the reasons for merging, and (5) a self-documenting mechanism that documents all the merging rules that have been defined in the shell, ordered by priority. The merging shell is implemented using an object-oriented paradigm in CLOS. It has been a part of operational TRANS (after extensive testing) since July 1993. It has fulfilled all performance expectations, and has considerably simplified the process of implementing new or changed requirements for merging. The users are pleased with its report-generating and self-documenting features.

Comparative and Contrastive Observations on Scientific Titles Written in English and Spanish

ERIC Educational Resources Information Center

Soler, Viviana

2011-01-01

This research focuses on the structural construction of scientific titles in English and Spanish in research papers (RP) and review papers (RVP) in the biological and social sciences. The questions raised were (i) whether structural construction is a key distinctive feature between RP and RVP titles; (ii) whether the inherent peculiarities of…

Flow Structures within a Helicopter Rotor Hub Wake

NASA Astrophysics Data System (ADS)

Elbing, Brian; Reich, David; Schmitz, Sven

2015-11-01

A scaled model of a notional helicopter rotor hub was tested in the 48'' Garfield Thomas Water Tunnel at the Applied Research Laboratory Penn State. The measurement suite included total hub drag and wake velocity measurements (LDV, PIV, stereo-PIV) at three downstream locations. The main objective was to understand the spatiotemporal evolution of the unsteady wake between the rotor hub and the nominal location of the empennage (tail). Initial analysis of the data revealed prominent two- and four-per-revolution fluid structures linked to geometric hub features persisting into the wake far-field. In addition, a six-per-revolution fluid structure was observed in the far-field, which is unexpected due to the lack of any hub feature with the corresponding symmetry. This suggests a nonlinear interaction is occurring within the wake to generate these structures. This presentation will provide an overview of the experimental data and analysis with particular emphasis on these six-per-revolution structures.

The SEEDS of Planet Formation: Observations of Transitional Disks

NASA Technical Reports Server (NTRS)

Grady, Carol A.

2011-01-01

As part of its 5-year study, the Strategic Exploration of Exoplanets and Disk Systems (SEEDS) has already observed a number of YSOs with circumstellar disks, including 13 0.5-8 Myr old A-M stars with indications that they host wide gaps or central cavities in their circumstellar disks in millimeter or far-IR observations, or from deficits in warm dust thermal emission. For 8 of the disks, the 0.15" inner working angle of HiCIAO+A0188 samples material in the millimeter or mid-IR identified cavity. In one case we report detection of a previously unrecognized wide gap. For the remaining 4 stars, the SEEDS data sample the outer disk: in 3 cases, we present the first NIR imagery of the disks. The data for the youngest sample members 1-2 Myr) closely resemble coeval primordial disks. After approximately 3 Myr, the transitional disks show a wealth of structure including spiral features, rings, divots, and in some cases, largely cleared gaps in the disks which are not seen in coeval primordial disks. Some of these structural features are predicted consequences of Jovian-mass planets having formed in the disk, while others are novel features. We discuss the implications for massive planet formation timescales and mechanisms.

The SEEDS of Planet Formation: Observations of Transitional Disks

NASA Technical Reports Server (NTRS)

Grady, Carol

2011-01-01

As part of its 5-year study, the Strategic Exploration of Exoplanets and Disk Systems (SEEDS) has already observed a number of YSOs with circumstellar disks, including 13 0.5- 8 Myr old A-M stars with indications that they host wide gaps or central cavities in their circumstellar disks in millimeter or far-IR observations, or from deficits in warm dust thermal emission. For 8 of the disks, the 0.15" inner working angle of HiCIAO+A0188 samples material in the millimeter or mid-IR identified cavity. In one case we reprt detection of a previously unrecognized wide gap. For the remaining 4 stars, the SEEDS data sample the outer disk: in 3 cases, we present the first NIR imagery of the disks. The data for the youngest sample members (less than 1-2 Myr) closely resemble coeval primordial disks. After approximately 3 Myr, the transitional disks show a wealth of structure including spiral features, rings, divots, and in some cases, largely cleared gaps in the disks which are not seen in coeval primordial disks. Some of these structural features are predicted consequences of lovianmass planets having formed in the disk, while others are novel features. We discuss the implications for massive planet formation timescales and mechanisms.

Relation between Pressure Balance Structures and Polar Plumes from Ulysses High Latitude Observations

NASA Technical Reports Server (NTRS)

Yamauchi, Yohei; Suess, Steven T.; Sakurai, Takashi

2002-01-01

Ulysses observations have shown that pressure balance structures (PBSs) are a common feature in high-latitude, fast solar wind near solar minimum. Previous studies of Ulysses/SWOOPS plasma data suggest these PBSs may be remnants of coronal polar plumes. Here we find support for this suggestion in an analysis of PBS magnetic structure. We used Ulysses magnetometer data and applied a minimum variance analysis to magnetic discontinuities in PBSs. We found that PBSs preferentially contain tangential discontinuities, as opposed to rotational discontinuities and to non-PBS regions in the solar wind. This suggests that PBSs contain structures like current sheets or plasmoids that may be associated with network activity at the base of plumes.

Relation Between Pressure Balance Structures and Polar Plumes from Ulysses High Latitude Observations

NASA Technical Reports Server (NTRS)

Yamauchi, Y.; Suess, Steven T.; Sakurai, T.; Whitaker, Ann F. (Technical Monitor)

2001-01-01

Ulysses observations have shown that pressure balance structures (PBSs) are a common feature in high-latitude, fast solar wind near solar minimum. Previous studies of Ulysses/SWOOPS plasma data suggest these PBSs may be remnants of coronal polar plumes. Here we find support for this suggestion in an analysis of PBS magnetic structure. We used Ulysses magnetometer data and applied a minimum variance analysis to discontinuities. We found that PBSs preferentially contain tangential discontinuities, as opposed to rotational discontinuities and to non-PBS regions in the solar wind. This suggests that PBSs contain structures like current sheets or plasmoids that may be associated with network activity at the base of plumes.

Local and electronic structure around manganese in Cd0.98Mn0.02Te0.97Se0.03 studied by XAFS

NASA Astrophysics Data System (ADS)

Radisavljević, I.; Novaković, N.; Romčević, N.; Ivanović, N.

2013-04-01

X-ray Absorption Fine Structure (XAFS) technique was employed to study local electronic and structural features of Mn ions incorporated in Cd0.98Mn0.02Te0.97Se0.03. XAFS measurements performed at Mn K edge revealed that manganese Mn(II) ions are well incorporated into the host CdTe lattice (cubic zinc-blende structure type) and their immediate surrounding is found to be composed exclusively of Te atoms. The observed preference of Mn ions distribution around Te opposes earlier observations on the similar systems, where preferential Mn-Se over Mn-Te paring was found.

Synthesis of line profiles from models of structured winds

NASA Technical Reports Server (NTRS)

Puls, J.; Feldmeier, A.; Springmann, U. W. E.; Owocki, S. P.; Fullerton, A. W.

1994-01-01

On the basis of a careful analysis of resonance line formation (both for singlets and doublets) in structured winds, present time dependent models of the line driven winds of hot stars are shown to be able to explain a number of observational features with respect to variability and structure: they are (in principle) able to reproduce the black and broad troughs (without any artificial 'turbulence velocity') and the 'blue edge variability' observed in saturate resonance lines: they might explain the 'long lived narrow absorption components' often observed in unsaturated lines at high velocities; they predict a relation between the 'edge velocity' of UV-lines and the radiation temperature of the observed X-ray emission. As a first example of the extent to which theoretical models can be constrained by comparisons between observations and profiles calculated by spectrum synthesis from structured winds, we show here that models with deep-seated onset of structure formation (approximately greater than 1.1 R(sub *)) produce resonance lines which agree qualitatively with observational findings; in contrast, the here presented models with structure formation only well out in the wind (approximately greater than 1.6 R(sub *) fail in this respect.

Three-dimensional Magnetotelluric Inversion and Model Validation with Potential Field Data and Seismics for the Central Portion of Parana Sedimentary Basin in Brazil

NASA Astrophysics Data System (ADS)

La Terra, E. F.; Fontes, S. L.; Taveira, D. T.; Miquelutti, L. G.

2015-12-01

The Paraná basin, on the central-south region of the South American Plate, is one of the biggest South American intracratonic basins. It is composed by Paleozoic and Mesozoic sediments, which were covered by the enormous Cretaceous flood basalts, associated with the rifting of Gondwana and the opening of the South Atlantic Ocean. Its depocenter region, with a maximum estimated depth of just over 7000 m, was crossed by three magnetotelluric - MT profiles proposed by the Brazilian Petroleum Agency (ANP) aimed at better characterizing its geological structure, as the seismic images are very poor. The data include about 350 MT broadband soundings spanning from 1000 Hz down to 2,000 s. The MT data were processed using robust techniques and remote reference. Static shift observed in some stations were corrected based on Transient Electromagnetic - TEM measurements at each site. These models were integrated to existent gravity, magnetic and seismic data for a more comprehensive interpretation of the region. A pilot 3D model has also been constructed on a crustal scale covering the study area using four frequencies per decade in the 3D inversion scheme proposed by Siripunvaraporn et al. (2005). The inversion scheme produced a reliable model and the observations were adequately reproduced, with observed fitting particularly better for the deeper structures related to basement compared to the 2D results. The main features in the conductivity model correspond to known geological features. These included the conductivity structures obtained for the upper crust, i.e. the sedimentary sequences, underlain by more resistive material, assumed to be basement. Local resistive features in the near-surface are associated to volcanic basalts covering the sediments. Some highly resistivity horizontal and vertical bodies were associated to volcanic intrusion like dikes and sills. We observed depressions on basement consistent with half-graben structures possibly filled with sandstones.

Early Jurassic extensional inheritance in the Lurestan region of the Zagros fold-and-thrust belt, Iran.

NASA Astrophysics Data System (ADS)

Tavani, Stefano; Parente, Mariano; Vitale, Stefano; Puzone, Francesco; Erba, Elisabetta; Bottini, Cinzia; Morsalnejad, Davoud; Mazzoli, Stefano

2017-04-01

It has long been recognized that the tectonic architecture of the Zagros mountain belt was strongly controlled by inherited structures previously formed within the Arabian plate. These preexisting features span in age from the pre-Cambrian to the Mesozoic, showing different trends and deformation styles. Yet, these structures are currently not fully understood. This uncertainty is partly related with the paucity of exposures, which rarely allows a direct observation of these important deformation features. The Lurestan Province of Iran provides a remarkable exception, since it is one of the few places of the Zagros mountain belt where exposures of Triassic and Jurassic rocks are widespread. In this area we carried out structural observations on Mesozoic extensional structures developed at the southern margin of the Neo-Tethyan basin. Syn-sedimentary extensional faults are hosted within the Triassic-Cretaceous succession, being particularly abundant in the Jurassic portion of the stratigraphy. Early to Middle Jurassic syn-sedimentary faults are observed in different paleogeographic domains of the area, and their occurrence is coherent with the subsequent transition from shallow-water to deep-sea basin environments, observed in a wide portion of the area. Most of the thrusts exposed in the area may indeed be interpreted as reactivated Jurassic extensional faults, or as reverse faults whose nucleation was controlled by the location of preexisting normal faults, as a result of positive inversion during crustal shortening and mountain building.

Application of ground penetrating radar for identification of washover deposits and other stratigraphic features: Assateague Island, MD

USGS Publications Warehouse

Zaremba, Nicholas; Smith, Christopher G.; Bernier, Julie C.; Forde, Arnell S.

2016-01-01

A combination of ground penetrating radar (GPR) data, core data, and aerial photographs were analyzed to better understand the evolution of two portions of Assateague Island, Maryland. The focus of the study was to investigate the applicability of using GPR data to image washover deposits in the stratigraphic record. High amplitude reflections observed in two shore-perpendicular GPR profiles were correlated to shallow (<1 m) lithologic contacts observed in sediment cores. At these contacts, deposits consisting primarily of quartz sand overlie sediments with organic matter that include degraded plant root or stem material. The underlying organic matter likely represents the vegetated portion of the barrier island that was buried by washover fans deposited during hurricanes Irene (2011) and Sandy (2012), as indicated in high-resolution aerial photographs. The GPR data were able to delineate the washover deposits from the underlying stratigraphic unit; however, the radar data did not resolve finer structures necessary to definitively differentiate washover facies from other sand-rich deposits (e.g., flood-tide deltas and dunes). Other GPR profiles contain reflections that likely correlate to geomorphic features like tidal channels and vegetated zones observed in historical aerial imagery. Burial of these features by overwash fluxes were observed in the aerial imagery and thus the resulting radar sequence is largely interpreted as washover deposits. Deeper, channel-like features that have been infilled were also observed in shore-parallel profiles and these features coincide with scour channels observed in the 1966 aerial photography. Additional sedimentological data are required to determine what role overwash played in the in-filling of these features.

Findings on rings and inner satellites of Saturn of Pioneer 11

NASA Astrophysics Data System (ADS)

van Allen, J. A.

1982-09-01

The introductory part of this paper gives a short account of the theory of absorption by planetary rings and satellites of energetic charged particles that are trapped in a planet's magnetic field and describes the observable consequences of such absorption processes. The previously published University of Iowa observations of absorption features during Pioneer 11's passage through Saturn's inner radiation belt on 1 September 1979 are critically reanalyzed and related to other evidence on rings and satellites inside 2.9 Saturn radii, especially that from the imaging system on Voyagers 1 and 2. It is found (a) that satellites 1979 S1, 1979 S2, and 1980 S3 are almost certainly identical; (b) that the evidence for 1979 S4 is weak to nonexistent; (c) that 1979 S5 and two other nearby absorption features and 1979 S6 and one other nearby absorption feature are probably caused by longitudinal and radial structure of Ring F and not by satellites; and (d) that absorption feature 1979 S3 at 169,200 + or - 600 km is identified with the optically observed Ring G.

Dark mammoth trunks in the merging galaxy NGC 1316 and a mechanism of cosmic double helices

NASA Astrophysics Data System (ADS)

Carlqvist, Per

2010-06-01

NGC 1316 is a giant, elliptical galaxy containing a complex network of dark, dust features. The morphology of these features has been examined in some detail using a Hubble Space Telescope, Advanced Camera for Surveys image. It is found that most of the features are constituted of long filaments. There also exist a great number of dark structures protruding inwards from the filaments. Many of these structures are strikingly similar to elephant trunks in H ii regions in the Milky Way Galaxy, although much larger. The structures, termed mammoth trunks, generally are filamentary and often have shapes resembling the letters V or Y. In some of the mammoth trunks the stem of the Y can be resolved into two or more filaments, many of which showing signs of being intertwined. A model of the mammoth trunks, related to a recent theory of elephant trunks, is proposed. Based on magnetized filaments, the model is capable of giving an account of the various shapes of the mammoth trunks observed, including the twined structures.

Uranus' Persistent Patterns and Features from High-SNR Imaging in 2012-2014

NASA Astrophysics Data System (ADS)

Fry, Patrick M.; Sromovsky, Lawrence A.; de Pater, Imke; Hammel, Heidi B.; Marcus, Phillip

2015-11-01

Since 2012, Uranus has been the subject of an observing campaign utilizing high signal-to-noise imaging techniques at Keck Observatory (Fry et al. 2012, Astron. J. 143, 150-161). High quality observing conditions on four observing runs of consecutive nights allowed longitudinally-complete coverage of the atmosphere over a period of two years (Sromovsky et al. 2015, Icarus 258, 192-223). Global mosaic maps made from images acquired on successive nights in August 2012, November 2012, August 2013, and August 2014, show persistent patterns, and six easily distinguished long-lived cloud features, which we were able to track for long periods that ranged from 5 months to over two years. Two at similar latitudes are associated with dark spots, and move with the atmospheric zonal flow close to the location of their associated dark spot instead of following the flow at the latitude of the bright features. These features retained their morphologies and drift rates in spite of several close interactions. A second pair of features at similar latitudes also survived several close approaches. Several of the long-lived features also exhibited equatorward drifts and latitudinal oscillations. Also persistent are a remarkable near-equatorial wave feature and global zonal band structure. We will present imagery, maps, and analyses of these phenomena.PMF and LAS acknowledge support from NASA Planetary Astronomy Program; PMF and LAS acknowledge funding and technical support from W. M. Keck Observatory. We thank those of Hawaiian ancestry on whose sacred mountain we are privileged to be guests. Without their generous hospitality none of our groundbased observations would have been possible.

Clavulanic acid production estimation based on color and structural features of Streptomyces clavuligerus bacteria using self-organizing map and genetic algorithm.

PubMed

Nurmohamadi, Maryam; Pourghassem, Hossein

2014-05-01

The utilization of antibiotics produced by Clavulanic acid (CA) is an increasing need in medicine and industry. Usually, the CA is created from the fermentation of Streptomycen Clavuligerus (SC) bacteria. Analysis of visual and morphological features of SC bacteria is an appropriate measure to estimate the growth of CA. In this paper, an automatic and fast CA production level estimation algorithm based on visual and structural features of SC bacteria instead of statistical methods and experimental evaluation by microbiologist is proposed. In this algorithm, structural features such as the number of newborn branches, thickness of hyphal and bacterial density and also color features such as acceptance color levels are extracted from the SC bacteria. Moreover, PH and biomass of the medium provided by microbiologists are considered as specified features. The level of CA production is estimated by using a new application of Self-Organizing Map (SOM), and a hybrid model of genetic algorithm with back propagation network (GA-BPN). The proposed algorithm is evaluated on four carbonic resources including malt, starch, wheat flour and glycerol that had used as different mediums of bacterial growth. Then, the obtained results are compared and evaluated with observation of specialist. Finally, the Relative Error (RE) for the SOM and GA-BPN are achieved 14.97% and 16.63%, respectively. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

A particle swarm optimized kernel-based clustering method for crop mapping from multi-temporal polarimetric L-band SAR observations

NASA Astrophysics Data System (ADS)

Tamiminia, Haifa; Homayouni, Saeid; McNairn, Heather; Safari, Abdoreza

2017-06-01

Polarimetric Synthetic Aperture Radar (PolSAR) data, thanks to their specific characteristics such as high resolution, weather and daylight independence, have become a valuable source of information for environment monitoring and management. The discrimination capability of observations acquired by these sensors can be used for land cover classification and mapping. The aim of this paper is to propose an optimized kernel-based C-means clustering algorithm for agriculture crop mapping from multi-temporal PolSAR data. Firstly, several polarimetric features are extracted from preprocessed data. These features are linear polarization intensities, and several statistical and physical based decompositions such as Cloude-Pottier, Freeman-Durden and Yamaguchi techniques. Then, the kernelized version of hard and fuzzy C-means clustering algorithms are applied to these polarimetric features in order to identify crop types. The kernel function, unlike the conventional partitioning clustering algorithms, simplifies the non-spherical and non-linearly patterns of data structure, to be clustered easily. In addition, in order to enhance the results, Particle Swarm Optimization (PSO) algorithm is used to tune the kernel parameters, cluster centers and to optimize features selection. The efficiency of this method was evaluated by using multi-temporal UAVSAR L-band images acquired over an agricultural area near Winnipeg, Manitoba, Canada, during June and July in 2012. The results demonstrate more accurate crop maps using the proposed method when compared to the classical approaches, (e.g. 12% improvement in general). In addition, when the optimization technique is used, greater improvement is observed in crop classification, e.g. 5% in overall. Furthermore, a strong relationship between Freeman-Durden volume scattering component, which is related to canopy structure, and phenological growth stages is observed.

Ultra-Widefield Steering-Based SD-OCT Imaging of the Retinal Periphery

PubMed Central

Choudhry, Netan; Golding, John; Manry, Matthew W.; Rao, Rajesh C.

2016-01-01

Objective To describe the spectral-domain optical coherence tomography (SD-OCT) features of peripheral retinal findings using an ultra-widefield (UWF) steering technique to image the retinal periphery. Design Observational study. Participants 68 patients (68 eyes) with 19 peripheral retinal features. Main Outcome Measures SD-OCT-based structural features. Methods Nineteen peripheral retinal features including: vortex vein, congenital hypertrophy of the retinal pigment epithelium (CHRPE), pars plana, ora serrata pearl, typical cystoid degeneration (TCD), cystic retinal tuft, meridional fold, lattice and cobblestone degeneration, retinal hole, retinal tear, rhegmatogenous retinal detachment (RRD), typical degenerative senile retinoschisis, peripheral laser coagulation scars, ora tooth, cryopexy scars (retinal tear and treated retinoblastoma scar), bone spicules, white without pressure, and peripheral drusen were identified by peripheral clinical examination. Near infrared (NIR) scanning laser ophthalmoscopy (SLO) images and SD-OCT of these entities were registered to UWF color photographs. Results SD-OCT resolved structural features of all peripheral findings. Dilated hyporeflective tubular structures within the choroid were observed in the vortex vein. Loss of retinal lamination, neural retinal attenuation, RPE loss or hypertrophy were seen in several entities including CHRPE, ora serrata pearl, TCD, cystic retinal tuft, meridional fold, lattice and cobblestone degenerations. Hyporeflective intraretinal spaces, indicating cystoid or schitic fluid, were seen in ora serrata pearl, ora tooth, TCD, cystic retinal tuft, meridional fold, retinal hole, and typical degenerative senile retinoschisis. The vitreoretinal interface, which often consisted of lamellae-like structures of the condensed cortical vitreous near or adherent to the neural retina, appeared clearly in most peripheral findings, confirming its association with many low-risk and vision-threatening pathologies such as lattice degeneration, meridional folds, retinal breaks, and RRDs. Conclusions UWF steering technique-based SD-OCT imaging of the retinal periphery is feasible with current commercially available devices, and provides detailed anatomical information of the peripheral retina, including benign and pathological entities, not previously imaged. This imaging technique may deepen our structural understanding of these entities, their potentially associated macular and systemic pathologies, and may influence decision-making in clinical practice, particularly in areas with teleretinal capabilities but poor access to retinal specialists. PMID:26992837

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sadjadi, Seyedabdolreza; Zhang, Yong; Kwok, Sun, E-mail: sunkwok@hku.hk

The 3.3 μ m unidentified infrared emission feature is commonly attributed to the C–H stretching band of aromatic molecules. Astronomical observations have shown that this feature is composed of two separate bands at 3.28 and 3.30 μ m, and the origin of these two bands is unclear. In this paper, we perform vibrational analyses based on quantum mechanical calculations of 153 organic molecules, including both pure aromatic molecules and molecules with mixed aromatic/olefinic/aliphatic hydridizations. We find that many of the C–H stretching vibrational modes in polycyclic aromatic hydrocarbon (PAH) molecules are coupled. Even considering the uncoupled modes only, the correlationmore » between the band intensity ratios and the structure of the PAH molecule is not observed, and the 3.28 and 3.30 μ m features cannot be directly interpreted in the PAH model. Based on these results, the possible aromatic, olefinic, and aliphatic origins of the 3.3 μ m feature are discussed. We suggest that the 3.28 μ m feature is assigned to aromatic C–H stretch whereas the 3.30 μ m feature is olefinic. From the ratio of these two features, the relative olefinic to aromatic content of the carrier can be determined.« less

Parenchymal texture analysis in digital mammography: robust texture feature identification and equivalence across devices.

PubMed

Keller, Brad M; Oustimov, Andrew; Wang, Yan; Chen, Jinbo; Acciavatti, Raymond J; Zheng, Yuanjie; Ray, Shonket; Gee, James C; Maidment, Andrew D A; Kontos, Despina

2015-04-01

An analytical framework is presented for evaluating the equivalence of parenchymal texture features across different full-field digital mammography (FFDM) systems using a physical breast phantom. Phantom images (FOR PROCESSING) are acquired from three FFDM systems using their automated exposure control setting. A panel of texture features, including gray-level histogram, co-occurrence, run length, and structural descriptors, are extracted. To identify features that are robust across imaging systems, a series of equivalence tests are performed on the feature distributions, in which the extent of their intersystem variation is compared to their intrasystem variation via the Hodges-Lehmann test statistic. Overall, histogram and structural features tend to be most robust across all systems, and certain features, such as edge enhancement, tend to be more robust to intergenerational differences between detectors of a single vendor than to intervendor differences. Texture features extracted from larger regions of interest (i.e., [Formula: see text]) and with a larger offset length (i.e., [Formula: see text]), when applicable, also appear to be more robust across imaging systems. This framework and observations from our experiments may benefit applications utilizing mammographic texture analysis on images acquired in multivendor settings, such as in multicenter studies of computer-aided detection and breast cancer risk assessment.

Atmospheric pressure chemical ionization studies of non-polar isomeric hydrocarbons using ion mobility spectrometry and mass spectrometry with different ionization techniques

NASA Technical Reports Server (NTRS)

Borsdorf, H.; Nazarov, E. G.; Eiceman, G. A.

2002-01-01

The ionization pathways were determined for sets of isomeric non-polar hydrocarbons (structural isomers, cis/trans isomers) using ion mobility spectrometry and mass spectrometry with different techniques of atmospheric pressure chemical ionization to assess the influence of structural features on ion formation. Depending on the structural features, different ions were observed using mass spectrometry. Unsaturated hydrocarbons formed mostly [M - 1]+ and [(M - 1)2H]+ ions while mainly [M - 3]+ and [(M - 3)H2O]+ ions were found for saturated cis/trans isomers using photoionization and 63Ni ionization. These ionization methods and corona discharge ionization were used for ion mobility measurements of these compounds. Different ions were detected for compounds with different structural features. 63Ni ionization and photoionization provide comparable ions for every set of isomers. The product ions formed can be clearly attributed to the structures identified. However, differences in relative abundance of product ions were found. Although corona discharge ionization permits the most sensitive detection of non-polar hydrocarbons, the spectra detected are complex and differ from those obtained with 63Ni ionization and photoionization. c. 2002 American Society for Mass Spectrometry.

Measurements of ion velocity separation and ionization in multi-species plasma shocks

NASA Astrophysics Data System (ADS)

Rinderknecht, Hans G.; Park, H.-S.; Ross, J. S.; Amendt, P. A.; Wilks, S. C.; Katz, J.; Hoffman, N. M.; Kagan, G.; Vold, E. L.; Keenan, B. D.; Simakov, A. N.; Chacón, L.

2018-05-01

The ion velocity structure of a strong collisional shock front in a plasma with multiple ion species is directly probed in laser-driven shock-tube experiments. Thomson scattering of a 263.25 nm probe beam is used to diagnose ion composition, temperature, and flow velocity in strong shocks ( M ˜6 ) propagating through low-density ( ρ˜0.1 mg/cc) plasmas composed of mixtures of hydrogen (98%) and neon (2%). Within the preheat region of the shock front, two velocity populations of ions are observed, a characteristic feature of strong plasma shocks. The ionization state of the Ne is observed to change within the shock front, demonstrating an ionization-timescale effect on the shock front structure. The forward-streaming proton feature is shown to be unexpectedly cool compared to predictions from ion Fokker-Planck simulations; the neon ionization gradient is evaluated as a possible cause.

Femtosecond stimulated Raman evidence for charge-transfer character in pentacene singlet fission.

PubMed

Hart, Stephanie M; Silva, W Ruchira; Frontiera, Renee R

2018-02-07

Singlet fission is a spin-allowed process in which an excited singlet state evolves into two triplet states. We use femtosecond stimulated Raman spectroscopy, an ultrafast vibrational technique, to follow the molecular structural evolution during singlet fission in order to determine the mechanism of this process. In crystalline pentacene, we observe the formation of an intermediate characterized by pairs of excited state peaks that are red- and blue-shifted relative to the ground state features. We hypothesize that these features arise from the formation of cationic and anionic species due to partial transfer of electron density from one pentacene molecule to a neighboring molecule. These observations provide experimental evidence for the role of states with significant charge-transfer character which facilitate the singlet fission process in pentacene. Our work both provides new insight into the singlet fission mechanism in pentacene and demonstrates the utility of structurally-sensitive time-resolved spectroscopic techniques in monitoring ultrafast processes.

Large stationary wave features appearing repeatedly at the cloud top of Venus

NASA Astrophysics Data System (ADS)

Kouyama, Toru; Imamura, Takeshi; Taguchi, Makoto; Fukuhara, Tetsuya; Sato, Takao M.; Hashimoto, George L.; Futaguchi, Masahiko; Takamura, Mao; Yamada, Takeru; Satoh, Takehiko; Nakamura, Masato; Akatsuki Science Team

2017-10-01

At the first observation sequence after Akatsuki’s Venus orbiter re-insertion (VOI-R) on December 7, 2015, Akatsuki revealed an existence of a large-scale “bow-shaped” feature staying at almost same geographic location (above Aphrodite Terra) at the cloud top level with the Longwave Infrared Camera (LIR) and Ultra Violet Imager (UVI). It expanded ~10,000 km from south to north and bended to downstream side of the super-rotation of Venus. A numerical calculation in Fukuhara et al. (2017) suggested that a gravity wave generated in the lower atmosphere can propagate upward to the cloud top and reproduce the observed bow-shape structure. Because the wave can transport momentum to the upper atmosphere which possibly decelerates the super-rotation, it is an interesting topic whether the stationary wave event is regular or just an occasional event. For more than three Venus years, or four Venus solar days, Akatsuki has observed huge stationary wave features in LIR images again and again since the VOI-R. It has been confirmed that four high-altitude regions, east and west part of Aphrodite Terra, Atra Regio, and Beta Regio, accompany with the large stationary features. All four regions are located in lower latitudes (< 30°), while no clear stationary feature has been confirmed above Maxwell Mountain, which is the highest mountain but located at a high latitude (60°), indicating geographical and latitudinal dependencies of the generation of the stationary waves. Akatsuki also reveals the stationary features can be considered as "daily" phenomena in Venus atmosphere. At every timing when the four high-altitude regions were passing afternoon region of Venus, huge stationary waves became clearer. On the other hand, when the high mountains were located around mid-night and morning, stationary features were much weaker than that in afternoon, or cannot be confirmed, indicating strong local time dependency of the appearance. Since lower latitude has more incident solar flux and afternoon area experiences longer solar heating than morning area, the geographical and the local time dependencies indicate that interaction between mountains and solar heating or solar fixed atmospheric structure may cause the large-scale features.

Hybrid metal organic scintillator materials system and particle detector

DOEpatents

Bauer, Christina A.; Allendorf, Mark D.; Doty, F. Patrick; Simmons, Blake A.

2011-07-26

We describe the preparation and characterization of two zinc hybrid luminescent structures based on the flexible and emissive linker molecule, trans-(4-R,4'-R') stilbene, where R and R' are mono- or poly-coordinating groups, which retain their luminescence within these solid materials. For example, reaction of trans-4,4'-stilbenedicarboxylic acid and zinc nitrate in the solvent dimethylformamide (DMF) yielded a dense 2-D network featuring zinc in both octahedral and tetrahedral coordination environments connected by trans-stilbene links. Similar reaction in diethylformamide (DEF) at higher temperatures resulted in a porous, 3-D framework structure consisting of two interpenetrating cubic lattices, each featuring basic to zinc carboxylate vertices joined by trans-stilbene, analogous to the isoreticular MOF (IRMOF) series. We demonstrate that the optical properties of both embodiments correlate directly with the local ligand environments observed in the crystal structures. We further demonstrate that these materials produce high luminescent response to proton radiation and high radiation tolerance relative to prior scintillators. These features can be used to create sophisticated scintillating detection sensors.

Evaluation of Waveform Structure Features on Time Domain Target Recognition under Cross Polarization

NASA Astrophysics Data System (ADS)

Selver, M. A.; Seçmen, M.; Zoral, E. Y.

2016-08-01

Classification of aircraft targets from scattered electromagnetic waves is a challenging application, which suffers from aspect angle dependency. In order to eliminate the adverse effects of aspect angle, various strategies were developed including the techniques that rely on extraction of several features and design of suitable classification systems to process them. Recently, a hierarchical method, which uses features that take advantage of waveform structure of the scattered signals, is introduced and shown to have effective results. However, this approach has been applied to the special cases that consider only a single planar component of electric field that cause no-cross polarization at the observation point. In this study, two small scale aircraft models, Boeing-747 and DC-10, are selected as the targets and various polarizations are used to analyse the cross-polarization effects on system performance of the aforementioned method. The results reveal the advantages and the shortcomings of using waveform structures in time-domain target identification.

Stormtime coupling of the ring current, plasmasphere, and topside ionosphere: Electromagnetic and plasma disturbances

NASA Astrophysics Data System (ADS)

Mishin, E. V.; Burke, W. J.

2005-07-01

We compare plasma and field disturbances observed in the ring current/plasmasphere overlap region and in the conjugate ionosphere during the magnetic storm of 5 June 1991. Data come from the Combined Release and Radiation Effects Satellite (CRRES) flying in a geostationary transfer orbit and three satellites of the Defense Meteorological Satellite Program (DMSP) series in Sun-synchronous polar orbits. In the region between ring current nose structures and the electron plasma sheet, CRRES detected wave-like features in local electric and magnetic fields, embedded in structured cold plasmas. Mapped to the ionosphere, these fields should reflect structuring within subauroral plasma streams (SAPS). Indeed, during the period of interest, DMSP F8, F9, and F10 satellites observed highly structured SAPS in the evening ionosphere at topside altitudes. They were collocated with precipitating ring current ions, enhanced fluxes of suprathermal electrons and ions, elevated electron temperatures, and irregular plasma density troughs. Overall, these events are similar to electromagnetic structures observed by DMSP satellites within SAPS during recent geomagnetic storms (Mishin et al., 2003, 2004). Their features can be explained in terms of Alfvén and fast magnetosonic perturbations. We developed a scenario for the formation of elevated electron temperatures at the equatorward side of the SAPS. It includes a lower-hybrid drift instability driven by diamagnetic currents, consistent with strong lower- and upper-hybrid plasma wave activity and intense fluxes of the low-energy electrons and ions near the ring current's inner edge.

Basal Ganglia Shape Abnormalities in the Unaffected Siblings of Schizophrenia Patients

PubMed Central

Mamah, Daniel; Harms, Michael P.; Wang, Lei; Barch, Deanna; Thompson, Paul; Kim, Jaeyun; Miller, Michael I.; Csernansky, John G.

2008-01-01

Objective Abnormalities of basal ganglia structure in schizophrenia have been attributed to the effects of antipsychotic drugs. Our aim was to test the hypothesis that abnormalities of basal ganglia structure are intrinsic features of schizophrenia, by assessing basal ganglia volume and shape in the unaffected siblings of schizophrenia subjects. Method The study involved 25 pairs of schizophrenia subjects and their unaffected siblings and 40 pairs of healthy controls and their siblings. Large deformation, high-dimensional brain mapping was used to obtain surface representations of the caudate, putamen, and globus pallidus. Surfaces were derived from transformations of anatomical templates and shapes were analyzed using reduced-dimensional measures of surface variability (i.e. principal components and canonical analysis). Canonical functions were derived using schizophrenia and control groups, and were then used to compare shapes in the sibling groups. To visualize shape differences, maps of the estimated surface displacement between groups were created. Results In the caudate, putamen and globus pallidus, the degree of shape abnormality observed in the siblings of the schizophrenia subjects was intermediate between the schizophrenia subjects and the controls. In the schizophrenia subjects, significant correlations were observed between measures of caudate, putamen and globus pallidus structure and the selected measures of lifetime psychopathology. Conclusions Attenuated abnormalities of basal ganglia structure are present in the unaffected siblings of schizophrenia subjects. This finding implies that basal ganglia structural abnormalities observed in subjects with schizophrenia are at least in part an intrinsic feature of the illness. PMID:18295189

Using local chromatin structure to improve CRISPR/Cas9 efficiency in zebrafish.

PubMed

Chen, Yunru; Zeng, Shiyang; Hu, Ruikun; Wang, Xiangxiu; Huang, Weilai; Liu, Jiangfang; Wang, Luying; Liu, Guifen; Cao, Ying; Zhang, Yong

2017-01-01

Although the CRISPR/Cas9 has been successfully applied in zebrafish, considerable variations in efficiency have been observed for different gRNAs. The workload and cost of zebrafish mutant screening is largely dependent on the mutation rate of injected embryos; therefore, selecting more effective gRNAs is especially important for zebrafish mutant construction. Besides the sequence features, local chromatin structures may have effects on CRISPR/Cas9 efficiency, which remain largely unexplored. In the only related study in zebrafish, nucleosome organization was not found to have an effect on CRISPR/Cas9 efficiency, which is inconsistent with recent studies in vitro and in mammalian cell lines. To understand the effects of local chromatin structure on CRISPR/Cas9 efficiency in zebrafish, we first determined that CRISPR/Cas9 introduced genome editing mainly before the dome stage. Based on this observation, we reanalyzed our published nucleosome organization profiles and generated chromatin accessibility profiles in the 256-cell and dome stages using ATAC-seq technology. Our study demonstrated that chromatin accessibility showed positive correlation with CRISPR/Cas9 efficiency, but we did not observe a clear correlation between nucleosome organization and CRISPR/Cas9 efficiency. We constructed an online database for zebrafish gRNA selection based on local chromatin structure features that could prove beneficial to zebrafish homozygous mutant construction via CRISPR/Cas9.

Anomalous High-Energy Waterfall-Like Electronic Structure in 5 d Transition Metal Oxide Sr2IrO4 with a Strong Spin-Orbit Coupling

PubMed Central

Liu, Yan; Yu, Li; Jia, Xiaowen; Zhao, Jianzhou; Weng, Hongming; Peng, Yingying; Chen, Chaoyu; Xie, Zhuojin; Mou, Daixiang; He, Junfeng; Liu, Xu; Feng, Ya; Yi, Hemian; Zhao, Lin; Liu, Guodong; He, Shaolong; Dong, Xiaoli; Zhang, Jun; Xu, Zuyan; Chen, Chuangtian; Cao, Gang; Dai, Xi; Fang, Zhong; Zhou, X. J.

2015-01-01

The low energy electronic structure of Sr2IrO4 has been well studied and understood in terms of an effective Jeff = 1/2 Mott insulator model. However, little work has been done in studying its high energy electronic behaviors. Here we report a new observation of the anomalous high energy electronic structure in Sr2IrO4. By taking high-resolution angle-resolved photoemission measurements on Sr2IrO4 over a wide energy range, we have revealed for the first time that the high energy electronic structures show unusual nearly-vertical bands that extend over a large energy range. Such anomalous high energy behaviors resemble the high energy waterfall features observed in the cuprate superconductors. While strong electron correlation plays an important role in producing high energy waterfall features in the cuprate superconductors, the revelation of the high energy anomalies in Sr2IrO4, which exhibits strong spin-orbit coupling and a moderate electron correlation, points to an unknown and novel route in generating exotic electronic excitations. PMID:26267653

Recovering hidden diagonal structures via non-negative matrix factorization with multiple constraints.

PubMed

Yang, Xi; Han, Guoqiang; Cai, Hongmin; Song, Yan

2017-03-31

Revealing data with intrinsically diagonal block structures is particularly useful for analyzing groups of highly correlated variables. Earlier researches based on non-negative matrix factorization (NMF) have been shown to be effective in representing such data by decomposing the observed data into two factors, where one factor is considered to be the feature and the other the expansion loading from a linear algebra perspective. If the data are sampled from multiple independent subspaces, the loading factor would possess a diagonal structure under an ideal matrix decomposition. However, the standard NMF method and its variants have not been reported to exploit this type of data via direct estimation. To address this issue, a non-negative matrix factorization with multiple constraints model is proposed in this paper. The constraints include an sparsity norm on the feature matrix and a total variational norm on each column of the loading matrix. The proposed model is shown to be capable of efficiently recovering diagonal block structures hidden in observed samples. An efficient numerical algorithm using the alternating direction method of multipliers model is proposed for optimizing the new model. Compared with several benchmark models, the proposed method performs robustly and effectively for simulated and real biological data.

Some recent experimental results related to nuclear chirality

NASA Astrophysics Data System (ADS)

Timár, J.; Kuti, I.; Sohler, D.; Starosta, K.; Koike, T.; Paul, E. S.

2014-09-01

Detailed band structures of three chiral-candidate nuclei, 134Pr, 132La and 103Rh have been studied. The aim of the study was twofold. First, to try to explore the reasons behind the contradiction between the theoretically predicted chirality in these nuclei and the recently observed fingerprints that suggest non-chiral interpretation for the previous chiral candidate band doublets. Second, to search for multiple chiral bands of different types in these nuclei. In 134Pr a new πh11/2vh11/2 band has been observed besides the previously known chiral-candidate πh11/2vh11/2 doublet. This new band and the yrare πh11/2vh11/2 band show the expected features of a chiral doublet structure. This fact combined with the observed similarity between the band structures of 134Pr and 132La suggests that chirality might exist in these nuclei. The detailed study of the 103Rh band structure resulted in the observation of two new chiral-doublet looking structures besides the previously known one. This is indicative of possible existence of multiple chiral doublet structure in this nucleus.

A decametric wavelength radio telescope for interplanetary scintillation observations

NASA Technical Reports Server (NTRS)

Cronyn, W. M.; Shawhan, S. D.

1975-01-01

A phased array, electrically steerable radio telescope (with a total collecting area of 18 acres), constructed for the purpose of remotely sensing electron density irregularity structure in the solar wind, is presented. The radio telescope is able to locate, map, and track large scale features of the solar wind, such as streams and blast waves, by monitoring a large grid of natural radio sources subject to rapid intensity fluctuation (interplanetary scintillation) caused by the irregularity structure. Observations verify the performance of the array, the receiver, and the scintillation signal processing circuitry of the telescope.

The use of radar and visual observations to characterize the surface structure of the planet Mercury

NASA Technical Reports Server (NTRS)

Clark, P. E.; Kobrick, M.; Jurgens, R. F.

1985-01-01

An analysis is conducted of available topographic profiles and scattering parameters derived from earth-based S- and X-band radar observations of Mercury, in order to determine the nature and origin of regional surface variations and structures that are typical of the planet. Attention is given to the proposal that intercrater plains on Mercury formed from extensive volcanic flooding during bombardment, so that most craters were formed on a partially molten surface and were thus obliterated, together with previously formed tectonic features.

Discrimination of artificial categories structured by family resemblances: a comparative study in people (Homo sapiens) and pigeons (Columba livia).

PubMed

Makino, Hiroshi; Jitsumori, Masako

2007-02-01

Adult humans (Homo sapiens) and pigeons (Columba livia) were trained to discriminate artificial categories that the authors created by mimicking 2 properties of natural categories. One was a family resemblance relationship: The highly variable exemplars, including those that did not have features in common, were structured by a similarity network with the features correlating to one another in each category. The other was a polymorphous rule: No single feature was essential for distinguishing the categories, and all the features overlapped between the categories. Pigeons learned the categories with ease and then showed a prototype effect in accord with the degrees of family resemblance for novel stimuli. Some evidence was also observed for interactive effects of learning of individual exemplars and feature frequencies. Humans had difficulty in learning the categories. The participants who learned the categories generally responded to novel stimuli in an all-or-none fashion on the basis of their acquired classification decision rules. The processes that underlie the classification performances of the 2 species are discussed.

Molecular interactions within the halophilic, thermophilic, and mesophilic prokaryotic ribosomal complexes: clues to environmental adaptation.

PubMed

Mallik, Saurav; Kundu, Sudip

2015-01-01

Using the available crystal structures of 50S ribosomal subunits from three prokaryotic species: Escherichia coli (mesophilic), Thermus thermophilus (thermophilic), and Haloarcula marismortui (halophilic), we have analyzed different structural features of ribosomal RNAs (rRNAs), proteins, and of their interfaces. We have correlated these structural features with the environmental adaptation strategies of the corresponding species. While dense intra-rRNA packing is observed in thermophilic, loose intra-rRNA packing is observed in halophilic (both compared to mesophilic). Interestingly, protein-rRNA interfaces of both the extremophiles are densely packed compared to that of the mesophilic. The intersubunit bridge regions are almost devoid of cavities, probably ensuring the proper formation of each bridge (by not allowing any loosely packed region nearby). During rRNA binding, the ribosomal proteins experience some structural transitions. Here, we have analyzed the intrinsically disordered and ordered regions of the ribosomal proteins, which are subjected to such transitions. The intrinsically disordered and disorder-to-order transition sites of the thermophilic and mesophilic ribosomal proteins are simultaneously (i) highly conserved and (ii) slowly evolving compared to rest of the protein structure. Although high conservation is observed at such sites of halophilic ribosomal proteins, but slow rate of evolution is absent. Such differences between thermophilic, mesophilic, and halophilic can be explained from their environmental adaptation strategy. Interestingly, a universal biophysical principle evident by a linear relationship between the free energy of interface formation, interface area, and structural changes of r-proteins during assembly is always maintained, irrespective of the environmental conditions.

Sutures and an Anomalous Deep Lithospheric Electrical Resistor in the Southeastern United States as Revealed by EarthScope Magnetotelluric Data

NASA Astrophysics Data System (ADS)

Murphy, B. S.; Egbert, G. D.

2016-12-01

We use newly acquired long-period magnetotelluric data to examine lithospheric structure beneath the modern Southern Appalachian Mountains and the adjacent Piedmont. The New York-Alabama Lineament is clearly visible both in inverse models and in the data themselves as a major Appalachian-parallel, mid- to lower-crustal conductive feature. This observation supports geologically-based interpretations of the NY-AL Lineament as a major Grenville suture. We also discern several other suture zones in our inverse models, including the Central Piedmont Suture. Interestingly, we do not observe any geoelectric signature of the Suwannee Suture. Most strikingly, we find a zone of exceptionally high resistivity (>1000 μm) that extends to a depth of more than 200 km beneath the modern Piedmont. This resistive block abuts more conductive lithosphere ( 100 μm, as would be expected for Phanerozoic lithosphere) to the northwest. The boundary between these two distinct domains coincides with the modern Appalachian topographic escarpment to within our resolution. The high resistivity values would seem to require completely dry, highly depleted lithosphere at anomalously cold temperatures; however, corresponding seismically fast lithospheric mantle that would be expected for such a structure has not been observed in any previous studies. The exact nature of this feature therefore remains uncertain at present. Regardless, as it is a persistent feature in inversions and it is also readily apparent in the impedance data, this geoelectric structure likely holds important implications for the past, present, and future tectonic evolution of the Southeastern United States.

Imposed, ordered dust structures and other plasma features in a strongly magnetized plasma

NASA Astrophysics Data System (ADS)

Thomas, Edward; Leblanc, Spencer; Lynch, Brian; Konopka, Uwe; Merlino, Robert; Rosenberg, Marlene

2015-11-01

The Magnetized Dusty Plasma Experiment (MDPX) device has been in operation for just over one year. In that time, the MDPX device has been operating using a uniform magnetic field configuration up to 3.0 Tesla and has successfully produced plasmas and dusty plasmas at high magnetic fields. In these experimental studies, we have made observations of a new type of imposed, ordered structure in a dusty plasma at magnetic fields above 1 T. These dusty plasma structures are shown to scale inversely with neutral pressure and are shown to reflect the spatial structure of a wire mesh placed in the plasma. Additionally, recent measurements have been made that give insights into the effective potential that establishes the ordered structures in the plasma. In this presentation, we report on details of the imposed, ordered dusty plasma structure as well as filamentary features that also appear in the plasma and modify the confinement of the dusty plasma. This work is supported with funding from the NSF and Department of Energy.

MULTI-WAVELENGTH POLARIMETRY AND SPECTRAL STUDY OF THE M87 JET DURING 2002–2008

DOE Office of Scientific and Technical Information (OSTI.GOV)

Avachat, Sayali S.; Perlman, Eric S.; Adams, Steven C.

We present a multi-wavelength polarimetric and spectral study of the M87 jet obtained at sub-arcsecond resolution between 2002 and 2008. The observations include multi-band archival VLA polarimetry data sets along with Hubble Space Telescope ( HST ) imaging polarimetry. These observations have better angular resolution than previous work by factors of 2–3 and in addition, allow us to explore the time domain. These observations envelop the huge flare in HST-1 located 0.″86 from the nucleus. The increased resolution enables us to view more structure in each knot, showing several resolved sub-components. We also see apparent helical structure in the polarizationmore » vectors in several knots, with polarization vectors turning either clockwise or counterclockwise near the flux maxima in various places as well as showing filamentary undulations. Some of these characteristics are correlated with flux and polarization maxima while others are not. We also examine the total flux and fractional polarization and look for changes in both radio and optical since the observations of Perlman et al. (1999) and test them against various models based on shocks and instabilities in the jet. Our results are broadly consistent with previous spine-sheath models and recollimation shock models; however, they require additional combinations of features to explain the observed complexity, e.g., shearing of magnetic field lines near the jet surface and compression of the toroidal component near shocks. In particular, in many regions we find apparently helical features both in total flux and polarization. We discuss the physical interpretation of these features.« less

Preprocessing Structured Clinical Data for Predictive Modeling and Decision Support

PubMed Central

Oliveira, Mónica Duarte; Janela, Filipe; Martins, Henrique M. G.

2016-01-01

Summary Background EHR systems have high potential to improve healthcare delivery and management. Although structured EHR data generates information in machine-readable formats, their use for decision support still poses technical challenges for researchers due to the need to preprocess and convert data into a matrix format. During our research, we observed that clinical informatics literature does not provide guidance for researchers on how to build this matrix while avoiding potential pitfalls. Objectives This article aims to provide researchers a roadmap of the main technical challenges of preprocessing structured EHR data and possible strategies to overcome them. Methods Along standard data processing stages – extracting database entries, defining features, processing data, assessing feature values and integrating data elements, within an EDPAI framework –, we identified the main challenges faced by researchers and reflect on how to address those challenges based on lessons learned from our research experience and on best practices from related literature. We highlight the main potential sources of error, present strategies to approach those challenges and discuss implications of these strategies. Results Following the EDPAI framework, researchers face five key challenges: (1) gathering and integrating data, (2) identifying and handling different feature types, (3) combining features to handle redundancy and granularity, (4) addressing data missingness, and (5) handling multiple feature values. Strategies to address these challenges include: cross-checking identifiers for robust data retrieval and integration; applying clinical knowledge in identifying feature types, in addressing redundancy and granularity, and in accommodating multiple feature values; and investigating missing patterns adequately. Conclusions This article contributes to literature by providing a roadmap to inform structured EHR data preprocessing. It may advise researchers on potential pitfalls and implications of methodological decisions in handling structured data, so as to avoid biases and help realize the benefits of the secondary use of EHR data. PMID:27924347

Degeneracy between nonadiabatic dark energy models and Λ CDM : Integrated Sachs-Wolfe effect and the cross correlation of CMB with galaxy clustering data

NASA Astrophysics Data System (ADS)

Velten, Hermano; Fazolo, Raquel Emy; von Marttens, Rodrigo; Gomes, Syrios

2018-05-01

As recently pointed out in [Phys. Rev. D 96, 083502 (2017), 10.1103/PhysRevD.96.083502] the evolution of the linear matter perturbations in nonadiabatic dynamical dark energy models is almost indistinguishable (quasidegenerated) to the standard Λ CDM scenario. In this work we extend this analysis to CMB observables in particular the integrated Sachs-Wolfe effect and its cross-correlation with large scale structure. We find that this feature persists for such CMB related observable reinforcing that new probes and analysis are necessary to reveal the nonadiabatic features in the dark energy sector.

Vibration-based damage detection in a concrete beam under temperature variations using AR models and state-space approaches

NASA Astrophysics Data System (ADS)

Clément, A.; Laurens, S.

2011-07-01

The Structural Health Monitoring of civil structures subjected to ambient vibrations is very challenging. Indeed, the variations of environmental conditions and the difficulty to characterize the excitation make the damage detection a hard task. Auto-regressive (AR) models coefficients are often used as damage sensitive feature. The presented work proposes a comparison of the AR approach with a state-space feature formed by the Jacobian matrix of the dynamical process. Since the detection of damage can be formulated as a novelty detection problem, Mahalanobis distance is applied to track new points from an undamaged reference collection of feature vectors. Data from a concrete beam subjected to temperature variations and damaged by several static loading are analyzed. It is observed that the damage sensitive features are effectively sensitive to temperature variations. However, the use of the Mahalanobis distance makes possible the detection of cracking with both of them. Early damage (before cracking) is only revealed by the AR coefficients with a good sensibility.

Nano-textured high sensitivity ion sensitive field effect transistors

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hajmirzaheydarali, M.; Sadeghipari, M.; Akbari, M.

2016-02-07

Nano-textured gate engineered ion sensitive field effect transistors (ISFETs), suitable for high sensitivity pH sensors, have been realized. Utilizing a mask-less deep reactive ion etching results in ultra-fine poly-Si features on the gate of ISFET devices where spacing of the order of 10 nm and less is achieved. Incorporation of these nano-sized features on the gate is responsible for high sensitivities up to 400 mV/pH in contrast to conventional planar structures. The fabrication process for this transistor is inexpensive, and it is fully compatible with standard complementary metal oxide semiconductor fabrication procedure. A theoretical modeling has also been presented to predict themore » extension of the diffuse layer into the electrolyte solution for highly featured structures and to correlate this extension with the high sensitivity of the device. The observed ultra-fine features by means of scanning electron microscopy and transmission electron microscopy tools corroborate the theoretical prediction.« less

Earth observations during STS-58

NASA Image and Video Library

1993-10-22

STS058-88-017 (18 Oct-1 Nov 1993) --- The eye-catching "bullseye" of the Richat Structure adds interest to the barren Gres de Chinguetti Plateau in central Mauretania, northwest Africa. It represents domally uplifted, layered (sedimentary) rocks that have been eroded by water and wind into the present shape. Desert sands have invaded the feature from the south. The origin of the structure is unknown. It is not an impact structure, because field work showed that strata are undisturbed and flat-lying in the middle of the feature, and no shock-altered rock could be found. There is no evidence for a salt dome or shale diapir, nor is there any geophysical evidence for an underlying dome of dense igneous rock having about the same density as the sedimentary layers.

Structural geologic interpretations from radar imagery

USGS Publications Warehouse

Reeves, Robert G.

1969-01-01

Certain structural geologic features may be more readily recognized on sidelooking airborne radar (SLAR) images than on conventional aerial photographs, other remote sensor imagery, or by ground observations. SLAR systems look obliquely to one or both sides and their images resemble aerial photographs taken at low sun angle with the sun directly behind the camera. They differ from air photos in geometry, resolution, and information content. Radar operates at much lower frequencies than the human eye, camera, or infrared sensors, and thus "sees" differently. The lower frequency enables it to penetrate most clouds and some precipitation, haze, dust, and some vegetation. Radar provides its own illumination, which can be closely controlled in intensity and frequency. It is narrow band, or essentially monochromatic. Low relief and subdued features are accentuated when viewed from the proper direction. Runs over the same area in significantly different directions (more than 45° from each other), show that images taken in one direction may emphasize features that are not emphasized on those taken in the other direction; optimum direction is determined by those features which need to be emphasized for study purposes. Lineaments interpreted as faults stand out on radar imagery of central and western Nevada; folded sedimentary rocks cut by faults can be clearly seen on radar imagery of northern Alabama. In these areas, certain structural and stratigraphic features are more pronounced on radar images than on conventional photographs; thus radar imagery materially aids structural interpretation.

Orientale and Caloris. [lunar basins with similar structural features

NASA Technical Reports Server (NTRS)

Mccauley, J. F.

1977-01-01

Based on revised stratigraphy, structural interpretation, explosion-crater data, and a genetic model for Orientale, it is suggested that Orientale and Caloris have much in common. It is noted that: (1) although the basin fill in Caloris is different from that seen in Orientale, the materials between the most prominent scarp and the weakly-developed outer scarp may be degraded equivalents of the massifs and knobs associated with the Montes Rook, (2) the Montes Rook and the main Caloris scarp have similar stratigraphic and structural features, (3) the lineated ejecta derived from shallower horizons are found near and beyond the weakly-developed outer Caloris scarp which is the counterpart of the Orientale scarp, (4) a well developed field of secondary craters is observed beyond 1 basin diameter at Caloris, (5) the observed textural differences between the material around the main Caloris scarp and the lineated material beyond suggest that Mercury is layered and that Caloris crater excavated coherent materials from one or more of these layers at depth, and (6) the difference in spacing between the Caloris rings is not related to internal layering effects.

The extinction and dust-to-gas structure of the planetary nebula NGC 7009 observed with MUSE

NASA Astrophysics Data System (ADS)

Walsh, J. R.; Monreal-Ibero, A.; Barlow, M. J.; Ueta, T.; Wesson, R.; Zijlstra, A. A.

2016-04-01

Context. Dust plays a significant role in planetary nebulae. Dust ejected with the gas in the asymptotic giant branch (AGB) phase is subject to the harsh environment of the planetary nebula (PN) while the star is evolving towards a white dwarf. Dust surviving the PN phase contributes to the dust content of the interstellar medium. Aims: The morphology of the internal dust extinction has been mapped for the first time in a PN, the bright nearby Galactic nebula NGC 7009. The morphologies of the gas, dust extinction and dust-to-gas ratio are compared to the structural features of the nebula. Methods: Emission line maps in H Balmer and Paschen lines were formed from analysis of MUSE cubes of NGC 7009 observed during science verification of the instrument. The measured electron temperature and density from the same cube were employed to predict the theoretical H line ratios and derive the extinction distribution across the nebula. After correction for the interstellar extinction to NGC 7009, the internal AV/NH has been mapped for the first time in a PN. Results: The extinction map of NGC 7009 has considerable structure, broadly corresponding to the morphological features of the nebula. The dust-to-gas ratio, AV/NH, increases from 0.7 times the interstellar value to >5 times from the centre towards the periphery of the ionized nebula. The integrated AV/NH is about 2× the mean ISM value. A large-scale feature in the extinction map is a wave, consisting of a crest and trough, at the rim of the inner shell. The nature of this feature is investigated and instrumental and physical causes considered; no convincing mechanisms were identified to produce this feature, other than AGB mass loss variations. Conclusions: Extinction mapping from H emission line imaging of PNe with MUSE provides a powerful tool for revealing the properties of internal dust and the dust-to-gas ratio. Based on observations collected at the European Organisation for Astronomical Research in the Southern Hemisphere under ESO programme 060.A-9347(A).

Observations of Scour and Transport at Coastal Structures from the 2011 Tohoku Tsunami - Implications for Flow in Natural Terrain

NASA Astrophysics Data System (ADS)

Petroff, C. M.

2011-12-01

Before the March 11, 2011 Tohoku tsunami, many communities along the Japan coast had shore protection barriers, some designed specifically to provide protection from tsunamis and others for typhoon and storm surge protection. A vast number of these structures were overtopped, damaged or destroyed by the high inundation and currents generated in the tsunami. Observations are presented about scour features at man-made coastal structures in the Tohoku region as well as the hydraulic transport of debris from these structures. Along with providing lessons for structure design and maintenance, these observations have implications for hydraulic transport in natural terrain, not only at hard points such as rock outcrops but also at other features such as river mouths, barrier islands and coastal dunes. As an example, Photo 1 shows the overtopping flow at the seawall at Noda, in the Iwate prefecture. From the point of view of hydraulics the type of flow seen in the photo is more like that at an in-line weir or spillway than the wave conditions for which the structure was designed. On the lee or downstream side of such structures, the flow is supercritical resulting in a supercritical to subcritical transition near the landward toe of the seawall. High flow velocities along with increased pore pressure and overturning flow create very deep scour in these locations Such as the zone clearly seen in Photo 2 behind the seawall at the Sendai airport. It is anticipated that similar hydraulic conditions would occur for flow over a high coastal dune ridge where the ridge would act as a flow control point and locally high velocities on the landward side of the ridge would result in high erosion and scour. Other examples are given.

Emergence of structural patterns out of synchronization in networks with competitive interactions

NASA Astrophysics Data System (ADS)

Assenza, Salvatore; Gutiérrez, Ricardo; Gómez-Gardeñes, Jesús; Latora, Vito; Boccaletti, Stefano

2011-09-01

Synchronization is a collective phenomenon occurring in systems of interacting units, and is ubiquitous in nature, society and technology. Recent studies have enlightened the important role played by the interaction topology on the emergence of synchronized states. However, most of these studies neglect that real world systems change their interaction patterns in time. Here, we analyze synchronization features in networks in which structural and dynamical features co-evolve. The feedback of the node dynamics on the interaction pattern is ruled by the competition of two mechanisms: homophily (reinforcing those interactions with other correlated units in the graph) and homeostasis (preserving the value of the input strength received by each unit). The competition between these two adaptive principles leads to the emergence of key structural properties observed in real world networks, such as modular and scale-free structures, together with a striking enhancement of local synchronization in systems with no global order.

The vanishing cryovolcanoes of Ceres

USGS Publications Warehouse

Sori, Michael M.; Byrne, Shane; Bland, Michael T.; Bramson, Ali; Ermakov, Anton; Hamilton, Christoper; Otto, Katharina; Ruesch, Ottaviano; Russell, Christopher

2017-01-01

Ahuna Mons is a 4 km tall mountain on Ceres interpreted as a geologically young cryovolcanic dome. Other possible cryovolcanic features are more ambiguous, implying that cryovolcanism is only a recent phenomenon or that other cryovolcanic structures have been modified beyond easy identification. We test the hypothesis that Cerean cryovolcanic domes viscously relax, precluding ancient domes from recognition. We use numerical models to predict flow velocities of Ahuna Mons to be 10–500 m/Myr, depending upon assumptions about ice content, rheology, grain size, and thermal parameters. Slower flow rates in this range are sufficiently fast to induce extensive relaxation of cryovolcanic structures over 108–109 years, but gradual enough for Ahuna Mons to remain identifiable today. Positive topographic features, including a tholus underlying Ahuna Mons, may represent relaxed cryovolcanic structures. A composition for Ahuna Mons of >40% ice explains the observed distribution of cryovolcanic structures because viscous relaxation renders old cryovolcanoes unrecognizable.

Structural Features of the Western Taiwan Foreland Basin in the Eastern Taiwan Strait since Late Miocene

NASA Astrophysics Data System (ADS)

WANG, J. H.; Liu, C. S.; Chang, J. H.; Yang, E. Y.

2017-12-01

The western Taiwan Foreland Basin lies on the eastern part of Taiwan Strait. The structures in this region are dominated by crustal stretch and a series of flexural normal faults have been developed since Late Miocene owing to the flexural of Eurasia Plate. Through deciphering multi-channel seismic data and drilling data, these flexural features are observed in the offshore Changhua coastal area. The flexure normal faults are important features to realize structural activity in the western Taiwan Foreland Basin. Yang et al. (2016) mention that the reactivated normal faults are found north of the Zhushuixi estuary. It should be a significant issue to decipher whether these faults are still active. In this study, we have analyzed all the available seismic reflections profiles in the central part of the Taiwan Strait, and have observed many pre-Pliocene normal faults that are mainly distributed in the middle of the Taiwan Strait to Changyun Rise, and we tentatively suggest that the formation of these faults may be associated with the formation of the foreland basal unconformity. Furthermore, we will map the distribution of these normal faults and examine whether the reactivated normal faults have extended to south of the Zhushuixi estuary. Finally, we discuss the relation between the reactivated normal faults in the Taiwan Strait and those faults onshore. Key words: Multichannel seismic reflection profile, Taiwan Strait, Foreland basin, normal fault.

Label-free visualization of ultrastructural features of artificial synapses via cryo-EM.

PubMed

Gopalakrishnan, Gopakumar; Yam, Patricia T; Madwar, Carolin; Bostina, Mihnea; Rouiller, Isabelle; Colman, David R; Lennox, R Bruce

2011-12-21

The ultrastructural details of presynapses formed between artificial substrates of submicrometer silica beads and hippocampal neurons are visualized via cryo-electron microscopy (cryo-EM). The silica beads are derivatized by poly-d-lysine or lipid bilayers. Molecular features known to exist at presynapses are clearly present at these artificial synapses, as visualized by cryo-EM. Key synaptic features such as the membrane contact area at synaptic junctions, the presynaptic bouton containing presynaptic vesicles, as well as microtubular structures can be identified. This is the first report of the direct, label-free observation of ultrastructural details of artificial synapses.

Evolution of Precipitation Structure During the November DYNAMO MJO Event: Cloud-Resolving Model Intercomparison and Cross Validation Using Radar Observations

NASA Astrophysics Data System (ADS)

Li, Xiaowen; Janiga, Matthew A.; Wang, Shuguang; Tao, Wei-Kuo; Rowe, Angela; Xu, Weixin; Liu, Chuntao; Matsui, Toshihisa; Zhang, Chidong

2018-04-01

Evolution of precipitation structures are simulated and compared with radar observations for the November Madden-Julian Oscillation (MJO) event during the DYNAmics of the MJO (DYNAMO) field campaign. Three ground-based, ship-borne, and spaceborne precipitation radars and three cloud-resolving models (CRMs) driven by observed large-scale forcing are used to study precipitation structures at different locations over the central equatorial Indian Ocean. Convective strength is represented by 0-dBZ echo-top heights, and convective organization by contiguous 17-dBZ areas. The multi-radar and multi-model framework allows for more stringent model validations. The emphasis is on testing models' ability to simulate subtle differences observed at different radar sites when the MJO event passed through. The results show that CRMs forced by site-specific large-scale forcing can reproduce not only common features in cloud populations but also subtle variations observed by different radars. The comparisons also revealed common deficiencies in CRM simulations where they underestimate radar echo-top heights for the strongest convection within large, organized precipitation features. Cross validations with multiple radars and models also enable quantitative comparisons in CRM sensitivity studies using different large-scale forcing, microphysical schemes and parameters, resolutions, and domain sizes. In terms of radar echo-top height temporal variations, many model sensitivity tests have better correlations than radar/model comparisons, indicating robustness in model performance on this aspect. It is further shown that well-validated model simulations could be used to constrain uncertainties in observed echo-top heights when the low-resolution surveillance scanning strategy is used.

The Tempe volcanic province of Mars and comparisons with the Snake River Plains of Idaho

NASA Technical Reports Server (NTRS)

Plescia, J. B.

1981-01-01

The Tempe volcanic region of Mars, a relatively low plain of probable basaltic flood lava affinity, is shown to be comparable in many respects to features of the Snake River Plains of Idaho, including both scale and type of features observed. Superimposed upon the Tempe plain are a variety of features that appear structurally controlled, along an orientation of N60 deg E; comprising low shields, irregular hills that may be silicic domes, and possible composite cones. The Tempe/Snake River match is held to be the first in which direct comparison can be made between Martian and terrestrial geologic-geomorphic features without encountering problems of scale.

Convection flow structure in the central polar cap

NASA Astrophysics Data System (ADS)

Bristow, W. A.

2017-12-01

A previous study of spatially averaged flow velocity in the central polar cap [Bristow et al., 2015] observed under steady IMF conditions found that it was extremely rare for the average to exceed 850 m/s (less than 0.2 % of the time). Anecdotally, however it is not uncommon to observe line-of-sight velocities in excess of 100 m/s in the McMurdo radar field of view directly over the magnetic pole. This discrepancy motivated this study, which examines the conditions under which high-velocity flows are observed at latitudes greater than 80° magnetic latitude. It was found that highly structured flows are common in the central polar cap, which leads to the flow within regions to have significant deviation from the average. In addition, the high-speed flow regions are usually directed away from the earth-sun line. No specific set of driving conditions was identified to be associated with high-speed flows. The study did conclude that 1)Polar cap velocities are generally highly structured. 2)Flow patterns typically illustrate narrow channels, vortical flow regions, and propagating features. 3) Persistent waves are a regular occurrence. 3)Features are observed to propagate from day side to night side, and from night side to day side.. 4)Convection often exhibits significant difference between the two hemispheres. And 5)About 10% of the time the velocity somewhere in the cap exceeds 1 Km/s The presentation will conclude with a discussion of the physical reasons for the flow structure. Bristow, W. A., E. Amata, J. Spaleta, and M. F. Marcucci (2015), Observations of the relationship between ionospheric central polar cap and dayside throat convection velocities, and solar wind/IMF driving, J. Geophys. Res. Space Physics, 120, doi:10.1002/2015JA021199.

The structure of the inner arcsecond of R Aquarii observed with the Hubble Space Telescope

NASA Technical Reports Server (NTRS)

Burgarella, Denis; Paresce, Francesco

1992-01-01

The inner arcsec of R Aquarii has been observed with the Faint Object Camera on the Hubble Space Telescope. A simple and reliable linear deconvolution method is used to resolve the two features, designated C1 and C2 from radio observations, into several condensations. C1 is composed of four objects, designated C1a, C1b located at 0.099 arcsec from C1a, C3 at 0.162 arcsec from C1a, and C4 at 0.137 arcsec from C1a. The source C3, detected at 2 cm in the radio and in H-alpha, might be the V = 6-11 Mira variable. The nature of feature C4 is still unknown. Features C1a and C1b have not been resolved by another instrument, and it might be possible that the hot star is one of the two or a nearby nondetected object.

Observations of the 51.8 micron (O III) emission line in Orion

NASA Technical Reports Server (NTRS)

Melnick, G.; Gull, G. E.; Harwit, M.; Ward, D. B.

1978-01-01

The 51.8 micron fine structure transition P2:3P2 3P1 for doubly ionized oxygen was observed in the Orion nebula. The observed line strength is of 5 plus or minus 3 times 10 to the minus 15th power watt/sq cm is in good agreement with theoretical predictions. Observations are consistent with the newly predicted 51.8 micron line position. The line lies close to an atmospheric water vapor feature at 51.7 micron, but is sufficiently distant so that corrections for this feature are straightforward. Observations of the 51.8 (O III) line are particularly important since the previously discovered 88 micron line from the same ion also is strong. This pair of lines should, therefore, yield new data about densities in observed H II regions; or else, if density data already are available from radio or other observations, the lines can be used to determine the differential dust absorption between 52 and 88 micron in front of heavily obscured regions.

Exploring the Solar System with Stellar Occultations

NASA Technical Reports Server (NTRS)

Elliot, J. L.; Dunham, E. W.

1984-01-01

By recording the light intensity as a function of time when a planet occults a relatively bright star, the thermal structure of the upper atmosphere of the planet can be probed. The main feature of stellar occultation observations is their high spatial resolution, typically several thousand times better than the resolution achievable with ground-based imaging. Five stellar occultations have been observed. The main results of these observations are summarized. Stellar occultations have been observed on Uranus, Mars, Pallas, Neptune and the Jovian Ring.

Karstic slope "breathing": morpho-structural influence and hazard implications

NASA Astrophysics Data System (ADS)

Devoti, Roberto; Falcucci, Emanuela; Gori, Stefano; Eliana Poli, Maria; Zanferrari, Adriano; Braitenberg, Carla; Fabris, Paolo; Grillo, Barbara; Zuliani, David

2016-04-01

The study refers to the active slope deformation detected by GPS and tiltmeter stations in the Cansiglio karstic plateau located in the western Carnic Prealps (NE Italy). The observed transient deformation clearly correlates with the rainfall, so that the southernmost border of the Plateau reacts instantly to heavy rains displaying a "back and forth" deformation up to a few centimeters wide, with different time constants, demonstrating a response to different catchment volumes. We carried out a field survey along the southern Cansiglio slope, to achieve structural characterization of the relief and to verify the possible relation between structural features and the peculiar geomorphological setting dominated by widespread karstic features. The Cansiglio plateau develops on the frontal ramp anticline of the Cansiglio thrust, an about ENE-WSW trending, SSE-verging, low angle thrust, belonging to the Neogene-Quaternary front of the eastern Southern Alps. The Cansiglio thrust outcrops at the base of the Cansiglio plateau, where it overlaps the Mesozoic carbonates on the Miocene-Quaternary terrigenous succession. All along its length cataclastic limestone largely outcrop. The Cansiglio thrust is bordered by two transfer zones probably inherited from the Mesozoic paleogeography: the Caneva fault in the west and the Col Longone fault in the east. The carbonatic massif is also characterized by a series of about northward steeply dipping reverse minor faults and a set of subvertical joints parallel to the axes of the Cansiglio anticline. Other NNW-SSE and NNE-SSW conjugate faults and fractures perpendicular to the Cansiglio southern slope are also identified. This structural setting affect pervasively the whole slope and may determine centimetre- to metre-scale rock prisms. Interestingly, along the topmost portion of the slope, some dolines and swallow holes show an incipient coalescence, that trends parallel to the massif front and to the deformation zones related to the reverse fault. Such a dolines alignment forms a ridge parallel elongated trench, about 4 km long, which is a typical morpho-structural feature of slopes undergoing large scale gravitational instability (deep seated gravitational slope deformations). The trench is interrupted towards the NE by several coalescent and slide scarps. Such geomorphic evidence testifies to the occurrence of landslides events (mainly rockslides and rock falls) that sourced from the top portion of the slope, as local collapses of the sector affected by the trench. Our observations, as a whole, suggest that morpho-structural framework of the Cansiglio south-eastern slope is highly influenced by tectonic features related to the complex tectonic deformation. The structural setting is locally favoring the nucleation of karstic landforms (dolines, swallow holes and ipokarstic features). Moreover, the presence of widespread tectonic features lead gravitational instability affecting the slope, linked to the high local relief of the mountain front, may trigger collapse of sectors of the slope in rock falls phenomena. In this perspective, therefore, the continuous "back and forth" movements of the slope observed by GPS time series analysis induced by rainfall may progressively weaken the slope and render it prone to landsliding.

A Recollimation Shock in a Stationary Jet Feature with Limb-brightening in the Gamma-Ray-emitting Narrow-line Seyfert 1 Galaxy 1H 0323+342

NASA Astrophysics Data System (ADS)

Doi, Akihiro; Hada, Kazuhiro; Kino, Motoki; Wajima, Kiyoaki; Nakahara, Satomi

2018-04-01

We report the discovery of a local convergence of a jet cross section in the quasi-stationary jet feature in the γ-ray-emitting narrow-line Seyfert 1 galaxy (NLS1) 1H 0323+342. The convergence site is located at ∼7 mas (corresponding to the order of 100 pc in deprojection) from the central engine. We also found limb-brightened jet structures at both the upstream and downstream of the convergence site. We propose that the quasi-stationary feature showing the jet convergence and limb-brightening occurs as a consequence of recollimation shock in the relativistic jets. The quasi-stationary feature is one of the possible γ-ray-emitting sites in this NLS1, in analogy with the HST-1 complex in the M87 jet. Monitoring observations have revealed that superluminal components passed through the convergence site and the peak intensity of the quasi-stationary feature, which showed apparent coincidences with the timing of observed γ-ray activities.

Measuring the X-shaped structures in edge-on galaxies

NASA Astrophysics Data System (ADS)

Savchenko, S. S.; Sotnikova, N. Ya.; Mosenkov, A. V.; Reshetnikov, V. P.; Bizyaev, D. V.

2017-11-01

We present a detailed photometric study of a sample of 22 edge-on galaxies with clearly visible X-shaped structures. We propose a novel method to derive geometrical parameters of these features, along with the parameters of their host galaxies based on the multi-component photometric decomposition of galactic images. To include the X-shaped structure into our photometric model, we use the imfit package, in which we implement a new component describing the X-shaped structure. This method is applied for a sample of galaxies with available Sloan Digital Sky Survey and Spitzer IRAC 3.6 μm observations. In order to explain our results, we perform realistic N-body simulations of a Milky Way-type galaxy and compare the observed and the model X-shaped structures. Our main conclusions are as follows: (1) galaxies with strong X-shaped structures reside in approximately the same local environments as field galaxies; (2) the characteristic size of the X-shaped structures is about 2/3 of the bar size; (3) there is a correlation between the X-shaped structure size and its observed flatness: the larger structures are more flattened; (4) our N-body simulations qualitatively confirm the observational results and support the bar-driven scenario for the X-shaped structure formation.

CO2 in solid para-hydrogen: spectral splitting and the CO2···(o-H2)n clusters.

PubMed

Du, Jun-He; Wan, Lei; Wu, Lei; Xu, Gang; Deng, Wen-Ping; Liu, An-Wen; Chen, Yang; Hu, Shui-Ming

2011-02-17

Complicated high-resolution spectral structures are often observed for molecules doped in solid molecular hydrogen. The structures can result from miscellaneous effects and are often interpreted differently in references. The spectrum of the ν(3) band of CO(2) in solid para-H(2) presents a model system which exhibits rich spectral structures. With the help of the potential energy simulation of the CO(2) molecule doped in para-hydrogen matrix, and extensive experiments with different CO(2) isotopologues and different ortho-hydrogen concentrations in the matrix, the spectral features observed in p-H(2) matrix are assigned to the CO(2)···(o-H(2))(n) clusters and also to energy level splitting that is due to different alignments of the doped CO(2) molecules in the matrix. The assignments are further supported by the dynamics analysis and also by the spectrum recorded with sample codoped with O(2) which serves as catalyst transferring o-H(2) to p-H(2) in the matrix at 4 K temperature. The observed spectral features of CO(2)/pH(2) can potentially be used as an alternative readout of the temperature and orthohydrogen concentration in the solid para-hydrogen.

An Object-Oriented Approach for Analyzing CALIPSO's Profile Observations

NASA Astrophysics Data System (ADS)

Trepte, C. R.

2016-12-01

The CALIPSO satellite mission is a pioneering international partnership between NASA and the French Space Agency, CNES. Since launch on 28 April 2006, CALIPSO has been acquiring near-continuous lidar profile observations of clouds and aerosols in the Earth's atmosphere. Many studies have profitably used these observations to advance our understanding of climate, weather and air quality. For the most part, however, these studies have considered CALIPSO profile measurements independent from one another and have not related each to neighboring or family observations within a cloud element or aerosol feature. In this presentation we describe an alternative approach that groups measurements into objects visually identified from CALIPSO browse images. The approach makes use of the Visualization of CALIPSO (VOCAL) software tool that enables a user to outline a region of interest and save coordinates into a database. The selected features or objects can then be analyzed to explore spatial correlations over the feature's domain and construct bulk statistical properties for each structure. This presentation will show examples that examine cirrus and dust layers and will describe how this object-oriented approach can provide added insight into physical processes beyond conventional statistical treatments. It will further show results with combined measurements from other A-Train sensors to highlight advantages of viewing features in this manner.

An artificial network model for estimating the network structure underlying partially observed neuronal signals.

PubMed

Komatsu, Misako; Namikawa, Jun; Chao, Zenas C; Nagasaka, Yasuo; Fujii, Naotaka; Nakamura, Kiyohiko; Tani, Jun

2014-01-01

Many previous studies have proposed methods for quantifying neuronal interactions. However, these methods evaluated the interactions between recorded signals in an isolated network. In this study, we present a novel approach for estimating interactions between observed neuronal signals by theorizing that those signals are observed from only a part of the network that also includes unobserved structures. We propose a variant of the recurrent network model that consists of both observable and unobservable units. The observable units represent recorded neuronal activity, and the unobservable units are introduced to represent activity from unobserved structures in the network. The network structures are characterized by connective weights, i.e., the interaction intensities between individual units, which are estimated from recorded signals. We applied this model to multi-channel brain signals recorded from monkeys, and obtained robust network structures with physiological relevance. Furthermore, the network exhibited common features that portrayed cortical dynamics as inversely correlated interactions between excitatory and inhibitory populations of neurons, which are consistent with the previous view of cortical local circuits. Our results suggest that the novel concept of incorporating an unobserved structure into network estimations has theoretical advantages and could provide insights into brain dynamics beyond what can be directly observed. Copyright © 2014 Elsevier Ireland Ltd and the Japan Neuroscience Society. All rights reserved.

A Cloud Microphysics Model for the Gas Giant Planets

NASA Astrophysics Data System (ADS)

Palotai, Csaba J.; Le Beau, Raymond P.; Shankar, Ramanakumar; Flom, Abigail; Lashley, Jacob; McCabe, Tyler

2016-10-01

Recent studies have significantly increased the quality and the number of observed meteorological features on the jovian planets, revealing banded cloud structures and discrete features. Our current understanding of the formation and decay of those clouds also defines the conceptual modes about the underlying atmospheric dynamics. The full interpretation of the new observational data set and the related theories requires modeling these features in a general circulation model (GCM). Here, we present details of our bulk cloud microphysics model that was designed to simulate clouds in the Explicit Planetary Hybrid-Isentropic Coordinate (EPIC) GCM for the jovian planets. The cloud module includes hydrological cycles for each condensable species that consist of interactive vapor, cloud and precipitation phases and it also accounts for latent heating and cooling throughout the transfer processes (Palotai and Dowling, 2008. Icarus, 194, 303-326). Previously, the self-organizing clouds in our simulations successfully reproduced the vertical and horizontal ammonia cloud structure in the vicinity of Jupiter's Great Red Spot and Oval BA (Palotai et al. 2014, Icarus, 232, 141-156). In our recent work, we extended this model to include water clouds on Jupiter and Saturn, ammonia clouds on Saturn, and methane clouds on Uranus and Neptune. Details of our cloud parameterization scheme, our initial results and their comparison with observations will be shown. The latest version of EPIC model is available as open source software from NASA's PDS Atmospheres Node.

Observations of low-frequency inertia-gravity waves in the lower stratosphere over Arecibo

NASA Technical Reports Server (NTRS)

Cornish, C. R.; Larsen, M. F.

1989-01-01

Results are presented of a detailed analysis of the horizontal wind data in the subtropical upper troposphere and lower stratosphere, obtained with the 430-MHz radar at Arecibo (Puerto Rico) in May 1982 and April 1983. Both sets of observations displayed a slowly varying anticyclonically rotating persistent structure in the wind field just above the tropopause, of the type that would be expected if the oscillations were associated with quasi-inertial period waves. The quasi-inertial period structure in the Arecibo observations appears to be typical of the results of a number of other studies, indicating that quasi-inertial period waves are a ubiquitous feature in the lower stratosphere, similar to what is observed in the oceans.

Role of Biomass Burning in the Formation of Tropospheric Ozone Laminae

NASA Astrophysics Data System (ADS)

Nair, U. S.; Wu, Y.; Kuang, S.; Newchurch, M.

2016-12-01

Laminar structure in free-tropospheric ozone profiles is a feature that is frequently observed in ozonesonde and lidar observations. Origins of these features are not well understood and have been linked to tropopause folding, stratospheric warming events and biomass burning emissions. Ozone laminae events with maximum ozone exceeding 80 ppb have been observed by the DIfferential Absorption Lidar (DIAL) instrument in Huntsville, Alabama. While many of the events are linked to tropopause folding, a subset of events located in the mid troposphere (2-6km) coincided with a smoke layer are associated with biomass burning. Satellite observations show the smoke originated from northwestern US wildfire events. Several of these ozone laminae associated with smoke have ozone excess of 20 ppb above the background values and have the potential to impact surface air quality if they enter the boundary layer. This presentation will report on process studies of ozone laminae associated with biomass burning plumes using A-Train satellite, ground based DIAL and ozonesonde observations. Fate and transport of the feature is also examined using WRFChem simulations, in specific transport into the boundary layer and impact on air quality at the surface.

Landscape features impact connectivity between soil populations: a comparative study of gene flow in earthworms.

PubMed

Dupont, L; Torres-Leguizamon, M; René-Corail, P; Mathieu, J

2017-06-01

Landscape features are known to alter the spatial genetic variation of aboveground organisms. Here, we tested the hypothesis that the genetic structure of belowground organisms also responds to landscape structure. Microsatellite markers were used to carry out a landscape genetic study of two endogeic earthworm species, Allolobophora chlorotica (N = 440, eight microsatellites) and Aporrectodea icterica (N = 519, seven microsatellites), in an agricultural landscape in the North of France, where landscape features were characterized with high accuracy. We found that habitat fragmentation impacted genetic variation of earthworm populations at the local scale. A significant relationship was observed between genetic diversity (H e , A r ) and several landscape features in A. icterica populations and A. chlorotica. Moreover, a strong genetic differentiation between sites was observed in both species, with a low degree of genetic admixture and high F st values. The landscape connectivity analysis at the regional scale, including isolation by distance, least-cost path and cost-weighted distance approaches, showed that genetic distances were linked to landscape connectivity in A. chlorotica. This indicates that the fragmentation of natural habitats has shaped their dispersal patterns and local effective population sizes. Landscape connectivity analysis confirmed that a priori favourable habitats such as grasslands may constitute dispersal corridors for these species. © 2017 John Wiley & Sons Ltd.

A Comparison of Supervised Machine Learning Algorithms and Feature Vectors for MS Lesion Segmentation Using Multimodal Structural MRI

PubMed Central

Sweeney, Elizabeth M.; Vogelstein, Joshua T.; Cuzzocreo, Jennifer L.; Calabresi, Peter A.; Reich, Daniel S.; Crainiceanu, Ciprian M.; Shinohara, Russell T.

2014-01-01

Machine learning is a popular method for mining and analyzing large collections of medical data. We focus on a particular problem from medical research, supervised multiple sclerosis (MS) lesion segmentation in structural magnetic resonance imaging (MRI). We examine the extent to which the choice of machine learning or classification algorithm and feature extraction function impacts the performance of lesion segmentation methods. As quantitative measures derived from structural MRI are important clinical tools for research into the pathophysiology and natural history of MS, the development of automated lesion segmentation methods is an active research field. Yet, little is known about what drives performance of these methods. We evaluate the performance of automated MS lesion segmentation methods, which consist of a supervised classification algorithm composed with a feature extraction function. These feature extraction functions act on the observed T1-weighted (T1-w), T2-weighted (T2-w) and fluid-attenuated inversion recovery (FLAIR) MRI voxel intensities. Each MRI study has a manual lesion segmentation that we use to train and validate the supervised classification algorithms. Our main finding is that the differences in predictive performance are due more to differences in the feature vectors, rather than the machine learning or classification algorithms. Features that incorporate information from neighboring voxels in the brain were found to increase performance substantially. For lesion segmentation, we conclude that it is better to use simple, interpretable, and fast algorithms, such as logistic regression, linear discriminant analysis, and quadratic discriminant analysis, and to develop the features to improve performance. PMID:24781953

A comparison of supervised machine learning algorithms and feature vectors for MS lesion segmentation using multimodal structural MRI.

PubMed

Sweeney, Elizabeth M; Vogelstein, Joshua T; Cuzzocreo, Jennifer L; Calabresi, Peter A; Reich, Daniel S; Crainiceanu, Ciprian M; Shinohara, Russell T

2014-01-01

Machine learning is a popular method for mining and analyzing large collections of medical data. We focus on a particular problem from medical research, supervised multiple sclerosis (MS) lesion segmentation in structural magnetic resonance imaging (MRI). We examine the extent to which the choice of machine learning or classification algorithm and feature extraction function impacts the performance of lesion segmentation methods. As quantitative measures derived from structural MRI are important clinical tools for research into the pathophysiology and natural history of MS, the development of automated lesion segmentation methods is an active research field. Yet, little is known about what drives performance of these methods. We evaluate the performance of automated MS lesion segmentation methods, which consist of a supervised classification algorithm composed with a feature extraction function. These feature extraction functions act on the observed T1-weighted (T1-w), T2-weighted (T2-w) and fluid-attenuated inversion recovery (FLAIR) MRI voxel intensities. Each MRI study has a manual lesion segmentation that we use to train and validate the supervised classification algorithms. Our main finding is that the differences in predictive performance are due more to differences in the feature vectors, rather than the machine learning or classification algorithms. Features that incorporate information from neighboring voxels in the brain were found to increase performance substantially. For lesion segmentation, we conclude that it is better to use simple, interpretable, and fast algorithms, such as logistic regression, linear discriminant analysis, and quadratic discriminant analysis, and to develop the features to improve performance.

Correlation of ICME Magnetic Fields at Radially Aligned Spacecraft

NASA Astrophysics Data System (ADS)

Good, S. W.; Forsyth, R. J.; Eastwood, J. P.; Möstl, C.

2018-03-01

The magnetic field structures of two interplanetary coronal mass ejections (ICMEs), each observed by a pair of spacecraft close to radial alignment, have been analysed. The ICMEs were observed in situ by MESSENGER and STEREO-B in November 2010 and November 2011, while the spacecraft were separated by more than 0.6 AU in heliocentric distance, less than 4° in heliographic longitude, and less than 7° in heliographic latitude. Both ICMEs took approximately two days to travel between the spacecraft. The ICME magnetic field profiles observed at MESSENGER have been mapped to the heliocentric distance of STEREO-B and compared directly to the profiles observed by STEREO-B. Figures that result from this mapping allow for easy qualitative assessment of similarity in the profiles. Macroscale features in the profiles that varied on timescales of one hour, and which corresponded to the underlying flux rope structure of the ICMEs, were well correlated in the solar east-west and north-south directed components, with Pearson's correlation coefficients of approximately 0.85 and 0.95, respectively; microscale features with timescales of one minute were uncorrelated. Overall correlation values in the profiles of one ICME were increased when an apparent change in the flux rope axis direction between the observing spacecraft was taken into account. The high degree of similarity seen in the magnetic field profiles may be interpreted in two ways. If the spacecraft sampled the same region of each ICME ( i.e. if the spacecraft angular separations are neglected), the similarity indicates that there was little evolution in the underlying structure of the sampled region during propagation. Alternatively, if the spacecraft observed different, nearby regions within the ICMEs, it indicates that there was spatial homogeneity across those different regions. The field structure similarity observed in these ICMEs points to the value of placing in situ space weather monitors well upstream of the Earth.

Vibrational structure of the S 2 (1B u) excited state of diphenyloctatetraene observed by femtosecond stimulated Raman spectroscopy

NASA Astrophysics Data System (ADS)

Kukura, Philipp; McCamant, David W.; Davis, Paul H.; Mathies, Richard A.

2003-11-01

Femtosecond time-resolved stimulated Raman spectroscopy (FSRS) is used to study the vibrational structure and dynamics of the S 2 state of diphenyloctatetraene. Strong vibrational features at 1184, 1259 and 1578 cm -1 whose linewidths are determined by the S 2 electronic lifetime are observed at early times after photoexcitation at 397 nm. Kinetic analysis of the integrated Raman intensities as well as the transient absorption reveals an exponential decay of the S 2 state on the order of 100 fs. These results demonstrate the ability of FSRS to study the vibrational structure of excited state and chemical reaction dynamics on the femtosecond timescale.

Evidence for mass loss at polar latitudes in the Be stars Omega Orionis and 66 Ophiuchi

NASA Technical Reports Server (NTRS)

Peters, G. J.

1982-01-01

IUE observations of the pole-on Be stars Omega Ori and 66 Oph have revealed the unexpected presence of high velocity (-250 to -850 km/sec), relatively narrow (about 1 A) absorption components to the resonance lines of C IV, Si IV, and Si III. The C IV features show structure indicative of multiple shells or clouds. If Omega Ori and 66 Oph are indeed viewed pole-on, then these observations suggest that substantial matter is being ejected from the polar regions of these stars. The nature of these unusual high velocity features, which were not observed in other pole-on Be stars considered in the program, and the column densities and mass loss rates implied by them are discussed in this Letter.

Inorganic bromine in organic molecular crystals: Database survey and four case studies

NASA Astrophysics Data System (ADS)

Nemec, Vinko; Lisac, Katarina; Stilinović, Vladimir; Cinčić, Dominik

2017-01-01

We present a Cambridge Structural Database and experimental study of multicomponent molecular crystals containing bromine. The CSD study covers supramolecular behaviour of bromide and tribromide anions as well as halogen bonded dibromine molecules in crystal structures of organic salts and cocrystals, and a study of the geometries and complexities in polybromide anion systems. In addition, we present four case studies of organic structures with bromide, tribromide and polybromide anions as well as the neutral dibromine molecule. These include the first observed crystal with diprotonated phenazine, a double salt of phenazinium bromide and tribromide, a cocrystal of 4-methoxypyridine with the neutral dibromine molecule as a halogen bond donor, as well as bis(4-methoxypyridine)bromonium polybromide. Structural features of the four case studies are in the most part consistent with the statistically prevalent behaviour indicated by the CSD study for given bromine species, although they do exhibit some unorthodox structural features and in that indicate possible supramolecular causes for aberrations from the statistically most abundant (and presumably most favourable) geometries.

Aspects of three-dimensional strain at the margin of the extensional orogen, Virgin River depression area, Nevada, Utah, and Arizona

USGS Publications Warehouse

Anderson, R.E.; Barnhard, T.P.

1993-01-01

The Virgin River depression and surrounding mountains are Neogene features that are partly contiguous with the little-strained rocks of the structural transition to the Colorado Plateau province. This contiguity makes the area ideally suited for evaluating the sense, magnitude, and kinematics of Neogene deformation. Analysis along the strain boundary shows that, compared to the adjacent little-strained area, large-magnitude vertical deformation greatly exceeds extensional deformation and that significant amounts of lateral displacement approximately parallel the province boundary. Isostatic rebound following tectonic denudation is an unlikely direct cause of the strong vertical structural relief adjacent to the strain boundary. Instead, the observed structures are first-order features defining a three-dimensional strain field produced by approximately east-west extension, vertical structural attenuation, and extension-normal shortening. All major structural elements of the strain-boundary strain field are also found in the adjacent Basin and Range. -from Authors

Atomic structures of fibrillar segments of hIAPP suggest tightly mated β-sheets are important for cytotoxicity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Krotee, Pascal; Rodriguez, Jose A.; Sawaya, Michael R.

2017-01-03

hIAPP fibrils are associated with Type-II Diabetes, but the link of hIAPP structure to islet cell death remains elusive. Here we observe that hIAPP fibrils are cytotoxic to cultured pancreatic β-cells, leading us to determine the structure and cytotoxicity of protein segments composing the amyloid spine of hIAPP. Using the cryoEM method MicroED, we discover that one segment, 19–29 S20G, forms pairs of β-sheets mated by a dry interface that share structural features with and are similarly cytotoxic to full-length hIAPP fibrils. In contrast, a second segment, 15–25 WT, forms non-toxic labile β-sheets. These segments possess different structures and cytotoxicmore » effects, however, both can seed full-length hIAPP, and cause hIAPP to take on the cytotoxic and structural features of that segment. These results suggest that protein segment structures represent polymorphs of their parent protein and that segment 19–29 S20G may serve as a model for the toxic spine of hIAPP.« less

Alteration textures in terrestrial volcanic glass and the associated bacterial community.

PubMed

Cockell, C S; Olsson-Francis, K; Herrera, A; Meunier, A

2009-01-01

Alteration textures were examined in subglacial (hyaloclastite) deposits at Valafell, Southern Iceland. Pitted and 'elongate' alteration features are observed in the glass similar to granular and tubular features reported previously in deep-ocean basaltic glasses, but elongate features generally did not have a length to width ratio greater than five. Elongate features were found in only 7% of surfaces. Crystalline basalt clasts, which are incorporated into the hyaloclastite, did not display elongate structures. Pitted alteration features were poorly defined in crystalline basalt, comprising only 4% of the surface compared to 47% in the case of basaltic glass. Examination of silica-rich glass (obsidian) and rhyolite similarly showed poorly defined pitted textures that comprised less than 15% of the surface and no elongate features were observed. These data highlight the differences in alteration textures between terrestrial basaltic glass and previously studied deep-ocean and subsurface basaltic glass, and the important role of mineralogy in controlling the type and abundance of alteration features. The hyaloclastite contains a diverse and abundant bacterial population, as determined by 16S rDNA analysis, which could be involved in weathering the glass. Despite the presence of phototrophs, we show that they were not involved in the production of most alteration textures in the basaltic glass materials we examined.

Thermal infrared emission spectroscopy of the pyroxene mineral series

NASA Astrophysics Data System (ADS)

Hamilton, Victoria E.

2000-04-01

The thermal infrared emissivity spectra of coarse particulate samples of compositions in the pyroxene series display reststrahlen features (absorptions) that distinguish not only orthorhombic from monoclinic structures, but also major end-members within the two structural groups, as well as minerals within solid solution series. The exact number of reststrahlen features observed and their positions are dependent on mineral structure and cation occupancy of the M1 and M2 sites. End-member quadrilateral pyroxenes (Mg2Si2O6-Fe2Si2O6-Ca[Mg,Fe]Si2O6) are easily distinguished from each other and from minerals in the nonquadrilateral series (NaFeSi2O6-Na[Al,Fe]Si2O6-LiAlSi2O6). Furthermore, among quadrilateral pyroxenes, variations in Mg/(Mg+Fe) are linearly correlated with several band locations, as are variations in Ca content in high-Ca clinopyroxenes. In both quadrilateral and nonquadrilateral compositions, Christiansen feature positions are also diagnostic. No correlations with minor constituents (of the order of 0.05 atoms per formula unit) were observed. The detailed spectral characteristics of pyroxenes and their variability as a function of structure and cation occupancy are presented here with determinative curves for the identification of pyroxene composition. These data have important implications for the interpretation of spectral data from both laboratory and remote sensing instruments because they should permit a more detailed determination of pyroxene composition in measured unknown pure mineral and bulk compositions dominated by surface scattering, i.e., all particulates greater than ~65 μm, and solid samples.

Very high resolution Earth observation features for monitoring plant and animal community structure across multiple spatial scales in protected areas

NASA Astrophysics Data System (ADS)

Mairota, Paola; Cafarelli, Barbara; Labadessa, Rocco; Lovergine, Francesco; Tarantino, Cristina; Lucas, Richard M.; Nagendra, Harini; Didham, Raphael K.

2015-05-01

Monitoring the status and future trends in biodiversity can be prohibitively expensive using ground-based surveys. Consequently, significant effort is being invested in the use of satellite remote sensing to represent aspects of the proximate mechanisms (e.g., resource availability) that can be related to biodiversity surrogates (BS) such as species community descriptors. We explored the potential of very high resolution (VHR) satellite Earth observation (EO) features as proxies for habitat structural attributes that influence spatial variation in habitat quality and biodiversity change. In a semi-natural grassland mosaic of conservation concern in southern Italy, we employed a hierarchical nested sampling strategy to collect field and VHR-EO data across three spatial extent levels (landscape, patch and plot). Species incidence and abundance data were collected at the plot level for plant, insect and bird functional groups. Spectral and textural VHR-EO image features were derived from a Worldview-2 image. Three window sizes (grains) were tested for analysis and computation of textural features, guided by the perception limits of different organisms. The modelled relationships between VHR-EO features and BS responses differed across scales, suggesting that landscape, patch and plot levels are respectively most appropriate when dealing with birds, plants and insects. This research demonstrates the potential of VHR-EO for biodiversity mapping and habitat modelling, and highlights the importance of identifying the appropriate scale of analysis for specific taxonomic groups of interest. Further, textural features are important in the modelling of functional group-specific indices which represent BS in high conservation value habitat types, and provide a more direct link to species interaction networks and ecosystem functioning, than provided by traditional taxonomic diversity indices.

MOND simulation suggests an origin for some peculiarities in the Local Group

NASA Astrophysics Data System (ADS)

Bílek, M.; Thies, I.; Kroupa, P.; Famaey, B.

2018-06-01

Context. The Milky Way (MW) and Andromeda (M 31) galaxies possess rotating planes of satellites. The formation of these planes has not been explained satisfactorily so far. It has been suggested that the MW and M 31 satellites are ancient tidal dwarf galaxies; this might explain their configuration. This suggestion gained support by an analytic backward-calculation of the relative MW-M 31 orbit in the MOND modified dynamics paradigm. The result implied that the galaxies experienced a close flyby 7-11 Gyr ago. Aims: Here we explore the Local Group history in MOND in more detail using a simplified first-ever self-consistent simulation. We describe the features induced by the encounter in the simulation and identify possible real counterparts of these features. Methods: The initial conditions were set to eventually roughly reproduce the observed MW and M 31 masses, effective radii, separation, relative velocity, and disk inclinations. We used the publicly available adaptive-mesh-refinement code Phantom of RAMSES. Results: Matter was transferred from the MW to M 31 along a tidal tail in the simulation. The encounter induced the formation of several structures resembling the peculiarities of the Local Group. Most notably are that 1) a rotating planar structure formed around M 31 from the transferred material. It had a size similar to the observed satellite plane and was oriented edge-on to the simulated MW, just as the real plane. 2) The same structure also resembled the tidal features observed around M 31 by its size and morphology. 3) A warp in the MW developed with an amplitude and orientation similar to that observed. 4) A cloud of particles formed around the simulated MW, with the extent of the actual MW satellite system. The encounter did not end by merging in a Hubble time. The simulated stellar disks also thickened as a result of the encounter. Conclusions: The simulation demonstrated that MOND might explain many peculiarities of the Local Group; this needs to be verified with additional simulations. The simulation moreover showed that tidal features observed in galaxies, usually interpreted as merger remnants, could have been formed by matter exchange during non-merging galactic flybys in some cases. Three movies are available at http://www.aanda.org

Earth observation taken by the Expedition 28 crew

NASA Image and Video Library

2011-09-08

ISS028-E-044433 (8 Sept. 2011) --- Bigach Impact Crater in Kazakhstan is featured in this image photographed by an Expedition 28 crew member on the International Space Station. Some meteor impact craters, like Barringer Crater in Arizona, are easily recognizable on the landscape due to well-preserved form and features. Other impact structures, such as Bigach Impact Crater in northeastern Kazakhstan are harder to recognize due to their age, modification by subsequent geologic processes, or even human alteration of the landscape. According to scientists, at approximately 5 million years old, Bigach is a relatively young geologic feature; however active tectonic processes in the region have caused movement of parts of the structure along faults, leading to a somewhat angular appearance (center). The roughly circular rim of the eight kilometers in diameter structure is still discernable around the relatively flat interior in this photograph. In addition to modification by faulting and erosion, the interior of the impact structure has also been used for agricultural activities, as indicated by the presence of tan regular graded fields. Other rectangular agricultural fields are visible to the northeast and east. The closest settlement, Novopavlovka, is barely visible near the top of the image.

X-ray diffraction, crystal structure, and spectral features of the optical susceptibilities of single crystals of the ternary borate oxide lead bismuth tetraoxide, PbBiBO4.

PubMed

Reshak, Ali Hussain; Kityk, I V; Auluck, S; Chen, Xuean

2009-05-14

The all-electron full-potential linearized augmented plane-wave method has been used for an ab initio theoretical study of the band structure, the spectral features of the optical susceptibilities, the density of states, and the electron charge density for PbBiBO4. Our calculations show that the valence-band maximum (VBM) and conduction-band minimum (CBM) are located at the center of the Brillouin zone, resulting in a direct energy gap of about 3.2 eV. We have synthesized the PbBiBO4 crystal by employing a conventional solid-state reaction method. The theoretical calculations in this work are based on the structure built from our measured atomic parameters. We should emphasize that the observed experimental X-ray diffraction (XRD) pattern is in good agreement with the theoretical one, confirming that our structural model is valid. Our calculated bond lengths show excellent agreement with the experimental data. This agreement is attributed to our use of full-potential calculations. The spectral features of the optical susceptibilities show a small positive uniaxial anisotropy.

Electrical conduction at domain walls in multiferroic BiFeO3

NASA Astrophysics Data System (ADS)

Seidel, Jan; Martin, Lane; He, Qing; Zhan, Qian; Chu, Ying-Hao; Rother, Axel; Hawkridge, Michael; Maksymovych, Peter; Yu, Pu; Gajek, Martin; Balke, Nina; Kalinin, Sergei; Gemming, Sybille; Wang, Feng; Catalán, Gustau; Scott, James; Spaldin, Nicola; Orenstein, Joseph; Ramesh, Ramamoorthy

2009-03-01

We report the observation of room temperature electronic conductivity at ferroelectric domain walls in BiFeO3. The origin and nature of the observed conductivity is probed using a combination of conductive atomic force microscopy, high resolution transmission electron microscopy and first-principles density functional computations. We show that a structurally driven change in both the electrostatic potential and local electronic structure (i.e., a decrease in band gap) at the domain wall leads to the observed electrical conductivity. We estimate the conductivity in the wall to be several orders of magnitude higher than for the bulk material. Additionally we demonstrate the potential for device applications of such conducting nanoscale features.

OBSERVATIONS ON A CASE OF CYCLIC ALBUMINURIA.

PubMed

Mendel, L B; Hooker, D B

1901-10-01

The preceding observations record a new instance of the occurrence of cyclic albuminuria in an otherwise apparently healthy young man. The typical course of the proteid excretion from hour to hour under various conditions has been reviewed and its independence of the changes in diet or muscular work pointed out. No relationship between the volume of urine eliminated and the quantity of proteid excreted has been ascertained. The specific effect of the horizontal posture in dispelling the albuminuria is the most interesting feature observed. The attempt to refer this to attendant circulatory changes in the kidneys is, for the present, no more than an interesting speculation. See PDF for Structure See PDF for Structure.

Western Pacific Tropical Cyclone Adaptive Observing of Inner Core Life-cycle Structure and Intensity Change

DTIC Science & Technology

2009-09-30

airborne radar images; develop an analysis scheme for the monsoon and storm- scale circulation features that would: a. Define large-scale context...Doppler radar observations of TC mesoscale observations. The TCS-08 field program provided unique aircraft reconnaissance (recon) data that will be...system for WC-130J, as well as developed new system for recording airborne radar video for the first time. 3. Created an archive of all WC-130J

Investigations on the Mechanical Properties of Conducting Polymer Coating-Substrate Structures and Their Influencing Factors

PubMed Central

Wang, Xi-Shu; Tang, Hua-Ping; Li, Xu-Dong; Hua, Xin

2009-01-01

This review covers recent advances and work on the microstructure features, mechanical properties and cracking processes of conducting polymer film/coating- substrate structures under different testing conditions. An attempt is made to characterize and quantify the relationships between mechanical properties and microstructure features. In addition, the film cracking mechanism on the micro scale and some influencing factors that play a significant role in the service of the film-substrate structure are presented. These investigations cover the conducting polymer film/coating nucleation process, microstructure-fracture characterization, translation of brittle-ductile fractures, and cracking processes near the largest inherent macromolecule defects under thermal-mechanical loadings, and were carried out using in situ scanning electron microscopy (SEM) observations, as a novel method for evaluation of interface strength and critical failure stress. PMID:20054470

Ocean Classification of Dynamical Structures Detected by SAR and Spectral Methods

NASA Astrophysics Data System (ADS)

Redondo, J. M.; Martinez-Benjamin, J. J.; Tellez, J. D.; Jorge, J.; Diez, M.; Sekula, E.

2016-08-01

We discuss a taxonomy of different dynamical features in the ocean surface and provide some eddy and front statistics, as well as describing some events detected by several satellites and even with additional cruise observations and measurements, in the North-west Mediterranean Sea area between 1996 and 2012. The structure of the flows are presented using self-similar traces that may be used to parametrize mixing at both limits of the Rossby Deformation Radius scale, RL. Results show the ability to identify different SAR signatures and at the same time provide calibrations for the different local configurations of vortices, spirals, Langmuir cells, oil spills and tensioactive slicks that eventually allow the study of the self-similar structure of the turbulence. Depending on the surface wind and wave level, and also on the fetch. the bathimetry, the spiral parameters and the resolution of vortical features change. Previous descriptions did not include the new wind and buoyancy features. SAR images also show the turbulence structure of the coastal area and the Regions of Fresh Water Influence (ROFI). It is noteworthy tt such complex coastal field-dependent behavior is strongly influenced by stratification and rotation of the turbulence spectrum is observed only in the range smaller than the local Rossby deformation radius, RL. The measures of diffusivity from buoy or tracer experiments are used to calibrate the behavior of different tracers and pollutants, both natural and man-made in the NW Mediterranean Sea. Thanks to different polarization and intensity levels in ASAR satellite imagery, these can be used to distinguish between natural and man-made sea surface features due to their distinct self-similar and fractal as a function of spill and slick parameters, environmental conditions and history of both oil releases and weather conditions. Eddy diffusivity map derived from SAR measurements of the ocean surface, performing a feature spatial correlation of the available images of the region are presented. Both the multi fractal discrimination of the local features and the diffusivity measurements are important to evaluate the state of the environment. The distribution of meso-scale vortices of size, the Rossby deformation scale and other dominant features can be used to distinguish features in the ocean surface. Multi-fractal analysis is then very usefull. The SAR images exhibited a large variation of natural features produced by winds, internal waves, the bathymetric distribution, by convection, rain, etc as all of these produce variations in the sea surface roughness so that the topological changes may be studied and classified. In a similar way bathimetry may be studied with the methodology described here using the coastline and the thalwegs as generators of local vertical vorticity.

An Investigation of the Fine Spatial Structure of Meteor Streams Using the Relational Database ``Meteor''

NASA Astrophysics Data System (ADS)

Karpov, A. V.; Yumagulov, E. Z.

2003-05-01

We have restored and ordered the archive of meteor observations carried out with a meteor radar complex ``KGU-M5'' since 1986. A relational database has been formed under the control of the Database Management System (DBMS) Oracle 8. We also improved and tested a statistical method for studying the fine spatial structure of meteor streams with allowance for the specific features of application of the DBMS. Statistical analysis of the results of observations made it possible to obtain information about the substance distribution in the Quadrantid, Geminid, and Perseid meteor streams.

Development of solar flares and features of the fine structure of solar radio emission

NASA Astrophysics Data System (ADS)

Chernov, G. P.; Fomichev, V. V.; Yan, Y.; Tan, B.; Tan, Ch.; Fu, Q.

2017-11-01

The reason for the occurrence of different elements of the fine structure of solar radio bursts in the decimeter and centimeter wavelength ranges has been determined based on all available data from terrestrial and satellite observations. In some phenomena, fast pulsations, a zebra structre, fiber bursts, and spikes have been observed almost simultaneously. Two phenomena have been selected to show that the pulsations of radio emission are caused by particles accelerated in the magnetic reconnection region and that the zebra structure is excited in a source, such as a magnetic trap for fast particles. The complex combination of unusual fiber bursts, zebra structure, and spikes in the phenomenon on December 1, 2004, is associated with a single source, a magnetic island formed after a coronal mass ejection.

Analyzing surface features on icy satellites using a new two-layer analogue model

NASA Astrophysics Data System (ADS)

Morales, K. M.; Leonard, E. J.; Pappalardo, R. T.; Yin, A.

2017-12-01

The appearance of similar surface morphologies across many icy satellites suggests potentially unified formation mechanisms. Constraining the processes that shape the surfaces of these icy worlds is fundamental to understanding their rheology and thermal evolution—factors that have implications for potential habitability. Analogue models have proven useful for investigating and quantifying surface structure formation on Earth, but have only been sparsely applied to icy bodies. In this study, we employ an innovative two-layer analogue model that simulates a warm, ductile ice layer overlain by brittle surface ice on satellites such as Europa and Enceladus. The top, brittle layer is composed of fine-grained sand while the ductile, lower viscosity layer is made of putty. These materials were chosen because they scale up reasonably to the conditions on Europa and Enceladus. Using this analogue model, we investigate the role of the ductile layer in forming contractional structures (e.g. folds) that would compensate for the over-abundance of extensional features observed on icy satellites. We do this by simulating different compressional scenarios in the analogue model and analyzing whether the resulting features resemble those on icy bodies. If the resulting structures are similar, then the model can be used to quantify the deformation by calculating strain. These values can then be scaled up to Europa or Enceladus and used to quantity the observed surface morphologies and the amount of extensional strain accommodated by certain features. This presentation will focus on the resulting surface morphologies and the calculated strain values from several analogue experiments. The methods and findings from this work can then be expanded and used to study other icy bodies, such as Triton, Miranda, Ariel, and Pluto.

X-ray observations of characteristic structures and time variations from the solar corona - Preliminary results from Skylab.

NASA Technical Reports Server (NTRS)

Vaiana, G. S.; Davis, J. M.; Giacconi, R.; Krieger, A. S.; Silk, J. K.; Timothy, A. F.; Zombeck, M.

1973-01-01

Examples taken from the S-054 X-ray telescope observations made during the first Skylab mission show the hot coronal plasma tracing the configuration of the magnetic fields. The high spectral resolution and sensitivity of the instrument has enabled the following two facts to be more firmly established: (1) that the 'quiet homogeneous corona' is in fact highly structured and that the structures observed appear to be the results of dispersed active region magnetic fields; and (2) that numerous bright points are distributed randomly on the disk. Their presence at high latitudes may play a role in solar cycle models. In addition, the capability of Skylab for studying time evolution has enabled the restructuring of coronal features to be seen at times of high activity, indicating a restructuring of the coronal magnetic fields.

Manifestations of Kitaev physics in thermodynamic properties of hexagonal iridates and α-RuCl3

NASA Astrophysics Data System (ADS)

Tsirlin, Alexander

Kitaev model is hard to achieve in real materials. Best candidates available so far are hexagonal iridates M2IrO3 (M = Li and Na) and the recently discovered α-RuCl3 featuring hexagonal layers coupled by weak van der Waals bonding. I will review recent progress in crystal growth of these materials and compare their thermodynamic properties. Both hexagonal iridates and α-RuCl3 feature highly anisotropic Curie-Weiss temperatures that not only differ in magnitude but also change sign depending on the direction of the applied magnetic field. Néel temperatures are largely suppressed compared to the energy scale of the Curie-Weiss temperatures. These experimental observations will be linked to features of the electronic structure and to structural peculiarities associated with deviations from the ideal hexagonal symmetry. I will also discuss how the different nature of ligand atoms affects electronic structure and magnetic superexchange. This work has been done in collaboration with M. Majumder, M. Schmidt, M. Baenitz, F. Freund, and P. Gegenwart.

XAFS study of copper(II) complexes with square planar and square pyramidal coordination geometries

NASA Astrophysics Data System (ADS)

Gaur, A.; Klysubun, W.; Nitin Nair, N.; Shrivastava, B. D.; Prasad, J.; Srivastava, K.

2016-08-01

X-ray absorption fine structure of six Cu(II) complexes, Cu2(Clna)4 2H2O (1), Cu2(ac)4 2H2O (2), Cu2(phac)4 (pyz) (3), Cu2(bpy)2(na)2 H2O (ClO4) (4), Cu2(teen)4(OH)2(ClO4)2 (5) and Cu2(tmen)4(OH)2(ClO4)2 (6) (where ac, phac, pyz, bpy, na, teen, tmen = acetate, phenyl acetate, pyrazole, bipyridine, nicotinic acid, tetraethyethylenediamine, tetramethylethylenediamine, respectively), which were supposed to have square pyramidal and square planar coordination geometries have been investigated. The differences observed in the X-ray absorption near edge structure (XANES) features of the standard compounds having four, five and six coordination geometry points towards presence of square planar and square pyramidal geometry around Cu centre in the studied complexes. The presence of intense pre-edge feature in the spectra of four complexes, 1-4, indicates square pyramidal coordination. Another important XANES feature, present in complexes 5 and 6, is prominent shoulder in the rising part of edge whose intensity decreases in the presence of axial ligands and thus indicates four coordination in these complexes. Ab initio calculations were carried out for square planar and square pyramidal Cu centres to observe the variation of 4p density of states in the presence and absence of axial ligands. To determine the number and distance of scattering atoms around Cu centre in the complexes, EXAFS analysis has been done using the paths obtained from Cu(II) oxide model and an axial Cu-O path from model of a square pyramidal complex. The results obtained from EXAFS analysis have been reported which confirmed the inference drawn from XANES features. Thus, it has been shown that these paths from model of a standard compound can be used to determine the structural parameters for complexes having unknown structure.

Atomic Structure of GRK5 Reveals Distinct Structural Features Novel for G Protein-coupled Receptor Kinases.

PubMed

Komolov, Konstantin E; Bhardwaj, Anshul; Benovic, Jeffrey L

2015-08-21

G protein-coupled receptor kinases (GRKs) are members of the protein kinase A, G, and C families (AGC) and play a central role in mediating G protein-coupled receptor phosphorylation and desensitization. One member of the family, GRK5, has been implicated in several human pathologies, including heart failure, hypertension, cancer, diabetes, and Alzheimer disease. To gain mechanistic insight into GRK5 function, we determined a crystal structure of full-length human GRK5 at 1.8 Å resolution. GRK5 in complex with the ATP analog 5'-adenylyl β,γ-imidodiphosphate or the nucleoside sangivamycin crystallized as a monomer. The C-terminal tail (C-tail) of AGC kinase domains is a highly conserved feature that is divided into three segments as follows: the C-lobe tether, the active-site tether (AST), and the N-lobe tether (NLT). This domain is fully resolved in GRK5 and reveals novel interactions with the nucleotide and N-lobe. Similar to other AGC kinases, the GRK5 AST is an integral part of the nucleotide-binding pocket, a feature not observed in other GRKs. The AST also mediates contact between the kinase N- and C-lobes facilitating closure of the kinase domain. The GRK5 NLT is largely displaced from its previously observed position in other GRKs. Moreover, although the autophosphorylation sites in the NLT are >20 Å away from the catalytic cleft, they are capable of rapid cis-autophosphorylation suggesting high mobility of this region. In summary, we provide a snapshot of GRK5 in a partially closed state, where structural elements of the kinase domain C-tail are aligned to form novel interactions to the nucleotide and N-lobe not previously observed in other GRKs. © 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Nonequilibrium critical behavior of model statistical systems and methods for the description of its features

NASA Astrophysics Data System (ADS)

Prudnikov, V. V.; Prudnikov, P. V.; Mamonova, M. V.

2017-11-01

This paper reviews features in critical behavior of far-from-equilibrium macroscopic systems and presents current methods of describing them by referring to some model statistical systems such as the three-dimensional Ising model and the two-dimensional XY model. The paper examines the critical relaxation of homogeneous and structurally disordered systems subjected to abnormally strong fluctuation effects involved in ordering processes in solids at second-order phase transitions. Interest in such systems is due to the aging properties and fluctuation-dissipation theorem violations predicted for and observed in systems slowly evolving from a nonequilibrium initial state. It is shown that these features of nonequilibrium behavior show up in the magnetic properties of magnetic superstructures consisting of alternating nanoscale-thick magnetic and nonmagnetic layers and can be observed not only near the film’s critical ferromagnetic ordering temperature Tc, but also over the wide temperature range T ⩽ Tc.

Scanning electron microscope cathodoluminescence imaging of subgrain boundaries, twins and planar deformation features in quartz

NASA Astrophysics Data System (ADS)

Hamers, M. F.; Pennock, G. M.; Drury, M. R.

2017-04-01

The study of deformation features has been of great importance to determine deformation mechanisms in quartz. Relevant microstructures in both growth and deformation processes include dislocations, subgrains, subgrain boundaries, Brazil and Dauphiné twins and planar deformation features (PDFs). Dislocations and twin boundaries are most commonly imaged using a transmission electron microscope (TEM), because these cannot directly be observed using light microscopy, in contrast to PDFs. Here, we show that red-filtered cathodoluminescence imaging in a scanning electron microscope (SEM) is a useful method to visualise subgrain boundaries, Brazil and Dauphiné twin boundaries. Because standard petrographic thin sections can be studied in the SEM, the observed structures can be directly and easily correlated to light microscopy studies. In contrast to TEM preparation methods, SEM techniques are non-destructive to the area of interest on a petrographic thin section.

Accurate predictions of population-level changes in sequence and structural properties of HIV-1 Env using a volatility-controlled diffusion model

PubMed Central

DeLeon, Orlando; Hodis, Hagit; O’Malley, Yunxia; Johnson, Jacklyn; Salimi, Hamid; Zhai, Yinjie; Winter, Elizabeth; Remec, Claire; Eichelberger, Noah; Van Cleave, Brandon; Puliadi, Ramya; Harrington, Robert D.; Stapleton, Jack T.; Haim, Hillel

2017-01-01

The envelope glycoproteins (Envs) of HIV-1 continuously evolve in the host by random mutations and recombination events. The resulting diversity of Env variants circulating in the population and their continuing diversification process limit the efficacy of AIDS vaccines. We examined the historic changes in Env sequence and structural features (measured by integrity of epitopes on the Env trimer) in a geographically defined population in the United States. As expected, many Env features were relatively conserved during the 1980s. From this state, some features diversified whereas others remained conserved across the years. We sought to identify “clues” to predict the observed historic diversification patterns. Comparison of viruses that cocirculate in patients at any given time revealed that each feature of Env (sequence or structural) exists at a defined level of variance. The in-host variance of each feature is highly conserved among individuals but can vary between different HIV-1 clades. We designate this property “volatility” and apply it to model evolution of features as a linear diffusion process that progresses with increasing genetic distance. Volatilities of different features are highly correlated with their divergence in longitudinally monitored patients. Volatilities of features also correlate highly with their population-level diversification. Using volatility indices measured from a small number of patient samples, we accurately predict the population diversity that developed for each feature over the course of 30 years. Amino acid variants that evolved at key antigenic sites are also predicted well. Therefore, small “fluctuations” in feature values measured in isolated patient samples accurately describe their potential for population-level diversification. These tools will likely contribute to the design of population-targeted AIDS vaccines by effectively capturing the diversity of currently circulating strains and addressing properties of variants expected to appear in the future. PMID:28384158

A coordination polymer with unusual structural features from imidazolylbutyric acid and titanium isopropoxide.

PubMed

Czakler, Matthias; Puchberger, Michael; Artner, Christine; Schubert, Ulrich

The coordination polymer [Ti(O i Pr) 3 (OOCCH 2 CH 2 CH 2 C 3 N 2 H 3 )] n was prepared from 4-(imidazol-1-yl)butyric acid and titanium isopropoxide. The structure of the compound is remarkable, as the carboxylate group is coordinated in a chelating manner and no dimerization of the Ti(O i Pr) 3 groups through OR bridges was observed.

3-D Digitization of Stereoscopic Jet-in-Crossflow Vortex Structure Images via Augmented Reality

NASA Astrophysics Data System (ADS)

Sigurdson, Lorenz; Strand, Christopher; Watson, Graeme; Nault, Joshua; Tucker, Ryan

2006-11-01

Stereoscopic images of smoke-laden vortex flows have proven useful for understanding the topology of the embedded 3-D vortex structures. Images from two cameras allow a perception of the 3-D structure via the use of red/blue eye glasses. The human brain has an astonishing capacity to calculate and present to the observer the complex turbulent smoke volume. We have developed a technique whereby a virtual cursor is introduced to the perception, which creates an ``augmented reality.'' The perceived position of this cursor in the 3-D field can be precisely controlled by the observer. It can be brought near a characteristic vortex structure in order to digitally estimate the spatial coordinates of that feature. A calibration procedure accounts for camera positioning. Vortex tubes can be traced and recorded for later or real time supersposition of tube skeleton models. These models can be readily digitally obtained for display in graphics systems to allow complete exploration from any location or perspective. A unique feature of this technology is the use of the human brain to naturally perform the difficult computation of the shape of the translucent smoke volume. Examples are given of application to low velocity ratio and Reynolds number elevated jets-in-crossflow.

Ultra-Widefield Steering-Based Spectral-Domain Optical Coherence Tomography Imaging of the Retinal Periphery.

PubMed

Choudhry, Netan; Golding, John; Manry, Matthew W; Rao, Rajesh C

2016-06-01

To describe the spectral-domain optical coherence tomography (SD OCT) features of peripheral retinal findings using an ultra-widefield (UWF) steering technique to image the retinal periphery. Observational study. A total of 68 patients (68 eyes) with 19 peripheral retinal features. Spectral-domain OCT-based structural features. Nineteen peripheral retinal features, including vortex vein, congenital hypertrophy of the retinal pigment epithelium, pars plana, ora serrata pearl, typical cystoid degeneration (TCD), cystic retinal tuft, meridional fold, lattice and cobblestone degeneration, retinal hole, retinal tear, rhegmatogenous retinal detachment, typical degenerative senile retinoschisis, peripheral laser coagulation scars, ora tooth, cryopexy scars (retinal tear and treated retinoblastoma scar), bone spicules, white without pressure, and peripheral drusen, were identified by peripheral clinical examination. Near-infrared scanning laser ophthalmoscopy images and SD OCT of these entities were registered to UWF color photographs. Spectral-domain OCT resolved structural features of all peripheral findings. Dilated hyporeflective tubular structures within the choroid were observed in the vortex vein. Loss of retinal lamination, neural retinal attenuation, retinal pigment epithelium loss, or hypertrophy was seen in several entities, including congenital hypertrophy of the retinal pigment epithelium, ora serrata pearl, TCD, cystic retinal tuft, meridional fold, lattice, and cobblestone degenerations. Hyporeflective intraretinal spaces, indicating cystoid or schitic fluid, were seen in ora serrata pearl, ora tooth, TCD, cystic retinal tuft, meridional fold, retinal hole, and typical degenerative senile retinoschisis. The vitreoretinal interface, which often consisted of lamellae-like structures of the condensed cortical vitreous near or adherent to the neural retina, appeared clearly in most peripheral findings, confirming its association with many low-risk and vision-threatening pathologies, such as lattice degeneration, meridional folds, retinal breaks, and rhegmatogenous retinal detachments. Ultra-widefield steering-based SD OCT imaging of the retinal periphery is feasible with current commercially available devices and provides detailed anatomic information of the peripheral retina, including benign and pathologic entities, not previously imaged. This imaging technique may deepen our structural understanding of these entities and their potentially associated macular and systemic pathologies, and may influence decision-making in clinical practice, particularly in areas with teleretinal capabilities but poor access to retinal specialists. Copyright © 2016 American Academy of Ophthalmology. Published by Elsevier Inc. All rights reserved.

A modeling analysis program for the JPL table mountain Io sodium cloud data

NASA Technical Reports Server (NTRS)

Smyth, William H.; Goldberg, Bruce A.

1988-01-01

Research in the third and final year of this project is divided into three main areas: (1) completion of data processing and calibration for 34 of the 1981 Region B/C images, selected from the massive JPL sodium cloud data set; (2) identification and examination of the basic features and observed changes in the morphological characteristics of the sodium cloud images; and (3) successful physical interpretation of these basic features and observed changes using the highly developed numerical sodium cloud model at AER. The modeling analysis has led to a number of definite conclusions regarding the local structure of Io's atmosphere, the gas escape mechanism at Io, and the presence of an east-west electric field and a System III longitudinal asymmetry in the plasma torus. Large scale stability, as well as some smaller scale time variability for both the sodium cloud and the structure of the plasma torus over a several year time period are also discussed.

Synthesis and structural property of Si nanosheets connected to Si nanowires using MnCl2/Si powder source

NASA Astrophysics Data System (ADS)

Meng, Erchao; Ueki, Akiko; Meng, Xiang; Suzuki, Hiroaki; Itahara, Hiroshi; Tatsuoka, Hirokazu

2016-08-01

Si nanosheets connected to Si nanowires were synthesized using a MnCl2/Si powder source with an Au catalyst. The synthesis method has benefits in terms of avoiding conventionally used air-sensitive SiH4 or SiCl4. The existence of the Si nanosheets connected to the Si<111> nanowires, like sprouts or leaves with petioles, was observed, and the surface of the nanosheets was Si{111}. The nanosheets were grown in the growth direction of <211> perpendicular to that of the Si nanowires. It was evident from these structural features of the nanosheets that the nanosheets were formed by the twin-plane reentrant-edge mechanism. The feature of the observed lattice fringes, which do not appear for Si bulk crystals, of the Si(111) nanosheets obtained by high resolution transmission electron microscopy was clearly explained due to the extra diffraction spots that arose by the reciprocal lattice streaking effect.

Necroplanetology: Disrupted Planetary Material Transiting WD 1145+017

NASA Astrophysics Data System (ADS)

Manideep Duvvuri, Girish; Redfield, Seth; Veras, Dimitri

2018-06-01

The WD 1145+017 system shows irregular transit features that are consistent with the tidal disruption of differentiated asteroids with bulk densities < 4 g cm-3 and bulk masses < 1021 kg. We use the open-source N-body code REBOUND to simulate this disruption with different internal structures: varying the core volume fraction, mantle/core density ratio, and the presence/absence of a thin low-density crust. We show that these parameters have observationally distinguishable effects on the transit light curve as the asteroid is disrupted and fit the simulation-generated lightcurves to data. We find that an asteroid with a low core fraction, low mantle/density ratio, and without a crust is most consistent with the A1 feature present for multiple weeks circa April 2017. This combination of observations and simulations to study the interior structure and chemistry of exoplanetary bodies via their destruction in action is an early example of necroplanetology, a field that will hopefully grow with the discovery of other systems like WD 1145+017.

Hit to lead account of the discovery of a new class of inhibitors of Pim kinases and crystallographic studies revealing an unusual kinase binding mode.

PubMed

Qian, Kevin; Wang, Lian; Cywin, Charles L; Farmer, Bennett T; Hickey, Eugene; Homon, Carol; Jakes, Scott; Kashem, Mohammed A; Lee, George; Leonard, Scott; Li, Jun; Magboo, Ronald; Mao, Wang; Pack, Edward; Peng, Charlene; Prokopowicz, Anthony; Welzel, Morgan; Wolak, John; Morwick, Tina

2009-04-09

A series of inhibitors of Pim-2 kinase identified by high-throughput screening is described. Details of the hit validation and lead generation process and structure-activity relationship (SAR) studies are presented. Disclosure of an unconventional binding mode for 1, as revealed by X-ray crystallography using the highly homologous Pim-1 protein, is also presented, and observed binding features are shown to correlate with the Pim-2 SAR. While highly selective within the kinase family, the series shows similar potency for both Pim-1 and Pim-2, which was expected on the basis of homology, but unusual in light of reports in the literature documenting a bias for Pim-1. A rationale for these observations based on Pim-1 and Pim-2 K(M(ATP)) values is suggested. Some interesting cross reactivity with casein kinase-2 was also identified, and structural features which may contribute to the association are discussed.

Ultraviolet spectral reflectance of carbonaceous materials

NASA Astrophysics Data System (ADS)

Applin, Daniel M.; Izawa, Matthew R. M.; Cloutis, Edward A.; Gillis-Davis, Jeffrey J.; Pitman, Karly M.; Roush, Ted L.; Hendrix, Amanda R.; Lucey, Paul G.

2018-06-01

A number of planetary spacecraft missions have carried instruments with sensors covering the ultraviolet (UV) wavelength range. However, there exists a general lack of relevant UV reflectance laboratory data to compare against these planetary surface remote sensing observations in order to make confident material identifications. To address this need, we have systematically analyzed reflectance spectra of carbonaceous materials in the 200-500 nm spectral range, and found spectral-compositional-structural relationships that suggest this wavelength region could distinguish between otherwise difficult-to-identify carbon phases. In particular (and by analogy with the infrared spectral region), large changes over short wavelength intervals in the refractive indices associated with the trigonal sp2π-π* transition of carbon can lead to Fresnel peaks and Christiansen-like features in reflectance. Previous studies extending to shorter wavelengths also show that anomalous dispersion caused by the σ-σ* transition associated with both the trigonal sp2 and tetrahedral sp3 sites causes these features below λ = 200 nm. The peak wavelength positions and shapes of π-π* and σ-σ* features contain information on sp3/sp2, structure, crystallinity, and powder grain size. A brief comparison with existing observational data indicates that the carbon fraction of the surface of Mercury is likely amorphous and submicroscopic, as is that on the surface of the martian satellites Phobos and Deimos, and possibly comet 67P/Churyumov-Gerasimenko, while further coordinated observations and laboratory experiments should refine these feature assignments and compositional hypotheses. The new laboratory diffuse reflectance data reported here provide an important new resource for interpreting UV reflectance measurements from planetary surfaces throughout the solar system, and confirm that the UV can be rich in important spectral information.

Building the Peanut: Simulations and Observations of Peanut-shaped Structures and Ansae in Face-on Disk Galaxies

NASA Astrophysics Data System (ADS)

Saha, Kanak; Graham, Alister W.; Rodríguez-Herranz, Isabel

2018-01-01

Peanut/x-shaped features observed in a significant fraction of disk galaxies are thought to have formed from vertically buckled bars. Despite being three-dimensional structures, they are preferentially detected in near edge-on projection. Only a few galaxies are found to have displayed such structures when their disks are relatively face-on—suggesting that either they are generally weak in face-on projection or many may be hidden by the light of their galaxy’s face-on disk. Here, we report on three (collisionless) simulated galaxies displaying peanut-shaped structures when their disks are seen both face-on and edge-on—resembling a three-dimensional peanut or dumbbell. Furthermore, these structures are accompanied by ansae and an outer ring at the end of the bar—as seen in real galaxies such as IC 5240. The same set of quantitative parameters used to measure peanut structures in real galaxies has been determined for the simulated galaxies, and a broad agreement is found. In addition, the peanut length grows in tandem with the bar, and is a maximum at half the length of the bar. Beyond the cutoff of these peanut structures, toward the end of the bar, we discover a new positive/negative feature in the B 6 radial profile associated with the isophotes of the ansae/ring. Our simulated, self-gravitating, three-dimensional peanut structures display cylindrical rotation even in the near-face-on disk projection. In addition, we report on a kinematic pinch in the velocity map along the bar minor axis, matching that seen in the surface density map.

Change of spatial information under rescaling: A case study using multi-resolution image series

NASA Astrophysics Data System (ADS)

Chen, Weirong; Henebry, Geoffrey M.

Spatial structure in imagery depends on a complicated interaction between the observational regime and the types and arrangements of entities within the scene that the image portrays. Although block averaging of pixels has commonly been used to simulate coarser resolution imagery, relatively little attention has been focused on the effects of simple rescaling on spatial structure and the explanation and a possible solution to the problem. Yet, if there are significant differences in spatial variance between rescaled and observed images, it may affect the reliability of retrieved biogeophysical quantities. To investigate these issues, a nested series of high spatial resolution digital imagery was collected at a research site in eastern Nebraska in 2001. An airborne Kodak DCS420IR camera acquired imagery at three altitudes, yielding nominal spatial resolutions ranging from 0.187 m to 1 m. The red and near infrared (NIR) bands of the co-registered image series were normalized using pseudo-invariant features, and the normalized difference vegetation index (NDVI) was calculated. Plots of grain sorghum planted in orthogonal crop row orientations were extracted from the image series. The finest spatial resolution data were then rescaled by averaging blocks of pixels to produce a rescaled image series that closely matched the spatial resolution of the observed image series. Spatial structures of the observed and rescaled image series were characterized using semivariogram analysis. Results for NDVI and its component bands show, as expected, that decreasing spatial resolution leads to decreasing spatial variability and increasing spatial dependence. However, compared to the observed data, the rescaled images contain more persistent spatial structure that exhibits limited variation in both spatial dependence and spatial heterogeneity. Rescaling via simple block averaging fails to consider the effect of scene object shape and extent on spatial information. As the features portrayed by pixels are equally weighted regardless of the shape and extent of the underlying scene objects, the rescaled image retains more of the original spatial information than would occur through direct observation at a coarser sensor spatial resolution. In contrast, for the observed images, due to the effect of the modulation transfer function (MTF) of the imaging system, high frequency features like edges are blurred or lost as the pixel size increases, resulting in greater variation in spatial structure. Successive applications of a low-pass spatial convolution filter are shown to mimic a MTF. Accordingly, it is recommended that such a procedure be applied prior to rescaling by simple block averaging, if insufficient image metadata exist to replicate the net MTF of the imaging system, as might be expected in land cover change analysis studies using historical imagery.

Experimental shock deformation in zircon: a transmission electron microscopic study

NASA Astrophysics Data System (ADS)

Leroux, H.; Reimold, W. U.; Koeberl, C.; Hornemann, U.; Doukhan, J.-C.

1999-06-01

In recent years, apparently shock-induced and, thus, impact-characteristic microdeformations, in the form of planar microdeformation features and so-called strawberry (granular) texture, have been observed in zircons in rocks from confirmed impact structures and from the K/ T boundary. The nature of the planar microdeformations in this mineral is, however, still unknown, and critical information is needed regarding the shock pressure range in which these deformation effects are produced. We experimentally shock deformed two series of thin zircon (ZrSiO 4) target plates, cut perpendicular to the c-axis, at shock pressures of 20, 40, and 60 GPa. The recovered samples were characterized by optical and scanning electron microscopy. In addition, one sample series was studied by transmission electron microscopy (TEM). Microdeformation effects observed at 20 GPa include pervasive micro-cleavage and dislocation patterns. Plastic deformation is indicated by a high density of straight dislocations in glide configuration. The dominant glide systems are <100>{010}. Micro-cleavages, induced by shear stresses during the compression stage, occur mostly in the {100} planes. The large density of dislocations at crack tips shows that plastic deformation was initiated by the micro-cracking processs. At 40 GPa, the sample was partly transformed from the zircon (z) to a scheelite (CaWO 4)-type (s) structure. Planar deformation features (PDFs) containing an amorphous phase of zircon composition are present in the not yet transformed zircon relics. The phase with scheelite structure, initiated in the {100} planes of zircon, consists of thin (0.1 to several μm) bands that crosscut the zircon matrix. The phase transformation is displacive (martensitic) and can be related by {100} z // {112} s and [001] z // <110> s. The scheelite structure phase is densely twinned, with twins in the (112) plane. The 60-GPa sample consists completely of the scheelite structure phase. Crosscutting and displacing relationships between twins and PDFs demonstrate that PDFs are formed in the zircon structure, i.e., before the phase transformation to the scheelite structure occurred, most likely at the shock front. Crystallographic orientations of optically visible planar features in zircon, in comparison with orientations of planar defects at the TEM scale, suggest that the optically visible features are more likely planar microfractures than PDFs.

Improving link prediction in complex networks by adaptively exploiting multiple structural features of networks

NASA Astrophysics Data System (ADS)

Ma, Chuang; Bao, Zhong-Kui; Zhang, Hai-Feng

2017-10-01

So far, many network-structure-based link prediction methods have been proposed. However, these methods only highlight one or two structural features of networks, and then use the methods to predict missing links in different networks. The performances of these existing methods are not always satisfied in all cases since each network has its unique underlying structural features. In this paper, by analyzing different real networks, we find that the structural features of different networks are remarkably different. In particular, even in the same network, their inner structural features are utterly different. Therefore, more structural features should be considered. However, owing to the remarkably different structural features, the contributions of different features are hard to be given in advance. Inspired by these facts, an adaptive fusion model regarding link prediction is proposed to incorporate multiple structural features. In the model, a logistic function combing multiple structural features is defined, then the weight of each feature in the logistic function is adaptively determined by exploiting the known structure information. Last, we use the "learnt" logistic function to predict the connection probabilities of missing links. According to our experimental results, we find that the performance of our adaptive fusion model is better than many similarity indices.

The Atmosphere of Uranus as Imaged with Keck Adaptive Optics

NASA Astrophysics Data System (ADS)

Hammel, H. B.; de Pater, I.; Gibbard, S. G.; Lockwood, G. W.; Rages, K.

2004-12-01

Adaptive optics imaging of Uranus was obtained with NIRC2 on the Keck II 10-meter telescope in October 2003 and July 2004 through J, H, and K' filters. Dozens of discrete features were detected in the atmosphere of Uranus. We report the first measurements of winds northward of +43 deg, the first direct measurement of equatorial winds, and the highest wind velocity seen yet on Uranus. At northern mid-latitudes, the winds may have accelerated when compared to earlier HST and Keck observations; southern wind speeds have not changed since Voyager measurements in 1986. The equator of Uranus exhibits a subtle wave structure, with diffuse patches roughly every 30 degs in longitude. There is no sign of a northern "polar collar" as is seen in the south, but a number of discrete features seen at the "expected" latitudes may signal its early stages of development. The largest cloud features on Uranus show complex structure extending over tens of degrees. On 4 July 2004, we detected a southern hemispheric cloud feature on Uranus at K', the first detection of a southern feature at or longward of 2 microns. H images showed an extended structure whose condensed core was co-located with the K'-bright feature. The core exhibited marked brightness variation, fading within just a few days. The initial brightness at K' indicates that the core's scattering particles reached altitudes above the 1-bar level, with the extended H feature residing below 1.1 bars. The core's rapid disappearance at K' indicates dynamical processes in the local vertical aerosol structure. HBH acknowledges support from NASA grants NAG5-11961 and NAG5-10451. IdP acknowledges support from NSF and the Technology Center for Adaptive Optics, managed by UCSC under cooperative agreement No. AST-9876783. SGG's work was performed under the auspices of the U.S. DoE National Nuclear Security Administration by the UC, LLNL under contract No. W-7405-Eng-48.

Magnetic Signature of the Lunar South Pole-Aitken Basin: Character, Origin, and Age

NASA Technical Reports Server (NTRS)

Purucker, Michael E.; Head, James W., III; Wilson, Lionel

2012-01-01

A new magnetic map of the Moon, based on Lunar Prospector (LP) magnetometer observations, sheds light on the origin of the South Pole-Aitken Basin (SPA), the largest and oldest of the recognized lunar basins. A set of WNW-trending linear to arcuate magnetic features, evident in both the radial and scalar observations, covers much of a 1000 km wide region centered on the NW portion of SPA. The source bodies are not at the surface because the magnetic features show no first-order correspondence to any surface topographic or structural feature. Patchy mare basalts of possible late Imbrianage are emplaced within SPA and are inferred to have been emplaced through dikes, directly from mantle sources. We infer that the magnetic features represent dike swarms that served as feeders for these mare basalts, as evident from the location of the Thomson/ Mare Ingenii, Van de Graaff, and Leeuwenhoek mare basalts on the two largest magnetic features in the region. Modeling suggests that the dike zone is between 25 and 50 km wide at the surface, and dike magnetization contrasts are in the range of 0.2 A/m. We theorize that the basaltic dikes were emplaced in the lunar crust when a long-lived dynamo was active. Based on pressure, temperature, and stress conditions prevalent in the lunar crust, dikes are expected to be a dominantly subsurface phenomenon, consistent with the observations reported here.

Line structures in the X-ray spectra of Cygnus X-2 observed with Exosat

NASA Technical Reports Server (NTRS)

Freeman, P. E.; Kahn, S. M.; Chiappetti, L.; Tanzi, E. G.; Ciapi, A.; Maraschi, L.; Treves, A.; Branduardi-Raymont, E. G.; Ercan, E. N.

1990-01-01

Cygnus X-2 was observed with Exosat at five phases of a single orbital cycle in September of 1983. The results of spectral fits of the LE + ME (Argon) data are summarized in terms of a superposition of thermal bremsstrahlung and blackbody components. During the first observation, a grating spectrum was obtained, and this is described in some detail. The GSPC data are used to investigate the presence of iron features and their behavior during dips.

GeoSciML version 3: A GML application for geologic information

NASA Astrophysics Data System (ADS)

International Union of Geological Sciences., I. C.; Richard, S. M.

2011-12-01

After 2 years of testing and development, XML schema for GeoSciML version 3 are now ready for application deployment. GeoSciML draws from many geoscience data modelling efforts to establish a common suite of feature types to represent information associated with geologic maps (materials, structures, and geologic units) and observations including structure data, samples, and chemical analyses. After extensive testing and use case analysis, in December 2008 the CGI Interoperability Working Group (IWG) released GeoSciML 2.0 as an application schema for basic geological information. GeoSciML 2.0 is in use to deliver geologic data by the OneGeology Europe portal, the Geological Survey of Canada Groundwater Information Network (wet GIN), and the Auscope Mineral Resources portal. GeoSciML to version 3.0 is updated to OGC Geography Markup Language v3.2, re-engineered patterns for association of element values with controlled vocabulary concepts, incorporation of ISO19156 Observation and Measurement constructs for representing numeric and categorical values and for representing analytical data, incorporation of EarthResourceML to represent mineral occurrences and mines, incorporation of the GeoTime model to represent GSSP and stratigraphic time scale, and refactoring of the GeoSciML namespace to follow emerging ISO practices for decoupling of dependencies between standardized namespaces. These changes will make it easier for data providers to link to standard vocabulary and registry services. The depth and breadth of GeoSciML remains largely unchanged, covering the representation of geologic units, earth materials and geologic structures. ISO19156 elements and patterns are used to represent sampling features such as boreholes and rock samples, as well as geochemical and geochronologic measurements. Geologic structures include shear displacement structures (brittle faults and ductile shears), contacts, folds, foliations, lineations and structures with no preferred orientation (e.g. 'miarolitic cavities'). The Earth material package allows for the description of both individual components, such as minerals, and compound materials, such as rocks or unconsolidated materials. Provision is made for alteration, weathering, metamorphism, particle geometry, fabric, and petrophysical descriptions. Mapped features describe the shape of the geological features using standard GML geometries, such as polygons, lines, points or 3D volumes. Geological events provide the age, process and environment of formation of geological features. The Earth Resource section includes features to represent mineral occurrences and mines and associated human activities independently. This addition allows description of resources and reserves that can comply with national and internationally accepted reporting codes. GeoSciML v3 is under consideration as the data model for INSPIRE annex 2 geologic reporting in Europe.

Folding and Fracturing of Rocks: the background

NASA Astrophysics Data System (ADS)

Ramsay, John G.

2017-04-01

This book was generated by structural geology teaching classes at Imperial College. I was appointed lecturer during 1957 and worked together with Dr Gilbert Wilson teaching basic structural geology at B.Sc level. I became convinced that the subject, being essentially based on geometric field observations, required a firm mathematical basis for its future development. In particular it seemed to me to require a very sound understanding of stress and strain. My field experience suggested that a knowledge of two- and three-demensional strain was critical in understanding natural tectonic processes. I found a rich confirmation for this in early publications of deformed fossils, oolitic limestones and spotted slates made by several geologists around the beginning of the 20th century (Sorby, Philips, Haughton, Harker) often using surprisingly sophisticated mathematical methods. These methods were discussed and elaborated in Folding and Fracturing of Rocks in a practical way. The geometric features of folds were related to folding mechanisms and the fold related small scale structures such as cleavage, schistosity and lineation explained in terms of rock strain. My work in the Scottish Highlands had shown just how repeated fold superposition could produce very complex geometric features, while further work in other localities suggested that such geometric complications are common in many orogenic zones. From the development of structural geological studies over the past decades it seems that the readers of this book have found many of the ideas set out are still of practical application. The mapping of these outcrop-scale structures should be emphasised in all field studies because they can be seen as ''fingerprints'' of regional scale tectonic processes. My own understanding of structural geology has been inspired by field work and I am of the opinion that future progress in understanding will be likewise based on careful observation and measurement of the features of naturally deformed rocks mathematically analysed using the concepts of three-dimensional continuum mechanics.

Characterization of Novel Plasmonic, Photonic, and Semiconductor Microstructures

NASA Astrophysics Data System (ADS)

Sears, Jasmine Soria

The fields of telecommunications and optoelectronics are under constant pressure to shrink devices and reduce power consumption. Micro-scale photonic and plasmonic structures can trap light and enhance the brightness of active emitters; thus, these types of structures are promising avenues to accomplishing the goals of miniaturization and efficiency. A deeper understanding of specific structures is important in order to gauge their suitability for specific applications. In this dissertation, two types of microstructures are explored: one-dimensional silicon photonic crystals and self-assembled indium islands. This dissertation will provide novel characterization of these structures and a description of how to utilize or compensate for the observed features. A photonic crystal can act as a tiny resonator for certain wavelengths, making it a promising structure for applications that require extremely small lasers. However, because of silicon’s indirect bandgap, a silicon photonic crystal cavity would require the addition of an active emitter to function as a light source. Attempts to incorporate erbium into these cavities, and the observation of an unusual coupling phenomenon, will be discussed. Self-assembled indium islands are plasmonic structures that can be grown via molecular beam epitaxy. In theory, these islands should be pure indium nanoantennas on top of a smooth gallium arsenide substrate. In practice, the component materials are less segregated than predicted, giving rise to unexpected hollow dome shapes and a sub-surface indium layer. Although these features were not an intended result of indium island growth, they provide information regarding the island formation process and potentially contribute additional applications.

Mega-rings Surrounding Timber Mountain Nested Calderas, Geophysical Anomalies: Rethinking Structure and Volcanism Near Yucca Mountain (YM), Nevada

NASA Astrophysics Data System (ADS)

Tynan, M. C.; Smith, K. D.; Savino, J. M.; Vogt, T. J.

2004-12-01

Observed regional mega-rings define a zone ˜80-100 km in diameter centered on Timber Mountain (TM). The mega-rings encompass known smaller rhyolitic nested Miocene calderas ( ˜11-15 my, < 10 km circular to elliptical small "rings") and later stage basaltic features (< 11 my, small flows, cones, dikes) in the Southwest Nevada Volcanic Field. Miocene rhyolitic calderas cluster within the central area and on the outer margin of the interpreted larger mega-ring complex. The mega-ring interpretation is consistent with observations of regional physiography, tomographic images, seismicity patterns, and structural relationships. Mega-rings consist of arcuate faulted blocks with deformation (some remain active structures) patterns showing a genetic relationship to the TM volcanic system; they appear to be spatially associated and temporally correlated with Miocene volcanism and two geophysically identified crustal/upper mantle features. A 50+ km diameter pipe-like high velocity anomaly extends from crustal depth to over 200 km beneath TM (evidence for 400km depth to NE). The pipe is located between two ˜100 km sub-parallel N/S linear trends of small-magnitude earthquake activity, one extending through the central NV Test Site, and a second located near Beatty, NV. Neither the kinematics nor relational mechanism of 100km seismically active N/S linear zones, pipe, and mega-rings are understood. Interpreted mega-rings are: 1) Similar in size to larger terrestrial volcanic complexes (e.g., Yellowstone, Indonesia's Toba system); 2) Located in the region of structural transition from the Mohave block to the south, N/S Basin and Range features to the north, Walker Lane to the NW, and the Las Vegas Valley shear zone to the SE; 3) Associated with the two seismically active zones (similar to other caldera fault-bounded sags), the mantle high velocity feature, and possibly a regional bouguer gravity anomaly; 4) Nearly coincident with area hydrologic basins and sub-basins; 5) Similar to features described from terrestrial and planetary caldera-collapse studies, and as modeled in laboratory scaled investigations (ice melt, balloon/sand). Post Mid-Miocene basalts commonly occur within or adjacent to the older rhyolitic caldera moats; other basaltic material occurs marginal to both the outer rings of the interpreted mega-ring system and high velocity pipe. The YM repository may be situated in an isolated structural setting within the mega-ring system; basaltic materials are absent in the block for over 11my for geologic reasons. The mega-ring model may better explain YM area structures (Highway 95 fault), tectonism, and volcanism. Coincident physiographic, geologic, and geophysical features associated with the mega-rings feature, and temporal characteristics of regional seismicity and volcanism suggest the need to critically re-assess regional scale and YM tectonic, seismotectonic, and volcanic models.

Thermodynamic properties of antiferromagnetic ordered states of π -d interacting systems of κ -(BETS) 2Fe X4(X =Br ,Cl )

NASA Astrophysics Data System (ADS)

Fukuoka, Shuhei; Yamashita, Satoshi; Nakazawa, Yasuhiro; Yamamoto, Takashi; Fujiwara, Hideki; Shirahata, Takashi; Takahashi, Kazuko

2016-06-01

The results are presented for systematic heat capacity measurements of π-d interacting systems of κ -(BETS) 2Fe Br4 and κ -(BETS) 2FeC l4 [BETS = bis(ethylenedithio)tetraselenafulvalene] performed under in-plane magnetic fields. We observed sharp thermal anomalies at 2.47 K for κ -(BETS) 2FeB r4 and at 0.47 K for κ -(BETS) 2FeC l4 at 0 T that are associated with antiferromagnetic transitions of the 3 d electrons in the anion layers. From analyses of the magnetic heat capacity data, we indicate that the two compounds show unconventional thermodynamic behaviors inherent in the π-d interacting layered system. In the case of κ -(BETS) 2FeB r4 , a small hump structure was observed in the magnetic heat capacity below the transition temperature when a magnetic field was applied parallel to the a axis. In the case of κ -(BETS) 2FeC l4 , a similar hump structure was observed at 0 T that remained in the data with magnetic fields applied parallel to the a axis. We demonstrate that the temperature dependencies of the magnetic heat capacities scale well by normalizing the temperatures with dominant one-dimensional direct interactions (Jdd/kB) of each compound. The field dependencies of the transition temperatures and the hump structures are elucidated in one simple magnetic field vs temperature (H -T ) phase diagram. These results indicate that the thermodynamic features of both κ-type BETS salts are essentially equivalent, and the observed hump structures are derived from the one-dimensional Jdd interaction characters, which are still influential for magnetic features even in the long-range magnetic ordered states.

Analysis of underlying causes of inter-expert disagreement in retinopathy of prematurity diagnosis. Application of machine learning principles.

PubMed

Ataer-Cansizoglu, E; Kalpathy-Cramer, J; You, S; Keck, K; Erdogmus, D; Chiang, M F

2015-01-01

Inter-expert variability in image-based clinical diagnosis has been demonstrated in many diseases including retinopathy of prematurity (ROP), which is a disease affecting low birth weight infants and is a major cause of childhood blindness. In order to better understand the underlying causes of variability among experts, we propose a method to quantify the variability of expert decisions and analyze the relationship between expert diagnoses and features computed from the images. Identification of these features is relevant for development of computer-based decision support systems and educational systems in ROP, and these methods may be applicable to other diseases where inter-expert variability is observed. The experiments were carried out on a dataset of 34 retinal images, each with diagnoses provided independently by 22 experts. Analysis was performed using concepts of Mutual Information (MI) and Kernel Density Estimation. A large set of structural features (a total of 66) were extracted from retinal images. Feature selection was utilized to identify the most important features that correlated to actual clinical decisions by the 22 study experts. The best three features for each observer were selected by an exhaustive search on all possible feature subsets and considering joint MI as a relevance criterion. We also compared our results with the results of Cohen's Kappa [36] as an inter-rater reliability measure. The results demonstrate that a group of observers (17 among 22) decide consistently with each other. Mean and second central moment of arteriolar tortuosity is among the reasons of disagreement between this group and the rest of the observers, meaning that the group of experts consider amount of tortuosity as well as the variation of tortuosity in the image. Given a set of image-based features, the proposed analysis method can identify critical image-based features that lead to expert agreement and disagreement in diagnosis of ROP. Although tree-based features and various statistics such as central moment are not popular in the literature, our results suggest that they are important for diagnosis.

Morphology Of A Hot Prominence Cavity Observed with Hinode/XRT and SDO/AIA

NASA Technical Reports Server (NTRS)

Weber, Mark A.; Reeves, K. K.; Gibson, S. E.; Kucera, T. A.

2012-01-01

Prominence cavities appear as circularly shaped voids in coronal emission over polarity inversion lines where a prominence channel is straddling the solar limb. The presence of chromospheric material suspended at coronal altitudes is a common but not necessary feature within these cavities. These voids are observed to change shape as a prominence feature rotates around the limb. We use a morphological model projected in cross-sections to fit the cavity emission in Hinode/XRT passbands, and then apply temperature diagnostics to XRT and SDO/AIA data to investigate the thermal structure. We find significant evidence that the prominence cavity is hotter than the corona immediately outside the cavity boundary. This investigation follows upon "Thermal Properties of A Solar Coronal Cavity Observed with the X-ray Telescope on Hinode" by Reeves et al., 2012, ApJ, in press.

First XMM-Newton Observations of an Isolated Neutron Star: RXJ0720.4-3125

NASA Technical Reports Server (NTRS)

Paerels, Frits; Mori, Kaya; Motch, Christian; Haberl, Frank; Zavlin, Vyacheslav E.; Zane, Silvia; Ramsay, Gavin; Cropper, Mark

2000-01-01

We present the high resolution spectrum of the isolated neutron star RXJ0720.4-3125, obtained with the Reflection Grating Spectrometer on XMM-Newton, complemented with the broad band spectrum observed with the EPIC PN camera. The spectrum appears smooth, with no evidence for strong photospheric absorption or emission features. We briefly discuss the implications of our failure to detect structure in the spectrum.

Structurally detailed coarse-grained model for Sec-facilitated co-translational protein translocation and membrane integration

PubMed Central

Miller, Thomas F.

2017-01-01

We present a coarse-grained simulation model that is capable of simulating the minute-timescale dynamics of protein translocation and membrane integration via the Sec translocon, while retaining sufficient chemical and structural detail to capture many of the sequence-specific interactions that drive these processes. The model includes accurate geometric representations of the ribosome and Sec translocon, obtained directly from experimental structures, and interactions parameterized from nearly 200 μs of residue-based coarse-grained molecular dynamics simulations. A protocol for mapping amino-acid sequences to coarse-grained beads enables the direct simulation of trajectories for the co-translational insertion of arbitrary polypeptide sequences into the Sec translocon. The model reproduces experimentally observed features of membrane protein integration, including the efficiency with which polypeptide domains integrate into the membrane, the variation in integration efficiency upon single amino-acid mutations, and the orientation of transmembrane domains. The central advantage of the model is that it connects sequence-level protein features to biological observables and timescales, enabling direct simulation for the mechanistic analysis of co-translational integration and for the engineering of membrane proteins with enhanced membrane integration efficiency. PMID:28328943

Ground-based observation of the cyclic nature and temporal variability of planetary-scale UV features at the Venus cloud top level

NASA Astrophysics Data System (ADS)

Imai, Masataka; Takahashi, Yukihiro; Watanabe, Makoto; Kouyama, Toru; Watanabe, Shigeto; Gouda, Shuhei; Gouda, Yuya

2016-11-01

A planetary-scale bright and dark UV feature, known as the ;Y-feature,; rotates around Venus with a period of 4-5 days and has been long-time interpreted as planetary waves. When assuming this, its rotation period and spatial structure might help to understand the propagation of the planetary-scale waves and find out their role in the acceleration-deceleration of the zonal wind speed, which is essential for understanding the super-rotation of the planet. The rotation period of the UV feature varied over the course of observation by the Pioneer Venus orbiter. However, in previous explorations of Venus such as Pioneer Venus and Venus Express, the spacecraft were operated in nearly fixed inertial space. As a result, the periodicity variations on sub-yearly timescales (one Venusian year is ∼224 Earth days) were obscured by the limitations of continuous dayside observations. We newly conducted six periods of ground-based Venus imaging observations at 365 nm from mid-August 2013 to the end of June 2014. Each observation period spanned over half or one month, enabling long-term monitoring of Venus' atmosphere above the equator region. Distributions of the relative brightness were obtained from the equatorial (EQ) to mid-latitudinal regions in both hemispheres, and from the cyclical variations of these distributions we deduced the rotation periods of the UV features of the cloud tops brightness. The relative brightness exhibited periods of 5.2 and 3.5 days above 90% of significance. The relative intensities of these two significant components also seemed subject to temporal variations. Although the 3.5-day component considered persists throughout the observation periods, its dominance over the longer period varied in a cyclic fashion. The prevailing first significant mode seems to change from 5.2-day waves to 3.5-day waves in about nine months, which is clearly inconsistent with the Venusian year. Clear periodic perturbations, indicating stability of the planetary-scale UV-feature, were observed only in the presence of single longer or shorter periodic waves. During the transition periods of dominant-wave changing, the amplitude of the relative brightness was largely changed. This can be explained by the deformation of the Y-shaped UV feature as observed by Pioneer Venus in 1979.

Low-angle normal faulting and isostatic response in the Gulf of Suez: Evidence from seismic interpretation and geometric reconstruction

NASA Technical Reports Server (NTRS)

Perry, S. K.; Schamel, S.

1985-01-01

Tectonic extension within continental crust creates a variety of major features best classed as extensional orogens. These features have come under increasing attention in recent years, with the welding of field observation and theoretical concepts. Most recent advances have come from the Basin and Range Province of the southwestern United States and from the North Sea. Application of these geometric and isostatic concepts, in combination with seismic interpretation, to the southern Gulf of Suez, an active extensional orogen, allows generation of detailed structural maps and geometrically balanced sections which suggest a regional structural model. Geometric models which should prove to be a valuable adjunct to numerical and thermal models for the rifting process are discussed.

LANDSAT image studies as applied to petroleum exploration in Kenya

NASA Technical Reports Server (NTRS)

Miller, J. B.

1975-01-01

The Chevron-Kenya oil license, acquired in 1972, covers an area at the north end of the Lamu Embayment. Immediately after acquisition, a photogeologic study of the area was made followed by a short field inspection. An interpretation of LANDSAT-1 images as a separate attempt to improve geological knowledge was completed. The method used in the image study, the multispectral characteristics of rock units and terrain, and the observed anomalous features as seen in the LANDSAT imagery are described. It was found that the study helped to define the relationship of the Lamu Embayment and its internal structure with surrounding regional features, such as the East Africa rifting, the Rudolf Trough, the Bur Acaba structural ridge, and the Ogaden Basin.

Suppression in high-order above-threshold ionization: destructive interference from quantum orbits

NASA Astrophysics Data System (ADS)

Lai, Xuan Yang; Quan, Wei; Yu, Shao Gang; Huang, Yi Yi; Liu, Xiao Jun

2018-05-01

We experimentally study the above-threshold ionization (ATI) spectra of noble gas argon in an intense laser field and focus on a novel suppression structure in the high-order ATI (HATI) spectra. It is found that, when a well-documented resonancelike enhancement feature appears in the HATI spectra, a significant suppression structure is followed in a higher energy region of the spectra. The observation is well reproduced by a numerical solution of the time-dependent Schrödinger equation. In terms of quantum-orbit theory, the observed suppression structure can be ascribed to the destructive interference from longer quantum orbits. Furthermore, an intrinsic relation between the ionization suppression and the ionization enhancement in the HATI spectra is well established.

Numerical investigation of separated nozzle flows

NASA Technical Reports Server (NTRS)

Chen, C. L.; Chakravarthy, S. R.; Hung, C. M.

1994-01-01

A numerical study of axisymmetric overexpanded nozzle is presented. The flow structure of the startup and throttle-down processes are examined. During the impulsive startup process, observed flow features include the Mach disk, separation shock, Mach stem, vortex core, contact surface, slip stream, initial shock front, and shocklet. Also the movement of the Mach disk is not monotonical in the downstream direction. For a range of pressure ratios, hysteresis phenomenon occurs; different solutions were obtained depending on different processes. Three types of flow structures were observed. The location of separation point and the lower end turning point of hysteresis are closely predicted. A high peak of pressure is associated with the nozzle flow reattachment. The reversed vortical structure and affects engine performance.

Modeling Far-UV Fluorescent Emission Features of Warm Molecular Hydrogen in the Inner Regions of Protoplanetary Disks

NASA Astrophysics Data System (ADS)

Hoadley, Keri; France, Kevin

2015-01-01

Probing the surviving molecular gas within the inner regions of protoplanetary disks (PPDs) around T Tauri stars (1 - 10 Myr) provides insight into the conditions in which planet formation and migration occurs while the gas disk is still present. We model observed far ultraviolet (FUV) molecular hydrogen (H₂) fluorescent emission lines that originate within the inner regions (< 10 AU) of 9 well-studied Classic T Tauri stars, using the Hubble Space Telescope Cosmic Origins Spectrograph (COS), to explore the physical structure of the molecular disk at different PPD dust evolutionary stages. We created a 2D radiative transfer model that estimates the density and temperature distributions of warm, inner radial H₂ (T > 1500 K) with a set of 6 free parameters and produces a data cube of expected emission line profiles that describe the physical structure of the inner molecular disk atmosphere. By comparing the modeled emission lines with COS H₂ fluorescence emission features, we estimate the physical structure of the molecular disk atmosphere for each target with the set of free parameters that best replicate the observed lines. First results suggest that, for all dust evolutionary stages of disks considered, ground-state H₂ populations are described by a roughly constant temperature T(H₂) = 2500 +/- 1000 K. Possible evolution of the density structure of the H₂ atmosphere between intact and depleting dust disks may be distinguishable, but large errors in the inferred best-fit parameter sets prevent us from making this conclusion. Further improvements to the modeling framework and statistical comparison in determining the best-fit model-to-data parameter sets are ongoing, beginning with improvements to the radiative transfer model and use of up-to-date HI Lyman α absorption optical depths (see McJunkin in posters) to better estimate disk structural parameters. Once improvements are implemented, we will investigate the possible presence of a molecular wind component in the observed H₂ fluorescence features by determining blue-shifted flux residuals in the data after best-fit model-to-data comparisons are complete.

Characterizing trabecular bone structure for assessing vertebral fracture risk on volumetric quantitative computed tomography

NASA Astrophysics Data System (ADS)

Nagarajan, Mahesh B.; Checefsky, Walter A.; Abidin, Anas Z.; Tsai, Halley; Wang, Xixi; Hobbs, Susan K.; Bauer, Jan S.; Baum, Thomas; Wismüller, Axel

2015-03-01

While the proximal femur is preferred for measuring bone mineral density (BMD) in fracture risk estimation, the introduction of volumetric quantitative computed tomography has revealed stronger associations between BMD and spinal fracture status. In this study, we propose to capture properties of trabecular bone structure in spinal vertebrae with advanced second-order statistical features for purposes of fracture risk assessment. For this purpose, axial multi-detector CT (MDCT) images were acquired from 28 spinal vertebrae specimens using a whole-body 256-row CT scanner with a dedicated calibration phantom. A semi-automated method was used to annotate the trabecular compartment in the central vertebral slice with a circular region of interest (ROI) to exclude cortical bone; pixels within were converted to values indicative of BMD. Six second-order statistical features derived from gray-level co-occurrence matrices (GLCM) and the mean BMD within the ROI were then extracted and used in conjunction with a generalized radial basis functions (GRBF) neural network to predict the failure load of the specimens; true failure load was measured through biomechanical testing. Prediction performance was evaluated with a root-mean-square error (RMSE) metric. The best prediction performance was observed with GLCM feature `correlation' (RMSE = 1.02 ± 0.18), which significantly outperformed all other GLCM features (p < 0.01). GLCM feature correlation also significantly outperformed MDCTmeasured mean BMD (RMSE = 1.11 ± 0.17) (p< 10-4). These results suggest that biomechanical strength prediction in spinal vertebrae can be significantly improved through characterization of trabecular bone structure with GLCM-derived texture features.

Complex crater formation: Insights from combining observations of shock pressure distribution with numerical models at the West Clearwater Lake impact structure

NASA Astrophysics Data System (ADS)

Rae, A. S. P.; Collins, G. S.; Grieve, R. A. F.; Osinski, G. R.; Morgan, J. V.

2017-07-01

Large impact structures have complex morphologies, with zones of structural uplift that can be expressed topographically as central peaks and/or peak rings internal to the crater rim. The formation of these structures requires transient strength reduction in the target material and one of the proposed mechanisms to explain this behavior is acoustic fluidization. Here, samples of shock-metamorphosed quartz-bearing lithologies at the West Clearwater Lake impact structure, Canada, are used to estimate the maximum recorded shock pressures in three dimensions across the crater. These measurements demonstrate that the currently observed distribution of shock metamorphism is strongly controlled by the formation of the structural uplift. The distribution of peak shock pressures, together with apparent crater morphology and geological observations, is compared with numerical impact simulations to constrain parameters used in the block-model implementation of acoustic fluidization. The numerical simulations produce craters that are consistent with morphological and geological observations. The results show that the regeneration of acoustic energy must be an important feature of acoustic fluidization in crater collapse, and should be included in future implementations. Based on the comparison between observational data and impact simulations, we conclude that the West Clearwater Lake structure had an original rim (final crater) diameter of 35-40 km and has since experienced up to 2 km of differential erosion.

A New Multiscale Model for the Madden-Julian Oscillation.

NASA Astrophysics Data System (ADS)

Biello, Joseph A.; Majda, Andrew J.

2005-06-01

A multiscale model of the MJO is developed here that accounts, in a simplified fashion, for both the upscale transfer from synoptic to planetary scales of momentum and temperature from wave trains of thermally driven equatorial synoptic-scale circulations in a moving convective envelope as well as direct mean heating on planetary scales. This model involves idealized thermally driven congestus synoptic-scale fluctuations in the eastern part of the moving wave envelope and convective superclusters in the western part of the envelope. The model self-consistently reproduces qualitatively many of the detailed structural features of the planetary circulation in the observations of the MJO, including the vertical structure in both the westerly onset region and the strong westerly wind burst region, as well as the horizontal quadrupole planetary vortex structure. The westerly midlevel inflow in the strong westerly region and the quadrupole vortex are largely produced in the model by the upscale transport of momentum to the planetary scales, while the midlevel easterly jet in the westerly onset region is substantially strengthened by this process. The role of wave trains of tilted organized synoptic-scale circulations is crucial for this fidelity with observations. The appeal of the multiscale models developed below is their firm mathematical underpinnings, simplicity, and analytic tractability while remaining self-consistent with many of the features of the observational record.

The Equivalence of Precession Phenomena in Metric Theories of Gravity

NASA Technical Reports Server (NTRS)

Krisher, Timothy P.

1997-01-01

The requirement of general covariance imparts to metric theories of gravity, such as general relavity, important structural features. A precise mathematical form results, ensuring that computation of observable physical effects in the theory gives the same answers independently of the chosen system of coordinates.

Understanding the Structure of Children's Emotion-Regulation Strategies

ERIC Educational Resources Information Center

Callear, Angela; Harvey, Shane Trevor; Bimler, David

2017-01-01

Emotion regulation is a central feature in human emotional development. However, measures based on children's observable emotion regulation behaviors are largely absent. An inventory of children's emotion regulation strategies was developed from current measures and four focus group discussions with experts in child behavior and emotion. From…

Accreditation of Predoctoral Dental Education: Clinical Outcomes Assessment.

ERIC Educational Resources Information Center

Boyd, Marcia A.; And Others

1991-01-01

The Curriculum Outcomes Review and Evaluation system of outcomes assessment for accreditation of Canadian dental faculties is described. Features include chart reviews; evaluation of diagnosis and treatment planning and case presentation for a student sample; structured clinical observation; presite visit survey; and solicitation of feedback from…

Distinct Morphology of Human T-Cell Leukemia Virus Type 1-Like Particles

PubMed Central

Maldonado, José O.; Cao, Sheng; Zhang, Wei; Mansky, Louis M.

2016-01-01

The Gag polyprotein is the main retroviral structural protein and is essential for the assembly and release of virus particles. In this study, we have analyzed the morphology and Gag stoichiometry of human T-cell leukemia virus type 1 (HTLV-1)-like particles and authentic, mature HTLV-1 particles by using cryogenic transmission electron microscopy (cryo-TEM) and scanning transmission electron microscopy (STEM). HTLV-1-like particles mimicked the morphology of immature authentic HTLV-1 virions. Importantly, we have observed for the first time that the morphology of these virus-like particles (VLPs) has the unique local feature of a flat Gag lattice that does not follow the curvature of the viral membrane, resulting in an enlarged distance between the Gag lattice and the viral membrane. Other morphological features that have been previously observed with other retroviruses include: (1) a Gag lattice with multiple discontinuities; (2) membrane regions associated with the Gag lattice that exhibited a string of bead-like densities at the inner leaflet; and (3) an arrangement of the Gag lattice resembling a railroad track. Measurement of the average size and mass of VLPs and authentic HTLV-1 particles suggested a consistent range of size and Gag copy numbers in these two groups of particles. The unique local flat Gag lattice morphological feature observed suggests that HTLV-1 Gag could be arranged in a lattice structure that is distinct from that of other retroviruses characterized to date. PMID:27187442

Using the Properties of Broad Absorption Line Quasars to Illuminate Quasar Structure

NASA Astrophysics Data System (ADS)

Yong, Suk Yee; King, Anthea L.; Webster, Rachel L.; Bate, Nicholas F.; O'Dowd, Matthew J.; Labrie, Kathleen

2018-06-01

A key to understanding quasar unification paradigms is the emission properties of broad absorption line quasars (BALQs). The fact that only a small fraction of quasar spectra exhibit deep absorption troughs blueward of the broad permitted emission lines provides a crucial clue to the structure of quasar emitting regions. To learn whether it is possible to discriminate between the BALQ and non-BALQ populations given the observed spectral properties of a quasar, we employ two approaches: one based on statistical methods and the other supervised machine learning classification, applied to quasar samples from the Sloan Digital Sky Survey. The features explored include continuum and emission line properties, in particular the absolute magnitude, redshift, spectral index, line width, asymmetry, strength, and relative velocity offsets of high-ionisation C IV λ1549 and low-ionisation Mg II λ2798 lines. We consider a complete population of quasars, and assume that the statistical distributions of properties represent all angles where the quasar is viewed without obscuration. The distributions of the BALQ and non-BALQ sample properties show few significant differences. None of the observed continuum and emission line features are capable of differentiating between the two samples. Most published narrow disk-wind models are inconsistent with these observations, and an alternative disk-wind model is proposed. The key feature of the proposed model is a disk-wind filling a wide opening angle with multiple radial streams of dense clumps.

Feature-oriented regional modeling and simulations in the Gulf of Maine and Georges Bank

NASA Astrophysics Data System (ADS)

Gangopadhyay, Avijit; Robinson, Allan R.; Haley, Patrick J.; Leslie, Wayne G.; Lozano, Carlos J.; Bisagni, James J.; Yu, Zhitao

2003-03-01

The multiscale synoptic circulation system in the Gulf of Maine and Georges Bank (GOMGB) region is presented using a feature-oriented approach. Prevalent synoptic circulation structures, or 'features', are identified from previous observational studies. These features include the buoyancy-driven Maine Coastal Current, the Georges Bank anticyclonic frontal circulation system, the basin-scale cyclonic gyres (Jordan, Georges and Wilkinson), the deep inflow through the Northeast Channel (NEC), the shallow outflow via the Great South Channel (GSC), and the shelf-slope front (SSF). Their synoptic water-mass ( T- S) structures are characterized and parameterized in a generalized formulation to develop temperature-salinity feature models. A synoptic initialization scheme for feature-oriented regional modeling and simulation (FORMS) of the circulation in the coastal-to-deep region of the GOMGB system is then developed. First, the temperature and salinity feature-model profiles are placed on a regional circulation template and then objectively analyzed with appropriate background climatology in the coastal region. Furthermore, these fields are melded with adjacent deep-ocean regional circulation (Gulf Stream Meander and Ring region) along and across the SSF. These initialization fields are then used for dynamical simulations via the primitive equation model. Simulation results are analyzed to calibrate the multiparameter feature-oriented modeling system. Experimental short-term synoptic simulations are presented for multiple resolutions in different regions with and without atmospheric forcing. The presented 'generic and portable' methodology demonstrates the potential of applying similar FORMS in many other regions of the Global Coastal Ocean.

A scanning acoustic microscope discriminates cancer cells in fluid

NASA Astrophysics Data System (ADS)

Miura, Katsutoshi; Yamamoto, Seiji

2015-10-01

Scanning acoustic microscopy (SAM) discriminates lesions in sections by assessing the speed of sound (SOS) or attenuation of sound (AOS) through tissues within a few minutes without staining; however, its clinical use in cytological diagnosis is unknown. We applied a thin layer preparation method to observe benign and malignant effusions using SAM. Although SAM is inferior in detecting nuclear features than light microscopy, it can differentiate malignant from benign cells using the higher SOS and AOS values and large irregular cell clusters that are typical features of carcinomas. Moreover, each single malignant cell exhibits characteristic cytoplasmic features such as a large size, irregular borders and secretory or cytoskeletal content. By adjusting the observation range, malignant cells are differentiated from benign cells easily using SAM. Subtle changes in the functional and structural heterogeneity of tumour cells were pursuable with a different digital data of SAM. SAM can be a useful tool for screening malignant cells in effusions before light microscopic observation. Higher AOS values in malignant cells compared with those of benign cells support the feasibility of a novel sonodynamic therapy for malignant effusions.

Fine flow structures in the transition region small-scale loops

NASA Astrophysics Data System (ADS)

Yan, L.; Peter, H.; He, J.; Wei, Y.

2016-12-01

The observation and model have suggested that the transition region EUV emission from the quiet sun region is contributed by very small scale loops which have not been resolved. Recently, the observation from IRIS has revealed that this kind of small scale loops. Based on the high resolution spectral and imaging observation from IRIS, much more detail work needs to be done to reveal the fine flow features in this kind of loop to help us understand the loop heating. Here, we present a detail statistical study of the spatial and temporal evolution of Si IV line profiles of small scale loops and report the spectral features: there is a transition from blue (red) wing enhancement dominant to red (blue) wing enhancement dominant along the cross-section of the loop, which is independent of time. This feature appears as the loop appear and disappear as the loop un-visible. This is probably the signature of helical flow along the loop. The result suggests that the brightening of this kind of loop is probably due to the current dissipation heating in the twisted magnetic field flux tube.

Topography of closed depressions, scarps, and grabens in the north Tharsis region of Mars: Implications for shallow crustal discontinuities and Graben formation

NASA Technical Reports Server (NTRS)

Davis, P. A.; Tanaka, Kenneth L.; Golombek, M. P.

1995-01-01

Using Viking Orbiter images, detailed photoclinometric profiles were obtained across 10 irregular depressions, 32 fretted fractures, 40 troughs and pits, 124 solitary scarps, and 370 simple grabens in the north Tharsis region of Mars. These data allow inferences to be made on the shallow crustal structure of this region. The frequency modes of measured scarp heights correspond with previous general thickness estimates of the heavily cratered and rigded plains units. The depths of the flat-floored irregular depressions (55-175 m), fretted fractures (85-890 m), and troughs and pits (60-1620 m) are also similar to scarp heights (thicknesses) of the geologic units in which these depressions occur, which suggests that the depths of these flat-floored features were controlled by erosional base levels created by lithologic contacts. Although the features have a similar age, both their depths and their observed local structural control increase in the order listed above, which suggests that the more advanced stages of associated fracturing facilitated the development of these depressions by increasing permeability. If a ground-ice zone is a factor in development of these features, as has been suggested, our observation that the depths of these features decrease with increasing latitude suggests that either the thickness of the ground-ice zone does not increase poleward or the depths of the depressions were controlled by the top of the ground-ice zone whose depth may decrease with latitude.

The effect of alkaline pretreatment methods on cellulose structure and accessibility

DOE PAGES

Bali, Garima; Meng, Xianzhi; Deneff, Jacob I.; ...

2014-11-24

The effects of different alkaline pretreatments on cellulose structural features and accessibility are compared and correlated with the enzymatic hydrolysis of Populus. The pretreatments are shown to modify polysaccharides and lignin content to enhance the accessibility for cellulase enzymes. The highest increase in the cellulose accessibility was observed in dilute sodium hydroxide, followed by methods using ammonia soaking and lime (Ca(OH) 2). The biggest increase of cellulose accessibility occurs during the first 10 min of pretreatment, with further increases at a slower rate as severity increases. Low temperature ammonia soaking at longer residence times dissolved a major portion of hemicellulosemore » and exhibited higher cellulose accessibility than high temperature soaking. Moreover, the most significant reduction of degree of polymerization (DP) occurred for dilute sodium hydroxide (NaOH) and ammonia pretreated Populus samples. The study thus identifies important cellulose structural features and relevant parameters related to biomass recalcitrance.« less

First principles pseudopotential calculation of electron energy loss near edge structures of lattice imperfections.

PubMed

Mizoguchi, Teruyasu; Matsunaga, Katsuyuki; Tochigi, Eita; Ikuhara, Yuichi

2012-01-01

Theoretical calculations of electron energy loss near edge structures (ELNES) of lattice imperfections, particularly a Ni(111)/ZrO₂(111) heterointerface and an Al₂O₃ stacking fault on the {1100} plane, are performed using a first principles pseudopotential method. The present calculation can qualitatively reproduce spectral features as well as chemical shifts in experiment by employing a special pseudopotential designed for the excited atom with a core-hole. From the calculation, spectral changes observed in O-K ELNES from a Ni/ZrO₂ interface can be attributable to interfacial oxygen-Ni interactions. In the O-K ELNES of Al₂O₃ stacking faults, theoretical calculation suggests that the spectral feature reflects coordination environment and chemical bonding. Powerful combinations of ELNES with a pseudopotential method used to investigate the atomic and electronic structures of lattice imperfections are demonstrated. Copyright © 2011 Elsevier Ltd. All rights reserved.

Unexpected features of the dark proteome.

PubMed

Perdigão, Nelson; Heinrich, Julian; Stolte, Christian; Sabir, Kenneth S; Buckley, Michael J; Tabor, Bruce; Signal, Beth; Gloss, Brian S; Hammang, Christopher J; Rost, Burkhard; Schafferhans, Andrea; O'Donoghue, Seán I

2015-12-29

We surveyed the "dark" proteome-that is, regions of proteins never observed by experimental structure determination and inaccessible to homology modeling. For 546,000 Swiss-Prot proteins, we found that 44-54% of the proteome in eukaryotes and viruses was dark, compared with only ∼14% in archaea and bacteria. Surprisingly, most of the dark proteome could not be accounted for by conventional explanations, such as intrinsic disorder or transmembrane regions. Nearly half of the dark proteome comprised dark proteins, in which the entire sequence lacked similarity to any known structure. Dark proteins fulfill a wide variety of functions, but a subset showed distinct and largely unexpected features, such as association with secretion, specific tissues, the endoplasmic reticulum, disulfide bonding, and proteolytic cleavage. Dark proteins also had short sequence length, low evolutionary reuse, and few known interactions with other proteins. These results suggest new research directions in structural and computational biology.

Brain modularity controls the critical behavior of spontaneous activity.

PubMed

Russo, R; Herrmann, H J; de Arcangelis, L

2014-03-13

The human brain exhibits a complex structure made of scale-free highly connected modules loosely interconnected by weaker links to form a small-world network. These features appear in healthy patients whereas neurological diseases often modify this structure. An important open question concerns the role of brain modularity in sustaining the critical behaviour of spontaneous activity. Here we analyse the neuronal activity of a model, successful in reproducing on non-modular networks the scaling behaviour observed in experimental data, on a modular network implementing the main statistical features measured in human brain. We show that on a modular network, regardless the strength of the synaptic connections or the modular size and number, activity is never fully scale-free. Neuronal avalanches can invade different modules which results in an activity depression, hindering further avalanche propagation. Critical behaviour is solely recovered if inter-module connections are added, modifying the modular into a more random structure.

Elemental, morphological, structural, optical, and magnetic properties of erbium doped ZnO nanoparticles

NASA Astrophysics Data System (ADS)

Poornaprakash, B.; Chalapathi, U.; Purusottam Reddy, B.; Prabhakar Vattikuti, S. V.; Siva Pratap Reddy, M.; Park, Si-Hyun

2018-03-01

The sensible tuning of the structural, optical, and magnetic properties of ZnO nanoparticles (NPs) with suitable doping can enhance their applicability in diverse fields. In this study, we synthesized ZnO NPs with Er (0-4 at%) doping and their elemental, structural, optical, and magnetic properties were studied. Both field emission scanning electron microscopy (FESEM) and high resolution transmission electron microscopy (HRTEM) studies of the suspensions consist of hexagonal shaped NPs. All the prepared NPs exhibited hexagonal phase as demonstrated by powder x-ray diffraction studies. A blue shift was observed in the Er doped ZnO NPs compared to pure ZnO, indicating the increased optical bandgap. Vibrating sample magnetometer studies exhibited the pure ZnO NPs was typical diamagnetic feature whereas all the Er doped ZnO NPs were paramagnetic feature at 300 K. This is the first paramagnetic report on Er doped ZnO NPs.

Unexpected features of the dark proteome

PubMed Central

Perdigão, Nelson; Heinrich, Julian; Stolte, Christian; Sabir, Kenneth S.; Buckley, Michael J.; Tabor, Bruce; Signal, Beth; Gloss, Brian S.; Hammang, Christopher J.; Rost, Burkhard; Schafferhans, Andrea

2015-01-01

We surveyed the “dark” proteome–that is, regions of proteins never observed by experimental structure determination and inaccessible to homology modeling. For 546,000 Swiss-Prot proteins, we found that 44–54% of the proteome in eukaryotes and viruses was dark, compared with only ∼14% in archaea and bacteria. Surprisingly, most of the dark proteome could not be accounted for by conventional explanations, such as intrinsic disorder or transmembrane regions. Nearly half of the dark proteome comprised dark proteins, in which the entire sequence lacked similarity to any known structure. Dark proteins fulfill a wide variety of functions, but a subset showed distinct and largely unexpected features, such as association with secretion, specific tissues, the endoplasmic reticulum, disulfide bonding, and proteolytic cleavage. Dark proteins also had short sequence length, low evolutionary reuse, and few known interactions with other proteins. These results suggest new research directions in structural and computational biology. PMID:26578815

Modeling Line Emission from Structures Seen at High Resolution in the Nebulae m1 and M16

NASA Astrophysics Data System (ADS)

Sankrit, Ravi

1998-12-01

Narrow band images of the Crab Nebula supernova remnant and of the Eagle Nebula H II region taken with the Hubble Space Telescope (HST) show the ionization structure of the emitting gas in unprecedented detail because of the high spatial resolution. The physics of the emission processes-shock excited emission and photoionized emission-is well understood. Sophisticated numerical codes are used to model the ionization structure and emission observed in these images. It is found that the thin skin of material around the Crab synchrotron nebula visible in (O III) λ5007 emission is best explained as the cooling region behind a shock driven by the synchrotron nebula into a surrounding remnant of freely expanding ejecta. Shock models, with parameters derived from independently known properties of the Crab, explain the observed spectrum of the skin while photoionization models fail to explain the observed strength of high ionization lines such as C IV λ1549. This result is clear evidence that the synchrotron nebula is interacting with an extended remnant of ejecta, which in turn has significant implications for the structure and evolution of the Crab. At HST resolution, it is seen that low ionization emission, from lines such as (O I) λ6300, is concentrated in sharp structures while high ionization emission (from (O III) λ5007) is much more diffuse. Individual filaments are found to lie along a sequence of ionization structure ranging from features in which all lines are concentrated in the same compact volume through features with low ionization cores surrounded by high ionization envelopes. Photoionization models of cylindrically symmetrical filaments with varying 'core-halo' density profiles can match the observed variation in the filament structure in the Crab. A photoionization model of a uniform low density medium matches the extended diffuse component which dominates the high ionization emission. It is found that detailed knowledge of the filament structures present in an aperture is needed to correctly interpret ground-based spectra of the Crab. The images also show that many filament cores coincide with dust extinction features, which suggest that the dust to gas mass ratio may be up to an order of magnitude higher than is typical in the interstellar medium. Nebula show the interface between the ionized gas and the molecular cloud in tangency against the background of the ionized cavity which constitutes the H II region. A photoionization model using a density profile for the photoevaporative flow that is expected at such an interface is successful at explaining the observed emission profiles of Hα λ6563, (S II) λλ6716,6731, and (O III) λ5007. The ionizing flux is well constrained by the Hα emission and the sulphur abundance is constrained by the peak of the (S II) emission. A grid of models using the same density profiles shows how various emission properties depend on the ionizing continuum shape, ionizing flux and elemental abundances.

Current Sheet Structures Observed by the TESIS EUV Telescope during a Flux Rope Eruption on the Sun

NASA Astrophysics Data System (ADS)

Reva, A. A.; Ulyanov, A. S.; Kuzin, S. V.

2016-11-01

We use the TESIS EUV telescope to study the current sheet signatures observed during flux rope eruption. The special feature of the TESIS telescope was its ability to image the solar corona up to a distance of 2 {R}⊙ from the Sun’s center in the Fe 171 Å line. The Fe 171 Å line emission illuminates the magnetic field lines, and the TESIS images reveal the coronal magnetic structure at high altitudes. The analyzed coronal mass ejection (CME) had a core with a spiral—flux rope—structure. The spiral shape indicates that the flux rope radius varied along its length. The flux rope had a complex temperature structure: cold legs (70,000 K, observed in He 304 Å line) and a hotter core (0.7 MK, observed in Fe 171 Å line). Such a structure contradicts the common assumption that the CME core is a cold prominence. When the CME impulsively accelerated, a dark double Y-structure appeared below the flux rope. The Y-structure timing, location, and morphology agree with the previously performed MHD simulations of the current sheet. We interpreted the Y-structure as a hot envelope of the current sheet and hot reconnection outflows. The Y-structure had a thickness of 6.0 Mm. Its length increased over time from 79 Mm to more than 411 Mm.

Age structure is critical to the population dynamics and survival of honeybee colonies.

PubMed

Betti, M I; Wahl, L M; Zamir, M

2016-11-01

Age structure is an important feature of the division of labour within honeybee colonies, but its effects on colony dynamics have rarely been explored. We present a model of a honeybee colony that incorporates this key feature, and use this model to explore the effects of both winter and disease on the fate of the colony. The model offers a novel explanation for the frequently observed phenomenon of 'spring dwindle', which emerges as a natural consequence of the age-structured dynamics. Furthermore, the results indicate that a model taking age structure into account markedly affects the predicted timing and severity of disease within a bee colony. The timing of the onset of disease with respect to the changing seasons may also have a substantial impact on the fate of a honeybee colony. Finally, simulations predict that an infection may persist in a honeybee colony over several years, with effects that compound over time. Thus, the ultimate collapse of the colony may be the result of events several years past.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wu, Huixian; Wacker, Daniel; Mileni, Mauro

Opioid receptors mediate the actions of endogenous and exogenous opioids on many physiological processes, including the regulation of pain, respiratory drive, mood, and - in the case of {kappa}-opioid receptor ({kappa}-OR) - dysphoria and psychotomimesis. Here we report the crystal structure of the human {kappa}-OR in complex with the selective antagonist JDTic, arranged in parallel dimers, at 2.9 {angstrom} resolution. The structure reveals important features of the ligand-binding pocket that contribute to the high affinity and subtype selectivity of JDTic for the human {kappa}-OR. Modelling of other important {kappa}-OR-selective ligands, including the morphinan-derived antagonists norbinaltorphimine and 5'-guanidinonaltrindole, and the diterpenemore » agonist salvinorin A analogue RB-64, reveals both common and distinct features for binding these diverse chemotypes. Analysis of site-directed mutagenesis and ligand structure-activity relationships confirms the interactions observed in the crystal structure, thereby providing a molecular explanation for {kappa}-OR subtype selectivity, and essential insights for the design of compounds with new pharmacological properties targeting the human {kappa}-OR.« less

Rocket observations of electron-density irregularities in the equatorial ionosphere below 200 km

NASA Technical Reports Server (NTRS)

Klaus, D. E.; Smith, L. G.

1978-01-01

Nike Apache rockets carring instrumentation to measure electron density and its fine structure in the equatorial ionosphere were launched from Chilca, Peru in May and June 1975. The fine structure experiment and the data reduction system are described. Results obtained from this system are presented and compared with those obtained by VHF radar and from other rocket studies. A description of the equatorial ionosphere and its features is also presented.

Environment and initial state engineered dynamics of quantum and classical correlations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Cheng-Zhi, E-mail: czczwang@outlook.com; Li, Chun-Xian; Guo, Yu

Based on an open exactly solvable system coupled to an environment with nontrivial spectral density, we connect the features of quantum and classical correlations with some features of the environment, initial states of the system, and the presence of initial system–environment correlations. Some interesting features not revealed before are observed by changing the structure of environment, the initial states of system, and the presence of initial system–environment correlations. The main results are as follows. (1) Quantum correlations exhibit temporary freezing and permanent freezing even at high temperature of the environment, for which the necessary and sufficient conditions are given bymore » three propositions. (2) Quantum correlations display a transition from temporary freezing to permanent freezing by changing the structure of environment. (3) Quantum correlations can be enhanced all the time, for which the condition is put forward. (4) The one-to-one dependency relationship between all kinds of dynamic behaviors of quantum correlations and the initial states of the system as well as environment structure is established. (5) In the presence of initial system–environment correlations, quantum correlations under local environment exhibit temporary multi-freezing phenomenon. While under global environment they oscillate, revive, and damp, an explanation for which is given. - Highlights: • Various interesting behaviors of quantum and classical correlations are observed in an open exactly solvable model. • The important effects of the bath structure on quantum and classical correlations are revealed. • The one-to-one correspondence between the type of dynamical behavior of quantum discord and the initial state is given. • Quantum correlations are given in the presence of initial qubits–bath correlations.« less

Accretion in Saturn's F Ring

NASA Astrophysics Data System (ADS)

Meinke, B. K.; Esposito, L. W.; Stewart, G.

2012-12-01

Saturn's F ring is the solar system's principal natural laboratory for direct observation of accretion and disruption processes. The ring resides in the Roche zone, where tidal disruption competes with self-gravity, which allows us to observe the lifecycle of moonlets. Just as nearby moons create structure at the B ring edge (Esposito et al. 2012) and the Keeler gap (Murray 2007), the F ring "shepherding" moons Prometheus and Pandora stir up ring material and create observably changing structures on timescales of days to decades. In fact, Beurle et al (2010) show that Prometheus makes it possible for "distended, yet gravitationally coherent clumps" to form in the F ring, and Barbara and Esposito (2002) predicted a population of ~1 km bodies in the ring. In addition to the observations over the last three decades, the Cassini Ultraviolet Imaging Spectrograph (UVIS) has detected 27 statistically significant features in 101 occultations by Saturn's F ring since July 2004. Seventeen of those 27 features are associated with clumps of ring material. Two features are opaque in occultation, which makes them candidates for solid objects, which we refer to as Moonlets. The 15 other features partially block stellar signal for 22 m to just over 3.7 km along the radial expanse of the occultation. Upon visual inspection of the occultation profile, these features resemble Icicles, thus we will refer to them as such here. The density enhancements responsible for such signal attenuations are likely due to transient clumping of material, evidence that aggregations of material are ubiquitous in the F ring. Our lengthy observing campaign reveals that Icicles are likely transient clumps, while Moonlets are possible solid objects. Optical depth is an indicator of clumping because more-densely aggregated material blocks more light; therefore, it is natural to imagine moonlets as later evolutionary stage of icicle, when looser clumps of material compact to form a feature that appears opaque in occultation. We suggest that Icicles may evolve into Moonlets, which are an order of magnitude less abundant in UVIS observations. Motivated by the observations and previous models, I develop a more rigorous model of the evolution of aggregates in Saturn's F ring via tidally-modified accretion. I apply the model to the F ring for bodies of constant density undergoing binary collisions. Because the locations of the UVIS-observed clump-associated features are weakly correlated to the location of Prometheus (Esposito et al. 2012) and images show material stirred up after Prometheus passage (Murray et al. 2008), we develop an additional production term describing "enhanced growth" beyond sticking of hard spheres in binary collisions. In the scenario we devise, Prometheus creates high-density regions in which larger bodies efficiently sweep up smaller bodies. Including a term for this growth mechanism in the numerical model results in the modeled size distribution evolving to a state consistent with observations. Together, the observations and model tell a story of how moonlets are made. Prometheus may be the agent responsible for moonlet growth, a complicated and rare process in the F ring. This can explain how accretion gets the upper hand in forming F ring aggregates. Growth and destruction may be cyclical on a longer time scale. This research was supported by the Cassini project.

In Silico Analysis of the Structural and Biochemical Features of the NMD Factor UPF1 in Ustilago maydis.

PubMed

Martínez-Montiel, Nancy; Morales-Lara, Laura; Hernández-Pérez, Julio M; Martínez-Contreras, Rebeca D

2016-01-01

The molecular mechanisms regulating the accuracy of gene expression are still not fully understood. Among these mechanisms, Nonsense-mediated Decay (NMD) is a quality control process that detects post-transcriptionally abnormal transcripts and leads them to degradation. The UPF1 protein lays at the heart of NMD as shown by several structural and functional features reported for this factor mainly for Homo sapiens and Saccharomyces cerevisiae. This process is highly conserved in eukaryotes but functional diversity can be observed in various species. Ustilago maydis is a basidiomycete and the best-known smut, which has become a model to study molecular and cellular eukaryotic mechanisms. In this study, we performed in silico analysis to investigate the structural and biochemical properties of the putative UPF1 homolog in Ustilago maydis. The putative homolog for UPF1 was recognized in the annotated genome for the basidiomycete, exhibiting 66% identity with its human counterpart at the protein level. The known structural and functional domains characteristic of UPF1 homologs were also found. Based on the crystal structures available for UPF1, we constructed different three-dimensional models for umUPF1 in order to analyze the secondary and tertiary structural features of this factor. Using these models, we studied the spatial arrangement of umUPF1 and its capability to interact with UPF2. Moreover, we identified the critical amino acids that mediate the interaction of umUPF1 with UPF2, ATP, RNA and with UPF1 itself. Mutating these amino acids in silico showed an important effect over the native structure. Finally, we performed molecular dynamic simulations for UPF1 proteins from H. sapiens and U. maydis and the results obtained show a similar behavior and physicochemical properties for the protein in both organisms. Overall, our results indicate that the putative UPF1 identified in U. maydis shows a very similar sequence, structural organization, mechanical stability, physicochemical properties and spatial organization in comparison to the NMD factor depicted for Homo sapiens. These observations strongly support the notion that human and fungal UPF1 could perform equivalent biological activities.

Algorithm-Dependent Generalization Bounds for Multi-Task Learning.

PubMed

Liu, Tongliang; Tao, Dacheng; Song, Mingli; Maybank, Stephen J

2017-02-01

Often, tasks are collected for multi-task learning (MTL) because they share similar feature structures. Based on this observation, in this paper, we present novel algorithm-dependent generalization bounds for MTL by exploiting the notion of algorithmic stability. We focus on the performance of one particular task and the average performance over multiple tasks by analyzing the generalization ability of a common parameter that is shared in MTL. When focusing on one particular task, with the help of a mild assumption on the feature structures, we interpret the function of the other tasks as a regularizer that produces a specific inductive bias. The algorithm for learning the common parameter, as well as the predictor, is thereby uniformly stable with respect to the domain of the particular task and has a generalization bound with a fast convergence rate of order O(1/n), where n is the sample size of the particular task. When focusing on the average performance over multiple tasks, we prove that a similar inductive bias exists under certain conditions on the feature structures. Thus, the corresponding algorithm for learning the common parameter is also uniformly stable with respect to the domains of the multiple tasks, and its generalization bound is of the order O(1/T), where T is the number of tasks. These theoretical analyses naturally show that the similarity of feature structures in MTL will lead to specific regularizations for predicting, which enables the learning algorithms to generalize fast and correctly from a few examples.

Quantitative Susceptibility Mapping using Structural Feature based Collaborative Reconstruction (SFCR) in the Human Brain

PubMed Central

Cai, Congbo; Chen, Zhong; van Zijl, Peter C.M.

2017-01-01

The reconstruction of MR quantitative susceptibility mapping (QSM) from local phase measurements is an ill posed inverse problem and different regularization strategies incorporating a priori information extracted from magnitude and phase images have been proposed. However, the anatomy observed in magnitude and phase images does not always coincide spatially with that in susceptibility maps, which could give erroneous estimation in the reconstructed susceptibility map. In this paper, we develop a structural feature based collaborative reconstruction (SFCR) method for QSM including both magnitude and susceptibility based information. The SFCR algorithm is composed of two consecutive steps corresponding to complementary reconstruction models, each with a structural feature based l1 norm constraint and a voxel fidelity based l2 norm constraint, which allows both the structure edges and tiny features to be recovered, whereas the noise and artifacts could be reduced. In the M-step, the initial susceptibility map is reconstructed by employing a k-space based compressed sensing model incorporating magnitude prior. In the S-step, the susceptibility map is fitted in spatial domain using weighted constraints derived from the initial susceptibility map from the M-step. Simulations and in vivo human experiments at 7T MRI show that the SFCR method provides high quality susceptibility maps with improved RMSE and MSSIM. Finally, the susceptibility values of deep gray matter are analyzed in multiple head positions, with the supine position most approximate to the gold standard COSMOS result. PMID:27019480

The evolution of void-filled cosmological structures

NASA Technical Reports Server (NTRS)

Regos, Eniko; Geller, Margaret J.

1991-01-01

1D, 2D, and 3D simulations are used here to investigate the salient features in the evolution of void-filled cosmological structures in universes with arbitrary values of Omega. It is found that the growth of a void as a function of time decreases significantly at the time corresponding to Omega = 0.5. In models constructed in 2D and 3D, suitable initial conditions lead to cellular structure with faceted voids similar to those observed in redshift surveys. Matter compressed to planes flows more rapidly toward condensations at the intersections than would be expected for spherical infall. The peculiar streaming velocities for void diameters of 5000 km/s should be observable. The simulations provide a more physical basis and dynamics for the bubbly and Voronois tesselation models used to derive statistical properties of cellular large-scale structure.

Molecular clouds and the large-scale structure of the galaxy

NASA Technical Reports Server (NTRS)

Thaddeus, Patrick; Stacy, J. Gregory

1990-01-01

The application of molecular radio astronomy to the study of the large-scale structure of the Galaxy is reviewed and the distribution and characteristic properties of the Galactic population of Giant Molecular Clouds (GMCs), derived primarily from analysis of the Columbia CO survey, and their relation to tracers of Population 1 and major spiral features are described. The properties of the local molecular interstellar gas are summarized. The CO observing programs currently underway with the Center for Astrophysics 1.2 m radio telescope are described, with an emphasis on projects relevant to future comparison with high-energy gamma-ray observations. Several areas are discussed in which high-energy gamma-ray observations by the EGRET (Energetic Gamma-Ray Experiment Telescope) experiment aboard the Gamma Ray Observatory will directly complement radio studies of the Milky Way, with the prospect of significant progress on fundamental issues related to the structure and content of the Galaxy.

Subsurface failure in spherical bodies. A formation scenario for linear troughs on Vesta’s surface

DOE PAGES

Stickle, Angela M.; Schultz, P. H.; Crawford, D. A.

2014-10-13

Many asteroids in the Solar System exhibit unusual, linear features on their surface. The Dawn mission recently observed two sets of linear features on the surface of the asteroid 4 Vesta. Geologic observations indicate that these features are related to the two large impact basins at the south pole of Vesta, though no specific mechanism of origin has been determined. Furthermore, the orientation of the features is offset from the center of the basins. Experimental and numerical results reveal that the offset angle is a natural consequence of oblique impacts into a spherical target. We demonstrate that a set ofmore » shear planes develops in the subsurface of the body opposite to the point of first contact. Moreover, these subsurface failure zones then propagate to the surface under combined tensile-shear stress fields after the impact to create sets of approximately linear faults on the surface. Comparison between the orientation of damage structures in the laboratory and failure regions within Vesta can be used to constrain impact parameters (e.g., the approximate impact point and likely impact trajectory).« less

Gravitational Instabilities in a Protosolar-like Disc

NASA Astrophysics Data System (ADS)

Evans, Mark Graham

2018-02-01

This thesis presents a study of protoplanetary discs around young, low mass protostars. Such discs are believed to be massive enough to develop gravitational instabilities, which subsequently form spiral structures. The dynamical and chemical evolutions of a protosolar-like, gravitationally unstable disc are explored and the spiral structure in the disc is found to shock-heat material. This affects the chemical composition via enhanced desorption rates and endothermic reaction rates and through global mixing of the disc. As a result, the gravitational instability in the model disc leads to transient and permanent changes in the disc chemistry, and also provides a chemically-rich midplane in contrast to simulations of more evolved discs. Secondly, radiative transfer calculations are performed for the dust continuum, and model-tailored grid construction is found to improve the accuracy of the resultant flux images. Continuum observations of the model disc are synthesised and the spiral structure (driven by the gravitational instability) is shown to be readily detectable with ALMA across a range of frequencies, disc inclinations and dust opacities. The derivation of disc mass from the observed flux densities is explored but the method commonly utilised is found to be unreliable and underestimate the disc mass. Therefore, it is concluded that gravitational instabilities could be retrospectively validated in discs previously thought not massive enough to be self-gravitating. Finally, radiative transfer calculations are performed for molecular line transitions. Methods for improving the accuracy of line flux images are explored and the validity of assuming local thermodynamic equilibrium is assessed. Observations of the line fluxes are synthesised without noise and the spiral structure is found to be traced to an extent by all transitions considered, which is not necessarily congruent with the underlying distribution of the molecular species. The disc is seen in absorption in all transitions considered, due to the global mixing of the disc, which suggests absorption features could be a signature of gravitational instability in young protoplanetary discs. The sensitivities required to detect flux originating in spiral features are determined and it is found that a dedicated observation with ALMA should be capable of spatially resolving spiral structure in a Class 0 disc. Whether the spiral structure can be also be determined from spectral features is explored, which is shown to only be reliable with PV diagrams of nearly edge-on discs. The derivation of protostellar mass from PV diagrams is also explored and found to most likely be unreliable for gravitationally unstable discs.

Strong nonadditivity as a key structure-activity relationship feature: distinguishing structural changes from assay artifacts.

PubMed

Kramer, Christian; Fuchs, Julian E; Liedl, Klaus R

2015-03-23

Nonadditivity in protein-ligand affinity data represents highly instructive structure-activity relationship (SAR) features that indicate structural changes and have the potential to guide rational drug design. At the same time, nonadditivity is a challenge for both basic SAR analysis as well as many ligand-based data analysis techniques such as Free-Wilson Analysis and Matched Molecular Pair analysis, since linear substituent contribution models inherently assume additivity and thus do not work in such cases. While structural causes for nonadditivity have been analyzed anecdotally, no systematic approaches to interpret and use nonadditivity prospectively have been developed yet. In this contribution, we lay the statistical framework for systematic analysis of nonadditivity in a SAR series. First, we develop a general metric to quantify nonadditivity. Then, we demonstrate the non-negligible impact of experimental uncertainty that creates apparent nonadditivity, and we introduce techniques to handle experimental uncertainty. Finally, we analyze public SAR data sets for strong nonadditivity and use recourse to the original publications and available X-ray structures to find structural explanations for the nonadditivity observed. We find that all cases of strong nonadditivity (ΔΔpKi and ΔΔpIC50 > 2.0 log units) with sufficient structural information to generate reasonable hypothesis involve changes in binding mode. With the appropriate statistical basis, nonadditivity analysis offers a variety of new attempts for various areas in computer-aided drug design, including the validation of scoring functions and free energy perturbation approaches, binding pocket classification, and novel features in SAR analysis tools.

Fast-moving features in the debris disk around AU Microscopii.

PubMed

Boccaletti, Anthony; Thalmann, Christian; Lagrange, Anne-Marie; Janson, Markus; Augereau, Jean-Charles; Schneider, Glenn; Milli, Julien; Grady, Carol; Debes, John; Langlois, Maud; Mouillet, David; Henning, Thomas; Dominik, Carsten; Maire, Anne-Lise; Beuzit, Jean-Luc; Carson, Joseph; Dohlen, Kjetil; Engler, Natalia; Feldt, Markus; Fusco, Thierry; Ginski, Christian; Girard, Julien H; Hines, Dean; Kasper, Markus; Mawet, Dimitri; Ménard, François; Meyer, Michael R; Moutou, Claire; Olofsson, Johan; Rodigas, Timothy; Sauvage, Jean-Francois; Schlieder, Joshua; Schmid, Hans Martin; Turatto, Massimo; Udry, Stephane; Vakili, Farrokh; Vigan, Arthur; Wahhaj, Zahed; Wisniewski, John

2015-10-08

In the 1980s, excess infrared emission was discovered around main-sequence stars; subsequent direct-imaging observations revealed orbiting disks of cold dust to be the source. These 'debris disks' were thought to be by-products of planet formation because they often exhibited morphological and brightness asymmetries that may result from gravitational perturbation by planets. This was proved to be true for the β Pictoris system, in which the known planet generates an observable warp in the disk. The nearby, young, unusually active late-type star AU Microscopii hosts a well-studied edge-on debris disk; earlier observations in the visible and near-infrared found asymmetric localized structures in the form of intensity variations along the midplane of the disk beyond a distance of 20 astronomical units. Here we report high-contrast imaging that reveals a series of five large-scale features in the southeast side of the disk, at projected separations of 10-60 astronomical units, persisting over intervals of 1-4 years. All these features appear to move away from the star at projected speeds of 4-10 kilometres per second, suggesting highly eccentric or unbound trajectories if they are associated with physical entities. The origin, localization, morphology and rapid evolution of these features are difficult to reconcile with current theories.

Comparison between cone-beam and multislice computed tomography depicting mandibular neurovascular canal structures.

PubMed

Naitoh, Munetaka; Nakahara, Kino; Suenaga, Yutaka; Gotoh, Kenichi; Kondo, Shintaro; Ariji, Eiichiro

2010-01-01

The most common diagnostic imaging modalities for cross-sectional imaging in dental implant planning are currently cone-beam computed tomography (CBCT) and multislice CT (MSCT). However, clinical differences between CBCT and MSCT in this task have not been fully clarified. In this investigation, the detection of fine anatomical structures in the mandible was assessed and compared between CBCT and MSCT images. The sample consisted of 28 patients who had undergone CBCT and MSCT. The bifid mandibular canal in the mandibular ramus, accessory mental and buccal foramina, and median and lateral lingual bony canals were observed in 2-D images, and the findings were compared between CBCT and MSCT. Four of 19 canals observed in CBCT were not observed in MSCT images. Three accessory mental foramina in 2 patients and 28 lateral lingual bony canals in 18 patients were observed consistently using the two methods. Depiction of fine anatomic features in the mandible associated with neurovascular structures is consistent between CBCT and MSCT images. Copyright 2010 Mosby, Inc. All rights reserved.

Structural studies on choline-carboxylate bio-ionic liquids by x-ray scattering and molecular dynamics.

PubMed

Tanzi, Luana; Ramondo, Fabio; Caminiti, Ruggero; Campetella, Marco; Di Luca, Andrea; Gontrani, Lorenzo

2015-09-21

We report a X-ray diffraction and molecular dynamics study on three choline-based bio-ionic liquids, choline formate, [Ch] [For], choline propanoate, [Ch][Pro], and choline butanoate, [Ch][But]. For the first time, this class of ionic liquids has been investigated by X-ray diffraction. Experimental and theoretical structure factors have been compared for each term of the series. Local structural organization has been obtained from ab initio calculations through static models of isolated ion pairs and dynamic simulations of small portions of liquids through twelve, ten, and nine ion pairs for [Ch][For], [Ch][Pro], and [Ch][But], respectively. All the theoretical models indicate that cations and anions are connected by strong hydrogen bonding and form stable ion pairs in the liquid that are reminiscent of the static ab initio ion pairs. Different structural aspects may affect the radial distribution function, like the local structure of ion pairs and the conformation of choline. When small portions of liquids have been simulated by dynamic quantum chemical methods, some key structural features of the X-ray radial distribution function were well reproduced whereas the classical force fields here applied did not entirely reproduce all the observed structural features.

Structural studies on choline-carboxylate bio-ionic liquids by x-ray scattering and molecular dynamics

NASA Astrophysics Data System (ADS)

Tanzi, Luana; Ramondo, Fabio; Caminiti, Ruggero; Campetella, Marco; Di Luca, Andrea; Gontrani, Lorenzo

2015-09-01

We report a X-ray diffraction and molecular dynamics study on three choline-based bio-ionic liquids, choline formate, [Ch] [For], choline propanoate, [Ch][Pro], and choline butanoate, [Ch][But]. For the first time, this class of ionic liquids has been investigated by X-ray diffraction. Experimental and theoretical structure factors have been compared for each term of the series. Local structural organization has been obtained from ab initio calculations through static models of isolated ion pairs and dynamic simulations of small portions of liquids through twelve, ten, and nine ion pairs for [Ch][For], [Ch][Pro], and [Ch][But], respectively. All the theoretical models indicate that cations and anions are connected by strong hydrogen bonding and form stable ion pairs in the liquid that are reminiscent of the static ab initio ion pairs. Different structural aspects may affect the radial distribution function, like the local structure of ion pairs and the conformation of choline. When small portions of liquids have been simulated by dynamic quantum chemical methods, some key structural features of the X-ray radial distribution function were well reproduced whereas the classical force fields here applied did not entirely reproduce all the observed structural features.

Quantification of Soil Pore Structure Based on Minkowski-Functions

NASA Astrophysics Data System (ADS)

Vogel, H.; Weller, U.; Schlüter, S.

2009-05-01

The porous structure in soils and other geologic media is typically a complex 3-dimensional object. Most of the physical material properties including mechanical and hydraulic characteristics are immediately linked to this structure which can be directly observed using non-invasive techniques as e.g. X-ray tomography. It is an old dream and still a formidable challenge to related structural features of porous media to their physical properties. In this contribution we present a scale-invariant concept to quantify pore structure based on a limited set of meaningful morphological functions. They are based on d+1 Minkowski functionals as defined for d-dimensional bodies. These basic quantities are determined as a function of pore size obtained by filter procedures using mathematical morphology. The resulting Minkowski functions provide valuable information on pore size, pore surface area and pore topology having the potential to be linked to physical properties. The theoretical background and the related algorithms are presented and the approach is demonstrated for the structure of an arable topsoil obtained by X-ray micro tomography. We also discuss the fundamental problem of limited resolution which is critical for any attempt to quantify structural features at any scale.

Nonlinear absorption in AlGaAs/GaAs multiple quantum well structures grown by metalorganic chemical vapor deposition

NASA Technical Reports Server (NTRS)

Lee, H. C.; Hariz, A.; Dapkus, P. D.; Kost, A.; Kawase, M.

1987-01-01

This paper reports the study of growth conditions for achieving the sharp exciton resonances and low-intensity saturation of these resonances in AlGaAs-GaAs multiple quantum well structures grown by metalorganic chemical vapor deposition. Low growth temperature is necessary to observe this sharp resonance feature at room temperature. The optimal growth conditions are a tradeoff between the high temperatures required for high quality AlGaAs and low temperatures required for high-purity GaAs. A strong optical saturation of the excitonic absorption has been observed. A saturation density as low as 250 W/sq cm is reported.

TiO2 synthesized by microwave assisted solvothermal method: Experimental and theoretical evaluation

NASA Astrophysics Data System (ADS)

Moura, K. F.; Maul, J.; Albuquerque, A. R.; Casali, G. P.; Longo, E.; Keyson, D.; Souza, A. G.; Sambrano, J. R.; Santos, I. M. G.

2014-02-01

In this study, a microwave assisted solvothermal method was used to synthesize TiO2 with anatase structure. The synthesis was done using Ti (IV) isopropoxide and ethanol without templates or alkalinizing agents. Changes in structural features were observed with increasing time of synthesis and evaluated using periodic quantum chemical calculations. The anatase phase was obtained after only 1 min of reaction besides a small amount of brookite phase. Experimental Raman spectra are in accordance with the theoretical one. Micrometric spheres constituted by nanometric particles were obtained for synthesis from 1 to 30 min, while spheres and sticks were observed after 60 min.

Laser-ranging scanning system to observe topographical deformations of volcanoes.

PubMed

Aoki, T; Takabe, M; Mizutani, K; Itabe, T

1997-02-20

We have developed a laser-ranging system to observe the topographical structure of volcanoes. This system can be used to measure the distance to a target by a laser and shows the three-dimensional topographical structure of a volcano with an accuracy of 30 cm. This accuracy is greater than that of a typical laser-ranging system that uses a corner-cube reflector as a target because the reflected light jitters as a result of inclination and unevenness of the target ground surface. However, this laser-ranging system is useful for detecting deformations of topographical features in which placement of a reflector is difficult, such as in volcanic regions.

Relatively stable, large-amplitude Alfvenic waves seen at 2.5 and 5.0 AU

NASA Technical Reports Server (NTRS)

Mavromichalaki, H.; Moussas, X.; Quenby, J. J.; Valdes-Galicia, J. F.; Smith, E. J.

1988-01-01

Pioneer 11 and 10 observations of the wave structure seen in a corotating interaction region at 2.5 AU on day 284 of 1973 and 8 days later at 5 AU reveal large-amplitude Alfvenic structures with many detailed correlations seen between their features at the two radial distances. Hodogram analysis suggests the dominance of near plane polarized, transverse Alfvenic mode fluctuations with periods between 2 min and one hour or more. Some wave evolution close to the Corotating Interaction Region (CIR) shock is noticed, but waves towards the center of the compression seem to propagate with little damping between the spacecraft observation positions.

Music Structure Analysis from Acoustic Signals

NASA Astrophysics Data System (ADS)

Dannenberg, Roger B.; Goto, Masataka

Music is full of structure, including sections, sequences of distinct musical textures, and the repetition of phrases or entire sections. The analysis of music audio relies upon feature vectors that convey information about music texture or pitch content. Texture generally refers to the average spectral shape and statistical fluctuation, often reflecting the set of sounding instruments, e.g., strings, vocal, or drums. Pitch content reflects melody and harmony, which is often independent of texture. Structure is found in several ways. Segment boundaries can be detected by observing marked changes in locally averaged texture.

Investigating the 3D Structure of the Winds of Hot Supergiants

NASA Astrophysics Data System (ADS)

Klement, Robert

2018-04-01

An observational effort targeting supergiant stars of spectral classes B and A has been started using the VEGA high spectral resolution visible beam combiner at the CHARA array. The H-alpha emission from the structured stellar winds was resolved with respect to the surrounding continuum, showing signs of inhomogenities in the circumstellar environments as well as temporal variability on different time scales. We have begun a radiative transfer modelling effort to investigate the clumpy structure of the stellar winds and the origin of the inhomogenities, probably linked to the stellar photosphere features.

Postive seedling-shrub relationships in natural regeneration of ponderosa pine

Treesearch

Christopher R. Keyes; Douglas A. Maguire

2005-01-01

An understanding of natural regeneration processes, and the stand structural features that influence those processes, is vital to attaining goals associated with natural regeneration. This paper discusses natural regeneration concepts and the interactions that occur between shrubs and natural regeneration of ponderosa pine. The interactions observed recently in a...

Interference Effects from Grammatically Unavailable Constituents during Sentence Processing

ERIC Educational Resources Information Center

Van Dyke, Julie A.

2007-01-01

Evidence from 3 experiments reveals interference effects from structural relationships that are inconsistent with any grammatical parse of the perceived input. Processing disruption was observed when items occurring between a head and a dependent overlapped with either (or both) syntactic or semantic features of the dependent. Effects of syntactic…

Migration features of Ips typographus in the Tatra Mountains: using a genetic method

Treesearch

Ferenc Lakatos

2003-01-01

The genetic structure of Ips typographus populations in the Tatra Mountains was studied based on the observed differences of gene flow and migration rate. It was a highlighted question as to what extent different natural barriers influence the migration potential of the species.

Structure, Features, and Faculty Content in ARL Member Repositories

ERIC Educational Resources Information Center

Mercer, Holly; Koenig, Jay; McGeachin, Robert B.; Tucker, Sandra L.

2011-01-01

Questions about the optimal way to present repository content to authors, submitters, and end-users, prompted this study. The authors examined, through an observation and a survey, the institutional repositories of peer institutions in the ARL for good practices related to the presentation and organization of faculty-authored institutional…

Autism spectrum disorder: seeing is not understanding.

PubMed

Fecteau, Shirley; Lepage, Jean-François; Théoret, Hugo

2006-02-21

Impairments in social and emotional skills are a defining feature of autism spectrum disorder. Recent research shows that structural and functional abnormalities within the neural system that matches observation and execution of actions--the mirror neuron system--may explain the social aspects of the pathophysiology of autism spectrum disorder.

STEM High School Communities: Common and Differing Features

ERIC Educational Resources Information Center

Tofel-Grehl, Colby; Callahan, Carolyn M.

2014-01-01

Using observations and interviews, the researchers explore the experiences and perspectives of students, teachers, and administrators at six specialized high schools with a focus on science, technology, engineering, and mathematics (STEM) as they pertain to the practices and structures affecting student outcomes. Four themes were found to be…

Lidar observation of marine mixed layer

NASA Technical Reports Server (NTRS)

Yamagishi, Susumu; Yamanouchi, Hiroshi; Tsuchiya, Masayuki

1992-01-01

Marine mixed layer is known to play an important role in the transportation of pollution exiting ship funnels. The application of a diffusion model is critically dependent upon a reliable estimate of a lid. However, the processes that form lids are not well understood, though considerable progress toward marine boundary layer has been achieved. This report describes observations of the marine mixed layer from the course Ise-wan to Nii-jima with the intention of gaining a better understanding of their structure by a shipboard lidar. These observations were made in the summer of 1991. One interesting feature of the observations was that the multiple layers of aerosols, which is rarely numerically modeled, was encountered. No attempt is yet made to present a systematic analysis of all the data collected. Instead we focus on observations that seem to be directly relevant to the structure of the mixed layer.

The semiology of febrile seizures: Focal features are frequent.

PubMed

Takasu, Michihiko; Kubota, Tetsuo; Tsuji, Takeshi; Kurahashi, Hirokazu; Numoto, Shingo; Watanabe, Kazuyoshi; Okumura, Akihisa

2017-08-01

To clarify the semiology of febrile seizures (FS) and to determine the frequency of FS with symptoms suggestive of focal onset. FS symptoms in children were reported within 24h of seizure onset by the parents using a structured questionnaire consisting principally of closed-ended questions. We focused on events at seizure commencement, including changes in behavior and facial expression, and ocular and oral symptoms. We also investigated the autonomic and motor symptoms developing during seizures. The presence or absence of focal and limbic features was determined for each patient. The associations of certain focal and limbic features with patient characteristics were assessed. Information was obtained on FS in 106 children. Various events were recorded at seizure commencement. Behavioral changes were observed in 35 children, changes in facial expression in 53, ocular symptoms in 78, and oral symptoms in 90. In terms of events during seizures, autonomic symptoms were recognized in 78, and convulsive motor symptoms were recognized in 68 children. Focal features were evident in 81 children; 38 children had two or more such features. Limbic features were observed in 44 children, 9 of whom had two or more such features. There was no significant relationship between any patient characteristic and the numbers of focal or limbic features. The semiology of FS varied widely among children, and symptoms suggestive of focal onset were frequent. FS of focal onset may be more common than is generally thought. Copyright © 2017 Elsevier Inc. All rights reserved.

Change Detection in Uav Video Mosaics Combining a Feature Based Approach and Extended Image Differencing

NASA Astrophysics Data System (ADS)

Saur, Günter; Krüger, Wolfgang

2016-06-01

Change detection is an important task when using unmanned aerial vehicles (UAV) for video surveillance. We address changes of short time scale using observations in time distances of a few hours. Each observation (previous and current) is a short video sequence acquired by UAV in near-Nadir view. Relevant changes are, e.g., recently parked or moved vehicles. Examples for non-relevant changes are parallaxes caused by 3D structures of the scene, shadow and illumination changes, and compression or transmission artifacts. In this paper we present (1) a new feature based approach to change detection, (2) a combination with extended image differencing (Saur et al., 2014), and (3) the application to video sequences using temporal filtering. In the feature based approach, information about local image features, e.g., corners, is extracted in both images. The label "new object" is generated at image points, where features occur in the current image and no or weaker features are present in the previous image. The label "vanished object" corresponds to missing or weaker features in the current image and present features in the previous image. This leads to two "directed" change masks and differs from image differencing where only one "undirected" change mask is extracted which combines both label types to the single label "changed object". The combination of both algorithms is performed by merging the change masks of both approaches. A color mask showing the different contributions is used for visual inspection by a human image interpreter.

Tuning transport properties on graphene multiterminal structures by mechanical deformations

NASA Astrophysics Data System (ADS)

Latge, Andrea; Torres, Vanessa; Faria, Daiara

The realization of mechanical strain on graphene structures is viewed as a promise route to tune electronic and transport properties such as changing energy band-gaps and promoting localization of states. Using continuum models, mechanical deformations are described by effective gauge fields, mirrored as pseudomagnetic fields that may reach quite high values. Interesting symmetry features are developed due to out of plane deformations on graphene; lift sublattice symmetry was predicted and observed in centrosymmetric bumps and strained nanobubbles. Here we discuss the effects of Gaussian-like strain on a hexagonal graphene flake connected to three leads, modeled as perfect graphene nanoribbons. The Green function formalism is used within a tight-binding approximation. For this particular deformation sharp resonant states are achieved depending on the strained structure details. We also study a fold-strained structure in which the three leads are deformed extending up to the very center of the hexagonal flake. We show that conductance suppressions can be controlled by the strain intensity and important transport features are modeled by the electronic band structure of the leads.

Social relationship difficulties in autism and reactive attachment disorder: Improving diagnostic validity through structured assessment.

PubMed

Davidson, Claire; O'Hare, Anne; Mactaggart, Fiona; Green, Jonathan; Young, David; Gillberg, Christopher; Minnis, Helen

2015-05-01

Autism Spectrum Disorder (ASD) versus Reactive Attachment Disorder (RAD) is a common diagnostic challenge for clinicians due to overlapping difficulties with social relationships. RAD is associated with neglect or maltreatment whereas ASD is not: accurate differential diagnosis is therefore critical. Very little research has investigated the relationship between the two, and it is unknown if standardised measures are able to discriminate between ASD and RAD. The current study aimed to address these issues. Fifty eight children with ASD, and no history of maltreatment, were group matched on age with 67 children with RAD. Group profiles on multi-informant measures of RAD were investigated and group differences explored. Discriminant function analysis determined assessment features that best discriminated between the two groups. Although, according to parent report, children with ASD presented with significantly fewer indiscriminate friendliness behaviours compared to the RAD group (p<0.001), 36 children with ASD appeared to meet core RAD criteria. However, structured observation clearly demonstrated that features were indicative of ASD and not RAD for all but 1 of these 36 children. Children with RAD and children with ASD may demonstrate similar social relationship difficulties but there appears to be a difference in the social quality of the interactions between the groups. In most cases it was possible to differentiate between children with ASD and children with RAD via structured observation. Nevertheless, for a small proportion of children with ASD, particularly those whose difficulties may be more subtle, our current standardised measures, including structured observation, may not be effective in differentiating RAD from ASD. Copyright © 2015. Published by Elsevier Ltd.

Characteristics of ripple structures revealed in OH airglow images

NASA Astrophysics Data System (ADS)

Li, Jing; Li, Tao; Dou, Xiankang; Fang, Xin; Cao, Bing; She, Chiao-Yao; Nakamura, Takuji; Manson, Alan; Meek, Chris; Thorsen, Denise

2017-03-01

Small-scale ripple structures observed in OH airglow images are most likely induced by either dynamic instability due to large wind shear or convective instability due to superadiabatic lapse rate. Using the data set taken in the mesopause region with an OH all-sky imager at Yucca Ridge Field Station, Colorado (40.7°N, 104.9°W), from September 2003 to December 2005, we study the characteristics and seasonal variations of ripple structures. By analyzing the simultaneous background wind and temperature observed by the nearby sodium temperature/wind lidar at Fort Collins, Colorado (40.6°N, 105°W), and a nearby medium-frequency radar at Platteville, Colorado (40.2°N, 105.8°W), we are able to statistically study the possible relation between ripples and the background atmosphere conditions. Characteristics and seasonal variations of ripples are presented in detail in this study. The occurrence frequency of ripples exhibits clear seasonal variability, with peak in autumn. The occurrence of ripples shows a local time dependence, which is most likely associated with the solar tides. The lifetime and spatial scale of these ripples are typically 5-20 min and 5-10 km, respectively, and most of the ripples move preferentially either southward or northward. However, more than half of the observed ripples do not advect with background flow; they have higher Richardson numbers than those ripples that advect with background flow. It is possible that they are not instability features but wave structures that are hard to be distinguished from the real instability features.

Onset and evolution of laser induced periodic surface structures on indium tin oxide thin films for clean ablation using a repetitively pulsed picosecond laser at low fluence

NASA Astrophysics Data System (ADS)

Farid, N.; Dasgupta, P.; O’Connor, G. M.

2018-04-01

The onset and evolution of laser induced periodic surface structures (LIPSS) is of key importance to obtain clean ablated features on indium tin oxide (ITO) thin films at low fluences. The evolution of subwavelength periodic nanostructures on a 175 nm thick ITO film, using 10 ps laser pulses at a wavelength of 1032 nm, operating at 400 kHz, is investigated. Initially nanoblisters are observed when a single pulse is applied below the damage threshold fluence (0.45 J cm‑2) the size and distribution of nanoblisters are found to depend on fluence. Finite difference time domain (FDTD) simulations support the hypothesis that conductive nanoblisters can enhance the local intensity of the applied electromagnetic field. The LIPSS are observed to evolve from regions where the electric field enhancement has occurred; LIPSS has a perpendicular orientation relative to the laser polarization for a small number (<5) of applied pulses. The LIPSS periodicity depends on nanoblister size and distribution; a periodicity down to 100 nm is observed at the lower fluence periphery of the Gaussian irradiated area where nanoblisters are smallest and more closely arranged. Upon irradiation with successive (>5) pulses, the orientation of the periodic structures appears to rotate and evolve to become aligned in parallel with the laser polarization at approximately the same periodicity. These orientation effects are not observed at higher fluence—due to the absence of the nanoblister-like structures; this apparent rotation is interpreted to be due to stress-induced fragmentation of the LIPSS structure. The application of subsequent pulses leads to clean ablation. LIPSS are further modified into features of a shorter period when laser scanning is used. Results provide evidence that the formation of conductive nanoblisters leads to the enhancement of the applied electromagnetic field and thereby can be used to precisely control laser ablation on ITO thin films.

X-ray and Neutron Scattering Study of the Formation of Core–Shell-Type Polyoxometalates

DOE PAGES

Yin, Panchao; Wu, Bin; Mamontov, Eugene; ...

2016-02-05

A typical type of core-shell polyoxometalates can be obtained through the Keggin-type polyoxometalate-templated growth of a layer of spherical shell structure of {Mo 72Fe 30}. Small angle X-ray scattering is used to study the structural features and stability of the core-shell structures in aqueous solutions. Time-resolved small angle X-ray scattering is applied to monitor the synthetic reactions and a three-stage formation mechanism is proposed to describe the synthesis of the core-shell polyoxometalates based on the monitoring results. Quasi-elastic and inelastic neutron scattering are used to probe the dynamics of water molecules in the core-shell structures and two different types ofmore » water molecules, the confined and structured water, are observed. These water molecules play an important role in bridging core and shell structures and stabilizing the cluster structures. A typical type of core shell polyoxometalates can be obtained through the Keggin-type polyoxometalate-templated growth of a layer of spherical shell structure of {Mo 72Fe 30}. Small-angle X-ray scattering is used to study the structural features and stability of the core shell structures in aqueous solutions. Time-resolved small-angle X-ray scattering is applied to monitor the synthetic reactions, and a three-stage formation mechanism is proposed to describe the synthesis of the core shell polyoxometalates based on the monitoring results. New protocols have been developed by fitting the X-ray data with custom physical models, which provide more convincing, objective, and completed data interpretation. Quasi-elastic and inelastic neutron scattering are used to probe the dynamics of water molecules in the core shell structures, and two different types of water molecules, the confined and structured water, are observed. These water molecules play an important role in bridging core and shell structures and stabilizing the cluster structures.« less

Dynamical injections as the source of near geostationary quiet time particle spatial boundaries

NASA Technical Reports Server (NTRS)

Mauk, B. H.; Meng, C. I.

1983-01-01

The question whether the noon-dusk feature is a manifestation of the spatial structures that should arise from quasi-stationary convection is examined. The key consideration here is whether the energy dispersion of the feature can be explained. It is shown that the observed energy dispersion cannot be attributed to the standard stationary convection configurations, either perturbed or unperturbed. It is also demonstrated, using a detailed computer simulation, that the nighttime, double-spiral-shaped injection boundary (used previously to reproduce the fast changing nighttime features) is successful at reproducing the noon-dusk feature by allowing the particles to evolve for periods of 12 to 36 hours after the injection. It is stressed that the portion of the injection boundary responsible for the feature looks very different from the standard convection boundaries configuration. Conclusions are offered concerning the importance of quasi-stationary convection as the mechanism by which the near geostationary regions are populated.

In Situ Observations of PSCs Generated by Gravity Waves

NASA Technical Reports Server (NTRS)

Pfister, Leonhard; Bui, Paul; Mahoney, M. J.; Gandrud, Bruce; Hipskind, K. Stephen (Technical Monitor)

2000-01-01

During SOLVE, the bulk of the in-situ observations of PSCs are of large scale extended structures associated with synoptic scale cooling. The nature of these structures is also determined by layers of high relative NOy that have been stretched into thin layers by advective processes. Some of the in situ observations, however, are clearly correlated with gravity wave signatures. The first goal of this work is to examine these cases and evaluate gravity wave parameters. In particular, we are interested in the intrinsic periods of the waves and their temperature amplitude, which are key ingredients in the nucleation process. Secondly, we will examine some rudimentary properties of the particle size distributions and composition, comparing these with in situ observations of the more extended PSC features. Finally, we will attempt to ascertain the mechanism which generates the gravity waves.

Gap features of layered iron-selenium-tellurium compound below and above the superconducting transition temperature by break-junction spectroscopy combined with STS

NASA Astrophysics Data System (ADS)

Ekino, T.; Sugimoto, A.; Gabovich, A. M.

2018-05-01

We studied correlations between the superconducting gap features of Te-substituted FeSe observed by scanning tunnelling spectroscopy (STS) and break-junction tunnelling spectroscopy (BJTS). At bias voltages outside the superconducting gap-energy range, the broad gap structure exists, which becomes the normal-state gap above the critical temperature, T c. Such behaviour is consistent with the model of the partially gapped density-wave superconductor involving both superconducting gaps and pseudogaps, which has been applied by us earlier to high-Tc cuprates. The similarity suggests that the parent electronic spectrum features should have much in common for these classes of materials.

Paleokarst processes in the Eocene limestones of the Pyramids Plateau, Giza, Egypt

NASA Astrophysics Data System (ADS)

El Aref, M. M.; Refai, E.

The Eocene limestones of the Pyramids plateau are characterized by landforms of stepped terraced escarpment and karst ridges with isolated hills. The carbonate country rocks are also dominated by minor surface, surface to subsurface and subsurface solution features associated with karst products. The systematic field observations eludicate the denudation trend of the minor solution features and suggest the origin of the regional landscapes. The lithologic and structural characters of the limestone country rocks comprise the main factors controlling the surface and subsurface karst evolution. The development of the karst features and the associated sediments in the study area provides information on the paleohydrolic, chemical and climatic environments involved in the origin of the karstification.

Mid-infrared interferometric variability of DG Tau: implications for the inner-disk structure .

NASA Astrophysics Data System (ADS)

Ábrahám, P.; Varga, J.; Gabányi, K. É.; Chen, L.; Kóspál, Á.; Ratzka, Th.; van Boekel, R.; Mosoni, L.; Henning, Th.

DG Tau is a low-mass young star whose strongly accreting disk shows a variable 10 mu m silicate feature, that may even turn temporarily from emission to absorption. Aiming to find the physical reason of this variability, we analysed multiepoch VLTI/MIDI interferometric observations. We found that the inner disk within 3 au radius exhibits a 10 mu m absorption feature related to amorphous silicate grains, while the outer disk displays a variable crystalline feature in emission, similar in shape to the spectrum of comet Hale-Bopp. The variability may be related to a fluctuating amount of dusty material above the disk surface, possibly due to turbulence.

Increasing dimension of structures by 4D printing shape memory polymers via fused deposition modeling

NASA Astrophysics Data System (ADS)

Hu, G. F.; Damanpack, A. R.; Bodaghi, M.; Liao, W. H.

2017-12-01

The main objective of this paper is to introduce a 4D printing method to program shape memory polymers (SMPs) during fabrication process. Fused deposition modeling (FDM) as a filament-based printing method is employed to program SMPs during depositing the material. This method is implemented to fabricate complicated polymeric structures by self-bending features without need of any post-programming. Experiments are conducted to demonstrate feasibility of one-dimensional (1D)-to 2D and 2D-to-3D self-bending. It is shown that 3D printed plate structures can transform into masonry-inspired 3D curved shell structures by simply heating. Good reliability of SMP programming during printing process is also demonstrated. A 3D macroscopic constitutive model is established to simulate thermo-mechanical features of the printed SMPs. Governing equations are also derived to simulate programming mechanism during printing process and shape change of self-bending structures. In this respect, a finite element formulation is developed considering von-Kármán geometric nonlinearity and solved by implementing iterative Newton-Raphson scheme. The accuracy of the computational approach is checked with experimental results. It is demonstrated that the theoretical model is able to replicate the main characteristics observed in the experiments. This research is likely to advance the state of the art FDM 4D printing, and provide pertinent results and computational tool that are instrumental in design of smart materials and structures with self-bending features.

The influence of rotation on optical emission profiles of O stars

NASA Astrophysics Data System (ADS)

Hillier, D. John; Bouret, Jean-Claude; Lanz, Thierry; Busche, Joseph R.

2012-10-01

We study the formation of photospheric emission lines in O stars and show that the rectangular profiles, sometimes double peaked, that are observed for some stars are a direct consequence of rotation, and it is unnecessary to invoke an enhanced density structure in the equatorial regions. Emission lines, such as N IV λ4058 and the N III λλ4634-4640-4642 multiplet, exhibit non-standard 'limb-darkening' laws. The lines can be in absorption for rays striking the centre of the star and in emission for rays near the limb. Weak features in the flux spectrum do not necessarily indicate an intrinsically weak feature - instead the feature can be weak because of cancellation between absorption in 'core' rays and emission from rays near the limb. Rotation also modifies line profiles of wind diagnostics such as He II λ4686 and Hα and should not be neglected when inferring the actual stratification, level and nature of wind structures.

Electronic fingerprints of DNA bases on graphene.

PubMed

Ahmed, Towfiq; Kilina, Svetlana; Das, Tanmoy; Haraldsen, Jason T; Rehr, John J; Balatsky, Alexander V

2012-02-08

We calculate the electronic local density of states (LDOS) of DNA nucleotide bases (A,C,G,T), deposited on graphene. We observe significant base-dependent features in the LDOS in an energy range within a few electronvolts of the Fermi level. These features can serve as electronic fingerprints for the identification of individual bases in scanning tunneling spectroscopy (STS) experiments that perform image and site dependent spectroscopy on biomolecules. Thus the fingerprints of DNA-graphene hybrid structures may provide an alternative route to DNA sequencing using STS. © 2012 American Chemical Society

Morphological characters of the thickbody skate Amblyraja frerichsi (Krefft 1968) (Rajiformes: Rajidae), with notes on its biology.

PubMed

Bustamante, Carlos; Lamilla, Julio; Concha, Francisco; Ebert, David A; Bennett, Michael B

2012-01-01

Detailed descriptions of morphological features, morphometrics, neurocranium anatomy, clasper structure and egg case descriptions are provided for the thickbody skate Amblyraja frerichsi; a rare, deep-water species from Chile, Argentina and Falkland Islands. The species diagnosis is complemented from new observations and aspects such as colour, size and distribution are described. Geographic and bathymetric distributional ranges are discussed as relevant features of this taxońs biology. Additionally, the conservation status is assessed including bycatch records from Chilean fisheries.

Morphological Characters of the Thickbody Skate Amblyraja frerichsi (Krefft 1968) (Rajiformes: Rajidae), with Notes on Its Biology

PubMed Central

Bustamante, Carlos; Lamilla, Julio; Concha, Francisco; Ebert, David A.; Bennett, Michael B.

2012-01-01

Detailed descriptions of morphological features, morphometrics, neurocranium anatomy, clasper structure and egg case descriptions are provided for the thickbody skate Amblyraja frerichsi; a rare, deep-water species from Chile, Argentina and Falkland Islands. The species diagnosis is complemented from new observations and aspects such as colour, size and distribution are described. Geographic and bathymetric distributional ranges are discussed as relevant features of this taxońs biology. Additionally, the conservation status is assessed including bycatch records from Chilean fisheries. PMID:22768186

A search for the coronal origins of fast solar wind streams during the whole sun month period

NASA Technical Reports Server (NTRS)

Lazarus, A. J.; Steinberg, J. T.; Biesecker, D. A.; Forsyth, R. J.; Galvin, A. B.; Ipavich, F. M.; Gibson, S. E.; Lecinski, A.; Hassler, D. M.; Hoeksema, J. T.;

Small hydrocarbons on metal surfaces: adsorption-induced changes in electronic and geometric structure as seen by X-ray absorption spectroscopy.

PubMed

Wöll, C

2001-03-01

Monolayers of several unsaturated and saturated hydrocarbons (ethylene, acetylene, benzene, n-hexane, cyclohexane, n-octane, n-hexatriacontane) adsorbed on a number of different metal surfaces [Cu(111), Au(111), Ru(0001) and Pt(111)] have been investigated by carbon K-edge X-ray absorption spectroscopy (XAS). Whereas the corresponding multilayer data qualitatively resemble the core-excitation spectra observed for the free molecules, generally significant modifications are observed in the monolayer data. For the saturated hydrocarbons, a strong quenching of the Rydberg R resonance at 287.7 eV and the appearance of a new broad feature at around 285.1 eV (M resonance) is observed for molecules in direct contact with the metal surfaces. In the case of the unsaturated hydrocarbons, for a number of metals, distinct new features are seen in the XAS data, revealing significant intramolecular distortions.

High Cadence Observations and Analysis of Spicular-type Events Using CRISP Onboard SST

NASA Astrophysics Data System (ADS)

Shetye, J.; Doyle, J. G.; Scullion, E.; Nelson, C. J.; Kuridze, D.

2016-04-01

We present spectroscopic and imaging observations of apparent ultra-fast spicule-like features observed with CRisp Imaging SpectroPolarimeter (CRISP) at the Swedish 1-m Solar Telescope (SST). The data shows spicules with an apparent velocity above 500 km s-1, very short lifetimes of up to 20 s and length/height around 3500 km. The spicules are seen as dark absorption structures in the Hα wings ±516 mÅ, ±774 mÅ and ±1032 mÅ which suddenly appear and disappear from the FOV. These features show a time delay in their appearance in the blue and red wings by 3-5 s. We suggest that their appearance/disappearance is due to their Doppler motion in and out of the 60 mÅ filter. See Fig. 1 for the evolution of the event at two line positions.

A galactic microquasar mimicking winged radio galaxies.

PubMed

Martí, Josep; Luque-Escamilla, Pedro L; Bosch-Ramon, Valentí; Paredes, Josep M

2017-11-24

A subclass of extragalactic radio sources known as winged radio galaxies has puzzled astronomers for many years. The wing features are detected at radio wavelengths as low-surface-brightness radio lobes that are clearly misaligned with respect to the main lobe axis. Different models compete to account for these peculiar structures. Here, we report observational evidence that the parsec-scale radio jets in the Galactic microquasar GRS 1758-258 give rise to a Z-shaped radio emission strongly reminiscent of the X and Z-shaped morphologies found in winged radio galaxies. This is the first time that such extended emission features are observed in a microquasar, providing a new analogy for its extragalactic relatives. From our observations, we can clearly favour the hydrodynamic backflow interpretation against other possible wing formation scenarios. Assuming that physical processes are similar, we can extrapolate this conclusion and suggest that this mechanism could also be at work in many extragalactic cases.

Scanning probe microscopy in mineralogical studies: about origin of the observed roughness of natural silica-rich glasses

NASA Astrophysics Data System (ADS)

Golubev, Ye A.; Isaenko, S. I.

2017-10-01

We have studied different mineralogical objects: natural glasses of impact (tektites, impactites) and volcanic (obsidians) origin, using atomic force microscopy, X-ray microanalysis, infrared and Raman spectroscopy. The spectroscopy showed the difference in the structure and chemical composition of the glasses of different origin. The analysis of the dependence of nanoscale heterogeneity of the glasses, revealed by the atomic force microscopy, on their structural and chemical features was carried out.

Pressure-induced structural change in liquid GeI4.

PubMed

Fuchizaki, Kazuhiro; Nishimura, Hironori; Hase, Takaki; Saitoh, Hiroyuki

2017-12-27

The similarity in the shape of the melting curve of GeI 4 to that of SnI 4 suggests that a liquid-liquid transition as observed in liquid SnI 4 is also expected to occur in liquid GeI 4 . Because the slope of the melting curve of GeI 4 abruptly changes at around 3 GPa, in situ synchrotron diffraction measurements were conducted to examine closely the structural changes upon compression at around 3 GPa. The reduced radial distribution functions of the high- and low-pressure liquid states of GeI 4 share the same feature inherent in the high-pressure (high-density) and low-pressure (low-density) radial distribution functions of liquid SnI 4 . This feature allows us to introduce local order parameters that we may use to observe the transition. Unlike the transition in liquid SnI 4 , the transition from the low-pressure to the high-pressure structure seems sluggish. We speculate that the liquid-liquid critical point of GeI 4 is no longer a thermodynamically stable state and is slightly located below the melting curve. As a result, the structural change is said to be a crossover rather than a transition. The behavior of the local-order parameters implies a metastable extension of the liquid-liquid phase boundary with a negative slope.

Expelled grains from an unseen parent body around AU Microscopii

NASA Astrophysics Data System (ADS)

Sezestre, É.; Augereau, J.-C.; Boccaletti, A.; Thébault, P.

2017-11-01

Context. Recent observations of the edge-on debris disk of AU Mic have revealed asymmetric, fast outward-moving arch-like structures above the disk midplane. Although asymmetries are frequent in debris disks, no model can readily explain the characteristics of these features. Aims: We present a model aiming to reproduce the dynamics of these structures, more specifically their high projected speeds and their apparent position. We test the hypothesis of dust emitted by a point source and then expelled from the system by the strong stellar wind of this young M-type star. In this model we make the assumption that the dust grains follow the same dynamics as the structures, I.e., they are not local density enhancements. Methods: We perform numerical simulations of test particle trajectories to explore the available parameter space, in particular the radial location R0 of the dust producing parent body and the size of the dust grains as parameterized by the value of β (ratio of stellar wind and radiation pressure forces over gravitation). We consider the cases of a static and of an orbiting parent body. Results: We find that for all considered scenarios (static or moving parent body), there is always a set of (R0,β) parameters able to fit the observed features. The common characteristics of these solutions is that they all require a high value of β, of around 6. This means that the star is probably very active, and the grains composing the structures are submicronic in order for observable grains to reach such high β values. We find that the location of the hypothetical parent body is closer in than the planetesimal belt, around 8 ± 2 au (orbiting case) or 28 ± 7 au (static case). A nearly periodic process of dust emission appears, of 2 yr in the orbiting scenarios and 7 yr in the static case. Conclusions: We show that the scenario of sequential dust releases by an unseen point-source parent body is able to explain the radial behavior of the observed structures. We predict the evolution of the structures to help future observations discriminate between the different parent body configurations that have been considered. In the orbiting parent body scenario, we expect new structures to appear on the northwest side of the disk in the coming years.

Conditions for building a community of practice in an advanced physics laboratory

NASA Astrophysics Data System (ADS)

Irving, Paul W.; Sayre, Eleanor C.

2014-06-01

We use the theory of communities of practice and the concept of accountable disciplinary knowledge to describe how a learning community develops in the context of an upper-division physics laboratory course. The change in accountable disciplinary knowledge motivates students' enculturation into a community of practice. The enculturation process is facilitated by four specific structural features of the course and supported by a primary instructional choice. The four structural features are "paucity of instructor time," "all in a room together," "long and difficult experiments," and "same experiments at different times." The instructional choice is the encouragement of the sharing and development of knowledge and understanding by the instructor. The combination of the instructional choice and structural features promotes the development of the learning community in which students engage in authentic practices of a physicist. This results in a classroom community that can provide students with the opportunity to have an accelerated trajectory towards being a more central participant of the community of a practice of physicists. We support our claims with video-based observations of laboratory classroom interactions and individual, semistructured interviews with students about their laboratory experiences and physics identity.

Oblique Collision of the Leeward Antilles, Offshore Venezuela: Linking Onshore and Offshore Data from BOLIVAR

NASA Astrophysics Data System (ADS)

Beardsley, A. G.; Avé Lallemant, H. G.; Levander, A.; Clark, S. A.

2006-12-01

The kinematic history of the Leeward Antilles (offshore Venezuela) can be characterized with the integration of onshore outcrop data and offshore seismic reflection data. Deformation structures and seismic interpretation show that oblique convergence and wrench tectonics have controlled the diachronous deformation identified along the Caribbean - South America plate boundary. Field studies of structural features in outcrop indicate one generation of ductile deformation (D1) structures and three generations of brittle deformation (F1 - F3) structures. The earliest deformation (D1/F1) began ~ 110 Ma with oblique convergence between the Caribbean plate and South American plate. The second generation of deformation (F2) structures initiated in the Eocene with the extensive development of strike-slip fault systems along the diffuse plate boundary and the onset of wrench tectonics within a large-scale releasing bend. The most recent deformation (F3) has been observed in the west since the Miocene where continued dextral strike-slip motion has led to the development of a major restraining bend between the Caribbean plate transform fault and the Oca - San Sebastian - El Pilar fault system. Deformation since the late Cretaceous has been accompanied by a total of 135° clockwise rotation. Interpretation of 2D marine reflection data indicates similar onshore and offshore deformation trends. Seismic lines that approximately parallel the coastline (NW-SE striking) show syndepositional normal faulting during F1/F2 and thrust faulting associated with F3. On seismic lines striking NNE-SSW, we interpret inversion of F2 normal faults with recent F3 deformation. We also observe both normal and thrust faults related to F3. The thick sequence of recent basin sedimentation (Miocene - Recent), interpreted from the seismic data, supports the ongoing uplift and erosion of the islands; as suggested by fluid inclusion analysis. Overall, there appears to be a strong correlation between onshore micro- and mesoscopic deformational structures and offshore macro-scale structural features seen in the reflection data. The agreement of features supports our regional deformation and rotation model along the Caribbean - South America obliquely convergent plate boundary.

Nuclear Physics Around the Unitarity Limit.

PubMed

König, Sebastian; Grießhammer, Harald W; Hammer, H-W; van Kolck, U

2017-05-19

We argue that many features of the structure of nuclei emerge from a strictly perturbative expansion around the unitarity limit, where the two-nucleon S waves have bound states at zero energy. In this limit, the gross features of states in the nuclear chart are correlated to only one dimensionful parameter, which is related to the breaking of scale invariance to a discrete scaling symmetry and set by the triton binding energy. Observables are moved to their physical values by small perturbative corrections, much like in descriptions of the fine structure of atomic spectra. We provide evidence in favor of the conjecture that light, and possibly heavier, nuclei are bound weakly enough to be insensitive to the details of the interactions but strongly enough to be insensitive to the exact size of the two-nucleon system.

Determination of plasma parameters from soft X-ray images for coronal holes /open magnetic field configurations/ and coronal large-scale structures /extended closed-field configurations/

NASA Technical Reports Server (NTRS)

Maxson, C. W.; Vaiana, G. S.

1977-01-01

In connection with high-quality solar soft X-ray images the 'quiet' features of the inner corona have been separated into two sharply different components, including the strongly reduced emission areas or coronal holes (CH) and the extended regions of looplike emission features or large-scale structures (LSS). Particular central meridian passage observations of the prominent CH1 on August 21, 1973, are selected for a quantitative study. Histogram photographic density distributions for full-disk images at other central meridian passages of CH 1 are also presented, and the techniques of converting low photographic density data to deposited energy are discussed, with particular emphasis on the problems associated with the CH data.

Inhomogeneous kinetic effects related to intermittent magnetic discontinuities

NASA Astrophysics Data System (ADS)

Greco, A.; Valentini, F.; Servidio, S.; Matthaeus, W. H.

2012-12-01

A connection between kinetic processes and two-dimensional intermittent plasma turbulence is observed using direct numerical simulations of a hybrid Vlasov-Maxwell model, in which the Vlasov equation is solved for protons, while the electrons are described as a massless fluid. During the development of turbulence, the proton distribution functions depart from the typical configuration of local thermodynamic equilibrium, displaying statistically significant non-Maxwellian features. In particular, temperature anisotropy and distortions are concentrated near coherent structures, generated as the result of the turbulent cascade, such as current sheets, which are nonuniformly distributed in space. Here, the partial variance of increments (PVI) method has been employed to identify high magnetic stress regions within a two-dimensional turbulent pattern. A quantitative association between non-Maxwellian features and coherent structures is established.

High-angular-resolution stellar imaging with occultations from the Cassini spacecraft - III. Mira

NASA Astrophysics Data System (ADS)

Stewart, Paul N.; Tuthill, Peter G.; Nicholson, Philip D.; Hedman, Matthew M.

2016-04-01

We present an analysis of spectral and spatial data of Mira obtained by the Cassini spacecraft, which not only observed the star's spectra over a broad range of near-infrared wavelengths, but was also able to obtain high-resolution spatial information by watching the star pass behind Saturn's rings. The observed spectral range of 1-5 microns reveals the stellar atmosphere in the crucial water-bands which are unavailable to terrestrial observers, and the simultaneous spatial sampling allows the origin of spectral features to be located in the stellar environment. Models are fitted to the data, revealing the spectral and spatial structure of molecular layers surrounding the star. High-resolution imagery is recovered revealing the layered and asymmetric nature of the stellar atmosphere. The observational data set is also used to confront the state-of-the-art cool opacity-sampling dynamic extended atmosphere models of Mira variables through a detailed spectral and spatial comparison, revealing in general a good agreement with some specific departures corresponding to particular spectral features.

Jupiter before Juno: State of the atmosphere at cloud level in 2016 from PlanetCam observations in the 0.4-1.7 microns wavelength range and amateur observations in the visible

NASA Astrophysics Data System (ADS)

Hueso, Ricardo; Sanchez-Lavega, Agustin; Perez-Hoyos, Santiago; Rojas, Jose Felix; Iñurrigarro, Peio; Mendikoa, Iñigo; Go, Christopher; PVOL-IOPW Team

2016-10-01

The arrival of Juno to Jupiter provides a unique opportunity to link findings of the inner structure of the planet with astronomical observations of its meteorology at cloud level. Long time base observations of Jupiter's atmosphere before and during the Juno mission are critical in providing context to Junocam observations and may benefit the interpretation of the MWR data on the lower atmosphere structure as well as Juno data on the depth of the zonal winds. We have performed a long campaign of observations in the visible with the PlanetCam lucky imaging instrument in the 2.2m telescope at Calar Alto Observatory in Spain with observations obtained in December 2015 and in March, May, June and July 2016. In observations under good atmospheric seeing, the instrument allows to obtain images with a spatial resolution of 0.05'' in the visible and 0.1'' from 1.0 to 1.7 microns. The later is an interesting range of wavelengths for observing Jupiter because of the existence of several strong and weak methane absorption bands not generally used in high-resolution ground-based observations of the planet. A combination of images using narrow filters centered in methane absorption bands and their adjacent continuum allows studying the vertical structure of the clouds at horizontal spatial scales of 350-1000 km over the planet depending on the atmospheric seeing and filter used. The best images can be further processed showing features at spatial resolutions of about 150 km. We have also monitored the state of the atmosphere with images obtained by amateur astronomers contributing to the Planetary Virtual Observatory Laboratory database (http://pvol.ehu.eus). Based on both datasets we present zonal winds from -70 to +75 deg with an accuracy of 10 m/s in the low latitudes and 25 m/s in subpolar latitudes. Relative altitude maps of features observed in bands J, H and others with different methane absorption will be presented.

Recent Observations and Modeling of Narrowband Stimulated Electromagnetic Emissions SEEs at HAARP and EISCAT

NASA Astrophysics Data System (ADS)

Scales, W.; Mahmoudian, A.; Fu, H.; Bordikar, M. R.; Samimi, A.; Bernhardt, P. A.; Briczinski, S. J., Jr.; Kosch, M. J.; Senior, A.; Isham, B.

2014-12-01

There has been significant interest in so-called narrowband Stimulated Electromagnetic Emission SEE over the past several years due to recent discoveries at the High Frequency Active Auroral Research Program HAARP facility near Gakone, Alaska. Narrowband SEE (NSEE) has been defined as spectral features in the SEE spectrum typically within 1 kHz of the transmitter (or pump) frequency. SEE is due to nonlinear processes leading to re-radiation at frequencies other than the pump wave frequency during heating the ionospheric plasma with high power HF radio waves. Although NSEE exhibits a richly complex structure, it has now been shown after a substantial number of observations at HAARP, that NSEE can be grouped into two basic classes. The first are those spectral features, associated with Stimulated Brillouin Scatter SBS, which typically occur when the pump frequency is not close to electron gyro-harmonic frequencies. Typically, these spectral features are within roughly 50 Hz of the pump wave frequency where it is to be noted that the O+ ion gyro-frequency is roughly 50 Hz. The second class of spectral features corresponds to the case when the pump wave frequency is typically within roughly 10 kHz of electron gyro-harmonic frequencies. In this case, spectral features ordered by harmonics of ion gyro-frequencies are typically observed, and termed Stimulated Ion Bernstein Scatter SIBS. This presentation will first provide an overview of the recent NSEE experimental observations at HAARP. Both Stimulated Brillouin Scatter SBS and Stimulated Ion Bernstein Scatter SIBS observations will be discussed as well as their relationship to each other. Possible theoretical formulation in terms of parametric decay instabilities and computational modeling will be provided. Possible applications of NSEE will be pointed out including triggering diagnostics for artificial ionization layer formation, proton precipitation event diagnostics, electron temperature measurements in the heated volume and detection of heavy ion species. Finally potential for observing such SEE at the European Incoherent Scatter EISCAT facility will be discussed.

Lake Superior as seen from Skylab

NASA Image and Video Library

1974-01-06

SL4-139-3953 (7 Jan. 1974) --- An oblique view of a portion of the Middle West looking northeastward toward Lake Superior and Ontario, Canada, as seen from the Skylab space station in Earth orbit. This picture was taken by one of the Skylab 4 crewmen with a hand-held 70mm Hasselblad camera using a 100mm lens. Most of the land mass in the foreground is Wisconsin. Iowa is in the lower left corner. Minnesota is at left and upper left. Ontario is in the far right background. Michigan is at right center. Note the circular-shaped feature at center left which was first observed by the Skylab 4 crewmen. The feature is 85 kilometers (55 miles) in diameter, and it is centered near 91.5 degrees west longitude and 44.5 degrees north latitude. The Mississippi River Valley forms the southwest side of the circular feature. The City of La Crosse, Wisconsin, is just south of the near side of the circle, and the Black River completes the southern and eastern part. The City of Eau Claire is at the north edge of the circle. The most likely origin of circular features of this magnitude are (1) volcanic, (2) structural, or (3) meteorite impact. The feature is not volcanic -- the rocks are the wrong type. Possibly it is structural, formed by slight warping of layered rocks into a basin or dome, followed by erosion of all but the most subtle trace of the structure. The feature could be a severely eroded meteorite impact crater. If so, a thorough study of the area may yield evidence of the extreme pressure and temperature the rocks were subjected to by the shock of an impacting meteorite. Photo credit: NASA

Detection and characterization of submesoscale eddies off the southwestern coast of Puerto Rico

NASA Astrophysics Data System (ADS)

Pomales, L.; Morell, J. M.

2016-02-01

Ubiquitous submesoscale eddies (SE) have been reported to play a major role in upper ocean stirring, mixing and littoral water circulation. Remotely sensed ocean color imagery provided the first views of coherent submesoscale features all around the Puerto Rico coast. Operational numerical models for the region such as NCOM AMSEAS (3km and 3-hours) and global HYCOM (9km and 3-hours) are not able to resolve these. Deployments of High-Frequency Radars (HFRs) off the southwest coast of Puerto Rico now make possible hourly surface current observations which allow detection and characterization of the two dimensional structure of these submesoscale features. Numerical detection of these features has been achieved by the implementation of a vector geometry identification scheme on the HFR data, which has recently led to an exploratory analysis of a cyclonic persistent SE structure. The detected cyclone had a strong well-defined inner core structure coherency and a 13.86km radius, SE was manually confirmed using USF's Alternative Floating Algae Index satellite imagery (1km and daily), which showed the detected eddy center location had an offset of <8km from the real eddy center which was estimated thanks to a patch of floating algae, presumably Sargassum sp., entrained in its center. NCOM AMSEAS or HYCOM did not resolve the observed SE. Further work will focus on the 3D description of these SEs. HFR vector fields, XBT's, CTD's and Glider profile data will be used to characterize the horizontal and vertical extent of the dynamics involved with these SEs.

Automatic Synthesis of Panoramic Radiographs from Dental Cone Beam Computed Tomography Data.

PubMed

Luo, Ting; Shi, Changrong; Zhao, Xing; Zhao, Yunsong; Xu, Jinqiu

2016-01-01

In this paper, we propose an automatic method of synthesizing panoramic radiographs from dental cone beam computed tomography (CBCT) data for directly observing the whole dentition without the superimposition of other structures. This method consists of three major steps. First, the dental arch curve is generated from the maximum intensity projection (MIP) of 3D CBCT data. Then, based on this curve, the long axial curves of the upper and lower teeth are extracted to create a 3D panoramic curved surface describing the whole dentition. Finally, the panoramic radiograph is synthesized by developing this 3D surface. Both open-bite shaped and closed-bite shaped dental CBCT datasets were applied in this study, and the resulting images were analyzed to evaluate the effectiveness of this method. With the proposed method, a single-slice panoramic radiograph can clearly and completely show the whole dentition without the blur and superimposition of other dental structures. Moreover, thickened panoramic radiographs can also be synthesized with increased slice thickness to show more features, such as the mandibular nerve canal. One feature of the proposed method is that it is automatically performed without human intervention. Another feature of the proposed method is that it requires thinner panoramic radiographs to show the whole dentition than those produced by other existing methods, which contributes to the clarity of the anatomical structures, including the enamel, dentine and pulp. In addition, this method can rapidly process common dental CBCT data. The speed and image quality of this method make it an attractive option for observing the whole dentition in a clinical setting.

Biomechanical and Structural Features of CS2 Fimbriae of Enterotoxigenic Escherichia coli

PubMed Central

Mortezaei, Narges; Singh, Bhupender; Zakrisson, Johan; Bullitt, Esther; Andersson, Magnus

2015-01-01

Enterotoxigenic Escherichia coli (ETEC) are a major cause of diarrhea worldwide, and infection of children in under-developed countries often leads to high mortality rates. Isolated ETEC expresses a plethora of colonization factors (fimbriae/pili), of which CFA/I and CFA/II, which are assembled via the alternate chaperone pathway (ACP), are among the most common. Fimbriae are filamentous structures whose shafts are primarily composed of helically arranged single pilin-protein subunits, with a unique biomechanical ability to unwind and rewind. A sustained ETEC infection, under adverse conditions of dynamic shear forces, is primarily attributed to this biomechanical feature of ETEC fimbriae. Recent understanding about the role of fimbriae as virulence factors points to an evolutionary adaptation of their structural and biomechanical features. In this work, we investigated the biophysical properties of CS2 fimbriae from the CFA/II group. Homology modeling of its major structural subunit, CotA, reveals structural clues related to the niche in which they are expressed. Using optical-tweezers force spectroscopy, we found that CS2 fimbriae unwind at a constant force of 10 pN and have a corner velocity (i.e., the velocity at which the force required for unwinding rises exponentially with increased speed) of 1300 nm/s. The biophysical properties of CS2 fimbriae assessed in this work classify them into a low-force unwinding group of fimbriae together with the CFA/I and CS20 fimbriae expressed by ETEC strains. The three fimbriae are expressed by ETEC, colonize in similar gut environments, and exhibit similar biophysical features, but differ in their biogenesis. Our observation suggests that the environment has a strong impact on the biophysical characteristics of fimbriae expressed by ETEC. PMID:26153701

Dynamic Moss Observed with Hi-C

NASA Technical Reports Server (NTRS)

Alexander, Caroline; Winebarger, Amy; Morton, Richard; Savage, Sabrina

2014-01-01

The High-resolution Coronal Imager (Hi-C), flown on 11 July 2012, has revealed an unprecedented level of detail and substructure within the solar corona. Hi-­-C imaged a large active region (AR11520) with 0.2-0.3'' spatial resolution and 5.5s cadence over a 5 minute period. An additional dataset with a smaller FOV, the same resolution, but with a higher temporal cadence (1s) was also taken during the rocket flight. This dataset was centered on a large patch of 'moss' emission that initially seemed to show very little variability. Image processing revealed this region to be much more dynamic than first thought with numerous bright and dark features observed to appear, move and disappear over the 5 minute observation. Moss is thought to be emission from the upper transition region component of hot loops so studying its dynamics and the relation between the bright/dark features and underlying magnetic features is important to tie the interaction of the different atmospheric layers together. Hi-C allows us to study the coronal emission of the moss at the smallest scales while data from SDO/AIA and HMI is used to give information on these structures at different heights/temperatures. Using the high temporal and spatial resolution of Hi-C the observed moss features were tracked and the distribution of displacements, speeds, and sizes were measured. This allows us to comment on both the physical processes occurring within the dynamic moss and the scales at which these changes are occurring.

Dynamic Moss Observed with Hi-C

NASA Technical Reports Server (NTRS)

Alexander, Caroline; Winebarger, Amy; Morton, Richard; Savage, Sabrina

2014-01-01

The High-resolution Coronal Imager (Hi-C), flown on 11 July 2012, has revealed an unprecedented level of detail and substructure within the solar corona. Hi-C imaged a large active region (AR11520) with 0.2-0.3'' spatial resolution and 5.5s cadence over a 5 minute period. An additional dataset with a smaller FOV, the same resolution, but with a higher temporal cadence (1s) was also taken during the rocket flight. This dataset was centered on a large patch of 'moss' emission that initially seemed to show very little variability. Image processing revealed this region to be much more dynamic than first thought with numerous bright and dark features observed to appear, move and disappear over the 5 minute observation. Moss is thought to be emission from the upper transition region component of hot loops so studying its dynamics and the relation between the bright/dark features and underlying magnetic features is important to tie the interaction of the different atmospheric layers together. Hi-C allows us to study the coronal emission of the moss at the smallest scales while data from SDO/AIA and HMI is used to give information on these structures at different heights/temperatures. Using the high temporal and spatial resolution of Hi-C the observed moss features were tracked and the distribution of displacements, speeds, and sizes were measured. This allows us to comment on both the physical processes occurring within the dynamic moss and the scales at which these changes are occurring.

Modélisation magnétotellurique de la structure géologique profonde de l’unité granulitique de l’In Ouzzal (Hoggar occidental)

NASA Astrophysics Data System (ADS)

Bouzid, Abderrezak; Akacem, Nouredine; Hamoudi, Mohamed; Ouzegane, Khadidja; Abtout, Abdeslam; Kienast, Jean-Robert

2008-11-01

Magnetotelluric modeling of the deep geologic structure of In Ouzzal Granulitic Unit (western Hoggar). The In Ouzzal Granulitic Unit (IOGU) or In Ouzzal Terrane (IOT) is an Archaean block belonging to the Hoggar terrane mosaic. It has been reworked during the Eburnean and is characterized by ultrahigh temperature metamorphism of the structures, which are likely to be old dome and basin structures. The aim of this study, based on a survey of 12 magnetotelluric (MT) soundings, was to characterize the IOGU deep lateral boundaries and to see if it is possible to reconstruct some of these old dome and basin structures after their transformation by metamorphism and deformation. MT data analysis and modeling show that IOGU boundaries extend downwards, at least down to the crust's basement, and may represent suture zones. Inside the terrane, the MT observations do not allow separation between dome and basin structures, because these features are severely stretched. However, the main MT transverse response feature is a deeply rooted great accident, which may be interpreted as a major fault that separates IOGU into two compartments.

Weak conservation of structural features in the interfaces of homologous transient protein–protein complexes

PubMed Central

Sudha, Govindarajan; Singh, Prashant; Swapna, Lakshmipuram S; Srinivasan, Narayanaswamy

2015-01-01

Residue types at the interface of protein–protein complexes (PPCs) are known to be reasonably well conserved. However, we show, using a dataset of known 3-D structures of homologous transient PPCs, that the 3-D location of interfacial residues and their interaction patterns are only moderately and poorly conserved, respectively. Another surprising observation is that a residue at the interface that is conserved is not necessarily in the interface in the homolog. Such differences in homologous complexes are manifested by substitution of the residues that are spatially proximal to the conserved residue and structural differences at the interfaces as well as differences in spatial orientations of the interacting proteins. Conservation of interface location and the interaction pattern at the core of the interfaces is higher than at the periphery of the interface patch. Extents of variability of various structural features reported here for homologous transient PPCs are higher than the variation in homologous permanent homomers. Our findings suggest that straightforward extrapolation of interfacial nature and inter-residue interaction patterns from template to target could lead to serious errors in the modeled complex structure. Understanding the evolution of interfaces provides insights to improve comparative modeling of PPC structures. PMID:26311309

Micro and sub-micron surface structuring of AZ31 by laser re-melting and dimpling

NASA Astrophysics Data System (ADS)

Furlan, Valentina; Demir, Ali Gökhan; Previtali, Barbara

2015-12-01

In this work, the use of ns-pulsed fibre laser for surface structuring of AZ31 Mg alloy is investigated. Surface re-melting was employed to change surface morphology, especially in terms of surface roughness. Dimpling by percussion microdrilling was investigated to control the hole geometry.. With surface remelting mono-directional and homogeneous surfaces were obtained with Fl<500 J/cm2. Above 500 J/cm2 particle generation was observed, which induced sub-micron structure growth with nano-fibrous features. Moreover, surface roughness could be controlled below the initial value and much higher. With dimpling, transformation from gentle to strong ablation was observed at F0=10.3 J/cm2. XRD analysis was employed to link oxide growth to the surface morphology. Tensile tests were carried out to assess the damage on the mechanical properties after surface structuring.

Reproduction of microseism H/V spectral features using a three-dimensional complex topographical model of the sediment-bedrock interface in the Osaka sedimentary basin

NASA Astrophysics Data System (ADS)

Uebayashi, Hirotoshi; Kawabe, Hidenori; Kamae, Katsuhiro

2012-05-01

Estimating the velocity structure of microseisms based on the horizontal-to-vertical spectral ratio (HVSR) is an extremely practical means of modelling the subsurface structure necessary for strong ground motion predictions. Thus, beyond the traditional framework of the 1-D velocity structure, the HVSR, derived from observation records of microseisms (microtremors with a frequency of about 1 Hz or lower originating from ocean waves) in areas where the sediment-bedrock interface has irregular topographies, was reproduced by finite differential method (FDM)-based simulation. This study was conducted for the Osaka sedimentary basin, the sediment-bedrock interface of which is three-dimensionally complicated and contains grabens, steps and ramps, because high-precision models for this basin have been constructed based on a wide range of existing exploration information. The HVSRs of two components (the east-west direction and the north-south direction to the vertical direction) derived from the FDM simulations were both well reproduced in terms of not only the peak frequency (HVfp) but also the spectral curves for a number of observation sites above the sediment-bedrock interface with complex geological features. These results suggest that with a sufficient number of observation sites for microtremors and highly accurate a priori information on geophysical constants in the sedimentary layer that spatially serves as the reference, the irregular-shaped sediment-bedrock interface may be estimated based on how well the HVSR curves and the HVfp agree between the observations and simulations. Furthermore, the FDM simulations confirmed observed phenomena such as the polarization of the amplitude of horizontal motions and broad or 'plateau-like' HVSR peaks of microseisms in grabens and step structures. It was determined that the HVfps in areas with these strong irregularities are higher than the peak frequency of Rayleigh wave ellipticity for the fundamental mode (RHVfp) based on the 1-D velocity structure. In addition, there was a difference of about 20 per cent at most between the HVfp derived from FDM simulations and the RHVfp in areas where the depth of the sediment-bedrock interface varies only slightly.

Features on Venus generated by plate boundary processes

NASA Technical Reports Server (NTRS)

Mckenzie, Dan; Ford, Peter G.; Johnson, Catherine; Parsons, Barry; Sandwell, David; Saunders, Stephen; Solomon, Sean C.

1992-01-01

Various observations suggest that there are processes on Venus that produce features similar to those associated with plate boundaries on earth. Synthetic aperture radar images of Venus, taken with a radar whose wavelength is 12.6 cm, are compared with GLORIA images of active plate boundaries, obtained with a sound source whose wavelength is 23 cm. Features similar to transform faults and to abyssal hills on slow and fast spreading ridges can be recognized within the Artemis region of Venus but are not clearly visible elsewhere. The composition of the basalts measured by the Venera 13 and 14 and the Vega 2 spacecraft corresponds to that expected from adiabatic decompression, like that which occurs beneath spreading ridges on earth. Structures that resemble trenches are widespread on Venus and show the same curvature and asymmetry as they do on earth. These observations suggest that the same simple geophysical models that have been so successfully used to understand the tectonics of earth can also be applied to Venus.

Exploring the Surface of Titan with Cassini-Huygens

NASA Astrophysics Data System (ADS)

Turtle, E. P.; Barnes, J.; Buratti, B. J.; Collins, G.; Fussner, S.; Lopes, R.; Lorenz, R. D.; Lunine, J. I.; McCord, T. B.; McEwen, A. S.; Nelson, R.; Perry, J.; Porco, C. C.; Soderblom, L.; Sotin, C.; Wall, S. D.

2005-12-01

Over the past year, the Cassini-Huygens mission has returned a wealth of data about the surface of Saturn's satellite Titan. Cassini's Imaging Science Subsystem (ISS), RADAR, and Visual and Infrared Mapping Spectrometer (VIMS), and Huygens' Descent Imaging Spectral Radiometer (DISR) have revealed an intriguing surface that is at once familiar and alien. Although water-ice and liquid hydrocarbons play the roles that rock and water play on Earth, the surface appears to have been worked by a wide variety of processes resulting in a seemingly Earth-like balance of fluvial, aeolian, and volcanic features, with relatively few impact craters. There seem to be at least two classes of surface material: dark areas (at visible-IR wavelengths) that are spectrally consistent with contaminated water ice, and brighter areas of unknown composition which show greater variations. The expected bodies of liquids have yet to be definitively identified; however, circumstantial evidence for liquids having acted upon the surface in Titan's past is abundant, primarily in the form of channels, and possible ponds or lakes, which have been observed by multiple instruments. Other features suggest that wind redistributes some surface materials, most likely the detritus of the complex atmospheric chemistry, creating diffuse IR-bright deposits and long, narrow, radar-dark (2.2-cm) stripes, all of which trend generally east-west. Only two impact structures have been identified to date, although several other suspiciously circular features have been documented. A variety of the morphologies observed bear strong resemblances to volcanic structures. A number of other features remain mysterious and further co-analysis of these data sets, as well as the anticipated acquisition of more data, will be needed to fully understand the nature of Titan's surface, the albedo variations observed at different wavelengths, and the processes that have acted upon it (and may continue to). In addition to the Huygens descent, the Cassini orbiter has observed Titan on six close passes to date, and two more are planned for Fall 2005 which will increase both the spatial coverage, at various wavelengths, and the time base over which observations have been made as northern-hemisphere spring approaches. We will present observations of Titan's surface acquired by the complementary suite of instruments on board Cassini-Huygens, the combination of which is proving essential to interpreting Titan's geology.

A Statistical Test of the Relationship between Galactic HI Structure and Small-scale Structure in the Cosmic Microwave Background

NASA Astrophysics Data System (ADS)

Verschuur, Gerrit L.

2014-06-01

The archive of IRIS, PLANCK and WMAP data available at the IRSA website of IPAC allows the apparent associations between galactic neutral hydrogen (HI) features and small-scale structure in WMAP and PLANCK data to be closely examined. In addition, HI new observations made with the Green Bank Telescope are used to perform a statistical test of putative associations. It is concluded that attention should be paid to the possibility that some of the small-scale structure found in WMAP and PLANCK data harbors the signature of a previously unrecognized source of high-frequency continuum emission in the Galaxy.

Charge order-superfluidity transition in a two-dimensional system of hard-core bosons and emerging domain structures

NASA Astrophysics Data System (ADS)

Moskvin, A. S.; Panov, Yu. D.; Rybakov, F. N.; Borisov, A. B.

2017-11-01

We have used high-performance parallel computations by NVIDIA graphics cards applying the method of nonlinear conjugate gradients and Monte Carlo method to observe directly the developing ground state configuration of a two-dimensional hard-core boson system with decrease in temperature, and its evolution with deviation from a half-filling. This has allowed us to explore unconventional features of a charge order—superfluidity phase transition, specifically, formation of an irregular domain structure, emergence of a filamentary superfluid structure that condenses within of the charge-ordered phase domain antiphase boundaries, and formation and evolution of various topological structures.

New features of recording equipment based on photothermoplastic medium for earth observation from space

NASA Astrophysics Data System (ADS)

Rotaru, V. K.

2017-11-01

Photothermoplastic medium (PTPM) is a non-silver two-layer, semiconductor-thermoplastic, structure for optical data recording, which is radiative resistant. It allows to record photographic, holographic and other kinds of optical data without any wet chemical development that giving the maximal economic effect for Space and airborn usage.

Dramatic Change in Jupiter's Great Red Spot

NASA Technical Reports Server (NTRS)

Simon, A. A.; Wong, M. H.; Rogers, J. H.; Orton, G. S.; de Pater, I.; Asay-Davis, X.; Carlson, R. W.; Marcus, P. S.

2015-01-01

Jupiter's Great Red Spot (GRS) is one of its most distinct and enduring features, having been continuously observed since the 1800's. It currently spans the smallest latitude and longitude size ever recorded. Here we show analyses of 2014 Hubble spectral imaging data to study the color, structure and internal dynamics of this long-live storm.

Doppler-free satellites of resonances of electromagnetically induced transparency and absorption on the D 2 lines of alkali metals

NASA Astrophysics Data System (ADS)

Sargsyan, A.; Sarkisyan, D.; Staedter, D.; Akulshin, A. M.

2006-11-01

The peculiarities of intra-Doppler structures that are observed in the atomic absorption spectrum of alkali metals with the help of two independent lasers have been studied. These structures accompany ultranarrow coherent resonances of electromagnetically induced transparency and absorption. With the D 2 line of rubidium taken as an example, it is shown that, in the scheme of unidirectional waves, the maximum number of satellite resonances caused by optical pumping selective with respect to the atomic velocity is equal to seven, while only six resonances are observed in the traditional scheme of saturated absorption with counterpropagating waves of the same frequency. The spectral position of the resonances and their polarity depend on the frequency of the saturating radiation, while their number and relative amplitude depend also on the experimental geometry. These features are of general character and should show themselves in the absorption spectrum on the D 2 lines of all alkali metals. An explanation of these features is given. The calculated spectral separations between the resonances are compared to the experimental ones, and their possible application is discussed.

How have changes in front air bag designs affected frontal crash death rates? An update.

PubMed

Teoh, Eric R

2014-01-01

Provide updated death rates comparing latest generations of frontal air bags in fatal crashes. Rates of driver and right-front passenger deaths in frontal crashes per 10 million registered vehicle years were compared using Poisson marginal structural models for passenger vehicles equipped with air bags certified as advanced and compliant (CAC), sled-certified air bags with advanced features, and sled-certified air bags without any advanced features. Analyses of driver death rates were disaggregated by age group, gender, and belt use. CAC air bags were associated with slightly elevated frontal crash death rates for both drivers and right-front passengers compared to sled-certified air bags with advanced features, but the differences were not statistically significant. Sled-certified air bags with advanced features were associated with significant benefits for drivers and for right-front passengers compared to sled-certified air bags without advanced features. CAC air bags were associated with a significant increase in belted driver death rate and a comparable but nonsignificant decrease in unbelted driver death rate compared to sled-certified air bags with advanced features. Sled-certified air bags with advanced features were associated with a nonsignificant 2 percent increase in belted driver death rate and a significant 26 percent decrease in unbelted driver death rate, relative to sled-certified air bags without advanced features. Implementing advanced features in sled-certified air bags was beneficial overall to drivers and right-front passengers with sled-certified air bags. No overall benefit was observed for CAC air bags compared to sled-certified air bags with advanced features. Further study is needed to understand the apparent reduction in belted driver protection observed for CAC air bags.

A comparative study of sequence- and structure-based features of small RNAs and other RNAs of bacteria.

PubMed

Barik, Amita; Das, Santasabuj

2018-01-02

Small RNAs (sRNAs) in bacteria have emerged as key players in transcriptional and post-transcriptional regulation of gene expression. Here, we present a statistical analysis of different sequence- and structure-related features of bacterial sRNAs to identify the descriptors that could discriminate sRNAs from other bacterial RNAs. We investigated a comprehensive and heterogeneous collection of 816 sRNAs, identified by northern blotting across 33 bacterial species and compared their various features with other classes of bacterial RNAs, such as tRNAs, rRNAs and mRNAs. We observed that sRNAs differed significantly from the rest with respect to G+C composition, normalized minimum free energy of folding, motif frequency and several RNA-folding parameters like base-pairing propensity, Shannon entropy and base-pair distance. Based on the selected features, we developed a predictive model using Random Forests (RF) method to classify the above four classes of RNAs. Our model displayed an overall predictive accuracy of 89.5%. These findings would help to differentiate bacterial sRNAs from other RNAs and further promote prediction of novel sRNAs in different bacterial species.

Influence of point defects on the near edge structure of hexagonal boron nitride

NASA Astrophysics Data System (ADS)

McDougall, Nicholas L.; Partridge, Jim G.; Nicholls, Rebecca J.; Russo, Salvy P.; McCulloch, Dougal G.

2017-10-01

Hexagonal boron nitride (hBN) is a wide-band-gap semiconductor with applications including gate insulation layers in graphene transistors, far-ultraviolet light emitting devices and as hydrogen storage media. Due to its complex microstructure, defects in hBN are challenging to identify. Here, we combine x-ray absorption near edge structure (XANES) spectroscopy with ab initio theoretical modeling to identify energetically favorable defects. Following annealing of hBN samples in vacuum and oxygen, the B and N K edges exhibited angular-dependent peak modifications consistent with in-plane defects. Theoretical calculations showed that the energetically favorable defects all produce signature features in XANES. Comparing these calculations with experiments, the principle defects were attributed to substitutional oxygen at the nitrogen site, substitutional carbon at the boron site, and hydrogen passivated boron vacancies. Hydrogen passivation of defects was found to significantly affect the formation energies, electronic states, and XANES. In the B K edge, multiple peaks above the major 1 s to π* peak occur as a result of these defects and the hydrogen passivated boron vacancy produces the frequently observed doublet in the 1 s to σ* transition. While the N K edge is less sensitive to defects, features attributable to substitutional C at the B site were observed. This defect was also calculated to have mid-gap states in its band structure that may be responsible for the 4.1-eV ultraviolet emission frequently observed from this material.

Numerical Simulations of a Jovian Ribbon-like Feature

NASA Astrophysics Data System (ADS)

Morales-Juberias, R.; Simon-Miller, A. A.; Dowling, T. E.; Sayanagi, K. M.; Choi, D. S.

2013-12-01

HST observations show the presence of a Ribbon like feature in Jupiter's atmosphere at ≈ 30 degrees North. The presence of this feature seems to correlate with periods when the jet amplitude velocities are highest. Studies of motions can help to determine the nature of the feature. Its detailed structure will be studied using Hubble data at multiple wavelengths and it may be possible to reprocess the long global movies of the Voyager era to study motions at this latitude. Preliminary model results without forcing show that the morphology of the produced instabilities is dependent on the conditions of the background flow and static stability of the atmosphere. Different forcing terms will be used to study the variable nature of this feature. We use numerical simulations to investigate the instabilities produced by different kinds of forcing on the westward jet centered at ≈ 30 degrees North in Jupiter's atmosphere as well as in its two flanking eastward jets to the north and south. Our goal is to understand how the background flow and static stability of the atmosphere affect the ability of the model to reproduce the Ribbon-like cloud pattern observed in Hubble Space Telescope (HST) images of that latitude taken in support of the 2007 New Horizons Jupiter flyby.

On the Origin of Wind Line Variability in O Stars

NASA Astrophysics Data System (ADS)

Massa, D.; Prinja, R. K.

2015-08-01

We analyze 10 UV time series for five stars that fulfill specific sampling and spectral criteria to constrain the origin of large-scale wind structure in O stars. We argue that excited state lines must arise close to the stellar surface and are an excellent diagnostic complement to resonance lines which, due to radiative transfer effects, rarely show variability at low velocity. Consequently, we splice dynamic spectra of the excited state line N iv λ1718 at low velocity with those of Si iv λ λ 1400 at high velocity in order to examine the temporal evolution of wind line features. These spliced time series reveal that nearly all of the features observed in the time series originate at or very near the stellar surface. Furthermore, we positively identify the observational signature of equatorial corotating interaction regions in two of the five stars and possibly two others. In addition, we see no evidence of features originating further out in the wind. We use our results to confirm the fact that the features seen in dynamic spectra must be huge in order to remain in the line of sight for days, persisting to very large velocity, and that the photospheric footprint of the features must also be quite large, ˜15%-20% of the stellar diameter.

Structural features based genome-wide characterization and prediction of nucleosome organization

PubMed Central

2012-01-01

Background Nucleosome distribution along chromatin dictates genomic DNA accessibility and thus profoundly influences gene expression. However, the underlying mechanism of nucleosome formation remains elusive. Here, taking a structural perspective, we systematically explored nucleosome formation potential of genomic sequences and the effect on chromatin organization and gene expression in S. cerevisiae. Results We analyzed twelve structural features related to flexibility, curvature and energy of DNA sequences. The results showed that some structural features such as DNA denaturation, DNA-bending stiffness, Stacking energy, Z-DNA, Propeller twist and free energy, were highly correlated with in vitro and in vivo nucleosome occupancy. Specifically, they can be classified into two classes, one positively and the other negatively correlated with nucleosome occupancy. These two kinds of structural features facilitated nucleosome binding in centromere regions and repressed nucleosome formation in the promoter regions of protein-coding genes to mediate transcriptional regulation. Based on these analyses, we integrated all twelve structural features in a model to predict more accurately nucleosome occupancy in vivo than the existing methods that mainly depend on sequence compositional features. Furthermore, we developed a novel approach, named DLaNe, that located nucleosomes by detecting peaks of structural profiles, and built a meta predictor to integrate information from different structural features. As a comparison, we also constructed a hidden Markov model (HMM) to locate nucleosomes based on the profiles of these structural features. The result showed that the meta DLaNe and HMM-based method performed better than the existing methods, demonstrating the power of these structural features in predicting nucleosome positions. Conclusions Our analysis revealed that DNA structures significantly contribute to nucleosome organization and influence chromatin structure and gene expression regulation. The results indicated that our proposed methods are effective in predicting nucleosome occupancy and positions and that these structural features are highly predictive of nucleosome organization. The implementation of our DLaNe method based on structural features is available online. PMID:22449207

The circular Uneged Uul structure (East Gobi Basin, Mongolia) - Geomorphic and structural evidence for meteorite impact into an unconsolidated coarse-clastic target?

NASA Astrophysics Data System (ADS)

Schmieder, Martin; Seyfried, Hartmut; Gerel, Ochir

2013-03-01

The Uneged Uul structure is a ˜10 km circular, complex, multi-ridged domal feature in the Unegt subbasin of the East Gobi Basin, southeastern Mongolia. As revealed by remote sensing and recent field reconnaissance, the central part of the Uneged Uul structure comprises a complex central peak of outward-radiating curved ridges, composed of stratigraphically uplifted greenschist-facies basement schists, surrounded by an annular moat. The most prominent feature of the structure is a central annular ridge ˜3 km in diameter composed of pebble-boulder conglomerates and gravels of the Upper Jurassic Sharilyn Formation, surrounded by three outer domal ridges composed of Lower Cretaceous conglomeratic sandstones and gypsum clays. Jurassic conglomerates forming the main part of the central annular ridge show effects of severe internal deformation. The original population of pebbles, cobbles and boulders appears moderately displaced and mostly broken but nowhere aligned along shear planes or foliated. Primary sedimentary features, such as cross-lamination or imbrication, have been obliterated. We explain this penetrative brecciation as a result of dissipative shearing caused by a strong and rapid singular event that in magnitude was beyond the range of the common crustal tectonics recorded elsewhere in this region. Disrupted and chaotically distributed conglomeratic sandstone beds in the central annular ridge dip in highly variable directions on a local scale but show an apparent SE-NW trend of bedding plane alignment. Further outside, the tilted and uplifted Upper Jurassic to Lower Cretaceous strata of the domal area are overlain by the flat-lying Upper Cretaceous, which stratigraphically constrains the timing of deformation at the Uneged Uul structure to most likely the Early Cretaceous. Endogenic formation models, such as magmatism and salt, gypsum, or mud diapirism, fail to explain the nature of the Uneged Uul structure. The Uneged Uul structure bears a set of geomorphic and structural features resembling those at some eroded complex impact structures on Earth. Morphologically similar central peaks are observed at the Spider and Matt Wilson impact structures in Australia; the central annular ridge reminds of that at Gosses Bluff in Australia; the outer domal ridges might correspond to ring-like features as known from Tin Bider in Algeria. We, therefore, cautiously propose that an impact may have produced the Uneged Uul feature causing structural uplift (˜1000 m) of basement rocks at its center. So far, no convincing evidence for shock metamorphism could be proven by field work and petrographic analyses. However, it is likely that at the time of the deformation event the unconsolidated conglomerates were highly porous and possibly immersed in groundwater buffering the propagation of sudden stress-reducing deformation. Further studies will be in order to unravel the nature of the Uneged Uul structure, which should be considered a promising possible impact structure.

High-Temperature Magnetism as a Probe for Structural and Compositional Uniformity in Ligand-Capped Magnetite Nanoparticles

PubMed Central

2015-01-01

To investigate magnetostructural relationships in colloidal magnetite (Fe3O4) nanoparticles (NPs) at high temperature (300–900 K), we measured the temperature dependence of magnetization (M) of oleate-capped magnetite NPs ca. 20 nm in size. Magnetometry revealed an unusual irreversible high-temperature dependence of M for these NPs, with dip and loop features observed during heating–cooling cycles. Detailed characterizations of as-synthesized and annealed Fe3O4 NPs as well as reference ligand-free Fe3O4 NPs indicate that both types of features in M(T) are related to thermal decomposition of the capping ligands. The ligand decomposition upon the initial heating induces a reduction of Fe3+ to Fe2+ and the associated dip in M, leading to more structurally and compositionally uniform magnetite NPs. Having lost the protective ligands, the NPs continually sinter during subsequent heating cycles, resulting in divergent M curves featuring loops. The increase in M with sintering proceeds not only through elimination of a magnetically dead layer on the particle surface, as a result of a decrease in specific surface area with increasing size, but also through an uncommonly invoked effect resulting from a significant change in Fe3+/Fe2+ ratio with heat treatment. The interpretation of irreversible features in M(T) indicates that reversible M(T) behavior, conversely, can be expected only for ligand-free, structurally and compositionally uniform magnetite NPs, suggesting a general applicability of high-temperature M(T) measurements as an analytical method for probing the structure and composition of magnetic nanomaterials. PMID:25506407

Application of PALSAR-2 remote sensing data for structural geology and topographic mapping in Kelantan river basin, Malaysia

NASA Astrophysics Data System (ADS)

Beiranvand Pour, Amin; Hashim, Mazlan

2016-06-01

Natural hazards of geological origin are one of major problem during heavy monsoons rainfall in Kelantan state, peninsular Malaysia. Several landslides occur in this region are obviously connected to geological and topographical features, every year. Satellite synthetic aperture radar (SAR) data are particularly applicable for detection of geological structural and topographical features in tropical conditions. In this study, Phased Array type L-band Synthetic Aperture Radar (PALSAR-2), remote sensing data were used to identify high potential risk and susceptible zones for landslide in the Kelantan river basin. Adaptive Local Sigma filter was selected and applied to accomplish speckle reduction and preserving both edges and features in PALSAR-2 fine mode observation images. Different polarization images were integrated to enhance geological structures. Additionally, directional filters were applied to the PALSAR-2 Local Sigma resultant image for edge enhancement and detailed identification of linear features. Several faults, drainage patterns and lithological contact layers were identified at regional scale. In order to assess the results, fieldwork and GPS survey were conducted in the landslide affected zones in the Kelantan river basin. Results demonstrate the most of the landslides were associated with N-S, NNW-SSE and NE-SW trending faults, angulate drainage pattern and metamorphic and Quaternary units. Consequently, geologic structural map were produced for Kelantan river basin using recent PALSAR-2 data, which could be broadly applicable for landslide hazard assessment and delineation of high potential risk and susceptible areas. Landslide mitigation programmes could be conducted in the landslide recurrence regions for reducing catastrophes leading to economic losses and death.

Observing and modelling phytoplankton community structure in the North Sea

NASA Astrophysics Data System (ADS)

Ford, David A.; van der Molen, Johan; Hyder, Kieran; Bacon, John; Barciela, Rosa; Creach, Veronique; McEwan, Robert; Ruardij, Piet; Forster, Rodney

2017-03-01

Phytoplankton form the base of the marine food chain, and knowledge of phytoplankton community structure is fundamental when assessing marine biodiversity. Policy makers and other users require information on marine biodiversity and other aspects of the marine environment for the North Sea, a highly productive European shelf sea. This information must come from a combination of observations and models, but currently the coastal ocean is greatly under-sampled for phytoplankton data, and outputs of phytoplankton community structure from models are therefore not yet frequently validated. This study presents a novel set of in situ observations of phytoplankton community structure for the North Sea using accessory pigment analysis. The observations allow a good understanding of the patterns of surface phytoplankton biomass and community structure in the North Sea for the observed months of August 2010 and 2011. Two physical-biogeochemical ocean models, the biogeochemical components of which are different variants of the widely used European Regional Seas Ecosystem Model (ERSEM), were then validated against these and other observations. Both models were a good match for sea surface temperature observations, and a reasonable match for remotely sensed ocean colour observations. However, the two models displayed very different phytoplankton community structures, with one better matching the in situ observations than the other. Nonetheless, both models shared some similarities with the observations in terms of spatial features and inter-annual variability. An initial comparison of the formulations and parameterizations of the two models suggests that diversity between the parameter settings of model phytoplankton functional types, along with formulations which promote a greater sensitivity to changes in light and nutrients, is key to capturing the observed phytoplankton community structure. These findings will help inform future model development, which should be coupled with detailed validation studies, in order to help facilitate the wider application of marine biogeochemical modelling to user and policy needs.

Ensembles of novelty detection classifiers for structural health monitoring using guided waves

NASA Astrophysics Data System (ADS)

Dib, Gerges; Karpenko, Oleksii; Koricho, Ermias; Khomenko, Anton; Haq, Mahmoodul; Udpa, Lalita

2018-01-01

Guided wave structural health monitoring uses sparse sensor networks embedded in sophisticated structures for defect detection and characterization. The biggest challenge of those sensor networks is developing robust techniques for reliable damage detection under changing environmental and operating conditions (EOC). To address this challenge, we develop a novelty classifier for damage detection based on one class support vector machines. We identify appropriate features for damage detection and introduce a feature aggregation method which quadratically increases the number of available training observations. We adopt a two-level voting scheme by using an ensemble of classifiers and predictions. Each classifier is trained on a different segment of the guided wave signal, and each classifier makes an ensemble of predictions based on a single observation. Using this approach, the classifier can be trained using a small number of baseline signals. We study the performance using Monte-Carlo simulations of an analytical model and data from impact damage experiments on a glass fiber composite plate. We also demonstrate the classifier performance using two types of baseline signals: fixed and rolling baseline training set. The former requires prior knowledge of baseline signals from all EOC, while the latter does not and leverages the fact that EOC vary slowly over time and can be modeled as a Gaussian process.

Using ground penetrating radar in levee assessment to detect small scale animal burrows

NASA Astrophysics Data System (ADS)

Chlaib, Hussein K.; Mahdi, Hanan; Al-Shukri, Haydar; Su, Mehmet M.; Catakli, Aycan; Abd, Najah

2014-04-01

Levees are civil engineering structures built to protect human lives, property, and agricultural lands during flood events. To keep these important structures in a safe condition, continuous monitoring must be performed regularly and thoroughly. Small rodent burrows are one of the major defects within levees; however, their early detection and repair helps in protecting levees during flooding events. A set of laboratory experiments was conducted to analyze the polarity change in GPR signals in the presence of subsurface voids and water-filled cavities. Ground Penetrating Radar (GPR) surveys using multi frequency antennas (400 MHz and 900 MHz) were conducted along an 875 meter section of the Lollie Levee near Conway, Arkansas, USA, to assess the levee's structural integrity. Many subsurface animal burrows, water-filled cavities, clay clasts, and metallic objects were investigated and identified. These anomalies were located at different depths and have different sizes. To ground truth the observations, hand dug trenches were excavated to confirm several anomalies. Results show an excellent match between GPR interpreted anomalies and the observed features. In-situ dielectric constant measurements were used to calculate the feature depths. The results of this research show that the 900 MHz antenna has more advantages over the 400 MHz antenna.

Multiscale Processes in Magnetic Reconnection

NASA Astrophysics Data System (ADS)

Surjalal Sharma, A.; Jain, Neeraj

The characteristic scales of the plasma processes in magnetic reconnection range from the elec-tron skin-depth to the magnetohydrodynamic (MHD) scale, and cross-scale coupling among them play a key role. Modeling these processes requires different physical models, viz. kinetic, electron-magnetohydrodynamics (EMHD), Hall-MHD, and MHD. The shortest scale processes are at the electron scale and these are modeled using an EMHD code, which provides many features of the multiscale behavior. In simulations using initial conditions consisting of pertur-bations with many scale sizes the reconnection takes place at many sites and the plasma flows from these interact with each other. This leads to thin current sheets with length less than 10 electron skin depths. The plasma flows also generate current sheets with multiple peaks, as observed by Cluster. The quadrupole structure of the magnetic field during reconnection starts on the electron scale and the interaction of inflow to the secondary sites and outflow from the dominant site generates a nested structure. In the outflow regions, the interaction of the electron outflows generated at the neighboring sites lead to the development of electron vortices. A signature of the nested structure of the Hall field is seen in Cluster observations, and more details of these features are expected from MMS.

X-ray signatures: New time scales and spectral features

NASA Technical Reports Server (NTRS)

Boldt, E. A.

1977-01-01

The millisecond bursts from Cyg X-1 are investigated and the overall chaotic variability for the bulk of the Cyg X-1 emission is compared to that of Sco X-1, showing that the essential character is remarkably similar (i.e. shot noise) although the fundamental time scales involved differ widely, from a fraction of a second (for Cyg X-1) to a fraction of a day (for Sco X-1). Recent OSO-8 observations of spectra features attributable to iron are reviewed. In particular, line emission is discussed within the context of a model for thermal radiation by a hot evolved gas in systems as different as supernova remnants and clusters of galaxies. Newly observed spectral structure in the emission from the X-ray pulsar Her X-1 is reported.

Application of an automatic cloud tracking technique to Meteosat water vapor and infrared observations

NASA Technical Reports Server (NTRS)

Endlich, R. M.; Wolf, D. E.

1980-01-01

The automatic cloud tracking system was applied to METEOSAT 6.7 micrometers water vapor measurements to learn whether the system can track the motions of water vapor patterns. Data for the midlatitudes, subtropics, and tropics were selected from a sequence of METEOSAT pictures for 25 April 1978. Trackable features in the water vapor patterns were identified using a clustering technique and the features were tracked by two different methods. In flat (low contrast) water vapor fields, the automatic motion computations were not reliable, but in areas where the water vapor fields contained small scale structure (such as in the vicinity of active weather phenomena) the computations were successful. Cloud motions were computed using METEOSAT infrared observations (including tropical convective systems and midlatitude jet stream cirrus).

3D Structure of Iran and Surrounding Areas From The Simultaneous Inversion of Complementary Geophysical Observations

NASA Astrophysics Data System (ADS)

Ammon, C. J.; Maceira, M.; Cleveland, M.

2010-12-01

We present a three-dimensional seismic-structure model of the Arabian-Eurasian collision zone obtained via simultaneous, joint inversion of surface-wave dispersion measurements, teleseismic P-wave receiver functions, and gravity observations. We use a simple, approximate relationship between density and seismic velocities so that the three data sets may be combined in a single inversion. The sensitivity of the different data sets are well known: surface waves provide information on the smooth variations in elastic properties, receiver functions provide information on abrupt velocity contrasts, and gravity measurements provide information on broad-wavenumber shallow density variations and long-wavenumber components of deeper density structures. The combination of the data provides improved resolution of shallow-structure variations, which in turn help produce the smooth features at depth with less contamination from the strong heterogeneity often observed in the upper crust. We also explore geologically based smoothness constraints to help resolve sharp features in the underlying shallow 3D structure. Our focus is on the region surrounding Iran from east Turkey and Iraq in the west, to Pakistan and Afghanistan in the east. We use Bouguer gravity anomalies derived from the global gravity model extracted from the GRACE satellite mission. Surface-wave dispersion velocities in the period range between 7 and 150 s are taken from previously published tomographic maps for the region. Preliminary results show expected strong variations in the Caspian region as well as the deep sediment regions of the Persian Gulf. Regions constrained with receiver-function information generally show sharper crust-mantle boundary structure than that obtained by inversion of the surface waves alone (with thin layers and smoothing constraints). Final results of the simultaneous inversion will help us to better understand one of the most prominent examples of continental collision. Such models also provide an important starting model for time-consuming and fully 3D inversions.

A PLANETARY LENSING FEATURE IN CAUSTIC-CROSSING HIGH-MAGNIFICATION MICROLENSING EVENTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chung, Sun-Ju; Hwang, Kyu-Ha; Ryu, Yoon-Hyun

Current microlensing follow-up observations focus on high-magnification events because of the high efficiency of planet detection. However, central perturbations of high-magnification events caused by a planet can also be produced by a very close or a very wide binary companion, and the two kinds of central perturbations are not generally distinguished without time consuming detailed modeling (a planet-binary degeneracy). Hence, it is important to resolve the planet-binary degeneracy that occurs in high-magnification events. In this paper, we investigate caustic-crossing high-magnification events caused by a planet and a wide binary companion. From this investigation, we find that because of the differentmore » magnification excess patterns inside the central caustics induced by the planet and the binary companion, the light curves of the caustic-crossing planetary-lensing events exhibit a feature that is discriminated from those of the caustic-crossing binary-lensing events, and the feature can be used to immediately distinguish between the planetary and binary companions. The planetary-lensing feature appears in the interpeak region between the two peaks of the caustic-crossings. The structure of the interpeak region for the planetary-lensing events is smooth and convex or boxy, whereas the structure for the binary-lensing events is smooth and concave. We also investigate the effect of a finite background source star on the planetary-lensing feature in the caustic-crossing high-magnification events. From this, we find that the convex-shaped interpeak structure appears in a certain range that changes with the mass ratio of the planet to the planet-hosting star.« less

Feature-to-Feature Inference Under Conditions of Cue Restriction and Dimensional Correlation.

PubMed

Lancaster, Matthew E; Homa, Donald

2017-01-01

The present study explored feature-to-feature and label-to-feature inference in a category task for different category structures. In the correlated condition, each of the 4 dimensions comprising the category was positively correlated to each other and to the category label. In the uncorrelated condition, no correlation existed between the 4 dimensions comprising the category, although the dimension to category label correlation matched that of the correlated condition. After learning, participants made inference judgments of a missing feature, given 1, 2, or 3 feature cues; on half the trials, the category label was also included as a cue. The results showed superior inference of features following training on the correlated structure, with accurate inference when only a single feature was presented. In contrast, a single-feature cue resulted in chance levels of inference for the uncorrelated structure. Feature inference systematically improved with number of cues after training on the correlated structure. Surprisingly, a similar outcome was obtained for the uncorrelated structure, an outcome that must have reflected mediation via the category label. A descriptive model is briefly introduced to explain the results, with a suggestion that this paradigm might be profitably extended to hierarchical structures where the levels of feature-to-feature inference might vary with the depth of the hierarchy.

Novel chromatin texture features for the classification of pap smears

NASA Astrophysics Data System (ADS)

Bejnordi, Babak E.; Moshavegh, Ramin; Sujathan, K.; Malm, Patrik; Bengtsson, Ewert; Mehnert, Andrew

2013-03-01

This paper presents a set of novel structural texture features for quantifying nuclear chromatin patterns in cells on a conventional Pap smear. The features are derived from an initial segmentation of the chromatin into bloblike texture primitives. The results of a comprehensive feature selection experiment, including the set of proposed structural texture features and a range of different cytology features drawn from the literature, show that two of the four top ranking features are structural texture features. They also show that a combination of structural and conventional features yields a classification performance of 0.954±0.019 (AUC±SE) for the discrimination of normal (NILM) and abnormal (LSIL and HSIL) slides. The results of a second classification experiment, using only normal-appearing cells from both normal and abnormal slides, demonstrates that a single structural texture feature measuring chromatin margination yields a classification performance of 0.815±0.019. Overall the results demonstrate the efficacy of the proposed structural approach and that it is possible to detect malignancy associated changes (MACs) in Papanicoloau stain.

Imaging the magmatic system of Mono Basin, California with magnetotellurics in three--dimensions

USGS Publications Warehouse

Peacock, Jared R.; Mangan, Margaret T.; McPhee, Darcy K.; Ponce, David A.

2015-01-01

A three–dimensional (3D) electrical resistivity model of Mono Basin in eastern California unveils a complex subsurface filled with zones of partial melt, fluid–filled fracture networks, cold plutons, and regional faults. In 2013, 62 broadband magnetotelluric (MT) stations were collected in an array around southeastern Mono Basin from which a 3D electrical resistivity model was created with a resolvable depth of 35 km. Multiple robust electrical resistivity features were found that correlate with existing geophysical observations. The most robust features are two 300 ± 50 km3 near-vertical conductive bodies (3–10 Ω·m) that underlie the southeast and north-eastern margin of Mono Craters below 10 km depth. These features are interpreted as magmatic crystal–melt mush zones of 15 ± 5% interstitial melt surrounded by hydrothermal fluids and are likely sources for Holocene eruptions. Two conductive east–dipping structures appear to connect each magma source region to the surface. A conductive arc–like structure (< 0.9 Ω·m) links the northernmost mush column at 10 km depth to just below vents near Panum Crater, where the high conductivity suggests the presence of hydrothermal fluids. The connection from the southernmost mush column at 10 km depth to below South Coulée is less obvious with higher resistivity (200 Ω·m) suggestive of a cooled connection. A third, less constrained conductive feature (4–10 Ω·m) 15 km deep extending to 35 km is located west of Mono Craters near the eastern front of the Sierra Nevada escarpment, and is coincident with a zone of sporadic, long–period earthquakes that are characteristic of a fluid-filled (magmatic or metamorphic) fracture network. A resistive feature (103–105 Ω·m) located under Aeolian Buttes contains a deep root down to 25 km. The eastern edge of this resistor appears to structurally control the arcuate shape of Mono Craters. These observations have been combined to form a new conceptual model of the magmatic system beneath Mono Craters to a depth of 30 km.

Reporting of methodological features in observational studies of pre-harvest food safety.

PubMed

Sargeant, Jan M; O'Connor, Annette M; Renter, David G; Kelton, David F; Snedeker, Kate; Wisener, Lee V; Leonard, Erin K; Guthrie, Alessia D; Faires, Meredith

2011-02-01

Observational studies in pre-harvest food safety may be useful for identifying risk factors and for evaluating potential mitigation strategies to reduce foodborne pathogens. However, there are no structured reporting guidelines for these types of study designs in livestock species. Our objective was to evaluate the reporting of observational studies in the pre-harvest food safety literature using guidelines modified from the human healthcare literature. We identified 100 pre-harvest food safety studies published between 1999 and 2009. Each study was evaluated independently by two reviewers using a structured checklist. Of the 38 studies that explicitly stated the observational study design, 27 were described as cross-sectional studies, eight as case-control studies, and three as cohort studies. Study features reported in over 75% of the selected studies included: description of the geographic location of the studies, definitions and sources of data for outcomes, organizational level and source of data for independent variables, description of statistical methods and results, number of herds enrolled in the study and included in the analysis, and sources of study funding. However, other features were not consistently reported, including details related to eligibility criteria for groups (such as barn, room, or pen) and individuals, numbers of groups and individuals included in various stages of the study, identification of primary outcomes, the distinction between putative risk factors and confounding variables, the identification of a primary exposure variable, the referent level for evaluation of categorical variable associations, methods of controlling confounding variables and missing variables, model fit, details of subset analysis, demographic information at the sampling unit level, and generalizability of the study results. Improvement in reporting of observational studies of pre-harvest food safety will aid research readers and reviewers in interpreting and evaluating the results of such studies. Copyright © 2010 Elsevier B.V. All rights reserved.

Magnetospheric Multiscale Observation of Plasma Velocity-Space Cascade: Hermite Representation and Theory.

PubMed

Servidio, S; Chasapis, A; Matthaeus, W H; Perrone, D; Valentini, F; Parashar, T N; Veltri, P; Gershman, D; Russell, C T; Giles, B; Fuselier, S A; Phan, T D; Burch, J

2017-11-17

Plasma turbulence is investigated using unprecedented high-resolution ion velocity distribution measurements by the Magnetospheric Multiscale mission (MMS) in the Earth's magnetosheath. This novel observation of a highly structured particle distribution suggests a cascadelike process in velocity space. Complex velocity space structure is investigated using a three-dimensional Hermite transform, revealing, for the first time in observational data, a power-law distribution of moments. In analogy to hydrodynamics, a Kolmogorov approach leads directly to a range of predictions for this phase-space transport. The scaling theory is found to be in agreement with observations. The combined use of state-of-the-art MMS data sets, novel implementation of a Hermite transform method, and scaling theory of the velocity cascade opens new pathways to the understanding of plasma turbulence and the crucial velocity space features that lead to dissipation in plasmas.

Observations of cavity polaritons in one-dimensional photonic crystals containing a liquid-crystalline semiconductor based on perylene bisimide units

NASA Astrophysics Data System (ADS)

Sakata, T.; Suzuki, M.; Yamamoto, T.; Nakanishi, S.; Funahashi, M.; Tsurumachi, N.

2017-10-01

We investigated the optical transmission properties of one-dimensional photonic crystal (1D-PC) microcavity structures containing the liquid-crystalline (LC) perylene tetracarboxylic bisimide (PTCBI) derivative. We fabricated the microcavity structures for this study by two different methods and observed the cavity polaritons successfully in both samples. For one sample, since the PTCBI molecules were aligned in the cavity layer of the 1D-PC by utilizing a friction transfer method, vacuum Rabi splitting energy was strongly dependent on the polarization of the incident light produced by the peculiar optical features of the LC organic semiconductor. For the other sample, we did not utilize the friction transfer method and did not observe such polarization dependence. However, we did observe a relatively large Rabi splitting energy of 187 meV, probably due to the improvement of optical confinement effect.

Cometary Dust in the Debris of HD 31648 and HD163296: Two "Baby" Beta pictoris Stars

NASA Technical Reports Server (NTRS)

Sitko, Michael L.; Grady, Carol A.; Lynch, David K.; Russell, Ray W.; Hanner, Martha S.

1999-01-01

The debris disks surrounding the pre-main-sequence stars HD 31648 and HD 163296 were observed spectroscopically between 3 and 14 microns. Both stars possess a silicate emission feature at 10 Am that resembles that of the star P Pictoris and those observed in solar system comets. The structure of the band is consistent with a mixture of olivine and pyroxene material, plus an underlying continuum of unspecified origin. The similarity in both size and structure of the silicate band suggests that the material in these systems had a processing history similar to that in our own solar system prior to the time that the grains were incorporated into comets.

Cometary Dust in the Debris Disks of HD 31648 and HD 163296: Two "Baby" (BETA) Pictoris Stars

NASA Technical Reports Server (NTRS)

Sitko, Michael L.; Grady, Carol A.; Lynch, David K.; Russell, Ray W.; Hanner, Martha S.; Hanner, Martha S.

1999-01-01

The debris disks surrounding the pre-main-sequence stars HD 31648 and HD 163296 were observed spectroscopically between 3 and 14 microns. Both stars possess a silicate emission feature at 10 microns that resembles that of the star beta Pictoris and those observed in solar system comets. The structure of the band is consistent with a mixture of olivine and pyroxene material, plus an underlying continuum of unspecified origin. The similarity in both size and structure of the silicate band suggests that the material in these systems had a processing history similar to that in our own solar system prior to the time that the grains were incorporated into comets.

A comparison of coronal X-ray structures of active regions with magnetic fields computed from photospheric observations

NASA Technical Reports Server (NTRS)

Poletto, G.; Vaiana, G. S.; Zombeck, M. V.; Krieger, A. S.; Timothy, A. F.

1975-01-01

The appearances of several X-ray active regions observed on March 7, 1970 and June 15, 1973 are compared with the corresponding coronal magnetic-field topology. Coronal fields have been computed from measurements of the longitudinal component of the underlying magnetic fields, based on the current-free hypothesis. An overall correspondence between X-ray structures and calculated field lines is established, and the magnetic counterparts of different X-ray features are also examined. A correspondence between enhanced X-ray emission and the location of compact closed field lines is suggested. Representative magnetic-field values calculated under the assumption of current-free fields are given for heights up to 200 sec.

Examination of the effect of blowing on the near-surface flow structure over a dimpled surface

NASA Astrophysics Data System (ADS)

Borchetta, C. G.; Martin, A.; Bailey, S. C. C.

2018-03-01

The near surface flow over a dimpled surface with flow injection through it was documented using time-resolved particle image velocimetry. The instantaneous flow structure, time-averaged statistics, and results from snapshot proper orthogonal decomposition were used to examine the coherent structures forming near the dimpled surface. In particular, the modifications made to the flow structures by the addition of flow injection through the surface were studied. It was observed that without flow injection, inclined flow structures with alternating vorticity from neighboring dimples are generated by the dimples and advect downstream. This behavior is coupled with fluid becoming entrained inside the dimples, recirculating and ejecting away from the surface. When flow injection was introduced through the surface, the flow structures became more disorganized, but some of the features of the semi-periodic structures observed without flow injection were preserved. The structures with flow injection appear in multiple wall-normal layers, formed from vortical structures shed from upstream dimples, with a corresponding increase in the size of the advecting structures. As a result of the more complex flow field observed with flow injection, there was an increase in turbulent kinetic energy and Reynolds shear stress, with the Reynolds shear stress representing an increase in vertical transport of momentum by sweeping and ejecting motions that were not present without flow injection.

Earth Observations taken by the Expedition 15 Crew

NASA Image and Video Library

2007-06-26

ISS015-E-14584 (26 June 2007) --- The "bull's-eye" of the Richat Structure in the barren Gres de Chinguetti Plateau, central Mauritania in northwest Africa is featured in this image photographed by an Expedition 15 crewmember on the International Space Station. It represents domally uplifted, layered (sedimentary) rocks that have been eroded by water and wind into the present shape. The 25-mile-wide structure is a 300-foot-deep landmark that has caught the eye of many an astronaut in Earth orbit.

Preconstruction Engineering and Design Phase Reevaluation Report, Olcott Harbor Project, Olcott, New York. Volume 2, Supporting Documentation. Revision.

DTIC Science & Technology

1992-09-01

85 (saturated) : 0 : 26 3. Cell Fill (crushed stone) : 110 (moist) : 0 : 32 68 ( submerged ) 4. Breakwater Armor Stone : 110 (moist) : 0 40 68... submerged ) 5. Queenston Shale bedrock : unconfined compressive strength : au = 6,000 psi 7 5. PROJECT FEATURES FOR FINAL DESIGN a. Breakwaters. The project...existing conrete pad (550 feet from the retaining wall) the structure is submerged with isolated portions of the structure observable at the lake

Spatial variations in the nature of the oceanic plate in the northwestern Pacific margin

NASA Astrophysics Data System (ADS)

Fujie, G.; Kodaira, S.; Shirai, T.; Dannowski, A.; Thorwart, M.; Grevemeyer, I.; Morgan, J. P.; Miura, S.

2016-12-01

Subduction of the oceanic plate plays an important role in the various processes in subduction zones, including arc magmatism and generation of earthquakes. Thus the nature of the incoming plate, such as its relief, thermal state, lithology, and the water content, are considered to shape these subduction zone processes.In 2014 and 2015, to reveal the nature of the incoming plate in the ocean-ward area of the 2011 M9 Tohoku earthquake, we conducted wide-angle seismic surveys in the trench-outer rise region of the Japan Trench. We designed a 600 km long seismic survey line perpendicular to the trench axis and deployed 88 OBSs at intervals of 6 km and shot a tuned airgun array of R/V Kairei.We have applied a traveltime inversion to model the P-wave velocity (Vp) structure. The resulting Vp model shows that Vp within the oceanic crust and the topmost mantle decreases in the vicinity of the trench axis probably due to the plate bending. In addition, we observed low Vp at the top of the oceanic crust in the area of petit spot volcanos. The low Vp area may be related to magma intrusions because we observed several structural interfaces in the shallow area.We found two structural features that we did not anticipate. First, crustal thickness abruptly changes at around the center of our survey line ( 300-km east from the trench axis); crust thickness is 7-km in the west and 6-km in the east. Second, mantle Vp shows significant variations along the survey line, 7.5 km/s in the bend-fault area (western area), 8.0 km/s around the center, 8.5 km/s in the eastern area. Based on the shear wave splitting observed in our data set, we infer that high mantle Vp in the eastern area is related with the changes in the orientation of the mantle anisotropy. Since we do not see any remarkable topographic features indicating the off-ridge activities, we consider that these observed structural features are related with the activities near the ancient spreading ridge when the oceanic plate formed, indicating that the oceanic plate in the NW Pacific margin, the input to the northeastern Japanese island arc, is more complicated here than we previously thought.In this presentation, we will show an overview of the Vp model along the whole profile and detailed seismic structure beneath the petit-spot area derived by the P-to-S converted waves.

On the use of multiple-point statistics to improve groundwater flow modeling in karst aquifers: A case study from the Hydrogeological Experimental Site of Poitiers, France

NASA Astrophysics Data System (ADS)

Le Coz, Mathieu; Bodin, Jacques; Renard, Philippe

2017-02-01

Limestone aquifers often exhibit complex groundwater flow behaviors resulting from depositional heterogeneities and post-lithification fracturing and karstification. In this study, multiple-point statistics (MPS) was applied to reproduce karst features and to improve groundwater flow modeling. For this purpose, MPS realizations were used in a numerical flow model to simulate the responses to pumping test experiments observed at the Hydrogeological Experimental Site of Poitiers, France. The main flow behaviors evident in the field data were simulated, particularly (i) the early-time inflection of the drawdown signal at certain observation wells and (ii) the convex behavior of the drawdown curves at intermediate times. In addition, it was shown that the spatial structure of the karst features at various scales is critical with regard to the propagation of the depletion wave induced by pumping. Indeed, (i) the spatial shape of the cone of depression is significantly affected by the karst proportion in the vicinity of the pumping well, and (ii) early-time inflection of the drawdown signal occurs only at observation wells crossing locally well-developed karst features.

Content metamorphosis in synthetic holography

NASA Astrophysics Data System (ADS)

Desbiens, Jacques

2013-02-01

A synthetic hologram is an optical system made of hundreds of images amalgamated in a structure of holographic cells. Each of these images represents a point of view on a three-dimensional space which makes us consider synthetic holography as a multiple points of view perspective system. In the composition of a computer graphics scene for a synthetic hologram, the field of view of the holographic image can be divided into several viewing zones. We can attribute these divisions to any object or image feature independently and operate different transformations on image content. In computer generated holography, we tend to consider content variations as a continuous animation much like a short movie. However, by composing sequential variations of image features in relation with spatial divisions, we can build new narrative forms distinct from linear cinematographic narration. When observers move freely and change their viewing positions, they travel from one field of view division to another. In synthetic holography, metamorphoses of image content are within the observer's path. In all imaging Medias, the transformation of image features in synchronisation with the observer's position is a rare occurrence. However, this is a predominant characteristic of synthetic holography. This paper describes some of my experimental works in the development of metamorphic holographic images.

Optical observations of nearby interstellar gas

NASA Astrophysics Data System (ADS)

Frisch, P. C.; York, D. G.

1984-11-01

Observations indicated that a cloud with a heliocentric velocity of approximately -28 km/s and a hydrogen column density that possibly could be on the order of, or greater than, 5 x 10 to the 19 power/square cm is located within the nearest 50 to 80 parsecs in the direction of Ophiuchus. This is a surprisingly large column density of material for this distance range. The patchy nature of the absorption from the cloud indicates that it may not be a feature with uniform properties, but rather one with small scale structure which includes local enhancements in the column density. This cloud is probably associated with the interstellar cloud at about the same velocity in front of the 20 parsec distant star alpha Oph (Frisch 1981, Crutcher 1982), and the weak interstellar polarization found in stars as near as 35 parsecs in this general region (Tinbergen 1982). These data also indicate that some portion of the -14 km/s cloud also must lie within the 100 parsec region. Similar observations of both Na1 and Ca2 interstellar absorption features were performed in other lines of sight. Similar interstellar absorption features were found in a dozen stars between 20 and 100 parsecs of the Sun.

Optical Observations of Nearby Interstellar Gas

NASA Technical Reports Server (NTRS)

Frisch, P. C.; York, D. G.

1984-01-01

Observations indicated that a cloud with a heliocentric velocity of approximately -28 km/s and a hydrogen column density that possibly could be on the order of, or greater than, 5 x 10 to the 19 power/square cm is located within the nearest 50 to 80 parsecs in the direction of Ophiuchus. This is a surprisingly large column density of material for this distance range. The patchy nature of the absorption from the cloud indicates that it may not be a feature with uniform properties, but rather one with small scale structure which includes local enhancements in the column density. This cloud is probably associated with the interstellar cloud at about the same velocity in front of the 20 parsec distant star alpha Oph (Frisch 1981, Crutcher 1982), and the weak interstellar polarization found in stars as near as 35 parsecs in this general region (Tinbergen 1982). These data also indicate that some portion of the -14 km/s cloud also must lie within the 100 parsec region. Similar observations of both Na1 and Ca2 interstellar absorption features were performed in other lines of sight. Similar interstellar absorption features were found in a dozen stars between 20 and 100 parsecs of the Sun.

Theoretical Investigation of Anharmonic Effects Observed in the Infrared Spectra of the Formaldehyde Cation and its Hydroxymethylene Isomer

NASA Astrophysics Data System (ADS)

Madison, Lindsey R.; Mosley, Jonathan; Mauney, Daniel; Duncan, Michael A.; McCoy, Anne B.

2016-06-01

Formaldehyde is the smallest organic molecule and is a prime candidate for a thorough investigation regarding the anharmonic approximations made in computationally modeling its infrared spectrum. Mass-selected ion spectroscopy was used to detect mass 30 cations which include of HCOH^+ and CH_2O^+. In order to elucidate the differences between the structures of these isomers, infrared spectroscopy was performed on the mass 30 cations using Ar predissociation. Interestingly, several additional spectral features are observed that cannot be explained by the fundamental OH and CH stretch vibrations alone. By including anharmonic coupling between OH and CH stretching and various overtones and combination bands involving lower frequency vibrations, we are able to identify how specific modes couple and lead to the experimentally observed spectral features. We combine straight-forward, ab initio calculations of the anharmonic frequencies of the mass 30 cations with higher order, adiabatic approximations and Fermi resonance models. By including anharmonic effects we are able to confirm that the isomers of the CH_2O^+\\cdotAr system have substantially different, and thus distinguishable, IR spectra and that many of the features can only be explained with anharmonic treatments.

Helical quantum states in HgTe quantum dots with inverted band structures.

PubMed

Chang, Kai; Lou, Wen-Kai

2011-05-20

We investigate theoretically the electron states in HgTe quantum dots (QDs) with inverted band structures. In sharp contrast to conventional semiconductor quantum dots, the quantum states in the gap of the HgTe QD are fully spin-polarized and show ringlike density distributions near the boundary of the QD and spin-angular momentum locking. The persistent charge currents and magnetic moments, i.e., the Aharonov-Bohm effect, can be observed in such a QD structure. This feature offers us a practical way to detect these exotic ringlike edge states by using the SQUID technique.

Identifying Structural Flow Defects in Disordered Solids Using Machine-Learning Methods

NASA Astrophysics Data System (ADS)

Cubuk, E. D.; Schoenholz, S. S.; Rieser, J. M.; Malone, B. D.; Rottler, J.; Durian, D. J.; Kaxiras, E.; Liu, A. J.

2015-03-01

We use machine-learning methods on local structure to identify flow defects—or particles susceptible to rearrangement—in jammed and glassy systems. We apply this method successfully to two very different systems: a two-dimensional experimental realization of a granular pillar under compression and a Lennard-Jones glass in both two and three dimensions above and below its glass transition temperature. We also identify characteristics of flow defects that differentiate them from the rest of the sample. Our results show it is possible to discern subtle structural features responsible for heterogeneous dynamics observed across a broad range of disordered materials.

General Relativistic Radiative Transfer and General Relativistic MHD Simulations of Accretion and Outflows of Black Holes

NASA Technical Reports Server (NTRS)

Fuerst, Steven V.; Mizuno, Yosuke; Nishikawa, Ken-Ichi; Wu, Kinwah

2007-01-01

We have calculated the emission from relativistic flows in black hole systems using a fully general relativistic radiative transfer, with flow structures obtained by general relativistic magnetohydrodynamic simulations. We consider thermal free-free emission and thermal synchrotron emission. Bright filament-like features are found protruding (visually) from the accretion disk surface, which are enhancements of synchrotron emission when the magnetic field is roughly aligned with the line-of-sight in the co-moving frame. The features move back and forth as the accretion flow evolves, but their visibility and morphology are robust. We propose that variations and location drifts of the features are responsible for certain X-ray quasi-periodic oscillations (QPOs) observed in black-hole X-ray binaries.

Constraints on the lithospheric structure of Venus from mechanical models and tectonic surface features

NASA Technical Reports Server (NTRS)

Zuber, Maria T.

1987-01-01

The evidence for the extensional or compressional origins of some prominent Venusian surface features disclosed by radar images is discussed. Using simple models, the hypothesis that the observed length scales (10-20 km and 100-300 km) of deformations are controlled by dominant wavelengths arising from unstable compression or extension of the Venus lithosphere is tested. The results show that the existence of tectonic features that exhibit both length scales can be explained if, at the time of deformation, the lithosphere consisted of a crust that was relatively strong near the surface and weak at its base, and an upper mantle that was stronger than or nearly comparable in strength to the upper crust.

Upper-mantle origin of the Yellowstone hotspot

USGS Publications Warehouse

Christiansen, R.L.; Foulger, G.R.; Evans, J.R.

2002-01-01

Fundamental features of the geology and tectonic setting of the northeast-propagating Yellowstone hotspot are not explained by a simple deep-mantle plume hypothesis and, within that framework, must be attributed to coincidence or be explained by auxiliary hypotheses. These features include the persistence of basaltic magmatism along the hotspot track, the origin of the hotspot during a regional middle Miocene tectonic reorganization, a similar and coeval zone of northwestward magmatic propagation, the occurrence of both zones of magmatic propagation along a first-order tectonic boundary, and control of the hotspot track by preexisting structures. Seismic imaging provides no evidence for, and several contraindications of, a vertically extensive plume-like structure beneath Yellowstone or a broad trailing plume head beneath the eastern Snake River Plain. The high helium isotope ratios observed at Yellowstone and other hotspots are commonly assumed to arise from the lower mantle, but upper-mantle processes can explain the observations. The available evidence thus renders an upper-mantle origin for the Yellowstone system the preferred model; there is no evidence that the system extends deeper than ???200 km, and some evidence that it does not. A model whereby the Yellowstone system reflects feedback between upper-mantle convection and regional lithospheric tectonics is able to explain the observations better than a deep-mantle plume hypothesis.

Study of Outflow and Molecular Lines from the Observations of BHR71 by The Herschel Key Program,``Dust, Ice, and Gas In Time" (DIGIT)

NASA Astrophysics Data System (ADS)

Yang, Yao-Lun; Green, Joel D.

2014-07-01

The infall and outflow processes initiated by the collapse a dense core are widely observed in Class 0 protostars, and significantly change the density and temperature structure of the prestellar core as well as the following disk and envelope evolution. Since the Class 0 protostars are usually embedded in the cold molecular envelope preventing them from being observed at visible or near-IR wavelengths, the spectral analyses of the far-IR spectra provide us a window to look through the envelope and constrain the physical properties of the envelope and the core. BHR71, a Class 0 embedded protostar, is located in an isolated neighborhood with a collimated bipolar outflow and shows a rich far-IR spectrum as observed in the DIGIT program (PI: Neal Evans) with Herschel. It has numerous molecular and atomic features that can constrain its physical properties and the density structure well. In this research, we developed a robust data reduction (Green et al. 2013a, b) and automatic line fitting package that ensures all of the molecular and atomic lines are extracted to the same standard and it can be easily used for any other protostars observed by Herschel as well. We found 44 and 28 emission lines in the central spaxel in the PACS and the SPIRE bands respectively, including CO, 13CO, OH, and H2O. The extended feature observed at low-J CO and several H2O lines are consistent to the outflow direction but less collimated and a heterogeneous environment is concluded from the rotational diagram analysis. A dust Monte Carlo radiative transfer simulation using RADMC-3D will reveal the embedded structure with a dust density profile of a flared disk and a spherical envelope with bipolar outflow cavity. We will use a line radiative transfer simulation for multiple species to constrain the chemical abundance distributions and their temperature profiles.With high sensitivity spatial resolved spectra and simulated internal structure analysis of BHR71 will provide a good test of theoretical models of the infall and outflow.

Complex inner core of the Earth: The last frontier of global seismology

NASA Astrophysics Data System (ADS)

Tkalčić, Hrvoje

2015-03-01

The days when the Earth's inner core (IC) was viewed as a homogeneous solid sphere surrounded by the liquid outer core (OC) are now behind us. Due to a limited number of data sampling the IC and a lack of experimentally controlled conditions in the deep Earth studies, it has been difficult to scrutinize competitive hypotheses in this active area of research. However, a number of new concepts linking IC structure and dynamics has been proposed lately to explain different types of seismological observations. A common denominator of recent observational work on the IC is increased complexity seen in IC physical properties such as its isotropic and anisotropic structure, attenuation, inner core boundary (ICB) topography, and its rotational dynamics. For example, small-scale features have been observed to exist as a widespread phenomenon in the uppermost inner core, probably superimposed on much longer-scale features. The characterization of small-scale features sheds light on the nature of the solidification process and helps in understanding seismologically observed hemispherical dichotomy of the IC. The existence of variations in the rate and level of solidification is a plausible physical outcome in an environment where vigorous compositional convection in the OC and variations in heat exchange across the ICB may control the process of crystal growth. However, further progress is hindered by the fact that the current traveltime data of PKIKP waves traversing the IC do not allow discriminating between variations in isotropic P wave velocity and velocity anisotropy. Future studies of attenuation in the IC might provide crucial information about IC structure, although another trade-off exists—that of the relative contribution of scattering versus viscoelastic attenuation and the connection with the material properties. Future installations of dense arrays, cross paths of waves that sample the IC, and corresponding array studies will be a powerful tool to image and clearly distinguish between viscoelastic and scattering attenuation, and isotropic- and anisotropic-heterogeneity related effects on traveltimes of core-sensitive body waves. This will then inevitably contribute to a better understanding of what the IC is made of, how it solidifies and how it contributes to the generation and dynamics of the geomagnetic field.

Numerical simulation of colloidal self-assembly of super-hydrophobic arachnid cerotegument structures.

PubMed

Filippov, Alexander É; Wolff, Jonas O; Seiter, Michael; Gorb, Stanislav N

2017-10-07

Certain arachnids exhibit complex coatings of their exoskeleton, consisting of globular structures with complex surface features. This, so-called, cerotegument is formed by a multi-component colloidal secretion that self-assembles and cures on the body surface, and leads to high water repellency. Previous ultrastructural studies revealed the involvement of different glandular cells that contribute different components to the secretion mixture, but the overall process of self-assembly into the complex regular structures observed remained highly unclear. Here we study this process from a theoretical point of view, starting from the so-called Tammes-problem. We show that slight changes of simple parameters lead to a variety of morphologies that are highly similar to the ones observed in the species specific cerotegument structures of whip-spiders. These results are not only important for our understanding of the formation of globular hierarchical structures in nature, but also for the fabrication of novel surface coatings by colloidal lithography. Copyright © 2017 Elsevier Ltd. All rights reserved.

Age structure is critical to the population dynamics and survival of honeybee colonies

PubMed Central

Betti, M. I.; Wahl, L. M.

2016-01-01

Age structure is an important feature of the division of labour within honeybee colonies, but its effects on colony dynamics have rarely been explored. We present a model of a honeybee colony that incorporates this key feature, and use this model to explore the effects of both winter and disease on the fate of the colony. The model offers a novel explanation for the frequently observed phenomenon of ‘spring dwindle’, which emerges as a natural consequence of the age-structured dynamics. Furthermore, the results indicate that a model taking age structure into account markedly affects the predicted timing and severity of disease within a bee colony. The timing of the onset of disease with respect to the changing seasons may also have a substantial impact on the fate of a honeybee colony. Finally, simulations predict that an infection may persist in a honeybee colony over several years, with effects that compound over time. Thus, the ultimate collapse of the colony may be the result of events several years past. PMID:28018627

Structural features of phosphate accumulations in the Gantour basin - Morocco : Application of GIS

NASA Astrophysics Data System (ADS)

Mohamed, Laadraoui; El Hassane, Boumaggard; Essaid, Jourani

2010-05-01

The Moroccan Atlantic margin raises a lot of interest because of its potential resources in phosphates. It also holds in its Mesetien part one of the largest phosphatic deposit in the world. The authors present the results of their researches on structural environments of the phosphatic sedimentary sequences in the Gantour deposit in western Morocco. These investigations are mainly based on field data, data recorded from work done by the OCP (Office Chérifien des Phosphates) group, the interpretation of industrial seismic profiles and the application of GIS. Our aim are devoted to the apprehension of the geometry and the cinematic of these basins which are contemporaneous to the Central Atlantic Rifting, as well as the determination of the list of factors liable to the genesis of these phosphatic basins. Other data of field observations (cartography, study of structural features,...) permit to identify the general structure of the prospect. Sedimentation of phosphated deposits is strained by the presence of two wrench faulting systems oriented N20¬40E, N80¬120E and N140¬160E.

Optimum design for effective water transport through a double-layered porous hydrogel inspired by plant leaves

NASA Astrophysics Data System (ADS)

Kim, Hyejeong; Kim, Hyeonjeong; Huh, Hyungkyu; Hwang, Hyung Ju; Lee, Sang Joon

2014-11-01

Plant leaves are generally known to have optimized morphological structure in response to environmental changes for efficient water usage. However, the advantageous features of plant leaves are not fully utilized in engineering fields yet, since the optimum design in internal structure of plant leaves is unclear. In this study, the tissue organization of the hydraulic pathways inside plant leaves was investigated. Water transport through double-layered porous hydrogel models analogous to mesophyll cells was experimentally observed. In addition, computational experiment and theoretical analysis were applied to the model systems to find the optimal design for efficient water transport. As a result, the models with lower porosity or with pores distributed widely in the structure exhibit efficient mass transport. Our theoretical prediction supports that structural features of plant leaves guarantee sufficient water supply as survival strategy. This study may provide a new framework for investigating the biophysical principles governing the morphological optimization of plant leaves and for designing microfluidic devices to enhance mass transport ability. This study was supported by the National Research Foundation of Korea and funded by the Korean government.

Presumed magnetic biosignatures observed in magnetite derived from abiotic reductive alteration of nanogoethite

NASA Astrophysics Data System (ADS)

Till, Jessica L.; Guyodo, Yohan; Lagroix, France; Morin, Guillaume; Menguy, Nicolas; Ona-Nguema, Georges

2017-03-01

The oriented chains of nanoscale Fe-oxide particles produced by magnetotactic bacteria are a striking example of biomineralization. Several distinguishing features of magnetite particles that comprise bacterial magnetosomes have been proposed to collectively constitute a biosignature of magnetotactic bacteria (Thomas-Keprta et al., 2001). These features include high crystallinity, chemical purity, a single-domain magnetic structure, well-defined crystal morphology, and arrangement of particles in chain structures. Here, we show that magnetite derived from the inorganic breakdown of nanocrystalline goethite exhibits magnetic properties and morphologies remarkably similar to those of biogenic magnetite from magnetosomes. During heating in reducing conditions, oriented nanogoethite aggregates undergo dehydroxylation and transform into stoichiometric magnetite. We demonstrate that highly crystalline single-domain magnetite with euhedral grain morphologies produced abiogenically from goethite meets several of the biogenicity criteria commonly used for the identification of magnetofossils. Furthermore, the suboxic conditions necessary for magnetofossil preservation in sediments are conducive to the reductive alteration of nanogoethite, as well as the preservation of detrital magnetite originally formed from goethite. The findings of this study have potential implications for the identification of biogenic magnetite, particularly in older sediments where diagenesis commonly disrupts the chain structure of magnetosomes. Our results indicate that isolated magnetofossils cannot be positively distinguished from inorganic magnetite on the basis of their magnetic properties and morphology, and that intact chain structures remain the only reliable distinguishing feature of fossil magnetosomes.

Photogeological analysis of Europan tectonic features

NASA Technical Reports Server (NTRS)

Tufts, B. R.

1993-01-01

Preliminary photogeological analyses of the Pelorus Linea and Sidon Flexus regions of Europa were conducted to explore the proposal by Schenk that lateral motion of crustal blocks has occurred in a 'rift zone' including possible strike-slip, tension fracturing, and geometric plate rotation about an Euler pole. These analyses revealed features interpreted as tensional structures and block rotation in a strike-slip regime consistent with the Schenk hypotheses and implied the presence of at least two stages of crustal deformation consistent with a chronology developed by Lucchitta. Confirmation of regional scale Euler pole rotation was ambiguous, however. Up to 80 kilometers of possible extension was identified in the rift zone; to accommodate this, 'cryosubduction' is speculatively proposed as a mechanism for recycling Europan 'ice lithosphere'. The cumulative width of wedge-shaped bands included in the rift zone was measured and plotted versus distance from the inferred rotation pole. Three sharp decreases in the total width were noted. These occur roughly where certain triple bands cross the rift zone suggesting that the bands are structural features that predate and influence the zone. While the curve hints at one or more sinusoidal relationships consistent with rotation geometry, given the low photographic resolution and the preliminary nature of this examination the question of whether the observations represent coherent regional rotation modified by crosscutting structures or instead imply independent local rotations separated by these structures is unanswered by this analysis.

Helium induced fine structure in the electronic spectra of anthracene derivatives doped into superfluid helium nanodroplets

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pentlehner, D.; Slenczka, A., E-mail: alkwin.slenczka@chemie.uni-regensburg.de

2015-01-07

Electronic spectra of organic molecules doped into superfluid helium nanodroplets show characteristic features induced by the helium environment. Besides a solvent induced shift of the electronic transition frequency, in many cases, a spectral fine structure can be resolved for electronic and vibronic transitions which goes beyond the expected feature of a zero phonon line accompanied by a phonon wing as known from matrix isolation spectroscopy. The spectral shape of the zero phonon line and the helium induced phonon wing depends strongly on the dopant species. Phonon wings, for example, are reported ranging from single or multiple sharp transitions to broadmore » (Δν > 100 cm{sup −1}) diffuse signals. Despite the large number of example spectra in the literature, a quantitative understanding of the helium induced fine structure of the zero phonon line and the phonon wing is missing. Our approach is a systematic investigation of related molecular compounds, which may help to shed light on this key feature of microsolvation in superfluid helium droplets. This paper is part of a comparative study of the helium induced fine structure observed in electronic spectra of anthracene derivatives with particular emphasis on a spectrally sharp multiplet splitting at the electronic origin. In addition to previously discussed species, 9-cyanoanthracene and 9-chloroanthracene will be presented in this study for the first time.« less

A Comparative Study on Selective PPAR Modulators through Quantitative Structure-activity Relationship, Pharmacophore and Docking Analyses.

PubMed

Nandy, Ashis; Roy, Kunal; Saha, Achintya

2018-01-01

Metabolic syndrome is a matrix of different metabolic disorders which are the leading cause of death in human beings. Peroxysome proliferated activated receptor (PPAR) is a nuclear receptor involved in metabolism of fats and glucose. In order to explore structural requirements for selective PPAR modulators to control lipid and carbohydrate metabolism, the multi-cheminformatics studies have been performed. In silico modeling studies have been performed on a diverse set of PPAR modulators through quantitative structure-activity relationship (QSAR), pharmacophore mapping and docking studies. It is observed that the presence of an amide fragment (-CONHRPh) has a detrimental effect while an aliphatic ether linkage has a beneficial effect on PPARα modulation. On the other hand, the presence of an amide fragment has a positive effect on PPARδ modulation, but the aliphatic ether linkage and substituted aromatic ring in the molecular scaffold are very much essential for imparting potent and selective PPARγ modulation. Negative ionizable features (i.e. polar fragments) must be present in PPARδ and α modulators, but a hydrophobic feature is the prime requirement for PPARγ modulation. Here, the essential structural features have been explored for selective modulation of each subtype of PPAR in order to design new modulators with improved activity/selectivity. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

Reconciling Long-Wavelength Dynamic Topography, Geoid Anomalies and Mass Distribution on Earth

NASA Astrophysics Data System (ADS)

Hoggard, M.; Richards, F. D.; Ghelichkhan, S.; Austermann, J.; White, N.

2017-12-01

Since the first satellite observations in the late 1950s, we have known that that the Earth's non-hydrostatic geoid is dominated by spherical harmonic degree 2 (wavelengths of 16,000 km). Peak amplitudes are approximately ± 100 m, with highs centred on the Pacific Ocean and Africa, encircled by lows in the vicinity of the Pacific Ring of Fire and at the poles. Initial seismic tomography models revealed that the shear-wave velocity, and therefore presumably the density structure, of the lower mantle is also dominated by degree 2. Anti-correlation of slow, probably low density regions beneath geoid highs indicates that the mantle is affected by large-scale flow. Thus, buoyant features are rising and exert viscous normal stresses that act to deflect the surface and core-mantle boundary (CMB). Pioneering studies in the 1980s showed that a viscosity jump between the upper and lower mantle is required to reconcile these geoid and tomographically inferred density anomalies. These studies also predict 1-2 km of dynamic topography at the surface, dominated by degree 2. In contrast to this prediction, a global observational database of oceanic residual depth measurements indicates that degree 2 dynamic topography has peak amplitudes of only 500 m. Here, we attempt to reconcile observations of dynamic topography, geoid, gravity anomalies and CMB topography using instantaneous flow kernels. We exploit a density structure constructed from blended seismic tomography models, combining deep mantle imaging with higher resolution upper mantle features. Radial viscosity structure is discretised, and we invert for the best-fitting viscosity profile using a conjugate gradient search algorithm, subject to damping. Our results suggest that, due to strong sensitivity to radial viscosity structure, the Earth's geoid seems to be compatible with only ± 500 m of degree 2 dynamic topography.

Reflection features in the Galactic Center and past activity of Sagittarius A*

NASA Astrophysics Data System (ADS)

Clavel, Maïca; Terrier, Regis; Goldwurm, Andrea; Morris, Mark; Jin, Chichuan; Ponti, Gabriele; Chuard, Dimitri

2016-07-01

X-ray observations carried out over the past two decades have captured an increasing number of reflection features within the molecular clouds located in the inner regions of our Galaxy. The intensity of these structures along with the correlated variations which are detected over the entire central molecular zone are strong evidence that this diffuse emission is created by the past activity of the supermassive black hole at the Galactic center, Sagittarius A*. In particular, within the last centuries, Sgr A* is likely to have experienced several short outbursts during which the black hole was at least a million times brighter than today. However, the precise description of the corresponding past catastrophic events is difficult to assess, mainly because the properties of the reflection features that they create while propagating away from Sgr A* depend on the line-of-sight distance, the geometry, and the size of the reflecting clouds, all of which are poorly known. I will review the different attempts to reconstruct Sgr A*'s past activity from the constraints obtained through the observation of the reflection features in the Galactic center, including the current Chandra monitoring.

Femtosecond laser structuring of silver-containing glass: Silver redistribution, selective etching, and surface topology engineering

DOE Office of Scientific and Technical Information (OSTI.GOV)

Desmoulin, Jean-Charles; Petit, Yannick; Cardinal, Thierry, E-mail: thierry.cardinal@icmcb.cnrs.fr

2015-12-07

Femtosecond direct laser writing in silver-containing phosphate glasses allows for the three-dimensional (3D) implementation of complex photonic structures. Sample translation along or perpendicular to the direction of the beam propagation has been performed, which led to the permanent formation of fluorescent structures, either corresponding to a tubular shape or to two parallel planes at the vicinity of the interaction voxel, respectively. These optical features are related to significant modifications of the local material chemistry. Indeed, silver depletion areas with a diameter below 200 nm were evidenced at the center of the photo-produced structures while photo-produced luminescence properties are attributed to themore » formation of silver clusters around the multiphoton interaction voxel. The laser-triggered oxidation-reduction processes and the associated photo-induced silver redistribution are proposed to be at the origin of the observed original 3D luminescent structures. Thanks to such material structuring, surface engineering has been also demonstrated. Selective surface chemical etching of the glass has been obtained subsequently to laser writing at the location of the photo-produced structures, revealing features with nanometric depth profiles and radial dimensions strongly related to the spatial distributions of the silver clusters.« less

Structural studies on choline-carboxylate bio-ionic liquids by x-ray scattering and molecular dynamics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tanzi, Luana; Ramondo, Fabio, E-mail: fabio.ramondo@univaq.it; Caminiti, Ruggero

2015-09-21

We report a X-ray diffraction and molecular dynamics study on three choline-based bio-ionic liquids, choline formate, [Ch] [For], choline propanoate, [Ch][Pro], and choline butanoate, [Ch][But]. For the first time, this class of ionic liquids has been investigated by X-ray diffraction. Experimental and theoretical structure factors have been compared for each term of the series. Local structural organization has been obtained from ab initio calculations through static models of isolated ion pairs and dynamic simulations of small portions of liquids through twelve, ten, and nine ion pairs for [Ch][For], [Ch][Pro], and [Ch][But], respectively. All the theoretical models indicate that cations andmore » anions are connected by strong hydrogen bonding and form stable ion pairs in the liquid that are reminiscent of the static ab initio ion pairs. Different structural aspects may affect the radial distribution function, like the local structure of ion pairs and the conformation of choline. When small portions of liquids have been simulated by dynamic quantum chemical methods, some key structural features of the X-ray radial distribution function were well reproduced whereas the classical force fields here applied did not entirely reproduce all the observed structural features.« less

Soft-lithography fabrication of microfluidic features using thiol-ene formulations.

PubMed

Ashley, John F; Cramer, Neil B; Davis, Robert H; Bowman, Christopher N

2011-08-21

In this work, a novel thiol-ene based photopolymerizable resin formulation was shown to exhibit highly desirable characteristics, such as low cure time and the ability to overcome oxygen inhibition, for the photolithographic fabrication of microfluidic devices. The feature fidelity, as well as various aspects of the feature shape and quality, were assessed as functions of various resin attributes, particularly the exposure conditions, initiator concentration and inhibitor to initiator ratio. An optical technique was utilized to evaluate the feature fidelity as well as the feature shape and quality. These results were used to optimize the thiol-ene resin formulation to produce high fidelity, high aspect ratio features without significant reductions in feature quality. For structures with aspect ratios below 2, little difference (<3%) in feature quality was observed between thiol-ene and acrylate based formulations. However, at higher aspect ratios, the thiol-ene resin exhibited significantly improved feature quality. At an aspect ratio of 8, raised feature quality for the thiol-ene resin was dramatically better than that achieved by using the acrylate resin. The use of the thiol-ene based resin enabled fabrication of a pinched-flow microfluidic device that has complex channel geometry, small (50 μm) channel dimensions, and high aspect ratio (14) features. This journal is © The Royal Society of Chemistry 2011

Event-related potentials to structural familiar face incongruity processing.

PubMed

Jemel, B; George, N; Olivares, E; Fiori, N; Renault, B

1999-07-01

Thirty scalp sites were used to investigate the specific topography of the event-related potentials (ERPs) related to face associative priming when masked eyes of familiar faces were completed with either the proper features or incongruent ones. The enhanced negativity of N210 and N350, due to structural incongruity of faces, have a "category specific" inferotemporal localization on the scalp. Additional analyses support the existence of multiple ERP features within the temporal interval typically associated with N400 (N350 and N380), involving occipitotemporal and centroparietal areas. Seven reliable dipole locations have been evidenced using the brain electrical source analysis algorithm. Some of these localizations (fusiform, parahippocampal) are already known to be involved in face recognition, the other ones being related to general cognitive processes related to the task's demand. Because of their specific topography, the observed effects suggest that the face structural congruency process might involve early specialized neocortical areas in parallel with cortical memory circuits in the integration of perceptual and cognitive face processing.

A Novel Characterization of Amalgamated Networks in Natural Systems

PubMed Central

Barranca, Victor J.; Zhou, Douglas; Cai, David

2015-01-01

Densely-connected networks are prominent among natural systems, exhibiting structural characteristics often optimized for biological function. To reveal such features in highly-connected networks, we introduce a new network characterization determined by a decomposition of network-connectivity into low-rank and sparse components. Based on these components, we discover a new class of networks we define as amalgamated networks, which exhibit large functional groups and dense connectivity. Analyzing recent experimental findings on cerebral cortex, food-web, and gene regulatory networks, we establish the unique importance of amalgamated networks in fostering biologically advantageous properties, including rapid communication among nodes, structural stability under attacks, and separation of network activity into distinct functional modules. We further observe that our network characterization is scalable with network size and connectivity, thereby identifying robust features significant to diverse physical systems, which are typically undetectable by conventional characterizations of connectivity. We expect that studying the amalgamation properties of biological networks may offer new insights into understanding their structure-function relationships. PMID:26035066

Aesthetics-based classification of geological structures in outcrops for geotourism purposes: a tentative proposal

NASA Astrophysics Data System (ADS)

Mikhailenko, Anna V.; Nazarenko, Olesya V.; Ruban, Dmitry A.; Zayats, Pavel P.

2017-03-01

The current growth in geotourism requires an urgent development of classifications of geological features on the basis of criteria that are relevant to tourist perceptions. It appears that structure-related patterns are especially attractive for geotourists. Consideration of the main criteria by which tourists judge beauty and observations made in the geodiversity hotspot of the Western Caucasus allow us to propose a tentative aesthetics-based classification of geological structures in outcrops, with two classes and four subclasses. It is possible to distinguish between regular and quasi-regular patterns (i.e., striped and lined and contorted patterns) and irregular and complex patterns (paysage and sculptured patterns). Typical examples of each case are found both in the study area and on a global scale. The application of the proposed classification permits to emphasise features of interest to a broad range of tourists. Aesthetics-based (i.e., non-geological) classifications are necessary to take into account visions and attitudes of visitors.

Sequence, Structure, and Context Preferences of Human RNA Binding Proteins.

PubMed

Dominguez, Daniel; Freese, Peter; Alexis, Maria S; Su, Amanda; Hochman, Myles; Palden, Tsultrim; Bazile, Cassandra; Lambert, Nicole J; Van Nostrand, Eric L; Pratt, Gabriel A; Yeo, Gene W; Graveley, Brenton R; Burge, Christopher B

2018-06-07

RNA binding proteins (RBPs) orchestrate the production, processing, and function of mRNAs. Here, we present the affinity landscapes of 78 human RBPs using an unbiased assay that determines the sequence, structure, and context preferences of these proteins in vitro by deep sequencing of bound RNAs. These data enable construction of "RNA maps" of RBP activity without requiring crosslinking-based assays. We found an unexpectedly low diversity of RNA motifs, implying frequent convergence of binding specificity toward a relatively small set of RNA motifs, many with low compositional complexity. Offsetting this trend, however, we observed extensive preferences for contextual features distinct from short linear RNA motifs, including spaced "bipartite" motifs, biased flanking nucleotide composition, and bias away from or toward RNA structure. Our results emphasize the importance of contextual features in RNA recognition, which likely enable targeting of distinct subsets of transcripts by different RBPs that recognize the same linear motif. Copyright © 2018 The Authors. Published by Elsevier Inc. All rights reserved.

Evolution of the arginase fold and functional diversity

PubMed Central

Dowling, Daniel P.; Costanzo, Luigi Di; Gennadios, Heather A.; Christianson, David W.

2009-01-01

The large number of protein structures deposited in the Protein Data Bank allows for the identification of novel structural superfamilies based on conservation of fold in addition to conservation of amino acid sequence. Since sequence diverges more rapidly than fold in protein evolution, proteins with little or no significant sequence identity are occasionally observed to adopt similar folds, thereby reflecting unanticipated evolutionary relationships. Here, we review the unique α/β fold first observed in the manganese metalloenzyme rat liver arginase, consisting of a parallel 8 stranded β-sheet surrounded by several helices, and its evolutionary relationship with the zinc-requiring and/or iron-requiring histone deacetylases and acetylpolyamine amidohydrolases. Structural comparisons reveal key features of the core α/β fold that contribute to the divergent metal ion specificity and stoichiometry required for the chemical and biological functions of these enzymes. PMID:18360740

Kinetic-freezing and unfreezing of local-region fluctuations in a glass structure observed by heat capacity hysteresis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Aji, D. P. B.; Johari, G. P., E-mail: joharig@mcmaster.ca

Fluctuations confined to local regions in the structure of a glass are observed as the Johari-Goldstein (JG) relaxation. Properties of these regions and their atomic configuration are currently studied by relaxation techniques, by electron microscopy, and by high-energy X-ray scattering and extended x-ray absorption fine structure methods. One expects that these fluctuations (i) would kinetically freeze on cooling a glass, and the temperature coefficient of its enthalpy, dH/dT, would consequently show a gradual decrease with decrease in T, (ii) would kinetically unfreeze on heating the glass toward the glass-liquid transition temperature, T{sub g}, and dH/dT would gradually increase, and (iii)more » there would be a thermal hysteresis indicating the time and temperature dependence of the enthalpy. Since no such features have been found, thermodynamic consequences of these fluctuations are debated. After searching for these features in glasses of different types, we found it in one of the most stable metal alloy glasses of composition Pd{sub 40}Ni{sub 10}Cu{sub 30}P{sub 20}. On cooling from its T{sub g}, dH/dT decreased along a broad sigmoid-shape path as local-region fluctuations kinetically froze. On heating thereafter, dH/dT increased along a similar path as these fluctuations unfroze, and there is hysteresis in the cooling and heating paths, similar to that observed in the T{sub g}-endotherm range. After eliminating other interpretations, we conclude that local-region fluctuations seen as the JG relaxation in the non-equilibrium state of a glass contribute to its entropy, and we suggest conditions under which such fluctuations may be observed.« less

Kinetic-freezing and unfreezing of local-region fluctuations in a glass structure observed by heat capacity hysteresis.

PubMed

Aji, D P B; Johari, G P

2015-06-07

Fluctuations confined to local regions in the structure of a glass are observed as the Johari-Goldstein (JG) relaxation. Properties of these regions and their atomic configuration are currently studied by relaxation techniques, by electron microscopy, and by high-energy X-ray scattering and extended x-ray absorption fine structure methods. One expects that these fluctuations (i) would kinetically freeze on cooling a glass, and the temperature coefficient of its enthalpy, dH/dT, would consequently show a gradual decrease with decrease in T, (ii) would kinetically unfreeze on heating the glass toward the glass-liquid transition temperature, Tg, and dH/dT would gradually increase, and (iii) there would be a thermal hysteresis indicating the time and temperature dependence of the enthalpy. Since no such features have been found, thermodynamic consequences of these fluctuations are debated. After searching for these features in glasses of different types, we found it in one of the most stable metal alloy glasses of composition Pd40Ni10Cu30P20. On cooling from its Tg, dH/dT decreased along a broad sigmoid-shape path as local-region fluctuations kinetically froze. On heating thereafter, dH/dT increased along a similar path as these fluctuations unfroze, and there is hysteresis in the cooling and heating paths, similar to that observed in the Tg-endotherm range. After eliminating other interpretations, we conclude that local-region fluctuations seen as the JG relaxation in the non-equilibrium state of a glass contribute to its entropy, and we suggest conditions under which such fluctuations may be observed.

Ion nose spectral structures observed by the Van Allen Probes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ferradas, C. P.; Zhang, J. -C.; Spence, H. E.

Here, we present a statistical study of nose-like structures observed in energetic hydrogen, helium, and oxygen ions near the inner edge of the plasma sheet. Nose structures are spectral features named after the characteristic shapes of energy bands or gaps in the energy-time spectrograms of in situ measured ion fluxes. Using 22 months of observations from the Helium Oxygen Proton Electron (HOPE) instrument onboard Van Allen Probe A, we determine the number of noses observed, and the minimum L-shell reached and energy of each nose on each pass through the inner magnetosphere. We find that multiple noses occur more frequentlymore » in heavy ions than in H +, and are most often observed during quiet times. The heavy-ion noses penetrate to lower L shells than H + noses and there is an energy-magnetic local time (MLT) dependence in the nose locations and energies that is similar for all species. The observations are interpreted using a steady-state model of ion drift in the inner magnetosphere. The model is able to explain the energy and MLT dependence of the different types of nose structures. Different ion charge exchange lifetimes are the main cause for the deeper penetration of heavy-ion noses. The species dependence and preferred geomagnetic conditions of multiple-nose events indicate that they must be on long drift paths, leading to strong charge-exchange effects. The results provide important insight into the spatial distribution, species dependence, and geomagnetic conditions under which nose structures occur.« less

Ion nose spectral structures observed by the Van Allen Probes

DOE PAGES

Ferradas, C. P.; Zhang, J. -C.; Spence, H. E.; ...

2016-11-22

Here, we present a statistical study of nose-like structures observed in energetic hydrogen, helium, and oxygen ions near the inner edge of the plasma sheet. Nose structures are spectral features named after the characteristic shapes of energy bands or gaps in the energy-time spectrograms of in situ measured ion fluxes. Using 22 months of observations from the Helium Oxygen Proton Electron (HOPE) instrument onboard Van Allen Probe A, we determine the number of noses observed, and the minimum L-shell reached and energy of each nose on each pass through the inner magnetosphere. We find that multiple noses occur more frequentlymore » in heavy ions than in H +, and are most often observed during quiet times. The heavy-ion noses penetrate to lower L shells than H + noses and there is an energy-magnetic local time (MLT) dependence in the nose locations and energies that is similar for all species. The observations are interpreted using a steady-state model of ion drift in the inner magnetosphere. The model is able to explain the energy and MLT dependence of the different types of nose structures. Different ion charge exchange lifetimes are the main cause for the deeper penetration of heavy-ion noses. The species dependence and preferred geomagnetic conditions of multiple-nose events indicate that they must be on long drift paths, leading to strong charge-exchange effects. The results provide important insight into the spatial distribution, species dependence, and geomagnetic conditions under which nose structures occur.« less

Ion nose spectral structures observed by the Van Allen Probes

NASA Astrophysics Data System (ADS)

Ferradas, C. P.; Zhang, J.-C.; Spence, H. E.; Kistler, L. M.; Larsen, B. A.; Reeves, G.; Skoug, R.; Funsten, H.

2016-12-01

We present a statistical study of nose-like structures observed in energetic hydrogen, helium, and oxygen ions near the inner edge of the plasma sheet. Nose structures are spectral features named after the characteristic shapes of energy bands or gaps in the energy-time spectrograms of in situ measured ion fluxes. Using 22 months of observations from the Helium Oxygen Proton Electron instrument onboard Van Allen Probe A, we determine the number of noses observed, and the minimum L shell reached and energy of each nose on each pass through the inner magnetosphere. We find that multiple noses occur more frequently in heavy ions than in H+ and are most often observed during quiet times. The heavy-ion noses penetrate to lower L shells than H+ noses, and there is an energy-magnetic local time (MLT) dependence in the nose locations and energies that is similar for all species. The observations are interpreted by using a steady state model of ion drift in the inner magnetosphere. The model is able to explain the energy and MLT dependence of the different types of nose structures. Different ion charge-exchange lifetimes are the main cause for the deeper penetration of heavy-ion noses. The species dependence and preferred geomagnetic conditions of multiple-nose events indicate that they must be on long drift paths, leading to strong charge-exchange effects. The results provide important insight into the spatial distribution, species dependence, and geomagnetic conditions under which nose structures occur.

Chemical Dynamics of nano-Aluminum and Iodine Based Oxidizers

NASA Astrophysics Data System (ADS)

Little, Brian; Ridge, Claron; Overdeep, Kyle; Slizewski, Dylan; Lindsay, Michael

2017-06-01

As observed in previous studies of nanoenergetic powder composites, micro/nano-structural features such as particle morphology and/or reactant spatial distance are expected to strongly influence properties that govern the combustion behavior of energetic materials (EM). In this study, highly reactive composites containing crystalline iodine (V) oxide or iodate salts with nano-sized aluminum (nAl) were blended by two different processing techniques and then collected as a powder for characterization. Physiochemical techniques such as thermal gravimetric analysis, calorimetry, X-ray diffraction, electron microscopy, high speed photography, pressure profile analysis, temperature programmed reactions, and spectroscopy were employed to characterize these EM with emphasis on correlating the chemical reactivity with inherent structural features and variations in stoichiometry. This work is a continuation of efforts to probe the chemical dynamics of nAl-iodine based composites.

The velocity field of a coronal mass ejection - The event of September 1, 1980

NASA Technical Reports Server (NTRS)

Low, B. C.; Hundhausen, A. J.

1987-01-01

The velocity field of a mass ejection that was observed by the coronagraph of the SMM satellite over the northwest limb of the sun at about 0600 UT on September 1, 1980 is studied in detail. A descriptive account of the event is given, concentrating on qualitative features of the mass motion and suggesting a possible origin of the unusual two-loop structure. The velocity field is analyzed quantitatively, and the implications of the results for the mass ejection theory are considered. It is concluded that a self-similar description of the velocity field is a gross oversimplification and that although some evidence of wave propagation can be found, the bright features in the mass ejection are plasma structures moving with frozen-in magnetic fields, rather than waves propagating through plasmas and magnetic fields.

The structure and evolution of coronal holes

NASA Technical Reports Server (NTRS)

Timothy, A. F.; Krieger, A. S.; Vaiana, G. S.

1975-01-01

Soft X-ray observations of coronal holes are analyzed to determine the structure, temporal evolution, and rotational properties of those features as well as possible mechanisms which may account for their almost rigid rotational characteristics. It is shown that coronal holes are open features with a divergent magnetic-field configuration resulting from a particular large-scale magnetic-field topology. They are apparently formed when the successive emergence and dispersion of active-region fields produce a swath of unipolar field founded by fields of opposite polarity, and they die when large-scale field patterns emerge which significantly distort the original field configuration. Two types of holes are described (compact and elongated), and three possible rotation mechanisms are considered: a rigidly rotating subphotospheric phenomenon, a linking of high and low latitudes by closed field lines, and an interaction between moving coronal material and open field lines.

Nuclear Physics Around the Unitarity Limit

DOE PAGES

König, Sebastian; Grießhammer, Harald W.; Hammer, H. -W.; ...

2017-05-15

We argue that many features of the structure of nuclei emerge from a strictly perturbative expansion around the unitarity limit, where the two-nucleon S waves have bound states at zero energy. In this limit, the gross features of states in the nuclear chart are correlated to only one dimensionful parameter, which is related to the breaking of scale invariance to a discrete scaling symmetry and set by the triton binding energy. Observables are moved to their physical values by small perturbative corrections, much like in descriptions of the fine structure of atomic spectra. We provide evidence in favor of themore » conjecture that light, and possibly heavier, nuclei are bound weakly enough to be insensitive to the details of the interactions but strongly enough to be insensitive to the exact size of the two-nucleon system.« less

Structure of selected basic zinc/copper (II) phosphate minerals based upon near-infrared spectroscopy--implications for hydrogen bonding.

PubMed

Frost, Ray L; Reddy, B Jagannadha; Palmer, Sara J; Keeffe, Eloise C

2011-03-01

The NIR spectra of reichenbachite, scholzite and parascholzite have been studied at 298 K. The spectra of the minerals are different, in line with composition and crystal structural variations. Cation substitution effects are significant in their electronic spectra and three distinctly different electronic transition bands are observed in the near-infrared spectra at high wavenumbers in the 12,000-7600 cm(-1) spectral region. Reichenbachite electronic spectrum is characterised by Cu(II) transition bands at 9755 and 7520 cm(-1). A broad spectral feature observed for ferrous ion in the 12,000-9000 cm(-1) region both in scholzite and parascholzite. Some what similarities in the vibrational spectra of the three phosphate minerals are observed particularly in the OH stretching region. The observation of strong band at 5090 cm(-1) indicates strong hydrogen bonding in the structure of the dimorphs, scholzite and parascholzite. The three phosphates exhibit overlapping bands in the 4800-4000 cm(-1) region resulting from the combinations of vibrational modes of (PO(4))(3-) units. Copyright © 2010 Elsevier B.V. All rights reserved.

NSAID-derived γ-secretase modulation requires an acidic moiety on the carbazole scaffold.

PubMed

Zall, Andrea; Kieser, Daniel; Höttecke, Nicole; Naumann, Eva C; Thomaszewski, Binia; Schneider, Katrin; Steinbacher, Dirk T; Schubenel, Robert; Masur, Stefan; Baumann, Karlheinz; Schmidt, Boris

2011-08-15

Modulation of γ-secretase activity holds potential for the treatment of Alzheimer's disease. Most NSAID-derived γ-secretase modulators feature a carboxylic acid, which may impair blood-brain barrier permeation. The structure activity relationship of 33 carbazoles featuring diverse carboxylic acid isosteres or metabolic precursors thereof was established in a cellular amyloid secretion assay. The modulatory activity was observed for acidic moieties and metabolically labile esters only, which supports our hypothesis of an acid-lysine interaction to be relevant for this type of γ-secretase modulators. Copyright © 2011 Elsevier Ltd. All rights reserved.

Application of Image Analysis for Characterization of Spatial Arrangements of Features in Microstructure

NASA Technical Reports Server (NTRS)

Louis, Pascal; Gokhale, Arun M.

1995-01-01

A number of microstructural processes are sensitive to the spatial arrangements of features in microstructure. However, very little attention has been given in the past to the experimental measurements of the descriptors of microstructural distance distributions due to the lack of practically feasible methods. We present a digital image analysis procedure to estimate the micro-structural distance distributions. The application of the technique is demonstrated via estimation of K function, radial distribution function, and nearest-neighbor distribution function of hollow spherical carbon particulates in a polymer matrix composite, observed in a metallographic section.

In vivo multimodal nonlinear optical imaging of mucosal tissue

NASA Astrophysics Data System (ADS)

Sun, Ju; Shilagard, Tuya; Bell, Brent; Motamedi, Massoud; Vargas, Gracie

2004-05-01

We present a multimodal nonlinear imaging approach to elucidate microstructures and spectroscopic features of oral mucosa and submucosa in vivo. The hamster buccal pouch was imaged using 3-D high resolution multiphoton and second harmonic generation microscopy. The multimodal imaging approach enables colocalization and differentiation of prominent known spectroscopic and structural features such as keratin, epithelial cells, and submucosal collagen at various depths in tissue. Visualization of cellular morphology and epithelial thickness are in excellent agreement with histological observations. These results suggest that multimodal nonlinear optical microscopy can be an effective tool for studying the physiology and pathology of mucosal tissue.

Generalized epidemic process on modular networks.

PubMed

Chung, Kihong; Baek, Yongjoo; Kim, Daniel; Ha, Meesoon; Jeong, Hawoong

2014-05-01

Social reinforcement and modular structure are two salient features observed in the spreading of behavior through social contacts. In order to investigate the interplay between these two features, we study the generalized epidemic process on modular networks with equal-sized finite communities and adjustable modularity. Using the analytical approach originally applied to clique-based random networks, we show that the system exhibits a bond-percolation type continuous phase transition for weak social reinforcement, whereas a discontinuous phase transition occurs for sufficiently strong social reinforcement. Our findings are numerically verified using the finite-size scaling analysis and the crossings of the bimodality coefficient.

Small-scale features in the Earth's magnetic field observed by Magsat.

USGS Publications Warehouse

Cain, J.C.; Schmitz, D.R.; Muth, L.

1984-01-01

A spherical harmonic expansion to degree and order 29 is derived using a selected magnetically quiet sample of Magsat data. Global maps representing the contribution due to terms of the expansion above n = 13 at 400 km altitude are compared with previously published residual anomaly maps and shown to be similar, even in polar regions. An expansion with such a high degree and order displays all but the sharpest features seen by the satellite and gives a more consistent picture of the high-order field structure at a constant altitude than do component maps derived independently. -Authors

Explaining TeV cosmic-ray anisotropies with non-diffusive cosmic-ray propagation

DOE PAGES

Harding, James Patrick; Fryer, Chris Lee; Mendel, Susan Marie

2016-05-11

Constraining the behavior of cosmic ray data observed at Earth requires a precise understanding of how the cosmic rays propagate in the interstellar medium. The interstellar medium is not homogeneous; although turbulent magnetic fields dominate over large scales, small coherent regions of magnetic field exist on scales relevant to particle propagation in the nearby Galaxy. Guided propagation through a coherent field is significantly different from random particle diffusion and could be the explanation of spatial anisotropies in the observed cosmic rays. We present a Monte Carlo code to propagate cosmic particle through realistic magnetic field structures. We discuss the detailsmore » of the model as well as some preliminary studies which indicate that coherent magnetic structures are important effects in local cosmic-ray propagation, increasing the flux of cosmic rays by over two orders of magnitude at anisotropic locations on the sky. Furthermore, the features induced by coherent magnetic structure could be the cause of the observed TeV cosmic-ray anisotropy.« less

EXPLAINING TEV COSMIC-RAY ANISOTROPIES WITH NON-DIFFUSIVE COSMIC-RAY PROPAGATION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harding, J. Patrick; Fryer, Chris L.; Mendel, Susan, E-mail: jpharding@lanl.gov, E-mail: fryer@lanl.gov, E-mail: smendel@lanl.gov

2016-05-10

Constraining the behavior of cosmic ray data observed at Earth requires a precise understanding of how the cosmic rays propagate in the interstellar medium. The interstellar medium is not homogeneous; although turbulent magnetic fields dominate over large scales, small coherent regions of magnetic field exist on scales relevant to particle propagation in the nearby Galaxy. Guided propagation through a coherent field is significantly different from random particle diffusion and could be the explanation of spatial anisotropies in the observed cosmic rays. We present a Monte Carlo code to propagate cosmic particle through realistic magnetic field structures. We discuss the detailsmore » of the model as well as some preliminary studies which indicate that coherent magnetic structures are important effects in local cosmic-ray propagation, increasing the flux of cosmic rays by over two orders of magnitude at anisotropic locations on the sky. The features induced by coherent magnetic structure could be the cause of the observed TeV cosmic-ray anisotropy.« less

Structural properties of prokaryotic promoter regions correlate with functional features.

PubMed

Meysman, Pieter; Collado-Vides, Julio; Morett, Enrique; Viola, Roberto; Engelen, Kristof; Laukens, Kris

2014-01-01

The structural properties of the DNA molecule are known to play a critical role in transcription. In this paper, the structural profiles of promoter regions were studied within the context of their diversity and their function for eleven prokaryotic species; Escherichia coli, Klebsiella pneumoniae, Salmonella Typhimurium, Pseudomonas auroginosa, Geobacter sulfurreducens Helicobacter pylori, Chlamydophila pneumoniae, Synechocystis sp., Synechoccocus elongates, Bacillus anthracis, and the archaea Sulfolobus solfataricus. The main anchor point for these promoter regions were transcription start sites identified through high-throughput experiments or collected within large curated databases. Prokaryotic promoter regions were found to be less stable and less flexible than the genomic mean across all studied species. However, direct comparison between species revealed differences in their structural profiles that can not solely be explained by the difference in genomic GC content. In addition, comparison with functional data revealed that there are patterns in the promoter structural profiles that can be linked to specific functional loci, such as sigma factor regulation or transcription factor binding. Interestingly, a novel structural element clearly visible near the transcription start site was found in genes associated with essential cellular functions and growth in several species. Our analyses reveals the great diversity in promoter structural profiles both between and within prokaryotic species. We observed relationships between structural diversity and functional features that are interesting prospects for further research to yet uncharacterized functional loci defined by DNA structural properties.

Solution structure of Syrian hamster prion protein rPrP(90-231).

PubMed

Liu, H; Farr-Jones, S; Ulyanov, N B; Llinas, M; Marqusee, S; Groth, D; Cohen, F E; Prusiner, S B; James, T L

1999-04-27

NMR has been used to refine the structure of Syrian hamster (SHa) prion protein rPrP(90-231), which is commensurate with the infectious protease-resistant core of the scrapie prion protein PrPSc. The structure of rPrP(90-231), refolded to resemble the normal cellular isoform PrPC spectroscopically and immunologically, has been studied using multidimensional NMR; initial results were published [James et al. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 10086-10091]. We now report refinement with better definition revealing important structural and dynamic features which can be related to biological observations pertinent to prion diseases. Structure refinement was based on 2778 unambiguously assigned nuclear Overhauser effect (NOE) connectivities, 297 ambiguous NOE restraints, and 63 scalar coupling constants (3JHNHa). The structure is represented by an ensemble of 25 best-scoring structures from 100 structures calculated using ARIA/X-PLOR and further refined with restrained molecular dynamics using the AMBER 4.1 force field with an explicit shell of water molecules. The rPrP(90-231) structure features a core domain (residues 125-228), with a backbone atomic root-mean-square deviation (RMSD) of 0.67 A, consisting of three alpha-helices (residues 144-154, 172-193, and 200-227) and two short antiparallel beta-strands (residues 129-131 and 161-163). The N-terminus (residues 90-119) is largely unstructured despite some sparse and weak medium-range NOEs implying the existence of bends or turns. The transition region between the core domain and flexible N-terminus, i.e., residues 113-128, consists of hydrophobic residues or glycines and does not adopt any regular secondary structure in aqueous solution. There are about 30 medium- and long-range NOEs within this hydrophobic cluster, so it clearly manifests structure. Multiple discrete conformations are evident, implying the possible existence of one or more metastable states, which may feature in conversion of PrPC to PrPSc. To obtain a more comprehensive picture of rPrP(90-231), dynamics have been studied using amide hydrogen-deuterium exchange and 15N NMR relaxation times (T1 and T2) and 15N{1H} NOE measurements. Comparison of the structure with previous reports suggests sequence-dependent features that may be reflected in a species barrier to prion disease transmission.

On the relationship between the dynamic behavior and nanoscale staggered structure of the bone

NASA Astrophysics Data System (ADS)

Qwamizadeh, Mahan; Zhang, Zuoqi; Zhou, Kun; Zhang, Yong Wei

2015-05-01

Bone, a typical load-bearing biological material, composed of ordinary base materials such as organic protein and inorganic mineral arranged in a hierarchical architecture, exhibits extraordinary mechanical properties. Up to now, most of previous studies focused on its mechanical properties under static loading. However, failure of the bone occurs often under dynamic loading. An interesting question is: Are the structural sizes and layouts of the bone related or even adapted to the functionalities demanded by its dynamic performance? In the present work, systematic finite element analysis was performed on the dynamic response of nanoscale bone structures under dynamic loading. It was found that for a fixed mineral volume fraction and unit cell area, there exists a nanoscale staggered structure at some specific feature size and layout which exhibits the fastest attenuation of stress waves. Remarkably, these specific feature sizes and layouts are in excellent agreement with those experimentally observed in the bone at the same scale, indicating that the structural size and layout of the bone at the nanoscale are evolutionarily adapted to its dynamic behavior. The present work points out the importance of dynamic effect on the biological evolution of load-bearing biological materials.

Magnetopause reconnection under various space weather conditions

NASA Astrophysics Data System (ADS)

Chen, L.; Argall, M. R.; Shuster, J. R.; Li, G.; Karimabadi, H.; Daughton, W. S.; Germaschewski, K.; Torbert, R. B.; Bhattacharjee, A.

2013-12-01

In order to develop predictive capabilities for the Sun-Earth connection, the question of how various reconnection upstream conditions influence particle energization and the stability of the reconnection current layer needs to be answered. Using magnetopause reconnection events observed by the Cluster spacecraft, we address this question by comparing the observed plasma and field features in the vicinity of the magnetopause current layer for a wide range of geomagnetic conditions including nominal times and the most severe magnetic storms. Outstanding features include: 1. Plasmoid-like structures, when observed, tend to appear in series and more frequently on the magnetosheath side of the magnetopause current layer. These plasmoids contain accelerated electrons and ions up to ~100 keV, and can prevail in guide fields ranging from nearly zero to a strength approximately equal to the reconnecting field. Associated with each of these plasmoids are a bipolar DC component and intense fluctuations in the electric fields. 2. The fastest ion outflow jets occur in the magnetospheric side of the magnetopause. 3. The plasma density transition is in general removed from the magnetopause current layer to the magnetospheric side, in contrast to the predictions of a PIC simulation and THEMIS observations [1]. Feature 1 suggests that the current layer is unstable to plasmoid formation, and that the plasmoids are effective energization sites for plasmas. The above features are not sensitive functions of the degrees of upstream asymmetries. The observation results will be compared with PIC, global hybrid as well as global Hall MHD simulations to achieve fundamental understanding of asymmetric reconnection, separating two-fluid, ion kinetic and electron kinetic effects. [1] Mozer and Pritchett, JGR, 2008

Cross Flow Parameter Calculation for Aerodynamic Analysis

NASA Technical Reports Server (NTRS)

Norman, David, Jr. (Inventor)

2014-01-01

A system and method for determining a cross flow angle for a feature on a structure. A processor unit receives location information identifying a location of the feature on the structure, determines an angle of the feature, identifies flow information for the location, determines a flow angle using the flow information, and determines the cross flow angle for the feature using the flow angle and the angle of the feature. The flow information describes a flow of fluid across the structure. The flow angle comprises an angle of the flow of fluid across the structure for the location of the feature.

Newly identified "Tunnunik" impact structure, Prince Albert Peninsula, northwestern Victoria Island, Arctic Canada

NASA Astrophysics Data System (ADS)

Dewing, Keith; Pratt, Brian R.; Hadlari, Thomas; Brent, Tom; BÉDard, Jean; Rainbird, Robert H.

2013-02-01

Regional geological mapping of the glaciated surface of northwestern Victoria Island in the western Canadian Arctic revealed an anomalous structure in otherwise flat-lying Neoproterozoic and lower Paleozoic carbonate rocks, located south of Richard Collinson Inlet. The feature is roughly circular in plan view, approximately 25 km in diameter, and characterized by quaquaversal dips of approximately 45°, decreasing laterally. The core of the feature also exhibits local vertical dips, low-angle reverse faults, and drag folds. Although brecciation was not observed, shatter cones are pervasive in all lithologies in the central area, including 723 Ma old dikes that penetrate Neoproterozoic limestones. Their abundance decreases distally, and none was observed in surrounding, horizontally bedded strata. This circular structure is interpreted as a deeply eroded meteorite impact crater of the complex type, and the dipping strata as the remnants of the central uplift. The variation in orientation and shape of shatter cones point to variably oriented stresses with the passage of the shock wave, possibly related to the presence of pore water in the target strata as well as rock type and lithological heterogeneities, especially bed thickness. Timing of impact is poorly constrained. The youngest rocks affected are Late Ordovician (approximately 450 Ma) and the impact structure is mantled by undisturbed postglacial sediments. Regional, hydrothermal dolomitization of the Ordovician limestones, possibly in the Late Devonian (approximately 360 Ma), took place before the impact, and widespread WSW-ENE-trending normal faults of probable Early Cretaceous age (approximately 130 Ma) apparently cross-cut the impact structure.

Solid and gaseous inclusions in the EDML deep ice core: origins and implications for the physical properties of polar ice

NASA Astrophysics Data System (ADS)

Faria, S. H.; Kipfstuhl, S.; Garbe, C. S.; Bendel, V.; Weikusat, C.; Weikusat, I.

2010-12-01

The great value of polar deep ice cores stems mainly from two essential features of polar ice: its crystalline structure and its impurities. They determine the physical properties of the ice matrix and provide proxies for the investigation of past climates. Experience shows that these two essential features of polar ice manifest themselves in a multiscale diversity of dynamic structures, including dislocations, grain boundaries, solid particles, air bubbles, clathrate hydrates and cloudy bands, among others. The fact that these structures are dynamic implies that they evolve with time through intricate interactions between the crystalline structure, impurities, and the ice flow. Records of these interactions have been carefully investigated in samples of the EPICA deep ice core drilled in Dronning Maud Land, Antarctica (75°S, 0°E, 2882 m elevation, 2774.15 m core length). Here we show how the distributions of sizes and shapes of air bubbles correlate with impurities and the crystalline structure, how the interaction between moving grain boundaries and micro-inclusions changes with ice depth and temperature, as well as the possible causes for the abrupt change in ice rheology observed in the MIS6-MIS5e transition. We also discuss how these observations may affect the flow of the ice sheet and the interpretation of paleoclimate records. Micrograph of an EDML sample from 555m depth. One can identify air bubbles (dark, round objects), microinclusions (tiny defocused spots), and a grain boundary pinned by a bubble. The width of the image is 700 micrometers.

The crustal structure of the Enderby Basin, East Antarctica

NASA Astrophysics Data System (ADS)

Davis, Joshua K.; Lawver, Lawrence A.; Norton, Ian O.; Dalziel, Ian W. D.; Gahagan, Lisa M.

2018-05-01

The passive margin and ocean crust of the Enderby Basin, East Antarctica preserves a record of the breakup of East Gondwana. Using a suite of public domain geophysical data, we have examined and described the crustal morphology of the basin. Based on our geophysical observations, we divide the Enderby Basin into three distinct morphologic domains. The Eastern Domain demonstrates the most volcanic morphology of the basin, with abundant seaward dipping reflector packages and anomalously thick oceanic crust. These features suggest an early influence by the Kerguelen Hotspot on continental breakup within the domain. The Central Domain is characterized by two regions of oceanic crust of varying morphology segregated by a high amplitude magnetic anomaly. Geophysical observations suggest that the basement directly inboard of this magnetic anomaly is composed of thin, rugged, and poorly structured, proto-oceanic crust, similar in morphology to oceanic crust formed at ultraslow/slow mid-ocean ridged. Outboard of this anomaly, oceanic crust appears to be well-structured and of normal thickness. We offer three, non-exclusive, explanations for the observed change in ocean crustal structure: (1) melt production was initially low at the time of continental breakup, and the progressive decompression of the mantle led to a gradual increase in melt production and ocean crust thickness, (2) melt production was initially low to due lower extension rates and that melt production increased following a change in spreading rate, (3) a change in spreading ridge geometry led to more effective seafloor spreading rate and concurrent increase in melt production. The Western Domain of the Enderby Basin is characterized by abundant fracture zones and anomalously thin oceanic crust. We believe these features arose as a geometric consequence of the originally oblique orientation of continental rifting relative to the extension direction within the domain. Together these observations suggest that the breakup of East Gondwana was highly variable, with notable along-strike differences in crustal deformation and seafloor spreading processes.

Fingerprints of nucleosynthesis in the local spiral arm

NASA Technical Reports Server (NTRS)

Knoedlseder, J.; Bennett, K.; Bloemen, H.; Diehl, R.; Hermsen, W.; Oberlack, U.; Ryan, J.; Schoenfelder, V.; vonBallmoos, P.

1997-01-01

The local spiral arm with its inherent massive star population is a natural site of recent nucleosynthesis activity. The features found in 1.8 MeV observation of candidate Al-26 sources situated in this structure are discussed. The emphasis is on Loop 1, a nearby superbubble which is possibly the site of a recent supernova explosion.

Bio-Nanocombinatoric Synthesis and Quorum Sensing

DTIC Science & Technology

2015-10-09

inputs and biotemplating of nanomaterials; and 3) informatic /analytical feedback, which provides output measurement refinement 15. SUBJECT TERMS 16...nanomaterials; and 3) informatic /analytical feedback, which provides output measurement and refinement. To this end, we have successfully generated...microfibers. 5   Basic features of the experimental system and observations of the multicompartment structures: We can encapsulate oil droplets in

The research of some polygraphic paper samples's polarization characteristics

NASA Astrophysics Data System (ADS)

Gavryliak, Mykhailo S.; Dobrovolskyi, Yuriy G.; Motrych, Artem V.; Arkhelyuk, Alexander D.

2018-01-01

Methods of investigation the polarization characteristics of certain types of polygraph paper were described. The most effective method for estimation of the characteristic features of optical heterogeneities of polygraph paper was proposed. The greatest sensitivity to the structural organization of optical heterogeneities of paper was observed for linearly polarized light beams with 90 degree polarization azimuth.

Who is "Daddy" Revisited: The Status of Two-Year-Olds' Over-Extended Words in Use and Comprehension

ERIC Educational Resources Information Center

Thomson, Jean R.; Chapman, Robin S.

1977-01-01

Diary observations of two-year-olds' over-extended word use have been interpreted as arising from the word's underlying semantic feature structure. This interpretation was rejected after a study of five children. The need to construct models of early word meaning reflecting certain early language development patterns is discussed. (CHK)

Determination of precipitation profiles from airborne passive microwave radiometric measurements

NASA Technical Reports Server (NTRS)

Kummerow, Christian; Hakkarinen, Ida M.; Pierce, Harold F.; Weinman, James A.

1991-01-01

This study presents the first quantitative retrievals of vertical profiles of precipitation derived from multispectral passive microwave radiometry. Measurements of microwave brightness temperature (Tb) obtained by a NASA high-altitude research aircraft are related to profiles of rainfall rate through a multichannel piecewise-linear statistical regression procedure. Statistics for Tb are obtained from a set of cloud radiative models representing a wide variety of convective, stratiform, and anvil structures. The retrieval scheme itself determines which cloud model best fits the observed meteorological conditions. Retrieved rainfall rate profiles are converted to equivalent radar reflectivity for comparison with observed reflectivities from a ground-based research radar. Results for two case studies, a stratiform rain situation and an intense convective thunderstorm, show that the radiometrically derived profiles capture the major features of the observed vertical structure of hydrometer density.

probing the atmosphere with high power, high resolution radars

NASA Technical Reports Server (NTRS)

Hardy, K. R.; Katz, I.

1969-01-01

Observations of radar echoes from the clear atmosphere are presented and the scattering mechanisms responsible for the two basic types of clear-air echoes are discussed. The commonly observed dot echo originates from a point in space and usually shows little variation in echo intensity over periods of about 0.1 second. The second type of clear-air radar echo appears diffuse in space, and signal intensities vary considerably over periods of less than 0.1 second. The echoes often occur in thin horizontal layers or as boundaries of convective activity; these are characterized by sharp gradients of refractive index. Some features of clear-air atmospheric structures as observed with radar are presented. These structures include thin stable inversions, convective thermals, Benard convection cells, breaking gravity waves, and high tropospheric layers which are sufficiently turbulent to affect aircraft.

Modelling of the Saturnian Kilometric Radiation (SKR)

NASA Astrophysics Data System (ADS)

Cecconi, B.; Lamy, L.; Prangé, R.; Zarka, P.; Hess, S.; Clarke, J. T.; Nichols, J.

2008-12-01

The Saturnian Kilometric Radiation (SKR), discovered by the Voyager spacecraft in the 1980's, is observed quasi-continuously by Cassini since 2003. Study of 3 years of SKR observations by RPWS (Radio and Plasma Wave Science) revealed three recurrent features of SKR dynamic spectra : (i) discrete arcs, presumably caused by the anisotropy of the radio emission pattern combined to the observer's motion, (ii) an equatorial shadow zone around the planet (observed near perikrones) and (iii) signal extinctions at high northern latitudes. We model these features using the code PRES (Planetary Radio Emission Simulator) that assumes radio emissions to be generated via the Cyclotron Maser Instability for simulating observed dynamic spectra. We show that observed arc-like structures imply radio sources in partial (~90%) corotation, located on magnetic field lines of invariant latitude 70° to 75°, and emitting at oblique angle from the local magnetic field with a cone angle that varies with frequency. Then, based on the previously demonstrated conjugacy between UV and SKR sources, we successfully model the equatorial shadow zone as well as northern latitude SKR extinctions assuming time variable radio sources distributed along field lines with footprints along the daily UV oval measured from HST images.

Silica-rich deposits and hydrated minerals at Gusev Crater, Mars: Vis-NIR spectral characterization and regional mapping

USGS Publications Warehouse

Rice, M.S.; Bell, J.F.; Cloutis, E.A.; Wang, A.; Ruff, S.W.; Craig, M.A.; Bailey, D.T.; Johnson, J. R.; De Souza, P.A.; Farrand, W. H.

2010-01-01

The Mars Exploration Rover (MER) Spirit has discovered surprisingly high concentrations of amorphous silica in soil and nodular outcrops in the Inner Basin of the Columbia Hills. In Pancam multispectral observations, we find that an absorption feature at the longest Pancam wavelength (1009 nm) appears to be characteristic of these silica-rich materials; however, spectral analyses of amorphous silica suggest that the ???1009 nm spectral feature is not a direct reflection of their silica-rich nature. Based on comparisons with spectral databases, we hypothesize that the presence of H2O or OH, either free (as water ice), adsorbed or bound in a mineral structure, is responsible for the spectral feature observed by Pancam. The Gertrude Weise soil, which is nearly pure opaline silica, may have adsorbed water cold-trapped on mineral grains. The origin of the ???1009 nm Pancam feature observed in the silica-rich nodular outcrops may result from the presence of additional hydrated minerals (specific sulfates, halides, chlorides, sodium silicates, carbonates or borates). Using the ???1009 nm feature with other spectral parameters as a "hydration signature" we have mapped the occurrence of hydrated materials along the extent of Spirit's traverse across the Columbia Hills from West Spur to Home Plate (sols 155-1696). We have also mapped this hydration signature across large panoramic images to understand the regional distribution of materials that are spectrally similar to the silica-rich soil and nodular outcrops. Our results suggest that hydrated materials are common in the Columbia Hills. ?? 2009 Elsevier Inc.

Structure of Solar Ejecta

NASA Astrophysics Data System (ADS)

Muñoz, G.; Cantó, J.; Lara, A.; González, R.; Schwenn, R.

Solar Ejecta (SE) have been of interest in the last years, especially those which may reach Earth environment. It is possible to observe the SE early evolution, when they are in the field of view of coronagraphs. There are few indirect observations, as the case of interplanetary scintillation, of SEs in the interplanetary medium. Finally, we observe SEs in situ when they arrive at 1 AU.The SEs structure and evolution are important to understand the origin of these phenomena but to predict the possible effects in the space weather. It is of general acceptance that SEs are "Erupting Flux Ropes" traveling trough the Solar Wind. The "shapes" have been modeled as cylinders or as "ice cream cones" in order to represent the many different projections observed on Coronagraphs.We present a model of the SE evolution based on purely Hydrodynamic considerations. This model reproduces in good approximation some of the features observed in the images and in the measures of the shocks near Earth.

Quantitative Wood Anatomy-Practical Guidelines.

PubMed

von Arx, Georg; Crivellaro, Alan; Prendin, Angela L; Čufar, Katarina; Carrer, Marco

2016-01-01

Quantitative wood anatomy analyzes the variability of xylem anatomical features in trees, shrubs, and herbaceous species to address research questions related to plant functioning, growth, and environment. Among the more frequently considered anatomical features are lumen dimensions and wall thickness of conducting cells, fibers, and several ray properties. The structural properties of each xylem anatomical feature are mostly fixed once they are formed, and define to a large extent its functionality, including transport and storage of water, nutrients, sugars, and hormones, and providing mechanical support. The anatomical features can often be localized within an annual growth ring, which allows to establish intra-annual past and present structure-function relationships and its sensitivity to environmental variability. However, there are many methodological challenges to handle when aiming at producing (large) data sets of xylem anatomical data. Here we describe the different steps from wood sample collection to xylem anatomical data, provide guidance and identify pitfalls, and present different image-analysis tools for the quantification of anatomical features, in particular conducting cells. We show that each data production step from sample collection in the field, microslide preparation in the lab, image capturing through an optical microscope and image analysis with specific tools can readily introduce measurement errors between 5 and 30% and more, whereby the magnitude usually increases the smaller the anatomical features. Such measurement errors-if not avoided or corrected-may make it impossible to extract meaningful xylem anatomical data in light of the rather small range of variability in many anatomical features as observed, for example, within time series of individual plants. Following a rigid protocol and quality control as proposed in this paper is thus mandatory to use quantitative data of xylem anatomical features as a powerful source for many research topics.

Quantitative Wood Anatomy—Practical Guidelines

PubMed Central

von Arx, Georg; Crivellaro, Alan; Prendin, Angela L.; Čufar, Katarina; Carrer, Marco

2016-01-01

Quantitative wood anatomy analyzes the variability of xylem anatomical features in trees, shrubs, and herbaceous species to address research questions related to plant functioning, growth, and environment. Among the more frequently considered anatomical features are lumen dimensions and wall thickness of conducting cells, fibers, and several ray properties. The structural properties of each xylem anatomical feature are mostly fixed once they are formed, and define to a large extent its functionality, including transport and storage of water, nutrients, sugars, and hormones, and providing mechanical support. The anatomical features can often be localized within an annual growth ring, which allows to establish intra-annual past and present structure-function relationships and its sensitivity to environmental variability. However, there are many methodological challenges to handle when aiming at producing (large) data sets of xylem anatomical data. Here we describe the different steps from wood sample collection to xylem anatomical data, provide guidance and identify pitfalls, and present different image-analysis tools for the quantification of anatomical features, in particular conducting cells. We show that each data production step from sample collection in the field, microslide preparation in the lab, image capturing through an optical microscope and image analysis with specific tools can readily introduce measurement errors between 5 and 30% and more, whereby the magnitude usually increases the smaller the anatomical features. Such measurement errors—if not avoided or corrected—may make it impossible to extract meaningful xylem anatomical data in light of the rather small range of variability in many anatomical features as observed, for example, within time series of individual plants. Following a rigid protocol and quality control as proposed in this paper is thus mandatory to use quantitative data of xylem anatomical features as a powerful source for many research topics. PMID:27375641

Radiation biology of HZE particles

NASA Technical Reports Server (NTRS)

Nelson, Gregory A.

1990-01-01

The biological effects of heavy charged particle (HZE) radiation are of particular interest to travellers and planners for long duration space flights where exposure levels represent a potential health hazard. The unique feature of HZE radiation is the structured pattern of its energy deposition in targets which may be related to charge, velocity, or rate of energy loss. There are many consequences of this feature to biological endpoints when compared to effects of ionizing photons. Dose vs response and dose rate kinetics are modified, DNA and cellular repair systems are altered in their abilities to cope with damage and, the qualitative features of damage are unique for different ions. These features must be incorporated into any risk assessment system for radiation health management. HZE induced mutation, cell inactivation and altered organogenesis will be discussed emphasizing studies with the nematode Caenorhabditis elegans and cultured cells. Observations from radiobiology experiments in space will also be reviewed along with plans for future space-based studies.

Insights from the Structure of Mycobacterium tuberculosis Topoisomerase I with a Novel Protein Fold

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tan, Kemin; Cao, Nan; Cheng, Bokun

The DNA topoisomerase I enzyme of Mycobacterium tuberculosis (MtTOP1) is essential for the viability of the organism and survival in a murine model. This topoisomerase is being pursued as a novel target for the discovery of new therapeutic agents for the treatment of drug-resistant tuberculosis. In this study, we succeeded in obtaining a structure of MtTOP1 by first predicting that the C-terminal region of MtTOP1 contains four repeated domains that do not involve the Zn-binding tetracysteine motifs seen in the C-terminal domains of Escherichia coli topoisomerase I. A construct (amino acids A2-T704), MtTOP1-704t, that includes the N-terminal domains (D1-D4) andmore » the first predicted C-terminal domain (D5) of MtTOP1 was expressed and found to retain DNA cleavage-religation activity and catalyze single-stranded DNA catenation. MtTOP1-704t was crystallized, and a structure of 2.52 angstrom resolution limit was obtained. The structure of the MtTOP1 N-terminal domains has features that have not been observed in other previously available bacterial topoisomerase I crystal structures. The first C-terminal domain D5 forms a novel protein fold of a four-stranded antiparallel beta-sheet stabilized by a crossing-over alpha-helix. Since there is only one type IA topoisomerase present in Mycobacteriaceae and related Actinobacteria, this subfamily of type IA topoisomerase may be required for multiple functions in DNA replication, transcription, recombination, and repair. The unique structural features observed for MtTOP1 may allow these topoisomerase I enzymes to carry out physiological functions associated with topoisomerase III enzyme in other bacteria.« less

Structural hierarchy as a key to complex phase selection in Al-Sm

NASA Astrophysics Data System (ADS)

Ye, Z.; Zhang, F.; Sun, Y.; Nguyen, M. C.; Zhou, S. H.; Zhou, L.; Meng, F.; Ott, R. T.; Park, E.; Besser, M. F.; Kramer, M. J.; Ding, Z. J.; Mendelev, M. I.; Wang, C. Z.; Napolitano, R. E.; Ho, K. M.

2017-10-01

Investigating the unknown structure of the complex cubic phase, previously observed to crystallize from melt-spun amorphous Al-10 at.% Sm alloy, we determine the structure in full site-occupancy detail, highlighting several critical structural features that govern the far-from-equilibrium phase selection pathway. Using an efficient genetic algorithm combining molecular dynamics, density functional theory, and x-ray diffraction, the structure is clearly identified as body-centered cubic I m 3 ¯m (No. 229) with ˜140 atoms per cubic unit cell and a lattice parameter of 1.4 nm. The complex structure is further refined to elucidate the detailed site occupancy, revealing full Sm occupancy on 6b sites and split Sm/Al occupancy on 16f sites. Based on the refined site occupancy associated with the experimentally observed phase, we term this phase ɛ -A l60S m11 (bcc), corresponding to the limiting situation when all 16f sites are occupied by Sm. However, it should be recognized that the range of solubility enabled by split occupancy at Sm sites is an important feature in phase selection under experimental conditions, permitting an avenue for transition with little or no chemical partitioning. Our analysis shows that the ɛ -A l60S m11 (bcc) exhibits a "3-6-6-1" first-shell packing around Sm centers on 16f sites, the same dominant motif exhibited by the undercooled liquid. The coincident motif supports the notion that liquid/glass ordering at high undercooling may give rise to topological invariants between the noncrystalline and crystalline states that provide kinetic pathways to metastable phases that are not accessible during near-equilibrium processing.

Common and divergent structural features of a series of corticotropin releasing factor-related peptides.

PubMed

Grace, Christy Rani R; Perrin, Marilyn H; Cantle, Jeffrey P; Vale, Wylie W; Rivier, Jean E; Riek, Roland

2007-12-26

Members of the corticoliberin family include the corticotropin releasing factors (CRFs), sauvagine, the urotensins, and urocortin 1 (Ucn1), which bind to both the CRF receptors CRF-R1 and CRF-R2, and the urocortins 2 (Ucn2) and 3 (Ucn3), which are selective agonists of CRF-R2. Structure activity relationship studies led to several potent and long-acting analogues with selective binding to either one of the receptors. NMR structures of six ligands of this family (the antagonists astressin B and astressin2-B, the agonists stressin1, and the natural ligands human Ucn1, Ucn2, and Ucn3) were determined in DMSO. These six peptides show differences in binding affinities, receptor-selectivity, and NMR structure. Overall, their backbones are alpha-helical, with a small kink or a turn around residues 25-27, resulting in a helix-loop-helix motif. The C-terminal helices are of amphipathic nature, whereas the N-terminal helices vary in their amphipathicity. The C-terminal helices thereby assume a conformation very similar to that of astressin bound to the ECD1 of CRF-R2 recently reported by our group.1 On the basis of an analysis of the observed 3D structures and relative potencies of [Ala]-substituted analogues, it is proposed that both helices could play a crucial role in receptor binding and selectivity. In conclusion, the C-terminal helices may interact along their hydrophobic faces with the ECD1, whereas the entire N-terminal helical surface may be involved in receptor activation. On the basis of the common and divergent features observed in the 3D structures of these ligands, multiple binding models are proposed that may explain their plurality of actions.

Structural hierarchy as a key to complex phase selection in Al-Sm

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ye, Z.; Zhang, F.; Sun, Y.

Investigating the unknown structure of the complex cubic phase, previously observed to crystallize from melt-spun amorphous Al–10 at.% Sm alloy, we determine the structure in full site-occupancy detail, highlighting several critical structural features that govern the far-from-equilibrium phase selection pathway. Using an efficient genetic algorithm combining molecular dynamics, density functional theory, and x-ray diffraction, the structure is clearly identified as body-centered cubic Im¯3m (No. 229) with ~140 atoms per cubic unit cell and a lattice parameter of 1.4 nm. The complex structure is further refined to elucidate the detailed site occupancy, revealing full Sm occupancy on 6b sites and splitmore » Sm/Al occupancy on 16f sites. Based on the refined site occupancy associated with the experimentally observed phase, we term this phase ε–Al 60Sm 11(bcc), corresponding to the limiting situation when all 16f sites are occupied by Sm. However, it should be recognized that the range of solubility enabled by split occupancy at Sm sites is an important feature in phase selection under experimental conditions, permitting an avenue for transition with little or no chemical partitioning. Our analysis shows that the ε–Al 60Sm 11(bcc) exhibits a “3-6-6-1” first-shell packing around Sm centers on 16f sites, the same dominant motif exhibited by the undercooled liquid. Here, the coincident motif supports the notion that liquid/glass ordering at high undercooling may give rise to topological invariants between the noncrystalline and crystalline states that provide kinetic pathways to metastable phases that are not accessible during near-equilibrium processing.« less

Structural hierarchy as a key to complex phase selection in Al-Sm

DOE PAGES

Ye, Z.; Zhang, F.; Sun, Y.; ...

2017-10-12

Investigating the unknown structure of the complex cubic phase, previously observed to crystallize from melt-spun amorphous Al–10 at.% Sm alloy, we determine the structure in full site-occupancy detail, highlighting several critical structural features that govern the far-from-equilibrium phase selection pathway. Using an efficient genetic algorithm combining molecular dynamics, density functional theory, and x-ray diffraction, the structure is clearly identified as body-centered cubic Im¯3m (No. 229) with ~140 atoms per cubic unit cell and a lattice parameter of 1.4 nm. The complex structure is further refined to elucidate the detailed site occupancy, revealing full Sm occupancy on 6b sites and splitmore » Sm/Al occupancy on 16f sites. Based on the refined site occupancy associated with the experimentally observed phase, we term this phase ε–Al 60Sm 11(bcc), corresponding to the limiting situation when all 16f sites are occupied by Sm. However, it should be recognized that the range of solubility enabled by split occupancy at Sm sites is an important feature in phase selection under experimental conditions, permitting an avenue for transition with little or no chemical partitioning. Our analysis shows that the ε–Al 60Sm 11(bcc) exhibits a “3-6-6-1” first-shell packing around Sm centers on 16f sites, the same dominant motif exhibited by the undercooled liquid. Here, the coincident motif supports the notion that liquid/glass ordering at high undercooling may give rise to topological invariants between the noncrystalline and crystalline states that provide kinetic pathways to metastable phases that are not accessible during near-equilibrium processing.« less

Plasticity-Driven Self-Organization under Topological Constraints Accounts for Non-random Features of Cortical Synaptic Wiring

PubMed Central

Miner, Daniel; Triesch, Jochen

2016-01-01

Understanding the structure and dynamics of cortical connectivity is vital to understanding cortical function. Experimental data strongly suggest that local recurrent connectivity in the cortex is significantly non-random, exhibiting, for example, above-chance bidirectionality and an overrepresentation of certain triangular motifs. Additional evidence suggests a significant distance dependency to connectivity over a local scale of a few hundred microns, and particular patterns of synaptic turnover dynamics, including a heavy-tailed distribution of synaptic efficacies, a power law distribution of synaptic lifetimes, and a tendency for stronger synapses to be more stable over time. Understanding how many of these non-random features simultaneously arise would provide valuable insights into the development and function of the cortex. While previous work has modeled some of the individual features of local cortical wiring, there is no model that begins to comprehensively account for all of them. We present a spiking network model of a rodent Layer 5 cortical slice which, via the interactions of a few simple biologically motivated intrinsic, synaptic, and structural plasticity mechanisms, qualitatively reproduces these non-random effects when combined with simple topological constraints. Our model suggests that mechanisms of self-organization arising from a small number of plasticity rules provide a parsimonious explanation for numerous experimentally observed non-random features of recurrent cortical wiring. Interestingly, similar mechanisms have been shown to endow recurrent networks with powerful learning abilities, suggesting that these mechanism are central to understanding both structure and function of cortical synaptic wiring. PMID:26866369

The universality of β-hairpin misfolding indicated by molecular dynamics simulations.

PubMed

Shao, Qiang; Wang, Jinan; Shi, Jiye; Zhu, Weiliang

2013-10-28

Previous molecular dynamics simulations showed that besides the experimentally measured folded structures, several β-structured polypeptides could also have misfolded "out-of-register" structures. Through the enhanced sampling molecular dynamics simulations on a series of polypeptides using either implicit or explicit solvent model, the present study systematically investigated the universality of β-hairpin misfolding and its determinants. It was observed that the misfolding could take place for almost all polypeptides under study, especially in the presence of weak side chain hydrophobicity. Moreover, the observed misfolded structures for various polypeptides share the following common features: (1) the turn length in misfolded structure is one-residue shorter than that in folded structure; (2) the hydrophobic side chains on the two strands are pointed to the opposite directions instead of packing in the same direction to form hydrophobic core cluster in the folded structure; and (3) the misfolded structure is one-residue-shifted asymmetric β-hairpin structure. The detailed analysis suggested that the misfolding of β-hairpin is the result of the competition between the formation of the alterable turn configurations and the inter-strand hydrophobic interactions. These predictions are desired to be tested by experiments.

The universality of β-hairpin misfolding indicated by molecular dynamics simulations

NASA Astrophysics Data System (ADS)

Shao, Qiang; Wang, Jinan; Shi, Jiye; Zhu, Weiliang

2013-10-01

Previous molecular dynamics simulations showed that besides the experimentally measured folded structures, several β-structured polypeptides could also have misfolded "out-of-register" structures. Through the enhanced sampling molecular dynamics simulations on a series of polypeptides using either implicit or explicit solvent model, the present study systematically investigated the universality of β-hairpin misfolding and its determinants. It was observed that the misfolding could take place for almost all polypeptides under study, especially in the presence of weak side chain hydrophobicity. Moreover, the observed misfolded structures for various polypeptides share the following common features: (1) the turn length in misfolded structure is one-residue shorter than that in folded structure; (2) the hydrophobic side chains on the two strands are pointed to the opposite directions instead of packing in the same direction to form hydrophobic core cluster in the folded structure; and (3) the misfolded structure is one-residue-shifted asymmetric β-hairpin structure. The detailed analysis suggested that the misfolding of β-hairpin is the result of the competition between the formation of the alterable turn configurations and the inter-strand hydrophobic interactions. These predictions are desired to be tested by experiments.

Deciphering the Influence of Crustal Flexure and Shear Along the Margins of the Eastern Snake River Plain

NASA Astrophysics Data System (ADS)

Parker, S. D.

2016-12-01

The kinematic evolution of the eastern Snake River Plain (ESRP) remains highly contested. A lack of strike-slip faults bounding the ESRP serves as a primary assumption in many leading kinematic models. Recent GPS geodesy has highlighted possible shear zones along the ESRP yet regional strike-slip faults remain unidentified. Oblique movement within dense arrays of high-angle conjugate normal faults, paralleling the ESRP, occur within a discrete zone of 50 km on both margins of the ESRP. These features have long been attributed to progressive crustal flexure and subsidence within the ESRP, but are capable of accommodating the observed strain without necessitating large scale strike-slip faults. Deformation features within an extensive Neogene conglomerate provide field evidence for dextral shear in a transtensional system along the northern margin of the ESRP. Pressure-solution pits and cobble striations provide evidence for a horizontal ENE/WSW maximum principal stress orientation, consistent with the hypothesis of a dextral Centennial shear zone. Fold hinges, erosional surfaces and stratigraphic datums plunging perpendicular into the ESRP have been attributed to crustal flexure and subsidence of the ESRP. Similar Quaternary folds plunge obliquely into the ESRP along its margins where diminishing offset along active normal faults trends into linear volcanic features. In all cases, orientations and distributions of plunging fold structures display a correlation to the terminus of active Basin and Range faults and linear volcanic features of the ESRP. An alternative kinematic model, rooted in kinematic disparities between Basin and Range faults and parallelling volcanic features may explain the observed downwarping as well as provide a mechanism for the observed shear along the margins of the ESRP. By integrating field observations with seismic, geodetic and geomorphic observations this study attempts to decipher the signatures of crustal flexure and shear along the margins of the ESRP. Decoupling the influence of these distinct processes on deformation features bounding the ESRP will aid in our understanding of the kinematic evolution of this highly complex region.

Biological Indicators in Studies of Earthquake Precursors

NASA Astrophysics Data System (ADS)

Sidorin, A. Ya.; Deshcherevskii, A. V.

2012-04-01

Time series of data on variations in the electric activity (EA) of four species of weakly electric fish Gnathonemus leopoldianus and moving activity (MA) of two cat-fishes Hoplosternum thoracatum and two groups of Columbian cockroaches Blaberus craniifer were analyzed. The observations were carried out in the Garm region of Tajikistan within the frameworks of the experiments aimed at searching for earthquake precursors. An automatic recording system continuously recorded EA and DA over a period of several years. Hourly means EA and MA values were processed. Approximately 100 different parameters were calculated on the basis of six initial EA and MA time series, which characterize different variations in the EA and DA structure: amplitude of the signal and fluctuations of activity, parameters of diurnal rhythms, correlated changes in the activity of various biological indicators, and others. A detailed analysis of the statistical structure of the total array of parametric time series obtained in the experiment showed that the behavior of all animals shows a strong temporal variability. All calculated parameters are unstable and subject to frequent changes. A comparison of the data obtained with seismicity allow us to make the following conclusions: (1) The structure of variations in the studied parameters is represented by flicker noise or even a more complex process with permanent changes in its characteristics. Significant statistics are required to prove the cause-and-effect relationship of the specific features of such time series with seismicity. (2) The calculation of the reconstruction statistics in the EA and MA series structure demonstrated an increase in their frequency in the last hours or a few days before the earthquake if the hypocenter distance is comparable to the source size. Sufficiently dramatic anomalies in the behavior of catfishes and cockroaches (changes in the amplitude of activity variation, distortions of diurnal rhythms, increase in the mismatch of coordination between the activity dynamics of one type of biological indicators) were observed in one case before the November 12, 1987, event at a hypocenter distance of 8 km from the observation point (i.e., the animals were located within the source zone). (3) Changes observed before the earthquakes do not have any specific features and correspond quite well to the variations permanently observed without any relation to the earthquakes. (4) The activity of individual specimens has specific features. This hampers the implication of the biological monitoring. (5) The conclusions made here should not be considered absolute or extrapolated over all cases of observation of the behavior of animals, because the animals were kept under experimental (laboratory) conditions and could be screened from the influence of the stimuli of some modalities.

Features of polar cusp electron precipitation associated with a large magnetic storm

NASA Technical Reports Server (NTRS)

Berko, F. W.

1974-01-01

Measurements of precipitating electrons made by the OGO-4 satellite reveal several interesting phenomena in the polar cusp. Extremely high fluxes of 0.7 keV electrons were observed in the polar cusp ninety minutes following the sudden commencement of a very large magnetic storm. Structured, fairly high fluxes of 7.3 keV electrons were also observed in the cusp region, accompanied by very strong search coil magnetometer fluctuations, indicative of strong field-aligned currents. The observations confirm previously reported latitudinal shifts in the location of the polar cusp in response to southward interplanetary magnetic fields.

Limb-darkening and the structure of the Jovian atmosphere

NASA Technical Reports Server (NTRS)

Newman, W. I.; Sagan, C.

1978-01-01

By observing the transit of various cloud features across the Jovian disk, limb-darkening curves were constructed for three regions in the 4.6 to 5.1 mu cm band. Several models currently employed in describing the radiative or dynamical properties of planetary atmospheres are here examined to understand their implications for limb-darkening. The statistical problem of fitting these models to the observed data is reviewed and methods for applying multiple regression analysis are discussed. Analysis of variance techniques are introduced to test the viability of a given physical process as a cause of the observed limb-darkening.

Learning about the internal structure of categories through classification and feature inference.

PubMed

Jee, Benjamin D; Wiley, Jennifer

2014-01-01

Previous research on category learning has found that classification tasks produce representations that are skewed toward diagnostic feature dimensions, whereas feature inference tasks lead to richer representations of within-category structure. Yet, prior studies often measure category knowledge through tasks that involve identifying only the typical features of a category. This neglects an important aspect of a category's internal structure: how typical and atypical features are distributed within a category. The present experiments tested the hypothesis that inference learning results in richer knowledge of internal category structure than classification learning. We introduced several new measures to probe learners' representations of within-category structure. Experiment 1 found that participants in the inference condition learned and used a wider range of feature dimensions than classification learners. Classification learners, however, were more sensitive to the presence of atypical features within categories. Experiment 2 provided converging evidence that classification learners were more likely to incorporate atypical features into their representations. Inference learners were less likely to encode atypical category features, even in a "partial inference" condition that focused learners' attention on the feature dimensions relevant to classification. Overall, these results are contrary to the hypothesis that inference learning produces superior knowledge of within-category structure. Although inference learning promoted representations that included a broad range of category-typical features, classification learning promoted greater sensitivity to the distribution of typical and atypical features within categories.

Si K EDGE STRUCTURE AND VARIABILITY IN GALACTIC X-RAY BINARIES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schulz, Norbert S.; Corrales, Lia; Canizares, Claude R.

2016-08-10

We survey the Si K edge structure in various absorbed Galactic low-mass X-ray binaries (LMXBs) to study states of silicon in the inter- and circum-stellar medium. The bulk of these LMXBs lie toward the Galactic bulge region and all have column densities above 10{sup 22} cm{sup −2}. The observations were performed using the Chandra High Energy Transmission Grating Spectrometer. The Si K edge in all sources appears at an energy value of 1844 ± 0.001 eV. The edge exhibits significant substructure that can be described by a near edge absorption feature at 1849 ± 0.002 eV and a far edgemore » absorption feature at 1865 ± 0.002 eV. Both of these absorption features appear variable with equivalent widths up to several mÅ. We can describe the edge structure using several components: multiple edge functions, near edge absorption excesses from silicates in dust form, signatures from X-ray scattering optical depths, and a variable warm absorber from ionized atomic silicon. The measured optical depths of the edges indicate much higher values than expected from atomic silicon cross sections and interstellar medium abundances, and they appear consistent with predictions from silicate X-ray absorption and scattering. A comparison with models also indicates a preference for larger dust grain sizes. In many cases, we identify Si xiii resonance absorption and determine ionization parameters between log ξ = 1.8 and 2.8 and turbulent velocities between 300 and 1000 km s{sup −1}. This places the warm absorber in close vicinity of the X-ray binaries. In some data, we observe a weak edge at 1.840 keV, potentially from a lesser contribution of neutral atomic silicon.« less

Micromorphology of cactus-pear (Opuntia ficus-indica (L.) Mill) cladodes based on scanning microscopies.

PubMed

Ben Salem-Fnayou, Asma; Zemni, Hassène; Nefzaoui, Ali; Ghorbel, Abdelwahed

2014-01-01

Cladode ultrastructural features of two prickly and two spineless Opuntia ficus-indica cultivars were examined using environmental scanning electron and atomic force microscopies. Observations focused on cladode as well as spine and glochid surface micromorphologies. Prickly cultivars were characterized by abundant cracked epicuticular wax deposits covering the cladode surface, with an amorphous structure as observed by AFM, while less abundant waxy plates were observed by ESEM on spineless cultivar cladodes. Further AFM observations allowed a rough granular and crystalloid epicuticular wax structure to be distinguished in spineless cultivars. Regarding spine micromorphology, prickly cultivars had strong persistent spines, observed by ESEM as a compact arrangement of oblong epidermal cells with a rough granular structure. However, deciduous spines in spineless cultivars had a broken transversely fissured epidermis covering a parallel arrangement of fibres. Through AFM, the deciduous spine surface presented an irregular hilly and smooth microrelief while persistent spines exhibited rough helical filamentous prints. ESEM and AFM studies of cladode surfaces from prickly and spineless cactus pear cultivars revealed valuable micro-morphological details that ought to be extended to a large number of O. ficus-indica cultivars. Copyright © 2013 Elsevier Ltd. All rights reserved.

Analysis of nanopore arrangement and structural features of anodic alumina layers formed by two-step anodizing in oxalic acid using the dedicated executable software

NASA Astrophysics Data System (ADS)

Zaraska, Leszek; Stępniowski, Wojciech J.; Sulka, Grzegorz D.; Ciepiela, Eryk; Jaskuła, Marian

2014-02-01

Anodic porous alumina layers were fabricated by a two-step self-organized anodization in 0.3 M oxalic acid under various anodizing potentials ranging from 30 to 60 V at two different temperatures (10 and 17 ∘C). The effect of anodizing conditions on structural features and pore arrangement of AAO was investigated in detail by using the dedicated executable publication combined with ImageJ software. With increasing anodizing potential, a linear increase of the average pore diameter, interpore distance, wall thickness and barrier layer thickness, as well as a decrease of the pore density, were observed. In addition, the higher pore diameter and porosity values were obtained for samples anodized at the elevated temperature, independently of the anodizing potential. A degree of pore order was investigated on the basis of Delaunay triangulations (defect maps) and calculation of pair distribution or angle distribution functions (PDF or ADF), respectively. All methods confirmed that in order to obtain nanoporous alumina with the best, hexagonal pore arrangement, the potential of 40 V should be applied during anodization. It was confirmed that the dedicated executable publication can be used to a fast and complex analysis of nanopore arrangement and structural features of nanoporous oxide layers.

Identification of F impurities in F-doped ZnO by synchrotron X-ray absorption near edge structures

NASA Astrophysics Data System (ADS)

Na-Phattalung, Sutassana; Limpijumnong, Sukit; Min, Chul-Hee; Cho, Deok-Yong; Lee, Seung-Ran; Char, Kookrin; Yu, Jaejun

2018-04-01

Synchrotron X-ray absorption near edge structure (XANES) measurements of F K-edge in conjunction with first-principles calculations are used to identify the local structure of the fluorine (F) atom in F-doped ZnO. The ZnO film was grown by pulsed laser deposition with an Nd:YAG laser, and an oxyfluoridation method was used to introduce F ions into the ZnO films. The measured XANES spectrum of the sample was compared against the first-principles XANES calculations based on various models for local atomic structures surrounding F atoms. The observed spectral features are attributed to ZnF2 and FO defects in wurtzite bulk ZnO.

Voyager 1 imaging and IRIS observations of Jovian methane absorption and thermal emission: Implications for cloud structure

NASA Technical Reports Server (NTRS)

West, R. A.; Kupferman, P. N.; Hart, H.

1984-01-01

Images from three filters of the Voyager 1 wide angle camera are used to measure the continuum reflectivity and spectral gradient near 6000 A and the 6190 A band methane/continuum ratio for a variety of cloud features in Jupiter's atmosphere. The dark barge features in the North Equatorial Belt have anomalously strong positive continuum spectral gradients suggesting unique composition. Methane absorption is shown at unprecedented spatial scales for the Great Red Spot and its immediate environment, for a dark barge feature in the North Equatorial Belt, and for two hot spot and plume regions in the North Equatorial Belt. Methane absorption and five micrometer emission are correlated in the vicinity of the Great Red Spot but are anticorrelated in one of the plume hot spot regions. Methane absorption and simultaneous maps of five micrometer brightness temperature is quantitatively compared to realistic cloud structure models which include multiple scattering at five micrometer as well as in the visible. Variability in H2 quadrupole lines are also investigated.

Self-assembled nanoparticle arrays as nanomasks for pattern transfer

NASA Astrophysics Data System (ADS)

Sachan, M.; Bonnoit, C.; Hogg, C.; Evarts, E.; Bain, J. A.; Majetich, S. A.; Park, J.-H.; Zhu, J.-G.

2008-07-01

Argon ion milling was used to transfer the pattern of sparse 12 nm iron oxide nanoparticles into underlying thin films of Pt and magnetic tunnel junction stacks and quantify their etching rates and morphological evolution. Under typical milling conditions, Pt milled at 10 nm min-1, while the isolated particles of iron oxide used for the mask milled at 5 nm min-1. Dilute dispersions of nanoparticles were used to produce the sparse nanomasks, and high resolution scanning electron microscopy (SEM) and atomic force microscopy were used to monitor the evolution of etched structures as a function of milling time. SEM measurements indicate an apparent 20% increase in feature diameter before the features began to diminish under additional milling, suggesting redeposition as a limiting feature in the milling of dense arrays. Simulations of the milling process in nanoparticle arrays that include redeposition are consistent with this observation. These simulations predict that an edge-to-edge spacing of 3 nm in a dense array is feasible, but that redeposition reduces the final structure aspect ratio from that of the masking array by as much as a factor of two.

Genome-Wide Analysis of Transposon and Retroviral Insertions Reveals Preferential Integrations in Regions of DNA Flexibility.

PubMed

Vrljicak, Pavle; Tao, Shijie; Varshney, Gaurav K; Quach, Helen Ngoc Bao; Joshi, Adita; LaFave, Matthew C; Burgess, Shawn M; Sampath, Karuna

2016-04-07

DNA transposons and retroviruses are important transgenic tools for genome engineering. An important consideration affecting the choice of transgenic vector is their insertion site preferences. Previous large-scale analyses of Ds transposon integration sites in plants were done on the basis of reporter gene expression or germ-line transmission, making it difficult to discern vertebrate integration preferences. Here, we compare over 1300 Ds transposon integration sites in zebrafish with Tol2 transposon and retroviral integration sites. Genome-wide analysis shows that Ds integration sites in the presence or absence of marker selection are remarkably similar and distributed throughout the genome. No strict motif was found, but a preference for structural features in the target DNA associated with DNA flexibility (Twist, Tilt, Rise, Roll, Shift, and Slide) was observed. Remarkably, this feature is also found in transposon and retroviral integrations in maize and mouse cells. Our findings show that structural features influence the integration of heterologous DNA in genomes, and have implications for targeted genome engineering. Copyright © 2016 Vrljicak et al.

CheS-Mapper - Chemical Space Mapping and Visualization in 3D.

PubMed

Gütlein, Martin; Karwath, Andreas; Kramer, Stefan

2012-03-17

Analyzing chemical datasets is a challenging task for scientific researchers in the field of chemoinformatics. It is important, yet difficult to understand the relationship between the structure of chemical compounds, their physico-chemical properties, and biological or toxic effects. To that respect, visualization tools can help to better comprehend the underlying correlations. Our recently developed 3D molecular viewer CheS-Mapper (Chemical Space Mapper) divides large datasets into clusters of similar compounds and consequently arranges them in 3D space, such that their spatial proximity reflects their similarity. The user can indirectly determine similarity, by selecting which features to employ in the process. The tool can use and calculate different kind of features, like structural fragments as well as quantitative chemical descriptors. These features can be highlighted within CheS-Mapper, which aids the chemist to better understand patterns and regularities and relate the observations to established scientific knowledge. As a final function, the tool can also be used to select and export specific subsets of a given dataset for further analysis.

CheS-Mapper - Chemical Space Mapping and Visualization in 3D

PubMed Central

2012-01-01

Analyzing chemical datasets is a challenging task for scientific researchers in the field of chemoinformatics. It is important, yet difficult to understand the relationship between the structure of chemical compounds, their physico-chemical properties, and biological or toxic effects. To that respect, visualization tools can help to better comprehend the underlying correlations. Our recently developed 3D molecular viewer CheS-Mapper (Chemical Space Mapper) divides large datasets into clusters of similar compounds and consequently arranges them in 3D space, such that their spatial proximity reflects their similarity. The user can indirectly determine similarity, by selecting which features to employ in the process. The tool can use and calculate different kind of features, like structural fragments as well as quantitative chemical descriptors. These features can be highlighted within CheS-Mapper, which aids the chemist to better understand patterns and regularities and relate the observations to established scientific knowledge. As a final function, the tool can also be used to select and export specific subsets of a given dataset for further analysis. PMID:22424447

Voyager 1 imaging and IRIS observations of Jovian methane absorption and thermal emission - Implications for cloud structure

NASA Technical Reports Server (NTRS)

West, R. A.; Kupferman, P. N.; Hart, H.

1985-01-01

Images from three filters of the Voyager 1 wide angle camera are used to measure the continuum reflectivity and spectral gradient near 6000 A and the 6190 A band methane/continuum ratio for a variety of cloud features in Jupiter's atmosphere. The dark barge features in the North Equatorial Belt have anomalously strong positive continuum spectral gradients suggesting unique composition. Methane absorption is shown at unprecedented spatial scales for the Great Red Spot and its immediate environment, for a dark barge feature in the North Equatorial Belt, and for two hot spot and plume regions in the North Equatorial Belt. Methane absorption and five micrometer emission are correlated in the vicinity of the Great Red Spot but are anticorrelated in one of the plume hot spot regions. Methane absorption and simultaneous maps of five micrometer brightness temperature are quantitatively compared to realistic cloud structure models which include multiple scattering at five micrometer as well as in the visible. Variability in H2 quadrupole lines are also investigated.

Density and temperature structure over northern Europe

NASA Technical Reports Server (NTRS)

Philbrick, C. R.; Schmidlin, F. J.; Grossmann, K. U.; Lange, G.; Offermann, D.; Baker, K. D.; Krankowsky, D.; Von Zahn, U.

1985-01-01

During the Energy Budget Campaign, a number of profiles of the density and temperature were obtained to study the structure and variability of the atmosphere. The measurements were made using rocketborne instrumentation launched from Esrange, Sweden, and Andoya Rocket Range, Norway, during November and December 1980. The techniques included meteorological temperature sondes, passive falling sphere, accelerometer instrumented falling spheres, density gauges, mass spectrometers and infrared emission experiments. The instruments provided data covering the altitude range from 20 to 150 km. The measurements were made during periods which have been grouped into three categories by level of geomagnetic activity. Analysis has been made to compare the results and to examine the wave features and variations in the vertical profiles for scales ranging between hundreds of meters and tens of kilometers. Most of the features observed fit qualitatively within the range expected for internal gravity waves. However, the features in the profiles during one of the measurement periods are unusual and may be due to aurorally generated shock waves. The geomagnetic storm conditions caused temperature increases in the lower thermosphere which maximized in the 120-140 km region.

Cloud structure of the nearest brown dwarfs. II: High-amplitude variability for Luhman 16 A and B in and out of the 0.99 μm FeH feature

DOE PAGES

Buenzli, Esther; Marley, Mark S.; Apai, Daniel; ...

2015-10-20

The re-emergence of the 0.99 μm FeH feature in brown dwarfs of early- to mid-T spectral type has been suggested as evidence for cloud disruption where flux from deep, hot regions below the Fe cloud deck can emerge. The same mechanism could account for color changes at the L/T transition and photometric variability. We present the first observations of spectroscopic variability of brown dwarfs covering the 0.99 μm FeH feature. We observed the spatially resolved very nearby brown dwarf binary WISE J104915.57–531906.1 (Luhman 16AB), a late-L and early-T dwarf, with Hubble Space Telescope/WFC3 in the G102 grism at 0.8–1.15 μm.more » We find significant variability at all wavelengths for both brown dwarfs, with peak-to-valley amplitudes of 9.3% for Luhman 16B and 4.5% for Luhman 16A. This represents the first unambiguous detection of variability in Luhman 16A. We estimate a rotational period between 4.5 and 5.5 hr, very similar to Luhman 16B. Variability in both components complicates the interpretation of spatially unresolved observations. The probability for finding large amplitude variability in any two brown dwarfs is less than 10%. Our finding may suggest that a common but yet unknown feature of the binary is important for the occurrence of variability. For both objects, the amplitude is nearly constant at all wavelengths except in the deep K i feature below 0.84 μm. No variations are seen across the 0.99 μm FeH feature. The observations lend strong further support to cloud height variations rather than holes in the silicate clouds, but cannot fully rule out holes in the iron clouds. Here, we re-evaluate the diagnostic potential of the FeH feature as a tracer of cloud patchiness.« less

Protein–Mineral Interactions: Molecular Dynamics Simulations Capture Importance of Variations in Mineral Surface Composition and Structure

DOE Office of Scientific and Technical Information (OSTI.GOV)

Andersen, Amity; Reardon, Patrick N.; Chacon, Stephany S.

Molecular dynamics simulations, conventional and metadynamics, were performed to determine the interaction of model protein Gb1 over kaolinite (001), Na+-montmorillonite (001), Ca2+-montmorillonite (001), goethite (100), and Na+-birnessite (001) mineral surfaces. Gb1, a small (56 residue) protein with a well-characterized solution-state nuclear magnetic resonance (NMR) structure and having α-helix, four-fold β-sheet, and hydrophobic core features, is used as a model protein to study protein soil mineral interactions and gain insights on structural changes and potential degradation of protein. From our simulations, we observe little change to the hydrated Gb1 structure over the kaolinite, montmorillonite, and goethite surfaces relative to its solvatedmore » structure without these mineral surfaces present. Over the Na+-birnessite basal surface, however, the Gb1 structure is highly disturbed as a result of interaction with this birnessite surface. Unraveling of the Gb1 β-sheet at specific turns and a partial unraveling of the α-helix is observed over birnessite, which suggests specific vulnerable residue sites for oxidation or hydrolysis possibly leading to fragmentation.« less

Potassium-argon (argon-argon), structural fabrics

USGS Publications Warehouse

Cosca, Michael A.; Rink, W. Jack; Thompson, Jereon

2014-01-01

Definition: 40Ar/39Ar geochronology of structural fabrics: The application of 40Ar/39Ar methods to date development of structural fabrics in geologic samples. Introduction: Structural fabrics develop during rock deformation at variable pressures (P), temperatures (T), fluid compositions (X), and time (t). Structural fabrics are represented in rocks by features such as foliations and shear zones developed at the mm to km scale. In ideal cases, the P-T-X history of a given structural fabric can be constrained using stable isotope, cation exchange, and/or mineral equilibria thermobarometry (Essene 1989). The timing of structural fabric development can be assessed qualitatively using geologic field observations or quantitatively using isotope-based geochronology. High-precision geochronology of the thermal and fluid flow histories associated with structural fabric development can answer fundamental geologic questions including (1) when hydrothermal fluids transported and deposited ore minerals, ...

Adsorption isotherms of water on mica: redistribution and film growth.

PubMed

Malani, Ateeque; Ayappa, K G

2009-01-29

Adsorption isotherms of water on muscovite mica are obtained using grand canonical Monte Carlo simulations over a wide range of relative vapor pressures, p/p(0) at 298 K. Three distinct stages are observed in the adsorption isotherm. A sharp rise in the water coverage occurs for 0 < p/p(0) < 0.1. This is followed by a relatively slow increase in the coverage for 0.1 < or = p/p(0) < or = 0.7. Above p/p(0) = 0.7, a second increase in the coverage occurs due to the adsorption of water with bulklike features. The derived film thickness and isotherm shape for the simple point charge (SPC) water model is in excellent agreement with recent experiments of Balmer et al. [ Langmuir 2008 , 24 , 1566 ]. A novel observation is the significant redistribution of water between adsorbed layers as the water film develops. This redistribution is most pronounced for 0.1 < or = p/p(0) < or = 0.7, where water is depleted from the inner layers and film growth is initiated on the outer layer. During this stage, potassium hydration is found to play a dominant role in the rearrangement of water near the mica surface. The analysis of structural features reveals a strongly bound first layer of water molecules occupying the ditrigonal cavities between the potassium ions. In-plane structure of oxygen in the second layer, which forms part of the first hydration shell of potassium, reveals a liquidlike structure with the oxygen-oxygen pair correlation function displaying features similar to bulk water. Isosteric heats of adsorption were found to be in good agreement with the differential microcalorimetric data of Rakhmatkariev ( Clays Clay Miner. 2006 , 54 , 402 ), over the entire range of pressures investigated. Both SPC and extended simple point charge (SPC/E) water models were found to yield qualitatively similar adsorption and structural characteristics, with the SPC/E model predicting lower coverages than the SPC model for p/p(0) > 0.7.

Connecting traces of galaxy evolution: the missing core mass-morphological fine structure relation

NASA Astrophysics Data System (ADS)

Bonfini, P.; Bitsakis, T.; Zezas, A.; Duc, P.-A.; Iodice, E.; González-Martín, O.; Bruzual, G.; González Sanoja, A. J.

2018-01-01

Deep exposure imaging of early-type galaxies (ETGs) are revealing the second-order complexity of these objects, which have been long considered uniform, dispersion-supported spheroidals. `Fine structure' features (e.g. ripples, plumes, tidal tails, rings) as well as depleted stellar cores (i.e. central light deficits) characterize a number of massive ETG galaxies, and can be interpreted as the result of galaxy-galaxy interactions. We discuss how the time-scale for the evolution of cores and fine structures are comparable, and hence it is expected that they develop in parallel after the major interaction event which shaped the ETG. Using archival data, we compare the `depleted stellar mass' (i.e. the mass missing from the depleted stellar core) against the prominence of the fine structure features, and observe that they correlate inversely. This result confirms our expectation that, while the supermassive black hole (SMBH) binary (constituted by the SMBHs of the merger progenitors) excavates the core via three-body interactions, the gravitational potential of the newborn galaxy relaxes, and the fine structures fade below detection levels. We expect the inverse correlation to hold at least within the first Gyr from the merger which created the SMBH binary; after then, the fine structure evolves independently.

Visualizing spatial correlation: structural and electronic orders in iron-based superconductors on atomic scale

NASA Astrophysics Data System (ADS)

Maksov, Artem; Ziatdinov, Maxim; Li, Li; Sefat, Athena; Maksymovych, Petro; Kalinin, Sergei

Crystalline matter on the nanoscale level often exhibits strongly inhomogeneous structural and electronic orders, which have a profound effect on macroscopic properties. This may be caused by subtle interplay between chemical disorder, strain, magnetic, and structural order parameters. We present a novel approach based on combination of high resolution scanning tunneling microscopy/spectroscopy (STM/S) and deep data style analysis for automatic separation, extraction, and correlation of structural and electronic behavior which might lead us to uncovering the underlying sources of inhomogeneity in in iron-based family of superconductors (FeSe, BaFe2As2) . We identify STS spectral features using physically robust Bayesian linear unmixing, and show their direct relevance to the fundamental physical properties of the system, including electronic states associated with individual defects and impurities. We collect structural data from individual unit cells on the crystalline lattice, and calculate both global and local indicators of spatial correlation with electronic features, demonstrating, for the first time, a direct quantifiable connection between observed structural order parameters extracted from the STM data and electronic order parameters identified within the STS data. This research was sponsored by the Division of Materials Sciences and Engineering, Office of Science, Basic Energy Sciences, US DOE.

Fine-Scale Analysis Reveals Cryptic Landscape Genetic Structure in Desert Tortoises

PubMed Central

Latch, Emily K.; Boarman, William I.; Walde, Andrew; Fleischer, Robert C.

2011-01-01

Characterizing the effects of landscape features on genetic variation is essential for understanding how landscapes shape patterns of gene flow and spatial genetic structure of populations. Most landscape genetics studies have focused on patterns of gene flow at a regional scale. However, the genetic structure of populations at a local scale may be influenced by a unique suite of landscape variables that have little bearing on connectivity patterns observed at broader spatial scales. We investigated fine-scale spatial patterns of genetic variation and gene flow in relation to features of the landscape in desert tortoise (Gopherus agassizii), using 859 tortoises genotyped at 16 microsatellite loci with associated data on geographic location, sex, elevation, slope, and soil type, and spatial relationship to putative barriers (power lines, roads). We used spatially explicit and non-explicit Bayesian clustering algorithms to partition the sample into discrete clusters, and characterize the relationships between genetic distance and ecological variables to identify factors with the greatest influence on gene flow at a local scale. Desert tortoises exhibit weak genetic structure at a local scale, and we identified two subpopulations across the study area. Although genetic differentiation between the subpopulations was low, our landscape genetic analysis identified both natural (slope) and anthropogenic (roads) landscape variables that have significantly influenced gene flow within this local population. We show that desert tortoise movements at a local scale are influenced by features of the landscape, and that these features are different than those that influence gene flow at larger scales. Our findings are important for desert tortoise conservation and management, particularly in light of recent translocation efforts in the region. More generally, our results indicate that recent landscape changes can affect gene flow at a local scale and that their effects can be detected almost immediately. PMID:22132143