Analysis of obsidian from moho cay, belize: new evidence on classic maya trade routes.

PubMed

Healy, P F; McKillop, H I; Walsh, B

1984-07-27

Trace element analysis of obsidian artifacts from Moho Cay, Belize, reveals that the obsidian derives primarily from the El Chayal outcrop in highland Guatemala and not from the Ixtepeque source. This is contrary to the widely accepted obsidian trade route model for Classic Maya civilization and suggests that Classic Maya obsidian trade was a more complex economic phenomenon than has been recognized.

Unravelling textural heterogeneity in obsidian: Shear-induced outgassing in the Rocche Rosse flow

NASA Astrophysics Data System (ADS)

Shields, J. K.; Mader, H. M.; Caricchi, L.; Tuffen, H.; Mueller, S.; Pistone, M.; Baumgartner, L.

2016-01-01

Obsidian flow emplacement is a complex and understudied aspect of silicic volcanism. Of particular importance is the question of how highly viscous magma can lose sufficient gas in order to erupt effusively as a lava flow. Using an array of methods we study the extreme textural heterogeneity of the Rocche Rosse obsidian flow in Lipari, a 2 km long, 100 m thick, ~ 800 year old lava flow, with respect to outgassing and emplacement mechanisms. 2D and 3D vesicle analyses and density measurements are used to classify the lava into four textural types: 'glassy' obsidian (< 15% vesicles), 'pumiceous' lava (> 40% vesicles), high aspect ratio, 'shear banded' lava (20-40% vesicles) and low aspect ratio, 'frothy' obsidian with 30-60% vesicles. Textural heterogeneity is observed on all scales (m to μm) and occurs as the result of strongly localised strain. Magnetic fabric, described by oblate and prolate susceptibility ellipsoids, records high and variable degrees of shearing throughout the flow. Total water contents are derived using both thermogravimetry and infrared spectroscopy to quantify primary (magmatic) and secondary (meteoric) water. Glass water contents are between 0.08-0.25 wt.%. Water analysis also reveals an increase in water content from glassy obsidian bands towards 'frothy' bands of 0.06-0.08 wt.%, reflecting preferential vesiculation of higher water bands and an extreme sensitivity of obsidian degassing to water content. We present an outgassing model that reconciles textural, volatile and magnetic data to indicate that obsidian is generated from multiple shear-induced outgassing cycles, whereby vesicular magma outgasses and densifies through bubble collapse and fracture healing to form obsidian, which then re-vesiculates to produce 'dry' vesicular magma. Repetition of this cycle throughout magma ascent results in the low water contents of the Rocche Rosse lavas and the final stage in the degassing cycle determines final lava porosity. Heterogeneities in

Advanced signal processing analysis of laser-induced breakdown spectroscopy data for the discrimination of obsidian sources.

PubMed

Remus, Jeremiah J; Harmon, Russell S; Hark, Richard R; Haverstock, Gregory; Baron, Dirk; Potter, Ian K; Bristol, Samantha K; East, Lucille J

2012-03-01

Obsidian is a natural glass of volcanic origin and a primary resource used by indigenous peoples across North America for making tools. Geochemical studies of obsidian enhance understanding of artifact production and procurement and remain a priority activity within the archaeological community. Laser-induced breakdown spectroscopy (LIBS) is an analytical technique being examined as a means for identifying obsidian from different sources on the basis of its 'geochemical fingerprint'. This study tested whether two major California obsidian centers could be distinguished from other obsidian localities and the extent to which subsources could be recognized within each of these centers. LIBS data sets were collected in two different spectral bands (350±130 nm and 690±115 nm) using a Nd:YAG 1064 nm laser operated at ~23 mJ, a Czerny-Turner spectrograph with 0.2-0.3 nm spectral resolution and a high performance imaging charge couple device (ICCD) detector. Classification of the samples was performed using partial least-squares discriminant analysis (PLSDA), a common chemometric technique for performing statistical regression on high-dimensional data. Discrimination of samples from the Coso Volcanic Field, Bodie Hills, and other major obsidian areas in north-central California was possible with an accuracy of greater than 90% using either spectral band. © 2012 Optical Society of America

A comparison of obsidian and surgical steel scalpel wound healing in rats.

PubMed

Disa, J J; Vossoughi, J; Goldberg, N H

1993-10-01

There are several anecdotal clinical articles claiming wound healing and scar superiority using obsidian (volcanic glass) scalpels. In order to determine if skin incisions made with obsidian were superior to those made with standard surgical steel, wound tensile strength, scar width, and histology were assessed in 40 adult male Sprague-Dawley rats. Each rat received two parallel 8-cm dorsal skin incisions, one with an obsidian scalpel and the other with a surgical steel scalpel (no. 15 blade). Data were analyzed by ANOVA. Tensile strength of the two wound types was not different at 7, 14, 21, and 42 days. Scar width, however, was significantly less in the obsidian wounds at 7, 10, and 14 days (p < 0.005). At 21 days, scar width was not different in the two groups. At 42 days, all wounds were barely detectable, thus precluding scar width analysis. A blinded histologic review suggested that obsidian wounds contained fewer inflammatory cells and less granulation tissue at 7 days.

Obsidian hydration profiles measured by sputter-induced optical emission.

PubMed

Tsong, I S; Houser, C A; Yusef, N A; Messier, R F; White, W B; Michels, J W

1978-07-28

The variation of concentrations of hydrogen, sodium, potassium, lithium, calcium, magnesium, silicon, and aluminum as a function of depth in the hydration layer of obsidian artifacts has been determined by sputter-induced optical emission. The surface hydration is accompanied by dealkalization, and there is a buildup of alkaline earths, calcium and magnesium in the outermost layers. These results have clarified the phenomena underlying the obsidian hydration dating technique.

Hydration rate of obsidian.

PubMed

Friedman, I; Long, W

1976-01-30

The hydration rates of 12 obsidian samples of different chemical compositions were measured at temperatures from 95 degrees to 245 degrees C. An expression relating hydration rate to temperature was derived for each sample. The SiO(2) content and refractive index are related to the hydration rate, as are the CaO, MgO, and original water contents. With this information it is possible to calculate the hydration rate of a sample from its silica content, refractive index, or chemical index and a knowledge of the effective temperature at which the hydration occurred. The effective hydration temperature can be either measured or approximated from weather records. Rates have been calculated by both methods, and the results show that weather records can give a good approximation to the true EHT, particularly in tropical and subtropical climates. If one determines the EHT by any of the methods suggested, and also measures or knows the rate of hydration of the particular obsidian used, it should be possible to carry out absolute dating to +/- 10 percent of the true age over periods as short as several years and as long as millions of years.

Emplacement model of obsidian-rhyolite magma deduced from complete internal section of the Akaishiyama lava, Shirataki, northern Hokkaido, Japan

NASA Astrophysics Data System (ADS)

Wada, K.; Sano, K.

2016-12-01

Simultaneously explosive and effusive eruptions of silicic magmas has shed light on the vesiculation and outgassing history of ascending magmas in the conduit and emplacement model of obsidian-rhyolite lavas (Castro et al., 2014; Shipper et al, 2013). As well as the knowledge of newly erupted products such as 2008-2009 Chaitén and 2011-2012 Cordón Caule eruptions, field and micro-textural evidences of well-exposed internal structure of obsidian-rhyolite lava leads to reveal eruption processes of silicic magmas. The Shirataki monogenetic volcano field, 2.2 million year age, northern Hokkaido, Japan, contains many outcrops of obsidian and vesiculated rhyolite zones (SiO2=76.7-77.4 wt.%). Among their outcrops, Akaishiyama lava shows good exposures of internal sections from the top to the bottom along the Kyukasawa valley with thickness of about 190 meters, showing the symmetrical structure comprising a upper clastic zone (UCZ; 5m thick), an upper dense obsidian zone (UDO; 15m), an upper banded obsidian zone (UBO; 70-80m), a central rhyolite zone (CR; 65m), a lower banded obsidian zone (LBO; 15m), a lower dense obsidian zone (LDO; 20m), and a lower clastic zone (LCZ; 3m). The upper banded obsidian zone is characterized by existence of spherulite concentration layers with tuffisite veins and rhyolite enclaves. Spherulites consisting of albite, cristobalaite and obsidian glass, are clustered in the dense obsidian. Tuffisite veins show brecciated obsidians in tuffaceous matrix, showing an outgassing path during the emplacement of obsidian lava. Perpendicular dip of spherulite parallel rows indicates the banded zone itself was the domain of vent area. From the observation of these occurrences in the internal section and rock texture, we show the qualitative formation model of Shirataki obsidian-rhyolite lava.

Magma fracturing and degassing associated with obsidian formation: The explosive–effusive transition

USGS Publications Warehouse

Cabrera, Agustin; Weinberg, Roberto; Wright, Heather M.

2015-01-01

This paper explores the role of melt fracturing in degassing rhyolitic volcanic systems. The Monte Pilato-Rocche Rosse eruptions in Italy evolved from explosive to effusive in style, and H2O content in quenched glasses changed over time from relatively H2O-rich (~ 0.90 wt.%) to H2O-poor dense obsidian (~ 0.10–0.20 wt.%). In addition, healed fractures have been recorded in all different eruptive materials, from the glass of early-erupted tube pumice and rinds of breadcrusted obsidian pyroclasts, to the glass of late-erupted dense obsidian pyroclasts, and throughout the final effusive Rocche Rosse lava flow. These rocks show multiple fault sets, some with crenulated fault planes indicating resumption of viscous flow after faulting, complex obsidian breccias with evidence for post-brecciation folding and stretching, and centimetre- to metre-thick tuffisite preserved in pyroclasts and lava, representing collapsed foam due to fracturing of vesicle walls. These microstructural observations indicate that multiple fracturing and healing events occurred during both explosive and effusive eruptions. H2O content in glass decreases by as much as 0.14 wt.% towards healed fractures/faults and decreases in stretched obsidian breccias towards regions of intense brecciation. A drop in pressure and/or increase in temperature along fractures caused diffusive H2O migration through melt towards fracture surfaces. Repetitive and pervasive fracturing and healing thereby create conditions for diffusive H2O loss into fractures and subsequent escape through permeable paths. This type of progressive magma degassing provides a potential mechanism to explain the formation of dense obsidian and the evolution from explosive to effusive eruption style.

Multiple Origins of Pyroclastic Obsidian and Implications for Changes in the Dynamics of the 1300 BP eruption of Newberry Volcano, USA

NASA Astrophysics Data System (ADS)

Rust, A. C.; Cashman, K. V.

2005-12-01

Like many rhyolite tephras, the pyroclastic deposits of the 1300 B.P. eruption of Newberry Volcano, USA, contain minor amounts of obsidian. The H2O and CO2 contents and textures of these clasts vary considerably and provide information on eruption history and dynamics. Early in the eruption, obsidian probably derived from veins of vanguard magma or tuffisite that, together with wall rock fragments, were eroded and incorporated into the eruption column as the vent widened. Later, following a temporary cessation of activity, the proportion of obsidian to lithic fragments increased and new types of obsidian dominated, types that represent remnants of a shallow conduit plug and welded fallback material. Analysis of bubble geometries provide flow parameters and time scales operative for deformation within the shallow conduit. Furthermore, spatial variations in CO2 help constrain welding and wall rock assimilation time scales. Comparison of obsidian characteristics from the Newberry eruption with those of the well-studied Mono Craters eruption shows intriguing differences in obsidian formation that may relate to the nature of the conduit feeding the two events. From this comparison we conclude that obsidian is less likely to provide information on magmatic fragmentation than on time scales and mechanisms of pre-fragmentation magma ascent.

Obsidian dating and East african archeology.

PubMed

Michels, J W; Tsong, I S; Nelson, C M

1983-01-28

New experimental procedures have made it possible to establish specific hydration rates for the numerous compositional types of obsidian to be found at archeological sites in Kenya. Two rates are applied to artifacts from the Prospect Farm site, revealing a history of occupation extending back 120,000 years.

Formation of obsidian pyroclasts by sintering of ash particles in the volcanic conduit

NASA Astrophysics Data System (ADS)

Gardner, James E.; Llewellin, Edward W.; Watkins, James M.; Befus, Kenneth S.

2017-02-01

The ranges in intensity and style of volcanic eruptions, from highly explosive Plinian eruptions to quiescent lava extrusions, depend on the style and efficiency of gas loss from ascending magma. Obsidian pyroclasts - small, glassy pieces of quenched magma found in some volcanic tephra beds - may preserve valuable information about magma degassing in their vesicle textures and volatile contents. Accurate interpretation of their textures and volatiles, however, requires understanding the mechanism of formation of the pyroclasts. Obsidian pyroclasts from the ca. 1325-1350 C.E. North Mono eruption of Mono Craters (CA, USA) were analyzed and found to have H2O and CO2 contents indicating that they were formed at pressures in the approximate range of 3-40 MPa. Many also contain domains with differing vesicle textures, separated by boundaries containing xenocrystic material, indicating that they are composed of smaller fragments that have sutured together. More than half of the pyroclasts analyzed contained small (∼10 μm), highly distorted vesicles, with multi-cuspate morphology, interpreted as the remnants of interstitial gas trapped amongst sintered fragments of melt/glass. Rounded vesicles are also common and are interpreted to result from surface tension-driven relaxation of the distorted vesicles. Calculated timescales of sintering and relaxation are consistent with timescales for pyroclast formation indicated by H2O re-equilibration within the heterogeneous pyroclasts. This sintering model for the origin of obsidian pyroclasts is further supported by the observation that spherical vesicles are found mainly in H2O-rich pyroclasts, and distorted vesicles mainly in H2O-poor pyroclasts. We conclude that obsidian pyroclasts generated during the North Mono eruption were formed by cycles of fragmentation, sintering/suturing, and relaxation, over a very wide range of depths within the conduit; we find no evidence to support pumice (foam) collapse as the formation

Elemental, isotopic, and geochronological variability in Mogollon-Datil volcanic province archaeological obsidian, southwestern USA: Solving issues of intersource discrimination

USGS Publications Warehouse

Shackley, M. Steven; Morgan, Leah; Pyle, Douglas

2017-01-01

Solving issues of intersource discrimination in archaeological obsidian is a recurring problem in geoarchaeological investigation, particularly since the number of known sources of archaeological obsidian worldwide has grown nearly exponentially in the last few decades, and the complexity of archaeological questions asked has grown equally so. These two parallel aspects of archaeological investigation have required more exacting understanding of the geological relationship between sources and the more accurate analysis of these sources of archaeological obsidian. This is particularly the case in the North American Southwest where the frequency of archaeological investigation is some of the highest in the world, and the theory and method used to interpret that record has become increasingly nuanced. Here, we attempt to unravel the elemental similarity of archaeological obsidian in the Mogollon-Datil volcanic province of southwestern New Mexico where some of the most important and extensively distributed sources are located and the elemental similarity between the sources is great even though the distance between the sources is large. Uniting elemental, isotopic, and geochronological analyses as an intensive pilot study, we unpack this complexity to provide greater understanding of these important sources of archaeological obsidian.

Obsidian Hydration Dating in the Undergraduate Curriculum.

ERIC Educational Resources Information Center

Manche, Emanuel P.; Lakatos, Stephen

1986-01-01

Provides an overview of obsidian hydration dating for the instructor by presenting: (1) principles of the method; (2) procedures; (3) applications; and (4) limitations. The theory of the method and one or more laboratory exercises can be easily introduced into the undergraduate geology curriculum. (JN)

Obsidian in the Casas Grandes world: Procurement, exchange, and interaction in Chihuahua, Mexico, CE 1200-1450

DOE PAGES

Dolan, Sean Gregory; Whalen, Michael E.; Minnis, Paul E.; ...

2017-01-09

The Casas Grandes area in Chihuahua, Mexico and the site of Paquime was the center of one the largest regional systems in the U.S. Southwest and Mexican Northwest (SW/NW) during the Medio period (CE 1200-1450). People participated in local and distant exchange networks with groups in the SW/NW, Mesoamerica, and West Mexico. Our knowledge of which obsidian sources people used in Casas Grandes is limited, despite how obsidian could have derived from many different places. We examine how the use of specific obsidian sources may relate to broader political and economic relationships within the Casas Grandes regional system and itsmore » association with the Mimbres and Animas regions of the SW/NW. We sourced 116 artifacts using EDXRF spectrometry from four sites that neighbor Paquime. Results demonstrate people used obsidian from Chihuahua, Sonora, and New Mexico. Furthermore, there were varying levels of social interaction and regional integration because there is diversity in source use at the site level, and Casas Grandes were more connected to the Animas region than Mimbres regarding obsidian resource procurement.« less

Obsidian in the Casas Grandes world: Procurement, exchange, and interaction in Chihuahua, Mexico, CE 1200-1450

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dolan, Sean Gregory; Whalen, Michael E.; Minnis, Paul E.

The Casas Grandes area in Chihuahua, Mexico and the site of Paquime was the center of one the largest regional systems in the U.S. Southwest and Mexican Northwest (SW/NW) during the Medio period (CE 1200-1450). People participated in local and distant exchange networks with groups in the SW/NW, Mesoamerica, and West Mexico. Our knowledge of which obsidian sources people used in Casas Grandes is limited, despite how obsidian could have derived from many different places. We examine how the use of specific obsidian sources may relate to broader political and economic relationships within the Casas Grandes regional system and itsmore » association with the Mimbres and Animas regions of the SW/NW. We sourced 116 artifacts using EDXRF spectrometry from four sites that neighbor Paquime. Results demonstrate people used obsidian from Chihuahua, Sonora, and New Mexico. Furthermore, there were varying levels of social interaction and regional integration because there is diversity in source use at the site level, and Casas Grandes were more connected to the Animas region than Mimbres regarding obsidian resource procurement.« less

Observations of obsidian lava flow emplacement at Puyehue-Cordón Caulle, Chile

NASA Astrophysics Data System (ADS)

Tuffen, H.; Castro, J. M.; Schipper, C. I.; James, M. R.

2012-04-01

The dynamics of obsidian lava flow emplacement remain poorly understood as active obsidian lavas are seldom seen. In contrast with well-documented basaltic lavas, we lack observational data on obsidian flow advance and temporal evolution. The ongoing silicic eruption at Puyehue-Cordón Caulle volcanic complex (PCCVC), southern Chile provides an unprecedented opportunity to witness and study obsidian lava on the move. The eruption, which started explosively on June 4th 2011, has since June 20 generated an active obsidian flow field that remains active at the time of writing (January 2012), with an area of ~6 km2, and estimated volume of ~0.18 km3. We report on observations, imaging and sampling of the north-western lava flow field on January 4th and 10th 2012, when vent activity was characterised by near-continuous ash venting and Vulcanian explosions (Schipper et al, this session) and was simultaneously feeding the advancing obsidian flow (Castro et al, this session). On January 4th the north-western lava flow front was characterised by two dominant facies: predominant rubbly lava approximately 30-40 m thick and mantled by unstable talus aprons, and smoother, thinner lobes of more continuous lava ~50 m in length that extended roughly perpendicular to the overall flow direction, forming lobes that protrude from the flow margin, and lacked talus aprons. The latter lava facies closely resembled squeeze-up structures in basaltic lava flows[1] and appeared to originate from and overlie the talus apron of the rubbly lava. Its upper surface consisted of smooth, gently folded lava domains cut by crevasse-like tension gashes. During ~2 hours of observation the squeeze-up lava lobe was the most frequent location of small-volume rockfalls, which occurred at ~1-10 minute intervals from the flow front and indicated a locus of lava advance. On January 10th the squeeze-up lava lobes had evolved significantly, with disruption and breakage of smooth continuous lava surfaces to form

Obsidian trade routes in the mayan area.

PubMed

Hammond, N

1972-12-08

Obsidian from two sources in highland Guatemala has been found at 23 sites of the Classic Mayan civilization, mainly in the nonvolcanic lowlands to the north. The distribution, together with trade routes suggested by topography and documentary sources, suggests efficient waterborne transport and competition between sources for the lowland market.

Eruptive dynamics and hazards associated with obsidian bearing ignimbrites of the Geghama Volcanic Highland, Central Armenia: a textural insight

NASA Astrophysics Data System (ADS)

Matthews, Zoe; Manning, Christina J.

2017-04-01

The Geghama Volcanic highland in central Armenia is an ideal setting to study the young ( 750-25 ka [1]) volcanism that characterises the Lesser Caucasus region. The volcanism in the area is bimodal in composition: the eastern highlands are dominated by numerous monogenetic scoria cones, whilst the west shows more evolved volcanism centered on two obsidian bearing, polygenetic domes (Hatis and Gutanasar) [2]. Activity at Hatis and Gutanasar is thought to have spanned 550ka-200ka [3] and produced a range of products including obsidian flows, ignimbrites and basaltic scoria cones, consistent with long lived and complex magma storage systems. During a similar time period there is evidence for the presence of hominin groups in the surrounding region [3] and it is likely that at least some of the volcanic activity at Hatis and Gutanasar impacted on their distribution [4]. A better understanding of the eruptive behaviour of these volcanoes during this period could therefore shed light on the effect of volcanic activity on the dispersal of man through this period. Whilst large regional studies have striven to better understand the timing and source of volcanism in Armenia, there have been few detailed studies on single volcanoes. Obsidian is ubiquitous within the volcanic material of both Gutanasar and Hatis as lava flows, dome deposits and within ignimbrites. This study aims to better understand the eruptive history of Gutanasar, with specific focus upon the determination of the petrogenetic history of obsidian lenses observed within the ignimbrite deposits. Identification of these obsidians as the result of welding or in-situ melting will help constrain eruptive volumes and flow thickness, important for the reconstruction of palaeo-volcanic hazards. In order to interpret how this obsidian was deposited, macro textural analysis is combined with micro textural measurements of microlite crystals. Quantitative measurements of microlites in obsidian can provide significant

Cooling and crystallization of rhyolite-obsidian lava: Insights from micron-scale projections on plagioclase microlites

NASA Astrophysics Data System (ADS)

Sano, Kyohei; Toramaru, Atsushi

2017-07-01

To reveal the cooling process of a rhyolite-obsidian flow, we studied the morphology of plagioclase microlites in the Tokachi-Ishizawa lava of Shirataki, northern Hokkaido, Japan, where the structure of the lava can be observed from obsidian at the base of the flow to the innermost rhyolite. Needle-like micron-scale textures, known as "projections", occur on the short side surfaces of the plagioclase microlites. Using FE-SEM we discovered a positive correlation between the lengths and spacings of these projections. On the basis of the instability theory of an interface between melt and crystal, and to understand the length and spacing data, we developed a model that explains the positive correlation and allows us to simultaneously estimate growth rates and growth times. Applying the model to our morphological data and the estimated growth rates and growth times, we suggest that the characteristics of the projections reflect the degree of undercooling, which in turn correlates with lava structure (the obsidian at the margin of the flow experienced a higher degree of undercooling than the interior rhyolite). The newly developed method provides insights into the degree of undercooling during the final stages of crystallization of a rhyolitic lava flow.

Electric Properties of Obsidian: Evidence for Positive Hole Charge Carriers

NASA Astrophysics Data System (ADS)

Nordvik, R.; Freund, F. T.

2012-12-01

The blackness of obsidian is due to the presence of oxygen anions in the valence state 1-, creating broad energy levels at the upper edge of the valence band, which absorb visible light over a wide spectral range. These energy states are associated with defect electrons in the oxygen anion sublattice, well-known from "smoky quartz", where Al substituting for Si captures a defect electron in the oxygen anion sublattice for charge compensation [1]. Such defect electrons, also known as positive holes, are responsible for the increase in electrical conductivity in igneous rocks when uniaxial stresses are applied, causing the break-up of pre-existing peroxy defects, Si-OO-Si [2]. Peroxy defects in obsidian cannot be so easily activated by mechanical stress because the glassy matrix will break before sufficiently high stress levels can be reached. If peroxy defects do exist, however, they can be studied by activating them thermally [3]. We describe experiments with rectangular slabs of obsidian with Au electrodes at both ends. Upon heating one end, we observe (i) a thermopotential and (ii) a thermocurrent developing at distinct temperatures around 250°C and 450°C, marking the 2-step break-up of peroxy bonds. [1] Schnadt, R., and Schneider, J.: The electronic structure of the trapped-hole center in smoky quartz, Zeitschrift Physik B Condensed Matter 11, 19-42, 1970. [2] Freund, F. T., Takeuchi, A., and Lau, B. W.: Electric currents streaming out of stressed igneous rocks - A step towards understanding pre-earthquake low frequency EM emissions, Physics and Chemistry of the Earth, 31, 389-396, 2006. [3] Freund, F., and Masuda, M. M.: Highly mobile oxygen hole-type charge carriers in fused silica, Journal Material Research, 8, 1619-1622, 1991.

Fingerprints in the Great Basin: The Nellis Air Force Base Regional Obsidian Sourcing Study

DTIC Science & Technology

2005-01-01

obsidian-bearing alluvial deposits de - parts of the magma chamber are tapped, con- rived from the regionally extensive rhyolite centrations of Ba increase...gfold wing de scripti ons of Osi u ott hneVolcanic nou st Kawic rakinge the Be Ceuntern, Oak Spring Butte, South Kawich RangeGopwr rpedbten1. n Devil...2004 field season. These de - NTTR-NTS boundary in Nye County, Nevada. scriptions provide information about geologic age The Grouse Canyon Caldera lies

Multiple origins of obsidian pyroclasts and implications for changes in the dynamics of the 1300 B.P. eruption of Newberry Volcano, USA

NASA Astrophysics Data System (ADS)

Rust, A. C.; Cashman, K. V.

2007-07-01

The pyroclastic deposits of the 1300 B.P. eruption of Newberry Volcano, OR, USA, contain minor amounts of obsidian (1-6 wt.%). The volatile (H2O and CO2) contents and textures of these clasts vary considerably. FTIR measurements of H2O in obsidian pyroclasts range from 0.1 to 1.5 wt.% indicating equilibration pressures ≤20 MPa. CO2 contents are low (<10 ppm) except in clasts that also contain xenolith powder that provided a local CO2 source. Obsidian clasts exhibit a range of color and textural types that changed in relative proportion as the eruption progressed. Together these data indicate that there were multiple origins of obsidian and that the dominant source changed during the eruption. Early in the eruption, obsidian was almost entirely black or grey (microlite-bearing) and probably derived from dikes or wall rock fractures filled with vanguard magma or tuffisite that, together with wall rocks, were eroded and incorporated into the eruption column as the vent widened. Later in the eruption, following a brief cessation of activity, the proportion of obsidian to wallrock lithic clasts increased and new types of obsidian dominated, types that represent remnants of a shallow conduit plug, welded fallback material from within the conduit, and sheared and degassed magma from near the conduit walls. Analysis of bubble shapes preserved within obsidian indicates that shear stresses and shear rates varied by over two orders of magnitude, with maxima of 88 kPa and 10-2.3 s-1, respectively, based on an assumed magma temperature of 850°C. Furthermore, the highest shear rates and stresses, and the shortest flow times (10-20 min), are preserved in clasts that also contain wall rock. The longest deformation times (5 and 8 h) correspond to two microlite-rich clasts, suggesting that the higher microlite content results from slower ascent rates and/or longer magma residence times at shallow levels. Differences between obsidian pyroclasts from the Newberry eruption and those

Melt fracturing and healing: A mechanism for degassing and origin of silicic obsidian

USGS Publications Warehouse

Cabrera, A.; Weinberg, R.F.; Wright, H.M.N.; Zlotnik, S.; Cas, Ray A.F.

2011-01-01

We present water content transects across a healed fault in pyroclastic obsidian from Lami pumice cone, Lipari, Italy, using synchrotron Fourier transform infrared spectroscopy. Results indicate that rhyolite melt degassed through the fault surface. Transects define a trough of low water content coincident with the fault trace, surrounded on either side by high-water-content plateaus. Plateaus indicate that obsidian on either side of the fault equilibrated at different pressure-temperature (P-T) conditions before being juxtaposed. The curves into the troughs indicate disequilibrium and water loss through diffusion. If we assume constant T, melt equilibrated at pressures differing by 0.74 MPa before juxtaposition, and the fault acted as a low-P permeable path for H2O that diffused from the glass within time scales of 10 and 30 min. Assuming constant P instead, melt on either side could have equilibrated at temperatures differing by as much as 100 ??C, before being brought together. Water content on the fault trace is particularly sensitive to post-healing diffusion. Its preserved value indicates either higher temperature or lower pressure than the surroundings, indicative of shear heating and dynamic decompression. Our results reveal that water contents of obsidian on either side of the faults equilibrated under different P-T conditions and were out of equilibrium with each other when they were juxtaposed due to faulting immediately before the system was quenched. Degassing due to faulting could be linked to cyclical seismic activity and general degassing during silicic volcanic activity, and could be an efficient mechanism of producing low-water-content obsidian. ?? 2011 Geological Society of America.

Use of Geologic Mapping of the Medicine Lake Volcano in NE California to Constrain Interpretation of Cultural Uses of Rhyolite Obsidian

NASA Astrophysics Data System (ADS)

de la Fuente, J. A.; Johnson, L.; Cassidy, J.; Stevens, M.

2012-12-01

Recently published geologic mapping of Medicine Lake volcano in N. California (Donnelly-Nolan, 2010) provides a context for evaluating cultural use of Pleistocene rhyolitic obsidian at the volcano. The mapping identified an area of gravel that forms a small alluvial fan. The alluvial deposit includes abundant obsidian, some as water-worn cobbles, and some as flakes of obsidian. The alluvial fan is located about 3 km south of the nearest outcrop of obsidian, which is mapped as "rhyolite of Grasshopper Flat." This rhyolite unit has been identified over a distance of 30 km on the west side of Medicine Lake volcano as distributed chemically identical outcrops along a north-northeast trend. The aphyric obsidian provided excellent raw material for cultural use by Native Americans, and projectile point styles at nearby sites suggest up to 10,000 years of utilization. Obsidian in the fan deposit includes cobbles and flakes, some of which show definite signs of water transport, to a depth of >0.6 m. In addition to the definite anthropogenic flakes in the deposit, there are also unmodified obsidian pieces. The range of variation in the amount of water wear and other weathering on the obsidian makes it difficult to tell whether some of the flakes are anthropogenic or if they were broken by natural processes. It is also difficult to determine whether some of the definite anthropogenic flakes were created on site, or if all flakes in the deposit were created at a quarry upstream and transported with the other stream material. Lastly, some of the flakes display secondary flaking, perhaps related to recent logging activities or natural processes. The presence of anthropogenic flakes in the alluvium would indicate water transport during Holocene time, since there is little evidence of human occupation prior to the Holocene. Local scatters of clearly anthropogenic flakes are also present outside the stream deposit, indicating that at least some tool-making activity occurred in the

Chemical fingerprinting and source tracing of obsidian: the central Mediterranean trade in black gold.

PubMed

Tykot, Robert H

2002-08-01

Chemical fingerprinting using major or trace element composition is used to characterize the Mediterranean island sources of obsidian and can even differentiate as many as nine flows in the Monte Arci region of Sardinia. Analysis of significant numbers of obsidian artifacts from Neolithic sites in the central Mediterranean reveals specific patterns of source exploitation and suggests particular trade mechanisms and routes. The use of techniques such as X-ray fluorescence, the electron microprobe, neutron activation analysis, and laser ablation ICP mass spectrometry are emphasized in order to produce quantitative results while minimizing damage to valuable artifacts.

Analysis of Thousands of Prehistoric Mediterranean Obsidian Artifacts Using a Nondestructive Portable X-Ray Fluorescence Spectrometer

NASA Astrophysics Data System (ADS)

Tykot, Robert

A portable, hand-held X-ray fluorescence spectrometer has been used for a decade to elementally analyze prehistoric obsidian artifacts in the Mediterranean. Nearly 400 geological obsidian samples and 7500 obsidian artifacts have been analyzed. The pXRF can distinguish all individual sources, as well as assign artifacts specifically to most subsources. For the island sources of Lipari, Pantelleria, Sardinia, and Melos, it is important to address the usage of obsidian from specific subsources due to human selection based on physical properties of the raw material and their production practices, which may have changed over time from the Early Neolithic to the Bronze Age. The analysis of 50 or more artifacts from 60 different archaeological sites allows for statistical comparison between sites, and their contexts, geographic areas (e.g. coastal/inland, highland/lowland) and distance from geological sources. The frequency of transport between island sources and mainland sites is suggestive of maritime capabilities also for the transport of domesticated animals, ceramics, and other materials. This presentation will specifically address potential limitations of the portable XRF, including non-destructive surface analysis of potentially heterogeneous materials, and limited trace element detection compared to other analytical methods, versus its highly beneficial ``package'' of analyzing great numbers of artifacts non-destructively and rapidly without needing to export them from museums and facilities in many countries.

Obsidian Pyroclasts: Where Do They Come From and What Can They Tell Us?

NASA Astrophysics Data System (ADS)

Watkins, J. M.; Gardner, J. E.; Befus, K.

2016-12-01

Models for how volcanic gases behave during volcanic eruptions are constructed from measurements of volatiles (δD, H2O and CO2) in melt that has been quenched to glass. Volatile measurements on obsidian pyroclasts from Mono Craters, California, have been central to the development of open- versus closed-system and equilibrium versus non-equilibrium degassing models, and these models have been applied to the interpretation of volatile data from volcanic centers worldwide. Even for the well-studied Mono Craters system, however, there are several different degassing models that are compatible with existing data, and the origin of the vesicle-poor obsidian pyroclasts (upon which the degassing models have been built) remains ambiguous. To better establish the link between the volatiles in the pyroclasts and volcanic eruption processes, we combine textural analysis with area maps of CO2 and H2O. We show that obsidian pyroclasts are heterogeneous with respect to dissolved CO2 and H2O, and that many clasts have multiple textural and chemical domains that are sutured together. The observations suggest that clasts are assembled from non-equilibrated juvenile melt and ash during repeated melt fracturing and healing, ash sintering, and shearing along conduit margins. Melt fracturing promotes gas extraction from magma, whereas healing promotes gas resorption and glass densification. Some of the clasts have bands or patches of elevated CO2 associated with cuspate vesicles, which are evidence for CO2-rich vapor fluxing through the magmatic system. Collectively, the data support a model of open-system, non-equilibrium degassing with intermittent regassing caused by increases in pressure and exposure to different vapor compositions.

The role of superheating in the formation of Glass Mountain obsidians (Long Valley, CA) inferred through crystallization of sanidine

NASA Astrophysics Data System (ADS)

Waters, Laura E.; Andrews, Benjamin J.

2016-10-01

The Glass Mountain obsidians (Long Valley, CA) are crystal poor (<8 vol%) and highly evolved (high SiO2, low Sr), and therefore, their formation required extremely efficient separation of melts from a crystal-rich source. A petrologic and experimental investigation of the mineral phases in Glass Mountain lavas identifies conditions under which phenocrysts grew and the driving mechanism for crystallization, which places constraints on the possible processes that generated the obsidians. The obsidian in this study (GM-11) is saturated in nine phases (sanidine + quartz + plagioclase + titanomagnetite + ilmenite + zircon + apatite + allanite + biotite), and results of high-resolution SEM compositional mapping and electron microprobe analysis reveal that individual sanidine crystals are normally zoned and span a range of compositions (Or40-78). Sanidines have a "granophyric" texture, characterized by intergrowths of quartz and sanidine. Mineral phases in the natural sample are compared to H2O-saturated phase equilibrium experiments conducted in cold-seal pressure vessels, over a range of conditions (700-850 °C; 75-225 MPa), and all are found to be plausible phenocrysts. Comparison of sanidine compositions from the natural sample with those grown in phase equilibrium experiments demonstrates that sanidine in the natural sample occurs in a reduced abundance. Further comparison with phase equilibrium experiments suggests that sanidine compositions track progressive loss of dissolved melt water (±cooling), suggesting that crystallization in the natural obsidian was driven predominantly by degassing resulting from decompression. It is paradoxical that an effusively (slowly) erupted lava should contain multiple phenocryst phases, including sanidine crystals that span a range of compositions with granophyric textures, and yet remain so crystal poor. To resolve this paradox, it is necessary that the solidification mechanism (degassing or cooling) that produced the sanidine

Obsidian hydration dating of volcanic events

USGS Publications Warehouse

Friedman, I.; Obradovich, J.

1981-01-01

Obsidian hydration dating of volcanic events had been compared with ages of the same events determined by the 14C and KAr methods at several localities. The localities, ranging in age from 1200 to over 1 million yr, include Newberry Craters, Oregon; Coso Hot Springs, California; Salton Sea, California; Yellowstone National Park, Wyoming; and Mineral Range, Utah. In most cases the agreement is quite good. A number of factors including volcanic glass composition and exposuretemperature history must be known in order to relate hydration thickness to age. The effect of composition can be determined from chemical analysis or the refractive index of the glass. Exposure-temperature history requires a number of considerations enumerated in this paper. ?? 1981.

The earliest long-distance obsidian transport: Evidence from the ∼200 ka Middle Stone Age Sibilo School Road Site, Baringo, Kenya.

PubMed

Blegen, Nick

2017-02-01

This study presents the earliest evidence of long-distance obsidian transport at the ∼200 ka Sibilo School Road Site (SSRS), an early Middle Stone Age site in the Kapthurin Formation, Kenya. The later Middle Pleistocene of East Africa (130-400 ka) spans significant and interrelated behavioral and biological changes in human evolution including the first appearance of Homo sapiens. Despite the importance of the later Middle Pleistocene, there are relatively few archaeological sites in well-dated contexts (n < 10) that document hominin behavior from this time period. In particular, geochemically informed evidence of long-distance obsidian transport, important for investigating expansion of intergroup interactions in hominin evolution, is rare from the Middle Pleistocene record of Africa. The SSRS offers a unique contribution to this small but growing dataset. Tephrostratigraphic analysis of tuffs encasing the SSRS provides a minimum age of ∼200 ka for the site. Levallois points and methods of core preparation demonstrate characteristic Middle Stone Age lithic technologies present at the SSRS. A significant portion (43%) of the lithic assemblage is obsidian. The SSRS obsidian comes from three different sources located at distances of 25 km, 140 km and 166 km from the site. The majority of obsidian derives from the farthest source, 166 km to the south of the site. The SSRS thus provides important new evidence that long-distance raw material transport, and the expansion of hominin intergroup interactions that this entails, was a significant feature of hominin behavior ∼200 ka, the time of the first appearance of H. sapiens, and ∼150,000 years before similar behaviors were previously documented in the region. Copyright © 2016 Elsevier Ltd. All rights reserved.

Magnetic properties of a new obsidian source, west Antelope Creek, Grant County, New Mexico

NASA Astrophysics Data System (ADS)

Sternberg, R. S.; Samuels, R.; Feinberg, J. M.; Shackley, M. S.

2013-12-01

This work is part of a Keck Geology Consortium project on characterizing obsidian sources in New Mexico using magnetic and geochemical properties. We collected over 3,000 samples, many of which were georeferenced, from 10 obsidian sources at three locales - Mule creek, Mt. Taylor, and Valles Caldera. One of the Mule Creek sources, herein called the west Antelope Creek (wAC) source, was previously unknown. The 143 samples collected at this source covered about 1 km2, but were not individually georeferenced. We plan to characterize the magnetic and chemical properties of this source to see if it is distinguishable from other nearby sources and useful for provenancing archaeological obsidians. Initial measurements on 34 specimens from 20 samples show NRM values range from 1-80 Am2/kg, and low-field susceptibilities range from 1.2-96 x 10-8 mass specific SI units. When there were two specimens from the same sample, results were in good agreement. The measurements define a rather broad field in NRM-susceptibility space compared to other Southwestern sources examined to date, and a considerably larger field than from the nearby Antelope Creek (AC) source. The previously measured NRM and susceptibility values from AC are all in the high end on both dimensions of the wAC field, so that these fields overlap but in many cases could be distinguished.

Testing complex networks of interaction at the onset of the Near Eastern Neolithic using modelling of obsidian exchange

PubMed Central

Ibáñez, Juan José; Ortega, David; Campos, Daniel; Khalidi, Lamya; Méndez, Vicenç

2015-01-01

In this paper, we explore the conditions that led to the origins and development of the Near Eastern Neolithic using mathematical modelling of obsidian exchange. The analysis presented expands on previous research, which established that the down-the-line model could not explain long-distance obsidian distribution across the Near East during this period. Drawing from outcomes of new simulations and their comparison with archaeological data, we provide results that illuminate the presence of complex networks of interaction among the earliest farming societies. We explore a network prototype of obsidian exchange with distant links which replicates the long-distance movement of ideas, goods and people during the Early Neolithic. Our results support the idea that during the first (Pre-Pottery Neolithic A) and second (Pre-Pottery Neolithic B) phases of the Early Neolithic, the complexity of obsidian exchange networks gradually increased. We propose then a refined model (the optimized distant link model) whereby long-distance exchange was largely operated by certain interconnected villages, resulting in the appearance of a relatively homogeneous Neolithic cultural sphere. We hypothesize that the appearance of complex interaction and exchange networks reduced risks of isolation caused by restricted mobility as groups settled and argue that these networks partially triggered and were crucial for the success of the Neolithic Revolution. Communities became highly dynamic through the sharing of experiences and objects, while the networks that developed acted as a repository of innovations, limiting the risk of involution. PMID:25948614

Obsidian hydration rate for the klamath basin of california and Oregon.

PubMed

Johnson, L

1969-09-26

A hydration rate for obsidian of 3.5(4) microns squared per 1000 radio-carbon years has been established at the Nightfire Island archeological site in northern California and provides a means to date other prehistoric Klamath Basin sites. The new rate follows the form of the hydration equation formulated by Friedman and helps to refute claims made for other hydration equations.

Testing complex networks of interaction at the onset of the Near Eastern Neolithic using modelling of obsidian exchange.

PubMed

Ibáñez, Juan José; Ortega, David; Campos, Daniel; Khalidi, Lamya; Méndez, Vicenç

2015-06-06

In this paper, we explore the conditions that led to the origins and development of the Near Eastern Neolithic using mathematical modelling of obsidian exchange. The analysis presented expands on previous research, which established that the down-the-line model could not explain long-distance obsidian distribution across the Near East during this period. Drawing from outcomes of new simulations and their comparison with archaeological data, we provide results that illuminate the presence of complex networks of interaction among the earliest farming societies. We explore a network prototype of obsidian exchange with distant links which replicates the long-distance movement of ideas, goods and people during the Early Neolithic. Our results support the idea that during the first (Pre-Pottery Neolithic A) and second (Pre-Pottery Neolithic B) phases of the Early Neolithic, the complexity of obsidian exchange networks gradually increased. We propose then a refined model (the optimized distant link model) whereby long-distance exchange was largely operated by certain interconnected villages, resulting in the appearance of a relatively homogeneous Neolithic cultural sphere. We hypothesize that the appearance of complex interaction and exchange networks reduced risks of isolation caused by restricted mobility as groups settled and argue that these networks partially triggered and were crucial for the success of the Neolithic Revolution. Communities became highly dynamic through the sharing of experiences and objects, while the networks that developed acted as a repository of innovations, limiting the risk of involution. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

Understanding bias in provenance studies

NASA Astrophysics Data System (ADS)

Garzanti, Eduardo; Andò, Sergio; Malusà, Marco; Vezzoli, Giovanni

2010-05-01

Innumerable pieces of information are stored in the sedimentary archive. Each single sediment layer contains billions of detrital grains, and every grain preserves imprints of its geological story. If we learn to read, compare, and combine these messages properly, through a deeper understanding of physical and chemical processes that modify sediment composition during the sedimentary cycle, provenance analysis may eventually enable us to reconstruct more accurately the geological processes that shaped the Earth's crust in the past. Interpreting detrital modes is not straightforward because provenance signals issued from source rocks become progressively blurred by multiple noises in the sedimentary environment ("environmental bias"; Komar, 2007), and finally during post-depositional history ("diagenetic bias"; Morton and Hallsworth, 2007). During transport and deposition, detrital minerals are segregated in different size fractions and environments according to their size, density and shape (Rubey, 1933; Garzanti et al., 2008). Heavy-mineral concentration can increase by an order of magnitude due to selective-entrainment effects, with potentially overwhelming impact on chemical composition and provenance estimates based on detrital-geochronology data (Garzanti et al., 2009). Conversely, heavy-mineral concentration is typically reduced by an order of magnitude in Alpine and Himalayan foreland-basin deposits older than the Pleistocene (Garzanti and Andò, 2007). Extensive chemical dissolution can occur even prior to deposition during weathering in hot humid climates (Velbel, 2007). Primary provenance signals can be isolated and assessed by studying first modern sediments in hyperarid settings (i.e., free from diagenetic and weathering bias). Next, weathering, hydraulic-sorting, and diagenetic effects can be singled out by analysing sediments of similar provenance produced in contrasting climatic conditions, sediments transported in diverse modes and deposited in

Using obsidian transfer distances to explore social network maintenance in late Pleistocene hunter-gatherers.

PubMed

Pearce, Eiluned; Moutsiou, Theodora

2014-12-01

Social behaviour is notoriously difficult to study archaeologically and it is unclear how large the networks of prehistoric humans were, or how they remained connected. Maintaining social cohesion was crucial for early humans because social networks facilitate cooperation and are imperative for survival and reproduction. Recent hunter-gatherer social organisation typically comprises a number of nested layers, ranging from the nuclear family through to the ~1500-strong ethnolinguistic tribe. Here we compare maximum obsidian transfer distances from the late Pleistocene with ethnographic data on the size of the geographic areas associated with each of these social grouping layers in recent hunter-gatherers. The closest match between the two is taken to indicate the maximum social layer within which contact could be sustained by Pleistocene hominins. Within both the (sub)tropical African and Subarctic biomes, the maximum obsidian transfer distances for Pleistocene modern humans (~200km and ~400km respectively) correspond to the geographic ranges of the outermost tribal layer in recent hunter-gatherers. This suggests that modern humans could potentially sustain the cohesion of their entire tribe at all latitudes, even though networks are more dispersed nearer the poles. Neanderthal obsidian transfer distances (300km) indicate that although Neanderthal home ranges are larger than those of low latitude hominins, Neanderthals travelled shorter distances than modern humans living at the same high latitudes. We argue that, like modern humans, Neanderthals could have maintained tribal cohesion, but that their tribes were substantially smaller than those of contemporary modern humans living in similar environments. The greater time taken to traverse the larger modern human tribal ranges may have limited the frequency of their face-to-face interactions and thus necessitated additional mechanisms to ensure network connectivity, such as the exchange of symbolic artefacts

Using obsidian transfer distances to explore social network maintenance in late Pleistocene hunter-gatherers

PubMed Central

Pearce, Eiluned; Moutsiou, Theodora

2014-01-01

Social behaviour is notoriously difficult to study archaeologically and it is unclear how large the networks of prehistoric humans were, or how they remained connected. Maintaining social cohesion was crucial for early humans because social networks facilitate cooperation and are imperative for survival and reproduction. Recent hunter-gatherer social organisation typically comprises a number of nested layers, ranging from the nuclear family through to the ~1500-strong ethnolinguistic tribe. Here we compare maximum obsidian transfer distances from the late Pleistocene with ethnographic data on the size of the geographic areas associated with each of these social grouping layers in recent hunter-gatherers. The closest match between the two is taken to indicate the maximum social layer within which contact could be sustained by Pleistocene hominins. Within both the (sub)tropical African and Subarctic biomes, the maximum obsidian transfer distances for Pleistocene modern humans (~200km and ~400km respectively) correspond to the geographic ranges of the outermost tribal layer in recent hunter-gatherers. This suggests that modern humans could potentially sustain the cohesion of their entire tribe at all latitudes, even though networks are more dispersed nearer the poles. Neanderthal obsidian transfer distances (300km) indicate that although Neanderthal home ranges are larger than those of low latitude hominins, Neanderthals travelled shorter distances than modern humans living at the same high latitudes. We argue that, like modern humans, Neanderthals could have maintained tribal cohesion, but that their tribes were substantially smaller than those of contemporary modern humans living in similar environments. The greater time taken to traverse the larger modern human tribal ranges may have limited the frequency of their face-to-face interactions and thus necessitated additional mechanisms to ensure network connectivity, such as the exchange of symbolic artefacts

Juvenile pumice and pyroclastic obsidian reveal the eruptive conditions necessary for the stability of Plinian eruption of rhyolitic magma

NASA Astrophysics Data System (ADS)

Giachetti, T.; Shea, T.; Gonnermann, H. M.; McCann, K. A.; Hoxsie, E. C.

2016-12-01

Significant explosive activity generally precedes or coexists with the large effusion of rhyolitic lava (e.g., Mono Craters; Medicine Lake Volcano; Newberry; Chaitén; Cordón Caulle). Such explosive-to-effusive transitions and, ultimately, cessation of activity are commonly explained by the overall waning magma chamber pressure accompanying magma withdrawal, albeit modulated by magma outgassing. The tephra deposits of such explosive-to-effusive eruptions record the character of the transition - abrupt or gradual - as well as potential changes in eruptive conditions, such as magma composition, volatiles content, mass discharge rate, conduit size, magma outgassing. Results will be presented from a detailed study of both the gas-rich (pumice) and gas-poor (obsidian) juvenile pyroclasts produced during the Plinian phase of the 1060 CE Glass Mountain eruption of Medicine Lake Volcano, California. In the proximal deposits, a multitude of pumice-rich sections separated by layers rich in dense clasts suggests a pulsatory behavior of the explosive phase. Density measurements on 2,600 pumices show that the intermediate, most voluminous deposits have a near constant median porosity of 65%. However, rapid increase in porosity to 75-80% is observed at both the bottom and the top of the fallout deposits, suggestive of rapid variations in magma degassing. In contrast, a water content of pyroclastic obsidians of approximately 0.6 wt% does remain constant throughout the eruption, suggesting that the pyroclastic obsidians degassed up to a constant pressure of a few megapascals. Numerical modeling of eruptive magma ascent and degassing is used to provide constraints on eruption conditions.

An abrupt change in the magmatic source of rhyolite volcanism in Long Valley, CA recorded by pre-eruptive oxygen fugacities of the Early Rhyolites (Obsidians): evidence of transition from subduction-modified lithosphere to asthenosphere

NASA Astrophysics Data System (ADS)

Waters, L.; Lange, R. A.

2016-12-01

Detailed mapping of the Long Valley (CA) region (Hildreth, 2004) reveals that the eruption of the Late Bishop Tuff (LBT) is followed by eruption of the Early Rhyolites (ER), which are obsidian lavas. The obsidians are paradoxical, as they erupted effusively, contain multiple phases (some of which vary in composition), and yet, they are crystal-poor. The obsidians are saturated in ≥7 phases (plagioclase + orthopyroxene + ilmenite + titanomagnetite + biotite + apatite + zircon ± pyrrhotite). Plagioclase and orthopyroxene crystals have rounded edges accompanying euhedral margins, and large (>200µm) ilmenites have swallow-tail growth. Plagioclase and orthopyroxene span a compositional range between An20-45 and En43-58, respectively, and phase equilibrium experiments confirm that these are phenocrysts, despite their complex textures. Pre-eruptive temperatures and fO2 values are calculated applying Fe-Ti oxide thermometry to all possible oxide pairs and range from 724-861°C and ΔNNO -0.3 to -0.9, respectively. Application of the plagioclase hygrometer to crystals in ER obsidians reveals pre-eruptive H2O contents of 3-5wt%. We propose that mineral compositions and textures within the ER obsidians record rapid growth due to degassing-induced crystallization of a superheated melt. Superheating is required to explain the origin of the ER lavas as it eliminates nucleation sites, requiring crystallization to occur on nuclei that form during degassing enabling effusive eruption of crystal-poor lavas. The ER obsidians differ from the LBT in their crystallinities (<5% vs. >12%), phenocryst phases (e.g., sanidine is absent in ER obsidians), plagioclase compositions (An20-45 vs. An20-29), and fO2 values (ΔNNO < -0.3 vs. +0.5), which suggests that the ER lavas may not be derived from the LBT reservoir. Rather, we hypothesize that the ER phenocryst assemblage, reduced fO2 values, and requirement for superheating can be explained if the obsidians formed as partial melts of a

Advanced Signal Processing Analysis of Laser-Induced Breakdown Spectroscopy Data for the Discrimination of Obsidian Sources

DTIC Science & Technology

2012-02-09

different sources [12,13], but the analytical techniques needed for such analysis (XRD, INAA , & ICP-MS) are time consuming and require expensive...partial least-squares discriminant analysis (PLSDA) that used the SIMPLS solving method [33]. In the experi- ment design, a leave-one-sample-out (LOSO) para...REPORT Advanced signal processing analysis of laser-induced breakdown spectroscopy data for the discrimination of obsidian sources 14. ABSTRACT 16

Making Sense of 'Big Data' in Provenance Studies

NASA Astrophysics Data System (ADS)

Vermeesch, P.

2014-12-01

Huge online databases can be 'mined' to reveal previously hidden trends and relationships in society. One could argue that sedimentary geology has entered a similar era of 'Big Data', as modern provenance studies routinely apply multiple proxies to dozens of samples. Just like the Internet, sedimentary geology now requires specialised statistical tools to interpret such large datasets. These can be organised on three levels of progressively higher order:A single sample: The most effective way to reveal the provenance information contained in a representative sample of detrital zircon U-Pb ages are probability density estimators such as histograms and kernel density estimates. The widely popular 'probability density plots' implemented in IsoPlot and AgeDisplay compound analytical uncertainty with geological scatter and are therefore invalid.Several samples: Multi-panel diagrams comprising many detrital age distributions or compositional pie charts quickly become unwieldy and uninterpretable. For example, if there are N samples in a study, then the number of pairwise comparisons between samples increases quadratically as N(N-1)/2. This is simply too much information for the human eye to process. To solve this problem, it is necessary to (a) express the 'distance' between two samples as a simple scalar and (b) combine all N(N-1)/2 such values in a single two-dimensional 'map', grouping similar and pulling apart dissimilar samples. This can be easily achieved using simple statistics-based dissimilarity measures and a standard statistical method called Multidimensional Scaling (MDS).Several methods: Suppose that we use four provenance proxies: bulk petrography, chemistry, heavy minerals and detrital geochronology. This will result in four MDS maps, each of which likely show slightly different trends and patterns. To deal with such cases, it may be useful to use a related technique called 'three way multidimensional scaling'. This results in two graphical outputs: an MDS

From pumice to obsidian: eruptive behaviors that produce tephra-flow dyads. II- The 114ka trachyte eruption at Pu'u Wa'awa'a (Hawai'i).

NASA Astrophysics Data System (ADS)

Shea, T.; Leonhardi, T. C.; Giachetti, T.; Larsen, J. F.; Lindoo, A. N.

2014-12-01

Associations of tephra and lava flow/domes produced by eruptions involving evolved magmas are a common occurrence in various types of volcanic settings (e.g. Pu'u Wa'awa'a ~114ka, Hawaii; South Mono ~AD625, California; Newberry Big Obsidian flow ~AD700, Oregon; Big Glass Mountain ~AD1100, California; Inyo ~AD1350, California, Chaitén AD2008-2009, Chile; Cordón Caulle AD2011-2012, Chile), ejecting up to a few cubic km of material (tephra+flow/dome). Most, if not all, of these eruptions have in common the paradoxical coexistence of (1) eruptive styles which are inferred to be sustained in nature (subplinian and plinian), with (2) a pulsatory behavior displayed by the resulting fall deposits, and (3) the coeval ejection of vesicular tephra and pyroclastic obsidian. Through two case studies, we explore this apparent set of paradoxes, and their significance in understanding transitions from explosive to effusive behavior. In this second case study (also cf. Shea et al., same session), we present new field, textural and geochemical data pertaining to the 114ka Pu'u Wa'awa'a trachyte eruption in Hawai'i. This large volume (>5 km3) event produced both a tephra cone (~1.6 km in diameter) and a thick (>250 m) lava flow, which have been largely covered by the more recent basaltic Mauna Loa and Hualalai lava flows. The trachyte tephra contains juvenile material displaying a large textural variety (pumice, scoria, obsidian, microcrystalline trachyte and banded-clasts), which can be linked with the extent of degassing and the formation of feldspar microlites. Notably, the abundance of microlites can be used to reconstruct an ascent and devolatilization history that accounts for all the seemingly contradictory observations.

Scientific Reproducibility in Biomedical Research: Provenance Metadata Ontology for Semantic Annotation of Study Description.

PubMed

Sahoo, Satya S; Valdez, Joshua; Rueschman, Michael

2016-01-01

Scientific reproducibility is key to scientific progress as it allows the research community to build on validated results, protect patients from potentially harmful trial drugs derived from incorrect results, and reduce wastage of valuable resources. The National Institutes of Health (NIH) recently published a systematic guideline titled "Rigor and Reproducibility " for supporting reproducible research studies, which has also been accepted by several scientific journals. These journals will require published articles to conform to these new guidelines. Provenance metadata describes the history or origin of data and it has been long used in computer science to capture metadata information for ensuring data quality and supporting scientific reproducibility. In this paper, we describe the development of Provenance for Clinical and healthcare Research (ProvCaRe) framework together with a provenance ontology to support scientific reproducibility by formally modeling a core set of data elements representing details of research study. We extend the PROV Ontology (PROV-O), which has been recommended as the provenance representation model by World Wide Web Consortium (W3C), to represent both: (a) data provenance, and (b) process provenance. We use 124 study variables from 6 clinical research studies from the National Sleep Research Resource (NSRR) to evaluate the coverage of the provenance ontology. NSRR is the largest repository of NIH-funded sleep datasets with 50,000 studies from 36,000 participants. The provenance ontology reuses ontology concepts from existing biomedical ontologies, for example the Systematized Nomenclature of Medicine Clinical Terms (SNOMED CT), to model the provenance information of research studies. The ProvCaRe framework is being developed as part of the Big Data to Knowledge (BD2K) data provenance project.

Scientific Reproducibility in Biomedical Research: Provenance Metadata Ontology for Semantic Annotation of Study Description

PubMed Central

Sahoo, Satya S.; Valdez, Joshua; Rueschman, Michael

2016-01-01

Scientific reproducibility is key to scientific progress as it allows the research community to build on validated results, protect patients from potentially harmful trial drugs derived from incorrect results, and reduce wastage of valuable resources. The National Institutes of Health (NIH) recently published a systematic guideline titled “Rigor and Reproducibility “ for supporting reproducible research studies, which has also been accepted by several scientific journals. These journals will require published articles to conform to these new guidelines. Provenance metadata describes the history or origin of data and it has been long used in computer science to capture metadata information for ensuring data quality and supporting scientific reproducibility. In this paper, we describe the development of Provenance for Clinical and healthcare Research (ProvCaRe) framework together with a provenance ontology to support scientific reproducibility by formally modeling a core set of data elements representing details of research study. We extend the PROV Ontology (PROV-O), which has been recommended as the provenance representation model by World Wide Web Consortium (W3C), to represent both: (a) data provenance, and (b) process provenance. We use 124 study variables from 6 clinical research studies from the National Sleep Research Resource (NSRR) to evaluate the coverage of the provenance ontology. NSRR is the largest repository of NIH-funded sleep datasets with 50,000 studies from 36,000 participants. The provenance ontology reuses ontology concepts from existing biomedical ontologies, for example the Systematized Nomenclature of Medicine Clinical Terms (SNOMED CT), to model the provenance information of research studies. The ProvCaRe framework is being developed as part of the Big Data to Knowledge (BD2K) data provenance project. PMID:28269904

From Provenance Standards and Tools to Queries and Actionable Provenance

NASA Astrophysics Data System (ADS)

Ludaescher, B.

2017-12-01

The W3C PROV standard provides a minimal core for sharing retrospective provenance information for scientific workflows and scripts. PROV extensions such as DataONE's ProvONE model are necessary for linking runtime observables in retrospective provenance records with conceptual-level prospective provenance information, i.e., workflow (or dataflow) graphs. Runtime provenance recorders, such as DataONE's RunManager for R, or noWorkflow for Python capture retrospective provenance automatically. YesWorkflow (YW) is a toolkit that allows researchers to declare high-level prospective provenance models of scripts via simple inline comments (YW-annotations), revealing the computational modules and dataflow dependencies in the script. By combining and linking both forms of provenance, important queries and use cases can be supported that neither provenance model can afford on its own. We present existing and emerging provenance tools developed for the DataONE and SKOPE (Synthesizing Knowledge of Past Environments) projects. We show how the different tools can be used individually and in combination to model, capture, share, query, and visualize provenance information. We also present challenges and opportunities for making provenance information more immediately actionable for the researchers who create it in the first place. We argue that such a shift towards "provenance-for-self" is necessary to accelerate the creation, sharing, and use of provenance in support of transparent, reproducible computational and data science.

PIXE study on the provenance of Chinese ancient porcelain

NASA Astrophysics Data System (ADS)

Zhu, D.; Cheng, H. S.; Lin, J. W.; Yang, F. J.

2006-08-01

This paper reports the PIXE study on the provenance of Chinese ancient porcelain made in 7-10th century. The chemical compositions of Jun celadon samples made at Juntai, Linru and Hunyuan kilns, the white-glazed porcelain samples made at Ding, Huangye and Dangyangyu kilns, and the Ru celadon samples made at Qiangliang Temple were measured by external-beam PIXE, and the factor analysis was applied for identifying their provenances. Experimental results show that the porcelain products made at different kilns can be distinguished according to the compositional differences measured by PIXE.

Measuring effusion rates of obsidian lava flows by means of satellite thermal data

NASA Astrophysics Data System (ADS)

Coppola, D.; Laiolo, M.; Franchi, A.; Massimetti, F.; Cigolini, C.; Lara, L. E.

2017-11-01

Space-based thermal data are increasingly used for monitoring effusive eruptions, especially for calculating lava discharge rates and forecasting hazards related to basaltic lava flows. The application of this methodology to silicic, more viscous lava bodies (such as obsidian lava flows) is much less frequent, with only few examples documented in the last decades. The 2011-2012 eruption of Cordón Caulle volcano (Chile) produced a voluminous obsidian lava flow ( 0.6 km3) and offers an exceptional opportunity to analyze the relationship between heat and volumetric flux for such type of viscous lava bodies. Based on a retrospective analysis of MODIS infrared data (MIROVA system), we found that the energy radiated by the active lava flow is robustly correlated with the erupted lava volume, measured independently. We found that after a transient time of about 15 days, the coefficient of proportionality between radiant and volumetric flux becomes almost steady, and stabilizes around a value of 5 × 106 J m- 3. This coefficient (i.e. radiant density) is much lower than those found for basalts ( 1 × 108 J m- 3) and likely reflects the appropriate spreading and cooling properties of the highly-insulated, viscous flows. The effusion rates trend inferred from MODIS data correlates well with the tremor amplitude and with the plume elevation recorded throughout the eruption, thus suggesting a link between the effusive and the coeval explosive activity. Modelling of the eruptive trend indicates that the Cordón Caulle eruption occurred in two stages, either incompletely draining a single magma reservoir or more probably tapping multiple interconnected magmatic compartments.

Characterizing Provenance in Visualization and Data Analysis: An Organizational Framework of Provenance Types and Purposes.

PubMed

Ragan, Eric D; Endert, Alex; Sanyal, Jibonananda; Chen, Jian

2016-01-01

While the primary goal of visual analytics research is to improve the quality of insights and findings, a substantial amount of research in provenance has focused on the history of changes and advances throughout the analysis process. The term, provenance, has been used in a variety of ways to describe different types of records and histories related to visualization. The existing body of provenance research has grown to a point where the consolidation of design knowledge requires cross-referencing a variety of projects and studies spanning multiple domain areas. We present an organizational framework of the different types of provenance information and purposes for why they are desired in the field of visual analytics. Our organization is intended to serve as a framework to help researchers specify types of provenance and coordinate design knowledge across projects. We also discuss the relationships between these factors and the methods used to capture provenance information. In addition, our organization can be used to guide the selection of evaluation methodology and the comparison of study outcomes in provenance research.

Characterizing Provenance in Visualization and Data Analysis: An Organizational Framework of Provenance Types and Purposes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ragan, Eric; Alex, Endert; Sanyal, Jibonananda

While the primary goal of visual analytics research is to improve the quality of insights and findings, a substantial amount of research in provenance has focused on the history of changes and advances throughout the analysis process. The term, provenance, has been used in a variety of ways to describe different types of records and histories related to visualization. The existing body of provenance research has grown to a point where the consolidation of design knowledge requires cross-referencing a variety of projects and studies spanning multiple domain areas. We present an organizational framework of the different types of provenance informationmore » and purposes for why they are desired in the field of visual analytics. Our organization is intended to serve as a framework to help researchers specify types of provenance and coordinate design knowledge across projects. We also discuss the relationships between these factors and the methods used to capture provenance information. In addition, our organization can be used to guide the selection of evaluation methodology and the comparison of study outcomes in provenance research« less

Characterizing Provenance in Visualization and Data Analysis: An Organizational Framework of Provenance Types and Purposes

DOE PAGES

Ragan, Eric; Alex, Endert; Sanyal, Jibonananda; ...

2016-01-01

While the primary goal of visual analytics research is to improve the quality of insights and findings, a substantial amount of research in provenance has focused on the history of changes and advances throughout the analysis process. The term, provenance, has been used in a variety of ways to describe different types of records and histories related to visualization. The existing body of provenance research has grown to a point where the consolidation of design knowledge requires cross-referencing a variety of projects and studies spanning multiple domain areas. We present an organizational framework of the different types of provenance informationmore » and purposes for why they are desired in the field of visual analytics. Our organization is intended to serve as a framework to help researchers specify types of provenance and coordinate design knowledge across projects. We also discuss the relationships between these factors and the methods used to capture provenance information. In addition, our organization can be used to guide the selection of evaluation methodology and the comparison of study outcomes in provenance research« less

Sugar maple provenance study: West Virginia outplanting - 10-year results

Treesearch

G. W. Wendel; W. J. Gabriel

1980-01-01

After 10 years, survival of sugar maple (Acer saccharum Marsh.) provenances outplanted in West Virginia did not differ significantly. Total height, height growth and dbh measurements were significantly different among provenances. Fifty percent of the trees had major forks below 9.0 feet. Thirty-eight percent of the trees had no forks but 71 percent...

Active Provenance in Data-intensive Research

NASA Astrophysics Data System (ADS)

Spinuso, Alessandro; Mihajlovski, Andrej; Filgueira, Rosa; Atkinson, Malcolm

2017-04-01

management will be also discussed, enabling provenance-driven operations at runtime, regardless of the enactment technologies and connectivity impediments. We proposes a framework based on concepts such as provenance clusters and provenance sensors, envisaging new potential for exploiting large quantities of provenance traces at runtime. Finally the work will also introduce how the underlying provenance model can be explored with big-data visualization techniques, aiming at producing comprehensive and interactive views on top of large and heterogeneous provenance data. We will demonstrate the adoption of alternative visualisation methods, from detailed and localised interactive graphs to radial-views, serving different purposes and expertise. Combining provenance types, selective rules, extensible metadata with reactive clustering opens a new and more versatile role of the lineage information in the research life-cycle, thanks to its improved usability. The flexible profiling of the proposed framework offers aid to the human analysis of the process, with the support of advanced and intuitive interactive graphical tools. The Active provenance methods are discussed in the context of a real implementation for a data-intensive library (dispel4py) and its adoption within use cases for computational seismology, climate studies and generic correlation analysis.

Empowering Provenance in Data Integration

NASA Astrophysics Data System (ADS)

Kondylakis, Haridimos; Doerr, Martin; Plexousakis, Dimitris

The provenance of data has recently been recognized as central to the trust one places in data. This paper presents a novel framework in order to empower provenance in a mediator based data integration system. We use a simple mapping language for mapping schema constructs, between an ontology and relational sources, capable to carry provenance information. This language extends the traditional data exchange setting by translating our mapping specifications into source-to-target tuple generating dependencies (s-t tgds). Then we define formally the provenance information we want to retrieve i.e. annotation, source and tuple provenance. We provide three algorithms to retrieve provenance information using information stored on the mappings and the sources. We show the feasibility of our solution and the advantages of our framework.

Knowledge Provenance in Semantic Wikis

NASA Astrophysics Data System (ADS)

Ding, L.; Bao, J.; McGuinness, D. L.

2008-12-01

Collaborative online environments with a technical Wiki infrastructure are becoming more widespread. One of the strengths of a Wiki environment is that it is relatively easy for numerous users to contribute original content and modify existing content (potentially originally generated by others). As more users begin to depend on informational content that is evolving by Wiki communities, it becomes more important to track the provenance of the information. Semantic Wikis expand upon traditional Wiki environments by adding some computationally understandable encodings of some of the terms and relationships in Wikis. We have developed a semantic Wiki environment that expands a semantic Wiki with provenance markup. Provenance of original contributions as well as modifications is encoded using the provenance markup component of the Proof Markup Language. The Wiki environment provides the provenance markup automatically, thus users are not required to make specific encodings of author, contribution date, and modification trail. Further, our Wiki environment includes a search component that understands the provenance primitives and thus can be used to provide a provenance-aware search facility. We will describe the knowledge provenance infrastructure of our Semantic Wiki and show how it is being used as the foundation of our group web site as well as a number of project web sites.

Proven Weight Loss Methods

MedlinePlus

Fact Sheet Proven Weight Loss Methods What can weight loss do for you? Losing weight can improve your health in a number of ways. It can lower ... at www.hormone.org/Spanish . Proven Weight Loss Methods Fact Sheet www.hormone.org

Scots pine in eastern Nebraska: A provenance study

Treesearch

Ralph A. Read

1971-01-01

Seedling progenies of 36 rangewide provenances of Scots pine (Pinus sylvestris) were established in a field test in eastern Nebraska. Results in growth and other characteristics after 8 years reveal that (1) southern origins bordering the Mediterranean grow slowly to moderately fast and remain dark green in winter, (2) central European origins grow very fast and turn...

Scientific Workflows + Provenance = Better (Meta-)Data Management

NASA Astrophysics Data System (ADS)

Ludaescher, B.; Cuevas-Vicenttín, V.; Missier, P.; Dey, S.; Kianmajd, P.; Wei, Y.; Koop, D.; Chirigati, F.; Altintas, I.; Belhajjame, K.; Bowers, S.

2013-12-01

The origin and processing history of an artifact is known as its provenance. Data provenance is an important form of metadata that explains how a particular data product came about, e.g., how and when it was derived in a computational process, which parameter settings and input data were used, etc. Provenance information provides transparency and helps to explain and interpret data products. Other common uses and applications of provenance include quality control, data curation, result debugging, and more generally, 'reproducible science'. Scientific workflow systems (e.g. Kepler, Taverna, VisTrails, and others) provide controlled environments for developing computational pipelines with built-in provenance support. Workflow results can then be explained in terms of workflow steps, parameter settings, input data, etc. using provenance that is automatically captured by the system. Scientific workflows themselves provide a user-friendly abstraction of the computational process and are thus a form of ('prospective') provenance in their own right. The full potential of provenance information is realized when combining workflow-level information (prospective provenance) with trace-level information (retrospective provenance). To this end, the DataONE Provenance Working Group (ProvWG) has developed an extension of the W3C PROV standard, called D-PROV. Whereas PROV provides a 'least common denominator' for exchanging and integrating provenance information, D-PROV adds new 'observables' that described workflow-level information (e.g., the functional steps in a pipeline), as well as workflow-specific trace-level information ( timestamps for each workflow step executed, the inputs and outputs used, etc.) Using examples, we will demonstrate how the combination of prospective and retrospective provenance provides added value in managing scientific data. The DataONE ProvWG is also developing tools based on D-PROV that allow scientists to get more mileage from provenance metadata

Strontium isotopes in otoliths of a non-migratory fish (slimy sculpin): Implications for provenance studies

USGS Publications Warehouse

Brennan, Sean R.; Fernandez, Diego P.; Zimmerman, Christian E.; Cerling, Thure E.; Brown, Randy J.; Wooller, Matthew J.

2015-01-01

Heterogeneity in 87Sr/86Sr ratios of river-dissolved strontium (Sr) across geologically diverse environments provides a useful tool for investigating provenance, connectivity and movement patterns of various organisms and materials. Evaluation of site-specific 87Sr/86Sr temporal variability throughout study regions is a prerequisite for provenance research, but the dynamics driving temporal variability are generally system-dependent and not accurately predictable. We used the time-keeping properties of otoliths from non-migratory slimy sculpin (Cottus cognatus) to evaluate multi-scale 87Sr/86Sr temporal variability of river waters throughout the Nushagak River, a large (34,700 km2) remote watershed in Alaska, USA. Slimy sculpin otoliths incorporated site-specific temporal variation at sub-annual resolution and were able to record on the order of 0.0001 changes in the 87Sr/86Sr ratio. 87Sr/86Sr profiles of slimy sculpin collected in tributaries and main-stem channels of the upper watershed indicated that these regions were temporally stable, whereas the Lower Nushagak River exhibited some spatio-teporal variability. This study illustrates how the behavioral ecology of a non-migratory organism can be used to evaluate sub-annual 87Sr/86Sr temporal variability and has broad implications for provenance studies employing this tracer.

Five-year results of a ponderosa pine provenance study in the Black Hills

Treesearch

James L. Van Deusen

1974-01-01

Survival and height growth data were collected after five field growing seasons from ponderosa pine progeny representing 75 provenances of natural stands in the Great Plains and Northern Rockies. Results showed that trees from no other provenance survived significantly better or grew significantly taller than trees from the Black Hills. Trees from southern Colorado,...

The explosive origin of obsidian lava (Invited)

NASA Astrophysics Data System (ADS)

Castro, J. M.; Bindeman, I. N.; Tuffen, H.; Schipper, C.

2013-12-01

A long-standing challenge in volcanology has been to explain why explosive eruptions of rhyolite magma transition into outpourings of lava. Many studies suggest that lava is the product of non-explosive processes that allow magmatic vapour to escape in an open-system manner without wholesale fragmentation. Recent eruptions at Chaitén and Cordón Caulle volcanoes have shown that effusive rhyolites are anything but 'non-explosive' and may erupt simultaneously with vigourous pyroclastic fountains for months from a common vent. This behaviour implies that pyroclastic processes play a critical if not dominant role in degassing magma sufficiently such that it erupts effusively. Here we use H-isotope and bulk H2O measurements paired with textural evidence from the 2008 Chaitén and 2011 Cordón Caulle eruptions to demonstrate that effusion requires explosion(s)--lavas are the direct product of brittle deformation that fosters batched degassing into transient pyroclastic channels that repetitively and explosively vent from effusing lava. Evidence for cyclical brecciation and collapse of porous and permeable magmatic foams is abundant in the textures and structures of tuffisites--ash and lapilli-filled pyroclastic channels--found in volcanic bombs at both Chaitén and Cordón Caulle. We have used FTIR and a TCEA-MAT 253 system to precisely measure total water and D/H in erupted glass. Bulk H2O measurements on tuffisite and adjacent bomb obsidian indicate significantly lower H2O (~0.2-1.0 wt.%) in the tuffisite veins. These depletions imply effective local degassing and rapid advective transport of exsolved vapour through the veins. The H-isotopic signatures of tuffisites are also different from the hosting material insofar as being enriched in deuterium (up to -20‰). Such deuterium enrichments are inconsistent with isotope fractionation during both closed- and open-system degassing, but can be explained if an abundant and more primitive volatile phase from less degassed

Tracking Provenance of Earth Science Data

NASA Technical Reports Server (NTRS)

Tilmes, Curt; Yesha, Yelena; Halem, Milton

2010-01-01

Tremendous volumes of data have been captured, archived and analyzed. Sensors, algorithms and processing systems for transforming and analyzing the data are evolving over time. Web Portals and Services can create transient data sets on-demand. Data are transferred from organization to organization with additional transformations at every stage. Provenance in this context refers to the source of data and a record of the process that led to its current state. It encompasses the documentation of a variety of artifacts related to particular data. Provenance is important for understanding and using scientific datasets, and critical for independent confirmation of scientific results. Managing provenance throughout scientific data processing has gained interest lately and there are a variety of approaches. Large scale scientific datasets consisting of thousands to millions of individual data files and processes offer particular challenges. This paper uses the analogy of art history provenance to explore some of the concerns of applying provenance tracking to earth science data. It also illustrates some of the provenance issues with examples drawn from the Ozone Monitoring Instrument (OMI) Data Processing System (OMIDAPS) run at NASA's Goddard Space Flight Center by the first author.

Rapid Elemental Analysis and Provenance Study of Blumea balsamifera DC Using Laser-Induced Breakdown Spectroscopy

PubMed Central

Liu, Xiaona; Zhang, Qiao; Wu, Zhisheng; Shi, Xinyuan; Zhao, Na; Qiao, Yanjiang

2015-01-01

Laser-induced breakdown spectroscopy (LIBS) was applied to perform a rapid elemental analysis and provenance study of Blumea balsamifera DC. Principal component analysis (PCA) and partial least squares discriminant analysis (PLS-DA) were implemented to exploit the multivariate nature of the LIBS data. Scores and loadings of computed principal components visually illustrated the differing spectral data. The PLS-DA algorithm showed good classification performance. The PLS-DA model using complete spectra as input variables had similar discrimination performance to using selected spectral lines as input variables. The down-selection of spectral lines was specifically focused on the major elements of B. balsamifera samples. Results indicated that LIBS could be used to rapidly analyze elements and to perform provenance study of B. balsamifera. PMID:25558999

A Scientific Data Provenance API for Distributed Applications

DOE Office of Scientific and Technical Information (OSTI.GOV)

Raju, Bibi; Elsethagen, Todd O.; Stephan, Eric G.

Data provenance has been an active area of research as a means to standardize how the origin of data, process event history, and what or who was responsible for influencing results is explained. There are two approaches to capture provenance information. The first approach is to collect observed evidence produced by an executing application using log files, event listeners, and temporary files that are used by the application or application developer. The provenance translated from these observations is an interpretation of the provided evidence. The second approach is called disclosed because the application provides a firsthand account of the provenancemore » based on the anticipated questions on data flow, process flow, and responsible agents. Most observed provenance collection systems collect lot of provenance information during an application run or workflow execution. The common trend in capturing provenance is to collect all possible information, then attempt to find relevant information, which is not efficient. Existing disclosed provenance system APIs do not work well in distributed environment and have trouble finding where to fit the individual pieces of provenance information. This work focuses on determining more reliable solutions for provenance capture. As part of the Integrated End-to-end Performance Prediction and Diagnosis for Extreme Scientific Workflows (IPPD) project, an API was developed, called Producer API (PAPI), which can disclose application targeted provenance, designed to work in distributed environments by means of unique object identification methods. The provenance disclosure approach used adds additional metadata to the provenance information to uniquely identify the pieces and connect them together. PAPI uses a common provenance model to support this provenance integration across disclosure sources. The API also provides the flexibility to let the user decide what to do with the collected provenance. The collected provenance can

Community analysis of plant biomass-degrading microorganisms from Obsidian Pool, Yellowstone National Park.

PubMed

Vishnivetskaya, Tatiana A; Hamilton-Brehm, Scott D; Podar, Mircea; Mosher, Jennifer J; Palumbo, Anthony V; Phelps, Tommy J; Keller, Martin; Elkins, James G

2015-02-01

The conversion of lignocellulosic biomass into biofuels can potentially be improved by employing robust microorganisms and enzymes that efficiently deconstruct plant polysaccharides at elevated temperatures. Many of the geothermal features of Yellowstone National Park (YNP) are surrounded by vegetation providing a source of allochthonic material to support heterotrophic microbial communities adapted to utilize plant biomass as a primary carbon and energy source. In this study, a well-known hot spring environment, Obsidian Pool (OBP), was examined for potential biomass-active microorganisms using cultivation-independent and enrichment techniques. Analysis of 33,684 archaeal and 43,784 bacterial quality-filtered 16S rRNA gene pyrosequences revealed that archaeal diversity in the main pool was higher than bacterial; however, in the vegetated area, overall bacterial diversity was significantly higher. Of notable interest was a flooded depression adjacent to OBP supporting a stand of Juncus tweedyi, a heat-tolerant rush commonly found growing near geothermal features in YNP. The microbial community from heated sediments surrounding the plants was enriched in members of the Firmicutes including potentially (hemi)cellulolytic bacteria from the genera Clostridium, Anaerobacter, Caloramator, Caldicellulosiruptor, and Thermoanaerobacter. Enrichment cultures containing model and real biomass substrates were established at a wide range of temperatures (55-85 °C). Microbial activity was observed up to 80 °C on all substrates including Avicel, xylan, switchgrass, and Populus sp. Independent of substrate, Caloramator was enriched at lower (<65 °C) temperatures while highly active cellulolytic bacteria Caldicellulosiruptor were dominant at high (>65 °C) temperatures.

Distinguishing Provenance Equivalence of Earth Science Data

NASA Technical Reports Server (NTRS)

Tilmes, Curt; Yesha, Ye; Halem, M.

2010-01-01

Reproducibility of scientific research relies on accurate and precise citation of data and the provenance of that data. Earth science data are often the result of applying complex data transformation and analysis workflows to vast quantities of data. Provenance information of data processing is used for a variety of purposes, including understanding the process and auditing as well as reproducibility. Certain provenance information is essential for producing scientifically equivalent data. Capturing and representing that provenance information and assigning identifiers suitable for precisely distinguishing data granules and datasets is needed for accurate comparisons. This paper discusses scientific equivalence and essential provenance for scientific reproducibility. We use the example of an operational earth science data processing system to illustrate the application of the technique of cascading digital signatures or hash chains to precisely identify sets of granules and as provenance equivalence identifiers to distinguish data made in an an equivalent manner.

Data provenance assurance in the cloud using blockchain

NASA Astrophysics Data System (ADS)

Shetty, Sachin; Red, Val; Kamhoua, Charles; Kwiat, Kevin; Njilla, Laurent

2017-05-01

Ever increasing adoption of cloud technology scales up the activities like creation, exchange, and alteration of cloud data objects, which create challenges to track malicious activities and security violations. Addressing this issue requires implementation of data provenance framework so that each data object in the federated cloud environment can be tracked and recorded but cannot be modified. The blockchain technology gives a promising decentralized platform to build tamper-proof systems. Its incorruptible distributed ledger/blockchain complements the need of maintaining cloud data provenance. In this paper, we present a cloud based data provenance framework using block chain which traces data record operations and generates provenance data. We anchor provenance data records into block chain transactions, which provide validation on provenance data and preserve user privacy at the same time. Once the provenance data is uploaded to the global block chain network, it is extremely challenging to tamper the provenance data. Besides, the provenance data uses hashed user identifiers prior to uploading so the blockchain nodes cannot link the operations to a particular user. The framework ensures that the privacy is preserved. We implemented the architecture on ownCloud, uploaded records to blockchain network, stored records in a provenance database and developed a prototype in form of a web service.

A Scientific Data Provenance Harvester for Distributed Applications

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stephan, Eric G.; Raju, Bibi; Elsethagen, Todd O.

Data provenance provides a way for scientists to observe how experimental data originates, conveys process history, and explains influential factors such as experimental rationale and associated environmental factors from system metrics measured at runtime. The US Department of Energy Office of Science Integrated end-to-end Performance Prediction and Diagnosis for Extreme Scientific Workflows (IPPD) project has developed a provenance harvester that is capable of collecting observations from file based evidence typically produced by distributed applications. To achieve this, file based evidence is extracted and transformed into an intermediate data format inspired in part by W3C CSV on the Web recommendations, calledmore » the Harvester Provenance Application Interface (HAPI) syntax. This syntax provides a general means to pre-stage provenance into messages that are both human readable and capable of being written to a provenance store, Provenance Environment (ProvEn). HAPI is being applied to harvest provenance from climate ensemble runs for Accelerated Climate Modeling for Energy (ACME) project funded under the U.S. Department of Energy’s Office of Biological and Environmental Research (BER) Earth System Modeling (ESM) program. ACME informally provides provenance in a native form through configuration files, directory structures, and log files that contain success/failure indicators, code traces, and performance measurements. Because of its generic format, HAPI is also being applied to harvest tabular job management provenance from Belle II DIRAC scheduler relational database tables as well as other scientific applications that log provenance related information.« less

Fagus sylvatica L. provenances maintain different leaf metabolic profiles and functional response

NASA Astrophysics Data System (ADS)

Aranda, Ismael; Sánchez-Gómez, David; de Miguel, Marina; Mancha, Jose Antonio; Guevara, María Angeles; Cadahía, Estrella; Fernández de Simón, María Brígida

2017-07-01

Most temperate forest tree species will suffer important environmental changes as result of the climate change. Adaptiveness to local conditions could change at different sites in the future. In this context, the study of intra-specific variability is important to clarify the singularity of different local populations. Phenotypic differentiation between three beech provenances covering a wide latitudinal range (Spain/ES, Germany/DE and Sweden/SE), was studied in a greenhouse experiment. Non-target leaf metabolite profiles and ecophysiological response was analyzed in well-watered and water stressed seedlings. There was a provenance-specific pattern in the relative concentrations of some leaf metabolites regardless watering treatment. The DE and SE from the center and north of the distribution area of the species showed a clear differentiation from the ES provenance in the relative concentration of some metabolites. Thus the ES provenance from the south maintained larger relative concentration of some organic and amino acids (e.g. fumaric and succinic acids or valine and isoleucine), and in some secondary metabolites (e.g. kaempferol, caffeic and ferulic acids). The ecophysiological response to mild water stress was similar among the three provenances as a consequence of the moderate water stress applied to seedlings, although leaf N isotope composition (δ15N) and leaf C:N ratio were higher and lower respectively in DE than in the other two provenances. This would suggest potential differences in the capacity to uptake and post-process nitrogen according to provenance. An important focus of the study was to address for the first time inter-provenance leaf metabolic diversity in beech from a non-targeted metabolic profiling approach that allowed differentiation of the three studied provenances.

Key Provenance of Earth Science Observational Data Products

NASA Astrophysics Data System (ADS)

Conover, H.; Plale, B.; Aktas, M.; Ramachandran, R.; Purohit, P.; Jensen, S.; Graves, S. J.

2011-12-01

As the sheer volume of data increases, particularly evidenced in the earth and environmental sciences, local arrangements for sharing data need to be replaced with reliable records about the what, who, how, and where of a data set or collection. This is frequently called the provenance of a data set. While observational data processing systems in the earth sciences have a long history of capturing metadata about the processing pipeline, current processes are limited in both what is captured and how it is disseminated to the science community. Provenance capture plays a role in scientific data preservation and stewardship precisely because it can automatically capture and represent a coherent picture of the what, how and who of a particular scientific collection. It reflects the transformations that a data collection underwent prior to its current form and the sequence of tasks that were executed and data products applied to generate a new product. In the NASA-funded Instant Karma project, we examine provenance capture in earth science applications, specifically the Advanced Microwave Scanning Radiometer - Earth Observing System (AMSR-E) Science Investigator-led Processing system (SIPS). The project is integrating the Karma provenance collection and representation tool into the AMSR-E SIPS production environment, with an initial focus on Sea Ice. This presentation will describe capture and representation of provenance that is guided by the Open Provenance Model (OPM). Several things have become clear during the course of the project to date. One is that core OPM entities and relationships are not adequate for expressing the kinds of provenance that is of interest in the science domain. OPM supports name-value pair annotations that can be used to augment what is known about the provenance entities and relationships, but in Karma, annotations cannot be added during capture, but only after the fact. This limits the capture system's ability to record something it

Neuroimaging Study Designs, Computational Analyses and Data Provenance Using the LONI Pipeline

PubMed Central

Dinov, Ivo; Lozev, Kamen; Petrosyan, Petros; Liu, Zhizhong; Eggert, Paul; Pierce, Jonathan; Zamanyan, Alen; Chakrapani, Shruthi; Van Horn, John; Parker, D. Stott; Magsipoc, Rico; Leung, Kelvin; Gutman, Boris; Woods, Roger; Toga, Arthur

2010-01-01

Modern computational neuroscience employs diverse software tools and multidisciplinary expertise to analyze heterogeneous brain data. The classical problems of gathering meaningful data, fitting specific models, and discovering appropriate analysis and visualization tools give way to a new class of computational challenges—management of large and incongruous data, integration and interoperability of computational resources, and data provenance. We designed, implemented and validated a new paradigm for addressing these challenges in the neuroimaging field. Our solution is based on the LONI Pipeline environment [3], [4], a graphical workflow environment for constructing and executing complex data processing protocols. We developed study-design, database and visual language programming functionalities within the LONI Pipeline that enable the construction of complete, elaborate and robust graphical workflows for analyzing neuroimaging and other data. These workflows facilitate open sharing and communication of data and metadata, concrete processing protocols, result validation, and study replication among different investigators and research groups. The LONI Pipeline features include distributed grid-enabled infrastructure, virtualized execution environment, efficient integration, data provenance, validation and distribution of new computational tools, automated data format conversion, and an intuitive graphical user interface. We demonstrate the new LONI Pipeline features using large scale neuroimaging studies based on data from the International Consortium for Brain Mapping [5] and the Alzheimer's Disease Neuroimaging Initiative [6]. User guides, forums, instructions and downloads of the LONI Pipeline environment are available at http://pipeline.loni.ucla.edu. PMID:20927408

SEIS-PROV: Practical Provenance for Seismological Data

NASA Astrophysics Data System (ADS)

Krischer, L.; Smith, J. A.; Tromp, J.

2015-12-01

It is widely recognized that reproducibility is crucial to advance science, but at the same time it is very hard to actually achieve. This results in it being recognized but also mostly ignored by a large fraction of the community. A key ingredient towards full reproducibility is to capture and describe the history of data, an issue known as provenance. We present SEIS-PROV, a practical format and data model to store provenance information for seismological data. In a seismological context, provenance can be seen as information about the processes that generated and modified a particular piece of data. For synthetic waveforms the provenance information describes which solver and settings therein were used to generate it. When looking at processed seismograms, the provenance conveys information about the different time series analysis steps that led to it. Additional uses include the description of derived data types, such as cross-correlations and adjoint sources, enabling their proper storage and exchange. SEIS-PROV is based on W3C PROV (http://www.w3.org/TR/prov-overview/), a standard for generic provenance information. It then applies an additional set of constraints to make it suitable for seismology. We present a definition of the SEIS-PROV format, a way to check if any given file is a valid SEIS-PROV document, and two sample implementations: One in SPECFEM3D GLOBE (https://geodynamics.org/cig/software/specfem3d_globe/) to store the provenance information of synthetic seismograms and another one as part of the ObsPy (http://obspy.org) framework enabling automatic tracking of provenance information during a series of analysis and transformation stages. This, along with tools to visualize and interpret provenance graphs, offers a description of data history that can be readily tracked, stored, and exchanged.

Height growth and foliage color in a Scotch pine provenance study in northern Michigan

Treesearch

Peter W. Garrett

1969-01-01

A Scotch pine provenance study conducted in northern Michigan revealed important differences in height growth and foliage color among seedlings from 83 European sources. Seed from southern European sources produced seedlings with the best fall foliage coloration. Height growth was fastest among seedlings from sources with latitudes like that of the Michigan planting...

Lightweight Provenance Service for High-Performance Computing

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dai, Dong; Chen, Yong; Carns, Philip

Provenance describes detailed information about the history of a piece of data, containing the relationships among elements such as users, processes, jobs, and workflows that contribute to the existence of data. Provenance is key to supporting many data management functionalities that are increasingly important in operations such as identifying data sources, parameters, or assumptions behind a given result; auditing data usage; or understanding details about how inputs are transformed into outputs. Despite its importance, however, provenance support is largely underdeveloped in highly parallel architectures and systems. One major challenge is the demanding requirements of providing provenance service in situ. Themore » need to remain lightweight and to be always on often conflicts with the need to be transparent and offer an accurate catalog of details regarding the applications and systems. To tackle this challenge, we introduce a lightweight provenance service, called LPS, for high-performance computing (HPC) systems. LPS leverages a kernel instrument mechanism to achieve transparency and introduces representative execution and flexible granularity to capture comprehensive provenance with controllable overhead. Extensive evaluations and use cases have confirmed its efficiency and usability. We believe that LPS can be integrated into current and future HPC systems to support a variety of data management needs.« less

Querying Provenance Information: Basic Notions and an Example from Paleoclimate Reconstruction

NASA Astrophysics Data System (ADS)

Stodden, V.; Ludaescher, B.; Bocinsky, K.; Kintigh, K.; Kohler, T.; McPhillips, T.; Rush, J.

2016-12-01

Computational models are used to reconstruct and explain past environments and to predict likely future environments. For example, Bocinsky and Kohler have performed a 2,000-year reconstruction of the rain-fed maize agricultural niche in the US Southwest. The resulting academic publications not only contain traditional method descriptions, figures, etc. but also links to code and data for basic transparency and reproducibility. Examples include ResearchCompendia.org and the new project "Merging Science and Cyberinfrastructure Pathways: The Whole Tale." Provenance information provides a further critical element to understand a published study and to possibly extend or challenge the findings of the original authors. We present different notions and uses of provenance information using a computational archaeology example, e.g., the common use of "provenance for others" (for transparency and reproducibility), but also the more elusive but equally important use of "provenance for self". To this end, we distinguish prospective provenance (a.k.a. workflow) from retrospective provenance (a.k.a. data lineage) and show how combinations of both forms of provenance can be used to answer different kinds of important questions about a workflow and its execution. Since many workflows are developed using scripting or special purpose languages such as Python and R, we employ an approach and toolkit called YesWorkflow that brings provenance modeling, capture, and querying into the realm of scripting. YesWorkflow employs the basic W3C PROV standard, as well as the ProvONE extension for sharing and exchanging retrospective and prospective provenance information, respectively. Finally, we argue that the utility of provenance information should be maximized by developing different kinds provenance questions and queries during the early phases of computational workflow design and implementation.

Securing Provenance of Distributed Processes in an Untrusted Environment

NASA Astrophysics Data System (ADS)

Syalim, Amril; Nishide, Takashi; Sakurai, Kouichi

Recently, there is much concern about the provenance of distributed processes, that is about the documentation of the origin and the processes to produce an object in a distributed system. The provenance has many applications in the forms of medical records, documentation of processes in the computer systems, recording the origin of data in the cloud, and also documentation of human-executed processes. The provenance of distributed processes can be modeled by a directed acyclic graph (DAG) where each node represents an entity, and an edge represents the origin and causal relationship between entities. Without sufficient security mechanisms, the provenance graph suffers from integrity and confidentiality problems, for example changes or deletions of the correct nodes, additions of fake nodes and edges, and unauthorized accesses to the sensitive nodes and edges. In this paper, we propose an integrity mechanism for provenance graph using the digital signature involving three parties: the process executors who are responsible in the nodes' creation, a provenance owner that records the nodes to the provenance store, and a trusted party that we call the Trusted Counter Server (TCS) that records the number of nodes stored by the provenance owner. We show that the mechanism can detect the integrity problem in the provenance graph, namely unauthorized and malicious “authorized” updates even if all the parties, except the TCS, collude to update the provenance. In this scheme, the TCS only needs a very minimal storage (linear with the number of the provenance owners). To protect the confidentiality and for an efficient access control administration, we propose a method to encrypt the provenance graph that allows access by paths and compartments in the provenance graph. We argue that encryption is important as a mechanism to protect the provenance data stored in an untrusted environment. We analyze the security of the integrity mechanism, and perform experiments to measure

Provenance Usage in the OceanLink Project

NASA Astrophysics Data System (ADS)

Narock, T.; Arko, R. A.; Carbotte, S. M.; Chandler, C. L.; Cheatham, M.; Fils, D.; Finin, T.; Hitzler, P.; Janowicz, K.; Jones, M.; Krisnadhi, A.; Lehnert, K. A.; Mickle, A.; Raymond, L. M.; Schildhauer, M.; Shepherd, A.; Wiebe, P. H.

2014-12-01

A wide spectrum of maturing methods and tools, collectively characterized as the Semantic Web, is helping to vastly improve thedissemination of scientific research. The OceanLink project, an NSF EarthCube Building Block, is utilizing semantic technologies tointegrate geoscience data repositories, library holdings, conference abstracts, and funded research awards. Provenance is a vital componentin meeting both the scientific and engineering requirements of OceanLink. Provenance plays a key role in justification and understanding when presenting users with results aggregated from multiple sources. In the engineering sense, provenance enables the identification of new data and the ability to determine which data sources to query. Additionally, OceanLink will leverage human and machine computation for crowdsourcing, text mining, and co-reference resolution. The results of these computations, and their associated provenance, will be folded back into the constituent systems to continually enhance precision and utility. We will touch on the various roles provenance is playing in OceanLink as well as present our use of the PROV Ontology and associated Ontology Design Patterns.

Provenance of sediments from Sumatra, Indonesia

NASA Astrophysics Data System (ADS)

Liebermann, Christof; Hall, Robert; Gough, Amy

2017-04-01

The island of Sumatra is situated at the south-western margin of the Indonesian archipelago. Sumatra is affected by active continental margin volcanism along the Sunda Trench, west of Sumatra as a result of active northeast subduction of the Indian plate under the Eurasian plate. Exposures of the Palaeozoic meta-sedimentary basement are mainly limited in extent to the northeast-southwest trending Barisan Mountain chain. The younger Cenozoic rocks are widespread across Sumatra, but can be grouped into structurally subdivided 'fore-arc', 'intramontane', and 'back-arc' basins. However, the formation of the basins pre-dates the current magmatic arc, thus a classical arc-related generation model can not be applied. The Cenozoic formations are well studied due to hydrocarbon enrichment, but little is known about their provenance history. A comprehensive sedimentary provenance study of the Cenozoic formations can aid in the wider understanding of Sumatran petroleum plays, can contribute to palaeographic reconstruction of western SE Asia, and might help to simplify the overall stratigraphy of Sumatra. This work represents a multi-proxy provenance study of sedimentary rocks from the main Cenozoic basins of Sumatra, alongside sediment from present-day river systems. The project refines the provenance in two ways: first, by studying the heavy mineral assemblages of the targeted formations, and secondly, by U-Pb detrital zircon dating using LA-ICP-MS to identify the age-range of the potential sediment sources. Preliminary U-Pb zircon age-data of >1500 concordant grains (10% discordant cut-off), heavy mineral compositions, and thin section analysis from two fieldwork seasons indicate a mixed provenance model, with a proximal igneous source, and mature basement rocks. An increase of the proximal signature in Lower-Miocene strata indicated by the occurrence of unstable heavy mineral phases such as apatite, and clinopyroxene suggests a major change of the source at the Oligocene

A unified framework for managing provenance information in translational research

PubMed Central

2011-01-01

Background A critical aspect of the NIH Translational Research roadmap, which seeks to accelerate the delivery of "bench-side" discoveries to patient's "bedside," is the management of the provenance metadata that keeps track of the origin and history of data resources as they traverse the path from the bench to the bedside and back. A comprehensive provenance framework is essential for researchers to verify the quality of data, reproduce scientific results published in peer-reviewed literature, validate scientific process, and associate trust value with data and results. Traditional approaches to provenance management have focused on only partial sections of the translational research life cycle and they do not incorporate "domain semantics", which is essential to support domain-specific querying and analysis by scientists. Results We identify a common set of challenges in managing provenance information across the pre-publication and post-publication phases of data in the translational research lifecycle. We define the semantic provenance framework (SPF), underpinned by the Provenir upper-level provenance ontology, to address these challenges in the four stages of provenance metadata: (a) Provenance collection - during data generation (b) Provenance representation - to support interoperability, reasoning, and incorporate domain semantics (c) Provenance storage and propagation - to allow efficient storage and seamless propagation of provenance as the data is transferred across applications (d) Provenance query - to support queries with increasing complexity over large data size and also support knowledge discovery applications We apply the SPF to two exemplar translational research projects, namely the Semantic Problem Solving Environment for Trypanosoma cruzi (T.cruzi SPSE) and the Biomedical Knowledge Repository (BKR) project, to demonstrate its effectiveness. Conclusions The SPF provides a unified framework to effectively manage provenance of translational

Provenance Storage, Querying, and Visualization in PBase

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kianmajd, Parisa; Ludascher, Bertram; Missier, Paolo

2015-01-01

We present PBase, a repository for scientific workflows and their corresponding provenance information that facilitates the sharing of experiments among the scientific community. PBase is interoperable since it uses ProvONE, a standard provenance model for scientific workflows. Workflows and traces are stored in RDF, and with the support of SPARQL and the tree cover encoding, the repository provides a scalable infrastructure for querying the provenance data. Furthermore, through its user interface, it is possible to: visualize workflows and execution traces; visualize reachability relations within these traces; issue SPARQL queries; and visualize query results.

Diverging drought resistance of Scots pine provenances revealed by infrared thermography and mortality

NASA Astrophysics Data System (ADS)

Seidel, Hannes; Schunk, Christian; Matiu, Michael; Menzel, Annette

2016-04-01

Climate warming and more frequent and severe drought events will alter the adaptedness and fitness of tree species. Especially, Scots pine forests have been affected above average by die-off events during the last decades. Assisted migration of adapted provenances might help alleviating impacts by recent climate change and successfully regenerating forests. However, the identification of suitable provenances based on established ecophysiological methods is time consuming, sometimes invasive, and data on provenance-specific mortality are lacking. We studied the performance, stress and survival of potted Scots pine seedlings from 12 European provenances grown in a greenhouse experiment with multiple drought and warming treatments. In this paper, we will present results of drought stress impacts monitored with four different thermal indices derived from infrared thermography imaging as well as an ample mortality study. Percent soil water deficit (PSWD) was shown to be the main driver of drought stress response in all thermal indices. In spite of wet and dry reference surfaces, however, fluctuating environmental conditions, mainly in terms of air temperature and humidity, altered the measured stress response. In linear mixed-effects models, besides PSWD and meteorological covariates, the factors provenance and provenance - PSWD interactions were included. The explanatory power of the models (R2) ranged between 0.51 to 0.83 and thus, provenance-specific responses to strong and moderate drought and subsequent recovery were revealed. However, obvious differences in the response magnitude of provenances to drought were difficult to explicitly link to general features such Mediterranean - continental type or climate at the provenances' origin. We conclude that seedlings' drought resistance may be linked to summer precipitation and their experienced stress levels are a.o. dependent on their above ground dimensions under given water supply. In respect to mortality, previous

PAV ontology: provenance, authoring and versioning.

PubMed

Ciccarese, Paolo; Soiland-Reyes, Stian; Belhajjame, Khalid; Gray, Alasdair Jg; Goble, Carole; Clark, Tim

2013-11-22

Provenance is a critical ingredient for establishing trust of published scientific content. This is true whether we are considering a data set, a computational workflow, a peer-reviewed publication or a simple scientific claim with supportive evidence. Existing vocabularies such as Dublin Core Terms (DC Terms) and the W3C Provenance Ontology (PROV-O) are domain-independent and general-purpose and they allow and encourage for extensions to cover more specific needs. In particular, to track authoring and versioning information of web resources, PROV-O provides a basic methodology but not any specific classes and properties for identifying or distinguishing between the various roles assumed by agents manipulating digital artifacts, such as author, contributor and curator. We present the Provenance, Authoring and Versioning ontology (PAV, namespace http://purl.org/pav/): a lightweight ontology for capturing "just enough" descriptions essential for tracking the provenance, authoring and versioning of web resources. We argue that such descriptions are essential for digital scientific content. PAV distinguishes between contributors, authors and curators of content and creators of representations in addition to the provenance of originating resources that have been accessed, transformed and consumed. We explore five projects (and communities) that have adopted PAV illustrating their usage through concrete examples. Moreover, we present mappings that show how PAV extends the W3C PROV-O ontology to support broader interoperability. The initial design of the PAV ontology was driven by requirements from the AlzSWAN project with further requirements incorporated later from other projects detailed in this paper. The authors strived to keep PAV lightweight and compact by including only those terms that have demonstrated to be pragmatically useful in existing applications, and by recommending terms from existing ontologies when plausible. We analyze and compare PAV with related

Tracing dust provenance in paleoclimate records using mineralogical and isotopic fingerprints: additional clues from present-day studies

NASA Astrophysics Data System (ADS)

Bory, A. J.; Skonieczny, C.; Bout-Roumazeilles, V.; Grousset, F. E.; Biscaye, P. E.

2011-12-01

Dust records retrieved from ice and sediment cores represent some of our most valuable evidence for modifications of atmospheric circulation on various times scales over the last few Pleistocene glacial and interglacial climate cycles. These data also contribute to the documentation of changes in continental paleo-environments (e.g., changes in aridity), changes in iron inputs to the ocean, as well as changes in the hydrological cycle. Interpreting ice and sediment-core dust records, and using them for modelling purposes, requires firstly a good understanding of the dust provenance and its possible temporal variability. Specific intrinsic tracers such as clay mineralogy, major and trace elements, and radiogenic isotopes (strontium, neodymium, lead) have been used for this purpose, with variable effectiveness. One difficulty lies in the fact that these measurements require significant amount of mineral particles and can thus only be obtained at low temporal resolution, either because of the low dust concentration in ice cores or because of the low mass accumulation rates and bioturbation in marine sediments. As a result, dust samples extracted from ice and sediment cores for provenance investigation average long periods of time and may reflect mixtures from various source areas, complicating the interpretation of the data. Still, provenance tracers (clay mineralogy and Sr-Nd isotopes in particular) made possible for instance the discrimination of which continents provided most of the dust deposited in remote locations such as Greenland and Antarctica during the dusty glacial stages. The locations of the contributing source areas, however, were not precisely identified. During the low-dust, interglacial periods, provenance has proven more difficult to establish unambiguously, even at broad (i.e., continental) geographic scales. In other aeolian deposits, such as Asian loess or marine sediments off West Africa, the provenance of the dust is still poorly constrained

Hf isotope compositions In detrital zircons as a new tool for provenance studies

NASA Astrophysics Data System (ADS)

Jacobsen, Y. J.; Münker, C.; Mezger, K.

2003-04-01

Identifying the provenance of continental sediments is a major issue in palaeo-tectonic studies, providing important information for paleogeographic reconstructions. Isotope studies, e.g. those of whole rock Sm-Nd or detrital zircon U-Pb dating, have widely been used for this purpose. Here we assess the potential of combined Lu-Hf data and U-Pb ages determined on the same single detrital zircons as a new tool for provenance studies. Due to the low Lu/Hf ratios in zircons the Hf isotope composition of a zircon changes insignificantly after its crystallization. Thus each particular grain preserves information on the Hf-siotpe composition of its source and the age of this source. Provided that both the U-Pb and Lu-Hf isotope systems have not been disturbed, this information can be used to constrain the sources of each individual zircon. In order to demonstrate the capability of Hf isotope studies on detrital zircons for provenance studies, we obtained combined U-Pb ages and Lu-Hf isotope data for zircons from the Cambrian Junction Formation in New Zealand. The Junction Formation was deposited on the (present) SE margin of Gondwana near the Australian continent and consists of turbidites, siltstones and conglomerates [1]. Typical continent derived Paleozoic sediments in SE Gondwana generally show characteristic age maxima at 500-600 Ma, 1000-1200 Ma (Grenvillian) and additional older peaks (early Proterozoic to Archean) [2]. We focused on two groups of detrital zircons with Grenvillian and Proterozoic to Late Archean ages. The initial ɛHf values for these zircons range from 0.7 to -15.5 for the Grenvillian and from -5.2 to -14.1 for the Proterozoic/Archean zircons. Corresponding two stage Hf model ages range from ca. 1500 to 2500 Ma for the Grenvillian and from ca. 3200 to 3600 Ma for the Proterozoic/Archean zircons. Furthermore it can be shown that the Grenvillian zircons must have been derived from recycled Grenvillian provinces. Comparison of these Hf model ages

Secure Location Provenance for Mobile Devices

DTIC Science & Technology

2015-07-01

SECURE LOCATION PROVENANCE FOR MOBILE DEVICES UNIVERSITY OF ALABAMA AT BIRMINGHAM JULY 2015 FINAL TECHNICAL REPORT...PROVENANCE FOR MOBILE DEVICES 5a. CONTRACT NUMBER FA8750-12-2-0254 5b. GRANT NUMBER N/A 5c. PROGRAM ELEMENT NUMBER 69220K 6. AUTHOR(S) Ragib Hasan...based services allow mobile device users to access various services based on the users’ current physical location information. Path-critical applications

Big Data Provenance: Challenges, State of the Art and Opportunities.

PubMed

Wang, Jianwu; Crawl, Daniel; Purawat, Shweta; Nguyen, Mai; Altintas, Ilkay

2015-01-01

Ability to track provenance is a key feature of scientific workflows to support data lineage and reproducibility. The challenges that are introduced by the volume, variety and velocity of Big Data, also pose related challenges for provenance and quality of Big Data, defined as veracity. The increasing size and variety of distributed Big Data provenance information bring new technical challenges and opportunities throughout the provenance lifecycle including recording, querying, sharing and utilization. This paper discusses the challenges and opportunities of Big Data provenance related to the veracity of the datasets themselves and the provenance of the analytical processes that analyze these datasets. It also explains our current efforts towards tracking and utilizing Big Data provenance using workflows as a programming model to analyze Big Data.

Big Data Provenance: Challenges, State of the Art and Opportunities

PubMed Central

Wang, Jianwu; Crawl, Daniel; Purawat, Shweta; Nguyen, Mai; Altintas, Ilkay

2017-01-01

Ability to track provenance is a key feature of scientific workflows to support data lineage and reproducibility. The challenges that are introduced by the volume, variety and velocity of Big Data, also pose related challenges for provenance and quality of Big Data, defined as veracity. The increasing size and variety of distributed Big Data provenance information bring new technical challenges and opportunities throughout the provenance lifecycle including recording, querying, sharing and utilization. This paper discusses the challenges and opportunities of Big Data provenance related to the veracity of the datasets themselves and the provenance of the analytical processes that analyze these datasets. It also explains our current efforts towards tracking and utilizing Big Data provenance using workflows as a programming model to analyze Big Data. PMID:29399671

The Symbiotic Relationship between Scientific Workflow and Provenance (Invited)

NASA Astrophysics Data System (ADS)

Stephan, E.

2010-12-01

The purpose of this presentation is to describe the symbiotic nature of scientific workflows and provenance. We will also discuss the current trends and real world challenges facing these two distinct research areas. Although motivated differently, the needs of the international science communities are the glue that binds this relationship together. Understanding and articulating the science drivers to these communities is paramount as these technologies evolve and mature. Originally conceived for managing business processes, workflows are now becoming invaluable assets in both computational and experimental sciences. These reconfigurable, automated systems provide essential technology to perform complex analyses by coupling together geographically distributed disparate data sources and applications. As a result, workflows are capable of higher throughput in a shorter amount of time than performing the steps manually. Today many different workflow products exist; these could include Kepler and Taverna or similar products like MeDICI, developed at PNNL, that are standardized on the Business Process Execution Language (BPEL). Provenance, originating from the French term Provenir “to come from”, is used to describe the curation process of artwork as art is passed from owner to owner. The concept of provenance was adopted by digital libraries as a means to track the lineage of documents while standards such as the DublinCore began to emerge. In recent years the systems science community has increasingly expressed the need to expand the concept of provenance to formally articulate the history of scientific data. Communities such as the International Provenance and Annotation Workshop (IPAW) have formalized a provenance data model. The Open Provenance Model, and the W3C is hosting a provenance incubator group featuring the Proof Markup Language. Although both workflows and provenance have risen from different communities and operate independently, their mutual

Application of Data Provenance in Healthcare Analytics Software: Information Visualisation of User Activities

PubMed Central

Xu, Shen; Rogers, Toby; Fairweather, Elliot; Glenn, Anthony; Curran, James; Curcin, Vasa

2018-01-01

Data provenance is a technique that describes the history of digital objects. In health data settings, it can be used to deliver auditability and transparency, and to achieve trust in a software system. However, implementing data provenance in analytics software at an enterprise level presents a different set of challenges from the research environments where data provenance was originally devised. In this paper, the challenges of reporting provenance information to the user is presented. Provenance captured from analytics software can be large and complex and visualizing a series of tasks over a long period can be overwhelming even for a domain expert, requiring visual aggregation mechanisms that fit with complex human cognitive activities involved in the process. This research studied how provenance-based reporting can be integrated into a health data analytics software, using the example of Atmolytics visual reporting tool. PMID:29888084

Applying Content Management to Automated Provenance Capture

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schuchardt, Karen L.; Gibson, Tara D.; Stephan, Eric G.

2008-04-10

Workflows and data pipelines are becoming increasingly valuable in both computational and experimen-tal sciences. These automated systems are capable of generating significantly more data within the same amount of time than their manual counterparts. Automatically capturing and recording data prove-nance and annotation as part of these workflows is critical for data management, verification, and dis-semination. Our goal in addressing the provenance challenge was to develop and end-to-end system that demonstrates real-time capture, persistent content management, and ad-hoc searches of both provenance and metadata using open source software and standard protocols. We describe our prototype, which extends the Kepler workflow toolsmore » for the execution environment, the Scientific Annotation Middleware (SAM) content management software for data services, and an existing HTTP-based query protocol. Our implementation offers several unique capabilities, and through the use of standards, is able to pro-vide access to the provenance record to a variety of commonly available client tools.« less

Close or not so close? Provenance studies of megalithic monuments from Alentejo (Portugal)

NASA Astrophysics Data System (ADS)

Boaventura, R.; Moita, P.

2012-04-01

There has been a significant amount of studies about megalithic tombs conducted in the Alentejo region. However the geological provenance of monoliths used in the construction of those tombs usually was not a priority among researchers with rare exceptions (Dehn, Kalb and Vortisch, 1991; Boaventura, 2000). Recent studies of dolmens (Oliveira, 1997 and 2006; Gonçalves, 2003) refer only to a brief characterization of rocks, such as "granite or schist slabs", highlighting certain types if the geological stratum is identical or not to the stone blocks. On the other hand, when the type of raw material appears to be similar with the bedrock, it is common and empirically assumed its local provenance. With the aim of testing and expand the knowledge about the provenance of the slabs used in the construction of megalithic tombs, several lithic samples from dolmen slabs and outcrops in their surroundings were collected for analysis and comparison. The samples were characterized by petrographic studies in thin section as well with a geochemical analyses performed by XRF that gives major elements as well some trace elements. The dolmens tested for this project are located roughly between the northeast to west of the town of Monforte (Upper region of Alentejo, Portugal) and are named, from south to north, as Serrinha, Rabuje group (1 to 5), Geodésico de Besteiros 3 and Velho. The field work and petrographic studies revealed that the slabs are constituted mainly by several types of granitoids (gnaissic, red, white, tonalitic), amphibolites and mottled schist shale. The comparison of chemical analyses between slabs and selected outcrops revealed that the provenances are in most of the cases from the nearby geological stratum. In fact, major elements (e.g. MgO, SiO2, CaO) as well trace elements (e.g. Sr, Y, Zr, Nb) compositions are similar on slab samples and in rocks from the outcrops. If in terms of major elements a similarity was already expectable, or easier to obtain, the

PAV ontology: provenance, authoring and versioning

PubMed Central

2013-01-01

Background Provenance is a critical ingredient for establishing trust of published scientific content. This is true whether we are considering a data set, a computational workflow, a peer-reviewed publication or a simple scientific claim with supportive evidence. Existing vocabularies such as Dublin Core Terms (DC Terms) and the W3C Provenance Ontology (PROV-O) are domain-independent and general-purpose and they allow and encourage for extensions to cover more specific needs. In particular, to track authoring and versioning information of web resources, PROV-O provides a basic methodology but not any specific classes and properties for identifying or distinguishing between the various roles assumed by agents manipulating digital artifacts, such as author, contributor and curator. Results We present the Provenance, Authoring and Versioning ontology (PAV, namespace http://purl.org/pav/): a lightweight ontology for capturing “just enough” descriptions essential for tracking the provenance, authoring and versioning of web resources. We argue that such descriptions are essential for digital scientific content. PAV distinguishes between contributors, authors and curators of content and creators of representations in addition to the provenance of originating resources that have been accessed, transformed and consumed. We explore five projects (and communities) that have adopted PAV illustrating their usage through concrete examples. Moreover, we present mappings that show how PAV extends the W3C PROV-O ontology to support broader interoperability. Method The initial design of the PAV ontology was driven by requirements from the AlzSWAN project with further requirements incorporated later from other projects detailed in this paper. The authors strived to keep PAV lightweight and compact by including only those terms that have demonstrated to be pragmatically useful in existing applications, and by recommending terms from existing ontologies when plausible. Discussion

Analysis of Antarctic glacigenic sediment provenance through geochemical and petrologic applications

NASA Astrophysics Data System (ADS)

Licht, Kathy J.; Hemming, Sidney R.

2017-05-01

The number of provenance studies of glacigenic sediments in Antarctica has increased dramatically over the past decade, providing an enhanced understanding of ice sheet history and dynamics, along with the broader geologic history. Such data have been used to assess glacial erosion patterns at the catchment scale, flow path reconstructions over a wide range of scales, and ice sheet fluctuations indicated by iceberg rafted debris in circumantarctic glacial marine sediments. It is notable that even though most of the bedrock of the continent is ice covered and inaccessible, provenance data can provide such valuable information about Antarctic ice and can even be used to infer buried rock types along with their geo- and thermochronologic history. Glacigenic sediments provide a broader array of provenance analysis opportunities than any other sediment type because of their wide range of grain sizes, and in this paper we review methods and examples from all size fractions that have been applied to the Antarctic glacigenic sedimentary record. Interpretations of these records must take careful consideration of the choice of analytical methods, uneven patterns of erosion, and spatial variability in sediment transport and rock types, which all may lead to a preferential identification of different elements of sources in the provenance analyses. Because of this, we advocate a multi-proxy approach and highlight studies that demonstrate the value of selecting complementary provenance methods.

Provenance research: investigation of genetic diversity associated with geography

Treesearch

Robert Z. Callaham

1963-01-01

Provenance in forestry refers to the population of trees growing at n particular place of origin. Provenance research defines the genetic and environmental components of phenotypic variation associated with geographic source. Information on provenance is important in assuring sources of seed to give well-adapted, productive trees and in directing breeding of...

Provenance Store Evaluation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Paulson, Patrick R.; Gibson, Tara D.; Schuchardt, Karen L.

2008-03-01

Requirements for the provenance store and access API are developed. Existing RDF stores and APIs are evaluated against the requirements and performance benchmarks. The team’s conclusion is to use MySQL as a database backend, with a possible move to Oracle in the near-term future. Both Jena and Sesame’s APIs will be supported, but new code will use the Jena API

Community analysis of plant biomass-degrading microorganisms from Obsidian Pool, Yellowstone National Park

DOE PAGES

Vishnivetskaya, Tatiana A.; Hamilton-Brehm, Scott D.; Podar, Mircea; ...

2014-10-16

The conversion of lignocellulosic biomass into biofuels can potentially be improved by employing robust microorganisms and enzymes that efficiently deconstruct plant polysaccharides at elevated temperatures. Many of the geothermal features of Yellowstone National Park (YNP) are surrounded by vegetation providing a source of allochthonic material to support heterotrophic microbial communities adapted to utilize plant biomass as a primary carbon and energy source. In this paper, a well-known hot spring environment, Obsidian Pool (OBP), was examined for potential biomass-active microorganisms using cultivation-independent and enrichment techniques. Analysis of 33,684 archaeal and 43,784 bacterial quality-filtered 16S rRNA gene pyrosequences revealed that archaeal diversitymore » in the main pool was higher than bacterial; however, in the vegetated area, overall bacterial diversity was significantly higher. Of notable interest was a flooded depression adjacent to OBP supporting a stand of Juncus tweedyi, a heat-tolerant rush commonly found growing near geothermal features in YNP. The microbial community from heated sediments surrounding the plants was enriched in members of the Firmicutes including potentially (hemi)cellulolytic bacteria from the genera Clostridium, Anaerobacter, Caloramator, Caldicellulosiruptor, and Thermoanaerobacter. Enrichment cultures containing model and real biomass substrates were established at a wide range of temperatures (55–85 °C). Microbial activity was observed up to 80 °C on all substrates including Avicel, xylan, switchgrass, and Populus sp. Finally, independent of substrate, Caloramator was enriched at lower (<65 °C) temperatures while highly active cellulolytic bacteria Caldicellulosiruptor were dominant at high (>65 °C) temperatures.« less

Community analysis of plant biomass-degrading microorganisms from Obsidian Pool, Yellowstone National Park

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vishnivetskaya, Tatiana A.; Hamilton-Brehm, Scott D.; Podar, Mircea

The conversion of lignocellulosic biomass into biofuels can potentially be improved by employing robust microorganisms and enzymes that efficiently deconstruct plant polysaccharides at elevated temperatures. Many of the geothermal features of Yellowstone National Park (YNP) are surrounded by vegetation providing a source of allochthonic material to support heterotrophic microbial communities adapted to utilize plant biomass as a primary carbon and energy source. In this paper, a well-known hot spring environment, Obsidian Pool (OBP), was examined for potential biomass-active microorganisms using cultivation-independent and enrichment techniques. Analysis of 33,684 archaeal and 43,784 bacterial quality-filtered 16S rRNA gene pyrosequences revealed that archaeal diversitymore » in the main pool was higher than bacterial; however, in the vegetated area, overall bacterial diversity was significantly higher. Of notable interest was a flooded depression adjacent to OBP supporting a stand of Juncus tweedyi, a heat-tolerant rush commonly found growing near geothermal features in YNP. The microbial community from heated sediments surrounding the plants was enriched in members of the Firmicutes including potentially (hemi)cellulolytic bacteria from the genera Clostridium, Anaerobacter, Caloramator, Caldicellulosiruptor, and Thermoanaerobacter. Enrichment cultures containing model and real biomass substrates were established at a wide range of temperatures (55–85 °C). Microbial activity was observed up to 80 °C on all substrates including Avicel, xylan, switchgrass, and Populus sp. Finally, independent of substrate, Caloramator was enriched at lower (<65 °C) temperatures while highly active cellulolytic bacteria Caldicellulosiruptor were dominant at high (>65 °C) temperatures.« less

Bridging the provenance gap: opportunities and challenges tracking in and ex silico provenance in sUAS workflows

NASA Astrophysics Data System (ADS)

Thomer, A.

2017-12-01

Data provenance - the record of the varied processes that went into the creation of a dataset, as well as the relationships between resulting data objects - is necessary to support the reusability, reproducibility and reliability of earth science data. In sUAS-based research, capturing provenance can be particularly challenging because of the breadth and distributed nature of the many platforms used to collect, process and analyze data. In any given project, multiple drones, controllers, computers, software systems, sensors, cameras, imaging processing algorithms and data processing workflows are used over sometimes long periods of time. These platforms and processing result in dozens - if not hundreds - of data products in varying stages of readiness-for-analysis and sharing. Provenance tracking mechanisms are needed to make the relationships between these many data products explicit, and therefore more reusable and shareable. In this talk, I discuss opportunities and challenges in tracking provenance in sUAS-based research, and identify gaps in current workflow-capture technologies. I draw on prior work conducted as part of the IMLS-funded Site-Based Data Curation project in which we developed methods of documenting in and ex silico (that is, computational and non-computation) workflows, and demonstrate this approaches applicability to research with sUASes. I conclude with a discussion of ontologies and other semantic technologies that have potential application in sUAS research.

Gold Provenance Studies for Romanian Archaeological Objects Using Micro-SR-XRF

NASA Astrophysics Data System (ADS)

Vasilescu, Angela; Constantinescu, Bogdan; Bugoi, Roxana; Radtke, Martin; Reinholz, Uwe; Simon, Rolf

2010-04-01

Studies by Synchrotron Radiation—X-Ray Fluorescence (SR-XRF) for the search of the presence of trace elements like Sb, Sn, Te and Pb in archaeological metallic objects found on the territory of Romania—old coins and Bronze Age jewelry, aimed to determine the provenance of the gold used in their manufacture. The results are compared with the detailed elemental composition of alluvial or primary gold samples, obtained by the same technique. This work attempted to establish the origin of the gold used for the mint of two different types of koson coins. We found that the kosons with monogram are made of refined gold, while the one used for the kosons without monogram is mainly alluvial. The gold used in the manufacture of the Calarasi Vulchitrun-type disk and the Tauteu hair ring is also of alluvial origin.

Preliminary results on time-resolved ion beam induced luminescence applied to the provenance study of lapis lazuli

NASA Astrophysics Data System (ADS)

Czelusniak, C.; Palla, L.; Massi, M.; Carraresi, L.; Giuntini, L.; Re, A.; Lo Giudice, A.; Pratesi, G.; Mazzinghi, A.; Ruberto, C.; Castelli, L.; Fedi, M. E.; Liccioli, L.; Gueli, A.; Mandò, P. A.; Taccetti, F.

2016-03-01

This work will present preliminary results concerning the use of time-resolved ion beam induced luminescence applied to provenance studies of lapis lazuli. Measurements were performed at the pulsed beam facility at LABEC laboratory in Florence. Lapis lazuli is a semi-precious gemstone, used as ornament since the early civilizations that can be found in few places on Earth. The importance of this work lies in understanding the origin of various samples of lapis lazuli, from which it may be possible to gain insight into trade routes from ancient times. The samples studied in this work originated from Chile, Afghanistan, Tajikistan, Myanmar, and Siberia. The stones were irradiated with 3 MeV protons and the resulting luminescence was detected by a photomultiplier tube, whose output was acquired using a sampling digitizer VME module (CAEN/V1720). Wavelength discrimination was performed at 430 nm utilizing a range of beam currents. The results showed that, by changing the beam current intensity, one can study different features of lapis lazuli, and this may aid in distinguishing lapis lazuli from different provenances.

Provenance-Powered Automatic Workflow Generation and Composition

NASA Astrophysics Data System (ADS)

Zhang, J.; Lee, S.; Pan, L.; Lee, T. J.

2015-12-01

In recent years, scientists have learned how to codify tools into reusable software modules that can be chained into multi-step executable workflows. Existing scientific workflow tools, created by computer scientists, require domain scientists to meticulously design their multi-step experiments before analyzing data. However, this is oftentimes contradictory to a domain scientist's daily routine of conducting research and exploration. We hope to resolve this dispute. Imagine this: An Earth scientist starts her day applying NASA Jet Propulsion Laboratory (JPL) published climate data processing algorithms over ARGO deep ocean temperature and AMSRE sea surface temperature datasets. Throughout the day, she tunes the algorithm parameters to study various aspects of the data. Suddenly, she notices some interesting results. She then turns to a computer scientist and asks, "can you reproduce my results?" By tracking and reverse engineering her activities, the computer scientist creates a workflow. The Earth scientist can now rerun the workflow to validate her findings, modify the workflow to discover further variations, or publish the workflow to share the knowledge. In this way, we aim to revolutionize computer-supported Earth science. We have developed a prototyping system to realize the aforementioned vision, in the context of service-oriented science. We have studied how Earth scientists conduct service-oriented data analytics research in their daily work, developed a provenance model to record their activities, and developed a technology to automatically generate workflow starting from user behavior and adaptability and reuse of these workflows for replicating/improving scientific studies. A data-centric repository infrastructure is established to catch richer provenance to further facilitate collaboration in the science community. We have also established a Petri nets-based verification instrument for provenance-based automatic workflow generation and recommendation.

Ontology-Driven Provenance Management in eScience: An Application in Parasite Research

NASA Astrophysics Data System (ADS)

Sahoo, Satya S.; Weatherly, D. Brent; Mutharaju, Raghava; Anantharam, Pramod; Sheth, Amit; Tarleton, Rick L.

Provenance, from the French word "provenir", describes the lineage or history of a data entity. Provenance is critical information in scientific applications to verify experiment process, validate data quality and associate trust values with scientific results. Current industrial scale eScience projects require an end-to-end provenance management infrastructure. This infrastructure needs to be underpinned by formal semantics to enable analysis of large scale provenance information by software applications. Further, effective analysis of provenance information requires well-defined query mechanisms to support complex queries over large datasets. This paper introduces an ontology-driven provenance management infrastructure for biology experiment data, as part of the Semantic Problem Solving Environment (SPSE) for Trypanosoma cruzi (T.cruzi). This provenance infrastructure, called T.cruzi Provenance Management System (PMS), is underpinned by (a) a domain-specific provenance ontology called Parasite Experiment ontology, (b) specialized query operators for provenance analysis, and (c) a provenance query engine. The query engine uses a novel optimization technique based on materialized views called materialized provenance views (MPV) to scale with increasing data size and query complexity. This comprehensive ontology-driven provenance infrastructure not only allows effective tracking and management of ongoing experiments in the Tarleton Research Group at the Center for Tropical and Emerging Global Diseases (CTEGD), but also enables researchers to retrieve the complete provenance information of scientific results for publication in literature.

Description and Evaluation of the Cultural Resources within Mathews Canyon and Pine Canyon, Lincoln County, Nevada. Cultural Resources Report. Appendix,

DTIC Science & Technology

1977-09-30

U cm. (Fire cracked rock, charcoal). 28. Burials 29. Artifacts White chert scraper, obsidian biface; broken tool blanks. Flakes: obsidian , core...mostly obsidian ; 1 red chert. 30. Remarks Deer tracks & trail; horse manure; rabbit. 31. Published references 32. Accession No. __________33. Sketch map...Burials 29. Artifacts Dozens of flakes: chert, obsidian , chalcedony, basalt chert is various colors; obsidian core, red chert biface obsidian drill

Seamless Provenance Representation and Use in Collaborative Science Scenarios

NASA Astrophysics Data System (ADS)

Missier, P.; Ludaescher, B.; Bowers, S.; Altintas, I.; Anand, M. K.; Dey, S.; Sarkar, A.; Shrestha, B.; Goble, C.

2010-12-01

The notion of sharing scientific data has only recently begun to gain ground in science, where data is still considered a private asset. There is growing evidence, however, that the benefits of scientific collaboration through early data sharing during the course of a science project may outgrow the risk of losing exclusive ownership of the data. As exemplar success stories are making the headlines[1], principles of effective information sharing have become the subject of e-science research. In particular, any piece of published data should be self-describing, to the extent necessary for consumers to determine its suitability for reuse in their own projects. This is accomplished by associating a body of formally specified and machine-processable metadata to the data. When data is produced and reused by independent groups, however, metadata interoperability issues emerge. This is the case for provenance, a form of metadata that describes the history of a data product, Y. Provenance is typically expressed as a graph-structured set of dependencies that account for the sequence of computational or interactive steps that led to Y, often starting from some primary, observational data. Traversing dependency graphs is one of the mechanisms used to answer questions on data reliability. In the context of the NSF DataONE project[2], we have been studying issues of provenance interoperability in scientific collaboration scenarios. Consider a first scientist, Alice, who publishes a data product X along with its provenance, and a second scientist who further transforms X into a new product Y, also along with its provenance. A third scientist, who is interested in Y, expects to be able to trace Y's history up to the inputs used by Alice. This is only possible, however, if provenance accumulates into a single, uniform graph that can be seamlessly traversed. This becomes problematic when provenance is captured using different tools and computational models (i.e. workflow systems

Innocent Until Proven Guilty

ERIC Educational Resources Information Center

Case, Catherine; Whitaker, Douglas

2016-01-01

In the criminal justice system, defendants accused of a crime are presumed innocent until proven guilty. Statistical inference in any context is built on an analogous principle: The null hypothesis--often a hypothesis of "no difference" or "no effect"--is presumed true unless there is sufficient evidence against it. In this…

Missing Rings, Synchronous Growth, and Ecological Disturbance in a 36-Year Pitch Pine (Pinus rigida) Provenance Study

Treesearch

Caroline Leland; John Hom; Nicholas Skowronski; F. Thomas Ledig; Paul J. Krusic; Edward R. Cook; Dario Martin-Benito; Javier Martin-Fernandez; Neil Pederson; Dusan Gomory

2016-01-01

Provenance studies are an increasingly important analog for understanding how trees adapted to particular climatic conditions might respond to climate change. Dendrochronological analysis can illuminate differences among trees from different seed sources in terms of absolute annual growth and sensitivity to external growth factors. We analyzed annual radial growth of...

MCloud: Secure Provenance for Mobile Cloud Users

DTIC Science & Technology

2016-10-03

Feasibility of Smartphone Clouds , 2015 15th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid). 04-MAY- 15, Shenzhen, China...final decision. MCloud: Secure Provenance for Mobile Cloud Users Final Report Bogdan Carbunar Florida International University Computing and...Release; Distribution Unlimited UU UU UU UU 03-10-2016 31-May-2013 30-May-2016 Final Report: MCloud: Secure Provenance for Mobile Cloud Users The views

Restful Implementation of Catalogue Service for Geospatial Data Provenance

NASA Astrophysics Data System (ADS)

Jiang, L. C.; Yue, P.; Lu, X. C.

2013-10-01

Provenance, also known as lineage, is important in understanding the derivation history of data products. Geospatial data provenance helps data consumers to evaluate the quality and reliability of geospatial data. In a service-oriented environment, where data are often consumed or produced by distributed services, provenance could be managed by following the same service-oriented paradigm. The Open Geospatial Consortium (OGC) Catalogue Service for the Web (CSW) is used for the registration and query of geospatial data provenance by extending ebXML Registry Information Model (ebRIM). Recent advance of the REpresentational State Transfer (REST) paradigm has shown great promise for the easy integration of distributed resources. RESTful Web Service aims to provide a standard way for Web clients to communicate with servers based on REST principles. The existing approach for provenance catalogue service could be improved by adopting the RESTful design. This paper presents the design and implementation of a catalogue service for geospatial data provenance following RESTful architecture style. A middleware named REST Converter is added on the top of the legacy catalogue service to support a RESTful style interface. The REST Converter is composed of a resource request dispatcher and six resource handlers. A prototype service is developed to demonstrate the applicability of the approach.

Gold Provenance Studies for Romanian Archaeological Objects Using Micro-SR-XRF

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vasilescu, Angela; Constantinescu, Bogdan; Bugoi, Roxana

2010-04-06

Studies by Synchrotron Radiation--X-Ray Fluorescence (SR-XRF) for the search of the presence of trace elements like Sb, Sn, Te and Pb in archaeological metallic objects found on the territory of Romania--old coins and Bronze Age jewelry, aimed to determine the provenance of the gold used in their manufacture. The results are compared with the detailed elemental composition of alluvial or primary gold samples, obtained by the same technique. This work attempted to establish the origin of the gold used for the mint of two different types of koson coins. We found that the kosons with monogram are made of refinedmore » gold, while the one used for the kosons without monogram is mainly alluvial. The gold used in the manufacture of the Calarasi Vulchitrun-type disk and the Tauteu hair ring is also of alluvial origin.« less

Nonalbumin proteinuria predominates in biopsy-proven tenofovir nephrotoxicity.

PubMed

Sise, Meghan E; Hirsch, Jamie S; Canetta, Pietro A; Herlitz, Leal; Mohan, Sumit

2015-05-15

Tenofovir disoproxil fumarate (TDF) nephrotoxicity is characterized by proximal renal tubular injury and dysmorphic mitochondria resulting in proteinuria, orthoglycemic glycosuria, and other markers of proximal tubular dysfunction. The objective of this study was to determine the pattern of proteinuria in patients with biopsy-proven TDF nephrotoxicity. Retrospective chart review. Patients with biopsy-proven TDF nephrotoxicity were identified and their medical charts and biopsy reports were reviewed. Comparison was made with HIV-infected patients not on TDF who underwent kidney biopsy. We identified 43 biopsy-proven cases of TDF nephrotoxicity; mean age 54.7 ± 0.4 years, 53% men, 42% whites. Thirty-seven cases reported proteinuria by dipstick of which only 60% had at least 2+ proteinuria. Twenty-seven patients had urine protein quantified by either 24-h collection or spot urine protein-to-creatinine ratio; median proteinuria was 1742 mg/day [interquartile range (IQR) 1200-2000 mg] and 1667 mg/g creatinine (IQR 851-1967 mg/g), respectively. Ten patients had concurrent urinary albumin measured, with a median 236 mg/g creatinine (IQR 137-343 mg/g). The mean urine albumin-to-urine protein ratio (uAPR) was 0.17 (IQR 0.14-0.19), confirming that TDF nephrotoxicity is primarily associated with nonalbumin proteinuria. Control cases had a uAPR of 0.65 (IQR 0.55-0.79) P < 0.001. Histopathology showed the predominance of proximal tubular injury with characteristic mitochondrial abnormalities. In the largest published cohort of patients with biopsy-proven TDF nephrotoxicity, we show that low uAPR is a reliable feature of this disease. Because of the predominance of nonalbumin proteinuria, dipstick urinalysis may be unreliable in TDF nephrotoxicity.

Provenance in Data Interoperability for Multi-Sensor Intercomparison

NASA Technical Reports Server (NTRS)

Lynnes, Chris; Leptoukh, Greg; Berrick, Steve; Shen, Suhung; Prados, Ana; Fox, Peter; Yang, Wenli; Min, Min; Holloway, Dan; Enloe, Yonsook

2008-01-01

As our inventory of Earth science data sets grows, the ability to compare, merge and fuse multiple datasets grows in importance. This requires a deeper data interoperability than we have now. Efforts such as Open Geospatial Consortium and OPeNDAP (Open-source Project for a Network Data Access Protocol) have broken down format barriers to interoperability; the next challenge is the semantic aspects of the data. Consider the issues when satellite data are merged, cross-calibrated, validated, inter-compared and fused. We must match up data sets that are related, yet different in significant ways: the phenomenon being measured, measurement technique, location in space-time or quality of the measurements. If subtle distinctions between similar measurements are not clear to the user, results can be meaningless or lead to an incorrect interpretation of the data. Most of these distinctions trace to how the data came to be: sensors, processing and quality assessment. For example, monthly averages of satellite-based aerosol measurements often show significant discrepancies, which might be due to differences in spatio- temporal aggregation, sampling issues, sensor biases, algorithm differences or calibration issues. Provenance information must be captured in a semantic framework that allows data inter-use tools to incorporate it and aid in the intervention of comparison or merged products. Semantic web technology allows us to encode our knowledge of measurement characteristics, phenomena measured, space-time representation, and data quality attributes in a well-structured, machine-readable ontology and rulesets. An analysis tool can use this knowledge to show users the provenance-related distrintions between two variables, advising on options for further data processing and analysis. An additional problem for workflows distributed across heterogeneous systems is retrieval and transport of provenance. Provenance may be either embedded within the data payload, or transmitted

Data Provenance Hybridization Supporting Extreme-Scale Scientific WorkflowApplications

DOE Office of Scientific and Technical Information (OSTI.GOV)

Elsethagen, Todd O.; Stephan, Eric G.; Raju, Bibi

As high performance computing (HPC) infrastructures continue to grow in capability and complexity, so do the applications that they serve. HPC and distributed-area computing (DAC) (e.g. grid and cloud) users are looking increasingly toward workflow solutions to orchestrate their complex application coupling, pre- and post-processing needs To gain insight and a more quantitative understanding of a workflow’s performance our method includes not only the capture of traditional provenance information, but also the capture and integration of system environment metrics helping to give context and explanation for a workflow’s execution. In this paper, we describe IPPD’s provenance management solution (ProvEn) andmore » its hybrid data store combining both of these data provenance perspectives.« less

Use of genomic recursions and algorithm for proven and young animals for single-step genomic BLUP analyses--a simulation study.

PubMed

Fragomeni, B O; Lourenco, D A L; Tsuruta, S; Masuda, Y; Aguilar, I; Misztal, I

2015-10-01

The purpose of this study was to examine accuracy of genomic selection via single-step genomic BLUP (ssGBLUP) when the direct inverse of the genomic relationship matrix (G) is replaced by an approximation of G(-1) based on recursions for young genotyped animals conditioned on a subset of proven animals, termed algorithm for proven and young animals (APY). With the efficient implementation, this algorithm has a cubic cost with proven animals and linear with young animals. Ten duplicate data sets mimicking a dairy cattle population were simulated. In a first scenario, genomic information for 20k genotyped bulls, divided in 7k proven and 13k young bulls, was generated for each replicate. In a second scenario, 5k genotyped cows with phenotypes were included in the analysis as young animals. Accuracies (average for the 10 replicates) in regular EBV were 0.72 and 0.34 for proven and young animals, respectively. When genomic information was included, they increased to 0.75 and 0.50. No differences between genomic EBV (GEBV) obtained with the regular G(-1) and the approximated G(-1) via the recursive method were observed. In the second scenario, accuracies in GEBV (0.76, 0.51 and 0.59 for proven bulls, young males and young females, respectively) were also higher than those in EBV (0.72, 0.35 and 0.49). Again, no differences between GEBV with regular G(-1) and with recursions were observed. With the recursive algorithm, the number of iterations to achieve convergence was reduced from 227 to 206 in the first scenario and from 232 to 209 in the second scenario. Cows can be treated as young animals in APY without reducing the accuracy. The proposed algorithm can be implemented to reduce computing costs and to overcome current limitations on the number of genotyped animals in the ssGBLUP method. © 2015 Blackwell Verlag GmbH.

Using Sediment Provenance to Study Ice Streams in the Weddell Sea Embayment of Antarctica

NASA Astrophysics Data System (ADS)

Hemming, S. R.; Williams, T.; Boswell, S.; Licht, K.; Agrios, L.; Brachfeld, S. A.; van de Flierdt, T.; Kuhn, G.; Hillenbrand, C. D.; Zhai, X.

2016-12-01

The geochemical and geochronological fingerprint of rock debris eroded and carried by ice streams may be used to identify the provenance of iceberg-rafted debris (IRD) in the marine sediment record. During deglacial times it has been shown that there is an increase in IRD accumulation in marine sediments underlying the western limb of the Weddell Gyre. We seek to find the provenance of this IRD, identify the ice streams contributing to the IRD load, and interpret the geographic sequence of ice sheet retreat in the Weddell Sea embayment for the last three deglaciations. In December 2014 we conducted fieldwork to collect samples of rock and sediment debris carried by three of the major ice streams draining the Weddell Sea embayment: the Foundation Ice Stream, the Academy Glacier, and the Recovery Glacier. We sampled both modern moraines at the edges of the ice streams and older till on hillsides next to the ice streams. In addition to rocks representing the geology of local outcrops, we found that each of the three ice streams carries a characteristic set of erratic lithologies from further upstream, giving clues to the geology hidden under the ice sheet. Downstream, subglacial till and proximal glaciomarine sediment from existing core sites located at the edge of the Filchner and Ronne Ice Shelves, collected on past expeditions of the RV Polarstern, characterize the geochemical and geochronological fingerprint along ice flow lines extending from the ice streams. Finally, two deep-water RV Polarstern sites contain a continuous record of IRD sourced from the set of Weddell embayment ice streams over the last few glacial cycles. Here we present new 40Ar/39Ar hornblende and biotite thermochronological data from individual mineral grains, K-Ar from the silt fraction, and U-Pb zircon geochronology from the onshore tills and offshore sediments. Using this data we will discuss provenance matching between the IRD and the ice streams, and the possibilities for using

Thermodesulfobacterium geofontis sp. nov., a hyperthermophilic, sulfate-reducing bacterium isolated from Obsidian Pool, Yellowstone National Park

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hamilton-Brehm, Scott D.; Gibson, Robert A.; Green, Stefan J.

2013-01-24

A novel sulfate-reducing bacterium designated OPF15T was isolated from Obsidian Pool, Yellowstone National Park, Wyoming. The phylogeny of 16S rRNA and functional genes (dsrAB) placed the organism within the family Thermodesulfobacteriaceae. The organism displayed hyperthermophilic temperature requirements for growth with a range of 70 90 C and an optimum of 83 C. Optimal pH was around 6.5 7.0 and the organism required the presence of H2 or formate as an electron donor and CO2 as a carbon source. Electron acceptors supporting growth included sulfate, thiosulfate, and elemental sulfur. Lactate, acetate, pyruvate, benzoate, oleic acid, and ethanol did not serve asmore » electron donors. Membrane lipid analysis revealed diacyl glycerols and acyl/ether glycerols which ranged from C14:0 to C20:0. Alkyl chains present in acyl/ether and diether glycerol lipids ranged from C16:0 to C18:0. Straight, iso- and anteiso-configurations were found for all lipid types. The presence of OPF15T was also shown to increase cellulose consumption during co-cultivation with Caldicellulosiruptor obsidiansis, a fermentative, cellulolytic extreme thermophile isolated from the same environment. On the basis of phylogenetic, phenotypic, and structural analyses, Thermodesulfobacterium geofontis sp. nov. is proposed as a new species with OPF15T representing the type strain.« less

Thermodesulfobacterium geofontis sp. nov., a hyperthermophilic, sulfate-reducing bacterium isolated from Obsidian Pool, Yellowstone National Park.

PubMed

Hamilton-Brehm, Scott D; Gibson, Robert A; Green, Stefan J; Hopmans, Ellen C; Schouten, Stefan; van der Meer, Marcel T J; Shields, John P; Damsté, Jaap S S; Elkins, James G

2013-03-01

A novel sulfate-reducing bacterium designated OPF15(T) was isolated from Obsidian Pool, Yellowstone National Park, Wyoming. The phylogeny of 16S rRNA and functional genes (dsrAB) placed the organism within the family Thermodesulfobacteriaceae. The organism displayed hyperthermophilic temperature requirements for growth with a range of 70-90 °C and an optimum of 83 °C. Optimal pH was around 6.5-7.0 and the organism required the presence of H2 or formate as an electron donor and CO2 as a carbon source. Electron acceptors supporting growth included sulfate, thiosulfate, and elemental sulfur. Lactate, acetate, pyruvate, benzoate, oleic acid, and ethanol did not serve as electron donors. Membrane lipid analysis revealed diacyl glycerols and acyl/ether glycerols which ranged from C14:0 to C20:0. Alkyl chains present in acyl/ether and diether glycerol lipids ranged from C16:0 to C18:0. Straight, iso- and anteiso-configurations were found for all lipid types. The presence of OPF15(T) was also shown to increase cellulose consumption during co-cultivation with Caldicellulosiruptor obsidiansis, a fermentative, cellulolytic extreme thermophile isolated from the same environment. On the basis of phylogenetic, phenotypic, and structural analyses, Thermodesulfobacterium geofontis sp. nov. is proposed as a new species with OPF15(T) representing the type strain.

LA-ICP-MS as Tool for Provenance Analyses in Arctic Marine Sediments

NASA Astrophysics Data System (ADS)

Wildau, Antje; Garbe-Schönberg, Dieter

2015-04-01

The hydraulic transport of sediments is a major geological process in terrestrial and marine systems and is responsible for the loss, redistribution and accumulation of minerals. Provenance analyses are a powerful tool for assessing the origin and dispersion of material in ancient and modern fluvial and marine sediments. Provenance-specific heavy minerals (e.g., zircon, rutile, tourmaline) can therefore be used to provide valuable information on the formation of ore deposits (placer deposits), and the reconstruction of paleogeography, hydrology, climate conditions and developments. The application of provenances analyses for the latter reason is of specific interest, since there is need for research on the progressing climate change, and heavy minerals represent good proxies for the evaluation of recent and past changes in the climate. The study of these fine particles provides information about potential regional or long distance transport paths, glacial / ice drift and current flows, freezing and melting events as well as depositional centers for the released sediments. Classic methods applied for provenance analyses are mapping of the presence / absence of diagnostic minerals, their grain size distribution, modal mineralogy and the analysis of variations in ratio of two or more heavy minerals. Electron microprobe has been established to discover changes in mineral chemistry of individual mineral phases, which can indicate fluctuations or differences in the provenance. All these methods bear the potential of high errors that lower the validity of the provenance analyses. These are for example the misclassification of mineral species due to undistinguishable optical properties or the limitations in the detection / variations of trace elements using the election microprobe. For this case study, marine sediments from the Arctic Ocean have been selected to test if LA-ICP-MS can be established as a key technique for precise and reliable provenance analyses. The Laptev

Wood structural differences between northern and southern beech provenances growing at a moderate site.

PubMed

Eilmann, B; Sterck, F; Wegner, L; de Vries, S M G; von Arx, G; Mohren, G M J; den Ouden, J; Sass-Klaassen, U

2014-08-01

Planting provenances originating from southern to northern locations has been discussed as a strategy to speed up species migration and mitigate negative effects of climate change on forest stability and productivity. Especially for drought-susceptible species such as European beech (Fagus sylvatica L.), the introduction of drought-tolerant provenances from the south could be an option. Yet, beech has been found to respond plastically to environmental conditions, suggesting that the climate on the plantation site might be more important for tree growth than the genetic predisposition of potentially drought-adapted provenances. In this study, we compared the radial growth, wood-anatomical traits and leaf phenology of four beech provenances originating from southern (Bulgaria, France) and northern locations (Sweden, the Netherlands) and planted in a provenance trial in the Netherlands. The distribution of precipitation largely differs between the sites of origin. The northern provenances experience a maximum and the southern provenances experience a minimum of rainfall in summer. We compared tree productivity and the anatomy of the water-conducting system for the period from 2000 to 2010, including the drought year 2003. In addition, tree mortality and the timing of leaf unfolding in spring were analysed for the years 2001, 2007 and 2012. Comparison of these traits in the four beech provenances indicates the influence of genetic predisposition and local environmental factors on the performance of these provenances under moderate site conditions. Variation in radial growth was controlled by environment, although the growth level slightly differed due to genetic background. The Bulgarian provenance had an efficient water-conducting system which was moreover unaffected by the drought in 2003, pointing to a high ability of this provenance to cope well with dry conditions. In addition, the Bulgarian provenance showed up as most productive in terms of height and radial

Provenance of aeolian sands in the Hetao Plain, northwestern China

NASA Astrophysics Data System (ADS)

Yang, Xingchen; Cai, Maotang; Ye, Peisheng; Ye, Mengni; Li, Chenglu; Wu, Hang; Lu, Jing; Wang, Tao; Zhao, Zhirong; Luzhou, Yangfan; Liu, Chao

2018-06-01

Patches of aeolian sand are distributed throughout the Hetao Plain, which pose threats to farming and agriculture. Identification of the provenance of the aeolian sands may help with efforts to alleviate ecological stress in Inner Mongolia and in the paleoenvironmental interpretation of sandy sequences. This study uses geochemical data to determine the provenance of aeolian sands from the Hetao Plain. Provenance discrimination diagrams revealed that the aeolian sands were mainly derived from mixed source felsic granites and granodiorites, which have undergone weak sedimentary recycling. The chemical index of alteration and A-CN-K data indicated that the aeolian sediments were transported over a short distance. Comparison of trace element and rare earth element (REE) ratios of the aeolian sands with rock samples from potential source areas has revealed that aeolian sand deposits in the Hetao Plain were mainly derived from Sertengshan and Yellow River sediments. The Langshan and Ordos Plateau may represent additional sand sources for the Hetao Plain.

Adaptation of eastern whitepine provenances to planting sites

Treesearch

Maurice E., Jr. Demeritt; Peter W. Garrett

1996-01-01

Eastern white pine provenances from the extreme limits of the natural range of this species are changing from above- and below-average stability to average stability for height growth with increasing age. The regression method is useful for evaluating the stability of provenance to planting sites. The same general conclusions are reached for the performance at...

Provenance variation in Eucalyptus camaldulensis Dehnh. in California

Treesearch

B.M. Emery; F. Thomas Ledig

1987-01-01

In California, the Lake Albacutya provenance of river red gum was clearly superior in volume growth to 22 other provenances collected throughout the range of the species in Australia. It had at least 2.5 times the volume of the plantation mean at 5.5 years, consistent with its performance in other countries with Mediterranean climates like California's. Other...

Computational provenance in hydrologic science: a snow mapping example.

PubMed

Dozier, Jeff; Frew, James

2009-03-13

Computational provenance--a record of the antecedents and processing history of digital information--is key to properly documenting computer-based scientific research. To support investigations in hydrologic science, we produce the daily fractional snow-covered area from NASA's moderate-resolution imaging spectroradiometer (MODIS). From the MODIS reflectance data in seven wavelengths, we estimate the fraction of each 500 m pixel that snow covers. The daily products have data gaps and errors because of cloud cover and sensor viewing geometry, so we interpolate and smooth to produce our best estimate of the daily snow cover. To manage the data, we have developed the Earth System Science Server (ES3), a software environment for data-intensive Earth science, with unique capabilities for automatically and transparently capturing and managing the provenance of arbitrary computations. Transparent acquisition avoids the scientists having to express their computations in specific languages or schemas in order for provenance to be acquired and maintained. ES3 models provenance as relationships between processes and their input and output files. It is particularly suited to capturing the provenance of an evolving algorithm whose components span multiple languages and execution environments.

Linked data and provenance in biological data webs.

PubMed

Zhao, Jun; Miles, Alistair; Klyne, Graham; Shotton, David

2009-03-01

The Web is now being used as a platform for publishing and linking life science data. The Web's linking architecture can be exploited to join heterogeneous data from multiple sources. However, as data are frequently being updated in a decentralized environment, provenance information becomes critical to providing reliable and trustworthy services to scientists. This article presents design patterns for representing and querying provenance information relating to mapping links between heterogeneous data from sources in the domain of functional genomics. We illustrate the use of named resource description framework (RDF) graphs at different levels of granularity to make provenance assertions about linked data, and demonstrate that these assertions are sufficient to support requirements including data currency, integrity, evidential support and historical queries.

Drought effects on root and needle terpenoid content of a coastal and an interior Douglas fir provenance.

PubMed

Kleiber, Anita; Duan, Qiuxiao; Jansen, Kirstin; Verena Junker, Laura; Kammerer, Bernd; Rennenberg, Heinz; Ensminger, Ingo; Gessler, Arthur; Kreuzwieser, Jürgen

2017-12-01

Douglas fir (Pseudotsuga menziesii) is a conifer species that stores large amounts of terpenoids, mainly monoterpenoids in resin ducts of various tissues. The effects of drought on stored leaf terpenoid concentrations in trees are scarcely studied and published data are partially controversial, since reduced, unaffected or elevated terpenoid contents due to drought have been reported. Even less is known on the effect of drought on root terpenoids. In the present work, we investigated the effect of reduced water availability on the terpenoid content in roots and needles of Douglas fir seedlings. Two contrasting Douglas fir provenances were studied: an interior provenance (var. glauca) with assumed higher drought resistance, and a coastal provenance (var. menziesii) with assumed lower drought resistance. We tested the hypothesis that both provenances show specific patterns of stored terpenoids and that the patterns will change in response to drought in both, needles and roots. We further expected stronger changes in the less drought tolerant coastal provenance. For this purpose, we performed an experiment under controlled conditions, in which the trees were exposed to moderate and severe drought stress. According to our expectations, the study revealed clear provenance-specific terpenoid patterns in needles. However, such patterns were not detected in the roots. Drought slightly increased the needle terpenoid contents of the coastal but not of the interior provenance. We also observed increased terpenoid abundance mainly in roots of the moderately stressed coastal provenance. Overall, from the observed provenance-specific reactions with increased terpenoid levels in trees of the coastal origin in response to drought, we conclude on functions of terpenoids for abiotic stress tolerance that might be fulfilled by other, constitutively expressed mechanisms in drought-adapted interior provenances. © The Author 2017. Published by Oxford University Press. All rights

A Simple Model for the Viscosity of Rhyolites as a Function of Temperature, Pressure and Water Content: Implications for Obsidian Flow Emplacement

NASA Astrophysics Data System (ADS)

Whittington, A. G.; Romine, W. L.

2014-12-01

Understanding the dynamics of rhyolitic conduits and lava flows, requires precise knowledge of how viscosity (η) varies with temperature (T), pressure (P) and volatile content (X). In order to address the paucity of viscosity data for high-silica rhyolite at low water contents, which represent water saturation at near-surface conditions, we made 245 viscosity measurements on Mono Craters (California) rhyolites containing between 0.01 and 1.1 wt.% H2O, at temperatures between 796 and 1774 K using parallel plate and concentric cylinder methods at atmospheric pressure. We then developed and calibrated a new empirical model for the log of the viscosity of rhyolitic melts, where non-linear variations due to temperature and water content are nested within a linear dependence of log η on P. The model was fitted to a total of 563 data points: our 245 new data, 255 published data from rhyolites across a wide P-T-X space, and 63 data on haplogranitic and granitic melts under high P-T conditions. Statistically insignificant parameters were eliminated from the model in an effort to increase parsimony and the final model is simple enough for use in numerical models of conduit or lava flow dynamics: log η = -5.142+(13080-2982log⁡(w+0.229))/(T-(98.9-175.9 log⁡(w+0.229)))- P(0.0007-0.76/T ) where η is in Pa s, w is water content in wt.%, P is in MPa and T is in K. The root mean square deviation (rmsd) between the model predictions and the 563 data points used in calibration is 0.39 log units. Experimental constraints have led previously to spurious correlations between P, T, X and η in viscosity data sets, so that predictive models may struggle to correctly resolve the individual effects of P, T and X, and especially their cross-correlations. The increasing water solubility with depth inside a simple isothermal sheet of obsidian suggests that viscosity should decrease by ~1 order of magnitude at ~20m depth and by ~2 orders of magnitude at ~100m depth. If equilibrium water

Twenty-year performance in a white oak provenance test

Treesearch

Philip A. O' Connor

2005-01-01

In 1983 a limited-range provenance test for white oak (Quercus alba L.) was established at the Starve Hollow SRA in cooperation with the North Central Forest Experiment Station. The planting was made up of half-sib progeny of nine families/provenances representing six states from Mississippi through Minnesota.

Complete genome sequences of Geobacillus sp. Y412MC52, a xylan-degrading strain isolated from obsidian hot spring in Yellowstone National Park.

PubMed

Brumm, Phillip; Land, Miriam L; Hauser, Loren J; Jeffries, Cynthia D; Chang, Yun-Juan; Mead, David A

2015-01-01

Geobacillus sp. Y412MC52 was isolated from Obsidian Hot Spring, Yellowstone National Park, Montana, USA under permit from the National Park Service. The genome was sequenced, assembled, and annotated by the DOE Joint Genome Institute and deposited at the NCBI in December 2011 (CP002835). Based on 16S rRNA genes and average nucleotide identity, Geobacillus sp. Y412MC52 and the related Geobacillus sp. Y412MC61 appear to be members of a new species of Geobacillus. The genome of Geobacillus sp. Y412MC52 consists of one circular chromosome of 3,628,883 bp, an average G + C content of 52 % and one circular plasmid of 45,057 bp and an average G + C content of 45 %. Y412MC52 possesses arabinan, arabinoglucuronoxylan, and aromatic acid degradation clusters for degradation of hemicellulose from biomass. Transport and utilization clusters are also present for other carbohydrates including starch, cellobiose, and α- and β-galactooligosaccharides.

Complete genome sequences of Geobacillus sp. Y412MC52, a xylan-degrading strain isolated from obsidian hot spring in Yellowstone National Park

DOE PAGES

Brumm, Phillip; Land, Miriam L.; Hauser, Loren J.; ...

2015-10-19

We isolated geobacillus sp. Y412MC52 from Obsidian Hot Spring, Yellowstone National Park, Montana, USA under permit from the National Park Service. The genome was sequenced, assembled, and annotated by the DOE Joint Genome Institute and deposited at the NCBI in December 2011 (CP002835). Based on 16S rRNA genes and average nucleotide identity, Geobacillus sp. Y412MC52 and the related Geobacillus sp. Y412MC61 appear to be members of a new species of Geobacillus. Moreover, te genome of Geobacillus sp. Y412MC52 consists of one circular chromosome of 3,628,883 bp, an average G + C content of 52 % and one circular plasmid ofmore » 45,057 bp and an average G + C content of 45 %. Y412MC52 possesses arabinan, arabinoglucuronoxylan, and aromatic acid degradation clusters for degradation of hemicellulose from biomass. Finally, we present transport and utilization clusters for other carbohydrates including starch, cellobiose, and - and -galactooligosaccharides.« less

Complete genome sequences of Geobacillus sp. Y412MC52, a xylan-degrading strain isolated from obsidian hot spring in Yellowstone National Park

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brumm, Phillip; Land, Miriam L.; Hauser, Loren J.

We isolated geobacillus sp. Y412MC52 from Obsidian Hot Spring, Yellowstone National Park, Montana, USA under permit from the National Park Service. The genome was sequenced, assembled, and annotated by the DOE Joint Genome Institute and deposited at the NCBI in December 2011 (CP002835). Based on 16S rRNA genes and average nucleotide identity, Geobacillus sp. Y412MC52 and the related Geobacillus sp. Y412MC61 appear to be members of a new species of Geobacillus. Moreover, te genome of Geobacillus sp. Y412MC52 consists of one circular chromosome of 3,628,883 bp, an average G + C content of 52 % and one circular plasmid ofmore » 45,057 bp and an average G + C content of 45 %. Y412MC52 possesses arabinan, arabinoglucuronoxylan, and aromatic acid degradation clusters for degradation of hemicellulose from biomass. Finally, we present transport and utilization clusters for other carbohydrates including starch, cellobiose, and - and -galactooligosaccharides.« less

Using Domain Requirements to Achieve Science-Oriented Provenance

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stephan, Eric G; Halter, Todd D; Critchlow, Terence J

2010-06-18

Using Domain Requirements to Achieve Science-Oriented Provenance Eric Stephan1 Todd Halter1 Terence Critchlow1 Paulo Pinheiro da Silva2 Leonardo Salayandia2 1 Pacific Northwest National Laboratory, Richland WA, USA 2 University of Texas at El Paso, El Paso TX, USA Abstract. The US Department of Energy (DOE) Atmospheric Radi- ation Measurement Program (ARM) is adopting the use of formalized provenance to support observational data products produced by ARM operations and relied upon by researchers. Because of the diversity of needs in the climate community provenance will need to be conveyed in a domain-oriented context. This paper explores a use case where semanticmore » abstract workflows (SAW) are employed as a means to filter, aggregate, and contextually describe the historical events responsible for the ARM data product the scientist is relying upon.« less

Climate Data Provenance Tracking for Just-In-Time Computation

NASA Astrophysics Data System (ADS)

Fries, S.; Nadeau, D.; Doutriaux, C.; Williams, D. N.

2016-12-01

The "Climate Data Management System" (CDMS) was created in 1996 as part of the Climate Data Analysis Tools suite of software. It provides a simple interface into a wide variety of climate data formats, and creates NetCDF CF-Compliant files. It leverages the NumPy framework for high performance computation, and is an all-in-one IO and computation package. CDMS has been extended to track manipulations of data, and trace that data all the way to the original raw data. This extension tracks provenance about data, and enables just-in-time (JIT) computation. The provenance for each variable is packaged as part of the variable's metadata, and can be used to validate data processing and computations (by repeating the analysis on the original data). It also allows for an alternate solution for sharing analyzed data; if the bandwidth for a transfer is prohibitively expensive, the provenance serialization can be passed in a much more compact format and the analysis rerun on the input data. Data provenance tracking in CDMS enables far-reaching and impactful functionalities, permitting implementation of many analytical paradigms.

Bridging the Gap between Scientific Data Producers and Consumers: A Provenance Approach

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stephan, Eric G.; Pinheiro da Silva, Paulo; Kleese van Dam, Kerstin

2013-06-03

Despite the methodical and painstaking efforts made by scientists to record their scientific findings and protocols, a knowledge gap problem continues to persist today between producers of scientific results and consumers because technology is performing the exchange of data as opposed to scientists making direct contact. Provenance is a means to formalize how this knowledge is transferred. However, for it to be meaningful to scientists, the provenance research community needs continued contributions from the scientific community to extend and leverage provenance-based vocabularies and technology from the provenance community. Going forward the provenance community must also be vigilant to meet scalabilitymore » needs of data intensive science« less

Identification of provenance rocks based on EPMA analyses of heavy minerals

NASA Astrophysics Data System (ADS)

Shimizu, M.; Sano, N.; Ueki, T.; Yonaga, Y.; Yasue, K. I.; Masakazu, N.

2017-12-01

Information on mountain building is significant in the field of geological disposal of high-level radioactive waste, because this affects long-term stability in groundwater flow system. Provenance analysis is one of effective approaches for understanding building process of mountains. Chemical compositions of heavy minerals, as well as their chronological data, can be an index for identification of provenance rocks. The accurate identification requires the measurement of as many grains as possible. In order to achieve an efficient provenance analysis, we developed a method for quick identification of heavy minerals using an Electron Probe Micro Analyzer (EPMA). In this method, heavy mineral grains extracted from a sample were aligned on a glass slide and mounted in a resin. Concentration of 28 elements was measured for 300-500 grains per sample using EPMA. To measure as many grains as possible, we prioritized swiftness of measurement over precision, configuring measurement time of about 3.5 minutes for each grain. Identification of heavy minerals was based on their chemical composition. We developed a Microsoft® Excel® spread sheet input criteria of mineral identification using a typical range of chemical compositions for each mineral. The grains of <80 wt.% or >110 wt.% total were rejected. The criteria of mineral identification were revised through the comparison between mineral identification by optical microscopy and chemical compositions of grains classified as "unknown minerals". Provenance rocks can be identified based on abundance ratio of identified minerals. If no significant difference of the abundance ratio was found among source rocks, chemical composition of specific minerals was used as another index. This method was applied to the sediments of some regions in Japan where provenance rocks had lithological variations but similar formation ages. Consequently, the provenance rocks were identified based on chemical compositions of heavy minerals

Features of Scots pine radial growth in conditions of provenance trial.

NASA Astrophysics Data System (ADS)

Kuzmin, Sergey; Kuzmina, Nina

2013-04-01

Provenance trial of Scots pine in Boguchany forestry of Krasnoyarsk krai is conducted on two different soils - dark-grey loam forest soil and sod-podzol sandy soil. Complex of negative factors for plant growth and development appears in dry conditions of sandy soil. It could results in decrease of resistance to diseases. Sandy soils in different climatic zones have such common traits as low absorbing capacity, poorness of elemental nutrition, low microbiological activity and moisture capacity, very high water permeability. But Scots pine trees growing in such conditions could have certain advantages and perspectives of use. In the scope of climate change (global warming) the study of Scots pine growth on sandy soil become urgent because of more frequent appearance of dry seasons. Purpose of the work is revelation of radial growth features of Scots pine with different origin in dry conditions of sandy soil and assessment of external factors influence. The main feature of radial growth of majority of studied pine provenances in conditions of sandy soil is presence of significant variation of increment with distinct decline in 25-years old with loss of tree rings in a number of cases. The reason of it is complex of factors: deficit of June precipitation and next following outbreak of fungal disease. Found «frost rings» for all trees of studied clymatypes in 1992 are the consequence of temperature decline from May 21 to June 2 - from 23 down to 2 degree Celsius. Perspective climatypes with biggest radial increments and least sensitivity to fungal disease were revealed. Eniseysk and Vikhorevka (from Krasnoyarsk krai and Irkutsk oblast)provenances of pine have the biggest radial increments, the least sensitivity to Cenangium dieback and smallest increments decline. These climatypes are in the group of perspective provenances and in present time they are recommended for wide trial in the region for future use in plantation forest growing. Kandalaksha (Murmansk oblast

Black and red granites in the Egyptian Antiquity Museum of Turin. A minero-petrographic and provenance study.

NASA Astrophysics Data System (ADS)

Serra, M.; Borghi, A.; Vaggelli, G.; D'Amicone, E.; Vigna, L.

2009-04-01

The University of Turin, in cooperation with the Egyptian Antiquity Museum, has recently undertaken several projects aimed at developing a scientific approach to the analysis of ancient Egyptian finds. In particular, a straightforward project to investigate the stony handcrafts preserved in the statuary rooms started in 2006 to obtain their systematic petrographic classification and their possible geological sources. The main intent of the project was to understand the provenance of the materials used in Pharaonic period, setting the base for the identification of the ancient quarry sites and for a correct interpretation of the extraction and working techniques, in order to provide fundamental information about economical and social development of Egyptian civilization through historical times. The choice to focus attention on black and red granites came from the statement of the percentage relevance (40 of the 54 sculptures actually exposed) of these materials in the statuary rooms. Moreover, especially for black granites, the need of detailed minero-petrographic analysis arose from the difficulty in making a macroscopic classification of the fine-grained dark-coloured rock varieties. Therefore, five black granite statues, belonging to the Drovetti collection were sampled in a micro-invasive way: three sculptures of goddess Sekhmet (cat. 260, 251, 247), the statue of Ramses II (cat. 1380) and the statue of goddess Hathor (cat. 694). The choice to analyse even three of the twenty-one statues of goddess Sekhmet (cat. 247, cat. 251, cat. 260), originally located in the same Egyptian temple but ichnographically different, derived from the need of answering the archaeological questions about their provenance. On the other hand, the opportunity of studying the fine-grained black rocks used for the sculptures of goddess Hathor (cat. 694) and of Ramses II in Majesty (cat. 1380), symbol of the Egyptian museum of Turin, provided the opportunity to analyse and classify the

Geochemical Identification in Sediment Provenance during Glacial/Interglacial Period: the Southern Drake Passage

NASA Astrophysics Data System (ADS)

Park, Y. K.; Jung, J.; Lee, J. I.; Yoo, K. C.; Kim, J. W.

2016-12-01

Clay mineralogy and crystal size distribution in marine sediment is used for the indication of a sediment provenance and climatic changes. Objective of this study is to trace the sediment provenances in the Southern Drake Passage with clay mineralogy, elemental composition and crystal size distributions (CSDs) of clay mineral. In the present study, X-Ray Diffractometer (XRD) measurements showed that smectite, illite and chlorite are dominant phases. The semi-quantitative analysis showed that the relatively proportion of smectite is 50 - 60% in interglacial stage, 30 - 39% in glacial stage. Comparing with REE data, sediments supply was influenced by Weddell sea current and Antarctic Circumpolar Current (ACC). Moreover, elemental composition and microscopic analysis of smectites were carried by Transmission Electron Microscopy (TEM) and energy dispersive spectroscopy (EDS). The composition of smectite clay minerals were plotted on the tertiary diagram indicating that Smectite in Drake Passage was transported from three provenances: South Shetland island, east and west side of Antarctic peninsula during glacial - interglacial period. The CSDs of smectite also indicate the various source of smectite. The variation in the values of α (mean thickness) and β2 (shape or uniformity of the distribution) of smectite grain size will be discussed in terms of the sediment provenance.

Potential of Sr isotopic analysis in ceramic provenance studies: Characterisation of Chinese stonewares

NASA Astrophysics Data System (ADS)

Li, Bao-Ping; Zhao, Jian-Xin; Greig, Alan; Collerson, Kenneth D.; Zhuo, Zhen-Xi; Feng, Yue-Xin

2005-11-01

We compare the trace element and Sr isotopic compositions of stoneware bodies made in Yaozhou and Jizhou to characterise these Chinese archaeological ceramics and examine the potential of Sr isotopes in provenance studies. Element concentrations determined by ICP-MS achieve distinct characterisation for Jizhou samples due to their restricted variation, yet had limited success with Yaozhou wares because of their large variability. In contrast, 87Sr/86Sr ratios in Yaozhou samples have a very small variation and are all significantly lower than those of Jizhou samples, which show a large variation and cannot be well characterised with Sr isotopes. Geochemical interpretation reveals that 87Sr/86Sr ratios will have greater potential to characterise ceramics made of low Rb/Sr materials such as kaolin clay, yet will show larger variations in ceramics made of high Rb/Sr materials such as porcelain stone.

Representing annotation compositionality and provenance for the Semantic Web

PubMed Central

2013-01-01

Background Though the annotation of digital artifacts with metadata has a long history, the bulk of that work focuses on the association of single terms or concepts to single targets. As annotation efforts expand to capture more complex information, annotations will need to be able to refer to knowledge structures formally defined in terms of more atomic knowledge structures. Existing provenance efforts in the Semantic Web domain primarily focus on tracking provenance at the level of whole triples and do not provide enough detail to track how individual triple elements of annotations were derived from triple elements of other annotations. Results We present a task- and domain-independent ontological model for capturing annotations and their linkage to their denoted knowledge representations, which can be singular concepts or more complex sets of assertions. We have implemented this model as an extension of the Information Artifact Ontology in OWL and made it freely available, and we show how it can be integrated with several prominent annotation and provenance models. We present several application areas for the model, ranging from linguistic annotation of text to the annotation of disease-associations in genome sequences. Conclusions With this model, progressively more complex annotations can be composed from other annotations, and the provenance of compositional annotations can be represented at the annotation level or at the level of individual elements of the RDF triples composing the annotations. This in turn allows for progressively richer annotations to be constructed from previous annotation efforts, the precise provenance recording of which facilitates evidence-based inference and error tracking. PMID:24268021

Experimental dehydration of natural obsidian and estimation of DH2O at low water contents

NASA Technical Reports Server (NTRS)

Jambon, A.; Zhang, Y.; Stolper, E. M.

1992-01-01

Water diffusion experiments were carried out by dehydrating rhyolitic obsidian from Valles Caldera (New Mexico, USA) at 510-980 degrees C. The starting glass wafers contained approximately 0.114 wt% total water, lower than any glasses previously investigated for water diffusion. Weight loss due to dehydration was measured as a function of experiment duration, which permits determination of mean bulk water diffusivity, mean Dw. These diffusivities are in the range of 2.6 to 18 X 10(-14) m2/s and can be fit with the following Arrhenius equation: ln mean Dw (m2/s) = -(25.10 +/- 1.29) - (46,480 +/- 11,400) (J/mol) / RT, except for two replicate runs at 510 degrees C which give mean Dw values much lower than that defined by the above equation. When interpreted according to a model of water speciation in which molecular H2O is the diffusing species with concentration-independent diffusivity while OH units do not contribute to the transport but react to provide H2O, the data (except for the 510 degrees C data) are in agreement with extrapolation from previous results and hence extend the previous data base and provide a test of the applicability of the model to very low water contents. Mean bulk water diffusivities are about two orders of magnitude less than molecular H2O diffusivities because the fraction of molecular H2O out of total water is very small at 0.114 wt% total water and less. The 510 degrees C experimental results can be interpreted as due to slow kinetics of OH to H2O interconversion at low temperatures.

Experimental dehydration of natural obsidian and estimation of DH2O at low water contents.

PubMed

Jambon, A; Zhang, Y; Stolper, E M

1992-01-01

Water diffusion experiments were carried out by dehydrating rhyolitic obsidian from Valles Caldera (New Mexico, USA) at 510-980 degrees C. The starting glass wafers contained approximately 0.114 wt% total water, lower than any glasses previously investigated for water diffusion. Weight loss due to dehydration was measured as a function of experiment duration, which permits determination of mean bulk water diffusivity, mean Dw. These diffusivities are in the range of 2.6 to 18 X 10(-14) m2/s and can be fit with the following Arrhenius equation: ln mean Dw (m2/s) = -(25.10 +/- 1.29) - (46,480 +/- 11,400) (J/mol) / RT, except for two replicate runs at 510 degrees C which give mean Dw values much lower than that defined by the above equation. When interpreted according to a model of water speciation in which molecular H2O is the diffusing species with concentration-independent diffusivity while OH units do not contribute to the transport but react to provide H2O, the data (except for the 510 degrees C data) are in agreement with extrapolation from previous results and hence extend the previous data base and provide a test of the applicability of the model to very low water contents. Mean bulk water diffusivities are about two orders of magnitude less than molecular H2O diffusivities because the fraction of molecular H2O out of total water is very small at 0.114 wt% total water and less. The 510 degrees C experimental results can be interpreted as due to slow kinetics of OH to H2O interconversion at low temperatures.

Impact of summer drought on isoprenoid emissions and carbon sink of three Scots pine provenances

PubMed Central

Lüpke, M.; Leuchner, M.; Steinbrecher, R.; Menzel, A.

2016-01-01

Scots pine (Pinus sylvestris L.) provenances cover broad ecological amplitudes. In a greenhouse study, we investigated the impact of drought stress and rewetting on gas exchange for three provenances (Italy: Emilia Romagna; Spain: Alto Ebro; Germany: East-German lowlands) of 2-year old Scots pine seedlings. CO2, water vapour and isoprenoid exchange of stressed and control trees were quantified with a four-chamber dynamic-enclosure system in the controlled environment of a climate chamber. The three provenances showed distinct isoprenoid emission patterns and were classified into a non-Δ3-carene, with either high α-/β-pinene or β-myrcene fraction, and a Δ3-carene dominated type. Isoprenoid emission rates, net-photosynthesis and transpiration were reduced during summer drought stress and significantly recovered after rewetting. A seasonal increase of isoprenoid emission rates towards autumn was observed for all control groups. Compared with the German provenance, the Spanish and Italian provenances revealed higher isoprenoid emission rates and more plastic responses to drought stress and seasonal development, which points to a local adaptation to climate. As a result of drought, net carbon uptake and transpiration of trees was reduced, but recovered after rewetting. We conclude from our study that Scots pine isoprenoid emission is more variable than expected and sensitive to drought periods, likely impacting regional air chemistry. Thus, a provenance-specific emission assessment accounting for reduced emission during prolonged (summer) drought is recommend for setting up biogenic volatile organic compound emission inventories used in air quality models. PMID:27591438

Impact of summer drought on isoprenoid emissions and carbon sink of three Scots pine provenances.

PubMed

Lüpke, M; Leuchner, M; Steinbrecher, R; Menzel, A

2016-11-01

Scots pine (Pinus sylvestris L.) provenances cover broad ecological amplitudes. In a greenhouse study, we investigated the impact of drought stress and rewetting on gas exchange for three provenances (Italy: Emilia Romagna; Spain: Alto Ebro; Germany: East-German lowlands) of 2-year old Scots pine seedlings. CO 2 , water vapour and isoprenoid exchange of stressed and control trees were quantified with a four-chamber dynamic-enclosure system in the controlled environment of a climate chamber. The three provenances showed distinct isoprenoid emission patterns and were classified into a non-Δ 3 -carene, with either high α-/β-pinene or β-myrcene fraction, and a Δ 3 -carene dominated type. Isoprenoid emission rates, net-photosynthesis and transpiration were reduced during summer drought stress and significantly recovered after rewetting. A seasonal increase of isoprenoid emission rates towards autumn was observed for all control groups. Compared with the German provenance, the Spanish and Italian provenances revealed higher isoprenoid emission rates and more plastic responses to drought stress and seasonal development, which points to a local adaptation to climate. As a result of drought, net carbon uptake and transpiration of trees was reduced, but recovered after rewetting. We conclude from our study that Scots pine isoprenoid emission is more variable than expected and sensitive to drought periods, likely impacting regional air chemistry. Thus, a provenance-specific emission assessment accounting for reduced emission during prolonged (summer) drought is recommend for setting up biogenic volatile organic compound emission inventories used in air quality models. © The Author 2016. Published by Oxford University Press.

Caldicellulosiruptor obsidiansis sp. nov., an anaerobic, extremely thermophilic, cellulolytic bacterium isolated from Obsidian Pool, Yellowstone National Park.

PubMed

Hamilton-Brehm, Scott D; Mosher, Jennifer J; Vishnivetskaya, Tatiana; Podar, Mircea; Carroll, Sue; Allman, Steve; Phelps, Tommy J; Keller, Martin; Elkins, James G

2010-02-01

A novel, obligately anaerobic, extremely thermophilic, cellulolytic bacterium, designated OB47(T), was isolated from Obsidian Pool, Yellowstone National Park, WY. The isolate was a nonmotile, non-spore-forming, Gram-positive rod approximately 2 microm long by 0.2 microm wide and grew at temperatures between 55 and 85 degrees C, with the optimum at 78 degrees C. The pH range for growth was 6.0 to 8.0, with values of near 7.0 being optimal. Growth on cellobiose produced the fastest specific growth rate at 0.75 h(-1). The organism also displayed fermentative growth on glucose, maltose, arabinose, fructose, starch, lactose, mannose, sucrose, galactose, xylose, arabinogalactan, Avicel, xylan, filter paper, processed cardboard, pectin, dilute acid-pretreated switchgrass, and Populus. OB47(T) was unable to grow on mannitol, fucose, lignin, Gelrite, acetate, glycerol, ribose, sorbitol, carboxymethylcellulose, and casein. Yeast extract stimulated growth, and thiosulfate, sulfate, nitrate, and sulfur were not reduced. Fermentation end products were mainly acetate, H2, and CO2, although lactate and ethanol were produced in 5-liter batch fermentations. The G+C content of the DNA was 35 mol%, and sequence analysis of the small subunit rRNA gene placed OB47(T) within the genus Caldicellulosiruptor. Based on its phylogenetic and phenotypic properties, the isolate is proposed to be designated Caldicellulosiruptor obsidiansis sp. nov. and OB47 is the type strain (ATCC BAA-2073).

Caldicellulosiruptor obsidiansis sp. nov., an Anaerobic, Extremely Thermophilic, Cellulolytic Bacterium Isolated from Obsidian Pool, Yellowstone National Park▿

PubMed Central

Hamilton-Brehm, Scott D.; Mosher, Jennifer J.; Vishnivetskaya, Tatiana; Podar, Mircea; Carroll, Sue; Allman, Steve; Phelps, Tommy J.; Keller, Martin; Elkins, James G.

2010-01-01

A novel, obligately anaerobic, extremely thermophilic, cellulolytic bacterium, designated OB47T, was isolated from Obsidian Pool, Yellowstone National Park, WY. The isolate was a nonmotile, non-spore-forming, Gram-positive rod approximately 2 μm long by 0.2 μm wide and grew at temperatures between 55 and 85°C, with the optimum at 78°C. The pH range for growth was 6.0 to 8.0, with values of near 7.0 being optimal. Growth on cellobiose produced the fastest specific growth rate at 0.75 h−1. The organism also displayed fermentative growth on glucose, maltose, arabinose, fructose, starch, lactose, mannose, sucrose, galactose, xylose, arabinogalactan, Avicel, xylan, filter paper, processed cardboard, pectin, dilute acid-pretreated switchgrass, and Populus. OB47T was unable to grow on mannitol, fucose, lignin, Gelrite, acetate, glycerol, ribose, sorbitol, carboxymethylcellulose, and casein. Yeast extract stimulated growth, and thiosulfate, sulfate, nitrate, and sulfur were not reduced. Fermentation end products were mainly acetate, H2, and CO2, although lactate and ethanol were produced in 5-liter batch fermentations. The G+C content of the DNA was 35 mol%, and sequence analysis of the small subunit rRNA gene placed OB47T within the genus Caldicellulosiruptor. Based on its phylogenetic and phenotypic properties, the isolate is proposed to be designated Caldicellulosiruptor obsidiansis sp. nov. and OB47 is the type strain (ATCC BAA-2073). PMID:20023107

Comparing the variation of needle and wood terpenoids in Scots pine provenances.

PubMed

Manninen, A M; Tarhanen, S; Vuorinen, M; Kainulaine, P

2002-01-01

We determined variation in both the concentration and composition of terpenoids in needles and wood within nine Scots pine (Pinus sylvestris) provenances. Seedlings of different provenances representing a 1200-km N-S transect from Estonia to northern Finland were cultivated in Suonenjoki nursery field, central Finland, for seven years. Growth of seedlings and the number of vertical resin ducts in wood were also determined. alpha-Pinene and 3-carene were the major monoterpenes both in the needles and wood. The total monoterpene concentration was about five times higher in the needles than in the wood. A strong positive correlation was found between proportional quantities of several terpenes of the needles and wood, particularly for 3-carene, sabinene, and terpinolene. The needles contained both labdane-type and tricyclic resin acids, whereas the wood contained only tricyclic ones. The wood had a four times higher tricyclic resin acid concentration than the needles. The highest total monoterpene concentration in the needles and in the wood occurred in the most northern Muonio provenance and in the most southern Saaremaa provenance plants, respectively. The amount of high 3-carene genotype trees decreased among the northern provenances. The wood of the most northern Muonio provenance showed the lowest total resin acid concentration, but provenance did not affect total tricyclic resin acids in the needles. Korpilahti provenance trees from central Finland had the best growth in height. In addition, Korpilahti and Ruokolahti provenance trees showed largest radial growth of stem and smallest number of vertical resin ducts. The results suggest that especially the proportional quantity of 3-carene in the needles could be used in estimating the amount of this compound in the wood and vice versa.

Applying the Karma Provenance tool to NASA's AMSR-E Data Production Stream

NASA Astrophysics Data System (ADS)

Ramachandran, R.; Conover, H.; Regner, K.; Movva, S.; Goodman, H. M.; Pale, B.; Purohit, P.; Sun, Y.

2010-12-01

Current procedures for capturing and disseminating provenance, or data product lineage, are limited in both what is captured and how it is disseminated to the science community. For example, the Advanced Microwave Scanning Radiometer for the Earth Observing System (AMSR-E) Science Investigator-led Processing System (SIPS) generates Level 2 and Level 3 data products for a variety of geophysical parameters. Data provenance and quality information for these data sets is either very general (e.g., user guides, a list of anomalous data receipt and processing conditions over the life of the missions) or difficult to access or interpret (e.g., quality flags embedded in the data, production history files not easily available to users). Karma is a provenance collection and representation tool designed and developed for data driven workflows such as the productions streams used to produce EOS standard products. Karma records uniform and usable provenance metadata independent of the processing system while minimizing both the modification burden on the processing system and the overall performance overhead. Karma collects both the process and data provenance. The process provenance contains information about the workflow execution and the associated algorithm invocations. The data provenance captures metadata about the derivation history of the data product, including algorithms used and input data sources transformed to generate it. As part of an ongoing NASA funded project, Karma is being integrated into the AMSR-E SIPS data production streams. Metadata gathered by the tool will be presented to the data consumers as provenance graphs, which are useful in validating the workflows and determining the quality of the data product. This presentation will discuss design and implementation issues faced while incorporating a provenance tool into a structured data production flow. Prototype results will also be presented in this talk.

Results of 1938 IUFRO Scotch pine provenance test in New York

Treesearch

Ernst J. Schreiner; E. W. Littlefield; E. J. Eliason

1961-01-01

The International Union of Forest Research Organizations (IUFRO) has sponsored several international provenance tests. This is a report on the practical aspects of an IUFRO provenance test with Scotch pine in New York.

Neurocognitive functions and brain atrophy after proven neuroborreliosis: a case-control study.

PubMed

Schmidt, Holger; Djukic, Marija; Jung, Klaus; Holzgraefe, Manfred; Dechent, Peter; von Steinbüchel, Nicole; Blocher, Joachim; Eiffert, Helmut; Schmidt-Samoa, Carsten

2015-08-19

Patients often report neurocognitive difficulties after neuroborreliosis (NB). The frequency and extent of cognitive problems in European patients have been studied incompletely. Sixty patients received a neurological and neuropsychological work-up 6 months or longer after treatment for proven NB. Quality of life, psychiatric symptom load, and brain atrophy were measured. All results were compared with a group of 30 healthy control persons adapted for age, gender and education being serologically negative for Borrelia burgdorferi senso latu. A cognitive sum score and a global sum score including cognitive, psychological results and quality of life data was calculated for both groups. Patients after NB showed a lower (i.e. more impaired) score on the Scripps Neurological rating scale (SNRS), but the observed neurological deficits were generally mild (mean ± SD: 97.1 ± 4.7 vs. 99.1 ± 2.4, p = 0.02). The mean neuropsychological domain results of the NB group were all within the normal range. However, a lower performance was found for the frontal executive function z-values (mean ± SD -0.29 ± 0.60 vs. 0.09 ± 0.60; p = 0.0059) of NB patients. Comparing the global sum score (mean ± SD 11.3 ± 4.2 NB vs. 14.3 ± 2.9 control , p = 0.001) and the cognitive sum score of the NB group with those of the control group (mean ± SD -0.15 ± 0.42 NB vs. 0.08 ± 0.31 control , p = 0.0079), both differences were statistically different. The frequencies of impaired global sum scores and those of the pathological cognitive sum scores (p = 0.07) did not differ statistically. No significant differences were found for health-related quality of life (hrQoL), sleep, psychiatric symptom load, or brain atrophy. The mean cognitive functions of patients after proven NB were in the normal range. However, we were able to demonstrate a lower performance for the domain of frontal executive functions, for the mean cognitive sum score and the global sum score as a sign of subtle but measurable

Connecting Provenance with Semantic Descriptions in the NASA Earth Exchange (NEX)

NASA Astrophysics Data System (ADS)

Votava, P.; Michaelis, A.; Nemani, R. R.

2012-12-01

NASA Earth Exchange (NEX) is a data, modeling and knowledge collaboratory that houses NASA satellite data, climate data and ancillary data where a focused community may come together to share modeling and analysis codes, scientific results, knowledge and expertise on a centralized platform. Some of the main goals of NEX are transparency and repeatability and to that extent we have been adding components that enable tracking of provenance of both scientific processes and datasets produced by these processes. As scientific processes become more complex, they are often developed collaboratively and it becomes increasingly important for the research team to be able to track the development of the process and the datasets that are produced along the way. Additionally, we want to be able to link the processes and the datasets developed on NEX to an existing information and knowledge, so that the users can query and compare the provenance of any dataset or process with regard to the component-specific attributes such as data quality, geographic location, related publications, user comments and annotations etc. We have developed several ontologies that describe datasets and workflow components available on NEX using the OWL ontology language as well as a simple ontology that provides linking mechanism to the collected provenance information. The provenance is captured in two ways - we utilize existing provenance infrastructure of VisTrails, which is used as a workflow engine on NEX, and we extend the captured provenance using the PROV data model expressed through the PROV-O ontology. We do this in order to link and query the provenance easier in the context of the existing NEX information and knowledge. The captured provenance graph is processed and stored using RDFlib with MySQL backend that can be queried using either RDFLib or SPARQL. As a concrete example, we show how this information is captured during anomaly detection process in large satellite datasets.

Uranium mobility during interaction of rhyolitic obsidian, perlite and felsite with alkaline carbonate solution: T = 120° C, P = 210 kg/cm2

USGS Publications Warehouse

Zielinski, Robert A.

1979-01-01

Well-characterized samples of rhyolitic obsidian, perlite and felsite from a single lava flow are leached of U by alkaline oxidizing solutions under open-system conditions. Pressure, temperature, flow rate and solution composition are held constant in order to evaluate the relative importance of differences in surface area and crystallinity. Under the experimental conditions U removal from crushed glassy samples proceeds by a mechanism of glass dissolution in which U and silica are dissolved in approximately equal weight fractions. The rate of U removal from crushed glassy samples increases with decreasing average grain size (surface area). Initial rapid loss of a small component (≈ 2.5%) of the total U from crushed felsite. followed by much slower U loss, reflects variable rates of attack of numerous uranium sites. The fractions of U removed during the experiment ranged from 3.2% (felsite) to 27% (perlite). An empirical method for evaluating the relative rate of U loss from contemporaneous volcanic rocks is presented which incorporates leaching results and rock permeability data.

Autumn frost hardiness in Norway spruce plus tree progeny and trees of the local and transferred provenances in central Sweden.

PubMed

Hannerz, Mats; Westin, Johan

2005-09-01

Reforestation with provenances from locations remote from the planting site (transferred provenances) or the progeny of trees of local provenances selected for superior form and vigor (plus trees) offer alternative means to increase yield over that obtained by the use of seed from unselected trees of the local provenance. Under Swedish conditions, Norway spruce (Picea abies (L.) Karst.) of certain transferred provenances generally has an advantage in productivity relative to the local provenance comparable to that of progeny of plus trees. The aim of this study was to explore the extent to which productivity gains achieved by provenance transfer or the use of plus tree progeny are associated with reductions in autumn frost hardiness, relative to that of trees of the local provenance. In a field trial with 19-year-old trees in central Sweden, bud hardiness was tested on four occasions during the autumn of 2002. Trees of the local provenance were compared with trees of a south Swedish provenance originating 3 degrees of latitude to the south, a Belarusian provenance and the progeny of plus trees of local origin. The Belarusian provenance was the least hardy and the local provenance the most hardy, with plus tree progeny and the south Swedish provenance being intermediate in hardiness. Both the Belarusian provenance and the plus tree progeny were significantly taller than trees of the other populations. Within provenances, tree height was negatively correlated with autumn frost hardiness. Among the plus tree progeny, however, no such correlation between tree height and autumn frost hardiness was found. It is concluded that although the gain in productivity achieved by provenance transfer from Belarus was comparable to that achieved by using the progeny of plus trees of the local provenance, the use of trees of the Belarus provenance involved an increased risk of autumn frost damage because of later hardening.

Inorganic raw materials economy and provenance of chipped industry in some stone age sites of northern and central Italy.

PubMed

Bietti, Amilcare; Boschian, Giovanni; Crisci, Gino Mirocle; Danese, Ermanno; De Francesco, Anna Maria; Dini, Mario; Fontana, Federica; Giampietri, Alessandra; Grifoni, Renata; Guerreschi, Antonio; Liagre, Jérémie; Negrino, Fabio; Radi, Giovanna; Tozzi, Carlo; Tykot, Robert

2004-06-01

An opportunistic and local choice of raw materials is typically attested in the Lower and Middle Paleolithic industries throughout Italy. The quality of the raw material usually affected the flaking technology and quality of the products. In the Upper Paleolithic and the Mesolithic, raw material procurement strategies were more complex. Flint was exploited both locally, in areas where abundant outcrops of raw materials were available (such as the Lessini mountains), and in distant localities, after which it was transported or exchanged over medium/long distances. Different routes of exchange were thus followed in the various periods; good reconstruction of these routes have been provided by a study of the Garfagnana sites in Northern Tuscany, and the Mesolithic deposit of Mondeval de Sora (Dolomites). An interesting example of a Late Upper Paleolithic flint quarry and workshop were found in Abruzzo, in the San Bartolomeo shelter. The extended trade of obsidian from Lipari, Palmarola and Sardinia to the Italian Peninsula is attested in the Neolithic, with some differences concerning the age and different areas.

Automated Generation of Technical Documentation and Provenance for Reproducible Research

NASA Astrophysics Data System (ADS)

Jolly, B.; Medyckyj-Scott, D.; Spiekermann, R.; Ausseil, A. G.

2017-12-01

Data provenance and detailed technical documentation are essential components of high-quality reproducible research, however are often only partially addressed during a research project. Recording and maintaining this information during the course of a project can be a difficult task to get right as it is a time consuming and often boring process for the researchers involved. As a result, provenance records and technical documentation provided alongside research results can be incomplete or may not be completely consistent with the actual processes followed. While providing access to the data and code used by the original researchers goes some way toward enabling reproducibility, this does not count as, or replace, data provenance. Additionally, this can be a poor substitute for good technical documentation and is often more difficult for a third-party to understand - particularly if they do not understand the programming language(s) used. We present and discuss a tool built from the ground up for the production of well-documented and reproducible spatial datasets that are created by applying a series of classification rules to a number of input layers. The internal model of the classification rules required by the tool to process the input data is exploited to also produce technical documentation and provenance records with minimal additional user input. Available provenance records that accompany input datasets are incorporated into those that describe the current process. As a result, each time a new iteration of the analysis is performed the documentation and provenance records are re-generated to provide an accurate description of the exact process followed. The generic nature of this tool, and the lessons learned during its creation, have wider application to other fields where the production of derivative datasets must be done in an open, defensible, and reproducible way.

Lowering the Barrier to Reproducible Research by Publishing Provenance from Common Analytical Tools

NASA Astrophysics Data System (ADS)

Jones, M. B.; Slaughter, P.; Walker, L.; Jones, C. S.; Missier, P.; Ludäscher, B.; Cao, Y.; McPhillips, T.; Schildhauer, M.

2015-12-01

Scientific provenance describes the authenticity, origin, and processing history of research products and promotes scientific transparency by detailing the steps in computational workflows that produce derived products. These products include papers, findings, input data, software products to perform computations, and derived data and visualizations. The geosciences community values this type of information, and, at least theoretically, strives to base conclusions on computationally replicable findings. In practice, capturing detailed provenance is laborious and thus has been a low priority; beyond a lab notebook describing methods and results, few researchers capture and preserve detailed records of scientific provenance. We have built tools for capturing and publishing provenance that integrate into analytical environments that are in widespread use by geoscientists (R and Matlab). These tools lower the barrier to provenance generation by automating capture of critical information as researchers prepare data for analysis, develop, test, and execute models, and create visualizations. The 'recordr' library in R and the `matlab-dataone` library in Matlab provide shared functions to capture provenance with minimal changes to normal working procedures. Researchers can capture both scripted and interactive sessions, tag and manage these executions as they iterate over analyses, and then prune and publish provenance metadata and derived products to the DataONE federation of archival repositories. Provenance traces conform to the ProvONE model extension of W3C PROV, enabling interoperability across tools and languages. The capture system supports fine-grained versioning of science products and provenance traces. By assigning global identifiers such as DOIs, reseachers can cite the computational processes used to reach findings. And, finally, DataONE has built a web portal to search, browse, and clearly display provenance relationships between input data, the software

The problem of site variation within red pine provenance experiments

Treesearch

Mark J. Holst

1966-01-01

In spite of care taken in the selection of site and experimental design of provenance experiments, site heterogenity within the experimental area may be more complex than was anticipated when the experiment was established. The present paper describes a problem of this nature encountered in a red pine (Pinus resinosa Ait.) provenance experiment at...

A coastal and an interior Douglas fir provenance exhibit different metabolic strategies to deal with drought stress.

PubMed

Du, Baoguo; Jansen, Kirstin; Kleiber, Anita; Eiblmeier, Monika; Kammerer, Bernd; Ensminger, Ingo; Gessler, Arthur; Rennenberg, Heinz; Kreuzwieser, Jürgen

2016-02-01

Drought is a major environmental stress affecting growth and vitality of forest ecosystems. In the present study, foliar nitrogen (N) and carbon (C) metabolism of two Douglas fir (Pseudotsuga menziesii) provenances with assumed different drought tolerance were investigated. We worked with 1-year-old seedlings of the interior provenance Fehr Lake (FEHR) originating from a dry environment and the coastal provenance Snoqualmie (SNO) from a more humid origin. Total C and N, structural N and the concentrations of soluble protein, total amino acids (TAAs) and individual amino acids as well as the relative abundance of polar, low-molecular-weight metabolites including antioxidants were determined in current-year needles exposed either to 42 days of drought or to 42 days drought plus 14 days of rewatering. The seedlings reacted in a provenance-specific manner to drought stress. Coastal provenance SNO showed considerably increased contents of TAAs, which were caused by increased abundance of the quantitatively most important amino acids arginine, ornithine and lysine. Additionally, the polyamine putrescine accumulated exclusively in drought-stressed trees of this provenance. In contrast, the interior provenance FEHR showed the opposite response, i.e., drastically reduced concentrations of these amino acids. However, FEHR showed considerably increased contents of pyruvate-derived and aromatic amino acids, and also higher drought-induced levels of the antioxidants ascorbate and α-tocopherol. In response to drought, both provenances produced large amounts of carbohydrates, such as glucose and fructose, most likely as osmolytes that can readily be metabolized for protection against osmotic stress. We conclude that FEHR and SNO cope with drought stress in a provenance-specific manner: the coastal provenance SNO was mainly synthesizing N-based osmolytes, a reaction not observed in the interior provenance FEHR; instead, the latter increased the levels of scavengers of reactive

Quantifying the provenance of aeolian sediments using multiple composite fingerprints

NASA Astrophysics Data System (ADS)

Liu, Benli; Niu, Qinghe; Qu, Jianjun; Zu, Ruiping

2016-09-01

We introduce a new fingerprinting method that uses multiple composite fingerprints for studies of aeolian sediment provenance. We used this method to quantify the provenance of sediments on both sides of the Qinghai-Tibetan Railway (QTR) in the Cuona Lake section of the Tibetan Plateau (TP), in an environment characterized by aeolian and fluvial interactions. The method involves repeatedly solving a linear mixing model based on mass conservation; the model is not limited to spatial scale or transport types and uses all the tracer groups that passed the range check, Kruskal-Wallis H-test, and a strict analytical solution screening. The proportional estimates that result from using different composite fingerprints are highly variable; however, the average of these fingerprints has a greater accuracy and certainty than any single fingerprint. The results show that sand from the lake beach, hilly surface, and gullies contribute, respectively, 48%, 31% and 21% to the western railway sediments and 43%, 33% and 24% to the eastern railway sediments. The difference between contributions from various sources on either side of the railway, which may increase in the future, was clearly related to variations in local transport characteristics, a conclusion that is supported by grain size analysis. The construction of the QTR changed the local cycling of materials, and the difference in provenance between the sediments that are separated by the railway reflects the changed sedimentary conditions on either side of the railway. The effectiveness of this method suggests that it will be useful in other studies of aeolian sediments.

40Ar- 39Ar dating of detrital muscovite in provenance investigations: a case study from the Adelaide Rift Complex, South Australia

NASA Astrophysics Data System (ADS)

Haines, Peter W.; Turner, Simon P.; Kelley, Simon P.; Wartho, Jo-Anne; Sherlock, Sarah C.

2004-11-01

Detrital zircon ages are commonly used to investigate sediment provenance and supply routes. Here, we explore the advantages of employing multiple, complimentary techniques via a case study of the Neoproterozoic and Cambrian of the Adelaide Rift Complex, South Australia. Detrital muscovite Ar-Ar ages are presented from stratigraphic units, or equivalents, that have previously been the subject of U-Pb detrital zircon dating, and, in some cases, whole-rock Sm-Nd isotope studies. The zircon age ranges and whole-rock Sm-Nd isotope data suggest that early Neoproterozoic sediments from near the base of the Adelaide Rift Complex comprise a mixture of detritus derived from the adjacent Gawler Craton (Palaeoproterozoic to earliest Mesoproterozoic) and overlying Gairdner flood basalts. In contrast, detrital muscovites from this level have a broad scatter of Mesoproterozoic infrared (IR) laser total fusion Ar-Ar ages, while UV laser traverses indicate that the age spread reflects partial resetting by multiple heating events, rather than a mixture of sources. Younger Neoproterozoic sediments document replacement of the Gawler Craton by the more distant Musgrave and/or Albany-Fraser Orogens as the main provenance. The Cambrian Kanmantoo Group marks an abrupt change in depositional style and a new sediment source. The Kanmantoo Group have older Nd model ages than underlying strata, yet are dominated by near to deposition-aged (˜500-650 Ma) detrital zircons and muscovites, suggesting rapid cooling and exhumation of a tectonically active provenance region. Although this source remains uncertain, evidence points towards the distant Pan-African orogenic belts. Deposition in the Adelaide Rift Complex was terminated in the late Early Cambrian by the Delamerian Orogeny, and the results of previous detrital mineral dating studies from the Lachlan Fold Belt to the east are consistent with at least partial derivation of these sediments from reworked upper Adelaide Rift Complex (Kanmantoo

Provenance and recycling of Arabian desert sand

NASA Astrophysics Data System (ADS)

Garzanti, Eduardo; Vermeesch, Pieter; Andò, Sergio; Vezzoli, Giovanni; Valagussa, Manuel; Allen, Kate; Kadi, Khalid; Al-Juboury, Ali

2013-04-01

This study seeks to determine the ultimate origin of aeolian sand in Arabian deserts by high-resolution petrographic and heavy-mineral techniques combined with zircon U-Pb geochronology. Point-counting is used here as the sole method by which unbiased volume percentages of heavy minerals can be obtained. A comprehensive analysis of river and wadi sands from the Red Sea to the Bitlis-Zagros orogen allowed us to characterize all potential sediment sources, and thus to quantitatively constrain provenance of Arabian dune fields. Two main types of aeolian sand can be distinguished. Quartzose sands with very poor heavy-mineral suites including zircon occupy most of the region comprising the Great Nafud and Rub' al-Khali Sand Seas, and are largely recycled from thick Lower Palaeozoic quartzarenites with very minor first-cycle contributions from Precambrian basement, Mesozoic carbonate rocks, or Neogene basalts. Instead, carbonaticlastic sands with richer lithic and heavy-mineral populations characterize coastal dunes bordering the Arabian Gulf from the Jafurah Sand Sea of Saudi Arabia to the United Arab Emirates. The similarity with detritus carried by the axial Tigris-Euphrates system and by transverse rivers draining carbonate rocks of the Zagros indicates that Arabian coastal dunes largely consist of far-travelled sand, deposited on the exposed floor of the Gulf during Pleistocene lowstands and blown inland by dominant Shamal northerly winds. A dataset of detrital zircon U-Pb ages measured on twelve dune samples and two Lower Palaeozoic sandstones yielded fourteen identical age spectra. The age distributions all show a major Neoproterozoic peak corresponding to the Pan-African magmatic and tectonic events by which the Arabian Shield was assembled, with minor late Palaeoproterozoic and Neoarchean peaks. A similar U-Pb signature characterizes also Jafurah dune sands, suggesting that zircons are dominantly derived from interior Arabia, possibly deflated from the Wadi al

Provenance and recycling of Arabian desert sand

NASA Astrophysics Data System (ADS)

Garzanti, Eduardo; Vermeesch, Pieter; Andò, Sergio; Vezzoli, Giovanni; Valagussa, Manuel; Allen, Kate; Kadi, Khalid A.; Al-Juboury, Ali I. A.

2013-05-01

This study seeks to determine the ultimate origin of aeolian sand in Arabian deserts by high-resolution petrographic and heavy-mineral techniques combined with zircon U-Pb geochronology. Point-counting is used here as the sole method by which unbiased volume percentages of heavy minerals can be obtained. A comprehensive analysis of river and wadi sands from the Red Sea to the Bitlis-Zagros orogen allowed us to characterize all potential sediment sources, and thus to quantitatively constrain provenance of Arabian dune fields. Two main types of aeolian sand can be distinguished. Quartzose sands with very poor heavy-mineral suites including zircon occupy most of the region comprising the Great Nafud and Rub' al-Khali Sand Seas, and are largely recycled from thick Lower Palaeozoic quartzarenites with very minor first-cycle contributions from Precambrian basement, Mesozoic carbonate rocks, or Neogene basalts. Instead, carbonaticlastic sands with richer lithic and heavy-mineral populations characterize coastal dunes bordering the Arabian Gulf from the Jafurah Sand Sea of Saudi Arabia to the United Arab Emirates. The similarity with detritus carried by the axial Tigris-Euphrates system and by transverse rivers draining carbonate rocks of the Zagros indicates that Arabian coastal dunes largely consist of far-travelled sand, deposited on the exposed floor of the Gulf during Pleistocene lowstands and blown inland by dominant Shamal northerly winds. A dataset of detrital zircon U-Pb ages measured on twelve dune samples and two Lower Palaeozoic sandstones yielded fourteen identical age spectra. The age distributions all show a major Neoproterozoic peak corresponding to the Pan-African magmatic and tectonic events by which the Arabian Shield was assembled, with minor late Palaeoproterozoic and Neoarchean peaks. A similar U-Pb signature characterizes also Jafurah dune sands, suggesting that zircons are dominantly derived from interior Arabia, possibly deflated from the Wadi al

Provenance Data in Social Media

DTIC Science & Technology

2013-04-01

B A R B I E R • F E N G • G U N D E C H A • L I U P R O...least h -hops (a positive integer constant) away from terminals. For user B , the Provenance Data Framework proposed in Section 4.1, accurately identifies...Anderson, R. May, and B . Anderson. Infectious Diseases of Humans: Dynamics and Control, volume 28. Wiley Online Library, 1992. 31, 32 [7] G. Barbier and H

Provenance for Runtime Workflow Steering and Validation in Computational Seismology

NASA Astrophysics Data System (ADS)

Spinuso, A.; Krischer, L.; Krause, A.; Filgueira, R.; Magnoni, F.; Muraleedharan, V.; David, M.

2014-12-01

Provenance systems may be offered by modern workflow engines to collect metadata about the data transformations at runtime. If combined with effective visualisation and monitoring interfaces, these provenance recordings can speed up the validation process of an experiment, suggesting interactive or automated interventions with immediate effects on the lifecycle of a workflow run. For instance, in the field of computational seismology, if we consider research applications performing long lasting cross correlation analysis and high resolution simulations, the immediate notification of logical errors and the rapid access to intermediate results, can produce reactions which foster a more efficient progress of the research. These applications are often executed in secured and sophisticated HPC and HTC infrastructures, highlighting the need for a comprehensive framework that facilitates the extraction of fine grained provenance and the development of provenance aware components, leveraging the scalability characteristics of the adopted workflow engines, whose enactment can be mapped to different technologies (MPI, Storm clusters, etc). This work looks at the adoption of W3C-PROV concepts and data model within a user driven processing and validation framework for seismic data, supporting also computational and data management steering. Validation needs to balance automation with user intervention, considering the scientist as part of the archiving process. Therefore, the provenance data is enriched with community-specific metadata vocabularies and control messages, making an experiment reproducible and its description consistent with the community understandings. Moreover, it can contain user defined terms and annotations. The current implementation of the system is supported by the EU-Funded VERCE (http://verce.eu). It provides, as well as the provenance generation mechanisms, a prototypal browser-based user interface and a web API built on top of a NoSQL storage

Provenance study of ancient Chinese Yaozhou porcelain by neutron activation analysis

NASA Astrophysics Data System (ADS)

Li, G. X.; Y Gao, Z.; Li, R. W.; Zhao, W. J.; Xie, J. Z.; Feng, S. L.; Zhuo, Z. X.; Y Fan, D.; Zhang, Y.; Cai, Z. F.; Liu, H.

2003-09-01

This paper reports our study of the provenance of ancient Chinese Yaozhou porcelain. The content of 29 elements in the Yaozhou porcelain samples was measured by neutron activation analysis (NAA). The NAA data were further analysed using fuzzy cluster analysis to obtain the trend fuzzy cluster diagrams. These samples with different glaze colour, ranging over more than 700 years, were fired in different kilns. Our analysis indicates the relatively concentrated distribution of the sources of the raw material for the Yaozhou porcelain body samples. They can be classified into two independent periods, i.e. the Tang (AD 618-907) and the Five Dynasties (AD 907-960) period, and the Song (AD 960-1279) and Jin (AD 1115-1234) period. Our analysis also indicates that the sources of the raw material for the ancient Yaozhou porcelain glaze samples are quite scattered and those for the black glaze in the Tang Dynasty are very concentrated. The sources of the raw material for the celadon glaze and the white glaze in the Tang Dynasty are widely distributed and those for the celadon glaze in the Song Dynasty are close to those of the bluish white glaze in the Jin Dynasty, and they are very concentrated. The sources of the raw material for the porcelain glazes cover those of the porcelain bodies.

Nitrogen partitioning in oak leaves depends on species, provenance, climate conditions and soil type.

PubMed

Hu, B; Simon, J; Kuster, T M; Arend, M; Siegwolf, R; Rennenberg, H

2013-01-01

Climate-tolerant tree species and/or provenances have to be selected to ensure the high productivity of managed forests in Central Europe under the prognosticated climate changes. For this purpose, we studied the responses of saplings from three oak species (i.e. Quercus robur, Q. petraea and Q. pubescens) and provenances of different climatic origin (i.e. low or high rainfall, low or high temperature habitats) with regard to leaf nitrogen (N) composition as a measure of N nutrition. Saplings were grown in model ecosystems on either calcareous or acidic soil and subjected to one of four treatments (control, drought, air warming or a combination of drought and air warming). Across species, oak N metabolism responded to the influence of drought and/or air warming with an increase in leaf amino acid N concentration at the expense of structural N. Moreover, provenances or species from drier habitats were more tolerant to the climate conditions applied, as indicated by an increase in amino acid N (comparing species) or soluble protein N (comparing provenances within a species). Furthermore, amino acid N concentrations of oak leaves were significantly higher on calcareous compared to acidic soil. From these results, it can be concluded that seeds from provenances or species originating from drier habitats and - if available - from calcareous soil types may provide a superior seed source for future forest establishment. © 2012 German Botanical Society and The Royal Botanical Society of the Netherlands.

Geoscience Australia's enterprise application of provenance standards and systems for physical and digital objects

NASA Astrophysics Data System (ADS)

Kemp, C.; Car, N. J.

2016-12-01

Geoscience Australia (GA) is a government agency that provides advice on the geology and geography of Australia. It is the custodian of many digital and physical datasets of national significance. For several years GA has been implementing an enterprise approach to provenance management. The goal for transparency and reproducibility for all of GA's information products; an objective supported at the highest levels and explicitly listed in its Science Principles. Currently GA is finalising a set of enterprise tools to assist with provenance management and rolling out provenance reporting to different science areas. GA has adopted or developed: provenance storage systems; provenance collection code libraries (for use within automated systems); reporting interfaces (for manual use) and provenance representation capability within legacy catalogues. Using these tools within GA's science areas involves modelling the scenario first and then assessing whether the area has its data managed in such a way that allows links to data within provenance to be resolvable in perpetuity. We don't just want to represent provenance (demonstrating transparency), we want to access data via provenance (allowing for reproducibility). A subtask of GA's current work is to link physical samples to information products (datasets, reports, papers) by uniquely and persistently identifying samples using International GeoSample Numbers and then modelling automated & manual laboratory workflows and associated tasks, such as data delivery to corporate databases using the W3C's PROV Data Model. We use PROV DM throughout our modelling and systems. We are also moving to deliver all sample and digital dataset metadata across the agency in the Web Ontology Language (OWL) and exposing it via Linked Data methods in order to allow Semantic Web querying of multiple systems allowing provenance to be leveraged using as a single method and query point. Through the Science First Transformation Program GA is

Provenance testing at Michigan Technological University

Treesearch

Robert L. Sajdak

1970-01-01

The location of M.T.U. in the Keweenaw Peninsula of Upper Michigan provides some unique advantages and disadvantages in provenance testing and tree improvement research. Extremes in summer and winter temperatures are uncommon because of the moderating effect of Lake Superior. Near the Lake we have about 140 frost-free days while inland the frost-free season is only 80...

The importance of XRD analysis in provenance and palaeoenvironmental studies of the Piedras de Afilar Formation, Neoproterozoic of Uruguay

NASA Astrophysics Data System (ADS)

Pamoukaghlian, K.; Poiré, D. G.; Gaucher, C.; Uriz, N.; Cingolani, C.; Frigeiro, P.

2009-04-01

The Piedras de Afilar Formation crops out in the southeast part of Uruguay, forming part of the Tandilia Terrane (sensu Bossi et al. 2005). Pamoukaghlian et al. (2006) and Gaucher et al. (2008) have published δ13C, δ18O and U/Pb SHRIMP results, which indicate a Neoproterozoic age for this formation. The palaeoenvironment has been defined as a shallow marine platform based on the presence of interference ripples, hummocky and mega-hummocky cross-stratification. X-ray diffraction (XRD) analyses help to better constrain the palaeoenvironment: the presence of chlorite/smectite found in black shales, suggest a reducing environment, and abundant illite indicates a cold to temperate climate. Provenance studies have been undertaken that utilise a combination of detailed palaeocurrent measurements, petrographic descriptions, XRD analyses, and geochemical isotopic analyses, including U/Pb SHRIMP determinations. Mineral compositional diagrams for sandstones suggest a stable cratonic provenance. Palaeocurrents are mainly from the NNE, indicating a provenance from the cratonic areas of the Tandilia Terrane. The illite crystal index indicates diagenetic to low-metamorphic conditions for the sequence; this is important to confirm that the identified minerals are authigenic. Clay minerals identified by XRD analysis of sandstones from the siliciclastic member are illite (80 - 90%), kaolinite (5 - 10%), and chlorite (5 - 10%). This is consistent with a provenance from the cratonic areas (quartz-feldspar dominated rock types). Isotopic analyses have been undertaken to provide better constraints on the tectonic setting. U/Pb SHRIMP ages for the youngest zircons are 990 Ma (Gaucher et al. 2008), and the basal granite (Granito de la Paz) is 2056 ± 11 Ma (Hartmann et al. 2001), suggesting a provenance from the Archaean basement for the Piedras de Afilar Formation, like its counterparts in the Rio de la Plata Craton. References Bossi, J., Piñeyro, D., Cingolani, C. (2005). El l

Provenance Representation in the Global Change Information System (GCIS)

NASA Technical Reports Server (NTRS)

Tilmes, Curt

2012-01-01

Global climate change is a topic that has become very controversial despite strong support within the scientific community. It is common for agencies releasing information about climate change to be served with Freedom of Information Act (FOIA) requests for everything that led to that conclusion. Capturing and presenting the provenance, linking to the research papers, data sets, models, analyses, observation instruments and satellites, etc. supporting key findings has the potential to mitigate skepticism in this domain. The U.S. Global Change Research Program (USGCRP) is now coordinating the production of a National Climate Assessment (NCA) that presents our best understanding of global change. We are now developing a Global Change Information System (GCIS) that will present the content of that report and its provenance, including the scientific support for the findings of the assessment. We are using an approach that will present this information both through a human accessible web site as well as a machine readable interface for automated mining of the provenance graph. We plan to use the developing W3C PROV Data Model and Ontology for this system.

Provenance study through analysis of microstructural characteristics using an optical microscope and scanning electron microscopy for Goryeo celadon excavated from the seabed.

PubMed

Min-su, Han

2013-08-01

This paper aims at identifying the provenance of Goryeo celadons by understanding its microstructural characteristics, such as particles, blisters, forms and amount of pores, and the presence of crystal formation, bodies, and glazes and its boundary, using an optical microscope and scanning electron microscopy (SEM). The analysis of the reproduced samples shows that the glazed layer of the sherd fired at higher temperatures has lower viscosity and therefore it encourages the blisters to be combined together and the layer to become more transparent. In addition, the result showed that the vitrification and melting process of clay minerals such as feldspars and quartzs on the bodies was accelerated for those samples. To factor such characteristics of the microstructure and apply it to the sherds, the samples could be divided into six categories based on status, such as small particles with many small pores or mainly large and small circular pores in the bodies, only a limited number of varied sized blisters in the glazes, and a few blisters and needle-shaped crystals on the boundary surface. In conclusion, the analysis of the microstructural characteristics using an optical microscope and SEM have proven to be useful as a categorizing reference factor in a provenance study on Goryeo celadons.

Data Provenance in Photogrammetry Through Documentation Protocols

NASA Astrophysics Data System (ADS)

Carboni, N.; Bruseker, G.; Guillem, A.; Bellido Castañeda, D.; Coughenour, C.; Domajnko, M.; de Kramer, M.; Ramos Calles, M. M.; Stathopoulou, E. K.; Suma, R.

2016-06-01

Documenting the relevant aspects in digitisation processes such as photogrammetry in order to provide a robust provenance for their products continues to present a challenge. The creation of a product that can be re-used scientifically requires a framework for consistent, standardised documentation of the entire digitisation pipeline. This article provides an analysis of the problems inherent to such goals and presents a series of protocols to document the various steps of a photogrammetric workflow. We propose this pipeline, with descriptors to track all phases of digital product creation in order to assure data provenance and enable the validation of the operations from an analytic and production perspective. The approach aims to support adopters of the workflow to define procedures with a long term perspective. The conceptual schema we present is founded on an analysis of information and actor exchanges in the digitisation process. The metadata were defined through the synthesis of previous proposals in this area and were tested on a case study. We performed the digitisation of a set of cultural heritage artefacts from an Iron Age burial in Ilmendorf, Germany. The objects were captured and processed using different techniques, including a comparison of different imaging tools and algorithms. This augmented the complexity of the process allowing us to test the flexibility of the schema for documenting complex scenarios. Although we have only presented a photogrammetry digitisation scenario, we claim that our schema is easily applicable to a multitude of 3D documentation processes.

Can Inferred Provenance and Its Visualisation Be Used to Detect Erroneous Annotation? A Case Study Using UniProtKB

PubMed Central

Bell, Michael J.; Collison, Matthew; Lord, Phillip

2013-01-01

A constant influx of new data poses a challenge in keeping the annotation in biological databases current. Most biological databases contain significant quantities of textual annotation, which often contains the richest source of knowledge. Many databases reuse existing knowledge; during the curation process annotations are often propagated between entries. However, this is often not made explicit. Therefore, it can be hard, potentially impossible, for a reader to identify where an annotation originated from. Within this work we attempt to identify annotation provenance and track its subsequent propagation. Specifically, we exploit annotation reuse within the UniProt Knowledgebase (UniProtKB), at the level of individual sentences. We describe a visualisation approach for the provenance and propagation of sentences in UniProtKB which enables a large-scale statistical analysis. Initially levels of sentence reuse within UniProtKB were analysed, showing that reuse is heavily prevalent, which enables the tracking of provenance and propagation. By analysing sentences throughout UniProtKB, a number of interesting propagation patterns were identified, covering over sentences. Over sentences remain in the database after they have been removed from the entries where they originally occurred. Analysing a subset of these sentences suggest that approximately are erroneous, whilst appear to be inconsistent. These results suggest that being able to visualise sentence propagation and provenance can aid in the determination of the accuracy and quality of textual annotation. Source code and supplementary data are available from the authors website at http://homepages.cs.ncl.ac.uk/m.j.bell1/sentence_analysis/. PMID:24143170

Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park.

PubMed

Brumm, Phillip J; Land, Miriam L; Mead, David A

2015-01-01

Geobacillus thermoglucosidasius C56-YS93 was one of several thermophilic organisms isolated from Obsidian Hot Spring, Yellowstone National Park, Montana, USA under permit from the National Park Service. Comparison of 16 S rRNA sequences confirmed the classification of the strain as a G. thermoglucosidasius species. The genome was sequenced, assembled, and annotated by the DOE Joint Genome Institute and deposited at the NCBI in December 2011 (CP002835). The genome of G. thermoglucosidasius C56-YS93 consists of one circular chromosome of 3,893,306 bp and two circular plasmids of 80,849 and 19,638 bp and an average G + C content of 43.93 %. G. thermoglucosidasius C56-YS93 possesses a xylan degradation cluster not found in the other G. thermoglucosidasius sequenced strains. This cluster appears to be related to the xylan degradation cluster found in G. stearothermophilus. G. thermoglucosidasius C56-YS93 possesses two plasmids not found in the other two strains. One plasmid contains a novel gene cluster coding for proteins involved in proline degradation and metabolism, the other contains a collection of mostly hypothetical proteins.

Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park

DOE PAGES

Brumm, Phillip J.; Land, Miriam L.; Mead, David A.

2015-10-05

Geobacillus thermoglucosidasius C56-YS93 was one of several thermophilic organisms isolated from Obsidian Hot Spring, Yellowstone National Park, Montana, USA under permit from the National Park Service. Comparison of 16 S rRNA sequences confirmed the classification of the strain as a G. thermoglucosidasius species. We sequenced the genome, assembled, and annotated by the DOE Joint Genome Institute and deposited at the NCBI in December 2011 (CP002835). Moreover, the genome of G. thermoglucosidasius C56-YS93 consists of one circular chromosome of 3,893,306 bp and two circular plasmids of 80,849 and 19,638 bp and an average G + C content of 43.93 %. G.more » thermoglucosidasius C56-YS93 possesses a xylan degradation cluster not found in the other G. thermoglucosidasius sequenced strains. Furthermore this cluster appears to be related to the xylan degradation cluster found in G. stearothermophilus. G. thermoglucosidasius C56-YS93 possesses two plasmids not found in the other two strains. One plasmid contains a novel gene cluster coding for proteins involved in proline degradation and metabolism, the other contains a collection of mostly hypothetical proteins.« less

Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brumm, Phillip J.; Land, Miriam L.; Mead, David A.

Geobacillus thermoglucosidasius C56-YS93 was one of several thermophilic organisms isolated from Obsidian Hot Spring, Yellowstone National Park, Montana, USA under permit from the National Park Service. Comparison of 16 S rRNA sequences confirmed the classification of the strain as a G. thermoglucosidasius species. We sequenced the genome, assembled, and annotated by the DOE Joint Genome Institute and deposited at the NCBI in December 2011 (CP002835). Moreover, the genome of G. thermoglucosidasius C56-YS93 consists of one circular chromosome of 3,893,306 bp and two circular plasmids of 80,849 and 19,638 bp and an average G + C content of 43.93 %. G.more » thermoglucosidasius C56-YS93 possesses a xylan degradation cluster not found in the other G. thermoglucosidasius sequenced strains. Furthermore this cluster appears to be related to the xylan degradation cluster found in G. stearothermophilus. G. thermoglucosidasius C56-YS93 possesses two plasmids not found in the other two strains. One plasmid contains a novel gene cluster coding for proteins involved in proline degradation and metabolism, the other contains a collection of mostly hypothetical proteins.« less

Survival and height growth of northern white-cedar from 18 provenances

Treesearch

Richard M. Jeffers

1976-01-01

Northern white-cedar from 18 provenances was evaluated for total height in the nursery and for survival and total height in two field plantings in northern Wisconsin and in western Upper Michigan. There were significant differences among provenances in survival at one location and in height at both field locations 5 years after planting; there were no differences among...

Modeling the Provenance of Crater Ejecta

NASA Astrophysics Data System (ADS)

Huang, Ya-Huei; Minton, David A.

2014-11-01

The cratering history of the Moon provides a way to study the violent early history of our early solar system. Nevertheless, we are still limited in our ability to interpret the lunar cratering history because the complex process of generation and subsequent transportation and destruction of impact melt products is relatively poorly understood. Here we describe a preliminary model for the transport of datable impact melt products by craters over Gy timescales on the lunar surface. We use a numerical model based on the Maxwell Z-model to model the exhumation and transport of ejecta material from within the excavation flow of a transient crater. We describe our algorithm for rapidly estimating the provenance of ejecta material for use in a Monte Carlo cratering code capable of simulating lunar cratering over Gy timescales.

QEMSCAN+LA-ICP-MS: a 'big data' generator for sedimentary provenance analysis

NASA Astrophysics Data System (ADS)

Vermeesch, Pieter; Rittner, Martin; Garzanti, Eduardo

2017-04-01

Sedimentary provenance may be traced by 'fingerprinting' sediments with chemical, mineralogical or isotopic means. Normally, each of these provenance proxies is characterised on a separate aliquot of the same sample. For example, the chemical composition of the bulk sample may be analysed by X-ray fluorescence (XRF) on one aliquot, framework petrography on another, heavy mineral analysis on a density separate of a third split, and zircon U-Pb dating on a further density separate of the heavy mineral fraction. The labour intensity of this procedure holds back the widespread application of multi-method provenance studies. We here present a new method to solve this problem and avoid mineral separation by coupling a QEMSCAN electron microscope to an LA-ICP-MS instrument and thereby generate all four aforementioned provenance datasets as part of the same workflow. Given a polished hand specimen, a petrographic thin section, or a grain mount, the QEMSCAN+LA-ICP-MS method produces chemical and mineralogical maps from which the X-Y coordinates of the datable mineral are extracted. These coordinates are subsequently passed on to the laser ablation system for isotopic and, hence, geochronological analysis. In the process of finding all the zircons in a sediment grain mount, the QEMSCAN yields the compositional and mineralogical compositions as byproducts. We have applied the new QEMSCAN+LA-ICP-MS instrument suite to over 100 samples from three large sediment routing systems: (1) the Tigris-Euphrates river catchments and Rub' Al Khali desert in Arabia; (2) the Nile catchment in northeast Africa and (3) desert and beach sands between the Orange and Congo rivers in southwest Africa. These studies reveal (1) that Rub' Al Khali sand is predominantly derived from the Arabian Shield and not from Mesopotamia; (2) that the Blue Nile is the principal source of Nile sand; and (3) that Orange River sand is carried northward by longshore drift nearly 1,800km from South Africa to southern

The Unknown Oldowan: ~1.7-Million-Year-Old Standardized Obsidian Small Tools from Garba IV, Melka Kunture, Ethiopia

PubMed Central

2015-01-01

The Oldowan Industrial Complex has long been thought to have been static, with limited internal variability, embracing techno-complexes essentially focused on small-to-medium flake production. The flakes were rarely modified by retouch to produce small tools, which do not show any standardized pattern. Usually, the manufacture of small standardized tools has been interpreted as a more complex behavior emerging with the Acheulean technology. Here we report on the ~1.7 Ma Oldowan assemblages from Garba IVE-F at Melka Kunture in the Ethiopian highland. This industry is structured by technical criteria shared by the other East African Oldowan assemblages. However, there is also evidence of a specific technical process never recorded before, i.e. the systematic production of standardized small pointed tools strictly linked to the obsidian exploitation. Standardization and raw material selection in the manufacture of small tools disappear at Melka Kunture during the Lower Pleistocene Acheulean. This proves that 1) the emergence of a certain degree of standardization in tool-kits does not reflect in itself a major step in cultural evolution; and that 2) the Oldowan knappers, when driven by functional needs and supported by a highly suitable raw material, were occasionally able to develop specific technical solutions. The small tool production at ~1.7 Ma, at a time when the Acheulean was already emerging elsewhere in East Africa, adds to the growing amount of evidence of Oldowan techno-economic variability and flexibility, further challenging the view that early stone knapping was static over hundreds of thousands of years. PMID:26690569

Evaluation of new geological reference materials for uranium-series measurements: Chinese Geological Standard Glasses (CGSG) and macusanite obsidian.

PubMed

Denton, J S; Murrell, M T; Goldstein, S J; Nunn, A J; Amato, R S; Hinrichs, K A

2013-10-15

Recent advances in high-resolution, rapid, in situ microanalytical techniques present numerous opportunities for the analytical community, provided accurately characterized reference materials are available. Here, we present multicollector thermal ionization mass spectrometry (MC-TIMS) and multicollector inductively coupled plasma mass spectrometry (MC-ICP-MS) uranium and thorium concentration and isotopic data obtained by isotope dilution for a suite of newly available Chinese Geological Standard Glasses (CGSG) designed for microanalysis. These glasses exhibit a range of compositions including basalt, syenite, andesite, and a soil. Uranium concentrations for these glasses range from ∼2 to 14 μg g(-1), Th/U weight ratios range from ∼4 to 6, (234)U/(238)U activity ratios range from 0.93 to 1.02, and (230)Th/(238)U activity ratios range from 0.98 to 1.12. Uranium and thorium concentration and isotopic data are also presented for a rhyolitic obsidian from Macusani, SE Peru (macusanite). This glass can also be used as a rhyolitic reference material, has a very low Th/U weight ratio (around 0.077), and is approximately in (238)U-(234)U-(230)Th secular equilibrium. The U-Th concentration data agree with but are significantly more precise than those previously measured. U-Th concentration and isotopic data agree within estimated errors for the two measurement techniques, providing validation of the two methods. The large (238)U-(234)U-(230)Th disequilibria for some of the glasses, along with the wide range in their chemical compositions and Th/U ratios should provide useful reference points for the U-series analytical community.

The Unknown Oldowan: ~1.7-Million-Year-Old Standardized Obsidian Small Tools from Garba IV, Melka Kunture, Ethiopia.

PubMed

Gallotti, Rosalia; Mussi, Margherita

2015-01-01

The Oldowan Industrial Complex has long been thought to have been static, with limited internal variability, embracing techno-complexes essentially focused on small-to-medium flake production. The flakes were rarely modified by retouch to produce small tools, which do not show any standardized pattern. Usually, the manufacture of small standardized tools has been interpreted as a more complex behavior emerging with the Acheulean technology. Here we report on the ~1.7 Ma Oldowan assemblages from Garba IVE-F at Melka Kunture in the Ethiopian highland. This industry is structured by technical criteria shared by the other East African Oldowan assemblages. However, there is also evidence of a specific technical process never recorded before, i.e. the systematic production of standardized small pointed tools strictly linked to the obsidian exploitation. Standardization and raw material selection in the manufacture of small tools disappear at Melka Kunture during the Lower Pleistocene Acheulean. This proves that 1) the emergence of a certain degree of standardization in tool-kits does not reflect in itself a major step in cultural evolution; and that 2) the Oldowan knappers, when driven by functional needs and supported by a highly suitable raw material, were occasionally able to develop specific technical solutions. The small tool production at ~1.7 Ma, at a time when the Acheulean was already emerging elsewhere in East Africa, adds to the growing amount of evidence of Oldowan techno-economic variability and flexibility, further challenging the view that early stone knapping was static over hundreds of thousands of years.

Persistent identifiers for web service requests relying on a provenance ontology design pattern

NASA Astrophysics Data System (ADS)

Car, Nicholas; Wang, Jingbo; Wyborn, Lesley; Si, Wei

2016-04-01

Delivering provenance information for datasets produced from static inputs is relatively straightforward: we represent the processing actions and data flow using provenance ontologies and link to stored copies of the inputs stored in repositories. If appropriate detail is given, the provenance information can then describe what actions have occurred (transparency) and enable reproducibility. When web service-generated data is used by a process to create a dataset instead of a static inputs, we need to use sophisticated provenance representations of the web service request as we can no longer just link to data stored in a repository. A graph-based provenance representation, such as the W3C's PROV standard, can be used to model the web service request as a single conceptual dataset and also as a small workflow with a number of components within the same provenance report. This dual representation does more than just allow simplified or detailed views of a dataset's production to be used where appropriate. It also allow persistent identifiers to be assigned to instances of a web service requests, thus enabling one form of dynamic data citation, and for those identifiers to resolve to whatever level of detail implementers think appropriate in order for that web service request to be reproduced. In this presentation we detail our reasoning in representing web service requests as small workflows. In outline, this stems from the idea that web service requests are perdurant things and in order to most easily persist knowledge of them for provenance, we should represent them as a nexus of relationships between endurant things, such as datasets and knowledge of particular system types, as these endurant things are far easier to persist. We also describe the ontology design pattern that we use to represent workflows in general and how we apply it to different types of web service requests. We give examples of specific web service requests instances that were made by systems

A case study on the application of isotope ratio mass spectrometry (IRMS) in determining the provenance of a rock used in an alleged nickel switching incident.

PubMed

Roelofse, F; Horstmann, U E

2008-01-15

The application of isotope ratio mass spectrometry (IRMS) in forensic science to establish the provenance of a range of questioned substances including soils, drugs, explosives, currency, ivory and rhino horn has been widely documented. The present study wishes to highlight the applicability of IRMS and specifically stable carbon IRMS in determining the provenance of a carbonate rock that was switched for nickel metal exported from South Africa to Israel. The technique employed effectively argued against a South African origin for the rock whilst simultaneously supporting an Israeli origin, enabling investigators to focus their attention accordingly. The study represents the first documented instance known to the authors where IRMS has been employed in the forensic geo-location of a rock.

[Genetic variation of geographical provenance of Pinus massoniana--review and analysis].

PubMed

Li, D; Peng, S

2000-04-01

Pinus massoniana is a significant tree species constituting the subtropical forests in China. Based on morphological, physio-ecological, chromosome, and molecular levels, the genetic variation of geographical provenance of P. massoniana and its distribution were reviewed, and the methodologies on genetic diversity and the genetic variation patterns of geographical provenance of P. massoniana were synthetically analyzed. The Key problems on molecular ecology of P. massoniana were discussed.

Community Education Proven Practices II: Networking Strategies.

ERIC Educational Resources Information Center

Arkansas State Dept. of Education, Little Rock.

Designed to be used by those who wish to initiate or further develop community education programs at the state and local levels, this publication is one of a series of "Proven Practices" developed by federally-funded state and local community education projects. The booklet describes the administrative design and the process used to…

Change in Sediment Provenance Near the Current Estuary of Yellow River Since the Holocene Transgression

NASA Astrophysics Data System (ADS)

Song, Sheng; Feng, Xiuli; Li, Guogang; Liu, Xiao; Xiao, Xiao; Feng, Li

2018-06-01

Sedimentary sequence and sediment provenance are important factors when it comes to the studies on marine sedimentation. This paper studies grain size distribution, lithological characteristics, major and rare earth elemental compositions, micropaleontological features and 14C ages in order to examine sedimentary sequence and sediment provenance of the core BH6 drilled at the mouth of the Yellow River in Bohai Sea. According to the grain size and the micropaleontological compositions, 4 sedimentary units have been identified. Unit 1 (0-8.08 mbsf) is of the delta sedimentary facies, Unit 2 (8.08-12.08 mbsf) is of the neritic shelf facies, Unit 3 (12.08-23.85 mbsf) is of near-estuary beach-tidal facies, and Unit 4 (23.85 mbsf-) is of the continental lake facies. The deposits from Unit 1 to Unit 3 have been found to be marine strata formed after the Holocene transgression at about 10 ka BP, while Unit 4 is continental lacustrine deposit formed before 10 ka BP. The provenances of core BH6 sediments show properties of the continental crust and vary in different sedimentary periods. For Unit 4 sediments, the source regions are dispersed while the main provenance is not clear, although the parent rock characteristics of a few samples are similar to the Luanhe River sediments. For Unit 3, sediments at 21.1-23.85 mbsf have been mainly transported from the Liaohe River, while sediments above 21.1 mbsf are mainly from the Yellow River and partially from the Liaohe River. For Unit 2, the sediments have been mainly transported from the Yellow River, with a small amount from other rivers. For Unit 1, the provenance is mainly the Yellow River catchment. These results help in better understanding the evolution of the Yellow River Delta.

Performance of Australian provenances of Eucalyptus grandis and Eucalyptus saligna in Hawaii

Treesearch

Roger G. Skolmen

1986-01-01

Australian provenances of Eucalyptus grandis and E. saligna were compared at four locations on the island of Hawaii to seek seed sources better than those in current use which were introduced earlier from unrecorded locations in Australia. A broad range of latitude and elevation was represented among the provenances. At all four...

An Ontology-Enabled Natural Language Processing Pipeline for Provenance Metadata Extraction from Biomedical Text (Short Paper).

PubMed

Valdez, Joshua; Rueschman, Michael; Kim, Matthew; Redline, Susan; Sahoo, Satya S

2016-10-01

Extraction of structured information from biomedical literature is a complex and challenging problem due to the complexity of biomedical domain and lack of appropriate natural language processing (NLP) techniques. High quality domain ontologies model both data and metadata information at a fine level of granularity, which can be effectively used to accurately extract structured information from biomedical text. Extraction of provenance metadata, which describes the history or source of information, from published articles is an important task to support scientific reproducibility. Reproducibility of results reported by previous research studies is a foundational component of scientific advancement. This is highlighted by the recent initiative by the US National Institutes of Health called "Principles of Rigor and Reproducibility". In this paper, we describe an effective approach to extract provenance metadata from published biomedical research literature using an ontology-enabled NLP platform as part of the Provenance for Clinical and Healthcare Research (ProvCaRe). The ProvCaRe-NLP tool extends the clinical Text Analysis and Knowledge Extraction System (cTAKES) platform using both provenance and biomedical domain ontologies. We demonstrate the effectiveness of ProvCaRe-NLP tool using a corpus of 20 peer-reviewed publications. The results of our evaluation demonstrate that the ProvCaRe-NLP tool has significantly higher recall in extracting provenance metadata as compared to existing NLP pipelines such as MetaMap.

Capturing and Understanding Experiment Provenance using NiNaC

NASA Astrophysics Data System (ADS)

Rosati, C.

2017-12-01

A problem the model development team faces at the GFDL is determining climate model experiment provenance. Each experiment is configured with at least one configuration file which may reference other files. The experiment then passes through three phases before completion. Configuration files or other input files may be modified between phases. Finding the modifications later is tedious due to the expanse of the experiment input and duplication across phases. Determining provenance may be impossible if any file has been changed or deleted. To reduce these efforts and address these problems, we propose a new toolset, NiNaC, for archiving experiment provenance from the beginning of the experiment to the end and every phase in-between. Each of the three phases, check-out, build, and run, of the experiment depends on the previous phase. We use a graph to model the phase dependencies. Let each phase be represented by a node. Let each edge correspond to a dependency between phases where the node incident with the tail depends on the node incident with the head. It follows that the dependency graph is a tree. We reduce the problem to finding the lowest common ancestor and diffing the successor nodes. All files related to input for a phase are assigned a checksum. A new file is created to aggregate the checksums. Then each phase is assigned a checksum of aforementioned file as an identifier. Any change to part of a phase configuration will create unique checksums in all subsequent phases. Finding differences between experiments with this toolset is as simple as diffing two files containing checksums found by traversing the tree. One new benefit is that this toolset now allows differences in source code to be found after experiments are run, which was previously impossible for executables that cannot be linked to a known version controlled source code. Knowing that these changes exist allows us to give priority to help desk tickets concerning unmodified supported experiment

Preparing All Teachers to Use Proven, Effective Instructional Methods across the Curriculum.

ERIC Educational Resources Information Center

Southern Regional Education Board (SREB), 2012

2012-01-01

Research has shown that certain ways of teaching can make a difference in whether students learn standards-based content. Many strategies have proven to be effective in teaching literacy, mathematics, science and social studies. These strategies have facilitated blending academic and career/technical subjects to make learning more meaningful for…

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dolan, Sean Gregory; Shackley, M. Steven

A piece of mahogany obsidian came to the attention of the senior author during an excavation project near the town of Mata Ortiz, Chihuahua, Mexico in 2015. Because mahogany obsidian in northwestern Mexico is particularly rare, the question was raised, what obsidian source did this sample derive? Here, using energy-dispersive X-ray fluorescence (EDXRF) spectrometry, we demonstrate it comes from the Agua Fria obsidian source in northeastern Sonora, Mexico. Unfortunately, we do not know where this sample was collected from. We discuss these results and the significance of this find in this paper, but more investigation is certainly warranted.

Archaeological Sites Inventory of the Training Area 10 and 12 Portions of the Pinon Canyon Maneuver Site, Las Animas County, Colorado. Volume 2

DTIC Science & Technology

2004-01-01

the Hartville Uplift source) and obsidian. The source location for this obsidian is the Jemez Mountains of New Mexico (Cerro del Medio dome, Appendix...Mountain (Polvadera Peak, Obsidian Ridge, and Cerro del Medio sources in New Mexico ), Malad (Idaho) and Yellowstone (Wyoming) obsidian, Plate...5LA8308, 61 14 160 8 39 157 48 nm nm nm nm nm Cerro del Medio . FS # 15 ±7 ±4 ±5 ±3 ±4 ±4 ±3 New Mexico 5LA8309, 73 21 151 8 41 150 49 nm nm nm nm nm Cerro

Triangulating the provenance of African elephants using mitochondrial DNA

PubMed Central

Ishida, Yasuko; Georgiadis, Nicholas J; Hondo, Tomoko; Roca, Alfred L

2013-01-01

African elephant mitochondrial (mt) DNA follows a distinctive evolutionary trajectory. As females do not migrate between elephant herds, mtDNA exhibits low geographic dispersal. We therefore examined the effectiveness of mtDNA for assigning the provenance of African elephants (or their ivory). For 653 savanna and forest elephants from 22 localities in 13 countries, 4258 bp of mtDNA was sequenced. We detected eight mtDNA subclades, of which seven had regionally restricted distributions. Among 108 unique haplotypes identified, 72% were found at only one locality and 84% were country specific, while 44% of individuals carried a haplotype detected only at their sampling locality. We combined 316 bp of our control region sequences with those generated by previous trans-national surveys of African elephants. Among 101 unique control region haplotypes detected in African elephants across 81 locations in 22 countries, 62% were present in only a single country. Applying our mtDNA results to a previous microsatellite-based assignment study would improve estimates of the provenance of elephants in 115 of 122 mis-assigned cases. Nuclear partitioning followed species boundaries and not mtDNA subclade boundaries. For taxa such as elephants in which nuclear and mtDNA markers differ in phylogeography, combining the two markers can triangulate the origins of confiscated wildlife products. PMID:23798975

Provenance of sandstones in the Golconda terrane, north central Nevada

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jones, E.A.

1991-02-01

The upper Paleozoic Golconda terrane of north-central Nevada is a composite of several structurally bounded subterranes made of clastic, volcanic, and carbonate rocks. The clastic rocks provide important clues for the interpretation of the provenance and paleogeographic settings of the different lithologic assemblages found in these subterranes. Two petrographically distinct sandstones are identified in the Golconda terrane in the Osgood Mountains and the Hot springs Range of north-central Nevada. The sandstone of the Mississippian Farrel Canyon Formation, part of the Dry Hills subterrane, is characterized by quartzose and sedimentary and lithic-rich clasts with a small feldspar component. in contrast, themore » sandstone of the Permian Poverty Peak (II) subterrane is a silty quartzarenite with no lithic component, and a very limited feldspar component. The sandstone of the Farrel Canyon Formation is similar to nonvolcanic sandstones reported from elsewhere in the Golconda terrane. Modal data reflect a provenance of a recycled orogen and permit the interpretation that it could have been derived from the antler orogen as has been proposed for other sandstones of the golconda terrane. The sandstone of the Poverty Peak (II) subterrane is more mature than any of the other sandstones in either the Golconda terrane, the Antler overlap sequence, or the Antler foreland basin sequence. Modal data put the Poverty Peak (II) sandstone in the continental block provenance category. The distinct extrabasinal provenances represented in these different sandstones support the idea that the Golconda basin was made up of complex paleogeographic settings, which included multiple sources of extrabasinal sediment.« less

Rare earth elements in weathering profiles and sediments of Minnesota: Implications for provenance studies

USGS Publications Warehouse

Morey, G.B.; Setterholm, D.R.

1997-01-01

The relative abundance of rare earth elements in sediments has been suggested as a tool for determining their source rocks. This correlation requires that weathering, erosion, and sedimentation do not alter the REE abundances, or do so in a predictable manner. We find that the rare earth elements are mobilized and fractionated by weathering, and that sediments derived from the weathered materials can display modifications of the original pattern of rare earth elements of some due to grain-size sorting of the weathered material. However, the REE distribution pattern of the provenance terrane can be recognized in the sediments.

Response of different white fir geographic provenances to Trichosporium symbioticum inoculation in California

Treesearch

William J. Otrosina; Stanley J. Zarnoch

2012-01-01

We inoculated the fir engraver (Scolytus ventralis LeConte) associated fungus Trichosporium symbioticum Wright onto 56 white fir (Abies concolor (Gordon & Glend.) Lindl. ex Hildebr.) trees planted in a common garden study near Camino, California, that represented five geographic provenances of this species....

Proven Alternatives for Aboveground Treatment of Arsenic in Groundwater

EPA Pesticide Factsheets

This issue paper, developed for EPA's Engineering Forum, identifies and summarizes experiences with proven aboveground treatment alternatives for arsenic in groundwater, and provides information on their relative effectiveness and cost.

Height and diameter variation in twelve white ash provenance/progeny tests in eastern United States

Treesearch

G. Rink; F.H. Kung

1991-01-01

Results from 12- and 13-year old rangewide provenance/progeny tests of white ash (Fraxinus americana L.) planted at 12 locations throughout the eastern United States are reported. Although heritability of white ash tree height and dbh is high at both the provenance and family levels, the trend in variance components is for increasing provenance and...

Provenance and progeny variation in pitch pine from the Atlantic Coastal Plain

Treesearch

John E. Kuser; F. Thomas Ledig

1987-01-01

A test of open-pollinated pitch pine families from 17 different locations on the Atlantic Coastal Plain was evaluated at 12 years of age. Genetic variation for growth was almost totally on the provenance level and was detectable among families within provenances in only a few cases. Mean volume decreased with latitude and also with distance of the seed origin from the...

Can cathodoluminescence of feldspar be used as provenance indicator?

NASA Astrophysics Data System (ADS)

Scholonek, Christiane; Augustsson, Carita

2016-05-01

We have studied feldspar from crystalline rocks for its textural and spectral cathodoluminescence (CL) characteristics with the aim to reveal their provenance potential. We analyzed ca. 60 rock samples of plutonic, volcanic, metamorphic, and pegmatitic origin from different continents and of 16 Ma to 2 Ga age for their feldspar CL textures and ca. 1200 feldspar crystals from these rocks for their CL color spectra. Among the analyzed rocks, igneous feldspar is most commonly zoned, whereby oscillatory zoning can be confirmed to be typical for volcanic plagioclase. The volcanic plagioclase also less commonly contains twin lamellae that are visible in CL light than crystals from other rock types. Alkali feldspar, particularly from igneous and pegmatitic rocks, was noted to be most affected by alteration features, visible as dark spots, lines and irregular areas. The size of all textural features of up to ca. 150 μm, in combination with possible alteration in both the source area and the sedimentary system, makes the CL textures of feldspar possible to use for qualitative provenance research only. We observed alkali feldspar mostly to luminesce in a bluish color and sometimes in red, and plagioclase in green to yellow. The corresponding CL spectra are dominated by three apparent intensity peaks at 440-520 nm (mainly blue), 540-620 nm (mainly green) and 680-740 nm (red to infrared). A dominance of the peak in the green wavelength interval over the blue one for plagioclase makes CL particularly useful for the differentiation of plagioclase from alkali feldspar. An apparent peak position in red to infrared at < 710 nm for plagioclase mainly is present in mafic rocks. Present-day coastal sand from Peru containing feldspar with the red to infrared peak position mainly exceeding 725 nm for northern Peruvian sand and a larger variety for sand from southern Peru illustrates a discriminative effect of different source areas. We conclude that the provenance application

Synchronisms between bud and cambium phenology in black spruce: early-flushing provenances exhibit early xylem formation.

PubMed

Perrin, Magali; Rossi, Sergio; Isabel, Nathalie

2017-05-01

Bud and cambial phenology represent the adaptation of species to the local environment that allows the growing season to be maximized while minimizing the risk of frost for the developing tissues. The temporal relationship between the apical and radial meristems can help in the understanding of tree growth as a whole process. The aim of this study was to compare cambial phenology in black spruce (Picea mariana (Mill.) B.S.P.) provenances classified as early and late bud flushing. The different phases of cambial phenology were assessed on wood microcores sampled weekly from April to October in 2014 and 2015 from 61 trees growing in a provenance trial in Quebec, Canada. Trees showing an early bud flush also exhibited early reactivation of xylem differentiation, although an average difference of 12 days for buds corresponded to small although significant differences of 4 days for xylem. Provenances with early bud flush had an early bud set and completed xylem formation earlier than late bud flush provenances. No significant difference in the period of xylem formation and total growth was observed between the flushing classes. Our results demonstrate that the ecotype differentiation of black spruce provenances represented by the phenological adaptation of buds to the local climate corresponds to specific growth dynamics of the xylem. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Scab susceptibility of a provenance collection of pecan

USDA-ARS?s Scientific Manuscript database

Scab (caused by Fusicladium effusum) is the most economically destructive disease of pecan in the Southeast US. Epidemics are favored by rainfall and high humidity. A provenance collection of ~950 pecan trees from 19 locations representing the native range of the species is located in Byron, Georgia...

EFFECTS OF COLD STRATIFICATION AND GA3 ON GERMINATION OF ARBUTUS UNEDO SEEDS OF THREE PROVENANCES.

PubMed

Pipinis, Elias; Stampoulidis, Athanasios; Milios, Elias; Kitikidou, Kyriaki; Radoglou, Kalliopi

2017-01-01

Arbutus unedo is a valuable Mediterranean shrub as an ornamental plant as well as fruit tree. Fresh fruits of A. unedo are a good source of antioxidants, of vitamins C, E and carotenoids and also are characterized by the high content of mineral elements. The effects of gibberellic acid (GA 3 ) and cold stratification (CS) on seed germination performance were investigated in A. unedo seeds collected from three provenances in the Northern part of Greece. Seeds of each provenance were soaked in solutions of GA 3 (500, 1000 or 2000 ppm) for 24 h and subsequently were subjected to CS at 3 - 5°C for 0, 1, 2, and 3 months. Non-stratified seeds of the three A. unedo provenances which were not treated with GA 3 solutions exhibited very low germination. However, seed germination was significantly improved after a one-month period of CS. Similarly, the non-stratified seeds of all three provenances became non-dormant after the treatment with 2000 ppm GA 3 and they germinated at high percentages. However, in untreated seeds with GA3, after a one-month CS period the seeds of the Pieria provenance exhibited higher germination percentage than that of Rodopi provenance seeds. Furthermore, in non-stratified seeds, the Pieria provenance seeds treated with GA3 germinated at higher percentages and more rapidly than those of the other two provenances. The results indicated that untreated seeds exhibited very low germination at 20/25°C. However, in all three provenances seed germinability was significantly improved by a one-month period of CS or treatment of seeds with 2000 ppm GA3. Furthermore, there was a considerable variability among seed provenances in response to the treatments which were applied.

Spatial and Temporal Patterns of IRD Provenance in Glacial North Atlantic Sediments

NASA Astrophysics Data System (ADS)

Hemming, S. R.; Grousset, F. E.; Roy, M.; Julien, E.

2004-05-01

A full picture of ocean-atmosphere-ice sheet interactions awaits a thorough assessment of the array of different types of IRD layers with observations as well as models. Factors that must be considered in the observational studies are provenance (including geographic region of origin and whether icebergs or sea ice was the transporting agent), flux, relationship to sedimentological patterns such as grain size variations, and lateral sediment redistribution on the seafloor. We focus here on the provenance observations and their implications during the intervals of Heinrich layers H3 through H2, approximately 31 to 20 kyr. During the last glacial interval and prior to H3 (ca. 60-31 kyr), ice sheets had not achieved their maximum positions, and the abundance of IRD in marine sediments was generally lower as evidenced by standard measures such as %IRD and number of lithic grains per gram. H3 appears to be related to a modest IRD flux and it has been inferred to be a low foraminifera zone more than and IRD event. The map pattern of provenance variation within the H3 interval appears to be clearly relatable to surface current patterns and a significant portion of the continental derived detritus in eastern North Atlantic cores must have a European and/or Iceland+Greenland origin. In eastern Atlantic core VM28-82, the provenance varies abruptly across the low foraminifera interval of H3. In the Labrador Sea H3 has a composition like those of H1, H2, H4 and H5, suggesting a Hudson Strait source. Accordingly, the evidence appears to favor multiple sources of detritus (none of which overwhelmed the sediment load in the IRD belt) with a depositional pattern that is consistent with known surface currents. H1, H2, H4 and H5 can be traced far across the Atlantic to near Britain and Iberia based on the overwhelming Hudson Strait provenance. A difficulty in assessing geographical variations in the precursory intervals of Heinrich events is the rapid temporal variation in

Survival and growth patterns of white spruce (Picea glauca [Moench] Voss) rangewide provenances and their implications for climate change adaptation

PubMed Central

Lu, Pengxin; Parker, William H; Cherry, Marilyn; Colombo, Steve; Parker, William C; Man, Rongzhou; Roubal, Ngaire

2014-01-01

Intraspecific assisted migration (ISAM) through seed transfer during artificial forest regeneration has been suggested as an adaptation strategy to enhance forest resilience and productivity under future climate. In this study, we assessed the risks and benefits of ISAM in white spruce based on long-term and multilocation, rangewide provenance test data. Our results indicate that the adaptive capacity and growth potential of white spruce varied considerably among 245 range-wide provenances sampled across North America; however, the results revealed that local populations could be outperformed by nonlocal ones. Provenances originating from south-central Ontario and southwestern Québec, Canada, close to the southern edge of the species' natural distribution, demonstrated superior growth in more northerly environments compared with local populations and performed much better than populations from western Canada and Alaska, United States. During the 19–28 years between planting and measurement, the southern provenances have not been more susceptible to freezing damage compared with local populations, indicating they have the potential to be used now for the reforestation of more northerly planting sites; based on changing temperature, these seed sources potentially could maintain or increase white spruce productivity at or above historical levels at northern sites. A universal response function (URF), which uses climatic variables to predict provenance performance across field trials, indicated a relatively weak relationship between provenance performance and the climate at provenance origin. Consequently, the URF from this study did not provide information useful to ISAM. The ecological and economic importance of conserving white spruce genetic resources in south-central Ontario and southwestern Québec for use in ISAM is discussed. PMID:25360273

Survival and growth patterns of white spruce (Picea glauca [Moench] Voss) rangewide provenances and their implications for climate change adaptation.

PubMed

Lu, Pengxin; Parker, William H; Cherry, Marilyn; Colombo, Steve; Parker, William C; Man, Rongzhou; Roubal, Ngaire

2014-06-01

Intraspecific assisted migration (ISAM) through seed transfer during artificial forest regeneration has been suggested as an adaptation strategy to enhance forest resilience and productivity under future climate. In this study, we assessed the risks and benefits of ISAM in white spruce based on long-term and multilocation, rangewide provenance test data. Our results indicate that the adaptive capacity and growth potential of white spruce varied considerably among 245 range-wide provenances sampled across North America; however, the results revealed that local populations could be outperformed by nonlocal ones. Provenances originating from south-central Ontario and southwestern Québec, Canada, close to the southern edge of the species' natural distribution, demonstrated superior growth in more northerly environments compared with local populations and performed much better than populations from western Canada and Alaska, United States. During the 19-28 years between planting and measurement, the southern provenances have not been more susceptible to freezing damage compared with local populations, indicating they have the potential to be used now for the reforestation of more northerly planting sites; based on changing temperature, these seed sources potentially could maintain or increase white spruce productivity at or above historical levels at northern sites. A universal response function (URF), which uses climatic variables to predict provenance performance across field trials, indicated a relatively weak relationship between provenance performance and the climate at provenance origin. Consequently, the URF from this study did not provide information useful to ISAM. The ecological and economic importance of conserving white spruce genetic resources in south-central Ontario and southwestern Québec for use in ISAM is discussed.

Providing Global Change Information for Decision-Making: Capturing and Presenting Provenance

NASA Technical Reports Server (NTRS)

Ma, Xiaogang; Fox, Peter; Tilmes, Curt; Jacobs, Katherine; Waple, Anne

2014-01-01

Global change information demands access to data sources and well-documented provenance to provide evidence needed to build confidence in scientific conclusions and, in specific applications, to ensure the information's suitability for use in decision-making. A new generation of Web technology, the Semantic Web, provides tools for that purpose. The topic of global change covers changes in the global environment (including alterations in climate, land productivity, oceans or other water resources, atmospheric composition and or chemistry, and ecological systems) that may alter the capacity of the Earth to sustain life and support human systems. Data and findings associated with global change research are of great public, government, and academic concern and are used in policy and decision-making, which makes the provenance of global change information especially important. In addition, since different types of decisions benefit from different types of information, understanding how to capture and present the provenance of global change information is becoming more of an imperative in adaptive planning.

Visualisation methods for large provenance collections in data-intensive collaborative platforms

NASA Astrophysics Data System (ADS)

Spinuso, Alessandro; Fligueira, Rosa; Atkinson, Malcolm; Gemuend, Andre

2016-04-01

This work investigates improving the methods of visually representing provenance information in the context of modern data-driven scientific research. It explores scenarios where data-intensive workflows systems are serving communities of researchers within collaborative environments, supporting the sharing of data and methods, and offering a variety of computation facilities, including HPC, HTC and Cloud. It focuses on the exploration of big-data visualization techniques aiming at producing comprehensive and interactive views on top of large and heterogeneous provenance data. The same approach is applicable to control-flow and data-flow workflows or to combinations of the two. This flexibility is achieved using the W3C-PROV recommendation as a reference model, especially its workflow oriented profiles such as D-PROV (Messier et al. 2013). Our implementation is based on the provenance records produced by the dispel4py data-intensive processing library (Filgueira et al. 2015). dispel4py is an open-source Python framework for describing abstract stream-based workflows for distributed data-intensive applications, developed during the VERCE project. dispel4py enables scientists to develop their scientific methods and applications on their laptop and then run them at scale on a wide range of e-Infrastructures (Cloud, Cluster, etc.) without making changes. Users can therefore focus on designing their workflows at an abstract level, describing actions, input and output streams, and how they are connected. The dispel4py system then maps these descriptions to the enactment platforms, such as MPI, Storm, multiprocessing. It provides a mechanism which allows users to determine the provenance information to be collected and to analyze it at runtime. For this work we consider alternative visualisation methods for provenance data, from infinite lists and localised interactive graphs, to radial-views. The latter technique has been positively explored in many fields, from text

Standardization and program effect analysis (Study 2.4). Volume 2: Equipment commonality analysis. [cost savings of using flight-proven components in designing spacecraft

NASA Technical Reports Server (NTRS)

Shiokari, T.

1975-01-01

The feasibility and cost savings of using flight-proven components in designing spacecraft were investigated. The components analyzed were (1) large space telescope, (2) stratospheric aerosol and gas equipment, (3) mapping mission, (4) solar maximum mission, and (5) Tiros-N. It is concluded that flight-proven hardware can be used with not-too-extensive modification, and significant savings can be realized. The cost savings for each component are presented.

Missing Rings, Synchronous Growth, and Ecological Disturbance in a 36-Year Pitch Pine (Pinus rigida) Provenance Study.

PubMed

Leland, Caroline; Hom, John; Skowronski, Nicholas; Ledig, F Thomas; Krusic, Paul J; Cook, Edward R; Martin-Benito, Dario; Martin-Fernandez, Javier; Pederson, Neil

2016-01-01

Provenance studies are an increasingly important analog for understanding how trees adapted to particular climatic conditions might respond to climate change. Dendrochronological analysis can illuminate differences among trees from different seed sources in terms of absolute annual growth and sensitivity to external growth factors. We analyzed annual radial growth of 567 36-year-old pitch pine (Pinus rigida Mill.) trees from 27 seed sources to evaluate their performance in a New Jersey Pine Barrens provenance experiment. Unexpectedly, missing rings were prevalent in most trees, and some years-1992, 1999, and 2006-had a particularly high frequency of missing rings across the plantation. Trees from local seed sources (<55 km away from the plantation) had a significantly smaller percentage of missing rings from 1980-2009 (mean: 5.0%), relative to northernmost and southernmost sources (mean: 9.3% and 7.9%, respectively). Some years with a high frequency of missing rings coincide with outbreaks of defoliating insects or dry growing season conditions. The propensity for missing rings synchronized annual variations in growth across all trees and might have complicated the detection of potential differences in interannual variability among seed sources. Average ring width was significantly larger in seed sources from both the southernmost and warmest origins compared to the northernmost and coldest seed sources in most years. Local seed sources had the highest average radial growth. Adaptation to local environmental conditions and disturbances might have influenced the higher growth rate found in local seed sources. These findings underscore the need to understand the integrative impact of multiple environmental drivers, such as disturbance agents and climate change, on tree growth, forest dynamics, and the carbon cycle.

Missing Rings, Synchronous Growth, and Ecological Disturbance in a 36-Year Pitch Pine (Pinus rigida) Provenance Study

PubMed Central

Leland, Caroline; Hom, John; Skowronski, Nicholas; Krusic, Paul J.; Cook, Edward R.; Martin-Benito, Dario; Martin-Fernandez, Javier; Pederson, Neil

2016-01-01

Provenance studies are an increasingly important analog for understanding how trees adapted to particular climatic conditions might respond to climate change. Dendrochronological analysis can illuminate differences among trees from different seed sources in terms of absolute annual growth and sensitivity to external growth factors. We analyzed annual radial growth of 567 36-year-old pitch pine (Pinus rigida Mill.) trees from 27 seed sources to evaluate their performance in a New Jersey Pine Barrens provenance experiment. Unexpectedly, missing rings were prevalent in most trees, and some years—1992, 1999, and 2006—had a particularly high frequency of missing rings across the plantation. Trees from local seed sources (<55 km away from the plantation) had a significantly smaller percentage of missing rings from 1980–2009 (mean: 5.0%), relative to northernmost and southernmost sources (mean: 9.3% and 7.9%, respectively). Some years with a high frequency of missing rings coincide with outbreaks of defoliating insects or dry growing season conditions. The propensity for missing rings synchronized annual variations in growth across all trees and might have complicated the detection of potential differences in interannual variability among seed sources. Average ring width was significantly larger in seed sources from both the southernmost and warmest origins compared to the northernmost and coldest seed sources in most years. Local seed sources had the highest average radial growth. Adaptation to local environmental conditions and disturbances might have influenced the higher growth rate found in local seed sources. These findings underscore the need to understand the integrative impact of multiple environmental drivers, such as disturbance agents and climate change, on tree growth, forest dynamics, and the carbon cycle. PMID:27182599

Defining the "proven technology" technical criterion in the reactor technology assessment for Malaysia's nuclear power program

NASA Astrophysics Data System (ADS)

Anuar, Nuraslinda; Kahar, Wan Shakirah Wan Abdul; Manan, Jamal Abdul Nasir Abd

2015-04-01

Developing countries that are considering the deployment of nuclear power plants (NPPs) in the near future need to perform reactor technology assessment (RTA) in order to select the most suitable reactor design. The International Atomic Energy Agency (IAEA) reported in the Common User Considerations (CUC) document that "proven technology" is one of the most important technical criteria for newcomer countries in performing the RTA. The qualitative description of five desired features for "proven technology" is relatively broad and only provides a general guideline to its characterization. This paper proposes a methodology to define the "proven technology" term according to a specific country's requirements using a three-stage evaluation process. The first evaluation stage screens the available technologies in the market against a predefined minimum Technology Readiness Level (TRL) derived as a condition based on national needs and policy objectives. The result is a list of technology options, which are then assessed in the second evaluation stage against quantitative definitions of CUC desired features for proven technology. The potential technology candidates produced from this evaluation is further narrowed down to obtain a list of proven technology candidates by assessing them against selected risk criteria and the established maximum allowable total score using a scoring matrix. The outcome of this methodology is the proven technology candidates selected using an accurate definition of "proven technology" that fulfills the policy objectives, national needs and risk, and country-specific CUC desired features of the country that performs this assessment. A simplified assessment for Malaysia is carried out to demonstrate and suggest the use of the proposed methodology. In this exercise, ABWR, AP1000, APR1400 and EPR designs assumed the top-ranks of proven technology candidates according to Malaysia's definition of "proven technology".

Signal or noise? Separating grain size-dependent Nd isotope variability from provenance shifts in Indus delta sediments, Pakistan

NASA Astrophysics Data System (ADS)

Jonell, T. N.; Li, Y.; Blusztajn, J.; Giosan, L.; Clift, P. D.

2017-12-01

Rare earth element (REE) radioisotope systems, such as neodymium (Nd), have been traditionally used as powerful tracers of source provenance, chemical weathering intensity, and sedimentary processes over geologic timescales. More recently, the effects of physical fractionation (hydraulic sorting) of sediments during transport have called into question the utility of Nd isotopes as a provenance tool. Is source terrane Nd provenance resolvable if sediment transport strongly induces noise? Can grain-size sorting effects be quantified? This study works to address such questions by utilizing grain size analysis, trace element geochemistry, and Nd isotope geochemistry of bulk and grain-size fractions (<63μm, 63-125 μm, 125-250 μm) from the Indus delta of Pakistan. Here we evaluate how grain size effects drive Nd isotope variability and further resolve the total uncertainties associated with Nd isotope compositions of bulk sediments. Results from the Indus delta indicate bulk sediment ɛNd compositions are most similar to the <63 µm fraction as a result of strong mineralogical control on bulk compositions by silt- to clay-sized monazite and/or allanite. Replicate analyses determine that the best reproducibility (± 0.15 ɛNd points) is observed in the 125-250 µm fraction. The bulk and finest fractions display the worst reproducibility (±0.3 ɛNd points). Standard deviations (2σ) indicate that bulk sediment uncertainties are no more than ±1.0 ɛNd points. This argues that excursions of ≥1.0 ɛNd points in any bulk Indus delta sediments must in part reflect an external shift in provenance irrespective of sample composition, grain size, and grain size distribution. Sample standard deviations (2s) estimate that any terrigenous bulk sediment composition should vary no greater than ±1.1 ɛNd points if provenance remains constant. Findings from this study indicate that although there are grain-size dependent Nd isotope effects, they are minimal in the Indus delta such

Multi-method, multi-scale geophysical observations in the Obsidian Pool Thermal Area, Yellowstone National Park

NASA Astrophysics Data System (ADS)

Holbrook, W. S.; Carr, B.; Pasquet, S.; Sims, K. W. W.; Dickey, K.

2016-12-01

Despite the prominence of Yellowstone as the world's most active hydrothermal province, relatively little is known about the plumbing systems that link deeper hydrothermal fluids to the charismatic hot springs, geysers and mud pots at the surface. We present the results of a multi-method, multi-scale geophysical investigation of the Obsidian Pool Thermal Area (OPTA) in Yellowstone National Park. OPTA hosts acid-sulfate hot springs and mud pots with relatively low pH. We present the results of seismic refraction, electrical resistivity, time-domain EM (TEM), soil conductivity meter (EMI), and GPR data acquired in July 2016. There is a strong contrast in physical properties in the upper 50 m of the subsurface between the low-lying hydrothermal area and surrounding hills: the hydrothermal area has much lower seismic velocities ( 1 km/s vs 3 km/s) and electrical resistivity ( 20 ohm-m vs 300 ohm-m). A prominent zone of very low resistivity (<10 ohm-m) exists at about 20 m depth beneath all hydrothermal features. Poisson's ratio, calculated from P-wave refraction tomography and surface wave inversions, shows low values beneath the "frying pan," where gas is emerging in small fumaroles, suggesting that Poisson's ratio is an effective "gas detector" in hydrothermal areas. Near-surface resistivity mapped from EMI shows a strong correlation with hydrothermal areas previously mapped by heat flow, with areas of high heat flow generally having low resistivity near the surface. Two exceptions are (1) the "frying pan," which shows a central area of high resistivity (corresponding to escaping gas) surrounding by a halo of low resistivity, and (2) a broad area of low resistivity connecting the hydrothermal centers to the lake, which may be clay deposits. TEM data penetrate up to 200 m in depth and suggest that a reservoir of hydrothermal fluids may underlie the entire area, including beneath the forested hills, at depths greater than 100 m, but that they rise toward the surface in

Graphical representations of the chemistry of garnets in a three-dimensional MATLAB based provenance plot

NASA Astrophysics Data System (ADS)

Knierzinger, Wolfgang; Palzer, Markus; Wagreich, Michael; Meszar, Maria; Gier, Susanne

2016-04-01

-29. Suggate, S.M., Hall, R., (2013). Using detrital garnet compositions to determine provenance: a new compositional database and procedure. In: Scott, R.A., Smyth, H.R., Morton, A.C., Richardson, N. (Eds.), Sediment Provenance Studies in Hydrocarbon Exploration and Production. Geological Society of London, Special Publication, 386. http://dx.doi.org/10.1144/SP386.8 Wright, W.I., (1938).The composition and occurrence of garnets. In: American Mineralogist, 23,pp. 436 - 449.

Ten-year performance of ponderosa pine provenances in the Great Plains of North America

Treesearch

Ralph A. Read

1983-01-01

A cluster and discriminant analysis based on nine of the best plantations, partitioned the seed provenance populations into six geographic clusters according to their consistency of performance in the plantations.The Northcentral Nebraska cluster of three provenances performed consistently well above average in all plantations. These easternmost...

S-ProvFlow: provenance model and tools for scalable and adaptive analysis pipelines in geoscience.

NASA Astrophysics Data System (ADS)

Spinuso, A.; Mihajlovski, A.; Atkinson, M.; Filgueira, R.; Klampanos, I.; Sanchez, S.

2017-12-01

The reproducibility of scientific findings is essential to improve the quality and application of modern data-driven research. Delivering such reproducibility is challenging in the context of systems handling large data-streams with sophisticated computational methods. Similarly, the SKA (Square Kilometer Array) will collect an unprecedented volume of radio-wave signals that will have to be reduced and transformed into derived products, with impact on space-weather research. This highlights the importance of having cross-disciplines mechanisms at the producer's side that rely on usable lineage data to support validation and traceability of the new artifacts. To be informative, provenance has to describe each methods' abstractions and their implementation as mappings onto distributed platforms and their concurrent execution, capturing relevant internal dependencies at runtime. Producers and intelligent toolsets should be able to exploit the produced provenance, steering real-time monitoring activities and inferring adaptations of methods at runtime.We present a model of provenance (S-PROV) that extends W3C PROV and ProvONE, broadening coverage of provenance to aspects related to distribution, scale-up and steering of stateful streaming operators in analytic pipelines. This is supported by a technical framework for tuneable and actionable lineage, ensuring its relevance to the users' interests, fostering its rapid exploitation to facilitate research practices. By applying concepts such as provenance typing and profiling, users define rules to capture common provenance patterns and activate selective controls based on domain-metadata. The traces are recorded in a document-store with index optimisation and a web API serves advanced interactive tools (S-ProvFlow, https://github.com/KNMI/s-provenance). These allow different classes of consumers to rapidly explore the provenance data. The system, which contributes to the SKA-Link initiative, within technology and

Reporting on the Strategies Needed to Implement Proven Interventions: An Example From a "Real-World" Cross-Setting Implementation Study.

PubMed

Gold, Rachel; Bunce, Arwen E; Cohen, Deborah J; Hollombe, Celine; Nelson, Christine A; Proctor, Enola K; Pope, Jill A; DeVoe, Jennifer E

2016-08-01

The objective of this study was to empirically demonstrate the use of a new framework for describing the strategies used to implement quality improvement interventions and provide an example that others may follow. Implementation strategies are the specific approaches, methods, structures, and resources used to introduce and encourage uptake of a given intervention's components. Such strategies have not been regularly reported in descriptions of interventions' effectiveness, or in assessments of how proven interventions are implemented in new settings. This lack of reporting may hinder efforts to successfully translate effective interventions into "real-world" practice. A recently published framework was designed to standardize reporting on implementation strategies in the implementation science literature. We applied this framework to describe the strategies used to implement a single intervention in its original commercial care setting, and when implemented in community health centers from September 2010 through May 2015. Per this framework, the target (clinic staff) and outcome (prescribing rates) remained the same across settings; the actor, action, temporality, and dose were adapted to fit local context. The framework proved helpful in articulating which of the implementation strategies were kept constant and which were tailored to fit diverse settings, and simplified our reporting of their effects. Researchers should consider consistently reporting this information, which could be crucial to the success or failure of implementing proven interventions effectively across diverse care settings. clinicaltrials.gov Identifier: NCT02299791. Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.

Multi-Method Provenance Analysis of Namibian Desert Sand

NASA Astrophysics Data System (ADS)

Vermeesch, P.; Garzanti, E.

2014-12-01

Mineralogical, geochemical and geochronological provenance proxies each have their own strengths and weaknesses: a. Bulk geochemistry, framework petrography and heavy mineral compositions can differentiate between source areas characterised by different lithologies, but are sensitive to hydraulic sorting and chemical alteration. b. Detrital zircon U-Pb geochronology is insensitive to winnowing effects, but is 'blind' to lithologies devoid of zircon and cannot differentiate between first cycle and recycled sediments. c. Cosmogenic neon isotopes can be used to identify different generations of surface exposure while simultaneously tracking different magmatic sources. The challenge is then to combine these different proxies into a self consistent story, and do so in as objective a manner as possible. We here present a case study of Namibia's Namib Sand Sea and Skeleton Coast ergs, in which all the aforementioned methods have been combined using a three-way multidimensional scaling (aka INDividual Differences SCALing or INDSCAL) analysis: 1. Each of the datasets was represented by a 'dissimilarity matrix' of pairwise distances between samples. 2. The set of these matrices was fed into the INDSCAL algorithm, which produces two pieces of graphical output: the 'group configuration', which is a scatter plot or 'map' in which similar samples plot close together and dissimilar samples plot far apart, and the 'proxy weights', in which not the samples but the proxies are plotted according to the weight they attached to the 'group configuration' axes. The INDSCAL map of the Namibia dataset indicates that (a) long-shore drift of Orange River sediments dominates the coastal sediment compositions all along the Namibian coast until Angola, and (b) that light and heavy minerals tell complementary parts of the provenance story.

Neurological symptoms in patients with biopsy proven celiac disease.

PubMed

Bürk, Katrin; Farecki, Marie-Louise; Lamprecht, Georg; Roth, Guenter; Decker, Patrice; Weller, Michael; Rammensee, Hans-Georg; Oertel, Wolfang

2009-12-15

In celiac disease (CD), the gut is the typical manifestation site but atypical neurological presentations are thought to occur in 6 to 10% with cerebellar ataxia being the most frequent symptom. Most studies in this field are focused on patients under primary neurological care. To exclude such an observation bias, patients with biopsy proven celiac disease were screened for neurological disease. A total of 72 patients with biopsy proven celiac disease (CD) (mean age 51 +/- 15 years, mean disease duration 8 +/- 11 years) were recruited through advertisements. All participants adhered to a gluten-free diet. Patients were interviewed following a standard questionnaire and examined clinically for neurological symptoms. Medical history revealed neurological disorders such as migraine (28%), carpal tunnel syndrome (20%), vestibular dysfunction (8%), seizures (6%), and myelitis (3%). Interestingly, 35% of patients with CD reported of a history of psychiatric disease including depression, personality changes, or even psychosis. Physical examination yielded stance and gait problems in about one third of patients that could be attributed to afferent ataxia in 26%, vestibular dysfunction in 6%, and cerebellar ataxia in 6%. Other motor features such as basal ganglia symptoms, pyramidal tract signs, tics, and myoclonus were infrequent. 35% of patients with CD showed deep sensory loss and reduced ankle reflexes in 14%. Gait disturbances in CD do not only result from cerebellar ataxia but also from proprioceptive or vestibular impairment. Neurological problems may even develop despite strict adherence to a gluten-free diet. (c) 2009 Movement Disorder Society.

Identifying Provenance of Archaean Basal Conglomerates: An Evidence from Sigegudda and Bababudan Conglomerate Quartzites, India

NASA Astrophysics Data System (ADS)

Mitra, A.; Dey, S.

2017-12-01

Geochemical characteristics of clastic sedimentary rocks deposited and later preserved in ancient supracrustal sequences of Archaean terrain are competent representation of their source rocks in provenance. These rocks usually sample a wide geographic area and bear signature of subsequently destroyed and dismembered terrains. In this study the quartz pebble conglomerate-quartz sandstone association of Sigegudda and Bababudan belt of western Dharwar craton (WDC), Southern India have been studied to understand the nature of their provenance. Both Sigegudda and Bababudan belt represent younger (2.8-2.6 Ga) greenstone sequences of WDC. They start with a prominent band of conglomerate-quartzite lying over Palaeo to Meso Archaean Peninsular Gneiss (3.35-3.29 Ga) with older Sargur greentone (3.35-3.28 Ga) enclaves along an unconformity. Here, we present a comprehensive provenance (mainly source rock characterization) study of major and trace element composition of low to moderately metamorphosed basal siliciclastics of the younger greenstone sequences of WDC. Chemically they are enriched in Th, U, HFSE (Hf, Nb, Zr) and depleted in Sc, Co, Cr and Eu content with elevated La/Sc and Th/Sc values depicting a differentiated felsic source. This is further supported by fractionated LREE (10.64 - 14.66), significant negative Eu anomaly (0.67 - 0.55) and nearly flat HREE indicating granitoid rocks as source. In La-Th-Cr/100 and La-Th-Sc triangular diagram, quartz arenite field overlap with the Peninsular Gneiss and plotted far away from the mafic-ultramafics of Sargur. The chemical index of alteration (CIA) values of arenites of Sigegudda (71) and Bababudan (75), Peninsular Gneisses (avg-50) and Sargur group (avg-30) implies their derivation from the underlying gneisses associated with a prolonged weathering. The presence of a thick conglomerate-quartz sandstone association with differently sized quartz in their framework and matrix, depicts the development of a stable craton in

Genetic variation of whitebark pine (Pinus albicaulis) provenances and families from Oregon and Washington in juvenile height growth and needle color

Treesearch

Jim Hamlin; Angelia Kegley; Richard Sniezko

2011-01-01

A three year common garden study was conducted on whitebark pine (Pinus albicaulis) which included 215 families from the eight provenances or seed zones in Oregon and Washington. Total height and needle color were assessed. Height differed significantly among provenances and families, and was primarily associated with source elevation, longitude, and precipitation. A...

Archaeological Mitigation of AR-102.

DTIC Science & Technology

1978-07-16

obsidian is especially noticeable. Roxey and Tully noted three discrete lithic areas on this slope adjacent to the fence (see map). The first area was...Polvadera Peak obsidian . These I I I 1 I I II Ii -6- [I points were probably lost during hunts on the slope. Several bifacial knives with heavy...of Polvadera Peak obsidian , the only concentration of this material observed in the survey area. There are small flakes, shatter and similar debitage

Underestimation of malignancy in biopsy-proven cases of stromal fibrosis

PubMed Central

Lad, S; Seely, J M; Schweitzer, M E

2014-01-01

Objective: To determine the rate of underestimation of malignancy in patients with biopsy-proven stromal fibrosis. Methods: Following institutional review board approval, we retrospectively reviewed the charts of patients with biopsy-proven stromal fibrosis who underwent percutaneous breast biopsy in the 5-year period between 1 January 2005 and 31 December 2009. The medical records and the histopathology in patients who underwent repeat biopsy and/or surgical excision at the site of stromal fibrosis within 2 years were reviewed. Interval stability for up to 2 years was documented in patients who did not undergo additional biopsy or surgical excision. An upgrade was defined as any patient with biopsy-proven stromal fibrosis or fibroadenoma with evidence of malignancy at the site of biopsy within 2 years. Results: 365 cases of stromal fibrosis were identified, of which 25 (7%) were upgraded to in situ or invasive malignancy on repeat biopsy or surgical excision. 7 were upgraded to ductal carcinoma in situ and 18 were upgraded to invasive cancer. Of the upgraded cases, 8 out of 24 (32%) were considered concordant with a benign diagnosis. The false-negative rate, that is, cases of stromal fibrosis concordant with benignity, but with subsequent upgrade, comprised 2% of all cases. Conclusion: In biopsy-proven cases of stromal fibrosis, there is a 7% upgrade to malignancy. We recommend that all instances of stromal fibrosis with radiology–pathology discordance undergo repeat biopsy or surgical excision. Cases that demonstrate radiology–pathology concordance can be safely categorized as a Breast Imaging Reporting and Data System 3 (BI-RADS® 3) lesion with a 6-month follow-up, owing to a false-negative rate for missed cancer of 2%. Advances in knowledge: We now recommend that concordant cases of stromal fibrosis be categorized as BI-RADS 3 with a short-term follow-up, as this results in a missed cancer rate of 2%. PMID:24846442

Efficacy and safety of micafungin for the treatment of patients with proven or probable invasive aspergillosis: A non-comparative, multicenter, phase IV, open-label study.

PubMed

Ji, Yu; Song, Yongping; Zhou, Fang; Liu, Ting; Jiang, Ming; Zhao, Xielan; Huang, Xiaojun

2017-12-01

Few studies have assessed the efficacy and safety of micafungin in patients with proven or probable invasive aspergillosis (IA). This was the aim of the current study, which was conducted in 22 hospitals in China, where micafungin was approved for treatment of IA in 2006. This was a non-comparative, phase IV open-label study (NCT02646774). Eligible patient were adults with proven or probable IA. Efficacy endpoints included rates of overall treatment success (primary endpoint) and clinical improvement, fungal clearance, mortality, and the site of Aspergillus infection (all secondary endpoints). Safety endpoints included incidences of treatment-emergent adverse events (TEAEs), serious AEs (SAEs), and adverse drug reactions (ADRs). These endpoints were reported descriptively with associated 95% confidence intervals (CI); no hypotheses were tested. The study was discontinued early due to low patient recruitment, which did not allow for the planned sample size to be reached. In total, 68 patients were enrolled: 42 into the full analysis set (for efficacy) and 61 into the safety analysis set. All patients were Han Chinese; the majority were male (n = 26; 61.9%) and ≤60 years of age (n = 35; 83.3%). Rates of overall treatment success, clinical improvement, fungal clearance, and mortality were 45.2% (n = 19/42; 95% CI: 29.85-61.33); 59.5% (n = 25/42; 95% CI: 43.28-74.37), 80.0% (n = 4/5; 95% CI: 28.36-99.49), and 7.1% (n = 3/42; 95% CI: 1.50-19.48), respectively. All patients were diagnosed with pulmonary Aspergillus infection. Overall, 155 TEAEs and 8 SAEs were reported by 37 (60.7%) and 7 (11.5%) patients. The most common TEAEs were decreased platelet count and fatigue (both n = 5; 8.2%) and the most common SAEs were intracranial hemorrhage and lung infection (n = 3; 4.9% and n = 2; 3.3%). Eight ADRs (n = 6; 9.8%) were reported but all were completely remitted or remitting during follow-up. Results suggest that micafungin is

Character of the opposition effect and negative polarization

NASA Technical Reports Server (NTRS)

Pieters, Carle M.; Shkuratov, Yu. G.; Stankevich, D. G.

1991-01-01

Photometric and polarimetric properties at small phase angles were measured for silicates with controlled surface properties in order to distinguish properties that are associated with surface reflection from those that are associated with multiple scattering from internal grain boundaries. These data provide insight into the causes and conditions of photometric properties observed at small phase angles for dark bodies of the solar system. Obsidian was chosen to represent a silicate dielectric with no internal scattering boundaries. Because obsidian is free of internal scatterers, light reflected from both the rough and smooth obsidian samples is almost entirely single and multiple Fresnel reflections form surface facets with no body component. Surface structure alone cannot produce an opposition effect. Comparison of the obsidian and basalt results indicates that for an opposition effect to occur, surface texture must be both rough and contain internal scattering interfaces. Although the negative polarization observed for the obsidian samples indicates single and multiple reflections are part of negative polarization, the longer inversion angle of the multigrain inversion samples implies that internal reflections must also contribute a significant negative polarization component.

Survival and growth of two intensively cultured jack pine provenances raised in Tubepak and Jiffy 7 containers

Treesearch

J. Zavitkovski; Howard M. Phipps

1983-01-01

Container type, provenance, and spacing affect survival, height and d.b.h, growth, and biomass production of intensively cultured jack pine. The Lower Michigan provenance and Tubepak grown plants performed better than the local (Wisconsin) provenance and plants raised in Jiffy 7 pellets. At age 5, biomass of Tubepak plantings was more than 100% higher than that of...

Testing palaeotectonic models for the Internal Hellenides with sediment provenance

NASA Astrophysics Data System (ADS)

Meinhold, G.

2009-04-01

The Internal Hellenides of Greece are a result of the Alpine-Himalayan orogen. The relationships between different pre-Alpine crustal fragments of the Internal Hellenides are now masked by younger (Mesozoic to Cenozoic) complex structural and metamorphic events. This, together with the scarcity of biostratigraphic, geochronological and palaeomagnetic data, has given rise to equivocal palaeotectonic models and interpretations. However, the age and origin of pre-Alpine basement units in the Internal Hellenides has important implications for our in-depth understanding of the evolution of North Gondwana-derived terranes and consequently for alternative palaeotectonic reconstructions for the Palaeozoic and Mesozoic. A multidisciplinary sediment provenance study was undertaken since sedimentary rocks can provide information about rock lithologies in the source area, which have often been destroyed and recycled during ancient plate tectonic processes. Palaeozoic and Mesozoic sedimentary rocks from key areas of the Internal Hellenides were analysed using whole-rock major- and trace-element geochemistry (XRF, ICPMS), detrital chrome spinel, garnet, white mica and rutile chemistry (EMP), detrital zircon geochronology (SHRIMP, LA-ICPMS) and biostratigraphic analysis. These new data are used to constrain terrane accretion processes and the provenance of crustal sources for sediments during Palaeozoic and Mesozoic times and thus will test palaeotectonic models for the Internal Hellenides. This is expected to shed light on the Palaeo- and Neotethyan evolution in the Eastern Mediterranean.

Provenance analysis of the Voirons Flysch (Gurnigel nappe, Haute-Savoie, France): stratigraphic and palaeogeographic implications

NASA Astrophysics Data System (ADS)

Ragusa, Jérémy; Kindler, Pascal; Segvic, Branimir; Ospina-Ostios, Lina Maria

2017-04-01

The Chablais Prealps (Haute-Savoie, France) represent a well-preserved accretionary wedge of the Western Alpine Tethys. They comprise a stack of sedimentary nappes related to palaeogeographic realms ranging from the Ultrahelvetic to the Southern Penninic. The provenance analysis is based on the Gazzi-Dickinson method and on QEMSCAN® for heavy-minerals. The Quartzose petrofacies is the most important of the two sources, and supplied three of the four formations of the Voirons Flysch. It is similar to the sources that fed the other flyschs from the Gurnigel nappe. It is characterised by a mature, quartz-rich assemblage and a heavy-mineral population dominated by apatite and the zircon-tourmaline-rutile mineral group. These observations suggest a Clastic wedge provenance. The Feldspathic petrofacies is derived from a feldspar-rich source associated with metamorphic clasts and a heavy-mineral population dominated by garnet. This provenance characterises only one formation of the Voirons Flysch, and is related to the axial belt provenance. This provenance analysis shows that the Middle Eocene to Early Oligocene Voirons Flysch was fed by two sources, in contrast to the other flyschs of the Gurnigel nappe, and further suggests that this flysch was not deposited in the Piemont Ocean but in the Valais domain. Based on the results and comparative provenance analysis with the other flyschs of the Gurnigel nappe, we propose a generic feeding model which involves the Sesia-Dent Blanche nappe, the sedimentary nappes incorporated in the accretionary prism, and probably the Briançonnais basement.

Targeted versus statistical approaches to selecting parameters for modelling sediment provenance

NASA Astrophysics Data System (ADS)

Laceby, J. Patrick

2017-04-01

One effective field-based approach to modelling sediment provenance is the source fingerprinting technique. Arguably, one of the most important steps for this approach is selecting the appropriate suite of parameters or fingerprints used to model source contributions. Accordingly, approaches to selecting parameters for sediment source fingerprinting will be reviewed. Thereafter, opportunities and limitations of these approaches and some future research directions will be presented. For properties to be effective tracers of sediment, they must discriminate between sources whilst behaving conservatively. Conservative behavior is characterized by constancy in sediment properties, where the properties of sediment sources remain constant, or at the very least, any variation in these properties should occur in a predictable and measurable way. Therefore, properties selected for sediment source fingerprinting should remain constant through sediment detachment, transportation and deposition processes, or vary in a predictable and measurable way. One approach to select conservative properties for sediment source fingerprinting is to identify targeted tracers, such as caesium-137, that provide specific source information (e.g. surface versus subsurface origins). A second approach is to use statistical tests to select an optimal suite of conservative properties capable of modelling sediment provenance. In general, statistical approaches use a combination of a discrimination (e.g. Kruskal Wallis H-test, Mann-Whitney U-test) and parameter selection statistics (e.g. Discriminant Function Analysis or Principle Component Analysis). The challenge is that modelling sediment provenance is often not straightforward and there is increasing debate in the literature surrounding the most appropriate approach to selecting elements for modelling. Moving forward, it would be beneficial if researchers test their results with multiple modelling approaches, artificial mixtures, and multiple

Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park

PubMed Central

2013-01-01

Background A single cultured marine organism, Nanoarchaeum equitans, represents the Nanoarchaeota branch of symbiotic Archaea, with a highly reduced genome and unusual features such as multiple split genes. Results The first terrestrial hyperthermophilic member of the Nanoarchaeota was collected from Obsidian Pool, a thermal feature in Yellowstone National Park, separated by single cell isolation, and sequenced together with its putative host, a Sulfolobales archaeon. Both the new Nanoarchaeota (Nst1) and N. equitans lack most biosynthetic capabilities, and phylogenetic analysis of ribosomal RNA and protein sequences indicates that the two form a deep-branching archaeal lineage. However, the Nst1 genome is more than 20% larger, and encodes a complete gluconeogenesis pathway as well as the full complement of archaeal flagellum proteins. With a larger genome, a smaller repertoire of split protein encoding genes and no split non-contiguous tRNAs, Nst1 appears to have experienced less severe genome reduction than N. equitans. These findings imply that, rather than representing ancestral characters, the extremely compact genomes and multiple split genes of Nanoarchaeota are derived characters associated with their symbiotic or parasitic lifestyle. The inferred host of Nst1 is potentially autotrophic, with a streamlined genome and simplified central and energetic metabolism as compared to other Sulfolobales. Conclusions Comparison of the N. equitans and Nst1 genomes suggests that the marine and terrestrial lineages of Nanoarchaeota share a common ancestor that was already a symbiont of another archaeon. The two distinct Nanoarchaeota-host genomic data sets offer novel insights into the evolution of archaeal symbiosis and parasitism, enabling further studies of the cellular and molecular mechanisms of these relationships. Reviewers This article was reviewed by Patrick Forterre, Bettina Siebers (nominated by Michael Galperin) and Purification Lopez-Garcia PMID:23607440

Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park.

PubMed

Podar, Mircea; Makarova, Kira S; Graham, David E; Wolf, Yuri I; Koonin, Eugene V; Reysenbach, Anna-Louise

2013-04-22

A single cultured marine organism, Nanoarchaeum equitans, represents the Nanoarchaeota branch of symbiotic Archaea, with a highly reduced genome and unusual features such as multiple split genes. The first terrestrial hyperthermophilic member of the Nanoarchaeota was collected from Obsidian Pool, a thermal feature in Yellowstone National Park, separated by single cell isolation, and sequenced together with its putative host, a Sulfolobales archaeon. Both the new Nanoarchaeota (Nst1) and N. equitans lack most biosynthetic capabilities, and phylogenetic analysis of ribosomal RNA and protein sequences indicates that the two form a deep-branching archaeal lineage. However, the Nst1 genome is more than 20% larger, and encodes a complete gluconeogenesis pathway as well as the full complement of archaeal flagellum proteins. With a larger genome, a smaller repertoire of split protein encoding genes and no split non-contiguous tRNAs, Nst1 appears to have experienced less severe genome reduction than N. equitans. These findings imply that, rather than representing ancestral characters, the extremely compact genomes and multiple split genes of Nanoarchaeota are derived characters associated with their symbiotic or parasitic lifestyle. The inferred host of Nst1 is potentially autotrophic, with a streamlined genome and simplified central and energetic metabolism as compared to other Sulfolobales. Comparison of the N. equitans and Nst1 genomes suggests that the marine and terrestrial lineages of Nanoarchaeota share a common ancestor that was already a symbiont of another archaeon. The two distinct Nanoarchaeota-host genomic data sets offer novel insights into the evolution of archaeal symbiosis and parasitism, enabling further studies of the cellular and molecular mechanisms of these relationships. This article was reviewed by Patrick Forterre, Bettina Siebers (nominated by Michael Galperin) and Purification Lopez-Garcia.

How the provenance of electronic health record data matters for research: a case example using system mapping.

PubMed

Johnson, Karin E; Kamineni, Aruna; Fuller, Sharon; Olmstead, Danielle; Wernli, Karen J

2014-01-01

The use of electronic health records (EHRs) for research is proceeding rapidly, driven by computational power, analytical techniques, and policy. However, EHR-based research is limited by the complexity of EHR data and a lack of understanding about data provenance, meaning the context under which the data were collected. This paper presents system flow mapping as a method to help researchers more fully understand the provenance of their EHR data as it relates to local workflow. We provide two specific examples of how this method can improve data identification, documentation, and processing. EHRs store clinical and administrative data, often in unstructured fields. Each clinical system has a unique and dynamic workflow, as well as an EHR customized for local use. The EHR customization may be influenced by a broader context such as documentation required for billing. We present a case study with two examples of using system flow mapping to characterize EHR data for a local colorectal cancer screening process. System flow mapping demonstrated that information entered into the EHR during clinical practice required interpretation and transformation before it could be accurately applied to research. We illustrate how system flow mapping shaped our knowledge of the quality and completeness of data in two examples: (1) determining colonoscopy indication as recorded in the EHR, and (2) discovering a specific EHR form that captured family history. Researchers who do not consider data provenance risk compiling data that are systematically incomplete or incorrect. For example, researchers who are not familiar with the clinical workflow under which data were entered might miss or misunderstand patient information or procedure and diagnostic codes. Data provenance is a fundamental characteristic of research data from EHRs. Given the diversity of EHR platforms and system workflows, researchers need tools for evaluating and reporting data availability, quality, and

Applications of biotite inclusion composition to zircon provenance determination

NASA Astrophysics Data System (ADS)

Bell, Elizabeth A.; Boehnke, Patrick; Mark Harrison, T.

2017-09-01

Detrital zircons are the only confirmed surviving remnants of >4.03 Ga crust while younger detrital zircons provide a parallel record of more recent crustal evolution to that preserved in crystalline rocks. Zircons often preserve inclusions that may provide clues as to the origins of out-of-context grains in the sedimentary record. Previous studies have established that inclusions of biotite in magmatic zircon are compositionally well-matched to biotite in the source rock matrix, although a direct application to ancient detrital zircons has not been made. A number of studies have documented variations in the Fe, Mg, and Al contents of magmatic biotite from different source rocks and tectonic settings, suggesting that biotite inclusions may indeed serve as provenance indicators for detrital zircons. Consistent with earlier studies, we find that the FeO*/MgO ratio of magmatic biotite from continental arcs, collisional, and within-plate settings varies with relative oxidation state as well as whole-rock FeO*/MgO, while its Al2O3/(FeO* + MgO) varies with whole-rock A/CNK (molar Al/(2 ṡ Ca + Na + K)). Biotite from oxidized metaluminous and reduced S-type granitoids can be readily distinguished from each other using FeO*/MgO and Al2O3/(FeO* + MgO), while biotite from reduced I-type and oxidized peraluminous granites may in some cases be more ambiguous. Biotite from peralkaline and reduced A-type granites are also distinguishable from all other categories by Al2O3/(FeO* + MgO) and FeO*/MgO, respectively. Biotite inclusions in Hadean zircons from Jack Hills, Western Australia indicate a mixture of metaluminous and reduced S-type host rocks, while inclusions in 3.6-3.8 Ga detrital zircons from the Nuvvuagittuq Supracrustal Belt indicate more oxidized peraluminous magmas. These results highlight the diversity of felsic materials on the early Earth and suggest that biotite inclusions are applicable to zircon provenance throughout the sedimentary record.

Features of Scots pine radial growth in conditions of provenance trial

NASA Astrophysics Data System (ADS)

Kuzmin, S.

2012-12-01

Provenance trial of Scots pine in Boguchany forestry of Krasnoyarsk krai is conducted on two different soils - dark-grey loam forest soil and sod-podzol sandy soil. Complex of negative factors for plant growth and development appears in dry conditions of sandy soil. It could results in decrease of resistance to diseases. Sandy soils in different climatic zones have such common traits as low absorbing capacity, poorness of elemental nutrition, low microbiological activity and moisture capacity, very high water permeability. But Scots pine trees growing in such conditions could have certain advantages and perspectives of use. In the scope of climate change (global warming) the study of Scots pine growth on sandy soil become urgent because of more frequent appearance of dry seasons. Purpose of the work is revelation of radial growth features of Scots pine with different origin in dry conditions of sandy soil and assessment of external factors influence. The main feature of radial growth of majority of studied pine provenances in conditions of sandy soil is presence of significant variation of increment with distinct decline in 25-years old with loss of tree rings in a number of cases. The reason of it is complex of factors: deficit of June precipitation and next following outbreak of fungal disease. Found «frost rings» for all trees of studied clymatypes in 1992 are the consequence of temperature decline from May 21 to June 2 - from 23 C degrees up to 2 C. Perspective climatypes with biggest radial increments and least sensitivity to fungal disease were revealed.

External-beam PIXE spectrometry for the study of Punic jewellery (SW Spain): The geographical provenance of the palladium-bearing gold

NASA Astrophysics Data System (ADS)

Ontalba Salamanca, M. Á.; Gómez-Tubío, B.; Ortega-Feliu, I.; Respaldiza, M. Á.; Luisa de la Bandera, M.; Ovejero Zappino, G.; Bouzas, A.; Gómez-Morón, A.

2006-08-01

This paper presents the study of a set of Punic gold items (400 B.C.), from the Museum of Cádiz (Spain). An external beam set-up has been employed for the absolutely non-destructive analysis of the objects. PIXE spectrometry has been performed in order to characterize the metallic alloys and the manufacturing techniques. Compositional differences have been found and soldering procedures have been identified. By comparison with the rings and other coetaneous jewellery, the presence of palladium in the bulk alloy of the earrings can be pointed out. The geographical provenance of the palladium-bearing gold is discussed based on geological and archaeological considerations.

Foliar nitrogen metabolism of adult Douglas-fir trees is affected by soil water availability and varies little among provenances.

PubMed

Du, Baoguo; Kreuzwieser, Jürgen; Dannenmann, Michael; Junker, Laura Verena; Kleiber, Anita; Hess, Moritz; Jansen, Kirstin; Eiblmeier, Monika; Gessler, Arthur; Kohnle, Ulrich; Ensminger, Ingo; Rennenberg, Heinz; Wildhagen, Henning

2018-01-01

The coniferous forest tree Douglas-fir (Pseudotsuga menziesii) is native to the pacific North America, and is increasingly planted in temperate regions worldwide. Nitrogen (N) metabolism is of great importance for growth, resistance and resilience of trees. In the present study, foliar N metabolism of adult trees of three coastal and one interior provenance of Douglas-fir grown at two common gardens in southwestern Germany (Wiesloch, W; Schluchsee, S) were characterized in two subsequent years. Both the native North American habitats of the seed sources and the common garden sites in Germany differ in climate conditions. Total and mineral soil N as well as soil water content were higher in S compared to W. We hypothesized that i) provenances differ constitutively in N pool sizes and composition, ii) N pools are affected by environmental conditions, and iii) that effects of environmental factors on N pools differ among interior and coastal provenances. Soil water content strongly affected the concentrations of total N, soluble protein, total amino acids (TAA), arginine and glutamate. Foliar concentrations of total N, soluble protein, structural N and TAA of trees grown at W were much higher than in trees at S. Provenance effects were small but significant for total N and soluble protein content (interior provenance showed lowest concentrations), as well as arginine, asparagine and glutamate. Our data suggest that needle N status of adult Douglas-fir is independent from soil N availability and that low soil water availability induces a re-allocation of N from structural N to metabolic N pools. Small provenance effects on N pools suggest that local adaptation of Douglas-fir is not dominated by N conditions at the native habitats.

A detrital zircon provenance study of the Lower Carboniferous sequences in the East Fife section of the Midland Valley of Scotland

NASA Astrophysics Data System (ADS)

Murchie, Sean; Robinson, Ruth, ,, Dr; Lancaster, Penelope, ,, Dr

2014-05-01

Detrital zircons from the Lower Carboniferous clastic rocks of the Midland Valley of Scotland have been dated using U-Pb laser ablation inductively coupled plasma mass spectrometry (LA-ICPMS) to determine which source areas contributed sediment to the basin during its development, and to investigate whether provenance changed during deposition of these units. Specific provenance detection using U/Pb dating of zircons has never been attempted in these rocks, and there are uncertainties remaining about the regional paleogeographic setting for the Midland Valley. Four samples from the Dinantian Strathclyde Group have been analysed, and the units are locally known as the Fife Ness, Anstruther, Pittenweem, Sandy Craig, and Pathhead formations. The formations are composed of shallow marine, deltaic, fluvial and floodplain deposits and these predominantly siliciclastic sedimentary rocks are interbedded with thin fossiliferous carbonate bands. The samples are quartz arenitic, sub-arkosic and lithic arkosic medium-grained sandstones, predominantly from a fluvial origin. The British Geological Survey developed a lithostratigraphy which is the most used framework for the Strathclyde Group (Browne et al., 1997), but a different biostratigraphical framework based on palynology has been proposed by Owens et al. (2005). In addition to identifying provenance, the zircon age populations for each formation are compared to test which stratigraphic framework is correct. More broadly, the provenance data provides a way to improve the regional palaeogeographic setting for the Midland Valley. Zircon ages in the Strathclyde Group are dominated by Late Mesoproterozoic to Late Palaeoproterozoic (0.9 - 2.0 Ga) and Early Palaeozoic (350 - 450 Ma) ages which reflect Caledonide (Laurentian-Baltica margin including Scotland, Scandinavia, Greenland, Newfoundland), Grampian and internal Midland Valley source areas. Notable peaks occur at 400 Ma, 1.0 --1.1 Ga, 1.3 Ga, 1.6 - 1.7 Ga, and 2.7 Ga, and

Antral follicle count in normal (fertility-proven) and infertile Indian women.

PubMed

Agarwal, Arjit; Verma, Ashish; Agarwal, Shubhra; Shukla, Ram Chandra; Jain, Madhu; Srivastava, Arvind

2014-07-01

Antral follicle count (AFC) has been labeled as the most accurate biomarker to assess female fecundity. Unfortunately, no baseline Indian data exists, and we continue using surrogate values from the Western literature (inferred from studies on women, grossly different than Indian women in morphology and genetic makeup). (1) To establish the role of AFC as a function of ovarian reserve in fertility-proven and in subfertile Indian women. (2) To establish baseline cut-off AFC values for Indian women. Prospective observational case-control study. Thirty patients undergoing workup for infertility were included and compared to equal number of controls (women with proven fertility). The basal ovarian volume and AFC were measured by endovaginal. USG the relevant clinical data and hormonal assays were charted for every patient. SPSS platform was used to perform the Student's t-test and Mann-Whitney U-test for intergroup comparisons. Correlations were determined by Pearson's ranked correlation coefficient. Regression analysis revealed the highest correlation of AFC and age in fertile and infertile patients with difference in mean AFC of both the groups. Comparison of the data recorded for cases and controls showed no significant difference in the mean ovarian volume. AFC has the closest association with chronological age in normal and infertile Indian women. The same is lower in infertile women than in matched controls. Baseline and cut-off values in Indian women are lower than that mentioned in the Western literature.

Provenance information as a tool for addressing engineered nanoparticle reproducibility challenges

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baer, Donald R.; Munusamy, Prabhakaran; Thrall, Brian D.

Nanoparticles of various types are of increasing research and technological importance in biological and other applications. Difficulties in the production and delivery of nanoparticles with consistent and well defined properties appear in many forms and have a variety of causes. Among several issues are those associated with incomplete information about the history of particles involved in research studies including the synthesis method, sample history after synthesis including time and nature of storage and the detailed nature of any sample processing or modification. In addition, the tendency of particles to change with time or environmental condition suggests that the time betweenmore » analysis and application is important and some type of consistency or verification process can be important. The essential history of a set of particles can be identified as provenance information tells the origin or source of a batch of nano-objects along with information related to handling and any changes that may have taken place since it was originated. A record of sample provenance information for a set of particles can play a useful role in identifying some of the sources and decreasing the extent of particle variability and the observed lack of reproducibility observed by many researchers.« less

Trinidad Reservoir Salvage Archaeology, 1963-1965,

DTIC Science & Technology

1974-10-01

composition of 76 of the above 76 specimens is argillite; one nonutilized flake is of obsidian , another nonutilized flake is of quartzite. Argillite...utilization as tools. Petrographically, 55 are argillite, one is obsidian and one is a coarae-grained quartzite. Seventeen (all argillite) are large...24 Argillite Crude; Pit I; Concave ba 1.2+ 1.1 0.3 D/14AAA/0-6 Quartizite 1.6+ 1.4 0.3 Surface Obsidian 1.5+ 1.2 0.4 Surface Argillite 2.0+ 1.5 0.3

Provenance and paleogeography of the Devonian Durazno Group, southern Parana Basin in Uruguay

NASA Astrophysics Data System (ADS)

Uriz, N. J.; Cingolani, C. A.; Basei, M. A. S.; Blanco, G.; Abre, P.; Portillo, N. S.; Siccardi, A.

2016-03-01

A succession of Devonian cover rocks occurs in outcrop and in the subsurface of central-northern Uruguay where they were deposited in an intracratonic basin. This Durazno Group comprises three distinct stratigraphic units, namely the Cerrezuelo, Cordobés and La Paloma formations. The Durazno Group does not exceed 300 m of average thickness and preserves a transgressive-regressive cycle within a shallow-marine siliciclastic shelf platform, and is characterized by an assemblage of invertebrate fossils of Malvinokaffric affinity especially within the Lower Devonian Cordobés shales. The sedimentary provenance of the Durazno Group was determined using petrography, geochemistry, and morphological studies of detrital zircons as well as their U-Pb ages. Sandstone petrography of Cerrezuelo and La Paloma sequences shows that they have a dominantly quartz-feldspathic composition with a minor contribution of other minerals. Whole-rock geochemical data indicate that alteration was strong in each of the three formations studied; chondritic-normalized REE patterns essentially parallel to PAAS, the presence of a negative Eu-anomaly, and Th/Sc and La/Hf ratios point to an average source composition similar to UCC or slightly more felsic. Within the Cerrezuelo Formation, recycling of older volcano-metasedimentary sources is interpreted from Zr/Sc ratios and high Hf, Zr, and REE concentrations. U-Pb detrital zircon age populations of the Cerrezuelo and La Paloma formations indicate that the principal source terranes are of Neoproterozoic age, but include also minor populations derived from Mesoproterozoic and Archean-Paleoproterozoic rocks. A provenance from the Cuchilla Dionisio-Dom Feliciano, Nico Pérez and Piedra Alta terranes of Uruguay and southern Brazil is likely. This study establishes an intracratonic extensional tectonic setting during Durazno time. Considering provenance age sources, regional paleocurrent distributions and the established orogenic history recorded in SW

Quantitative Metrics for Provenance in the Global Change Information System

NASA Astrophysics Data System (ADS)

Sherman, R. A.; Tipton, K.; Elamparuthy, A.

2017-12-01

The Global Change Information System (GCIS) is an open-source web-based resource to provide traceable provenance for government climate information, particularly the National Climate Assessment and other climate science reports from the U.S. Global Change Research Program. Since 2014, GCIS has been adding and updating information and linking records to make the system as complete as possible for the key reports. Our total count of records has grown to well over 20,000, but until recently there hasn't been an easy way to measure how well all those records were serving the mission of providing provenance. The GCIS team has recently established quantitative measures of whether each record has sufficient metadata and linkages to be useful for users of our featured climate reports. We will describe our metrics and show how they can be used to guide future development of GCIS and aid users of government climate data.

Genetic variation in ponderosa pine: A 15-year test of provenances in the Great Plains

Treesearch

David F. Van Haverbeke

1986-01-01

Survival was highest and height growth greatest in ponderosa pine provenances from northcentral Nebraska, southwest South Dakota, and the High Plains region. Genotype x environment interaction was minimal in central and northern Great Plains plantations. Age/age correlations indicate provenances expressing superior height growth can be identified after 5 or 10 years....

Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mead, David; Lucas, Susan; Copeland, A

2012-01-01

Paenibacillus speciesY412MC10 was one of a number of organisms initially isolated from Obsidian Hot Spring, Yellowstone National Park, Montana, USA. The isolate Y412MC10 was initially classified as a Geobacillus sp. based on its isolation conditions and similarity to other organisms isolated from hot springs at Yellowstone National Park. Comparison of 16 S rRNA sequences within the Bacillales indicated that Geobacillus sp.Y412MC10 clustered with Paenibacillus species and not Geobacillus; the 16S rRNA analysis indicated the organism was a strain of Paenibacillus lautus. Lucigen Corp. prepared genomic DNA and the genome was sequenced, assembled, and annotated by the DOE Joint Genome Institute.more » The genome of Paenibacillus lautus strain Y412MC10 consists of one circular chromosome of 7,121,665 bp with an average G+C content of 51.2%. The Paenibacillus sp.Y412MC10 genome sequence was deposited at the NCBI in October 2009 (NC{_}013406). Comparison to other Paenibacillus species shows the organism lacks nitrogen fixation, antibiotic production and social interaction genes reported in other Paenibacilli. Over 25% of the proteins predicted by the Y412MC10 genome share no identity with the closest sequenced Paenibacillus species; most of these are predicted hypothetical proteins and their specific function in the environment is unknown.« less

Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park

PubMed Central

Mead, David A.; Lucas, Susan; Copeland, Alex; Lapidus, Alla; Cheng, Jan-Feng; Bruce, David C.; Goodwin, Lynne A.; Pitluck, Sam; Chertkov, Olga; Zhang, Xiaojing; Detter, John C.; Han, Cliff S.; Tapia, Roxanne; Land, Miriam; Hauser, Loren J.; Chang, Yun-juan; Kyrpides, Nikos C.; Ivanova, Natalia N.; Ovchinnikova, Galina; Woyke, Tanja; Brumm, Catherine; Hochstein, Rebecca; Schoenfeld, Thomas; Brumm, Phillip

2012-01-01

Paenibacillus sp.Y412MC10 was one of a number of organisms isolated from Obsidian Hot Spring, Yellowstone National Park, Montana, USA under permit from the National Park Service. The isolate was initially classified as a Geobacillus sp. Y412MC10 based on its isolation conditions and similarity to other organisms isolated from hot springs at Yellowstone National Park. Comparison of 16 S rRNA sequences within the Bacillales indicated that Geobacillus sp.Y412MC10 clustered with Paenibacillus species, and the organism was most closely related to Paenibacillus lautus. Lucigen Corp. prepared genomic DNA and the genome was sequenced, assembled, and annotated by the DOE Joint Genome Institute. The genome sequence was deposited at the NCBI in October 2009 (NC_013406). The genome of Paenibacillus sp. Y412MC10 consists of one circular chromosome of 7,121,665 bp with an average G+C content of 51.2%. Comparison to other Paenibacillus species shows the organism lacks nitrogen fixation, antibiotic production and social interaction genes reported in other paenibacilli. The Y412MC10 genome shows a high level of synteny and homology to the draft sequence of Paenibacillus sp. HGF5, an organism from the Human Microbiome Project (HMP) Reference Genomes. This, combined with genomic CAZyme analysis, suggests an intestinal, rather than environmental origin for Y412MC10. PMID:23408395

Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park.

PubMed

Mead, David A; Lucas, Susan; Copeland, Alex; Lapidus, Alla; Cheng, Jan-Feng; Bruce, David C; Goodwin, Lynne A; Pitluck, Sam; Chertkov, Olga; Zhang, Xiaojing; Detter, John C; Han, Cliff S; Tapia, Roxanne; Land, Miriam; Hauser, Loren J; Chang, Yun-Juan; Kyrpides, Nikos C; Ivanova, Natalia N; Ovchinnikova, Galina; Woyke, Tanja; Brumm, Catherine; Hochstein, Rebecca; Schoenfeld, Thomas; Brumm, Phillip

2012-07-30

Paenibacillus sp.Y412MC10 was one of a number of organisms isolated from Obsidian Hot Spring, Yellowstone National Park, Montana, USA under permit from the National Park Service. The isolate was initially classified as a Geobacillus sp. Y412MC10 based on its isolation conditions and similarity to other organisms isolated from hot springs at Yellowstone National Park. Comparison of 16 S rRNA sequences within the Bacillales indicated that Geobacillus sp.Y412MC10 clustered with Paenibacillus species, and the organism was most closely related to Paenibacillus lautus. Lucigen Corp. prepared genomic DNA and the genome was sequenced, assembled, and annotated by the DOE Joint Genome Institute. The genome sequence was deposited at the NCBI in October 2009 (NC_013406). The genome of Paenibacillus sp. Y412MC10 consists of one circular chromosome of 7,121,665 bp with an average G+C content of 51.2%. Comparison to other Paenibacillus species shows the organism lacks nitrogen fixation, antibiotic production and social interaction genes reported in other paenibacilli. The Y412MC10 genome shows a high level of synteny and homology to the draft sequence of Paenibacillus sp. HGF5, an organism from the Human Microbiome Project (HMP) Reference Genomes. This, combined with genomic CAZyme analysis, suggests an intestinal, rather than environmental origin for Y412MC10.

Middle Palaeolithic toolstone procurement behaviors at Lusakert Cave 1, Hrazdan valley, Armenia.

PubMed

Frahm, Ellery; Feinberg, Joshua M; Schmidt-Magee, Beverly A; Wilkinson, Keith N; Gasparyan, Boris; Yeritsyan, Benik; Adler, Daniel S

2016-02-01

Strategies employed by Middle Palaeolithic hominins to acquire lithic raw materials often play key roles in assessing their movements through the landscape, relationships with neighboring groups, and cognitive abilities. It has been argued that a dependence on local resources is a widespread characteristic of the Middle Palaeolithic, but how such behaviors were manifested on the landscape remains unclear. Does an abundance of local toolstone reflect frequent encounters with different outcrops while foraging, or was a particular outcrop favored and preferentially quarried? This study examines such behaviors at a finer geospatial scale than is usually possible, allowing us to investigate hominin movements through the landscape surrounding Lusakert Cave 1 in Armenia. Using our newly developed approach to obsidian magnetic characterization, we test a series of hypotheses regarding the locations where hominins procured toolstone from a volcanic complex adjacent to the site. Our goal is to establish whether the cave's occupants procured local obsidian from preferred outcrops or quarries, secondary deposits of obsidian nodules along a river, or a variety of exposures as encountered while moving through the river valley or across the wider volcanic landscape during the course of foraging activities. As we demonstrate here, it is not the case that one particular outcrop or deposit attracted the cave occupants during the studied time intervals. Nor did they acquire obsidian at random across the landscape. Instead, our analyses support the hypothesis that these hominins collected obsidian from outcrops and exposures throughout the adjacent river valley, reflecting the spatial scale of their day-to-day foraging activities. The coincidence of such behaviors within the resource-rich river valley suggests efficient exploitation of a diverse biome during a time interval immediately preceding the Middle to Upper Palaeolithic "transition," the nature and timing of which has yet to

Foliar nitrogen metabolism of adult Douglas-fir trees is affected by soil water availability and varies little among provenances

PubMed Central

Du, Baoguo; Kreuzwieser, Jürgen; Dannenmann, Michael; Junker, Laura Verena; Kleiber, Anita; Hess, Moritz; Jansen, Kirstin; Eiblmeier, Monika; Gessler, Arthur; Kohnle, Ulrich; Ensminger, Ingo; Rennenberg, Heinz

2018-01-01

The coniferous forest tree Douglas-fir (Pseudotsuga menziesii) is native to the pacific North America, and is increasingly planted in temperate regions worldwide. Nitrogen (N) metabolism is of great importance for growth, resistance and resilience of trees. In the present study, foliar N metabolism of adult trees of three coastal and one interior provenance of Douglas-fir grown at two common gardens in southwestern Germany (Wiesloch, W; Schluchsee, S) were characterized in two subsequent years. Both the native North American habitats of the seed sources and the common garden sites in Germany differ in climate conditions. Total and mineral soil N as well as soil water content were higher in S compared to W. We hypothesized that i) provenances differ constitutively in N pool sizes and composition, ii) N pools are affected by environmental conditions, and iii) that effects of environmental factors on N pools differ among interior and coastal provenances. Soil water content strongly affected the concentrations of total N, soluble protein, total amino acids (TAA), arginine and glutamate. Foliar concentrations of total N, soluble protein, structural N and TAA of trees grown at W were much higher than in trees at S. Provenance effects were small but significant for total N and soluble protein content (interior provenance showed lowest concentrations), as well as arginine, asparagine and glutamate. Our data suggest that needle N status of adult Douglas-fir is independent from soil N availability and that low soil water availability induces a re-allocation of N from structural N to metabolic N pools. Small provenance effects on N pools suggest that local adaptation of Douglas-fir is not dominated by N conditions at the native habitats. PMID:29566035

Climate-related Indicators and Data Provenance: Evaluating Coupled Boundary Objects for Science, Innovation, and Decision-Making

NASA Astrophysics Data System (ADS)

Wiggins, A.; Young, A.; Brody, C.; Gerst, M.; Kenney, M. A.; Lamoureux, A.; Rice, A.; Wolfinger, F.

2015-12-01

Boundary object theory focuses on the role of artifacts, such as indicator images, in translation and communication across the boundaries of social groups. We use this framework for understanding how data can communicate across contexts to answer the question: Can coupling climate-related indicators with data provenance support scientific innovation and science translation? To address this question we conducted a study to understand the features and capabilities necessary for indicators and data provenance for scientific uses, using the recently online-released U.S. Global Change Research Program (USGCRP) Indicators and Global Change Information System (GCIS) as linked boundary objects. We conducted semi-structured interviews with professional researchers in which we asked the researchers to explore and describe what they observed that was useful or frustrating for a subset of the USGCRP Indicators, related GCIS content, and other similar indicator and metadata websites. Participants found these sites' navigation and the labeling and description of their assets frustrating and confusing, but were able to clearly articulate the metadata and provenance information they needed to both understand and trust the indicators. In addition to identifying desired features that are likely to be specific to this audience (e.g., references or citations for indicators), scientists wanted clear, easier-to-access provenance information of the type usually recommended for documenting research data. Notably, they felt the information would be best presented in a fashion accessible to a broader audience, as those with more technical expertise should be able to infer additional contextual details given the provenance information that they had identified as key. Such results are useful for the improvement of indicator systems, such as the prototype released by USGCRP. We note in particular that the consistency of responses across the multi-disciplinary sample, which included scholars in

The provenance of low-calcic black shales

NASA Astrophysics Data System (ADS)

Quinby-Hunt, M. S.; Wilde, P.

1991-04-01

The elemental concentration of sedimentary rocks depends on the varying reactivity of each element as it goes from the source through weathering, deposition, diagenesis, lithification, and even low rank metamorphism. However, non-reactive components of detrital particles ideally are characteristic of the original igneous source and thus are useful in provenance studies. To determine the source of detrital granitic and volcanic components of low-calcic (<1% CaCO3) marine black shales, the concentrations of apparently non-reactive (i.e. unaffected by diagenetic, redox and/or low-rank metamorphic processes) trace elements were examined using standard trace element discrimination diagrams developed for igneous rocks. The chemical data was obtained by neutron activation analyses of about 200 stratigraphically well-documented black shale samples from the Cambrian through the Jurassic. A La-Th-Sc ternary diagram distinguishes among contributions from the upper and bulk continental crust and the oceanic crust (Taylor and McLennan 1985). All the low-calcic black shales cluster within the region of the upper crust. Th-Hf-Co ternary diagrams also are commonly used to distinguish among the upper and bulk continental crust and the oceanic crust (Taylor and McLennan 1985). As Co is redox sensitive in black shale environments, it was necessary to substitute an immobile element (i.e. example Rb) in the diagram. With this substitution of black shales all cluster in the region of the upper continental crust. To determine the provenance of the granitic component (Pearce et al. 1984), plots of Ta vs Yb and Rb vs Yb + Ta shows a cluster at the junction of the boundaries separating the volcanic arc granite (VAG), syn-collision granite (syn-COLG), and within-plate granite (WPG) fields. The majority fall within the VAG field. There are no occurrences of ocean ridge granite (ORG). The minimal contribution of basalts to marine black shales is confirmed by the ternary Wood diagram Th-Hf/3-Ta

Seasonal growth in white pine seedlings from different provenances

Treesearch

Frank S., Jr. Santamour

1960-01-01

The Northeastern Forest Experiment Station, in cooperation with other experiment stations in the United States and Canada, began a range-wide provenance test of eastern white pine (Pinus strobus L.) in 1955. Seed was collected from 31 different locations in 17 states and 4 Canadian provinces. In most places collections were made from 10 trees at each location. The seed...

Scanning probe microscopy in mineralogical studies: about origin of the observed roughness of natural silica-rich glasses

NASA Astrophysics Data System (ADS)

Golubev, Ye A.; Isaenko, S. I.

2017-10-01

We have studied different mineralogical objects: natural glasses of impact (tektites, impactites) and volcanic (obsidians) origin, using atomic force microscopy, X-ray microanalysis, infrared and Raman spectroscopy. The spectroscopy showed the difference in the structure and chemical composition of the glasses of different origin. The analysis of the dependence of nanoscale heterogeneity of the glasses, revealed by the atomic force microscopy, on their structural and chemical features was carried out.

Differential susceptibility of white fir provenances to balsam twig aphid

Treesearch

George T. Ferrell

1989-01-01

Susceptibility of Oregon, California, Nevada, Utah, and Arizona provenances of white fir (Abies concolor [Gord. & Glend.] Lindl.) to crown injury caused by balsam twig aphid (Mindarus abietinus Koch.) was assessed in an experimental plantation in the central Sierra Nevada in California. Bud phenology was observed to explore...

Provenance for actionable data products and indicators in marine ecosystem assessments

NASA Astrophysics Data System (ADS)

Beaulieu, S. E.; Maffei, A. R.; Fox, P. A.; West, P.; Di Stefano, M.; Hare, J. A.; Fogarty, M.

2013-12-01

Ecosystem-based management of Large Marine Ecosystems (LMEs) involves the sharing of data and information products among a diverse set of stakeholders - from environmental and fisheries scientists to policy makers, commercial entities, nonprofits, and the public. Often the data products that are shared have resulted from a number of processing steps and may also have involved the combination of a number of data sources. The traceability from an actionable data product or indicator back to its original data source(s) is important not just for trust and understanding of each final data product, but also to compare with similar data products produced by the different stakeholder groups. For a data product to be traceable, its provenance, i.e., lineage or history, must be recorded and preferably machine-readable. We are collaborating on a use case to develop a software framework for the bi-annual Ecosystem Status Report (ESR) for the U.S. Northeast Shelf LME. The ESR presents indicators of ecosystem status including climate forcing, primary and secondary production, anthropogenic factors, and integrated ecosystem measures. Our software framework retrieves data, conducts standard analyses, provides iterative and interactive visualization, and generates final graphics for the ESR. The specific process for each data and information product is updated in a metadata template, including data source, code versioning, attribution, and related contextual information suitable for traceability, repeatability, explanation, verification, and validation. Here we present the use of standard metadata for provenance for data products in the ESR, in particular the W3C provenance (PROV) family of specifications, including the PROV-O ontology which maps the PROV data model to RDF. We are also exploring extensions to PROV-O in development (e.g., PROV-ES for Earth Science Data Systems, D-PROV for workflow structure). To associate data products in the ESR to domain-specific ontologies we are

Ontology development for provenance tracing in National Climate Assessment of the US Global Change Research Program

NASA Astrophysics Data System (ADS)

Fu, Linyun; Ma, Xiaogang; Zheng, Jin; Goldstein, Justin; Duggan, Brian; West, Patrick; Aulenbach, Steve; Tilmes, Curt; Fox, Peter

2014-05-01

This poster will show how we used a case-driven iterative methodology to develop an ontology to represent the content structure and the associated provenance information in a National Climate Assessment (NCA) report of the US Global Change Research Program (USGCRP). We applied the W3C PROV-O ontology to implement a formal representation of provenance. We argue that the use case-driven, iterative development process and the application of a formal provenance ontology help efficiently incorporate domain knowledge from earth and environmental scientists in a well-structured model interoperable in the context of the Web of Data.

Provenance through Time

NASA Astrophysics Data System (ADS)

Chandler, C. L.; Groman, R. C.; Shepherd, A.; Allison, M. D.; Kinkade, D.; Rauch, S.; Wiebe, P. H.; Glover, D. M.

2014-12-01

The ability to reproduce scientific results is a cornerstone of the scientific method, and access to the data upon which the results are based is essential to reproducibility. Access to the data alone is not enough though, and research communities have recognized the importance of metadata (data documentation) to enable discovery and data access, and facilitate interpretation and accurate reuse. The Biological and Chemical Oceanography Data Management Office (BCO-DMO) was first funded in late 2006 by the National Science Foundation (NSF) Division of Ocean Sciences (OCE) Biology and Chemistry Sections to help ensure that data generated during NSF OCE funded research would be preserved and available for future use. The BCO-DMO was formed by combining the formerly independent data management offices of two marine research programs: the United States Joint Global Ocean Flux Study (US JGOFS) and the US GLOBal Ocean ECosystems Dynamics (US GLOBEC) program. Since the US JGOFS and US GLOBEC programs were both active (1990s) there have been significant changes in all aspects of the research data life cycle, and the staff at BCO-DMO has modified the way in which we manage data contributed to the office. The supporting documentation that describes each dataset was originally displayed as a human-readable text file retrievable via a Web browser. BCO-DMO still offers that form because our primary audience is marine researchers using Web browser clients; however we are seeing an increased demand to support machine client access. Metadata records from the BCO-DMO data system are now extracted and published out in a variety of formats. The system supports ISO 19115, FGDC, GCMD DIF, schema.org Dataset extension, formal publication with a DOI, and RDF with semantic markup including PROV-O, FOAF and more. In the 1990s, data documentation helped researchers locate data of interest and understand the provenance sufficiently to determine fitness for purpose. Today, providing data

BioQ: tracing experimental origins in public genomic databases using a novel data provenance model.

PubMed

Saccone, Scott F; Quan, Jiaxi; Jones, Peter L

2012-04-15

Public genomic databases, which are often used to guide genetic studies of human disease, are now being applied to genomic medicine through in silico integrative genomics. These databases, however, often lack tools for systematically determining the experimental origins of the data. We introduce a new data provenance model that we have implemented in a public web application, BioQ, for assessing the reliability of the data by systematically tracing its experimental origins to the original subjects and biologics. BioQ allows investigators to both visualize data provenance as well as explore individual elements of experimental process flow using precise tools for detailed data exploration and documentation. It includes a number of human genetic variation databases such as the HapMap and 1000 Genomes projects. BioQ is freely available to the public at http://bioq.saclab.net.

A provenance study of iron archaeological artefacts by Inductively Coupled Plasma-Mass Spectrometry multi-elemental analysis

NASA Astrophysics Data System (ADS)

Desaulty, Anne-Marie; Mariet, Clarisse; Dillmann, Philippe; Joron, Jean Louis; Fluzin, Philippe

2008-11-01

Raw materials and wastes (i.e. ore, slag and laitier) from ironmaking archaeological sites have been analyzed in order to understand the behavior of the trace elements in the ancient ironmaking processes and to find the significant-most elements to characterize an iron making region. The ICP-MS (Inductively Coupled Plasma Mass Spectrometry) appears to be an excellent technique for this type of studies. The comparison between the ICP-MS results obtained with the Standard Addition method and the INAA (Instrumental Neutron Activation Analyses) results proved that Sc, Co, (Ni), Rb, Cs, Ba, La, Ce, Sm, Eu, Yb, Hf, Th, U contents in the ores, slag and laitiers, and Co and Ni contents in the cast iron can be successfully determined by ICP-MS after wet acid digestion (low detection limits, good sensitivity and precision). By using significant trace element pairs (Yb/Ce, Ce/Th, La/Sc, U/Th, Nb/Y) present in the ores, laitiers and slag, it is possible to discriminate different French ironmaking regions as the Pays de Bray, Lorraine and Pays d'Ouche. These results open the way to further studies on the provenance of iron objects. The comparison between the ICP-MS results obtained with the Standard Calibration Curves method and the INAA results shows that matrices rich in iron, affect the ICP-MS analyses by suppressing the analytes signal. Further studies are necessary to improve understanding matrix effects.

Geochemistry of loess-paleosol sediments of Kashmir Valley, India: Provenance and weathering

NASA Astrophysics Data System (ADS)

Ahmad, Ishtiaq; Chandra, Rakesh

2013-04-01

Middle to Late Pleistocene loess-paleosol sediments of Kashmir Valley, India, were analyzed for major, trace and REE elements in order to determine their chemical composition, provenance and intensity of palaeo-weathering of the source rocks. These sediments are generally enriched with Fe2O3, MgO, MnO, TiO2, Y, Ni, Cu, Zn, Th, U, Sc, V and Co while contents of SiO2, K2O, Na2O, P2O5, Sr, Nb and Hf are lower than the UCC. Chondrite normalized REE patterns are characterized by moderate enrichment of LREEs, relatively flat HREE pattern (GdCN/YbCN = 1.93-2.31) and lack of prominent negative Eu anomaly (Eu/Eu* = 0.73-1.01, average = 0.81). PAAS normalized REE are characterized by slightly higher LREE, depleted HREE and positive Eu anomaly. Various provenance discrimination diagrams reveal that the Kashmir Loess-Paleosol sediments are derived from the mixed source rocks suggesting large provenance with variable geological settings, which apparently have undergone weak to moderate recycling processes. Weathering indices such as CIA, CIW and PIA values (71.87, 83.83 and 80.57 respectively) and A-CN-K diagram imply weak to moderate weathering of the source material.

Photosynthetic capacity and leaf nitrogen decline along a controlled climate gradient in provenances of two widely distributed Eucalyptus species.

PubMed

Crous, Kristine Y; Drake, John E; Aspinwall, Michael J; Sharwood, Robert E; Tjoelker, Mark G; Ghannoum, Oula

2018-05-27

Climate is an important factor limiting tree distributions and adaptation to different thermal environments may influence how tree populations respond to climate warming. Given the current rate of warming, it has been hypothesized that tree populations in warmer, more thermally stable climates may have limited capacity to respond physiologically to warming compared to populations from cooler, more seasonal climates. We determined in a controlled environment how several provenances of widely distributed Eucalyptus tereticornis and E. grandis adjusted their photosynthetic capacity to +3.5°C warming along their native distribution range (~16-38°S) and whether climate of seed origin of the provenances influenced their response to different growth temperatures. We also tested how temperature optima (T opt ) of photosynthesis and J max responded to higher growth temperatures. Our results showed increased photosynthesis rates at a standardized temperature with warming in temperate provenances, while rates in tropical provenances were reduced by about 40% compared to their temperate counterparts. Temperature optima of photosynthesis increased as provenances were exposed to warmer growth temperatures. Both species had ~30% reduced photosynthetic capacity in tropical and subtropical provenances related to reduced leaf nitrogen and leaf Rubisco content compared to temperate provenances. Tropical provenances operated closer to their thermal optimum and came within 3% of the T opt of J max during the daily temperature maxima. Hence, further warming may negatively affect C uptake and tree growth in warmer climates, whereas eucalypts in cooler climates may benefit from moderate warming. © 2018 John Wiley & Sons Ltd.

Capturing, Harmonizing and Delivering Data and Quality Provenance

NASA Technical Reports Server (NTRS)

Leptoukh, Gregory; Lynnes, Christopher

2011-01-01

Satellite remote sensing data have proven to be vital for various scientific and applications needs. However, the usability of these data depends not only on the data values but also on the ability of data users to assess and understand the quality of these data for various applications and for comparison or inter-usage of data from different sensors and models. In this paper, we describe some aspects of capturing, harmonizing and delivering this information to users in the framework of distributed web-based data tools.

Provenance discrimination of sediments in the Zhejiang-Fujian mud belt, East China Sea: Implications for the development of the mud depocenter

NASA Astrophysics Data System (ADS)

Liu, Xiting; Li, Anchun; Dong, Jiang; Lu, Jian; Huang, Jie; Wan, Shiming

2018-01-01

In the past decade, the 800 km elongated mud belt off Zhejiang-Fujian coast, East China Sea (ECS), has been extensively studied for understanding the source to sink processes on the East Asian continental margin in the context of the Asian monsoon. However, to better understand the sediment source and dispersal pattern, the existing mineralogical and geochemical data of adjacent river systems, including the Changjiang River (CJR) and local rivers in Zhejiang, Fujian and Taiwan, need to be systematically reviewed. Therefore, various indicators from published literatures for the provenance discrimination in the mud belt have been summarised in this article. The results show that high diversity of clay mineral assemblages in fluvial sediments being supplied into the mud belt, e.g., dominant illite and chlorite in the CJR, absence of smectite in Taiwan rivers, similar amounts of the four clay mineral species in Zhejiang rivers, and dominant kaolinite in Fujian rivers. On heavy mineralogy, the CJR is dominated by dolomite, hornblende, and flaky minerals; and among of them, dolomite is distinctive for the CJR. For geochemical approaches, elemental compositions, combined with strontium and neodymium isotopes, reflect strong provenance control. However, geochemical and mineralogical compositions are found to vary with grain size, and thus extra caution should be taken when using these parameters as provenance indicator to discriminate the marine sediments with variety of grain-size fractions. In addition, pyrrhotite, occurred in fluvial sediments from western Taiwan, has not been found in sediments derived from mainland China, indicating that magnetic parameters could be used to discriminate sediment provenance. The mud belt formed during sea-level highstand, when modern current system in the ECS has been established, resulting in sediments derived from the CJR have been transported southward since 8 ka. In addition, sediment provenances have not been constant since

Microbial composition analyses by 16S rRNA sequencing: A proof of concept approach to provenance determination of archaeological ochre.

PubMed

Lenehan, Claire E; Tobe, Shanan S; Smith, Renee J; Popelka-Filcoff, Rachel S

2017-01-01

Many archaeological science studies use the concept of "provenance", where the origins of cultural material can be determined through physical or chemical properties that relate back to the origins of the material. Recent studies using DNA profiling of bacteria have been used for the forensic determination of soils, towards determination of geographic origin. This manuscript presents a novel approach to the provenance of archaeological minerals and related materials through the use of 16S rRNA sequencing analysis of microbial DNA. Through the microbial DNA characterization from ochre and multivariate statistics, we have demonstrated the clear discrimination between four distinct Australian cultural ochre sites.

[Bronchial reactivity and mucosal bioamines as criteria for acute bronchitis becoming chronic].

PubMed

Artem'eva, E G; Latfullin, I A

2002-01-01

To study bronchial reactivity and sensitivity with consideration of histamine, serotonin and catecholamines concentration in bronchial mucosa in patients with acute bronchitis (AB) as possible criteria of its becoming chronic. Before the treatment 116 patients with verified AB were examined using inhalation provocative tests (IPT) with histamine, serotonin and obsidian in increasing doses. Also, external respiration function was studied. IPT were repeated after the course of treatment. 87 of 116 AB patients exhibited high bronchial sensitivity and reactivity to inhalations of histamine, serotonin, obsidian. In parallel, there was a rise in the levels of histamine and serotonin and a fall in the level of catecholamines in bronchial mucosa (alveolar macrophages, lymphocytes, neutrophils, mast and APUD-cells). Changes in monoamines concentration in bronchial mucosa were relevant to activity of bronchial inflammation and the presence of obstructive syndrome. Persistent bronchial hyperreactivity to inhalations of histamine and obsidian along with high histamine levels and low level of catecholamines in alveolar macrophages, lymphocytes and mucus is a criterion of bronchitis transformation to chronic one.

Provenance of the lower Miocene of the Gulf of Mexico from detrital zircon double dating

NASA Astrophysics Data System (ADS)

xu, J.

2013-12-01

The lower Miocene interval of the Gulf of Mexico (GOM) has recently gained increasing attention from oil and gas industry due to its hydrocarbon potential below the salt canopy. However, it has been less well studied than both the underlying Oligocene and overlying middle Miocene strata. The lower Miocene worldwide is a transitional period of tectonic, climatic, and oceanographic change. In particular, it is a period of major tectonic reorganization in the western interior of North America (Rocky Mountains), involving a shift from the Oligocene thermal phase, with abundant volcanic activity recorded in the thick Frio/Vicksburg succession of the GOM, to the Miocene Basin-Range extensional phase. Climatic conditions also changed from a relatively arid Oligocene to wetter Miocene, resulting in increased sediment yields from exhumed tectonic structures. Previous provenance studies used proportions of quartz, feldspar and lithic fragments and consideration of likely river courses through known paleogeomorphological elements. Only limited detrital zircon (DZ) U-Pb studies on Paleocene strata have been undertaken and there has been no previous U-Pb and (U-Th)/He double dating in the GOM. In this study we apply the latest analytical approaches, such as DZ U-Pb dating to gain robust source terranes ages and more fully elucidate the complex sediment provenance and dispersal history of GOM. We also employ DZ (U-Th)/He (ZHe) dating, combined with DZ U-Pb, to not only define sedimentary provenance but also the exhumation histories of detrital source regions. Samples of lower Miocene outcrop exposures in Texas and Louisiana have been collected to discriminate the varied tectonic and drainage system changes across the basin in lateral. In addition, samples from the Eocene, Oligocene and middle Miocene have been obtained to reveal vertical shift of source terranes contributions. Our initial age data show detrital zircons of lower Miocene sediments come from a wide range of source

New Insights into the Provenance of the Southern Junggar Basin in the Jurassic from Heavy Mineral Analysis and Sedimentary Characteristics

NASA Astrophysics Data System (ADS)

Zhou, T. Q.; Wu, C.; Zhu, W.

2017-12-01

Being a vital component of foreland basin of Central-western China, Southern Junggar Basin has observed solid evidences of oil and gas in recent years without a considerable advancement. The key reason behind this is the lack of systematic study on sedimentary provenance analysis of the Southern Junggar basin. Three parts of the Southern Junggar basin, including the western segment (Sikeshu Sag), the central segment (Qigu Fault-Fold Belt) and the eastern segment (Fukang Fault Zone), possess varied provenance systems, giving rise to difficulties for oil-gas exploration. In this study, 3468 heavy minerals data as well as the sedimentary environment analysis of 10 profiles and 7 boreholes were used to investigate the provenances of the deposits in the southern Junggar basin . Based on this research, it reveals that: Sikeshu sag initially shaped the foreland basin prototype in the Triassic and its provenance area of the sediments from the Sikeshu sag has primarily been situated in zhongguai uplift-chepaizi uplift depositional systems located in the northwestern margin of the Junggar Basin. From the early Jurassic, the key sources were likely to be late Carboniferous to early Permain post-collisional volcanic rocks from the North Tian Shan block to Centrao Tian Shan. In the Xishanyao formation, Abundant lithic metamorphic, epidote and garnet that suggests the source rocks were possibly late Carboniferous subduction-related arc volcanic rocks of the Central Tian Shan. In the Toutunhe formation, Bogda Mountains began uplifting and gradually becoming the major provenance. Moreover, the sedimentary boundaries of Junggar basin have also shifted towards the North Tian Shan again. In the late Jurassic, the conglomerates of the Kalazha formation directly overlie the fine-grained red beds of Qigu formation, which throw light on the rapid tectonic uplift of the North Tian Shan. In the eastern segment, meandering river delta and shore-lacustrine environments were fully developed

Provenance history of detrital diamond deposits, West Coast of Namaqualand, South Africa

NASA Astrophysics Data System (ADS)

Phillips, David; Harris, Jeffrey W.; de Wit, Michiel C. J.; Matchan, Erin L.

2018-05-01

The West Coast of Namaqualand in South Africa hosts extensive detrital diamond deposits, but considerable debate exists as to the provenance of these diamonds. Some researchers have suggested derivation of the diamonds from Cretaceous-Jurassic kimberlites (also termed Group I kimberlites) and orangeites (also termed Group II kimberlites) located on the Kaapvaal Craton. However, others favour erosion of diamonds from the ca.300 Ma Dwyka Group sediments, with older, pre-Karoo kimberlites being the original source(s). Previous work has demonstrated that 40Ar/39Ar analyses of clinopyroxene inclusions, extracted from diamonds, yield ages approaching the time(s) of source kimberlite emplacement, which can be used to constrain the provenance of placer diamond deposits. In the current study, 40Ar/39Ar analyses were conducted on clinopyroxene inclusions from two similar batches of Namaqualand detrital diamonds, yielding (maximum) ages ranging from 117.5 ± 43.6 Ma to 3684 ± 191 Ma (2σ) and 120.6 ± 15.4 Ma to 688.8 ± 4.9 Ma (2σ), respectively. The vast majority of inclusions (88%) produced ages younger than 500 Ma, indicating that most Namaqualand diamonds originated from Cretaceous-Jurassic kimberlites/orangeites, with few, if any, derived from the Dwyka tillites. The provenance of the Namaqualand diamonds from ca.115-200 Ma orangeites is consistent with Late Cretaceous paleo-drainage reconstructions, as these localities could have been sampled by the `paleo-Karoo' River and transported to the West Coast via an outlet close to the current Olifants River mouth. At ca.90 Ma, this drainage system appears to have been captured by the `paleo-Kalahari' River, a precursor to the modern Orange River system. This latter drainage is considered to have transported diamonds eroded from both ca.80-90 Ma kimberlites and ca.115-200 Ma orangeites to the West Coast, which were subsequently reworked along the Namibian coast, forming additional placer deposits.

Titian: Data Provenance Support in Spark

PubMed Central

Interlandi, Matteo; Shah, Kshitij; Tetali, Sai Deep; Gulzar, Muhammad Ali; Yoo, Seunghyun; Kim, Miryung; Millstein, Todd; Condie, Tyson

2015-01-01

Debugging data processing logic in Data-Intensive Scalable Computing (DISC) systems is a difficult and time consuming effort. Today’s DISC systems offer very little tooling for debugging programs, and as a result programmers spend countless hours collecting evidence (e.g., from log files) and performing trial and error debugging. To aid this effort, we built Titian, a library that enables data provenance—tracking data through transformations—in Apache Spark. Data scientists using the Titian Spark extension will be able to quickly identify the input data at the root cause of a potential bug or outlier result. Titian is built directly into the Spark platform and offers data provenance support at interactive speeds—orders-of-magnitude faster than alternative solutions—while minimally impacting Spark job performance; observed overheads for capturing data lineage rarely exceed 30% above the baseline job execution time. PMID:26726305

BioQ: tracing experimental origins in public genomic databases using a novel data provenance model

PubMed Central

Saccone, Scott F.; Quan, Jiaxi; Jones, Peter L.

2012-01-01

Motivation: Public genomic databases, which are often used to guide genetic studies of human disease, are now being applied to genomic medicine through in silico integrative genomics. These databases, however, often lack tools for systematically determining the experimental origins of the data. Results: We introduce a new data provenance model that we have implemented in a public web application, BioQ, for assessing the reliability of the data by systematically tracing its experimental origins to the original subjects and biologics. BioQ allows investigators to both visualize data provenance as well as explore individual elements of experimental process flow using precise tools for detailed data exploration and documentation. It includes a number of human genetic variation databases such as the HapMap and 1000 Genomes projects. Availability and implementation: BioQ is freely available to the public at http://bioq.saclab.net Contact: ssaccone@wustl.edu Supplementary information: Supplementary data are available at Bioinformatics online. PMID:22426342

Hydration rind dates rhyolite flows

USGS Publications Warehouse

Friedman, I.

1968-01-01

Hydration of obsidian has been used to date rhyolite flows, containing obsidian or porphyritic glass, at Glass Mountain (Medicine Lake Highlands) and Mono Lake, California. The method is simple and rapid and can be used to date flows that erupted between 200 and approximately 200,000 years ago.

Hydration rind dates rhyolite flows.

PubMed

Friedman, I

1968-02-23

Hydration of obsidian has been used to date rhyolite flows, containing obsidian or porphyritic glass, at Glass Mountain (Medicine Lake Highlands) and Mono Lake, California. The method is simple and rapid and can be used to date flows that erupted between 200 and approximately 200,000 years ago.

Evaluation of simple geochemical indicators of aeolian sand provenance: Late Quaternary dune fields of North America revisited

USGS Publications Warehouse

Muhs, Daniel

2017-01-01

Dune fields of Quaternary age occupy large areas of the world's arid and semiarid regions. Despite this, there has been surprisingly little work done on understanding dune sediment provenance, in part because many techniques are time-consuming, prone to operator error, experimental, highly specialized, expensive, or require sophisticated instrumentation. Provenance of dune sand using K/Rb and K/Ba values in K-feldspar in aeolian sands of the arid and semiarid regions of North America is tested here. Results indicate that K/Rb and K/Ba can distinguish different river sands that are sediment sources for dunes and dune fields themselves have distinctive K/Rb and K/Ba compositions. Over the Basin and Range and Great Plains regions of North America, the hypothesized sediment sources of dune fields are reviewed and assessed using K/Rb and K/Ba values in dune sands and in hypothesized source sediments. In some cases, the origins of dunes assessed in this manner are consistent with previous studies and in others, dune fields are found to have a more complex origin than previously thought. Use of K/Rb and K/Ba for provenance studies is a robust method that is inexpensive, rapid, and highly reproducible. It exploits one of the most common minerals found in dune sand, K-feldspar. The method avoids the problem of using simple concentrations of key elements that may be subject to interpretative bias due to changes in mineralogical maturity of Quaternary dune fields that occur over time.

Automated metadata, provenance cataloging and navigable interfaces: ensuring the usefulness of extreme-scale data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schissel, David; Greenwald, Martin

The MPO (Metadata, Provenance, Ontology) Project successfully addressed the goal of improving the usefulness and traceability of scientific data by building a system that could capture and display all steps in the process of creating, analyzing and disseminating that data. Throughout history, scientists have generated handwritten logbooks to keep track of data, their hypotheses, assumptions, experimental setup, and computational processes as well as reflections on observations and issues encountered. Over the last several decades, with the growth of personal computers, handheld devices, and the World Wide Web, the handwritten logbook has begun to be replaced by electronic logbooks. This transitionmore » has brought increased capability such as supporting multi-media, hypertext, and fast searching. However, content creation and metadata (a set of data that describes and gives information about other data) capturing has for the most part remained a manual activity just as it was with handwritten logbooks. This has led to a fragmentation of data, processing, and annotation that has only accelerated as scientific workflows continue to increase in complexity. From a scientific perspective, it is very important to be able to understand the lineage of any piece of data: who, what, when, how, and why. This is typically referred to as data provenance. The fragmentation discussed previously often means that data provenance is lost. As scientific workflows move to powerful computers and become more complex, the ability to track all of the steps involved in creating a piece of data become even more difficult. It was the goal of the MPO (Metadata, Provenance, Ontology) Project to create a system (the MPO System) that allows for automatic provenance and metadata capturing in such a way to allow easy searching and browsing. This goal needed to be accomplished in a general way so that it may be used across a broad range of scientific domains, yet allow the addition of vocabulary

Provenance of fine-grained sediments in the inner shelf of the Korea Strait (South Sea), Korea

NASA Astrophysics Data System (ADS)

Um, In kwon; Choi, Man Sik; Bae, Sung Ho; Song, Yunho; Kong, Gee Soo

2017-12-01

Major metals (Al, Fe, Mg, and Ti), trace metals (Li, Cs, Sc, and Rb), and rare earth elements (REEs) in the fine-grained sediments (< 15 μm) of the central South Sea mud (CSSM) were analyzed to determine the sediment provenance. The spatial distribution of the analyzed elements showed a clear separation between the western (W-CSSM) and eastern (E-CSSM) regions of the CSSM. Concentrations of Fe, Ti, Mg, Sc, and REEs were higher in the WCSSM, whereas concentrations of Al, Cs, Li, and Rb were higher in the E-CSSM. Unlike the ratios of trace metals ((Cs+Sc)/Li and Rb/Li), REEs could not be used to track the provenance of fine-grained sediments because of a grain size effect. The mixing relationships of the provenance indicators showed that the fine-grained sediments of the CSSM comprise a mixture of the sediments discharged from the Seomjin River (SRS) and sediments eroded and transported from the Heuksan mud belt (HMBS) area by the Korean Coastal Current. Sediments originating from the HMB were deposited mostly in the W-CSSM, whereas those from the Seomjin River were deposited mostly in the E-CSSM. This study indicated that sediments from Chinese rivers as well as the Geum River are important even in the inner shelf of the South Sea of Korea.

Provenance of Fine-grained Sediments in the Inner Shelf of the Korea Strait (South Sea), Korea

NASA Astrophysics Data System (ADS)

Um, In kwon; Choi, Man Sik; Bae, Sung Ho; Song, Yunho; Kong, Gee Soo

2018-03-01

Major metals (Al, Fe, Mg, and Ti), trace metals (Li, Cs, Sc, and Rb), and rare earth elements (REEs) in the fine-grained sediments (< 15 μm) of the central South Sea mud (CSSM) were analyzed to determine the sediment provenance. The spatial distribution of the analyzed elements showed a clear separation between the western (W-CSSM) and eastern (E-CSSM) regions of the CSSM. Concentrations of Fe, Ti, Mg, Sc, and REEs were higher in the WCSSM, whereas concentrations of Al, Cs, Li, and Rb were higher in the E-CSSM. Unlike the ratios of trace metals ((Cs+Sc)/Li and Rb/Li), REEs could not be used to track the provenance of fine-grained sediments because of a grain size effect. The mixing relationships of the provenance indicators showed that the fine-grained sediments of the CSSM comprise a mixture of the sediments discharged from the Seomjin River (SRS) and sediments eroded and transported from the Heuksan mud belt (HMBS) area by the Korean Coastal Current. Sediments originating from the HMB were deposited mostly in the W-CSSM, whereas those from the Seomjin River were deposited mostly in the E-CSSM. This study indicated that sediments from Chinese rivers as well as the Geum River are important even in the inner shelf of the South Sea of Korea.

High Throughput Petrochronology and Sedimentary Provenance Analysis by Automated Phase Mapping and LAICPMS

NASA Astrophysics Data System (ADS)

Vermeesch, Pieter; Rittner, Martin; Petrou, Ethan; Omma, Jenny; Mattinson, Chris; Garzanti, Eduardo

2017-11-01

The first step in most geochronological studies is to extract dateable minerals from the host rock, which is time consuming, removes textural context, and increases the chance for sample cross contamination. We here present a new method to rapidly perform in situ analyses by coupling a fast scanning electron microscope (SEM) with Energy Dispersive X-ray Spectrometer (EDS) to a Laser Ablation Inductively Coupled Plasma Mass Spectrometer (LAICPMS) instrument. Given a polished hand specimen, a petrographic thin section, or a grain mount, Automated Phase Mapping (APM) by SEM/EDS produces chemical and mineralogical maps from which the X-Y coordinates of the datable minerals are extracted. These coordinates are subsequently passed on to the laser ablation system for isotopic analysis. We apply the APM + LAICPMS method to three igneous, metamorphic, and sedimentary case studies. In the first case study, a polished slab of granite from Guernsey was scanned for zircon, producing a 609 ± 8 Ma weighted mean age. The second case study investigates a paragneiss from an ultra high pressure terrane in the north Qaidam terrane (Qinghai, China). One hundred seven small (25 µm) metamorphic zircons were analyzed by LAICPMS to confirm a 419 ± 4 Ma age of peak metamorphism. The third and final case study uses APM + LAICPMS to generate a large provenance data set and trace the provenance of 25 modern sediments from Angola, documenting longshore drift of Orange River sediments over a distance of 1,500 km. These examples demonstrate that APM + LAICPMS is an efficient and cost effective way to improve the quantity and quality of geochronological data.

Tracking and Establishing Provenance of Earth Science Datasets: A NASA-based Example

NASA Technical Reports Server (NTRS)

Ramapriyan, Hampapuram K.; Goldstein, Justin C.; Hua, Hook; Wolfe, Robert E.

2016-01-01

Information quality is of paramount importance to science. Accurate, scientifically vetted and statistically meaningful and, ideally, reproducible information engenders scientific trust and research opportunities. Therefore, so-called Highly Influential Scientific Assessments (HISA) such as the U.S. Third National Climate Assessment undergo a very rigorous process to ensure transparency and credibility. As an activity to support the transparency of such reports, the U.S. Global Change Research Program has developed the Global Change Information System (GCIS). Specifically related to the transparency of NCA3, a recent activity was carried out to trace the provenance as completely as possible for all figures in the NCA3 report that predominantly used NASA data. This paper discusses lessons learned from this activity that trace the provenance of NASA figures in a major HISA-class pdf report.

PI-RADS version 2 for prediction of pathological downgrading after radical prostatectomy: a preliminary study in patients with biopsy-proven Gleason Score 7 (3+4) prostate cancer.

PubMed

Woo, Sungmin; Kim, Sang Youn; Lee, Joongyub; Kim, Seung Hyup; Cho, Jeong Yeon

2016-10-01

To evaluate PI-RADSv2 for predicting pathological downgrading after radical prostatectomy (RP) in patients with biopsy-proven Gleason score (GS) 7(3+4) PC. A total of 105 patients with biopsy-proven GS 7(3+4) PC who underwent multiparametric prostate MRI followed by RP were included. Two radiologists assigned PI-RADSv2 scores for each patient. Preoperative clinicopathological variables and PI-RADSv2 scores were compared between patients with and without downgrading after RP using the Wilcoxon rank sum test or Fisher's exact test. Logistic regression analyses with Firth's bias correction were performed to assess their association with downgrading. Pathological downgrading was identified in ten (9.5 %) patients. Prostate-specific antigen (PSA), PSA density, percentage of cores with GS 7(3+4), and greatest percentage of core length (GPCL) with GS 7(3+4) were significantly lower in patients with downgrading (p = 0.002-0.037). There was no significant difference in age and clinical stage (p = 0.537-0.755). PI-RADSv2 scores were significantly lower in patients with downgrading (3.8 versus 4.4, p = 0.012). At univariate logistic regression analysis, PSA, PSA density, and PI-RADSv2 scores were significant predictors of downgrading (p = 0.003-0.022). Multivariate analysis revealed only PSA density and PI-RADSv2 scores as independent predictors of downgrading (p = 0.014-0.042). The PI-RADSv2 scoring system was an independent predictor of pathological downgrading after RP in patients with biopsy-proven GS 7(3+4) PC. • PI-RADSv2 was an independent predictor of downgrading in biopsy-proven GS 7(3+4) PC • PSA density was also an independent predictor of downgrading • MRI may assist in identifying AS candidates in biopsy-proven GS 7(3+4) PC patients.

Provenance establishment of coffee using solution ICP-MS and ICP-AES.

PubMed

Valentin, Jenna L; Watling, R John

2013-11-01

Statistical interpretation of the concentrations of 59 elements, determined using solution based inductively coupled plasma mass spectrometry (ICP-MS) and inductively coupled plasma emission spectroscopy (ICP-AES), was used to establish the provenance of coffee samples from 15 countries across five continents. Data confirmed that the harvest year, degree of ripeness and whether the coffees were green or roasted had little effect on the elemental composition of the coffees. The application of linear discriminant analysis and principal component analysis of the elemental concentrations permitted up to 96.9% correct classification of the coffee samples according to their continent of origin. When samples from each continent were considered separately, up to 100% correct classification of coffee samples into their countries, and plantations of origin was achieved. This research demonstrates the potential of using elemental composition, in combination with statistical classification methods, for accurate provenance establishment of coffee. Copyright © 2013 Elsevier Ltd. All rights reserved.

Detrital shocked minerals: microstructural provenance indicators of impact craters

NASA Astrophysics Data System (ADS)

Cavosie, A. J.

2014-12-01

The study of detrital shocked minerals (DSMs) merges planetary science, sedimentology, mineralogy/crystallography, accessory mineral geochemistry, and geochronology, with the goal of identifying and determining provenance of shock metamorphosed sand grains. Diagnostic high-pressure impact-generated microstructures (planar fractures, planar deformation features) are readily identified on external grain surfaces using standard SEM imaging methods (BSE), and when found, unambiguously confirm an impact origin for a given sand grain. DSMs, including quartz, zircon, monazite, and apatite, have thus far been documented at the Vredefort Dome [1,2,3], Sudbury [4], Rock Elm [5], and Santa Fe [6,7] impact structures. DSMs have been identified in alluvium, colluvium, beach sand, and glacial deposits. Two main processes are recognized that imply the global siliciclastic record contains DSMs: they survive extreme distal transport, and they survive 'deep time' lithification. Distal transport: In South Africa, shocked minerals are preserved in alluvium from the Vaal River >750 km downstream from the Vredefort impact; SHRIMP U-Pb geochronology has confirmed the origin of detrital shocked zircon and monazite from shocked Vredefort bedrock [2]. Vredefort-derived shocked zircons have also been found at the mouth of the Orange River on the Atlantic coast, having travelled ~2000 km downriver from Vredefort [8]. Deep time preservation: Vredefort-derived shocked zircon and quartz has been documented in glacial diamictite from the 300 Myr-old Dwyka Group in South Africa. Shocked minerals were thus entrained and transported in Paleozoic ice sheets that passed over Vredefort [9]. An impact crater can thus be viewed as a unique 'point source', in some cases for billions of years [2,4]; DSMs thus have applications in studying eroded impact craters, sedimentary provenance, landscape evolution, and long-term sediment transport processes throughout the geologic record. This work was supported by

New markers to identify the provenance of lapis lazuli: trace elements in pyrite by means of micro-PIXE

NASA Astrophysics Data System (ADS)

Re, A.; Angelici, D.; Lo Giudice, A.; Maupas, E.; Giuntini, L.; Calusi, S.; Gelli, N.; Massi, M.; Borghi, A.; Gallo, L. M.; Pratesi, G.; Mandò, P. A.

2013-04-01

Lapis lazuli has been used for glyptics and carving since the fifth millennium BC to produce jewels, amulets, seals, inlays, etc; the identification of the origin of the stone used for carving artworks may be valuable for reconstructing old trade routes. Since ancient lapis lazuli art objects are precious, only non-destructive techniques can be used to identify their provenance, and ion beam analysis (IBA) techniques allow us to characterise this stone in a fully non-invasive way. In addition, by using an ion microprobe, we have been able to focus the analysis on single crystals, as their typical dimensions may range from a few microns to hundreds of microns. Provenance markers, identified in previous IBA studies and already presented elsewhere, were based on the presence/absence of mineral phases, on the presence/quantity of trace elements inside a phase and on characteristic features of the luminescence spectra. In this work, a systematic study on pyrite crystals, a common accessory mineral in lapis lazuli, was carried out, following a multi-technique approach: optical microscopy and SEM-EDX to select crystals for successive trace element micro-PIXE measurements at two Italian facilities, the INFN Laboratori Nazionali di Legnaro and the INFN LABEC laboratory in Firenze. The results of this work allowed us to obtain new markers for lapis lazuli provenance identification.

Integrating prediction, provenance, and optimization into high energy workflows

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schram, M.; Bansal, V.; Friese, R. D.

We propose a novel approach for efficient execution of workflows on distributed resources. The key components of this framework include: performance modeling to quantitatively predict workflow component behavior; optimization-based scheduling such as choosing an optimal subset of resources to meet demand and assignment of tasks to resources; distributed I/O optimizations such as prefetching; and provenance methods for collecting performance data. In preliminary results, these techniques improve throughput on a small Belle II workflow by 20%.

The deuterium content of water in some volcanic glasses

USGS Publications Warehouse

Friedman, I.; Smith, R.L.

1958-01-01

The deuterium-hydrogen composition (relative to Lake Michigan water = 0.0) of water extractsd from coexisting perlite and obsidian from eleven different localities was determined. The water content of the obsidians is generally from 0.09 to 0.29 per cent by weight, though two samples from near Olancha, California, contain about 0.92 per cent. The relative deuterium concentration is from -4.6 to -12.3 per cent. The coexisting perlite contains from 2.0 to 3.8 per cent of water with a relative deuterium concentration of -3.1 to -16.6 per cent. The deuterium concentration in the perlites is not related to that in the enclosed obsidian. The deuterium concentration in the perlite water is related to the deuterium concentration of the modern meteoric water and the perlite water contains approximately 4 per cent less deuterium than does the groundwater of the area in which the perlites occur. The above relations hold true for perlites from northern New Mexico, east slope of the Sierra Nevada. California Coast Range, Yellowstone Park, Wyoming, and New Zealand. As the water in the obsidian is unrelated to meteoric water, but the enclosing perlite water is related, we believe that this is evidence for the secondary hydration of obsidian to form high water content perlitic glass. ?? 1958.

A proven knowledge-based approach to prioritizing process information

NASA Technical Reports Server (NTRS)

Corsberg, Daniel R.

1991-01-01

Many space-related processes are highly complex systems subject to sudden, major transients. In any complex process control system, a critical aspect is rapid analysis of the changing process information. During a disturbance, this task can overwhelm humans as well as computers. Humans deal with this by applying heuristics in determining significant information. A simple, knowledge-based approach to prioritizing information is described. The approach models those heuristics that humans would use in similar circumstances. The approach described has received two patents and was implemented in the Alarm Filtering System (AFS) at the Idaho National Engineering Laboratory (INEL). AFS was first developed for application in a nuclear reactor control room. It has since been used in chemical processing applications, where it has had a significant impact on control room environments. The approach uses knowledge-based heuristics to analyze data from process instrumentation and respond to that data according to knowledge encapsulated in objects and rules. While AFS cannot perform the complete diagnosis and control task, it has proven to be extremely effective at filtering and prioritizing information. AFS was used for over two years as a first level of analysis for human diagnosticians. Given the approach's proven track record in a wide variety of practical applications, it should be useful in both ground- and space-based systems.

Tracing the depositional history of Kalimantan diamonds by zircon provenance and diamond morphology studies

NASA Astrophysics Data System (ADS)

Kueter, Nico; Soesilo, Joko; Fedortchouk, Yana; Nestola, Fabrizio; Belluco, Lorenzo; Troch, Juliana; Wälle, Markus; Guillong, Marcel; Von Quadt, Albrecht; Driesner, Thomas

2016-11-01

Diamonds in alluvial deposits in Southeast Asia are not accompanied by indicator minerals suggesting primary kimberlite or lamproite sources. The Meratus Mountains in Southeast Borneo (Province Kalimantan Selatan, Indonesia) provide the largest known deposit of these so-called "headless" diamond deposits. Proposals for the origin of Kalimantan diamonds include the adjacent Meratus ophiolite complex, ultra-high pressure (UHP) metamorphic terranes, obducted subcontinental lithospheric mantle and undiscovered kimberlite-type sources. Here we report results from detailed sediment provenance analysis of diamond-bearing Quaternary river channel material and from representative outcrops of the oldest known formations within the Alino Group, including the diamond-bearing Campanian-Maastrichtian Manunggul Formation. Optical examination of surfaces of diamonds collected from artisanal miners in the Meratus area (247 stones) and in West Borneo (Sanggau Area, Province Kalimantan Barat; 85 stones) points toward a classical kimberlite-type source for the majority of these diamonds. Some of the diamonds host mineral inclusions suitable for deep single-crystal X-ray diffraction investigation. We determined the depth of formation of two olivines, one coesite and one peridotitic garnet inclusion. Pressure of formation estimates for the peridotitic garnet at independently derived temperatures of 930-1250 °C are between 4.8 and 6.0 GPa. Sediment provenance analysis includes petrography coupled to analyses of detrital garnet and glaucophane. The compositions of these key minerals do not indicate kimberlite-derived material. By analyzing almost 1400 zircons for trace element concentrations with laser ablation ICP-MS (LA-ICP-MS) we tested the mineral's potential as an alternative kimberlite indicator. The screening ultimately resulted in a small subset of ten zircons with a kimberlitic affinity. Subsequent U-Pb dating resulting in Cretaceous ages plus a detailed chemical reflection make

Above-Ground Dimensions and Acclimation Explain Variation in Drought Mortality of Scots Pine Seedlings from Various Provenances

PubMed Central

Seidel, Hannes; Menzel, Annette

2016-01-01

Seedling establishment is a critical part of the life cycle, thus seedling survival might be even more important for forest persistence under recent and future climate change. Scots pine forests have been disproportionally more affected by climate change triggered forest-dieback. Nevertheless, some Scots pine provenances might prove resilient to future drought events because of the species’ large distributional range, genetic diversity, and adaptation potential. However, there is a lack of knowledge on provenance-specific survival under severe drought events and on how acclimation alters survival rates in Scots pine seedlings. We therefore conducted two drought-induced mortality experiments with potted Scots pine seedlings in a greenhouse. In the first experiment, 760 three-year-old seedlings from 12 different provenances of the south-western distribution range were subjected to the same treatment followed by the mortality experiment in 2014. In the second experiment, we addressed the question of whether acclimation to re-occurring drought stress events and to elevated temperature might decrease mortality rates. Thus, 139 four-year-old seedlings from France, Germany, and Poland were subjected to different temperature regimes (2012–2014) and drought treatments (2013–2014) before the mortality experiment in 2015. Provenances clearly differed in their hazard of drought-induced mortality, which was only partly related to the climate of their origin. Drought acclimation decreased the hazard of drought-induced mortality. Above-ground dry weight and height were the main determinants for the hazard of mortality, i.e., heavier and taller seedlings were more prone to mortality. Consequently, Scots pine seedlings exhibit a considerable provenance-specific acclimation potential against drought mortality and the selection of suitable provenances might thus facilitate seedling establishment and the persistence of Scots pine forest. PMID:27458477

Interoperability Using Lightweight Metadata Standards: Service & Data Casting, OpenSearch, OPM Provenance, and Shared SciFlo Workflows

NASA Astrophysics Data System (ADS)

Wilson, B. D.; Manipon, G.; Hua, H.; Fetzer, E.

2011-12-01

Under several NASA grants, we are generating multi-sensor merged atmospheric datasets to enable the detection of instrument biases and studies of climate trends over decades of data. For example, under a NASA MEASURES grant we are producing a water vapor climatology from the A-Train instruments, stratified by the Cloudsat cloud classification for each geophysical scene. The generation and proper use of such multi-sensor climate data records (CDR's) requires a high level of openness, transparency, and traceability. To make the datasets self-documenting and provide access to full metadata and traceability, we have implemented a set of capabilities and services using known, interoperable protocols. These protocols include OpenSearch, OPeNDAP, Open Provenance Model, service & data casting technologies using Atom feeds, and REST-callable analysis workflows implemented as SciFlo (XML) documents. We advocate that our approach can serve as a blueprint for how to openly "document and serve" complex, multi-sensor CDR's with full traceability. The capabilities and services provided include: - Discovery of the collections by keyword search, exposed using OpenSearch protocol; - Space/time query across the CDR's granules and all of the input datasets via OpenSearch; - User-level configuration of the production workflows so that scientists can select additional physical variables from the A-Train to add to the next iteration of the merged datasets; - Efficient data merging using on-the-fly OPeNDAP variable slicing & spatial subsetting of data out of input netCDF and HDF files (without moving the entire files); - Self-documenting CDR's published in a highly usable netCDF4 format with groups used to organize the variables, CF-style attributes for each variable, numeric array compression, & links to OPM provenance; - Recording of processing provenance and data lineage into a query-able provenance trail in Open Provenance Model (OPM) format, auto-captured by the workflow engine

77 FR 59643 - Notice of Intent To Repatriate Cultural Items: San Francisco State University NAGPRA Program, San...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-09-28

... chert tools, 84 ground stone tools, 90 bone tools, 1 ear spool, and 4 earplugs. Radiometric dating... tools, 13 chert tools, 40 obsidian tools, 77 bone tools, 1 shell tool, 1 lithic pendant, 2 steatite ear... obsidian tools, 1 chert tool, 12 ground stone tools, and 6 bone tools. The artifact assemblage indicates...

A Sr-Nd isotopic study of sand-sized sediment provenance and transport for the San Francisco Bay coastal system

USGS Publications Warehouse

Rosenbauer, Robert J.; Foxgrover, Amy C.; Hein, James R.; Swarzenski, Peter W.; Barnard, P.L.; Jaffee, B.E.; Schoellhamer, D.H.

2013-01-01

A diverse suite of geochemical tracers, including 87Sr/86Sr and 143Nd/144Nd isotope ratios, the rare earth elements (REEs), and select trace elements were used to determine sand-sized sediment provenance and transport pathways within the San Francisco Bay coastal system. This study complements a large interdisciplinary effort (Barnard et al., 2012) that seeks to better understand recent geomorphic change in a highly urbanized and dynamic estuarine-coastal setting. Sand-sized sediment provenance in this geologically complex system is important to estuarine resource managers and was assessed by examining the geographic distribution of this suite of geochemical tracers from the primary sources (fluvial and rock) throughout the bay, adjacent coast, and beaches. Due to their intrinsic geochemical nature, 143Nd/144Nd isotopic ratios provide the most resolved picture of where sediment in this system is likely sourced and how it moves through this estuarine system into the Pacific Ocean. For example, Nd isotopes confirm that the predominant source of sand-sized sediment to Suisun Bay, San Pablo Bay, and Central Bay is the Sierra Nevada Batholith via the Sacramento River, with lesser contributions from the Napa and San Joaquin Rivers. Isotopic ratios also reveal hot-spots of local sediment accumulation, such as the basalt and chert deposits around the Golden Gate Bridge and the high magnetite deposits of Ocean Beach. Sand-sized sediment that exits San Francisco Bay accumulates on the ebb-tidal delta and is in part conveyed southward by long-shore currents. Broadly, the geochemical tracers reveal a complex story of multiple sediment sources, dynamic intra-bay sediment mixing and reworking, and eventual dilution and transport by energetic marine processes. Combined geochemical results provide information on sediment movement into and through San Francisco Bay and further our understanding of how sustained anthropogenic activities which limit sediment inputs to the system (e

Pattern of biopsy-proven kidney disease in the elderly in a tertiary care hospital in India: a clinicopathological study.

PubMed

Bagchi, Soumita; Mittal, Parmod; Singh, Geetika; Agarwal, Sanjay Kumar; Singh, Lavleen; Bhowmik, Dipankar; Mahajan, Sandeep; Dinda, Amit

2016-04-01

An aging population is an important demographic issue in India. The knowledge base about kidney diseases among the elderly Indians is inadequate. We aim to delineate the clinical profile and spectrum of biopsy-proven kidney disease in elderly patients. Records of all elderly patients (≥60 years) who had undergone kidney biopsy in the nephrology department from January 2010 to December 2014 were reviewed. Their clinical details and laboratory investigations at the time of biopsy were noted. Details of kidney biopsy were recorded from their biopsy reports. In total, 1728 patients underwent kidney biopsy during this period and 124 were elderly (7.2%). Their mean age was 64.9 ± 4.9 years, and they were predominantly males (63.7%). Mean serum creatinine was 3.0 ± 2.8 mg/dl, proteinuria was 4.0 ± 2.7 g/day, and 39.5% had microscopic hematuria. The most common indications for biopsy were nephrotic syndrome (NS)--39.5% and acute kidney injury/rapidly progressive glomerulonephritis (AKI/RPGN)--24.2%. Another 8.1% patients had NS with AKI. MN (39.0%) was the chief cause of NS, and pauci-immune crescentic glomerulonephritis (GN) (28.2%) was the leading cause of AKI/RPGN. MN, pauci-immune crescentic GN and acute on chronic tubulointerstitial nephritis (A/CTIN) and acute tubular injury (ATI) were more common in the elderly, while MCD, FSGS, IgA nephropathy and lupus nephritis were more frequent in the younger patients. 68.5% of the elderly patients biopsied were diagnosed with a renal disease which was potentially amenable to specific treatment. The spectrum of biopsy-proven kidney disease in the elderly Indians seen in our tertiary care hospital varies from the younger population. Kidney biopsy provides useful information with therapeutic and prognostic implications in these patients. The percentage of elderly patients among the total biopsied population is low in India, and these patients present late with renal dysfunction. Prospective studies are needed to assess the

Provenance of the terrestrial planets.

PubMed

Wetherill, G W

1994-01-01

Earlier work on the simultaneous accumulation of the asteroid belt and the terrestrial planets is extended to investigate the relative contribution to the final planets made by material from different heliocentric distances. As before, stochastic variations intrinsic to the accumulation processes lead to a variety of final planetary configurations, but include systems having a number of features similar to our solar system. Fifty-nine new simulations are presented, from which thirteen are selected as more similar to our solar system than the others. It is found that the concept of "local feeding zones" for each final terrestrial planet has no validity for this model. Instead, the final terrestrial planets receive major contributions from bodies ranging from 0.5 to at least 2.5 AU, and often to greater distances. Nevertheless, there is a correlation between the final heliocentric distance of a planet and its average provenance. Together with the effect of stochastic fluctuations, this permits variation in the composition of the terrestrial planets, such as the difference in the decompressed density of Earth and Mars. Biologically important light elements, derived from the asteroidal region, are likely to have been significant constituents of the Earth during its formation.

Influence of tree provenance on biogenic VOC emissions of Scots pine (Pinus sylvestris) stumps

NASA Astrophysics Data System (ADS)

Kivimäenpää, Minna; Magsarjav, Narantsetseg; Ghimire, Rajendra; Markkanen, Juha-Matti; Heijari, Juha; Vuorinen, Martti; Holopainen, Jarmo K.

2012-12-01

Resin-storing plant species such as conifer trees can release substantial amounts of volatile organic compounds (VOCs) into the atmosphere under stress circumstances that cause resin flow. Wounding can be induced by animals, pathogens, wind or direct mechanical damage e.g. during harvesting. In atmospheric modelling of biogenic VOCs, actively growing vegetation has been mostly considered as the source of emissions. Root systems and stumps of resin-storing conifer trees could constitute a significant store of resin after tree cutting. Therefore, we assessed the VOC emission rates from the cut surface of Scots pine stumps and estimated the average emission rates for an area with a density of 2000 stumps per ha. The experiment was conducted with trees of one Estonian and three Finnish Scots pine provenances covering a 1200 km gradient at a common garden established in central Finland in 1991. VOC emissions were dominated by monoterpenes and less than 0.1% of the total emission was sesquiterpenes. α-Pinene (7-92% of the total emissions) and 3-carene (0-76% of the total emissions) were the dominant monoterpenes. Proportions of α-pinene and camphene were significantly lower and proportions of 3-carene, sabinene, γ-terpinene and terpinolene higher in the southernmost Saaremaa provenance compared to the other provenances. Total terpene emission rates (standardised to +20 °C) from stumps varied from 27 to 1582 mg h-1 m-2 when measured within 2-3 h after tree cutting. Emission rates decreased rapidly to between 2 and 79 mg h-1 m-2 at 50 days after cutting. The estimated daily terpene emission rates on a hectare basis from freshly cut stumps at a cut tree density of 2000 per ha varied depending on provenance. Estimated emission ranges were 100-710 g ha-1 d-1 and 137-970 g ha-1 d-1 in 40 and in 60 year-old forest stands, respectively. Our result suggests that emission directly from stump surfaces could be a significant source of monoterpene emissions for a few weeks after

Climatic control of bud burst in young seedlings of nine provenances of Norway spruce.

PubMed

Søgaard, Gunnhild; Johnsen, Oystein; Nilsen, Jarle; Junttila, Olavi

2008-02-01

Detailed knowledge of temperature effects on the timing of dormancy development and bud burst will help evaluate the impacts of climate change on forest trees. We tested the effects of temperature applied during short-day treatment, duration of short-day treatment, duration of chilling and light regime applied during forcing on the timing of bud burst in 1- and 2-year-old seedlings of nine provenances of Norway spruce (Picea abies (L.) Karst.). High temperature during dormancy induction, little or no chilling and low temperature during forcing all delayed dormancy release but did not prevent bud burst or growth onset provided the seedlings were forced under long-day conditions. Without chilling, bud burst occurred in about 20% of seedlings kept in short days at 12 degrees C, indicating that young Norway spruce seedlings do not exhibit true bud dormancy. Chilling hastened bud burst and removed the long photoperiod requirement, but the effect of high temperature applied during dormancy induction was observed even after prolonged chilling. Extension of the short-day treatment from 4 to 8 or 12 weeks hastened bud burst. The effect of treatments applied during dormancy development was larger than that of provenance; in some cases no provenance effect was detected, but in 1-year-old seedlings, time to bud burst decreased linearly with increasing latitude of origin. Differences among provenances were complicated by different responses of some origins to light conditions under long-day forcing. In conclusion, timing of bud burst in Norway spruce seedlings is significantly affected by temperature during bud set, and these effects are modified by chilling and environmental conditions during forcing.

Eastern Equatorial Pacific Dust Provenance on Deglacial Timescales

NASA Astrophysics Data System (ADS)

Xie, R.; Marcantonio, F.

2008-12-01

Changing patterns of eolian dust deposition preserved in deep-sea sediments have the potential to provide us with a better understanding of changes in past atmospheric circulation. One way in which to determine the provenance of dust in deep-sea sediments is to use radiogenic isotopic tracers which can fingerprint potential dust sources. Models (e.g., [1]) suggest that sources of dust to the Eastern Equatorial Pacific (EEP) are from areas as diverse as Asia, North, Central, and South America, and, perhaps, even Africa. Here, we investigate spatial and temporal changes in the provenance of the eolian component in the EEP by measuring Pb, Sr, and Nd isotope ratios in dust extracted from sediments along a transect at 110oW from 7oN to 3oS (ODP sites 853 - 848). In this region, although fluxes of dust were higher during the last glacial maximum (LGM) than those in the Holocene by up to 100%, the glacial flux of dust displayed a shallower meridional gradient [2]. However, it is unclear whether this shallower gradient is due to a mean southerly displacement of the Intertropical Convergence Zone (ITCZ). Most of the dust trying to pass through the ITCZ will be scavenged and rained out at the ITCZ. Along the meridional gradient, therefore, temporal variations in the Pb, Sr, and Nd isotopic fingerprints of the distinct dust sources will determine the extent to which the position of the ITCZ changes on deglacial timescales. [1] Mahowald et al., 2005, Global Biogeochemical Cycles 19, GB4025. [2] McGee et al., 2007, EPSL 257, 215-230.

Variation in pin knot frequency in black walnut lumber cut from a small provenance/progeny test

Treesearch

Peter Y. S. Chen; Robert E. Bodkin; J. W. Van Sambeek

1995-01-01

This small study examined the frequency of knots (> 1 growth ring), pin knots (latent or suppressed buds), and pin knot clusters in 414 black walnut (Juglans nigra L.) lumber from 42 logs. 18 to 21 cm dbh, cut from a 14-year-old provenance/progeny test. Two boards from opposite sides of each log were analyzed for number of knots, pin knots, and...

The Apollo 16 Mare Component: Petrography, Geochemistry, and Provenance

NASA Technical Reports Server (NTRS)

Zeigler, R. A.; Haskin, L. A.; Korotev, R. L.; Jolliff, B. L.; Gillis, J. J.

2003-01-01

The A16 (Apollo16) site in the lunar nearside highlands is 220 km from the nearest mare. Thus it is no surprise that mare basalt samples are uncommon at the site. Here, we present the petrography and geochemistry of 5 new mare basalt samples found at the A16 site. We also discuss possible provenances of all A16 mare basalt samples using high-resolution global data for the distribution of Fe and Ti on the lunar surface derived from Clementine UV-VIS data [1-2].

Mineralogy of Nicobar Fan turbidites (IODP Leg 362): Himalayan provenance and diagenetic control.

NASA Astrophysics Data System (ADS)

Limonta, M.; Garzanti, E.; Ando, S.; Carter, A.; Milliken, K. L.; Pickering, K. T.

2017-12-01

In this study we use quantitative petrographic and heavy-mineral data on silt-sized and sand-sized sediments from the Nicobar Fan turbiditic depositional system to unravel their provenance and discriminate between pre-depositional and post-depositional processes controlling sediment mineralogy. Eighteen samples from the two drill sites U1480 e U1481, collected down to a depth of 1400 m during International Ocean Discovery Expedition 362, were selected for analysis. A complete section of the sedimentary section overlying oceanic basaltic basement was recovered at the U1480 drill site, whereas the U1481 drill site, located 35 km to the southeast, focused on the deeper interval of the sedimentary section overlying oceanic basement. Here we illustrate the compositional trends observed throughout the recovered succession, and compare heavy-mineral suites characterizing sediments drilled at the two U1480 and U1481 sites to check for potential differences in sediment provenance over a relatively short distance in trench settings. Diagenetic control with increasing burial depth was also specifically investigated. In Pleistocene sediments at depths of a few tens of meters only, rich heavy-mineral assemblages include mainly hornblende, epidote, and garnet, associated with apatite, clinopyroxene, tourmaline, sillimanite, kyanite, zircon, titanite, and rare staurolite and rutile, testifying to long-distance provenance from the Himalayan range via the Ganga-Brahmaputra fluvio-deltaic-turbiditic system. Heavy-mineral concentration shows a progressive decrease with burial depth, pointing to selective diagenetic dissolution of less durable detrital minerals. Clinopyroxene becomes rare below 400 m depth and was not recorded below 500 m depth, where amphibole decreases notably in relative abundance. More durable heavy minerals, including zircon, tourmaline, apatite, garnet and epidote, consequently tend to be relatively enriched with increasing age and burial depth. Petrographic and

Survival, growth, and juvenile-mature correlations in a West Virginia sugar maple provenance test 25 years after establishment

Treesearch

Thomas M. Schuler

1994-01-01

Survival, total height, diameter at breast height (d.b.h.), and stem quality of sugar maple trees of different provenances were compared 25 years after establishment in north-central West Virginia. Provenances were from Michigan, Minnesota, West Virginia, Massachusetts, New Hampshire, Vermont, Maine, and Quebec, Canada. There were significant differences between...

Ontology development for provenance tracing in National Climate Assessment of the US Global Change Research Program

NASA Astrophysics Data System (ADS)

Ma, X.; Zheng, J. G.; Goldstein, J.; Duggan, B.; Xu, J.; Du, C.; Akkiraju, A.; Aulenbach, S.; Tilmes, C.; Fox, P. A.

2013-12-01

The periodical National Climate Assessment (NCA) of the US Global Change Research Program (USGCRP) [1] produces reports about findings of global climate change and the impacts of climate change on the United States. Those findings are of great public and academic concerns and are used in policy and management decisions, which make the provenance information of findings in those reports especially important. The USGCRP is developing a Global Change Information System (GCIS), in which the NCA reports and associated provenance information are the primary records. We were modeling and developing Semantic Web applications for the GCIS. By applying a use case-driven iterative methodology [2], we developed an ontology [3] to represent the content structure of a report and the associated provenance information. We also mapped the classes and properties in our ontology into the W3C PROV-O ontology [4] to realize the formal presentation of provenance. We successfully implemented the ontology in several pilot systems for a recent National Climate Assessment report (i.e., the NCA3). They provide users the functionalities to browse and search provenance information with topics of interest. Provenance information of the NCA3 has been made structured and interoperable by applying the developed ontology. Besides the pilot systems we developed, other tools and services are also able to interact with the data in the context of the 'Web of data' and thus create added values. Our research shows that the use case-driven iterative method bridges the gap between Semantic Web researchers and earth and environmental scientists and is able to be deployed rapidly for developing Semantic Web applications. Our work also provides first-hand experience for re-using the W3C PROV-O ontology in the field of earth and environmental sciences, as the PROV-O ontology is recently ratified (on 04/30/2013) by the W3C as a recommendation and relevant applications are still rare. [1] http

Variation among northern red oak provenances in bark thickness:dbh ratios

Treesearch

Matthew S. Russell; Jeffrey O. Dawson

1995-01-01

Differences in bark thickness in relation to diameter at breast height were observed in a 30-32 year old Illinois planting of 32 provenances of northern red oak (Quercus rubra) from throughout its natural range. Bark thickness by itself is often a good indication of relative cambial insulation from fire. Fire resistance in trees can largely be...

Significance of wood terpenoids in the resistance of Scots pine provenances against the old house borer, Hylotrupes bajulus, and brown-rot fungus, Coniophora puteana.

PubMed

Nerg, A M; Heijari, J; Noldt, U; Viitanen, H; Vuorinen, M; Kainulainen, P; Holopainen, J K

2004-01-01

We tested how terpenoid (i.e., monoterpenes and resin acids) composition and concentration in wood affects resistance against wood-borers and decaying fungi. Scots pine (Pinus sylvestris) wood from nine provenances having variable terpenoid profiles was studied against the old house borer, Hylotrupes bajulus, and the decay fungus, Coniophora puteana. Provenances represented a 1200-km N-S transect from Estonia to northern Finland, but they were all cultivated for 7 years in the same nursery field, in central Finland. Mean relative growth rate (MRGR) of small H. hajulus larvae positively correlated with the total monoterpene concentration of wood, and feeding was associated with high proportion of levopimaric+palustric acid in wood. Provenance did not affect the MRGR of small or big larvae, but big larvae consumed more wood and produced more frass on the northern Ylitornio trees than on the southern Rakvere and Ruokolahti trees. Low beta-pinene and total monoterpene concentration and low beta: alpha-pinene ratio in wood were all associated with a high number of eggs. The most northern Muonio provenance was the most favored as an oviposition site, differing significantly from Saaremaa, Tenhola, and Suomussalmi. Wood from Saaremaa, Tenhola, Ruokolahti, and Suomussalmi provenance was most resistant against decay fungus, differing significantly from that of Kinnula provenance. However, decay resistance was not clearly associated with the concentrations of wood terpenoids. These results suggest that monoterpene composition of wood affects resistance against wood-boring Cerambycid beetles, but resistance against wood-decaying fungi is not as clearly associated with wood terpenoids.

Accessing the application of in situ cosmogenic 14C to surface exposure dating of amorphous SiO2

NASA Astrophysics Data System (ADS)

Cesta, J. M.; Goehring, B. M.; Ward, D. J.

2017-12-01

We assess the feasibility and utility of in situ cosmogenic 14C as a geochronometer for landforms composed of amorphous SiO2 through the comparison of 14C surface exposure ages to independently determined eruption ages on Obsidian Dome, California. Landforms composed of amorphous SiO2 phases are difficult to date by conventional cosmogenic nuclide methods due to several complications that may arise (e.g., inability to remove meteoric contamination). The onset of an increased understanding of production rates and analytical measurement of in situ 14C in SiO2 provides an opportunity to address this limitation. Obsidian Dome is a 600-year-old phreatomagmatic dome of the Mono-Inyo Craters located in Inyo County, California, and consists of vesicular pumice, obsidian, and rhyolite. Exposure ages from eight obsidian and banded pumice and obsidian surface samples range from 3947 ± 678 to 914 ± 134 years, all significantly older than the accepted radiocarbon age of 650-550 years. δ13C values for the samples range between +2.65‰ and +1.34‰ and show a negative correlation with CO2 yield. The `too old' exposure ages coupled with this negative correlation between δ13C and CO2 yield suggests the incorporation of an atmospheric component of 14C. Measurement of 14C concentrations in shielded, subsurface samples will assist in isolating the atmospheric 14C component and aid in correcting the surface exposure ages.

Federated provenance of oceanographic research cruises: from metadata to data

NASA Astrophysics Data System (ADS)

Thomas, Rob; Leadbetter, Adam; Shepherd, Adam

2016-04-01

The World Wide Web Consortium's Provenance Data Model and associated Semantic Web ontology (PROV-O) have created much interest in the Earth and Space Science Informatics community (Ma et al., 2014). Indeed, PROV-O has recently been posited as an upper ontology for the alignment of various data models (Cox, 2015). Similarly, PROV-O has been used as the building blocks of a data release lifecycle ontology (Leadbetter & Buck, 2015). In this presentation we show that the alignment between different local data descriptions of an oceanographic research cruise can be achieved through alignment with PROV-O and that descriptions of the funding bodies, organisations and researchers involved in a cruise and its associated data release lifecycle can be modelled within a PROV-O based environment. We show that, at a first-order, this approach is scalable by presenting results from three endpoints (the Biological and Chemical Oceanography Data Management Office at Woods Hole Oceanographic Institution, USA; the British Oceanographic Data Centre at the National Oceanography Centre, UK; and the Marine Institute, Ireland). Current advances in ontology engineering, provide pathways to resolving reasoning issues from varying perspectives on implementing PROV-O. This includes the use of the Information Object design pattern where such edge cases as research cruise scheduling efforts are considered. PROV-O describes only things which have happened, but the Information Object design pattern allows for the description of planned research cruises through its statement that the local data description is not the the entity itself (in this case the planned research cruise) and therefore the local data description itself can be described using the PROV-O model. In particular, we present the use of the data lifecycle ontology to show the connection between research cruise activities and their associated datasets, and the publication of those data sets online with Digital Object Identifiers and

Modern sands of South America: composition, provenance and global significance

NASA Astrophysics Data System (ADS)

Potter, P. E.

1994-03-01

Standard petrographic methods were used to study 604 modern sands from South America, of which 351 came from rivers and 253 from beaches. In spite of the wide geomorphic contrasts, these sands belong to only three great families: (1) an immature Andean family of lithic arenites rich in volcanic and metamorphic grains that covers about 30% of South America; (2) a cratonic association rich in quartz that covers about 62% of the continent; and (3) a transitional, molasse association, which occurs between these two and covers only about 8% of the continent. The grand arithmetic average Q:F: Rf ratio for the entire continent is 60:11:29 and the area-weighted, carbonate-free average Qa:Fa:Rfa is 68:10:22, a superior continental estimate, and the first ever for an entire continent. Rock fragments are the most informative of all the provenance indicators and in South America they range from tropical alterites of the cratonic family through the dominant volcanic and metamorphic grains of the Andean family to biogenic carbonate in beach sands. Carbonate grains are almost totally absent in modern South American rivers because of present day tropical weathering and a long geological evolution that has favored sand production. They are present in many of the beach sands, however, and are most abundant along the tropical Brazilian and Caribbean coasts. Metamorphic grains rival volcanics as earmarks of the Andean family and survive tropical weathering far better than volcanic grains. There is a strong association between continental soil types and the composition of river sand, but the ultimate controls are tectonic history — the ancient landscapes preserved on the Gondwana shields of South America versus the tectonically young landscapes of the Andes — and climate. Climate can either cause ‘leaks’ to a far distant ocean where weathering is retarded by aridity or it can serve as a barrier to continental sand dispersion, where tropical weathering eliminates unstable grains

Effects of temperature and drought manipulations on seedlings of Scots pine provenances.

PubMed

Taeger, S; Sparks, T H; Menzel, A

2015-03-01

Rising temperatures and more frequent and severe climatic extremes as a consequence of climate change are expected to affect growth and distribution of tree species that are adapted to current local conditions. Species distribution models predict a considerable loss of habitats for Pinus sylvestris. These models do not consider possible intraspecific differences in response to drought and warming that could buffer those impacts. We tested 10 European provenances of P. sylvestris, from the southwestern to the central European part of the species distribution, for their response to warming and to drought using a factorial design. In this common-garden experiment the air surrounding plants was heated directly to prevent excessive soil heating, and drought manipulation, using a rain-out shelter, permitted almost natural radiation, including high light stress. Plant responses were assessed as changes in phenology, growth increment and biomass allocation. Seedlings of P. sylvestris revealed a plastic response to drought by increased taproot length and root-shoot ratios. Strongest phenotypic plasticity of root growth was found for southwestern provenances, indicating a specific drought adaptation at the cost of overall low growth of aboveground structures even under non-drought conditions. Warming had a minor effect on growth but advanced phenological development and had a contrasting effect on bud biomass and diameter increment, depending on water availability. The intraspecific variation of P. sylvestris provenances could buffer climate change impacts, although additional factors such as the adaptation to other climatic extremes have to be considered before assisted migration could become a management option. © 2014 German Botanical Society and The Royal Botanical Society of the Netherlands.

Characterization of Particles Created By Laser-Driven Hydrothermal Processing

DTIC Science & Technology

2016-06-01

created by laser-driven hydrothermal processing, an innovative technique used for the ablation of submerged materials. Two naturally occurring...processing, characterization, obsidian, tektite, natural glass 15. NUMBER OF PAGES 89 16. PRICE CODE 17. SECURITY CLASSIFICATION OF REPORT...technique used for the ablation of submerged materials. Two naturally occurring materials, obsidian and tektite, were used as targets for this technique

The King within Each of Us

ERIC Educational Resources Information Center

Crossley-Holland, Kevin

2005-01-01

The author describes his approach to retelling Arthurian legends, where he wrote two stories in tandem: one a historical novel in which a boy, eager to serve as a squire and to go on crusade, is given a piece of obsidian, the other of stories, the Arthurian legends, that this boy sees in the obsidian. These became a trilogy. He states that while…

Sycamore Seed Germination: The Effects of Provenance, Stratification, Temperature, and Parent Tree

Treesearch

Charles D. Webb; Robert E. Farmer

1968-01-01

Various stratification periods and germination temperatures were applied to sycamore seed collected along the Chattahoochee River from north Georgia to west Florida. Results showed that percent and speed of germination were greater for seed from southern than from northern provenances. Percent and speed of germination increased as temperature increased. The...

Ion Beam Analysis for the provenance attribution of lapis lazuli used in glyptic art: The case of the "Collezione Medicea"

NASA Astrophysics Data System (ADS)

Re, Alessandro; Angelici, Debora; Lo Giudice, Alessandro; Corsi, Jacopo; Allegretti, Silvia; Biondi, Alessia Fabiola; Gariani, Gianluca; Calusi, Silvia; Gelli, Nicla; Giuntini, Lorenzo; Massi, Mirko; Taccetti, Francesco; La Torre, Leonardo; Rigato, Valentino; Pratesi, Giovanni

2015-04-01

The first part of this study reports on the wide campaign for the extension of the database of both trace and minor elements concentration in diopside by means of μ-PIXE measurements and of luminescence spectra in diopside and wollastonite by means of μ-IL measurements. Diopside and wollastonite are actually two of the most common lapis lazuli-forming minerals. For this former part of the study, we analysed rocks of known provenance at the microbeam line of the LNL laboratories in Legnaro (PD) of the Istituto Nazionale di Fisica Nucleare (INFN). The latter part of the paper is dedicated to the non-invasive Ion Beam Analyses (IBA) characterisation of six pieces of the "Collezione Medicea". The collection is exhibited at the Museum of Natural History (University of Firenze) and belonged to the Medici family. It includes artworks made of lapis lazuli manufactured in the 16th and 17th centuries but there is not precise information about the provenance of the used raw material. Results on the artworks show, as expected, that the Chilean provenance of the material used for the analysed artworks has to be excluded. Lapis lazuli used for five of the analysed artworks can be ascribed to the Afghan quarry district, while one object cannot be attributed only on the base of diopside and wollastonite analysis.

Applying successfully proven measures in roadway safety to reduce harmful collisions in SC.

DOT National Transportation Integrated Search

2017-06-06

The overall goal of this research was to identify proven successful safety programs used in other states and assess the potential for safety improvement if similar programs were implemented in South Carolina. The research team not only sought out eng...

Glomerular Immune Deposits Are Predictive of Poor Long-Term Outcome in Patients with Adult Biopsy-Proven Minimal Change Disease: A Cohort Study in Korea.

PubMed

Lee, Sung Woo; Yu, Mi-Yeon; Baek, Seon Ha; Ahn, Shin-Young; Kim, Sejoong; Na, Ki Young; Chae, Dong-Wan; Chin, Ho Jun

2016-01-01

There has been little published information on risk factors for poor long-term outcome in adult biopsy-proven minimal change disease (MCD). Data from sixty-three adult, biopsy-proven primary MCD patients treated at a tertiary university hospital between 2003 and 2013 were analyzed. Baseline clinical and pathologic factors were assessed for the associations with composite outcome of creatinine doubling, end stage renal disease, or all-cause mortality. During a median (interquartile) 5.0 (2.8-5.0) years, the composite outcome occurred in 11.1% (7/63) of patients. The rate of glomerular immune deposits was 23.8% (15/63). Patients with glomerular immune deposits showed a significantly lower urine protein creatinine ratio than those without deposits (P = 0.033). The rate of non-responders was significantly higher in patients with glomerular immune deposits than in those without deposits (P = 0.033). In patients with deposits, 26.7% (4/15) developed the composite outcome, while only 6.3% (3/48) developed the composite outcome among those without deposits (P = 0.049). In multivariate Cox proportional hazards regression analysis, the presence of glomerular immune deposits was the only factor associated with development of the composite outcome (hazard ratio: 2.310, 95% confidence interval: 1.031-98.579, P = 0.047). Glomerular immune deposits were associated with increased risk of a composite outcome in adult MCD patients. The higher rate of non-responders in patients with deposits might be related to the poor outcome. Future study is needed.

Frequency of familial Mediterranean fever (MEFV) gene mutations in patients with biopsy-proven primary glomerulonephritis.

PubMed

Huzmeli, Can; Candan, Ferhan; Bagci, Gokhan; Alaygut, Demet; Yilmaz, Ali; Gedikli, Asim; Bagci, Binnur; Timucin, Meryem; Sezgin, Ilhan; Kayatas, Mansur

2017-11-01

Primary glomerulopathies are those disorders that affect glomerular structure, function, or both in the absence of a multisystem disorder. We aimed to evaluate the frequency of MEFV gene mutation to show possible coexistence of FMF in patients diagnosed with biopsy-proven primary glomerulonephritis (GN). A total of 64 patients with biopsy-proven primary GN were included in the study. MEFV gene mutations examined retrospectively. The mean age of patients was 39.6 ± 13.4 (range 18-69), 35 of patients were female and 29 of patients were male. Of the 64 patients, 17 were mesangial proliferative glomerulonephritis (MsPGN), 15 were IgA nephropathy (IgAN), 12 were membranous glomerulonephritis (MGN), 11 were focal segmental glomerulosclerosis (FSGS), three were membranous proliferative glomerulonephritis (MPGN), three were immune complex glomerulonephritis (ICGN), two were minimal change disease (MCD), and one was IgM nephropathy (IgMN). MEFV gene mutation was detected in 35.9% (23) of these patients. The most frequently detected mutations were E148Q and M694V. Twelve cases (18.75% of GN patients) with MEFV gene mutation were diagnosed as FMF phenotype I. The frequency of MEFV gene mutation was detected at a high rate of 35.9%. Further studies with larger populations are needed to clarify the importance of these mutations on clinical progression of glomerulonephritis.

Discrimination of fine-grained sediment provenance using geochemical elements on the inner shelf of the Korean Strait (South Sea), Korea

NASA Astrophysics Data System (ADS)

Um, I. K.; Choi, M. S.

2017-12-01

The central South Sea mud (CSSM) is located between the Heuksan mud belt (HMB) in the Yellow Sea and Korea Strait shelf mud (KSSM) in the East Sea and developed along the eastward transport pathway in the South Sea. Major elements (Al, Fe, Mg, and Ti), trace elements (Li, Cs, Sc, and Rb), and rare earth elements (REEs) in the fine-grained sediments (<15 μm) of thirty-two surface sediment samples on the CSSM were analyzed to determine the fine-grained sediment provenance. The spatial distribution of the analyzed elements showed a clear separation of the western (W-CSSM) and eastern (E-CSSM) regions of the CSSM. Concentrations of Fe, Ti, Mg, Sc, and REEs were higher in the W-CSSM, whereas concentrations of Al, Cs, Li, and Rb were higher in the E-CSSM. The ratios of trace metals ((Cs+Sc)/Li and Rb/Li) can be successfully used as a provenance indicator in the study area but REEs compositions could not be used to track the provenance of fine-grained sediments because of a grain size effect. The mixing relationships of the provenance indicators showed that the fine-grained sediments of the CSSM comprise a mixture of the sediments discharged from the Seomjin River (SRS) and sediments eroded and transported from the Heuksan mud belt (HMBS) area by the Korean coastal current. Sediments originating from the HMB were deposited mostly in the W-CSSM, whereas those from the Seomjin River were deposited mostly in the E-CSSM

Provenance and depositional conditions of Cretaceous-Paleogene boundary sandstones from northeastern Mexico

NASA Astrophysics Data System (ADS)

Rehrmann, Stephanie; Augustsson, Carita; Izaguirre Valdez, Rocio Nereyda; Jenchen, Uwe; Schulte, Peter

2012-12-01

17-140 in the Burgos and La Popa Basin, respectively) and influences from mafic source rocks (Th/Sc = 0.4-1.1; Ti/Nb = 350-510). Therefore we suggest that all studied successions share a common provenance with transport of recycled orogenic metasedimentary components from northwestern Mexico and magmatic arc material from western Mexico. Subsequently, longshore currents mixed the detritus with limestone clasts derived from the tectonically active Sierra Madre Oriental, which probably is the cause for compositional changes in the sandstones. Due to increased sediment input from western Mexico at the K-Pg boundary, provenance changes cannot be related to the Chicxulub impact.

Simple approach to sediment provenance tracing using element analysis and fundamental principles

NASA Astrophysics Data System (ADS)

Matys Grygar, Tomas; Elznicova, Jitka; Popelka, Jan

2016-04-01

slightly but systematically element ratios in solids, (3) the geochemistry and fates of the finest particles, neoformed by weathering and reactive during transport and storage in fluvial system, are different than those of the parent material and its less mature coarse weathering products, and (4) most inter-element ratios and some grain-size effects are non-linear that endanger assumption on additivity of properties in components mixing. We are aware we offer only a conceptual model and not a novel algorithm for quantification of sediment sources, which could be tested in practical studies. On the other hand, we consider element fractionation by exogenic processes fascinating as they are poorly described but relevant not only for provenance tracing but also for general environmental geochemistry.

Citation and Recognition of contributions using Semantic Provenance Knowledge Captured in the OPeNDAP Software Framework

NASA Astrophysics Data System (ADS)

West, P.; Michaelis, J.; Lebot, T.; McGuinness, D. L.; Fox, P. A.

2014-12-01

Providing proper citation and attribution for published data, derived data products, and the software tools used to generate them, has always been an important aspect of scientific research. However, It is often the case that this type of detailed citation and attribution is lacking. This is in part because it often requires manual markup since dynamic generation of this type of provenance information is not typically done by the tools used to access, manipulate, transform, and visualize data. In addition, the tools themselves lack the information needed to be properly cited themselves. The OPeNDAP Hyrax Software Framework is a tool that provides access to and the ability to constrain, manipulate, and transform, different types of data from different data formats, into a common format, the DAP (Data Access Protocol), in order to derive new data products. A user, or another software client, specifies an HTTP URL in order to access a particular piece of data, and appropriately transform it to suit a specific purpose of use. The resulting data products, however, do not contain any information about what data was used to create it, or the software process used to generate it, let alone information that would allow the proper citing and attribution to down stream researchers and tool developers. We will present our approach to provenance capture in Hyrax including a mechanism that can be used to report back to the hosting site any derived products, such as publications and reports, using the W3C PROV recommendation pingback service. We will demonstrate our utilization of Semantic Web and Web standards, the development of an information model that extends the PROV model for provenance capture, and the development of the pingback service. We will present our findings, as well as our practices for providing provenance information, visualization of the provenance information, and the development of pingback services, to better enable scientists and tool developers to be

A recipe for the use of rutile in sedimentary provenance analysis

NASA Astrophysics Data System (ADS)

Triebold, Silke; von Eynatten, Hilmar; Zack, Thomas

2012-12-01

Rutile has received considerable attention in the last decade as a valuable petrogenetic indicator mineral. Based on both new and previously published data, we carve out advantages and pitfalls regarding TiO2-minerals in sedimentary provenance analysis. This results in a recipe for the use of rutile in provenance studies. The main points are: Rutile geochemistry from different grain size fractions does not differ systematically, and hence rutiles should be extracted from the fraction containing the most rutile grains (usually 63-200 μm). Similarly, different magnetic susceptibility of rutile does not systematically imply different trace element composition. Before interpretation of TiO2-mineral data, it is important to determine the polymorph type. Rutile, anatase and brookite appear to differ systematically in trace element composition. As an alternative to Raman spectroscopy, chemical classification according to Nb, Cr, Sn, Fe, V, and Zr concentrations can be applied. For rutile, a new host lithology discrimination scheme based on Cr-Nb systematics is introduced (x = 5 ∗ (Nb [ppm] - 500) - Cr [ppm]), which leads to better classification results than previously published discrimination methods. According to this equation, metamafic rutiles have negative values of x, while metapelitic rutiles have positive values. Evaluation of the growth temperature calculations of metamorphic rutile after different authors shows that the equations given by Tomkins et al. (2007) should be applied to both metamafic and metapelitic rutiles. Although there is a pressure effect on the Zr incorporation in rutile, the pressure range for most rutiles of 5-15 kbar introduces an uncertainty in calculated temperature of no more than ± 35 °C. The distribution of calculated temperatures from detrital rutiles is crucial; only well-defined temperature populations should be used for thermometry interpretation.

Spanish melons (Cucumis melo L.) of the Madrid provenance: A unique germplasm reservoir

USDA-ARS?s Scientific Manuscript database

Melon (Cucumis melo L.) landraces of the Madrid provenance, Spain, have received national distinction for their high fruit quality and sensorial attributes. More specifically, a unique array of Group Inodorus landraces have been continuously cultivated and conserved by farmers in the municipality o...

Quantifying sediment provenance using multiple composite fingerprints in a small watershed in Oklahoma

USDA-ARS?s Scientific Manuscript database

Quantitative information on sediment provenance is badly needed for calibration and validation of process-based soil erosion models. However, sediment source data are rather limited due to difficulties in direct measurement of various source contributions at a watershed scale. The objectives are t...

Sediment provenance in contractional orogens: The detrital zircon record from modern rivers in the Andean fold-thrust belt and foreland basin of western Argentina

NASA Astrophysics Data System (ADS)

Capaldi, Tomas N.; Horton, Brian K.; McKenzie, N. Ryan; Stockli, Daniel F.; Odlum, Margaret L.

2017-12-01

This study analyzes detrital zircon U-Pb age populations from Andean rivers to assess whether active synorogenic sedimentation accurately records proportional contributions from varied bedrock source units across different drainage areas. Samples of modern river sand were collected from west-central Argentina (28-33°S), where the Andes are characterized by active uplift and deposition in diverse contractional provinces, including (1) hinterland, (2) wedge-top, (3) proximal foreland, and (4) distal broken foreland basin settings. Potential controls on sediment provenance were evaluated by comparing river U-Pb age distributions with predicted age spectra generated by a sediment mixing model weighted by relative catchment exposure (outcrop) areas for different source units. Several statistical measures (similarity, likeness, and cross-correlation) are employed to compare how well the area-weighted model predicts modern river age populations. (1) Hinterland basin provenance is influenced by local relief generated along thrust-bounded ranges and high zircon fertility of exposed crystalline basement. (2) Wedge-top (piggyback) basin provenance is controlled by variable lithologic durability among thrust-belt bedrock sources and recycled basin sediments. (3) Proximal foreland (foredeep) basin provenance of rivers and fluvial megafans accurately reflect regional bedrock distributions, with limited effects of zircon fertility and lithologic durability in large (>20,000 km2) second-order drainage systems. (4) In distal broken segments of the foreland basin, regional provenance signatures from thrust-belt and hinterland areas are diluted by local contributions from foreland basement-cored uplifts.

Axial Belt Provenance: modern river sands from the core of collision orogens

NASA Astrophysics Data System (ADS)

Resentini, A.; Vezzoli, G.; Paparella, P.; Padoan, M.; Andò, S.; Malusà, M.; Garzanti, E.

2009-04-01

Collision orogens have a complex structure, including diverse rock units assembled in various ways by geodynamic processes. Consequently, orogenic detritus embraces a varied range of signatures, and unravelling provenance of clastic wedges accumulated in adjacent foreland basins, foredeeps, or remnant-ocean basins is an arduous task. Dickinson and Suczek (1979) and Dickinson (1985) recognized the intrinsically composite nature of orogenic detritus, but did not attempt to establish clear conceptual and operational distinctions within their broad "Recycled Orogenic Provenance". In the Alpine and Himalayan belts, the bulk of the detritus is produced by focused erosion of the central backbone of the orogen, characterized by high topography and exhumation rates (Garzanti et al., 2004; Najman, 2006). Detritus derived from such axial nappe pile, including slivers of thinned continental-margin lithosphere metamorphosed at depth during early collisional stages, has diagnostic general features, which allows us to define an "Axial Belt Provenance" (Garzanti et al., 2007). In detail, "Axial Belt" detrital signatures are influenced by metamorphic grade of source rocks and relative abundance of continental versus oceanic protoliths, typifying distinct subprovenances. Metasedimentary cover nappes shed lithic to quartzolithic detritus, including metapelite, metapsammite, and metacarbonate grains of various ranks; only amphibolite-facies metasediments supply abundant heavy minerals (e.g., almandine garnet, staurolite, kyanite, sillimanite, diopsidic clinopyroxene). Continental-basement nappes shed hornblende-rich quartzofeldspathic detritus. Largely retrogressed blueschist to eclogite-facies metaophiolites supply albite, metabasite and foliated antigorite-serpentinite grains, along with abundant heavy minerals (epidote, zoisite, clinozoisite, lawsonite, actinolitic to barroisitic amphiboles, glaucophane, omphacitic clinopyroxene). Increasing metamorphic grade and deeper

Petrogenesis of the NE Gondwanan uppermost Ediacaran-Lower Cretaceous siliciclastic sequence of Jordan: Provenance, tectonic, and climatic implications

NASA Astrophysics Data System (ADS)

Amireh, Belal S.

2018-04-01

Detrital framework modes of the NE Gondwanan uppermost Ediacaran-Lower Cretaceous siliciclastic sequence of Jordan are determined employing the routine polarized light microscope. The lower part of this sequence constitutes a segment of the vast lower Paleozoic siliciclastic sheet flanking the northern Gondwana margin that was deposited over a regional unconformity truncating the outskirts of the East African orogen in the aftermath of the Neoproterozoic amalgamation of Gondwana. The research aims to evaluate the factors governing the detrital light mineral composition of this sandstone. The provenance terranes of the Arabian craton controlled by plate tectonics appear to be the primary factor in most of the formations, which could be either directly inferred employing Dickinson's compositional triangles or implied utilizing the petrographic data achieved and the available tectonic and geological data. The Arabian-Nubian Shield constitutes invariably the craton interior or the transitional provenance terrane within the NE Gondwana continental block that consistently supplied sandy detritus through northward-flowing braided rivers to all the lower Paleozoic formations. On the other hand, the Lower Cretaceous Series received siliciclastic debris, through braided-meandering rivers having same northward dispersal direction, additionally from the lower Paleozoic and lower-middle Mesozoic platform strata in the Arabian Craton. The formations making about 50% of the siliciclastic sequence represent a success for Dickinson's plate tectonics-provenance approach in attributing the detrital framework components primarily to the plate tectonic setting of the provenance terranes. However, even under this success, the varying effects of the other secondary sedimentological and paleoclimatological factors are important and could be crucial. The inapplicability of this approach to infer the appropriate provenance terranes of the remaining formations could be ascribed either to the

Protru: Leveraging Provenance to Enhance Network Trust in a Wireless Sensor Network

ERIC Educational Resources Information Center

Dogan, Gulustan

2013-01-01

Trust can be an important component of wireless sensor networks for believability of the produced data and historical value is a crucial asset in deciding trust of the data. A node's trust can change over time after its initial deployment due to various reasons such as energy loss, environmental conditions or exhausting sources. Provenance can…

Assessing the role of detrital zircon sorting on provenance interpretations in an ancient fluvial system using paleohydraulics - Permian Cutler Group, Paradox Basin, Utah and Colorado

NASA Astrophysics Data System (ADS)

Findlay, C. P., III; Ewing, R. C.; Perez, N. D.

2017-12-01

Detrital zircon age signatures used in provenance studies are assumed to be representative of entire catchments from which the sediment was derived, but the extent to which hydraulic sorting can bias provenance interpretations is poorly constrained. Sediment and mineral sorting occurs with changes in hydraulic conditions driven by both allogenic and autogenic processes. Zircon is sorted from less dense minerals due to the difference in density, and any age dependence on zircon size could potentially bias provenance interpretations. In this study, a coupled paleohydraulic and geochemical provenance approach is used to identify changes in paleohydraulic conditions and relate them to spatial variations in provenance signatures from samples collected along an approximately time-correlative source-to-sink pathway in the Permian Cutler Group of the Paradox Basin. Samples proximal to the uplift have a paleoflow direction to the southwest. In the medial basin, paleocurrent direction indicates salt movement caused fluvial pathways divert to the north and northwest on the flanks of anticlines. Channel depth, flow velocity, and discharge calculations were derived from field measurements of grain size and dune and bar cross-stratification indicate that competency of the fluvial system decreased from proximal to the medial basin by up to a factor of 12. Based upon the paleohydraulic calculations, zircon size fractionation would occur along the transect such that the larger zircons are removed from the system prior to reaching the medial basin. Analysis of the size and age distribution of zircons from the proximal and distal fluvial system of the Cutler Group tests if this hydraulic sorting affects the expected Uncompahgre Uplift age distribution.

White oak growth after 23 Years in a three-site provenance/progeny trial on a latitudinal gradient in Indiana

Treesearch

Yen-Ning Huang; Hao Zhang; Scott Rogers; Mark Coggeshall; Keith Woeste

2015-01-01

To increase the availability of improved, adapted white oak (Quercus alba L.) for midwestern United States landowners, we analyzed data from three 23-year-old provenance/progeny tests of 70 open-pollinated progenies from 17 provenances. Our goal was to estimate the heritability of height growth and range of adaptation and ultimately to determine...

Leapfrogging of tree species provenances? Interaction of microclimate and genetics on upward shifts in tree species' range limits

NASA Astrophysics Data System (ADS)

Reinhardt, K.; Castanha, C.; Germino, M. J.; Kueppers, L. M.

2011-12-01

The elevation limit of tree growth (alpine treeline) is considered to be constrained by environmental (i.e., thermal) and genetic (i.e., inability to adapt to climatic conditions) limitations to growth. Warming conditions due to climate change are predicted to cause upward shifts in the elevation of alpine treelines, through relief of cold-induced physiological limitations on seedling recruitment beyond current treeline boundaries. To determine how genetics and climate may interact to affect seedling establishment, we transplanted recently germinated seedlings from high- and low-elevation provenances (HI and LO, respectively) of Pinus flexilis in common gardens arrayed along an elevation and canopy gradient from subalpine forest into the alpine zone at Niwot Ridge, CO. We compared differences in microclimate and seedling ecophysiology among sites and between provenances. During the first summer of growth, frequently cloudy skies resulted in similar solar radiation incidence and air and soil temperatures among sites, despite nearly a 500 m-span in elevation across all sites. Preliminary findings suggest that survival of seedlings was similar between the lowest and highest elevations, with greater survival of LO (60%) compared to HI (40%) seedlings at each of these sites. Photosynthesis, carbon balance (photosynthesis/respiration), and conductance increased more than 2X with elevation for both provenances, and were 35-77% greater in LO seedlings compared to HI seedlings. There were no differences in dark-adapted chlorophyll fluorescence (Fv/Fm) among sites or between provenances. However, in a common-garden study at low elevation, we observed no differences in carbon or water relations between two naturally-germinated mitochondrial haplotypes of P. flexilis (of narrow and wide-ranging distributions). We did observe water-related thresholds on seedling carbon balance and survival that occurred when soil volumetric water content dropped below 10% and seedling water

Translocations of amphibians: Proven management method or experimental technique

USGS Publications Warehouse

Seigel, Richard A.; Dodd, C. Kenneth

2002-01-01

In an otherwise excellent review of metapopulation dynamics in amphibians, Marsh and Trenham (2001) make the following provocative statements (emphasis added): If isolation effects occur primarily in highly disturbed habitats, species translocations may be necessary to promote local and regional population persistence. Because most amphibians lack parental care, they areprime candidates for egg and larval translocations. Indeed, translocations have already proven successful for several species of amphibians. Where populations are severely isolated, translocations into extinct subpopulations may be the best strategy to promote regional population persistence. We take issue with these statements for a number of reasons. First, the authors fail to cite much of the relevant literature on species translocations in general and for amphibians in particular. Second, to those unfamiliar with current research in amphibian conservation biology, these comments might suggest that translocations are a proven management method. This is not the case, at least in most instances where translocations have been evaluated for an appropriate period of time. Finally, the authors fail to point out some of the negative aspects of species translocation as a management method. We realize that Marsh and Trenham's paper was not concerned primarily with translocations. However, because Marsh and Trenham (2001) made specific recommendations for conservation planners and managers (many of whom are not herpetologists or may not be familiar with the pertinent literature on amphibians), we believe that it is essential to point out that not all amphibian biologists are as comfortable with translocations as these authors appear to be. We especially urge caution about advocating potentially unproven techniques without a thorough review of available options.

The incidence of biopsy-proven transformation in follicular lymphoma in the rituximab era. A retrospective analysis from the Czech Lymphoma Study Group (CLSG) database.

PubMed

Janikova, Andrea; Bortlicek, Zbynek; Campr, Vit; Kopalova, Natasa; Benesova, Katerina; Hamouzova, Michaela; Belada, David; Prochazka, Vit; Pytlik, Robert; Vokurka, Samuel; Pirnos, Jan; Duras, Juraj; Mocikova, Heidi; Mayer, Jiri; Trneny, Marek

2018-04-01

The aim of this study is to assess the incidence, risk factors, and outcome of biopsy-proven transformation in follicular lymphoma (FL) patients in the rituximab era. Transformation was analyzed in 1233 patients with initially diagnosed FL grades 1-3A, identified between 2002 and 2012 in the prospectively maintained Czech Lymphoma Study Group database. Only patients with histologically proven transformation (HT) were included. HT occurred in 58 cases at a median of 3.0 years from the initial FL diagnosis; the HT rate was 4% at 5 years. Transformation occurred most frequently at the first relapse (84% patients). Median OS from the HT was 2.5 years (95% CI 0.4-4.6) and 6-year OS with HT was shorter compared to all FLs (60 vs. 83.9%; 95% CI). A bulky tumor (≥ 10 cm), increased lactate dehydrogenase, age ≥ 60 years, and International Prognostic Index (intermediate/high risk), but not Follicular Lymphoma International Prognostic Index, were associated with transformation (p < 0.05). In the first line, 70% of patients received rituximab (including 36% rituximab maintenance), 57% CHOP-like regimens, and 2.6% of patients were treated with fludarabine-based therapy, whereas 11% of patients were watched only. The patients treated with R-CHOP in the first line (n = 591) showed the transformation rate at 5 years of 4.23% (95% CI 2.52-5.93); subsequent rituximab maintenance (n = 276) vs. observation (n = 153) was associated with a lower transformation rate (p.033; HR 3.29; CI 1.10-9.82). The transformation rate seems to be lower than in previous series, which may be influenced by broad use of rituximab, but prognosis of HT developed during therapy continues to be poor.

Phorbol esters seed content and distribution in Latin American provenances of Jatropha curcas L.: potential for biopesticide, food and feed.

PubMed

Bueso, Francisco; Sosa, Italo; Chun, Roldan; Pineda, Renan

2016-01-01

Jatropha curcas L. (Jatropha) is believed to have originated from Mexico and Central America. So far, characterization efforts have focused on Asia, Africa and Mexico. Non-toxic, low phorbol ester (PE) varieties have been found only in Mexico. Differences in PE content in seeds and its structural components, crude oil and cake from Jatropha provenances cultivated in Central and South America were evaluated. Seeds were dehulled, and kernels were separated into tegmen, cotyledons and embryo for PE quantitation by RP-HPLC. Crude oil and cake PE content was also measured. No phenotypic departures in seed size and structure were observed among Jatropha cultivated in Central and South America compared to provenances from Mexico, Asia and Africa. Cotyledons comprised 96.2-97.5 %, tegmen 1.6-2.4 % and embryo represented 0.9-1.4 % of dehulled kernel. Total PE content of all nine provenances categorized them as toxic. Significant differences in kernel PE content were observed among provenances from Mexico, Central and South America (P < 0.01), being Mexican the highest (7.6 mg/g) and Cabo Verde the lowest (2.57 mg/g). All accessions had >95 % of PEs concentrated in cotyledons, 0.5-3 % in the tegmen and 0.5-1 % in the embryo. Over 60 % of total PE in dehulled kernels accumulated in the crude oil, while 35-40 % remained in the cake after extraction. Low phenotypic variability in seed physical, structural traits and PE content was observed among provenances from Latin America. Very high-PE provenances with potential as biopesticide were found in Central America. No PE-free, edible Jatropha was found among provenances currently cultivated in Central America and Brazil that could be used for human consumption and feedstock. Furthermore, dehulled kernel structural parts as well as its crude oil and cake contained toxic PE levels.

The modern spectrum of biopsy-proven renal disease in Chinese diabetic patients-a retrospective descriptive study.

PubMed

Liu, Diankun; Huang, Ting; Chen, Nan; Xu, Gang; Zhang, Ping; Luo, Yang; Wang, Yongping; Lu, Tao; Wang, Long; Xiong, Mengqi; Geng, Jian; Nie, Sheng

2018-01-01

Renal biopsies performed in diabetic patients are increasing and becoming more complex. Comprehensive data on modern spectrum of biopsy-proven renal disease in Chinese diabetic patients are lacking. In a nationwide renal biopsy survey including 71,151 native biopsies from 2004 to 2014, diabetic patients were identified according to the clinical diagnosis from referral records. The clinical data were extracted from referral records and pathological reports. A total of 1,604 diabetic patients, including 61 patients with T1DM, were analyzed in this study. The median age is 51.39 ± 11.37 years. Male patients accounted for 58% of the population. We found that only 44.7% of diabetic patients had the isolated pathological diagnosis of diabetic nephropathy (DN), while 49.1% had non-diabetic renal disease (NDRD) alone, and 6.2% had NDRD superimposed on DN. Nephrotic syndrome ( n  = 824, 51.4%) was the most common clinical indication for renal biopsy. Among 887 patients with NDRD, membranous nephropathy ( n  = 357) was the leading diagnosis, followed by IgA nephropathy ( n  = 179). Hypertensive renal disease ( n  = 32), tubulointerstitial nephropathy ( n  = 27) and acute tubular necrosis ( n  = 16) accounted for 3.5%, 2.9%, 1.7% of the NDRD cases respectively. Nearly a half (49.2%) of patients with T1DM had NDRD. Over 55% diabetic patients with kidney disease were diagnosed as non-diabetic renal disease, among which MN and IgAN were the most common two pathological types.

Glomerular Immune Deposits Are Predictive of Poor Long-Term Outcome in Patients with Adult Biopsy-Proven Minimal Change Disease: A Cohort Study in Korea

PubMed Central

Lee, Sung Woo; YU, Mi-Yeon; Baek, Seon Ha; Ahn, Shin-Young; Kim, Sejoong; Na, Ki Young; Chae, Dong-Wan; Chin, Ho Jun

2016-01-01

Background and Objectives There has been little published information on risk factors for poor long-term outcome in adult biopsy-proven minimal change disease (MCD). Methods Data from sixty-three adult, biopsy-proven primary MCD patients treated at a tertiary university hospital between 2003 and 2013 were analyzed. Baseline clinical and pathologic factors were assessed for the associations with composite outcome of creatinine doubling, end stage renal disease, or all-cause mortality. Results During a median (interquartile) 5.0 (2.8–5.0) years, the composite outcome occurred in 11.1% (7/63) of patients. The rate of glomerular immune deposits was 23.8% (15/63). Patients with glomerular immune deposits showed a significantly lower urine protein creatinine ratio than those without deposits (P = 0.033). The rate of non-responders was significantly higher in patients with glomerular immune deposits than in those without deposits (P = 0.033). In patients with deposits, 26.7% (4/15) developed the composite outcome, while only 6.3% (3/48) developed the composite outcome among those without deposits (P = 0.049). In multivariate Cox proportional hazards regression analysis, the presence of glomerular immune deposits was the only factor associated with development of the composite outcome (hazard ratio: 2.310, 95% confidence interval: 1.031–98.579, P = 0.047). Conclusion Glomerular immune deposits were associated with increased risk of a composite outcome in adult MCD patients. The higher rate of non-responders in patients with deposits might be related to the poor outcome. Future study is needed. PMID:26799663

Geochemical provenance of Florida basement components

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heatherington, A.L.; Mueller, P.A.; Dallmeyer, R.D.

1993-03-01

The pre-Cretaceous basement of Florida is generally considered to be exotic with respect to Proterozoic Laurentia. Paleontologic and paleomagnetic evidence have suggested a Gondwanan provenance for the Floridan basement, as either a peri-Gondwanide terrane or as a rifted block of the West African craton. The report of generally similar lithologic sequences and a record of similar Ar-Ar cooling ages in some Floridan and West African lithologic units has led to very specific correlations between these units. U-Pb, Sm-Nd, and Rb-Sr geochronologic studies as well as isotopic and elemental abundance data have been used to evaluate the validity of these correlations.more » Results indicate: (1) geochemical similarities between volcanic rocks of northeastern Florida and a Pan-African metavolcanic sequence (Niokola-Koba group) exposed in Senegal; (2) an absence of a Grenvillian-age (i.e., Laurentian) component in zircons separated from a Paleozoic Suwanee basin sandstone; and (3) whole-rock Sm-Nd and U-Pb zircon evidence for an Archean ([approximately]3.0 Ga) component in the neo-Proterozoic Osceola granitoid(s). Although silicic rocks from throughout Florida have Nd model ages (T[sub DM]) that are predominantly Grenvillian (1.1--1.4 Ga), the absence of a Grenvillian component in zircons separated from granite and sandstone suggests that the model ages represent a mixture of older and younger components. Overall, the evidence for Birimian ([approximately]2.1 Ga) and Liberian ([approximately]3.0 Ga) age components in the Florida basement are consistent with its origin as a rifted block of cratonic Gondwana. In addition to demonstrating a strong affinity between the Florida basement and cratonic West Africa/northern South America, these data provide a basis for comparison with other circum-Atlantic terranes traditionally described as Avalonian/Cadomian, etc.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dolan, Sean Gregory; Berryman, Judy; Shackley, M. Steven

Eden projectile points associated with the Cody complex are underrepresented in the late Paleoindian record of the American Southwest. EDXRF analysis of an obsidian Eden point from a site in Sierra County, New Mexico demonstrates this artifact is from the Cerro del Medio (Valles Rhyolite) source in the Jemez Mountains. Lastly, we contextualize our results by examining variability in obsidian procurement practices beyond the Cody heartland in southcentral New Mexico.

Entity Linking Leveraging the GeoDeepDive Cyberinfrastructure and Managing Uncertainty with Provenance.

NASA Astrophysics Data System (ADS)

Maio, R.; Arko, R. A.; Lehnert, K.; Ji, P.

2017-12-01

Unlocking the full, rich, network of links between the scientific literature and the real world entities to which data correspond - such as field expeditions (cruises) on oceanographic research vessels and physical samples collected during those expeditions - remains a challenge for the geoscience community. Doing so would enable data reuse and integration on a broad scale; making it possible to inspect the network and discover, for example, all rock samples reported in the scientific literature found within 10 kilometers of an undersea volcano, and associated geochemical analyses. Such a capability could facilitate new scientific discoveries. The GeoDeepDive project provides negotiated access to 4.2+ million documents from scientific publishers, enabling text and document mining via a public API and cyberinfrastructure. We mined this corpus using entity linking techniques, which are inherently uncertain, and recorded provenance information about each link. This opens the entity linking methodology to scrutiny, and enables downstream applications to make informed assessments about the suitability of an entity link for consumption. A major challenge is how to model and disseminate the provenance information. We present results from entity linking between journal articles, research vessels and cruises, and physical samples from the Petrological Database (PetDB), and incorporate Linked Data resources such as cruises in the Rolling Deck to Repository (R2R) catalog where possible. Our work demonstrates the value and potential of the GeoDeepDive cyberinfrastructure in combination with Linked Data infrastructure provided by the EarthCube GeoLink project. We present a research workflow to capture provenance information that leverages the World Wide Web Consortium (W3C) recommendation PROV Ontology.

Enabling data-driven provenance in NetCDF, via OGC WPS operations. Climate Analysis services use case.

NASA Astrophysics Data System (ADS)

Mihajlovski, A.; Spinuso, A.; Plieger, M.; Som de Cerff, W.

2016-12-01

Modern Climate analysis platforms provide generic and standardized ways of accessing data and processing services. These are typically supported by a wide range of OGC formats and interfaces. However, the problem of instrumentally tracing the lineage of the transformations occurring on a dataset and its provenance remains an open challenge. It requires standard-driven and interoperable solutions to facilitate understanding, sharing of self-describing data products, fostering collaboration among peers. The CLIPC portal provided us real use case, where the need of an instrumented provenance management is fundamental. CLIPC provides a single point of access for scientific information on climate change. The data about the physical environment which is used to inform climate change policy and adaptation measures comes from several categories: satellite measurements, terrestrial observing systems, model projections and simulations and from re-analyses. This is made possible through the Copernicus Earth Observation Programme for Europe. With a backbone combining WPS and OPeNDAP services, CLIPC has two themes: 1. Harmonized access to climate datasets derived from models, observations and re-analyses 2. A climate impact tool kit to evaluate, rank and aggregate indicators The climate impact tool kit is realised with the orchestration of a number of WPS that ingest, normalize and combine NetCDF files. The WPS allowing this specific computation are hosted by the climate4impact portal, which is a more generic climate data-access and processing service. In this context, guaranteeing validation and reproducibility of results, is a clearly stated requirement to improve the quality of the results obtained by the combined analysis Two core contributions made, are the enabling of a provenance wrapper around WPS services and the enabling of provenance tracing within the NetCDF format, which adopts and extends the W3C's PROV model. To disseminate indicator data and create transformed

Associating uncertainty with datasets using Linked Data and allowing propagation via provenance chains

NASA Astrophysics Data System (ADS)

Car, Nicholas; Cox, Simon; Fitch, Peter

2015-04-01

With earth-science datasets increasingly being published to enable re-use in projects disassociated from the original data acquisition or generation, there is an urgent need for associated metadata to be connected, in order to guide their application. In particular, provenance traces should support the evaluation of data quality and reliability. However, while standards for describing provenance are emerging (e.g. PROV-O), these do not include the necessary statistical descriptors and confidence assessments. UncertML has a mature conceptual model that may be used to record uncertainty metadata. However, by itself UncertML does not support the representation of uncertainty of multi-part datasets, and provides no direct way of associating the uncertainty information - metadata in relation to a dataset - with dataset objects.We present a method to address both these issues by combining UncertML with PROV-O, and delivering resulting uncertainty-enriched provenance traces through the Linked Data API. UncertProv extends the PROV-O provenance ontology with an RDF formulation of the UncertML conceptual model elements, adds further elements to support uncertainty representation without a conceptual model and the integration of UncertML through links to documents. The Linked ID API provides a systematic way of navigating from dataset objects to their UncertProv metadata and back again. The Linked Data API's 'views' capability enables access to UncertML and non-UncertML uncertainty metadata representations for a dataset. With this approach, it is possible to access and navigate the uncertainty metadata associated with a published dataset using standard semantic web tools, such as SPARQL queries. Where the uncertainty data follows the UncertML model it can be automatically interpreted and may also support automatic uncertainty propagation . Repositories wishing to enable uncertainty propagation for all datasets must ensure that all elements that are associated with uncertainty

Scab susceptibility of a provenance collection of pecan in in the southeastern USA

USDA-ARS?s Scientific Manuscript database

Pecan scab is the most economically destructive disease of pecan in the Southeast US. It is spread in rain and is widespread in the Southeast where conditions conducive to epidemics. A provenance collection of pecan from 19 locations representing the native range of the tree is located in Byron, Geo...

ASDF: An Adaptable Seismic Data Format with Full Provenance

NASA Astrophysics Data System (ADS)

Smith, J. A.; Krischer, L.; Tromp, J.; Lefebvre, M. P.

2015-12-01

In order for seismologists to maximize their knowledge of how the Earth works, they must extract the maximum amount of useful information from all recorded seismic data available for their research. This requires assimilating large sets of waveform data, keeping track of vast amounts of metadata, using validated standards for quality control, and automating the workflow in a careful and efficient manner. In addition, there is a growing gap between CPU/GPU speeds and disk access speeds that leads to an I/O bottleneck in seismic workflows. This is made even worse by existing seismic data formats that were not designed for performance and are limited to a few fixed headers for storing metadata.The Adaptable Seismic Data Format (ASDF) is a new data format for seismology that solves the problems with existing seismic data formats and integrates full provenance into the definition. ASDF is a self-describing format that features parallel I/O using the parallel HDF5 library. This makes it a great choice for use on HPC clusters. The format integrates the standards QuakeML for seismic sources and StationXML for receivers. ASDF is suitable for storing earthquake data sets, where all waveforms for a single earthquake are stored in a one file, ambient noise cross-correlations, and adjoint sources. The format comes with a user-friendly Python reader and writer that gives seismologists access to a full set of Python tools for seismology. There is also a faster C/Fortran library for integrating ASDF into performance-focused numerical wave solvers, such as SPECFEM3D_GLOBE. Finally, a GUI tool designed for visually exploring the format exists that provides a flexible interface for both research and educational applications. ASDF is a new seismic data format that offers seismologists high-performance parallel processing, organized and validated contents, and full provenance tracking for automated seismological workflows.

Biomechanical differences in the stem straightening process among Pinus pinaster provenances. A new approach for early selection of stem straightness.

PubMed

Sierra-de-Grado, Rosario; Pando, Valentín; Martínez-Zurimendi, Pablo; Peñalvo, Alejandro; Báscones, Esther; Moulia, Bruno

2008-06-01

Stem straightness is an important selection trait in Pinus pinaster Ait. breeding programs. Despite the stability of stem straightness rankings in provenance trials, the efficiency of breeding programs based on a quantitative index of stem straightness remains low. An alternative approach is to analyze biomechanical processes that underlie stem form. The rationale for this selection method is that genetic differences in the biomechanical processes that maintain stem straightness in young plants will continue to control stem form throughout the life of the tree. We analyzed the components contributing most to genetic differences among provenances in stem straightening processes by kinetic analysis and with a biomechanical model defining the interactions between the variables involved (Fournier's model). This framework was tested on three P. pinaster provenances differing in adult stem straightness and growth. One-year-old plants were tilted at 45 degrees, and individual stem positions and sizes were recorded weekly for 5 months. We measured the radial extension of reaction wood and the anatomical features of wood cells in serial stem cross sections. The integral effect of reaction wood on stem leaning was computed with Fournier's model. Responses driven by both primary and secondary growth were involved in the stem straightening process, but secondary-growth-driven responses accounted for most differences among provenances. Plants from the straight-stemmed provenance showed a greater capacity for stem straightening than plants from the sinuous provenances mainly because of (1) more efficient reaction wood (higher maturation strains) and (2) more pronounced secondary-growth-driven autotropic decurving. These two process-based traits are thus good candidates for early selection of stem straightness, but additional tests on a greater number of genotypes over a longer period are required.

Epidemiology of biopsy-proven glomerulonephritis in Queensland adults.

PubMed

Jegatheesan, Dev; Nath, Karthik; Reyaldeen, Reza; Sivasuthan, Goutham; John, George T; Francis, Leo; Rajmokan, Mohana; Ranganathan, Dwarakanathan

2016-01-01

There is a paucity of data pertaining to the incidence of biopsy-proven glomerulonephritis (GN) in Australia. This retrospective study aims to review the data from all adult native renal biopsies performed in the state of Queensland from 2002 to 2011--comparing results with centres from across the world. Pathology reports of 3697 adult native kidney biopsies were reviewed, of which 2048 had GN diagnoses. Age, gender, clinical indication and histopathology findings were compared. The average age at biopsy was 48 ± 17 years. Male preponderance was noted overall (∼60%), with lupus nephritis being the only individual GN with female predilection. The average rate of biopsy was 12.04 per hundred thousand people per year (php/yr). Nephrotic and nephritic syndromes comprised approximately 75% of all clinical indications that lead to GN diagnoses. IgA nephropathy (1.41 php/yr) was the most common primary GN followed by focal segmental glomerulosclerosis (1.02 php/yr) and crescentic GN (0.73 php/yr). Diabetic nephropathy (0.84 php/yr), lupus nephritis (0.69 php/yr) and amyloidosis (0.19 php/yr) were the most commonly identified secondary GN. IgA nephropathy is the predominant primary GN in Queensland, and nephrotic syndrome the most common indication for a renal biopsy. While crescentic GN incidence has significantly increased with time, focal segmental glomerulosclerosis incidence has not shown any trend. Incidence of GN overall appears to increase with age. The annual rate of biopsy in this study appears lower than previously published in an Australian population. © 2015 Asian Pacific Society of Nephrology.

Geochemistry, environmental and provenance study of the Middle Miocene Leitha limestones (Central Paratethys)

NASA Astrophysics Data System (ADS)

Ali, Ahmed; Wagreich, Michael

2017-06-01

Mineralogical, major, minor, REE and trace element analyses of rock samples were performed on Middle Miocene limestones (Leitha limestones, Badenian) collected from four localities from Austria (Mannersdorf, Wöllersdorf, Kummer and Rosenberg quarries) and the Fertőrákos quarry in Hungary. Impure to pure limestones (i.e. limited by Al2O3 contents above or below 0.43 wt. %) were tested to evaluate the applicability of various geochemical proxies and indices in regard to provenance and palaeoenvironmental interpretations. Pure and impure limestones from Mannersdorf and Wöllersdorf (southern Vienna Basin) show signs of detrital input (REEs = 27.6 ± 9.8 ppm, Ce anomaly = 0.95 ± 0.1 and the presence of quartz, muscovite and clay minerals in impure limestones) and diagenetic influence (low contents of, e.g., Sr = 221 ± 49 ppm, Na is not detected, Ba = 15.6 ± 8.8 ppm in pure limestones). Thus, in both limestones the reconstruction of original sedimentary palaeoenvironments by geochemistry is hampered. The Kummer and Fertőrákos (Eisenstadt-Sopron Basin) comprise pure limestones (e.g., averages Sr = 571 ± 139 ppm, Na = 213 ± 56 ppm, Ba = 21 ± 4 ppm, REEs = 16 ± 3 ppm and Ce anomaly = 0.62 ± 0.05 and composed predominantly of calcite) exhibiting negligible diagenesis. Deposition under a shallow-water, well oxygenated to intermittent dysoxic marine environment can be reconstructed. Pure to impure limestones at Rosenberg-Retznei (Styrian Basin) are affected to some extent by detrital input and volcano-siliciclastic admixture. The Leitha limestones at Rosenberg have the least diagenetic influence among the studied localities (i.e. averages Sr = 1271 ± 261 ppm, Na = 315 ± 195 ppm, Ba = 32 ± 15 ppm, REEs = 9.8 ± 4.2 ppm and Ce anomaly = 0.77 ± 0.1 and consist of calcite, minor dolomite and quartz). The siliciclastic sources are characterized by immobile elemental ratios (i.e. La/Sc and Th/Co) which apply not only for the siliciclastics, but also for marls and

Variation in short-term and long-term responses of photosynthesis and isoprenoid-mediated photoprotection to soil water availability in four Douglas-fir provenances

DOE PAGES

Junker, Laura Verena; Kleiber, Anita; Jansen, Kirstin; ...

2017-01-10

For long-lived forest tree species, the understanding of intraspecific variation among populations and their response to water availability can reveal their ability to cope with and adapt to climate change. Dissipation of excess excitation energy, mediated by photoprotective isoprenoids, is an important defense mechanism against drought and high light when photosynthesis is hampered. We used 50-year-old Douglas-fir trees of four provenances at two common garden experiments to characterize provenance-specific variation in photosynthesis and photoprotective mechanisms mediated by essential and non-essential isoprenoids in response to soil water availability and solar radiation. All provenances revealed uniform photoprotective responses to high solar radiation,more » including increased de-epoxidation of photoprotective xanthophyll cycle pigments and enhanced emission of volatile monoterpenes. In contrast, we observed differences between provenances in response to drought, where provenances sustaining higher CO2 assimilation rates also revealed increased water-use efficiency, carotenoid-chlorophyll ratios, pools of xanthophyll cycle pigments, β-carotene and stored monoterpenes. Our results demonstrate that local adaptation to contrasting habitats affected chlorophyll-carotenoid ratios, pool sizes of photoprotective xanthophylls, β-carotene, and stored volatile isoprenoids. We conclude that intraspecific variation in isoprenoid-mediated photoprotective mechanisms contributes to the adaptive potential of Douglas-fir provenances to climate change.« less

Variation in short-term and long-term responses of photosynthesis and isoprenoid-mediated photoprotection to soil water availability in four Douglas-fir provenances

DOE Office of Scientific and Technical Information (OSTI.GOV)

Junker, Laura Verena; Kleiber, Anita; Jansen, Kirstin

For long-lived forest tree species, the understanding of intraspecific variation among populations and their response to water availability can reveal their ability to cope with and adapt to climate change. Dissipation of excess excitation energy, mediated by photoprotective isoprenoids, is an important defense mechanism against drought and high light when photosynthesis is hampered. We used 50-year-old Douglas-fir trees of four provenances at two common garden experiments to characterize provenance-specific variation in photosynthesis and photoprotective mechanisms mediated by essential and non-essential isoprenoids in response to soil water availability and solar radiation. All provenances revealed uniform photoprotective responses to high solar radiation,more » including increased de-epoxidation of photoprotective xanthophyll cycle pigments and enhanced emission of volatile monoterpenes. In contrast, we observed differences between provenances in response to drought, where provenances sustaining higher CO2 assimilation rates also revealed increased water-use efficiency, carotenoid-chlorophyll ratios, pools of xanthophyll cycle pigments, β-carotene and stored monoterpenes. Our results demonstrate that local adaptation to contrasting habitats affected chlorophyll-carotenoid ratios, pool sizes of photoprotective xanthophylls, β-carotene, and stored volatile isoprenoids. We conclude that intraspecific variation in isoprenoid-mediated photoprotective mechanisms contributes to the adaptive potential of Douglas-fir provenances to climate change.« less

Variation in short-term and long-term responses of photosynthesis and isoprenoid-mediated photoprotection to soil water availability in four Douglas-fir provenances

PubMed Central

Junker, Laura Verena; Kleiber, Anita; Jansen, Kirstin; Wildhagen, Henning; Hess, Moritz; Kayler, Zachary; Kammerer, Bernd; Schnitzler, Jörg-Peter; Kreuzwieser, Jürgen; Gessler, Arthur; Ensminger, Ingo

2017-01-01

For long-lived forest tree species, the understanding of intraspecific variation among populations and their response to water availability can reveal their ability to cope with and adapt to climate change. Dissipation of excess excitation energy, mediated by photoprotective isoprenoids, is an important defense mechanism against drought and high light when photosynthesis is hampered. We used 50-year-old Douglas-fir trees of four provenances at two common garden experiments to characterize provenance-specific variation in photosynthesis and photoprotective mechanisms mediated by essential and non-essential isoprenoids in response to soil water availability and solar radiation. All provenances revealed uniform photoprotective responses to high solar radiation, including increased de-epoxidation of photoprotective xanthophyll cycle pigments and enhanced emission of volatile monoterpenes. In contrast, we observed differences between provenances in response to drought, where provenances sustaining higher CO2 assimilation rates also revealed increased water-use efficiency, carotenoid-chlorophyll ratios, pools of xanthophyll cycle pigments, β-carotene and stored monoterpenes. Our results demonstrate that local adaptation to contrasting habitats affected chlorophyll-carotenoid ratios, pool sizes of photoprotective xanthophylls, β-carotene, and stored volatile isoprenoids. We conclude that intraspecific variation in isoprenoid-mediated photoprotective mechanisms contributes to the adaptive potential of Douglas-fir provenances to climate change. PMID:28071755

Taxonomic revision and stratigraphic provenance of 'Histiophorus rotundu' Woodward 1901 (Teleostei, Perciformes)

USGS Publications Warehouse

Monsch, K.A.; Fierstine, H.L.; Weems, R.E.

2005-01-01

Until recently, Histiophorus rotundus Woodward 1901, was known from a single, poorly preserved rostrum from the Tertiary phosphate beds near Charleston, South Carolina, an area from which many fossils have been described. The specimen is relatively featureless externally; its internal anatomy is unknown and the documentation of its geological provenance was poor. In an earlier revision the species was transferred to the fossil billfish genus Xiphiorhynchus Van Beneden, 1871. Here we confirm this designation, supported by new morphological studies of the holotype, recently found specimens of Xiphiorhynchus rotundus (Woodward, 1901), and the stratigraphic record of Xiphiorhynchus. The systematic paleontology we present is a contribution to the taxonomic revision of billfishes world-wide. Because the holotype is heavily phosphatized and the type locality was vaguely described, we discuss the geology of the phosphate mining districts of the Charleston region. Based on our studies, we can narrow the possible age of the holotype to late Oligocene or early Miocene. We suggest X. rotundus was extinct by the Burdigalian. 

Stratigraphy and sediment provenance of the Karoo Supergroup in Southern Botswana using geochemical indicators

NASA Astrophysics Data System (ADS)

Diskin, Sorcha; Wendorff, Marek; Lasarwe, Reneilwe

2010-05-01

The Karoo Supergroup of Botswana unconformably overlies Archaean and Proterozoic rocks. They are however, poorly exposed being in turn overlain by up to 200m of Kalahari Beds. This Carboniferous - Jurassic succession comprises sequences of sedimentary and volcanic rocks which are spread across southern Africa. In Botswana, rock complexes have been correlated between widely spaced boreholes based on macroscopically similar appearance and similar position in the succession. In neighbouring South Africa and Namibia these rocks are well exposed and the lithostratigraphy is well constrained by the fossil record. The Karoo units of Botswana have been correlated with these more precisely defined successions on the basis of lithostratigraphy only and are unsupported by other criteria and as such are limited; especially considering the different depositional settings between Botswana and South Africa. Here we present the results of a study of the heavy whole rock geochemistry in an attempt to provide additional, chemostratigraphic criteria for the lower and middle part of the Karoo suite, the Dwyka and Ecca Groups. Analysis of 60 samples for major and trace (including REE) element composition shows a close relation between the geochemical characteristics and stratigraphy. Major elements show that the deltaic material of the Kweneng Formation and Boritse Formation was sourced from recycled continental crust. The basinal mudstone and siltstone below and above fall into an intermediate-mafic igneous field. Most samples have distinct negative europium anomalies (Eu/Eu*=0.49-1.27; av. = 0. 75) and most values are characteristic of sediments of cratonic derivation. A clear shift in (Gd/Yb)N in the basinal pro-delta shales (the Bori Formation) is generally 2.0 or greater, which is typical of an Archean signature, whereas post-Archean rocks usually have (Gd/Yb)N 1.0 - 2.0 as seen for the strata above the delta mouth bars and channels (average 1.6). In a diagram in which (La

Provenance, tectonic setting and source-area weathering of the lower Cambrian sediments of the Parahio valley in the Spiti basin, India

NASA Astrophysics Data System (ADS)

Pandey, Shivani; Parcha, Suraj K.

2017-03-01

The geochemical study of siliciclastic rocks from the Lower Cambrian of Parahio Valley has been studied to describe the provenance, chemical weathering and tectonic setting. The K2O/Al2O3 ratio and positive correlation of Co ( r=0.85), Ni ( r=0.86), Zn ( r=0.82), Rb ( r=0.98) with K2O reflects that the presence of clay minerals control the abundances of these elements and suggests a warm and humid climate for this region. The chondrite normalized REE pattern of the samples is equivalent to upper continental crust, which reflects enriched LREE and flat HREE with negative Eu anomaly. The tectonic setting discriminant diagram log[K2O/Na2O] vs. SiO2; [SiO2/Al2O3] vs. log[K2O/Na2O]; [SiO2/20] - [K2O+Na2O] - [TiO2+Fe2O3+MgO] indicates transitional tectonic setting from an active continental margin to a passive margin. The discriminant function plot indicates quartzose sedimentary provenance, and to some extent, the felsic igneous provenance, derived from weathered granite, gneissic terrain and/or from pre-existing sedimentary terrain. The CIA value indicates low to moderate degree of chemical weathering and the average ICV values suggests immature sediments deposited in tectonically active settings. The A-CN-K diagram indicates that these sediments were generated from source rocks of the upper continental crust.

Clay mineralogy indicates the muddy sediment provenance in the estuarine-inner shelf of the East China Sea

NASA Astrophysics Data System (ADS)

Zhao, Yifei; Zou, Xinqing; Liu, Qing; Wang, Chenglong; Ge, Chendong; Xu, Min

2018-02-01

The estuarine-inner shelf mud regions of the East China Sea (ECS) are valuable for studying the source-to-sink processes of fluvial sediments deposited since the Holocene. In this study, we present evidence of the provenance and environmental evolution of two cores (S5-2 and JC07) from the estuarine-inner shelf regions of the ECS over the past 100 years based on 210Pb dating, high-resolution grain size measurements and clay mineral analyses. The results indicate that the clay mineral assemblages of cores S5-2 and JC07 are dominated by illite, followed by kaolinite and chlorite, and present scarce amounts of smectite. A comparison of these clay mineral assemblages with several major sources reveals that the fine sediments on the estuarine-inner shelf of the ECS represent a mixture of provenances associated with the Yangtze and Yellow Rivers, as well as smaller rivers. However, the contribution of each provenance has varied greatly over the past hundred years, as indicated by the down-core variability due to strong sediment reworking and transport on the inner shelf and the reduction of the sediment load from the Yangtze River basin. In the mud region of the Yangtze River estuary, the sediment from 1930 to 1956 was primarily derived from the Yangtze River, although the Yellow River was also an important influence. From 1956 to 2013, the Yellow River contribution decreased, whereas the Yangtze River contribution correspondingly increased. In the Zhe-Min mud region, the Yangtze River contributed more sediment than did other rivers from 1910 to 1950; however, the Yangtze River contribution gradually decreased from 1950 to 2013. Moreover, the other small rivers accounted for minor contributions, and the East Asian winter monsoon (EAWM) played an important role in the sediment transport process in the ECS. Our results indicate that the weakening/strengthening of the EAWM and a decrease in the sediment load of the Yangtze River influenced the transport and fate of sediment

Dynamic Data Citation through Provenance - new approach for reproducible science in Geoscience Australia.

NASA Astrophysics Data System (ADS)

Bastrakova, I.; Car, N.

2017-12-01

Geoscience Australia (GA) is recognised and respected as the National Repository and steward of multiple nationally significance data collections that provides geoscience information, services and capability to the Australian Government, industry and stakeholders. Internally, this brings a challenge of managing large volume (11 PB) of diverse and highly complex data distributed through a significant number of catalogues, applications, portals, virtual laboratories, and direct downloads from multiple locations. Externally, GA is facing constant changer in the Government regulations (e.g. open data and archival laws), growing stakeholder demands for high quality and near real-time delivery of data and products, and rapid technological advances enabling dynamic data access. Traditional approach to citing static data and products cannot satisfy increasing demands for the results from scientific workflows, or items within the workflows to be open, discoverable, thrusted and reproducible. Thus, citation of data, products, codes and applications through the implementation of provenance records is being implemented. This approach involves capturing the provenance of many GA processes according to a standardised data model and storing it, as well as metadata for the elements it references, in a searchable set of systems. This provides GA with ability to cite workflows unambiguously as well as each item within each workflow, including inputs and outputs and many other registered components. Dynamic objects can therefore be referenced flexibly in relation to their generation process - a dataset's metadata indicates where to obtain its provenance from - meaning the relevant facts of its dynamism need not be crammed into a single citation object with a single set of attributes. This allows for simple citations, similar to traditional static document citations such as references in journals, to be used for complex dynamic data and other objects such as software code.

ProvenCare perinatal: a model for delivering evidence/ guideline-based care for perinatal populations.

PubMed

Berry, Scott A; Laam, Leslie A; Wary, Andrea A; Mateer, Harry O; Cassagnol, Hans P; McKinley, Karen E; Nolan, Ruth A

2011-05-01

Geisinger Health System (GHS) has applied its ProvenCare model to demonstrate that a large integrated health care delivery system, enabled by an electronic health record (EHR), could reengineer a complicated clinical process, reduce unwarranted variation, and provide evidence-based care for patients with a specified clinical condition. In 2007 GHS began to apply the model to a more complicated, longer-term condition of "wellness"--perinatal care. ADAPTING PROVENCARE TO PERINATAL CARE: The ProvenCare Perinatal initiative was more complex than the five previous ProvenCare endeavors in terms of breadth, scope, and duration. Each of the 22 sites created a process flow map to depict the current, real-time process at each location. The local practice site providers-physicians and mid-level practitioners-reached consensus on 103 unique best practice measures (BPMs), which would be tracked for every patient. These maps were then used to create a single standardized pathway that included the BPMs but also preserved some unique care offerings that reflected the needs of the local context. A nine-phase methodology, expanded from the previous six-phase model, was implemented on schedule. Pre- to postimplementation improvement occurred for all seven BPMs or BPM bundles that were considered the most clinically relevant, with five statistically significant. In addition, the rate of primary cesarean sections decreased by 32%, and birth trauma remained unchanged as the number of vaginal births increased. Preliminary experience suggests that integrating evidence/guideline-based best practices into work flows in inpatient and outpatient settings can achieve improvements in daily patient care processes and outcomes.

Data Provenance Architecture for the Geosciences

NASA Astrophysics Data System (ADS)

Murphy, F.; Irving, D. H.

2012-12-01

The pace at which geoscientific insights inform societal development quickens with time and these insights drive decisions and actions of ever-increasing human and economic significance. Until recently academic, commercial and government bodies have maintained distinct bodies of knowledge to support scientific enquiry as well as societal development. However, it has become clear that the curation of the body of data is an activity of equal or higher social and commercial value. We address the community challenges in the curation of, access to, and analysis of scientific data including: the tensions between creators, providers and users; incentives and barriers to sharing; ownership and crediting. We also discuss the technical and financial challenges in maximising the return on the effort made in generating geoscientific data. To illustrate how these challenges might be addressed in the broader geoscientific domain, we describe the high-level data governance and analytical architecture in the upstream Oil Industry. This domain is heavily dependent on costly and highly diverse geodatasets collected and assimilated over timeframes varying from seconds to decades. These data must support both operational decisions at the minute-hour timefame and strategic and economic decisions of enterprise or national scale, and yet be sufficiently robust to last the life of a producing field. We develop three themes around data provenance, data ownership and business models for data curation. 1/ The overarching aspiration is to ensure that data provenance and quality is maintained along the analytical workflow. Hence if data on which a publication or report changes, the report and its publishers can be notified and we describe a mechanism by which dependent knowledge products can be flagged. 2/ From a cost and management point of view we look at who "owns" data especially in cases where the cost of curation and stewardship is significant compared to the cost of acquiring the data

Radial Growth of Nine Selected 18-Year-Old Baldcypress Provenances Under Prolonged Drought

Treesearch

P. Joy Young; Jim L. Chambers

2004-01-01

Coastal and bottomland restoration have prompted an interest in species that tolerate wetland and/or saline conditions. It has been suggested that provenance tests may be used to explore a species’ response to global climate change (Matyas 1994). Baldcypress, [Taxodium distichum (L.) Rich], a canopy dominant in the lower Atlantic and Gulf coast...

Impact of rhizobial inoculation on Acacia senegal (L.) Willd. growth in greenhouse and soil functioning in relation to seed provenance and soil origin.

PubMed

Bakhoum, Niokhor; Ndoye, Fatou; Kane, Aboubacry; Assigbetse, Komi; Fall, Dioumacor; Sylla, Samba Ndao; Noba, Kandioura; Diouf, Diégane

2012-07-01

Rhizobial inoculation has a positive impact on plants growth; however, there is little information about its effect on soil microbial communities and their activity in the rhizosphere. It was therefore necessary to test the effect of inoculation of Acacia senegal (L.) Willd. seedlings with selected rhizobia on plant growth, structure and diversity of soil bacterial communities and soil functioning in relation to plant provenance and soil origin. In order to carry out this experiment, three A. senegal seeds provenance from Kenya, Niger, and Senegal were inoculated with selected rhizobial strains. They have been further grown during 4 months in greenhouse conditions in two non-disinfected soils, Dahra and Goudiry coming respectively from arid and semi-arid areas. The principal component analysis (ACP) showed an inoculation effect on plant growth, rhizospheric bacterial diversity and soil functioning. However, the performances of the rhizobial strains varied in relation to the seed provenance and the soil origin. The selected rhizobial strains, the A. senegal provenance and the soil origin have modified the structure and the diversity of soil bacterial communities as measured by principal component analysis/denaturing gradient gel electrophoresis analyses. It is interesting to note that bacterial communities of Dahra soil were highly structured according to A. senegal provenance, whereas they were structured in relation to rhizobial inoculation in Goudiry soil. Besides, the impact of inoculation on soil microbial activities measured by fluorescein diacetate analyses varied in relation to plant provenance and soil origin. Nevertheless, total microbial activity was about two times higher in Goudiry, arid soil than in Dahra, semi-arid soil. Our results suggest that the rhizobial inoculation is a suitable tool for improving plants growth and soil fertility. Yet, the impact is dependent on inoculants, plant provenance and soil origin. It will, therefore, be crucial to

Vertical Structural Variation and Their Development of the Sanukayama Rhyolite Lava in Kozushima Island, Japan

NASA Astrophysics Data System (ADS)

Furukawa, K.; Uno, K.; Kanamaru, T.; Nakai, K.

2017-12-01

We revealed structural development of the Pleistocene Sanukayama rhyolite lava of Kozushima Island, Japan. The good exposure, with about 130 m thick, provides valuable opportunity to understand the vertical structural variation. This exposure corresponds to the upper half of the lava. The paleomagnetic results show that the lava emplaced in subaerial condition at least in the exposed part. The vertical lithofacies are divided into the pumiceous (25-40 m thick), obsidian (40-60 m), spherulitic (30-50 m) layers from top to base. The pumiceous layer is characterized by massive foliated pumice. The foliation dips are gradually changed from gentle (10-30°) in lower part to steep (around 90°) in upper part. This shows the balloon-like morphology. The massive pumiceous layer would be generated from late stage diapiric inflation of the lava (Fink and Manley, 1987). The obsidian layer is composed of massive and welded-brecciated parts. The ductile-deformed light-colored veins, with a few mm thick, are frequently developed. In the microscopic observation, the veins are composed of broken crystals and obsidian clasts indicating fracturing of the lava followed by ductile deformation such as the RFH process (Tuffen et al., 2003). In this layer, extensive vesiculation and microlite development must have been prevented by higher load pressure and faster cooling, respectively. Consequently, they resulted in formation of the obsidian. The spherulitic layer is characterized by development of the ductile-deformed flow banding. The microscopic observation shows that the bands are formed by the spherulite trail. Furthermore, the microlites are aligned within the spherulites. In the heat-retained inner part of the lava, microlites would be developed around the healed fractures. The microlites acted as nucleation site of spherulite. In transition layer between obsidian and spherulitic layers (<10 m thick), the fragments of spherulitic rhyolite are entrained within the obsidian layer

Intraspecific Variation in Wood Anatomical, Hydraulic, and Foliar Traits in Ten European Beech Provenances Differing in Growth Yield

PubMed Central

Hajek, Peter; Kurjak, Daniel; von Wühlisch, Georg; Delzon, Sylvain; Schuldt, Bernhard

2016-01-01

In angiosperms, many studies have described the inter-specific variability of hydraulic-related traits and little is known at the intra-specific level. This information is however mandatory to assess the adaptive capacities of tree populations in the context of increasing drought frequency and severity. Ten 20-year old European beech (Fagus sylvatica L.) provenances representing the entire distribution range throughout Europe and differing significantly in aboveground biomass increment (ABI) by a factor of up to four were investigated for branch wood anatomical, hydraulic, and foliar traits in a provenance trial located in Northern Europe. We quantified to which extend xylem hydraulic and leaf traits are under genetic control and tested whether the xylem hydraulic properties (hydraulic efficiency and safety) trades off with yield and wood anatomical and leaf traits. Our results showed that only three out of 22 investigated ecophysiological traits showed significant genetic differentiations between provenances, namely vessel density (VD), the xylem pressure causing 88% loss of hydraulic conductance and mean leaf size. Depending of the ecophysiological traits measured, genetic differentiation between populations explained 0–14% of total phenotypic variation, while intra-population variability was higher than inter-population variability. Most wood anatomical traits and some foliar traits were additionally related to the climate of provenance origin. The lumen to sapwood area ratio, vessel diameter, theoretical specific conductivity and theoretical leaf-specific conductivity as well as the C:N-ratio increased with climatic aridity at the place of origin while the carbon isotope signature (δ13C) decreased. Contrary to our assumption, none of the wood anatomical traits were related to embolism resistance but were strong determinants of hydraulic efficiency. Although ABI was associated with both VD and δ13C, both hydraulic efficiency and embolism resistance were

Intraspecific Variation in Wood Anatomical, Hydraulic, and Foliar Traits in Ten European Beech Provenances Differing in Growth Yield.

PubMed

Hajek, Peter; Kurjak, Daniel; von Wühlisch, Georg; Delzon, Sylvain; Schuldt, Bernhard

2016-01-01

In angiosperms, many studies have described the inter-specific variability of hydraulic-related traits and little is known at the intra-specific level. This information is however mandatory to assess the adaptive capacities of tree populations in the context of increasing drought frequency and severity. Ten 20-year old European beech (Fagus sylvatica L.) provenances representing the entire distribution range throughout Europe and differing significantly in aboveground biomass increment (ABI) by a factor of up to four were investigated for branch wood anatomical, hydraulic, and foliar traits in a provenance trial located in Northern Europe. We quantified to which extend xylem hydraulic and leaf traits are under genetic control and tested whether the xylem hydraulic properties (hydraulic efficiency and safety) trades off with yield and wood anatomical and leaf traits. Our results showed that only three out of 22 investigated ecophysiological traits showed significant genetic differentiations between provenances, namely vessel density (VD), the xylem pressure causing 88% loss of hydraulic conductance and mean leaf size. Depending of the ecophysiological traits measured, genetic differentiation between populations explained 0-14% of total phenotypic variation, while intra-population variability was higher than inter-population variability. Most wood anatomical traits and some foliar traits were additionally related to the climate of provenance origin. The lumen to sapwood area ratio, vessel diameter, theoretical specific conductivity and theoretical leaf-specific conductivity as well as the C:N-ratio increased with climatic aridity at the place of origin while the carbon isotope signature (δ(13)C) decreased. Contrary to our assumption, none of the wood anatomical traits were related to embolism resistance but were strong determinants of hydraulic efficiency. Although ABI was associated with both VD and δ(13)C, both hydraulic efficiency and embolism resistance were

Using pebble lithology and roundness to interpret gravel provenance in piedmont fluvial systems of the Rocky Mountains, USA

USGS Publications Warehouse

Lindsey, D.A.; Langer, W.H.; Van Gosen, B. S.

2007-01-01

Clast populations in piedmont fluvial systems are products of complex histories that complicate provenance interpretation. Although pebble counts of lithology are widely used, the information provided by a pebble count has been filtered by a potentially large number of processes and circumstances. Counts of pebble lithology and roundness together offer more power than lithology alone for the interpretation of provenance. In this study we analyze pebble counts of lithology and roundness in two contrasting fluvial systems of Pleistocene age to see how provenance varies with drainage size. The two systems are 1) a group of small high-gradient incised streams that formed alluvial fans and terraces and 2) a piedmont river that formed terraces in response to climate-driven cycles of aggradation and incision. We first analyze the data from these systems within their geographic and geologic context. After this is done, we employ contingency table analysis to complete the interpretation of pebble provenance. Small tributary streams that drain rugged mountains on both sides of the Santa Cruz River, southeast Arizona, deposited gravel in fan and terrace deposits of Pleistocene age. Volcanic, plutonic and, to a lesser extent, sedimentary rocks are the predominant pebble lithologies. Large contrasts in gravel lithology are evident among adjacent fans. Subangular to subrounded pebbles predominate. Contingency table analysis shows that hard volcanic rocks tend to remain angular and, even though transport distances have been short, soft tuff and sedimentary rocks tend to become rounded. The Wind River, a major piedmont stream in Wyoming, drains rugged mountains surrounding the northwest part of the Wind River basin. Under the influence of climate change and glaciation during the Pleistocene, the river deposited an extensive series of terrace gravels. In contrast to Santa Cruz tributary gravel, most of the Wind River gravel is relatively homogenous in lithology and is rounded to

Provenance-aware optimization of workload for distributed data production

NASA Astrophysics Data System (ADS)

Makatun, Dzmitry; Lauret, Jérôme; Rudová, Hana; Šumbera, Michal

2017-10-01

Distributed data processing in High Energy and Nuclear Physics (HENP) is a prominent example of big data analysis. Having petabytes of data being processed at tens of computational sites with thousands of CPUs, standard job scheduling approaches either do not address well the problem complexity or are dedicated to one specific aspect of the problem only (CPU, network or storage). Previously we have developed a new job scheduling approach dedicated to distributed data production - an essential part of data processing in HENP (preprocessing in big data terminology). In this contribution, we discuss the load balancing with multiple data sources and data replication, present recent improvements made to our planner and provide results of simulations which demonstrate the advantage against standard scheduling policies for the new use case. Multi-source or provenance is common in computing models of many applications whereas the data may be copied to several destinations. The initial input data set would hence be already partially replicated to multiple locations and the task of the scheduler is to maximize overall computational throughput considering possible data movements and CPU allocation. The studies have shown that our approach can provide a significant gain in overall computational performance in a wide scope of simulations considering realistic size of computational Grid and various input data distribution.

ACSM Fitness Book: A Proven Step-By-Step Program from the Experts. Third Edition.

ERIC Educational Resources Information Center

American Coll. of Sports Medicine, Indianapolis, IN.

This offers advice on the health benefits of regular physical activity. It includes a scientifically proven fitness test to determine one's starting point and monitor ongoing progress, offering step-by-step instructions, sample programs, and insights on nutrition, weight control, motivation, and overcoming setbacks. Seven chapters examine: (1)…

Culture-proven early-onset neonatal sepsis in Arab states in the Gulf region: two-year prospective study.

PubMed

Hammoud, Majeda S; Al-Taiar, Abdullah; Al-Abdi, Sameer Y; Bozaid, Hussain; Khan, Anwar; AlMuhairi, Laila M; Rehman, Moghis Ur

2017-02-01

To investigate the incidence and the pattern of causative organisms of culture-proven early-onset sepsis (EOS) in Arab states in the Gulf region. Five neonatal care units participated in this 2-year prospective study in Kuwait, the United Arab Emirates, and Saudi Arabia. Data were collected prospectively using a standardized data collection form. EOS was defined as the growth of a single potentially pathogenic organism from blood or cerebrospinal fluid in infants within 72h of birth, with clinical and laboratory findings consistent with infection. Out of 67 474 live births, 102 cases of EOS occurred. The overall incidence of EOS was 1.5 (95% confidence interval 1.2-1.8) per 1000 live-births, ranging from 2.64 per 1000 live-births in Kuwait to 0.40 per 1000 live-births in King Abdulaziz Hospital in Saudi Arabia. The most common causative organism of EOS was group B Streptococcus (GBS; 60.0%), followed by Escherichia coli (13%). The incidence of invasive GBS disease was 0.90 per 1000 live-births overall and ranged from 1.4 per 1000 live-births in Kuwait to 0.6 per 1000 live-births in Dubai Hospital. The incidence of EOS and the patterns of the causative organisms in the Arab states in the Gulf region are similar to those in developed countries before the era of intrapartum antibiotic prophylaxis. Efforts should be made to improve intrapartum antibiotic prophylaxis in the Arab state setting, which could avert large numbers of GBS infections. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

Insights into the Geographic Sequence of Deglaciation in the Weddell Sea Embayment by Provenance of Ice-Rafted Debris

NASA Astrophysics Data System (ADS)

Williams, T.; Hemming, S. R.; Licht, K.; Agrios, L.; Brachfeld, S. A.; van de Flierdt, T.; Hillenbrand, C. D.; Ehrmann, W. U.; Zhai, X.; Cai, Y.; Corley, A. D.; Kuhn, G.

2017-12-01

The geochemical and geochronological fingerprint of rock debris eroded and carried by ice streams may be used to identify the provenance of iceberg-rafted debris (IRD) in the marine sediment record. During ice retreat following glacial maxima, it has been shown that there is an increase in IRD accumulation in marine sediments underlying the western limb of the Weddell Gyre. Here we present IRD provenance records from sediment core PS1571-1 in the NW Weddell Sea, and interpret these records in terms of the geographic sequence of ice sheet retreat in the Weddell Sea embayment during the most recent deglaciation. We first characterize the source areas of eroded debris around the Weddell Sea Embayment, using published mapping of the embayment and new material from: 1. Till in modern moraines at the edges of ice streams, including the Foundation Ice Stream, the Academy Glacier, and the Recovery Glacier; and 2. Subglacial till and proximal glaciomarine sediment from existing cores located along the front of the Filchner and Ronne Ice Shelves, collected on past expeditions of the RV Polarstern. The analyses on these samples include 40Ar/39Ar hornblende and biotite thermochronology and U-Pb zircon geochronology on individual mineral grains, and K-Ar thermochronology, Nd isotopes, and clay mineralogy on the clay grain size fraction. Results so far indicate that samples along the front of the Filchner and Ronne Ice Shelves record the geochemical and geochronological fingerprint that would be expected from tracing ice flow lines back to the bedrock terranes. The Ronne (west), Hughes (central), and Filchner (east) sectors have distinguishable provenance source signatures, and further subdivision is possible. In core PS1571-1, downcore IRD provenance changes reflect iceberg output and ice sheet retreat from the different sectors of the embayment through the last deglaciation. The detrital provenance method of interpreting the geographic sequence of ice retreat can equally be

The provenance of Taklamakan desert sand

NASA Astrophysics Data System (ADS)

Rittner, Martin; Vermeesch, Pieter; Carter, Andrew; Bird, Anna; Stevens, Thomas; Garzanti, Eduardo; Andò, Sergio; Vezzoli, Giovanni; Dutt, Ripul; Xu, Zhiwei; Lu, Huayu

2016-03-01

Sand migration in the vast Taklamakan desert within the Tarim Basin (Xinjiang Uyghur Autonomous region, PR China) is governed by two competing transport agents: wind and water, which work in diametrically opposed directions. Net aeolian transport is from northeast to south, while fluvial transport occurs from the south to the north and then west to east at the northern rim, due to a gradual northward slope of the underlying topography. We here present the first comprehensive provenance study of Taklamakan desert sand with the aim to characterise the interplay of these two transport mechanisms and their roles in the formation of the sand sea, and to consider the potential of the Tarim Basin as a contributing source to the Chinese Loess Plateau (CLP). Our dataset comprises 39 aeolian and fluvial samples, which were characterised by detrital-zircon U-Pb geochronology, heavy-mineral, and bulk-petrography analyses. Although the inter-sample differences of all three datasets are subtle, a multivariate statistical analysis using multidimensional scaling (MDS) clearly shows that Tarim desert sand is most similar in composition to rivers draining the Kunlun Shan (south) and the Pamirs (west), and is distinctly different from sediment sources in the Tian Shan (north). A small set of samples from the Junggar Basin (north of the Tian Shan) yields different detrital compositions and age spectra than anywhere in the Tarim Basin, indicating that aeolian sediment exchange between the two basins is minimal. Although river transport dominates delivery of sand into the Tarim Basin, wind remobilises and reworks the sediment in the central sand sea. Characteristic signatures of main rivers can be traced from entrance into the basin to the terminus of the Tarim River, and those crossing the desert from the south to north can seasonally bypass sediment through the sand sea. Smaller ephemeral rivers from the Kunlun Shan end in the desert and discharge their sediment there. Both river run

Geoscience Academic Provenance: A Theoretical Framework for Understanding Geoscience Students' Pathways

NASA Astrophysics Data System (ADS)

Houlton, H.; Keane, C.

2012-04-01

The demand and employment opportunities for geoscientists in the United States are projected to increase 23% from 2008 to 2018 (Gonzales, 2011). Despite this trend, there is a disconnect between undergraduate geoscience students and their desire to pursue geoscience careers. A theoretical framework was developed to understand the reasons why students decide to major in the geosciences and map those decisions to their career aspirations (Houlton, 2010). A modified critical incident study was conducted to develop the pathway model from 17, one-hour long semi-structured interviews of undergraduate geoscience majors from two Midwest Research Institutions (Houlton, 2010). Geoscience Academic Provenance maps geoscience students' initial interests, entry points into the major, critical incidents and future career goals as a pathway, which elucidates the relationships between each of these components. Analyses identified three geoscience student population groups that followed distinct pathways: Natives, Immigrants and Refugees. A follow up study was conducted in 2011 to ascertain whether these students continued on their predicted pathways, and if not, reasons for attrition. Geoscientists can use this framework as a guide to inform future recruitment and retention initiatives and target these geoscience population groups for specific employment sectors.

Provenance In Sensor Data Management: A Cohesive, Independent Solution

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hensley, Zachary P; Sanyal, Jibonananda; New, Joshua Ryan

2014-01-01

In today's information-driven workplaces, data is constantly undergoing transformations and being moved around. The typical business-as-usual approach is to use email attachments, shared network locations, databases, and now, the cloud. More often than not, there are multiple versions of the data sitting in different locations and users of this data are confounded by the lack of metadata describing its provenance, or in other words, its lineage. Our project is aimed to solve this issue in the context of sensor data. The Oak Ridge National Laboratory's Building Technologies Research and Integration Center has reconfigurable commercial buildings deployed on the Flexible Researchmore » Platforms (FRPs). These FRPs are instrumented with a large number of sensors which measure a number of variables such as HVAC efficiency, relative humidity, and temperature gradients across doors, windows, and walls. Sub-minute resolution data from hundreds of channels is acquired. This sensor data, traditionally, was saved to a shared network location which was accessible to a number of scientists for performing complicated simulation and analysis tasks. The sensor data also participates in elaborate quality assurance exercises as a result of inherent faults. Sometimes, faults are induced to observe building behavior. It became apparent that proper scientific controls required not just managing the data acquisition and delivery, but to also manage the metadata associated with temporal subsets of the sensor data. We built a system named ProvDMS, or Provenance Data Management System for the FRPs, which would both allow researchers to retrieve data of interest as well as trace data lineage. This provides researchers a one-stop shop for comprehensive views of various data transformation allowing researchers to effectively trace their data to its source so that experiments, and derivations of experiments, may be reused and reproduced without much overhead of the repeatability of

Impact of fresh and saline water flooding on leaf gas exchange in two Italian provenances of Tamarix africana Poiret.

PubMed

Abou Jaoudé, R; de Dato, G; Palmegiani, M; De Angelis, P

2013-01-01

In Mediterranean coastal areas, changes in precipitation patterns and seawater levels are leading to increased frequency of flooding and to salinization of estuaries and freshwater systems. Tamarix spp. are often the only woody species growing in such environments. These species are known for their tolerance to moderate salinity; however, contrasting information exists regarding their tolerance to flooding, and the combination of the two stresses has never been studied in Tamarix spp. Here, we analyse the photosynthetic responses of T. africana Poiret to temporary flooding (45 days) with fresh or saline water (200 mm) in two Italian provenances (Simeto and Baratz). The measurements were conducted before and after the onset of flooding, to test the possible cumulative effects of the treatments and effects on twig aging, and to analyse the responses of twigs formed during the experimental period. Full tolerance was evident in T. africana with respect to flooding with fresh water, which did not affect photosynthetic performances in either provenance. Saline flooding was differently tolerated by the two provenances. Moreover, salinity tolerance differently affected the two twig generations. In particular, a reduction in net assimilation rate (-48.8%) was only observed in Baratz twigs formed during the experimental period, compared to pre-existing twigs. This reduction was a consequence of non-stomatal limitations (maximum carboxylation rate and electron transport), probably as a result of higher Na transport to the twigs, coupled with reduced Na storage in the roots. © 2012 German Botanical Society and The Royal Botanical Society of the Netherlands.

Local adaptations and climate change: converging sensitivity of bud break in black spruce provenances.

PubMed

Rossi, Sergio

2015-07-01

Species with transcontinental distribution or spread over wide geographical regions develop populations with growth traits genetically adapted to the local climate. The aim of this study was to investigate the ecotypic sensitivity of bud break, a strong adaptive trait, to a changing environment. Six phenological phases of bud break were monitored daily on black spruce [Picea mariana (Mill.) BSP] seedlings submitted to different temperatures (12, 16 and 20 °C) and photoperiods (14, 18 and 22 h). Six provenances were tested in growth chambers, produced from seeds collected along the whole latitudinal range of the closed boreal forest in Quebec, Canada. Bud break lasted 13.3 days on average and occurred earlier in seedlings from colder sites. The annual temperature of the sites suitably tracked the clinal variation among ecotypes, providing a clear biological explanation for the environmental signal driving the adaptive divergence of populations to the local climate. Increasing temperature induced an earlier bud break according to a non-linear pattern with greater advancements observed between 12 and 16 °C. Photoperiod was significant, but sensitivity analysis indicated that its effect on bud break was marginal with respect to temperature. No interaction of provenance × treatment was observed, demonstrating an ecotypic convergence of the responses to both factors. Changes in the growing conditions could substantially modify the synchronization between bud phenology and climate, thus exposing the developing meristems of black spruce to frost damage. However, similar advancements of bud break could be expected in the different ecotypes subjected to warmer temperatures or longer day lengths.

The 4Ps of Breast Cancer Chemoprevention: Putting Proven Principles into Practice

PubMed Central

Jordan, V. Craig

2017-01-01

The pioneering Royal Marsden Tamoxifen Prevention Trial, recruited 2471 eligible high risk women to be randomized to either placebo or tamoxifen (20mgs daily) for eight years. Breast cancer incidence was evaluated at a median of 18.4 years from the study start. There was a 32% reduction in estrogen/progesterone receptor (ER/PR) positive breast cancers after tamoxifen treatment finished. Translational research, to study “the good, the bad, and the ugly of tamoxifen” in the 1980’s subsequently ensured women’s safety from possible increases in osteoperosis, coronary heart disease, and endometrial cancer. Other tamoxifen chemoprevention trials followed. The result of laboratory research was the unanticipated discovery of raloxifene to prevent osteoporosis and breast cancer at the same time. A new group of medicines, now known as Selective ER Modulators (SERMs), was established. Indeed, the ability to prevent or delay multiple diseases with a single cheap medicine has the potential to alleviate pressure on healthcare systems that are overwhelmed. It is a priority to educate physicians appropriately to apply recommended proven medicines as preventives. PMID:28246081

A global renewable mix with proven technologies and common materials

NASA Astrophysics Data System (ADS)

Ballabrera, J.; Garcia-Olivares, A.; Garcia-Ladona, E.; Turiel, A.

2012-04-01

A global alternative mix to fossil fuels is proposed, based on proven renewable energy technologies that do not use scarce materials. Taking into account the availability of materials, the resulting mix consists of a combination of onshore and offshore wind turbines, concentrating solar power stations, hydroelectricity and wave power devices attached to the offshore turbines. Solar photovoltaic power could contribute to the mix if its dependence on scarce materials is solved. Material requirements are studied for the generation, power transport and for some future transport systems. The order of magnitude of copper, aluminium, neodymium, lithium, nickel, zinc and platinum that might be required for the proposed solution is obtained and compared with available reserves. While the proposed global alternative to fossil fuels seems technically feasible, lithium, nickel and platinum could become limiting materials for future vehicles fleet if no global recycling system were implemented and rechargeable zinc-air batteries could not be developed. As much as 60% of the current copper reserves would have to be employed in the implementation of the proposed solution. Altogether, the availability of materials may become a long-term physical constraint, preventing the continuation of the usual exponential growth of energy consumption.

A rare presentation of histologically proven sarcoidosis of the knee: A case report and brief review of the literature.

PubMed

Deschuyteneer, Evan; Rongé, R; Riffi, A; De Pierre, K; Vandenbroucke, F; Boulet, C; Goossens, A; Vincken, W

2017-06-01

We here report a patient with histologically proven sarcoidosis of the knee, a rare localization of sarcoidosis, which usually presents itself as a pulmonary disease. Case reports of radiological images that suggest osseous sarcoidosis of the appendicular skeleton are not so rare, however few are histologically proven. Since in our patient MRI could not distinguish between sarcoidosis and another (possibly malignant) disease, histological proof was obtained through a CT-guided biopsy. Imaging and treatment guidelines for extrapulmonary sarcoidosis are inexistent, due to lack of randomized trials.

Provenance of whitefish in the Gulf of Bothnia determined by elemental analysis of otolith cores

NASA Astrophysics Data System (ADS)

Lill, J.-O.; Finnäs, V.; Slotte, J. M. K.; Jokikokko, E.; Heimbrand, Y.; Hägerstrand, H.

2018-02-01

The strontium concentration in the core of otoliths was used to determine the provenance of whitefish found in the Gulf of Bothnia, Baltic Sea. To that end, a database of strontium concentration in fish otoliths representing different habitats (sea, river and fresh water) had to be built. Otoliths from juvenile whitefish were therefore collected from freshwater ponds at 5 hatcheries, from adult whitefish from 6 spawning sites at sea along the Finnish west coast, and from adult whitefish ascending to spawn in the Torne River, in total 67 otoliths. PIXE was applied to determine the elemental concentrations in these otoliths. While otoliths from the juveniles raised in the freshwater ponds showed low but varying strontium concentrations (194-1664 μg/g,), otoliths from sea-spawning fish showed high uniform strontium levels (3720-4333 μg/g). The otolith core analysis of whitefish from Torne River showed large variations in the strontium concentrations (1525-3650 μg/g). These otolith data form a database to be used for provenance studies of wild adult whitefish caught at sea. The applicability of the database was evaluated by analyzing the core of polished otoliths from 11 whitefish from a test site at sea in the Larsmo archipelago. Our results show that by analyzing strontium in the otolith core, we can differentiate between hatchery-origin and wild-origin whitefish, but not always between river and sea spawning whitefish.

Provenance tracking for scientific software toolchains through on-demand release and archiving

NASA Astrophysics Data System (ADS)

Ham, David

2017-04-01

There is an emerging consensus that published computational science results must be backed by a provenance chain tying results to the exact versions of input data and the code which generated them. There is also now an impressive range of web services devoted to revision control of software, and the archiving in citeable form of both software and input data. However, much scientific software itself builds on libraries and toolkits, and these themselves have dependencies. Further, it is common for cutting edge research to depend on the latest version of software in online repositories, rather than the official release version. This creates a situation in which an author who wishes to follow best practice in recording the provenance chain of their results must archive and cite unreleased versions of a series of dependencies. Here, we present an alternative which toolkit authors can easily implement to provide a semi-automatic mechanism for creating and archiving custom software releases of the precise version of a package used in a particular simulation. This approach leverages the excellent services provided by GitHub and Zenodo to generate a connected set of citeable DOIs for the archived software. We present the integration of this workflow into the Firedrake automated finite element framework as a practical example of this approach in use on a complex geoscientific tool chain in practical use.

Sediment characteristics and provenance of the Taiwan Shoal in the southern Taiwan Strait

NASA Astrophysics Data System (ADS)

Koo, W. S.; Lin, A. T.; Kuo, L. W.; Lee, Y. H.

2016-12-01

The Taiwan Shoal in the southern Taiwan Strait exhibits a lobe-shaped shallow water area, with a depth less than around 40 m and an area approximately of 13,000 km2. The Shoal consists of relict sediments remnant from deltaic deposits during the last glacial period and associated with the paleo-Min River. We collected seafloor sediments in and around the Taiwan Shoal to study the sediment characteristics and provenance of the Shoal as well as Taiwanese river sediments to characterize sediment sourced from southern Taiwan. Our results help to understand possible sediment delivery pathways in a source-to-sink context from the southern Taiwan Strait to the northern South China Sea. The method of X-ray diffraction is used to identify mineral compositions for muds and mineral compositions are examined under polarized microscope for sands. Zircon grains are separated from heavy minerals for U-Pb dating in order to understand the sediment source terranes. Sediments of the Taiwan Shoal are mostly tawny-colored, medium to coarse-grained sands with abundant shell fragments and shallow-water benthic foraminifera. Sediments to the south of the Taiwan Shoal and in the outer shelf consist of dark brown-colored and fine-grained sands with rare shell fragments. Siliciclastic compositions of the Taiwan Shoal sediments are mostly quartz. The second abundant composition is rock fragments with more occurrences near the Chinese coastline and the Penghu archipelago. Slate fragments are found to occur near Taiwan, especially in the Penghu Channel area. Clay minerals from the Penghu Channels and south of the Taiwan Shoal are dominated by illite and chlorite with minor smectite and kaolinite. The sediment colors and mineral species are very different for the sediments of the Taiwan Shoal and outer shelf, revealing that these two areas featuring different oceanographic processes and sediment provenance.

ProvenCare: Geisinger's Model for Care Transformation through Innovative Clinical Initiatives and Value Creation.

PubMed

2009-04-01

Geisinger's system of care can be seen as a microcosm of the national delivery of healthcare, with implications for decision makers in other health plans. In this interview, Dr Ronald A. Paulus focuses on Geisinger's unique approach to patient care. In its core, this approach represents a system of quality and value initiatives based on 3 major programs-Proven Health Navigation (medical home); the ProvenCare model; and transitions of care. The goal of such an approach is to optimize disease management by using a rational reimbursement paradigm for appropriate interventions, providing innovative incentives, and engaging patients in their own care as part of any intervention. Dr Paulus explains the reasons why, unlike Geisinger, other stakeholders, including payers, providers, patients, and employers, have no intrinsic reasons to be concerned with quality and value initiatives. In addition, he says, an electronic infrastructure that could be modified as management paradigms evolve is a necessary tool to ensure the healthcare delivery system's ability to adapt to new clinical realities quickly to ensure the continuation of delivering best value for all stakeholders.

Mineralogy and provenance of clays in miarolitic cavities of the Pikes Peak Batholith, Colorado

USGS Publications Warehouse

Kile, D.E.

2005-01-01

Clay samples from 105 cavities within miarolitic granitic pegmatites throughout the Pikes Peak batholith, in Colorado, were analyzed by powder X-ray diffraction (XRD). Smectite (beidellite), illite, and kaolinite were found within the cavities. Calculation of crystallite-thickness distribution (CTD), mean thickness of the crystallites, and variance in crystallite thickness, as deduced from XRD patterns, allowed a determination of provenance and mode of formation for illite and smectite. Authigenic miarolitic-cavity illite and smectite show lognormal CTDs and larger mean thicknesses of crystallites than do their soil-derived counterparts; non-lognormal illite in a cavity results from mixing of cavity and soil illite. Analysis of mean thickness and thickness variance shows that crystal growth of illite is initiated by a nucleation event of short duration, followed by surface-controlled kinetics. Crystallization of the miarolitic cavity clays is presumed to occur by neoformation from hydrothermal fluids. The assessment of provenance allows a determination of regional and local distributions of clay minerals in miarolitic cavities within the Pikes Peak batholith.

Archaeological Chemistry.

ERIC Educational Resources Information Center

Zurer, Pamela S.

1983-01-01

Research projects and methodology in archeochemistry are discussed. Topics include radiocarbon dating, thermoluminescence, amino acid dating, obsidian hydration dating, bone studies, metals/metallurgy, pottery, stone/glass, and future directions. Includes reports on funding, insights into nuclear waste/environmental problems provided by…

SensePath: Understanding the Sensemaking Process Through Analytic Provenance.

PubMed

Nguyen, Phong H; Xu, Kai; Wheat, Ashley; Wong, B L William; Attfield, Simon; Fields, Bob

2016-01-01

Sensemaking is described as the process of comprehension, finding meaning and gaining insight from information, producing new knowledge and informing further action. Understanding the sensemaking process allows building effective visual analytics tools to make sense of large and complex datasets. Currently, it is often a manual and time-consuming undertaking to comprehend this: researchers collect observation data, transcribe screen capture videos and think-aloud recordings, identify recurring patterns, and eventually abstract the sensemaking process into a general model. In this paper, we propose a general approach to facilitate such a qualitative analysis process, and introduce a prototype, SensePath, to demonstrate the application of this approach with a focus on browser-based online sensemaking. The approach is based on a study of a number of qualitative research sessions including observations of users performing sensemaking tasks and post hoc analyses to uncover their sensemaking processes. Based on the study results and a follow-up participatory design session with HCI researchers, we decided to focus on the transcription and coding stages of thematic analysis. SensePath automatically captures user's sensemaking actions, i.e., analytic provenance, and provides multi-linked views to support their further analysis. A number of other requirements elicited from the design session are also implemented in SensePath, such as easy integration with existing qualitative analysis workflow and non-intrusive for participants. The tool was used by an experienced HCI researcher to analyze two sensemaking sessions. The researcher found the tool intuitive and considerably reduced analysis time, allowing better understanding of the sensemaking process.

Provenance of ice rafted debris in the North Atlantic: biomarker approach

NASA Astrophysics Data System (ADS)

Kornilova, O.; Russell, M.; Rosell-Melé, A.

2003-04-01

During the last glacial period, there have been several episodes of quasi-periodic iceberg discharge from the ice sheets into the North Atlantic (Heinrich Events) (Heinrich, 1988). These episodes are recorded in Quaternary sediments as layers of ice rafted debris (IRD), whose properties differ from those of adjacent ambient sediments. Heinrich Events (HEs) are associated with changes in global climate. To determine the cause of HEs, work on provenance of IRD was undertaken. Previous studies included analysis of bulk properties of lithic &organic matter of IRD in Heinrich Layers (HLs) and an attempt to correlate them with possible continental sources (e.g. Grousset et al., 2001). We used biomarker approach to characterise the provenance of IRD in the North Atlantic, similar to oil-source rock correlation well established in petroleum industry. In this work, biomarker composition of Heinrich Layers from several North Atlantic cores was compared with that of possible source areas. As a proxy for source of IRD, we analysed glaciogenic debris flows from trough mouth fans (TMF) that formed as a result of iceberg discharge (Vorren &Laberg, 1997). Those include samples from the Nordic Seas, Labrador Sea, Baffin Bay and combined Arctic sources. Different classes of organic compounds (e.g. photosynthetic pigments and hydrocarbons) were characterised using UV-Vis, LC-MS and GC, GC-MS respectively. Variability within each class, relative abundances of different components and isotopic signatures were considered. Biomarker signatures of debris flows were compared with those of IRD in Heinrich Layers (HLs) from four North Atlantic cores containing HLs 1-6 (MD95-2024, ODP-609, BOSF-5K and SU90-09). Variability between different cores and between different HLs was considered as well as variability within each HL (1-5) for SU90-09. Cluster analysis was performed to correlate sources of IRD (TMFs) and sinks (HLs). Grousset et al. 2001. Zooming in on Heinrich layers. Paleoceanography

Oxygen isotopic ratios in quartz as an indicator of provenance of dust

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jackson, M L

1977-01-01

Quartz was isolated in the long range aerosol size range (fine silt, 1-10 ..mu..m in diameter) from atmospheric aerosols, wind-erosive soils, soil silts, shales, and Pacific pelagic sediments of the Northern and Southern Hemispheres, to trace their provenance or origin, as part of a study of dust mineral sequestering of /sup 137/Cs and other products of nuclear fission. The oxygen isotopic ratio (/sup 18/O//sup 16/O) was determined by mass spectrometry. The provenance has been established for this fine silt fraction which reflects the relative proportion of two classes of quartz source: (a) weathering of igneous and metamorphic rocks (high temperaturemore » origin and low /sup 18/O//sup 16/O ratio) and (b) of quartz crystallized in cherts and overgrowths (low temperature origin and high /sup 18/O//sup 16/O ratio). This quartz mixing ratio is a basic model or paradigm. Analyses of present day atmospheric aerosols and eolian-derived soils, Pacific pelagic sediments, and now-raised Phanerozoic marine sediments show that the Northern and Southern Hemispheres have separate large-scale reservoirs of the fine grain sizes that contribute to aerosol dusts. These can be identified by distinctive values of /sup 18/O//sup 16/O ratios of the quartz therein. The difference in quartz delta/sup 18/O value in parts per thousand per ml (/sup 0///sub 00/ of about 12 +- 2 /sup 0///sub 00/ in Southern Hemisphere mixed detrital sediments and about 19 +- 2 /sup 0///sub 00/ in those of the Northern Hemisphere (for constant size, the 1-10 ..mu..m size fraction) results from the presence of a considerably larger proportion of quartz having low-temperature origin and higher delta/sup 18/O values (chert, silica overgrowths, etc.) in the Northern Hemisphere reservoirs. The early paleoclimatic and paleogeochemical differences remain the control of the North-South Hemisphere difference in delta/sup 18/O values in long-range aerosol sized quartz.« less

Reliability of kinetic visual field testing in children with mutation-proven retinal dystrophies: Implications for therapeutic clinical trials.

PubMed

Dedania, Vaidehi S; Liu, Jerry Y; Schlegel, Dana; Andrews, Chris A; Branham, Kari; Khan, Naheed W; Musch, David C; Heckenlively, John R; Jayasundera, K Thiran

2018-01-01

Kinetic visual field testing is used to monitor disease course in retinal dystrophy clinical care and treatment response in treatment trials, which are increasingly recruiting children. This study investigates Goldmann visual field (GVF) changes in young children with mutation-proven retinal dystrophies as they age and with progression of the retinal degeneration. Retrospective review of children ≤ 17 years old with a mutation-proven retinal dystrophy. Objective clinical disease activity was assessed by a retinal degeneration specialist masked to GVF results. Digital quantification of GVF area was performed. Twenty-nine children (58 eyes), ages 5-16, were identified. GVF area increased with age despite progression in 20 children and clinical stability in nine children. Mean ± standard error increase in GVF area/year was 333 ± 130 mm 2 (I4e, p = 0.012), 720 ± 155 mm 2 (III4e, p < 0.001), and 759 ± 167 mm 2 (IV4e, p < 0.001), with greater increases at earlier ages. Repeatability coefficients were 7381 mm 2 (I4e), 9379 mm 2 (III4e), and 10346 mm 2 (IV4e), indicating a large variability. At 2.5 years after the baseline GVF the area increased ≥ 20%, the criterion for positive treatment outcome defined in recent published therapeutic trials, in 38% (I4e), 34% (III4e), and 33% (IV4e) of eyes. In a substantial proportion of children with mutation-proven retinal dystrophies, there is a significant increase in GVF area with age, particularly those < 12 years, despite progression or stability of disease. These findings suggest that change in GVF area in children with retinal dystrophies can be an unreliable measure of response to treatment and on which to base appropriate counseling about visual impairment.

Performance and genetic variation of big-leaf mahogany (Swietenia macrophylla King) in provenance and progeny trials in the Yucatan Peninsula of Mexico.

Treesearch

Kevyn E. Wightman; Sheila E. Ward; Jeremy P. Haggar; Bartolo Rodriguez Santiago; Jonathan P. Cornelius

2008-01-01

Stocks of the valuable big-leaf mahogany (Swietenia macrophylla King) are declining, and trials for growth and pest resistance are needed to select material for plantations. Seeds were collected from 67 open-pollinated trees from five provenances in the Yucatan Peninsula of Mexico and planted in three provenance/progeny trials in the state of Quintana Roo, Mexico, in...

Provenance evolution in the northern South China Sea and its implication of paleo-drainage systems from Eocene to Miocene

NASA Astrophysics Data System (ADS)

Cui, Y.; Shao, L.; Qiao, P.

2017-12-01

Geochemistry analysis and detrital zircon U-Pb geochronology aim to fully investigate the "source to sink" patterns of northern South China Sea (SCS) from Eocene to Miocene. Evolutional history of the surrounding drainage system has been highly focused on, in comparison to sedimentary characteristics of the SCS basins. Rapid local provenances were prevailed while large-scale fluvial transport remained to evolve during Eocene. Since early Oligocene, sediments from the South China were more abundantly delivered to the northeastern Pearl River Mouth Basin in addition to Dongsha volcanism supplement. Aside from intrabasinal provenances, long-distance transport started to play significant role in Zhu1 Depression, possibly reaching western and southern Baiyun Sag, partially. Western Qiongdongnan Basin might accept sediments from central Vietnam with its eastern area more affected from Hainan Island and Southern Uplift. In the late Oligocene, due to drastic sea-level changes and rapid exhumation, mafic to altramafic sediments were transported in abundance to Central Depression from Kontum Massif, while multiple provenances casted integrated influence on eastern sedimentary sequences. Southern Baiyun Sag was also affected by an increased supplement from the west Shenhu Uplift or even central Vietnam. Overall pattern did not change greatly since early Miocene, but long-distance transport has become dominant in the northern SCS. Under controlled by regional tectonic cycles, Pearl River gradually evolved into the present scale and exerted its influence on basinal provenances by several stages. Zhu1 Depression was partially delivered sediments from its tributaries in early Oligocene while northern Zhu2 Depression has not been provided abundant materials until late Oligocene. Meanwhile, although detailed transportation routine remains uncertain and controversial, an impressive paleo-channel spanning the whole Qiongdongnan Basin was presumed to supply huge amount of mafic to

No difference in the competitive ability of introduced and native Trifolium provenances when grown with soil biota from their introduced and native ranges

PubMed Central

Shelby, Natasha; Hulme, Philip E.; van der Putten, Wim H.; McGinn, Kevin J.; Weser, Carolin; Duncan, Richard P.

2016-01-01

The evolution of increased competitive ability (EICA) hypothesis could explain why some introduced plant species perform better outside their native ranges. The EICA hypothesis proposes that introduced plants escape specialist pathogens or herbivores leading to selection for resources to be reallocated away from defence and towards greater competitive ability. We tested the hypothesis that escape from soil-borne enemies has led to increased competitive ability in three non-agricultural Trifolium (Fabaceae) species native to Europe that were introduced to New Zealand in the 19th century. Trifolium performance is intimately tied to rhizosphere biota. Thus, we grew plants from one introduced (New Zealand) and two native (Spain and the UK) provenances for each of three species in pots inoculated with soil microbiota collected from the rhizosphere beneath conspecifics in the introduced and native ranges. Plants were grown singly and in competition with conspecifics from a different provenance in order to compare competitive ability in the presence of different microbial communities. In contrast to the predictions of the EICA hypothesis, we found no difference in the competitive ability of introduced and native provenances when grown with soil microbiota from either the native or introduced range. Although plants from introduced provenances of two species grew more slowly than native provenances in native-range soils, as predicted by the EICA hypothesis, plants from the introduced provenance were no less competitive than native conspecifics. Overall, the growth rate of plants grown singly was a poor predictor of their competitive ability, highlighting the importance of directly quantifying plant performance in competitive scenarios, rather than relying on surrogate measures such as growth rate. PMID:26969431

Adding Semantics and OPM Ontology for the Provenance of Multi-sensor Merged Climate Data Records. Now What About Reproducibility?

NASA Astrophysics Data System (ADS)

Hua, H.; Wilson, B. D.; Manipon, G.; Pan, L.; Fetzer, E.

2011-12-01

Multi-decadal climate data records are critical to studying climate variability and change. These often also require merging data from multiple instruments such as those from NASA's A-Train that contain measurements covering a wide range of atmospheric conditions and phenomena. Multi-decadal climate data record of water vapor measurements from sensors on A-Train, operational weather, and other satellites are being assembled from existing data sources, or produced from well-established methods published in peer-reviewed literature. However, the immense volume and inhomogeneity of data often requires an "exploratory computing" approach to product generation where data is processed in a variety of different ways with varying algorithms, parameters, and code changes until an acceptable intermediate product is generated. This process is repeated until a desirable final merged product can be generated. Typically the production legacy is often lost due to the complexity of processing steps that were tried along the way. The data product information associated with source data, processing methods, parameters used, intermediate product outputs, and associated materials are often hidden in each of the trials and scattered throughout the processing system(s). We will discuss methods to help users better capture and explore the production legacy of the data, metadata, ancillary files, code, and computing environment changes used during the production of these merged and multi-sensor data products. By leveraging existing semantic and provenance tools, we can capture sufficient information to enable users to track, perform faceted searches, and visualize the provenance of the products and processing lineage. We will explore if sufficient provenance information can be captured to enable science reproducibility of these climate data records.

Vitamin D insufficiency in the first 6 months of infancy and challenge-proven IgE-mediated food allergy at 1 year of age: a case-cohort study.

PubMed

Molloy, J; Koplin, J J; Allen, K J; Tang, M L K; Collier, F; Carlin, J B; Saffery, R; Burgner, D; Ranganathan, S; Dwyer, T; Ward, A C; Moreno-Betancur, M; Clarke, M; Ponsonby, A L; Vuillermin, P

2017-08-01

Ecological evidence suggests vitamin D insufficiency (VDI) due to lower ambient ultraviolet radiation (UVR) exposure may be a risk factor for IgE-mediated food allergy. However, there are no studies relating directly measured VDI during early infancy to subsequent challenge-proven food allergy. To prospectively investigate the association between VDI during infancy and challenge-proven food allergy at 1 year. In a birth cohort (n = 1074), we used a case-cohort design to compare 25-hydroxyvitamin D 3 (25(OH)D 3 ) levels among infants with food allergy vs a random subcohort (n = 274). The primary exposures were VDI (25(OH)D 3 <50 nM) at birth and 6 months of age. Ambient UVR and time in the sun were combined to estimate UVR exposure dose. IgE-mediated food allergy status at 1 year was determined by formal challenge. Binomial regression was used to examine associations between VDI, UVR exposure dose and food allergy and investigate potential confounding. Within the random subcohort, VDI was present in 45% (105/233) of newborns and 24% (55/227) of infants at 6 months. Food allergy prevalence at 1 year was 7.7% (61/786), and 6.5% (53/808) were egg-allergic. There was no evidence of an association between VDI at either birth (aRR 1.25, 95% CI 0.70-2.22) or 6 months (aRR 0.93, 95% CI 0.41-2.14) and food allergy at 1 year. There was no evidence that VDI during the first 6 months of infancy is a risk factor for food allergy at 1 year of age. These findings primarily relate to egg allergy, and larger studies are required. © 2017 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Cheminformatics and the Semantic Web: adding value with linked data and enhanced provenance

PubMed Central

Frey, Jeremy G; Bird, Colin L

2013-01-01

Cheminformatics is evolving from being a field of study associated primarily with drug discovery into a discipline that embraces the distribution, management, access, and sharing of chemical data. The relationship with the related subject of bioinformatics is becoming stronger and better defined, owing to the influence of Semantic Web technologies, which enable researchers to integrate heterogeneous sources of chemical, biochemical, biological, and medical information. These developments depend on a range of factors: the principles of chemical identifiers and their role in relationships between chemical and biological entities; the importance of preserving provenance and properly curated metadata; and an understanding of the contribution that the Semantic Web can make at all stages of the research lifecycle. The movements toward open access, open source, and open collaboration all contribute to progress toward the goals of integration. PMID:24432050

Provenance and sediment fluxes in the Irrawaddy (Ayeyarwadi) River

NASA Astrophysics Data System (ADS)

Garzanti, Eduardo; Wang, Jiangang; Vezzoli, Giovanni; Limonta, Mara

2016-04-01

The Irrawaddy (Ayeyarwadi) River, still a natural system scarcely affected by human activities, ranks among the five major rivers in the world for its annual suspended load, estimated as 364±60 million tons (Robinson et al., 2007). Sourced in Himalayan glaciers southeast of the eastern Himalayan syntaxis at ca. 28°N, the Irrawaddy originates from the confluence of the Nmai and Mali Rivers, flows southward to receive its major Chindwin tributary in the middle of the central Myanmar Basin, and eventually empties through a nine-armed delta into the Andaman Sea. The compositional fingerprint of bedload sand in the upper Irrawaddy is characterized by common feldspars, medium/high rank of metamorphic rock fragments and high heavy-mineral concentration, reflecting provenance from mid-crustal granitoids, amphibolite-facies and subordinately greenschist-facies rocks widely exposed in the Mogok Belt and Lohit Plutonic Complex. Minor volcanic/metavolcanic and serpentinite grains indicate additional supply from volcanic-arc remnants and the Neotethyan ophiolitic suture. Sand of the Chindwin River has much higher quartz/feldspar ratio and much lower metamorphic indices and heavy-mineral concentration, reflecting provenance mainly from upper crustal sedimentary and very low-grade metasedimentary rocks exposed in the Indo-Burman Ranges (Garzanti et al., 2013). Feldspatho-litho-quartzose to litho-feldspatho-quartzose composition in the lower Irrawaddy is intermediate between that of Chindwin and upper Irrawaddy sand. The slight progressive downstream increase in volcanic rock fragments and chert, and decrease in metamorphic indices, point to additional local supply from volcanic and sedimentary cover rocks. U-Pb age spectra of detrital zircons are characterized by a major cluster between 30 and 150 Ma, corresponding to the long-lasting magmatic activity of the Western Myanmar Arc (Wang et al., 2014), with other clusters at 500-600 Ma and 800-1200 Ma, and a few ages between 1

Paleocene Turbidite Deposition in the Central American Seaway (NW Costa Rica): Geochemical Analysis and Provenance of Detrital Spinel and Clinopyroxene

NASA Astrophysics Data System (ADS)

Giblin, A. C.

2015-12-01

The Central American Land Bridge is the crucial connection between North and South America, and the Miocene closure of the Panama seaway led to a change in global oceanic circulation patterns. Modern Costa Rica is part of the island arc that formed over the western Caribbean subduction zone, and the Santa Elena peninsula is on the northwest coast of Costa Rica next to the Sandino forearc basin. This study focuses on the origin and provenance of the Paleocene deep-water Rivas and Descartes turbidites that crop out on the northern part of the Santa Elena peninsula in northwestern Costa Rica. Understanding the sedimentary fill of the Sandino Basin that contributed to the closing of the seaway may lead to a better understanding of the Late Cretaceous-Paleogene arcs. Provenance studies of the Santa Elena Peninsula turbidite sandstone bodies constrain the history of the paleogeography and tectonics of the region. Petrographic analyses of rock thin sections constrain source areas; geochemical analysis of individual detrital heavy minerals from rock samples give indications of sediment sources and tectonic setting during deposition. This study is a provenance analysis based on (i) semi-quantitative energy-dispersive spectrometry analysis of heavy minerals, (ii) quantitative wavelength-dispersive spectrometry for major elements of detrital clinopyroxene and spinel grains, (iii) trace element analysis through laser ablation of single detrital clinopyroxene grains, and (iv) comparative analysis of the different potential source rocks to clearly identify the most likely sediment sources. The detrital spinel and clinopyroxene are possibly sourced from: mantle ophiolites, mid-ocean ridge gabbros, or volcanic arc tholeiitic basalts or calc-alkaline andesites. Spinel and clinopyroxne geochemistry suggests a possible peridotitic source, linked to mantle rocks that are now covered by Tertiary volcanics or have completely eroded. The character of the crustal minerals indicates

Investigation of a Modern Incipient Stromatolite from Obsidian Pool Prime, Yellowstone National Park: Implications for Early Lithification in the Formation of Light-Dark Stromatolite Laminae

NASA Astrophysics Data System (ADS)

Corsetti, F. A.; Berelson, W.; Pepe-Ranney, C. P.; Mata, S. A.; Spear, J. R.

2016-12-01

Stromatolites have been defined multiple ways, but the presence of lamination is common to all definitions. Despite this commonality, the origin of the lamination in many ancient stromatolites remains vague. Lamination styles vary, but sub-mm light-dark couplets are common in many ancient stromatolites. Here, we investigate an actively forming incipient stromatolite from Obsidian Pool Prime (OPP), a hot spring in Yellowstone National Park, to better understand the formation of light-dark couplets similar to many ancient stromatolites in texture and structure. In the OPP stromatolites, a dense network of layer-parallel bundles of cyanobacterial filaments (a dark layer) is followed by an open network of layer-perpendicular or random filaments (a light layer) that reflect a diurnal cycle in the leading edge of the microbial mat that coats the stromatolite's surface. Silica crust encases the cyanobacterial filaments maintaining the integrity of the lamination. Bubbles formed via oxygenic photosynthesis are commonly trapped within the light layers, indicating that lithification occurs rapidly before the bubbles can collapse. The filamentous, non-heterocystous stromatoite-building cyanobacterium from OPP is most closely related to a stromatolite-building cyanobacterium from a hot spring in Japan. Once built, "tenants" from multiple microbial phyla move into the structure, mixing and mingling to produce a complicated integrated biogeochemical signal that may be difficult to untangle in ancient examples. While the cyanobacterial response to the diurnal cycle has been previously implicated in the formation of light-dark couplets, the OPP example highlights the importance of early lithification in maintaining the fabric. Thus, the presence of light-dark couplets and bubble structures may indicate very early lithification and therefore a certain degree of mineral saturation in the ancient ocean or other aquatic system, and that bubble structures, if present, may be evidence

Citicoline – a neuroprotector with proven effects on glaucomatous disease

PubMed Central

Iulia, Chitu; Ruxandra, Tudosescu; Costin, Leasu-Branet; Liliana-Mary, Voinea

2017-01-01

Citicoline is the generic name of cytidine-5’-diphosphocholine (CDP-choline), an endogenous compound that is able to increase the levels of neurotransmitters in the central nervous system by interacting with the synthesis of cellular membranes phospholipids, especially phosphatidylcholine. Exogenous Citicoline, administered by ingestion or injection, is hydrolyzed and dephosphorylated in order to form cytidine and choline, which resynthesize CDP-choline inside brain cells. It has proven neuroprotective effects in Alzheimer disease, stroke, and Parkinson’s disease, as well as in glaucoma and amblyopia. Citicoline acts as a neuroprotector for those patients with progressive glaucomatous disease in spite of well-controlled intraocular pressure. The purpose of this review was to outline the main features of Citicoline and the evidences of its effect in glaucoma. PMID:29450391

Systemic Lupus Erythematosus and Antineutrophil Cytoplasmic Antibody-Associated Vasculitis Overlap Syndrome in Patients With Biopsy-Proven Glomerulonephritis.

PubMed

Jarrot, Pierre-Andre; Chiche, Laurent; Hervier, Baptiste; Daniel, Laurent; Vuiblet, Vincent; Bardin, Nathalie; Bertin, Daniel; Terrier, Benjamin; Amoura, Zahir; Andrés, Emmanuel; Rondeau, Eric; Hamidou, Mohamed; Pennaforte, Jean-Loup; Halfon, Philippe; Daugas, Eric; Dussol, Bertrand; Puéchal, Xavier; Kaplanski, Gilles; Jourde-Chiche, Noemie

2016-05-01

The aim of the study was to report the clinical, biological, and pathological characteristics of patients with glomerulonephritis (GN) secondary to systemic lupus erythematosus (SLE)/antineutrophil cytoplasmic antibodies (ANCA)-associated vasculitis (AAV) overlap syndrome.A nationwide survey was conducted to identify cases of SLE/AAV overlap syndrome. Data were collected from SLE and AAV French research groups. Inclusion criteria were diagnosis of both SLE and AAV according to international classification criteria and biopsy-proven GN between 1995 and 2014. Additional cases were identified through a systematic literature review. A cohort of consecutive biopsy-proven GN was used to study the prevalence of overlapping antibodies and/or overlap syndrome.The national survey identified 8 cases of SLE/AAV overlap syndrome. All patients were female; median age was 40 years. AAV occurred before SLE (n = 3), after (n = 3), or concomitantly (n = 2). Six patients had rapidly progressive GN and 3/8 had alveolar hemorrhage. All patients had antinuclear antibodies (ANA); 7/8 had p-ANCA antimyeloperoxidase (MPO) antibodies. Renal biopsies showed lupus nephritis (LN) or pauci-immune GN. Remission was obtained in 4/8 patients. A literature review identified 31 additional cases with a similarly severe presentation. In the GN cohort, ANCA positivity was found in 30% of LN, ANA positivity in 52% of pauci-immune GN, with no correlation with pathological findings. The estimated prevalence for SLE/AAV overlap syndrome was 2/101 (2%).In patients with GN, SLE/AAV overlap syndrome may occur but with a low prevalence. Most patients have an aggressive renal presentation, with usually both ANA and anti-MPO antibodies. Further studies are needed to assess shared pathogenesis and therapeutic options.

Proven and novel strategies for efficient editing of the human genome.

PubMed

Mussolino, Claudio; Mlambo, Tafadzwa; Cathomen, Toni

2015-10-01

Targeted gene editing with designer nucleases has become increasingly popular. The most commonly used designer nuclease platforms are engineered meganucleases, zinc-finger nucleases, transcription activator-like effector nucleases and the clustered regularly interspaced short palindromic repeat/Cas9 system. These powerful tools have greatly facilitated the generation of plant and animal models for basic research, and harbor an enormous potential for applications in biotechnology and gene therapy. This review recapitulates proven concepts of targeted genome engineering in primary human cells and elaborates on novel concepts that became possible with the dawn of RNA-guided nucleases and RNA-guided transcription factors. Copyright © 2015 Elsevier Ltd. All rights reserved.

Flares in Biopsy-Proven Giant Cell Arteritis in Northern Italy

PubMed Central

Restuccia, Giovanna; Boiardi, Luigi; Cavazza, Alberto; Catanoso, Mariagrazia; Macchioni, Pierluigi; Muratore, Francesco; Cimino, Luca; Aldigeri, Raffaella; Crescentini, Filippo; Pipitone, Nicolò; Salvarani, Carlo

2016-01-01

Abstract This study evaluated the frequency, timing, and characteristics of flares in a large cohort of Italian patients with biopsy-proven giant cell arteritis (GCA) and to identify factors at diagnosis able to predict the occurrence of flares. We evaluated 157 patients with biopsy-proven transmural GCA diagnosed and followed at the Rheumatology Unit of Reggio Emilia Hospital (Italy) for whom sufficient information was available from the time of diagnosis until at least 4 years of follow-up. Fifty-seven patients (36.5%) experienced ≥1 flares. Fifty-one (46.4%) of the 110 total flares (88 relapses and 22 recurrences) were experienced during the first 2 years after diagnosis. The majority of relapses occurred with doses of prednisone ≤ 10 mg/day (82.9%), whereas only 3.4% of relapses occurred for doses ≥ 25 mg/day. Polymyalgia rheumatica (46.5%) and cranial symptoms (41.9%) were the most frequent manifestations at the time of the first relapse. Cumulative prednisone dose during the first year and total cumulative prednisone dose were significantly higher in flaring patients compared with those without flares (7.8 ± 2.4 vs 6.7 ± 2.4 g, P = 0.02; 15.5 ± 8.9 vs 10.0 ± 9.2 g, P = 0.0001, respectively). The total duration of prednisone treatment was longer in flaring patients (58 ± 44 vs 30 ± 30 months, P = 0.0001). Patients with disease flares had at diagnosis more frequently systemic manifestations (P = 0.02) and fever ≥ 38°C (P = 0.02), significantly lower hemoglobin levels (P = 0.05), more frequent presence at temporal artery biopsy (TAB) specimens of giant cells (P = 0.04) and intraluminal acute thrombosis (P = 0.007), and more moderate/severe arterial inflammation (P = 0.009) compared with those without flares. In the multivariate model fever ≥ 38 °C (hazard ratio 2.14; 95% confidence interval, 1.06–4.32, P = 0.03) and the severity of inflammatory infiltrate

Sediment provenance and paleoenvironmental changes in the northwestern shelf mud area of the South China Sea since the mid-Holocene

NASA Astrophysics Data System (ADS)

Xu, Fangjian; Hu, Bangqi; Dou, Yanguang; Liu, Xiting; Wan, Shiming; Xu, Zhaokai; Tian, Xu; Liu, Zhaoqing; Yin, Xuebo; Li, Anchun

2017-07-01

The late Quaternary paleoceanography and paleoenvironment of the South China Sea (SCS) have been well reconstructed over the last decade. In contrast, the provenance of the terrigenous sediments that have accumulated in the northwestern continental shelf mud area remains enigmatic. This study investigated the provenance of these sediments and the paleoenvironmental changes archived in Core X2 via the analysis of geochemical elements, grain size, and accelerator mass spectrometry (AMS) 14C ages. Based on the upper continental crust (UCC)-normalized REE patterns and REE fractionation parameters, southwestern and western Taiwanese rivers and the Pearl River were identified as the main sources of the fine-grained sediment deposited in the northwestern shelf mud area off Hainan Island. This finding further confirms the long-distance transport (> 1000 km) of fine-grained sediment from Taiwanese rivers to the northern SCS shelf and slope. Obvious changes in the grain size and Chemical Index of Alteration (CIA) record occurred at approximately 4.0 cal kyr BP and were likely caused by increased Hainan Island inputs due to sea level changes.

Conifer seedling recruitment across a gradient from forest to alpine tundra: effects of species, provenance, and site

USGS Publications Warehouse

Castanha, C.; Torn, M.S.; Germino, M.J.; Weibel, Bettina; Kueppers, L.M.

2013-01-01

Background: Seedling germination and survival is a critical control on forest ecosystem boundaries, such as at the alpine–treeline ecotone. In addition, while it is known that species respond individualistically to the same suite of environmental drivers, the potential additional effect of local adaptation on seedling success has not been evaluated. Aims: To determine whether local adaptation may influence the position and movement of forest ecosystem boundaries, we quantified conifer seedling recruitment in common gardens across a subalpine forest to alpine tundra gradient at Niwot Ridge, Colorado, USA. Methods: We studied Pinus flexilis and Picea engelmannii grown from seed collected locally at High (3400 m a.s.l.) and Low (3060 m a.s.l.) elevations. We monitored emergence and survival of seeds sown directly into plots and survival of seedlings germinated indoors and transplanted after snowmelt. Results: Emergence and survival through the first growing season was greater for P. flexilis than P. engelmannii and for Low compared with High provenances. Yet survival through the second growing season was similar for both species and provenances. Seedling emergence and survival tended to be greatest in the subalpine forest and lowest in the alpine tundra. Survival was greater for transplants than for field-germinated seedlings. Conclusions: These results suggest that survival through the first few weeks is critical to the establishment of natural germinants. In addition, even small distances between seed sources can have a significant effect on early demographic performance – a factor that has rarely been considered in previous studies of tree recruitment and species range shifts.

Provenance of Late Ordovician Sandstones along the southeastern Appalachian Mountains: Implications for the Tectonic Model of the Taconic Orogeny

NASA Astrophysics Data System (ADS)

Guerrero, J. C.; Herrmann, A. D.; Haynes, J.

2017-12-01

A provenance study of sandstones along the southeastern Appalachian Mountains has been conducted in order to test the current volcanic arc-continent collision and foreland basin formation model of the Taconic Orogeny. Samples along the southeastern Appalachians were taken from sandstone sequences deposited between 460-450 Ma. Results from these sandstones show three dominate age ranges: 465-685 Ma, 980-1300 Ma, and 1300-1500 Ma. The 980-1300 Ma and 1300-1500 Ma ages are seen throughout the study area and are compatible with previously reported ages of the Grenville Orogeny and the Rhyolite-Granite Province. The northernmost samples have a small quantity of 465-685 Ma zircons which is attributed to an accretionary wedge that formed as a result of the continent-island arc collision and acted as a physical barrier keeping sediment from depositing within the basin. The younger age signal becomes stronger to the south, as samples in Georgia and Alabama show strong concentrations of 465-685 zircons. These ages are attributed to exotic terranes (Dalhonega Terrane and Carolina Terrane) that were accreted onto Laurentia during the Taconic Orogeny and/or a possible change in subduction direction leading to a back-arc basin model for the southern Appalachian Taconic Orogeny. The results from this provenance analysis support previous studies indicating that the model for the Taconic Orogeny is a combined A-type subduction for the north and a B-type subduction model for the southern part of the orogeny.

Warming and provenance limit tree recruitment across and beyond the elevation range of subalpine forest

USGS Publications Warehouse

Kueppers, Lara M.; Conlisk, Erin; Castanha, Cristina; Moyes, Andrew B.; Germino, Matthew; de Valpine, Perry; Torn, Margaret S.; Mitton, Jeffry B.

2017-01-01

Climate niche models project that subalpine forest ranges will extend upslope with climate warming. These projections assume that the climate suitable for adult trees will be adequate for forest regeneration, ignoring climate requirements for seedling recruitment, a potential demographic bottleneck. Moreover, local genetic adaptation is expected to facilitate range expansion, with tree populations at the upper forest edge providing the seed best adapted to the alpine. Here, we test these expectations using a novel combination of common gardens, seeded with two widely distributed subalpine conifers, and climate manipulations replicated at three elevations. Infrared heaters raised temperatures in heated plots, but raised temperatures more in the forest than at or above treeline because strong winds at high elevation reduced heating efficiency. Watering increased season-average soil moisture similarly across sites. Contrary to expectations, warming reduced Engelmann spruce recruitment at and above treeline, as well as in the forest. Warming reduced limber pine first-year recruitment in the forest, but had no net effect on fourth-year recruitment at any site. Watering during the snow-free season alleviated some negative effects of warming, indicating that warming exacerbated water limitations. Contrary to expectations of local adaptation, low-elevation seeds of both species initially recruited more strongly than high-elevation seeds across the elevation gradient, although the low-provenance advantage diminished by the fourth year for Engelmann spruce, likely due to small sample sizes. High- and low-elevation provenances responded similarly to warming across sites for Engelmann spruce, but differently for limber pine. In the context of increasing tree mortality, lower recruitment at all elevations with warming, combined with lower quality, high-provenance seed being most available for colonizing the alpine, portends range contraction for Engelmann spruce. The lower

Magnetic Susceptibility and Mineral Zonations Controlled by Provenance in Loess along the Illinois and Central Mississippi River Valleys

USGS Publications Warehouse

Grimley, D.A.; Follmer, L.R.; McKay, E.D.

1998-01-01

Magnetic susceptibility (MS) patterns have proven useful for regional stratigraphic correlations of zones within thick, oxidized Peoria and Roxana Silts along the Illinois and Central Mississippi River valleys for more than 350 km. Variations in MS of C horizon loess are controlled by silt-sized magnetite content and are interpreted to reflect changes in sediment provenance due to fluctuations of the Superior and Lake Michigan glacier lobes and the diversion of the Mississippi River to its present course. Grain size distributions and scanning electron microscopic observations indicate that stratigraphic changes in MS are not significantly influenced by eolian sorting or diagenetic dissolution, respectively. Three compositional zones (lower, middle, and upper) are delineated within Peoria Silt which usually can be traced in the field by MS, the occurrence of clay beds, interstadial soils, and/or subtle color changes. These zones can be correlated with, but are generally of more practical use than, previously studied dolomite zones (McKay, 1977) or clay mineral zones (Frye et al., 1968). However, mineralogical analyses can help to substantiate zone boundaries when in question. MS and compositional zones may indirectly record a climatic signal, primarily through the effect that global cooling has had on ice lobe fluctuations in the Upper Mississippi drainage basin. ?? 1998 University of Washington.

Upper Miocene-Pliocene provenance evolution of the Central Canyon in northwestern South China Sea

NASA Astrophysics Data System (ADS)

Cui, Yuchi; Shao, Lei; Qiao, Peijun; Pei, Jianxiang; Zhang, Daojun; Tran, Huyen

2018-06-01

Provenance studies of the Central Canyon, Qiongdongnan Basin has provided significant insights into paleographic and sedimentology research of the South China Sea (SCS). A suite of geochemical approaches mainly including rare earth elemental (REE) analysis and detrital zircon U-Pb dating has been systematically applied to the "source-to-sink" system involving our upper Miocene-Pliocene Central Canyon sediments and surrounding potential source areas. Based on samples tracing the entire course of the Central Canyon, REE distribution patterns indicate that the western channel was generally characterized by positive Eu anomalies in larger proportion, in contrast to the dominance of negative values of its eastern side during late Miocene-Pliocene. Additionally, for the whole canyon and farther regions of Qiongdongnan Basin, the number of samples bearing negative Eu anomalies tended to increase within younger geological strata. On the other hand, U-Pb geochronology results suggest a wide Proterozoic to Mesozoic age range with peak complexity in Yanshanian, Indosinian, Caledonian and Jinningian periods. However in detail, age combination of most western samples displayed older-age signatures than the eastern. To make it more evidently, western boreholes of the Central Canyon are mainly characterized with confined Indosinian and Caledonian clusters which show great comparability with mafic-to-ultramafic source of Kontum Massif of Central Vietnam, while eastern samples largely bear with distinguishable Yanshanian and Indosinian peaks which more resemble with Hainan Island. Based on geochemistry and geochronology analyses, two significant suppliers and sedimentary infilling processes are generated: (1) the Indosinian collision orogenic belt in central-northern Vietnam, Indochina has ever played significant role in Central Canyon sedimentary evolution, (2) Hainan Island once as a typical provenance restricted within eastern Central Canyon, has been enlarging its influence

Functional Requirements for Information Resource Provenance on the Web

DOE Office of Scientific and Technical Information (OSTI.GOV)

McCusker, James P.; Lebo, Timothy; Graves, Alvaro

We provide a means to formally explain the relationship between HTTP URLs and the representations returned when they are requested. According to existing World Wide Web architecture, the URL serves as an identier for a semiotic referent while the document returned via HTTP serves as a representation of the same referent. This begins with two sides of a semiotic triangle; the third side is the relationship between the URL and the representation received. We complete this description by extending the library science resource model Functional Requirements for Bibliographic Resources (FRBR) with cryptographic message and content digests to create a Functionalmore » Requirements for Information Resources (FRIR). We show how applying the FRIR model to HTTP GET and POST transactions disambiguates the many relationships between a given URL and all representations received from its request, provides fine-grained explanations that are complementary to existing explanations of web resources, and integrates easily into the emerging W3C provenance standard.« less

Sap sugar parameters of silver maple provenances and clones grown on upland and bottomland sites

Treesearch

J. J. Zaczek; A. D. Carver; K. W. J. Williard; J. K. Buchheit; J. E. Preece; J. C. Mangun

2003-01-01

Sap sugar concentration (SSC), sap volume, and stem diameter were measured for 49 different silver maple clones representing a range-wide collection of 13 provenances within replicated upland and bottomland plantations in southern Illinois during the winter of 2001. For comparison, 42 sugar maple trees were sampled in a local sugarbush. Silver maple SSC averaged 1.51...

Tracing salt provenance in McMurdo Dry Valley soils by using magnesium isotopes

NASA Astrophysics Data System (ADS)

Cuozzo, N.; Sletten, R. S.; Hu, Y.; Teng, F. Z.

2016-12-01

The McMurdo Dry Valleys (MDV) are a hyper-arid polar desert that contain a rich geologic record in permafrost that has been preserved over millions of years. Soluble salts accumulate through the surface and subsurface of MDV soils. Sources of salt accumulation include mineral weathering, transport of marine aerosols, and possible glacial meltwater. This project seeks to study the provenance of these salts in a 30-meter ice cemented permafrost core collected in Beacon Valley. The ice-rich core was thawed and water extracted by centrifugation using a double bottom centrifuge tube. The extracted water was analyzed for ionic composition, pH, and Mg isotopes (δ26Mg), which are useful in interpreting provenance. The ionic and δ26Mg values show a disconformity at around 7 meters. Above 7 meters, δ26Mg values vary between -0.76 to -0.52, indicating rock-water interactions. These samples are isotopically heavier than the lower section of the core and can be explained by a slow accumulation of sediment and warmer near-surface temperatures that allow for greater chemical weathering of dolerite in the ice-cemented, debris-rich permafrost core. This interpretation is also supported by the more alkaline pH values (7.07 - 7.54) above 7 meters, which is consistent with chemical weathering of dolerite. In comparison, salt samples below 7 meters have δ26Mg values between -0.95 to -0.84, which overlaps with modern seawater (δ26Mg = -0.83 ± 0.09) and is fairly consistent throughout the rest of the core. Furthermore, below a depth of 7 meters, Mg/Na and Mg/K ratios are also similar to modern seawater. In summary, these results indicate differing sources of salts along the depth of the Dry Valley permafrost core, changing from a marine-dominant signature in the deeper section to a stronger weathered signal in the upper section. Additional work dating the sediment using cosmogenic nuclides provides a history for the burial of the sediments in the permafrost core and may provide

Experimental evaluation of job provenance in ATLAS environment

NASA Astrophysics Data System (ADS)

Křenek, A.; Sitera, J.; Chudoba, J.; Dvořák, F.; Filipovič, J.; Kmuníček, J.; Matyska, L.; Mulaš, M.; Ruda, M.; Šustr, Z.; Campana, S.; Molinari, E.; Rebatto, D.

2008-07-01

Grid middleware stacks, including gLite, matured into the state of being able to process up to millions of jobs per day. Logging and Bookkeeping, the gLite job-tracking service, keeps pace with this rate; however, it is not designed to provide a long-term archive of information on executed jobs. ATLAS — representative of a large user community — addresses this issue with its own job catalogue (ProdDB). Development of such a customized service, not easily reusable, took considerable effort which is not affordable by smaller communities. On the contrary, Job Provenance (JP), a generic gLite service designed for long-term archiving of information on executed jobs focusing on scalability, extensibility, uniform data view, and configurability, allows more specialized catalogues to be easily built. We present the first results of an experimental JP deployment for the ATLAS production infrastructure where a JP installation was fed with a part of ATLAS jobs, and also stress tested with real production data. The main outcome of this work is a demonstration that JP can complement large-scale application-specific job catalogue services, while serving a similar purpose where there are none available.

Descartes Mountains and Cayley Plains - Composition and provenance

NASA Technical Reports Server (NTRS)

Drake, M. J.; Taylor, G. J.; Goles, G. G.

1974-01-01

Trace element compositions of petrographically characterized 2-4 mm lithic fragments from Apollo 16 soil samples are used to calculate initial REE concentrations in liquids in equilibrium with lunar anorthosites and to discuss the provenance of the Cayley Formation. Lithic fragments may be subdivided into four groups: (1) ANT rocks, (2) K- and SiO2-rich mesostasis-bearing rocks, (3) poikiloblastic rocks, and (4) (spinel) troctolites. Model liquids in equilibrium with essentially monominerallic anorthosites have initial REE concentrations 5-8 times those of chondrites. The REE contents of K- and SiO2-rich mesostasis-bearing rocks and poikiloblastic rocks are dominated by the mesostasis phases. ANT rocks appear to be more abundant in the Descartes Mountains, while poikiloblastic rocks appear to be more abundant in the Cayley Plains. Poikiloblastic rocks have intermediate to high LIL-element concentrations yet the low gamma-ray activity of Mare Orientale implies low LIL-element concentrations. Consequently, it is unlikely that the Cayley Formation is Orientale ejecta. A local origin as ejecta from smaller impacts is a more plausible model for the deposition of the Cayley Formation.

Magnetic susceptibility of tektites and some other glasses

USGS Publications Warehouse

Senftle, F.E.; Thorpe, A.

1959-01-01

The magnetic susceptibility at several magnetic field strengths of about thirty tektites from various localities have been measured. The susceptibility ranges from 2 ?? 10-6 to about 7.9 ?? 10-6 e.m.u./g. Tektites from a given locality have similar susceptibilities. The intensity of magnetization of all the tektites measured is zero or very small. For comparison, the same measurements have been made on about thirty obsidians. The magnetic susceptibilities cover approximately the same range, but the intensity of magnetization of the impurity was found to be much higher. By heating the obsidians to 1450??C the intensity of magnetization was reduced to zero. From the above data, it is shown that the tektites must have been heated well above 1400??C, and that essentially all the iron is in solution. On the other hand, the evidence shows that obsidians have not been heated much above this temperature, and that there is a significant amount of undissolved iron in the glass, probably as magnetite. Further, if tektites are extraterrestrial, they probably entered the earth's atmosphere as a glass. ?? 1959.

Sr - an element shows the way - Applications of Sr isotopes for provenance, tracing and migration (Invited)

NASA Astrophysics Data System (ADS)

Prohaska, T.; Irrgeher, J.; Zitek, A.; Teschler Nicola, M.

2010-12-01

Strontium - named after the small Scottish town Strontian - as such is an element with little popularity. Firstly described by Martin Heinrich Klaproth in 1798, the metal is used in metallurgy to some extent whereas its compounds are interesting in glass industries, electronics and pyrotechnics. The element has chemical similarity to Ca and makes up 1/60 of the earth’s amount of the latter. Nonetheless, it is its isotopic composition which makes Sr so interesting for a large number of scientists. The natural composition of the four naturally occurring isotopes (84Sr, 86Sr 87Sr and 88Sr) varies in nature due to the radioactive decay of 87Rb to 87Sr. Thus, it was early recognized as geochronometer especially in Ca rich matrices. With increasing precision of applied methodology, the natural variation of the 87Sr/86Sr isotope ratio (analyzed at first mainly by thermal ionization mass spectrometry (TIMS)) became more and more popular in provenance studies. The natural variation of the ratio is mainly determined by the geological age and the original composition of the rock and can be used therefore as fingerprint of the local geology. The ratio is transferred with no significant fractionation via the water into plants and finally via the food chain into animal and human tissues (especially bones and teeth). As the element is chemically similar to Ca, it appears in most matrices. The use for provenance studies is supported by the fact that the long half life (4.8 x 1010 years) does not lead to an alteration during the time scales which are investigated (from recent samples to human or animal skeletal remains which date back up to 30.000 BC). The uniqueness of the system besides the natural variation is defined by the ubiquity in nature and the relatively high (and thus measurable) elemental concentration in most tissues. It was finally the advent of multiple collector inductively coupled plasma mass spectrometry (MC-ICP-MS) which augmented the number of applications

Using Motivational Interviewing with School-Age Bullies: A New Use for a Proven, Evidence-Based Intervention

ERIC Educational Resources Information Center

Juhnke, Brenna A.; Juhnke, Gerald A.; Curtis, Russell C.; Thompson, E. Heather; Coll, Kenneth M.; Yu, Fangzhou; Moyer, Michael S.; Mullett, Alison

2013-01-01

Motivational interviewing is a proven, evidence-based intervention. It has been successfully utilized as a potent intervention with students presenting a broad range of concerns from substance abuse to obesity. To date, however, no articles exist within the general counseling literature or the "Journal of School Counseling" specifically…

The function of prehistoric lithic tools: a combined study of use-wear analysis and FTIR microspectroscopy.

PubMed

Nunziante Cesaro, Stella; Lemorini, Cristina

2012-02-01

The application of combined use-wear analysis and FTIR micro spectroscopy for the investigation of the flint and obsidian tools from the archaeological sites of Masseria Candelaro (Foggia, Italy) and Sant'Anna di Oria (Brindisi, Italy) aiming to clarify their functional use is described. The tools excavated in the former site showed in a very high percentage spectroscopically detectable residues on their working edges. The identification of micro deposits is based on comparison with a great number of replicas studied in the same experimental conditions. FTIR data confirmed in almost all cases the use-wear analysis suggestions and added details about the material processed and about the working procedures. Copyright © 2011 Elsevier B.V. All rights reserved.

Systemic Lupus Erythematosus and Antineutrophil Cytoplasmic Antibody-Associated Vasculitis Overlap Syndrome in Patients With Biopsy-Proven Glomerulonephritis

PubMed Central

Jarrot, Pierre-Andre; Chiche, Laurent; Hervier, Baptiste; Daniel, Laurent; Vuiblet, Vincent; Bardin, Nathalie; Bertin, Daniel; Terrier, Benjamin; Amoura, Zahir; Andrés, Emmanuel; Rondeau, Eric; Hamidou, Mohamed; Pennaforte, Jean-Loup; Halfon, Philippe; Daugas, Eric; Dussol, Bertrand; Puéchal, Xavier; Kaplanski, Gilles; Jourde-Chiche, Noemie

2016-01-01

Abstract The aim of the study was to report the clinical, biological, and pathological characteristics of patients with glomerulonephritis (GN) secondary to systemic lupus erythematosus (SLE)/antineutrophil cytoplasmic antibodies (ANCA)-associated vasculitis (AAV) overlap syndrome. A nationwide survey was conducted to identify cases of SLE/AAV overlap syndrome. Data were collected from SLE and AAV French research groups. Inclusion criteria were diagnosis of both SLE and AAV according to international classification criteria and biopsy-proven GN between 1995 and 2014. Additional cases were identified through a systematic literature review. A cohort of consecutive biopsy-proven GN was used to study the prevalence of overlapping antibodies and/or overlap syndrome. The national survey identified 8 cases of SLE/AAV overlap syndrome. All patients were female; median age was 40 years. AAV occurred before SLE (n = 3), after (n = 3), or concomitantly (n = 2). Six patients had rapidly progressive GN and 3/8 had alveolar hemorrhage. All patients had antinuclear antibodies (ANA); 7/8 had p-ANCA antimyeloperoxidase (MPO) antibodies. Renal biopsies showed lupus nephritis (LN) or pauci-immune GN. Remission was obtained in 4/8 patients. A literature review identified 31 additional cases with a similarly severe presentation. In the GN cohort, ANCA positivity was found in 30% of LN, ANA positivity in 52% of pauci-immune GN, with no correlation with pathological findings. The estimated prevalence for SLE/AAV overlap syndrome was 2/101 (2%). In patients with GN, SLE/AAV overlap syndrome may occur but with a low prevalence. Most patients have an aggressive renal presentation, with usually both ANA and anti-MPO antibodies. Further studies are needed to assess shared pathogenesis and therapeutic options. PMID:27258503

Detrital fingerprints of fossil continental-subduction zones (Axial Belt Provenance, European Alps)

NASA Astrophysics Data System (ADS)

Resentini, Alberto; Garzanti, Eduardo; Vezzoli, Giovanni; Andò, Sergio; Malusà, Marco G.; Padoan, Marta; Paparella, Paolo

2010-05-01

Alpine-type collision orogens are generated by attempted subduction of thinned continental margins. Because of complex tectonic structure, orogenic detritus is characterized by a range of detrital signatures, making its recognition an arduous task (Dickinson and Suczek, 1979). Among the various orogenic sub-provenances, Axial Belt Provenance, derived from the erosion of the neometamorphic axial pile, can be regarded as the most typifying signature of collision orogens (Garzanti et al., 2007). In the Austroalpine Cretaceous and Penninic Eocene axial belts of the Alps, we ideally distinguish three structural levels, each characterized by diagnostic detrital fingerprints. The shallow level chiefly consists of offscraped remnant-ocean turbidites and unmetamorphosed continental-margin sediments, and mostly produces lithic to lithoquartzose sedimentaclastic sands yielding very-poor heavy-mineral suites including ultrastable minerals. The intermediate level includes low-grade metasediments and polymetamorphic basements, and sheds lithoquartzose to quartzolithofeldspathic metamorphiclastic sands yielding moderately-rich epidote- amphibole suites with chloritoid or garnet. The deep level contains eclogitic remnants of continent- ocean transitions, and supplies quartzofeldspathic to quartzolithic high-rank metamorphiclastic to lithic ultramaficlastic sands yielding rich to extremely-rich suites dominated by garnet, hornblende, or epidote depending on protoliths (continental vs. oceanic) and pressure/temperature paths followed during exhumation. Although widely overprinted under greenschist-facies or amphibolite-facies conditions, occurrence of ultradense eclogite in source areas is readily revealed by the Heavy Mineral Concentration (HMC) index, which mirrors the average density of source rocks in the absence of hydraulic-sorting effects (Garzanti and Andò 2007). The Metamorphic Index (MI, Garzanti and Vezzoli, 2003) and Hornblende Colour Index (HCI) reflect peak

Testing Models of Modern Glacial Erosion of the St. Elias Mountains, Alaska Using Marine Sediment Provenance

NASA Astrophysics Data System (ADS)

Penkrot, M. L.; Jaeger, J. M.; Loss, D. P.; Bruand, E.

2015-12-01

The glaciated coastal St. Elias Range in Alaska is a primary site to examine climate-tectonic interactions. Work has primarily focused on the Bering-Bagley and Malaspina-Seward ice fields, utilizing detrital and bedrock zircon and apatite geochronology to examine local exhumation and glacial erosion (Berger et al., 2008; Enkelmann et al., 2009; Headly et al., 2013). These studies argue for specific regions of tectonically focused or climatically widespread glacial erosion. Analyzed zircon and apatite grains are sand size, however glacial erosion favors the production of finer-grained sediments. This study focuses on the geochemical provenance of the silt-size fraction (15-63μm) of surface sediments collected throughout the Gulf of Alaska (GOA) seaward of the Bering and Malaspina glaciers to test if the exhumation patterns observed in zircon and apatites are also applicable for the silt size fraction. Onshore bedrock Al-normalized elemental data were used to delineate sediment sources, and a subset of provenance-applicable elements was chosen. Detrital thermochronologic data suggest that sediment produced by the Bagley/Bering system is derived from bedrock on the windward side with input from the Chugach Metamorphic Complex (CMC) underlying the Bagley only during glacial surge events (Headly et al., 2013). Geochemical observations of GOA silt deposited during the 1994-95 surge event confirm input of CMC sediment (elevated in Cr, Ni, Sc, Sr, depleted in Hf, Pb and Rb relative to Kultieth and Poul Creek formations). We also observe a windward-side sediment source (Kultieth and Poul Creek). It is hypothesized that the sediment carried by the Malaspina is primarily from CMC rock underlying the Seward ice field mixed with Yakataga formation rock that underlies the Seward throat (Headly et al., 2013). Geochemical observations of GOA silt support this hypothesis.

Development of a novel method for unraveling the origin of natron flux used in Roman glass production based on B isotopic analysis via multicollector inductively coupled plasma mass spectrometry.

PubMed

Devulder, Veerle; Degryse, Patrick; Vanhaecke, Frank

2013-12-17

The provenance of the flux raw material used in the manufacturing of Roman glass is an understudied topic in archaeology. Whether one or multiple sources of natron mineral salts were exploited during this period is still open for debate, largely because of the lack of a good provenance indicator. The flux is the major source of B in Roman glass. Therefore, B isotopic analysis of a sufficiently large collection and variety (origin and age) of such glass samples might give an indication of the number of flux sources used. For this purpose, a method based on acid digestion, chromatographic B isolation and B isotopic analysis using multicollector inductively coupled plasma mass spectrometry was developed. B isolation was accomplished using a combination of strong cation exchange and strong anion exchange chromatography. Although the B fraction was not completely matrix-free, the remaining Sb was shown not to affect the δ(11)B result. The method was validated using obsidian and archaeological glass samples that were stripped of their B content, after which an isotopic reference material with known B isotopic composition was added. Absence of artificial B isotope fractionation was demonstrated, and the total uncertainty was shown to be <2‰. A proof-of-concept application to natron glass samples showed a narrow range of δ(11)B, whereas first results for natron salt samples do show a larger difference in δ(11)B. These results suggest the use of only one natron source or of several sources with similar δ(11)B. This indicates that B isotopic analysis is a promising tool for the provenance determination of this flux raw material.

Scale models: A proven cost-effective tool for outage planning

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lee, R.; Segroves, R.

1995-03-01

As generation costs for operating nuclear stations have risen, more nuclear utilities have initiated efforts to improve cost effectiveness. Nuclear plant owners are also being challenged with lower radiation exposure limits and new revised radiation protection related regulations (10 CFR 20), which places further stress on their budgets. As source term reduction activities continue to lower radiation fields, reducing the amount of time spent in radiation fields becomes one of the most cost-effective ways of reducing radiation exposure. An effective approach for minimizing time spent in radiation areas is to use a physical scale model for worker orientation planning andmore » monitoring maintenance, modifications, and outage activities. To meet the challenge of continued reduction in the annual cumulative radiation exposures, new cost-effective tools are required. One field-tested and proven tool is the physical scale model.« less

Sedimentary provenance of Maastrichtian oil shales, Central Eastern Desert, Egypt

NASA Astrophysics Data System (ADS)

Fathy, Douaa; Wagreich, Michael; Mohamed, Ramadan S.; Zaki, Rafat

2017-04-01

Maastrichtian oil shales are distributed within the Central Eastern Desert in Egypt. In this study elemental geochemical data have been applied to investigate the probable provenance of the sedimentary detrital material of the Maastrichtian oil shale beds within the Duwi and the Dakhla formations. The Maastrichtian oil shales are characterized by the enrichment in Ca, P, Mo, Ni, Zn, U, Cr and Sr versus post-Archean Australian shales (PAAS). The chondrite-normalized patterns of the Maastrichtian oil shale samples are showing LREE enrichment, HREE depletion, slightly negative Eu anomaly, no obvious Ce anomaly and typical shale-like PAAS-normalized patterns. The total REE well correlated with Si, Al, Fe, K and Ti, suggesting that the REE of the Maastrichtian oil shales are derived from terrigenous source. Chemical weathering indices such as Chemical Index of Alteration (CIA), Chemical Proxy of Alteration (CPA) and Plagioclase Index of Alteration (PIA) indicate moderate to strong chemical weathering. We suggest that the Maastrichtian oil shale is mainly derived from first cycle rocks especially intermediate rocks without any significant inputs from recycled or mature sources. The proposed data illustrated the impact of the parent material composition on evolution of oil shale chemistry. Furthermore, the paleo-tectonic setting of the detrital source rocks for the Maastrichtian oil shale is probably related to Proterozoic continental island arcs

The 4Ps of Breast Cancer Chemoprevention: Putting Proven Principles into Practice.

PubMed

Jordan, V Craig

2017-04-01

The pioneering Royal Marsden Tamoxifen Prevention Trial recruited 2,471 eligible high-risk women to be randomized to either placebo or tamoxifen (20 mg daily) for 8 years. Breast cancer incidence was evaluated at a median of 18.4 years from the start of the study. There was a 32% reduction in estrogen/progesterone receptor (ER/PR)-positive breast cancers after tamoxifen treatment finished. Translational research, to study "the good, the bad, and the ugly of tamoxifen" in the 1980s, subsequently ensured women's safety from possible increases in osteoperosis, coronary heart disease, and endometrial cancer. Other tamoxifen chemoprevention trials followed. The result of laboratory research was the unanticipated discovery of raloxifene to prevent osteoporosis and breast cancer at the same time. A new group of medicines, now known as selective ER modulators, was established. Indeed, the ability to prevent or delay multiple diseases with a single cheap medicine has the potential to alleviate pressure on health care systems that are overwhelmed. It is a priority to educate physicians appropriately to apply recommended proven medicines as preventives. Cancer Prev Res; 10(4); 219-22. ©2017 AACR See related article by Detre, et al., Cancer Prev Res 2017;10(3):171-6 . ©2017 American Association for Cancer Research.

Characterization and provenance of the building stones from Pompeii's archaeological site (southern Italy)

NASA Astrophysics Data System (ADS)

Balassone, G.; Kastenmeier, P.; di Maio, G.; Mormone, A.; Joachimski, M.

2009-04-01

Pompeii is one of the most famous and complex areas of archaeological investigation in the world and with a uniquely favorable state of preservation. Even if many studies have been devoted in time to many archaeological aspects of this ancient city, large-scale and detailed studies aimed at characterizing mineralogy, petrography and isotope geochemistry of the building stones are still lacking. The scope of the present research is to fill this gap, pointing to the definition of the provenance of the stony materials used for ancient constructions of the city of Pompeii and to the possible trade routes. This work is part of a large-scale survey carried out by the Deutsches Archäologisches Institut of Berlin, with the purposes of reconstructing the sources of raw materials of various archaeological sites of the Sarno Plain (e.g. Longola-Poggiomarino settlement, Nuceria, Stabiae, etc.) and consequently also the paleo-environments of this area during the Olocene (Seiler, 2006, 2008; Kastemeier and Seiler, 2007). We sampled all the litotypes with different macroscopic characteristics from various buildings according to location, age (time span VI century B.C. - I century A.D.) and utilization; the architectural buildings considered for this study are mainly represented public and religious buildings, houses and funerary monuments. As possible source areas, representative litotypes have been sampled from ancient pits and outcrops surrounding Pompeii as well. A set of 80 samples have been sampled by means of micro-drillings for mineralogical, petrographic and geochemical analyses, comprising optical microscopy, X-ray diffraction, inductively coupled plasma mass, X-ray fluorescence and C-O isotope geochemistry. Minero-petrographic and XRD studies of Pompeii rock samples have shown that at least ten different litologies occur as building stones, belonging to basaltic to tephritic lavas, pyroclasts (tuffs, scoriae, etc.) and sedimentary rocks (limestone, travertines

Crystal-proven Gout and Characteristic Gout Severity Factors are Associated with Cardiovascular Disease.

PubMed

Disveld, Iris J M; Fransen, Jaap; Rongen, Gerard A; Kienhorst, Laura B E; Zoakman, Sahel; Janssens, Hein J E M; Janssen, Matthijs

2018-04-15

Our aim was to examine the prevalence of cardiovascular disease (CVD) in patients with crystal-proven gout compared to arthritis controls. Further, we analyzed the association between characteristic gout severity factors and CVD to provide further support for a pathogenetic relationship between gout and CVD. Patients with arthritis referred for diagnosis were consecutively included in the Gout Arnhem-Liemers cohort. Joint fluid analysis was performed in all referred patients; controls were negative for crystals. Patients' characteristics and different manifestations of CVD and gout severity factors (disease duration, attack frequency, tophi, affected joints, high serum urate acid level, joint damage) were collected. Gout patients were compared with controls for the prevalence of CVD. In addition, the association between characteristic gout severity factors and presence of CVD was analyzed. Data from 700 gout patients and 276 controls were collected. CVD was present in 47% (95% CI 44%-51%) and 24% (95% CI 19%-29%) of gout patients and controls, respectively. Corrected for confounders, gout was still strongly associated with an increased prevalence of CVD compared to controls (OR 3.39, 95% CI 2.37-4.84). In patients with gout, disease duration ≥ 2 years, oligo- or polyarthritis, serum urate acid > 0.55 mmol/l at presentation, and joint damage were independently (p < 0.05) associated with prevalent CVD. Crystal-proven gout was strongly associated with an increased prevalence of CVD. In patients with gout, characteristic gout severity factors were associated with CVD.

Rare earth element fingerprints in Korean coastal bay sediments: Association with provenance discrimination

NASA Astrophysics Data System (ADS)

Kang, Jeongwon; Woo, Han Jun; Jang, Seok; Jeong, Kap-Sik; Jung, Hoi-Soo; Hwang, Ha Gi; Lee, Jun-Ho; Cho, Jin Hyung

2016-09-01

Rare earth elements (REEs: La-Lu) in surface sediments collected from the mouth and middle tidal flats of Gomso Bay, South Korea, in August 2011 and May 2012 were analyzed to investigate the fine-grained sediment provenance. The upper continental crust (UCC)-normalized light REEs (LREEs: La to Nd) were more enriched than the middle REEs (MREEs: Sm to Dy) and heavy REEs (HREEs: Ho to Lu), resulting in large (La/Yb)UCC (1.9 ± 0.4) to (Gd/Yb)UCC (1.4 ± 0.2) ratios. The monthly (La/Yb)UCC values differed between the mouth and middle tidal flats due to deposition of fine-grained sediments that originated from distant rivers (the Geum and Yeongsan) and the Jujin Stream, located on the southern shore of the inner bay. We observed relative reductions in the (La/Yb)UCC value and REE content in the sediments from the mouth of the bay compared with those from Jujin Stream sediments. Confined to the middle tidal flat around the KH Line of Jujin Stream, the sediments, most enriched in LREEs but depleted in Eu, were distributed in August as strong Jujin Stream runs. Here, we suggest that an increase in LREE/HREE and decrease in MREE/LREE ratios can be used as a proxy to identify the Jujin Stream provenance in mixed riverine sediments and to trace Jujin Stream sediments within the Gomso Bay tidal flat, especially in the summer rainy season.

An ecological genetic delineation of local seed-source provenance for ecological restoration

PubMed Central

Krauss, Siegfried L; Sinclair, Elizabeth A; Bussell, John D; Hobbs, Richard J

2013-01-01

An increasingly important practical application of the analysis of spatial genetic structure within plant species is to help define the extent of local provenance seed collection zones that minimize negative impacts in ecological restoration programs. Here, we derive seed sourcing guidelines from a novel range-wide assessment of spatial genetic structure of 24 populations of Banksia menziesii (Proteaceae), a widely distributed Western Australian tree of significance in local ecological restoration programs. An analysis of molecular variance (AMOVA) of 100 amplified fragment length polymorphism (AFLP) markers revealed significant genetic differentiation among populations (ΦPT = 0.18). Pairwise population genetic dissimilarity was correlated with geographic distance, but not environmental distance derived from 15 climate variables, suggesting overall neutrality of these markers with regard to these climate variables. Nevertheless, Bayesian outlier analysis identified four markers potentially under selection, although these were not correlated with the climate variables. We calculated a global R-statistic using analysis of similarities (ANOSIM) to test the statistical significance of population differentiation and to infer a threshold seed collection zone distance of ∼60 km (all markers) and 100 km (outlier markers) when genetic distance was regressed against geographic distance. Population pairs separated by >60 km were, on average, twice as likely to be significantly genetically differentiated than population pairs separated by <60 km, suggesting that habitat-matched sites within a 30-km radius around a restoration site genetically defines a local provenance seed collection zone for B. menziesii. Our approach is a novel probability-based practical solution for the delineation of a local seed collection zone to minimize negative genetic impacts in ecological restoration. PMID:23919158

Warming and provenance limit tree recruitment across and beyond the elevation range of subalpine forest.

PubMed

Kueppers, Lara M; Conlisk, Erin; Castanha, Cristina; Moyes, Andrew B; Germino, Matthew J; de Valpine, Perry; Torn, Margaret S; Mitton, Jeffry B

2017-06-01

Climate niche models project that subalpine forest ranges will extend upslope with climate warming. These projections assume that the climate suitable for adult trees will be adequate for forest regeneration, ignoring climate requirements for seedling recruitment, a potential demographic bottleneck. Moreover, local genetic adaptation is expected to facilitate range expansion, with tree populations at the upper forest edge providing the seed best adapted to the alpine. Here, we test these expectations using a novel combination of common gardens, seeded with two widely distributed subalpine conifers, and climate manipulations replicated at three elevations. Infrared heaters raised temperatures in heated plots, but raised temperatures more in the forest than at or above treeline because strong winds at high elevation reduced heating efficiency. Watering increased season-average soil moisture similarly across sites. Contrary to expectations, warming reduced Engelmann spruce recruitment at and above treeline, as well as in the forest. Warming reduced limber pine first-year recruitment in the forest, but had no net effect on fourth-year recruitment at any site. Watering during the snow-free season alleviated some negative effects of warming, indicating that warming exacerbated water limitations. Contrary to expectations of local adaptation, low-elevation seeds of both species initially recruited more strongly than high-elevation seeds across the elevation gradient, although the low-provenance advantage diminished by the fourth year for Engelmann spruce, likely due to small sample sizes. High- and low-elevation provenances responded similarly to warming across sites for Engelmann spruce, but differently for limber pine. In the context of increasing tree mortality, lower recruitment at all elevations with warming, combined with lower quality, high-provenance seed being most available for colonizing the alpine, portends range contraction for Engelmann spruce. The lower

Warming and provenance limit tree recruitment across and beyond the elevation range of subalpine forest

DOE PAGES

Kueppers, Lara M.; Conlisk, Erin; Castanha, Cristina; ...

2016-12-15

Climate niche models project that subalpine forest ranges will extend upslope with climate warming. These projections assume that the climate suitable for adult trees will be adequate for forest regeneration, ignoring climate requirements for seedling recruitment, a potential demographic bottleneck. Moreover, local genetic adaptation is expected to facilitate range expansion, with tree populations at the upper forest edge providing the seed best adapted to the alpine. Here, we test these expectations using a novel combination of common gardens, seeded with two widely distributed subalpine conifers, and climate manipulations replicated at three elevations. Infrared heaters raised temperatures in heated plots, butmore » raised temperatures more in the forest than at or above treeline because strong winds at high elevation reduced heating efficiency. Watering increased season-average soil moisture similarly across sites. Contrary to expectations, warming reduced Engelmann spruce recruitment at and above treeline, as well as in the forest. Warming reduced limber pine first-year recruitment in the forest, but had no net effect on fourth-year recruitment at any site. Watering during the snow-free season alleviated some negative effects of warming, indicating that warming exacerbated water limitations. Contrary to expectations of local adaptation, low-elevation seeds of both species initially recruited more strongly than high-elevation seeds across the elevation gradient, although the low-provenance advantage diminished by the fourth year for Engelmann spruce, likely due to small sample sizes. High- and low-elevation provenances responded similarly to warming across sites for Engelmann spruce, but differently for limber pine. In the context of increasing tree mortality, lower recruitment at all elevations with warming, combined with lower quality, high-provenance seed being most available for colonizing the alpine, portends range contraction for Engelmann spruce. The

Warming and provenance limit tree recruitment across and beyond the elevation range of subalpine forest

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kueppers, Lara M.; Conlisk, Erin; Castanha, Cristina

Climate niche models project that subalpine forest ranges will extend upslope with climate warming. These projections assume that the climate suitable for adult trees will be adequate for forest regeneration, ignoring climate requirements for seedling recruitment, a potential demographic bottleneck. Moreover, local genetic adaptation is expected to facilitate range expansion, with tree populations at the upper forest edge providing the seed best adapted to the alpine. Here, we test these expectations using a novel combination of common gardens, seeded with two widely distributed subalpine conifers, and climate manipulations replicated at three elevations. Infrared heaters raised temperatures in heated plots, butmore » raised temperatures more in the forest than at or above treeline because strong winds at high elevation reduced heating efficiency. Watering increased season-average soil moisture similarly across sites. Contrary to expectations, warming reduced Engelmann spruce recruitment at and above treeline, as well as in the forest. Warming reduced limber pine first-year recruitment in the forest, but had no net effect on fourth-year recruitment at any site. Watering during the snow-free season alleviated some negative effects of warming, indicating that warming exacerbated water limitations. Contrary to expectations of local adaptation, low-elevation seeds of both species initially recruited more strongly than high-elevation seeds across the elevation gradient, although the low-provenance advantage diminished by the fourth year for Engelmann spruce, likely due to small sample sizes. High- and low-elevation provenances responded similarly to warming across sites for Engelmann spruce, but differently for limber pine. In the context of increasing tree mortality, lower recruitment at all elevations with warming, combined with lower quality, high-provenance seed being most available for colonizing the alpine, portends range contraction for Engelmann spruce. The

Multisensor satellite observations of meso- and submesoscale surface circulation in the Liguro-Provençal Basin

NASA Astrophysics Data System (ADS)

Karimova, Svetlana; Alvera-Azcarate, Aida

2017-04-01

Despite great efforts being paid to studying circulation of the Western Mediterranean Basin and the factors triggering bioproductivity of its marine ecosystem, the evidence provided by satellite imagery has not been fully analysed yet. In the present paper, we concentrate our attention on mesoscale and submesoscale circulation features of the Liguro-Provençal Basin captured by satellite radiometer, spectroradiometer, and radar images. Using such a dataset makes it possible to observe the circulation features from a wide spatial range, from the basin scale through mesoscale to the scales of a few kilometers. Mesoscale features in this study are being mostly observed with thermal infrared imagery retrieved by AVHRR and AATSR sensors. Special attention in the work was paid to an analysis of the data coming from a geostationary satellite, namely ones provided by SEVIRI. Due to their uniquely high temporal resolution, such imagery allows observing circulation features in their evolution. During the winter blooming events, surface circulation at meso- to submesoscales in the region of interest was additionally highlighted by images obtained in the visible range. Full spatial resolution images provided by Envisat MERIS, Sentinel-2 MSI, and Landsat TM/ETM+/OLI made the greatest contribution to this part. The smallest scales (namely submesoscale) are being observed with synthetic aperture radar (SAR) imagery provided by Envisat ASAR and Sentinel-1 SAR. During an analysis of SAR images, it was noted that there was strikingly great amount of biogenic surfactants on the water surface in the region of interest. Apparently, low biological productivity typical for the Western Mediterranean ecosystem is not a limiting factor for the formation of surfactant films seen in SAR imagery. This finding though requires further consideration in some other researches, and hereafter we just benefited from the presence of surfactants, because they behave as good tracers of surface currents

Chemical Variation of Silicate Mineral Phases in Lunar Feldspathic Granulitic Impactites: Implications for Thermal Histories and Provenances

NASA Technical Reports Server (NTRS)

Fincke, E. M.; Ryder, G.

2001-01-01

We report on the internal variation and abundances of minor elements of silicate phases in lunar granulitic impactites to assess their thermal histories and the pre-metamorphic provenances of the minerals and the process that assembled the rocks. Additional information is contained in the original extended abstract.

Evaluating Rifean Corridor Closure using Detrital Zircon Sediment Provenance of the Taza-Guercif Basin, Morocco

NASA Astrophysics Data System (ADS)

Pratt, J. R.; Barbeau, D. L.; Emran, A.

2013-12-01

In the late Miocene, the connection between the Mediterranean Sea and Atlantic Ocean was tectonically severed leading to severe evaporative draw down of Mediterranean sea level such that the entire basin was desiccated or near desiccated in an event from ~5.96-5.33 Ma known as the Messinian Salinity Crisis (MSC). The MSC sequestered 6% of global ocean salinity into evaporite deposits, created a deep, dry and hot basin that altered global atmospheric circulation, opened passageways for mammal migration between Europe, Africa and Arabia and ended in the largest flood observed in the geologic record. The combined effects of the Messinian Salinity Crisis make it the most important oceanic event in the last 20 million years, yet despite the dramatic ramifications of the MSC, the exact nature of its cause has remained both elusive and controversial. By examining the sedimentary provenance of Rifean Corridor, this research evaluates the progression of corridor closure and the tectonic context of the initiation of the Messinian Salinity Crisis. The difficulty in evaluating the progression of closure is due to the tectonic complexity of the Africa-Eurasia convergent plate boundary in north-central Morocco. The shortening associated with the tectonic convergence is accommodated by two genetically and tectonically distinct orogenic systems, the Rif and Atlas mountain belts, which lie in juxtaposition to the slab-rollback dominated Alboran Sea. The basins of the Rifean corridor lie between these two orogens and as such shortening and uplift associated with either or both ranges could be the cause of the corridor closure. Several hypotheses have been posited for the tectonic controls on basin emergence including slab-rollback related delamination on the Alboran margin, domal uplift of the Middle Atlas as well as a more traditional propagation of the Rifean orogenic wedge. This research provides the first quantitative provenance data for the Taza-Guercif basin in the form of LA

Proven practices for reducing aggressive and noncompliant behaviors exhibited by young children at home and at school.

PubMed

Vanderheyden, A; Witt, J C

2000-10-01

One of the single most powerful predictors of aggressive and noncompliant behaviors exhibited in early childhood is coercive parent-child interaction. Coercive parent-child interaction has been linked to multiple negative outcomes in the lives of children. When children learn to relate to their parents and the world in the context of coercive interaction, they are likely to experience significant deficits in the prosocial skills critical to school success. These children are much more likely to experience school failure and teacher and peer rejection. Further, when noncompliant and aggressive children enter school, they are most frequently exposed to a series of ineffective and increasingly restrictive treatments. Proven strategies exist to teach parents and children prosocial ways of interacting and to address these problems in the classroom, but in many cases these types of services are not easily accessible or routinely available. This paper makes recommendations for identifying effective, proven treatment strategies when practitioners observe coercive parent-child interaction or child noncompliance and aggression.

Survival and growth of white ash families and provenances 15 years after establishment in West Virginia

Treesearch

Thomas M. Schuler

1994-01-01

The survival, growth, and stem form of 45 white ash (Fraxinus americana L.) families nested within 22 provenances were evaluated 15 years after establishment in north central West Virginia. Geographic family origins encompassed a wide area in the eastern and central United States, including locations from Maine in the North to Mississippi in the South to Nebraska in...

Enhanced provenance interpretation using combined U-Pb and (U-Th)/He double dating of detrital zircon grains from lower Miocene strata, proximal Gulf of Mexico Basin, North America

NASA Astrophysics Data System (ADS)

Xu, Jie; Stockli, Daniel F.; Snedden, John W.

2017-10-01

Detrital zircon U-Pb analysis is an effective approach for investigating sediment provenance by relating crystallization age to potential crystalline source terranes. Studies of large passive margin basins, such as the Gulf of Mexico Basin, that have received sediment from multiple terranes with non-unique crystallization ages or sedimentary strata, benefit from additional constraints to better elucidate provenance interpretation. In this study, U-Pb and (U-Th)/He double dating analyses on single zircons from the lower Miocene sandstones in the northern Gulf of Mexico Basin reveal a detailed history of sediment source evolution. U-Pb age data indicate that most zircon originated from five major crystalline provinces, including the Western Cordillera Arc (<250 Ma), the Appalachian-Ouachita orogen (500-260 Ma), the Grenville (1300-950 Ma) orogen, the Mid-Continent Granite-Rhyolite (1500-1300 Ma), and the Yavapai-Mazatzal (1800-1600 Ma) terranes as well as sparse Pan-African (700-500 Ma) and Canadian Shield (>1800 Ma) terranes. Zircon (U-Th)/He ages record tectonic cooling and exhumation in the U.S. since the Mesoproterozoic related to the Grenville to Laramide Orogenies. The combined crystallization and cooling information from single zircon double dating can differentiate volcanic and plutonic zircons. Importantly, the U-Pb-He double dating approach allows for the differentiation between multiple possible crystallization-age sources on the basis of their subsequent tectonic evolution. In particular, for Grenville zircons that are present in all of lower Miocene samples, four distinct zircon U-Pb-He age combinations are recognizable that can be traced back to four different possible sources. The integrated U-Pb and (U-Th)/He data eliminate some ambiguities and improves the provenance interpretation for the lower Miocene strata in the northern Gulf of Mexico Basin and illustrate the applicability of this approach for other large-scale basins to reconstruct sediment

Provenance of sediments from Sumatra, Indonesia - Insights from detrital U-Pb zircon geochronology, heavy mineral analyses and Raman spectroscopy

NASA Astrophysics Data System (ADS)

Liebermann, C.; Hall, R.; Gough, A.

2017-12-01

The island of Sumatra is situated at the southwestern margin of the Indonesian archipelago. Although it is the sixth largest island in the world, the geology of the Sumatra sedimentary basins and their underlying basement is relatively poorly understood in terms of their provenance. This work is a multi-proxy provenance study utilizing U-Pb detrital zircon dating by LA-ICP-MS combined with optical and Raman spectroscopy-based heavy mineral analysis. It will help to unravel the stratigraphy of Sumatra, contribute to paleogeographic reconstruction of western SE Asia, and aid a wider understanding of Sumatran petroleum plays. Thin section analyses, heavy mineral assemblages, and >3500 concordant U-Pb zircon ages, from samples acquired during two fieldwork seasons indicate a mixed provenance for Cenozoic sedimentary formations, including both local igneous sources and mature basement rocks. Characteristic Precambrian zircon age spectra are found in all analysed Cenozoic sedimentary strata. These can be correlated with zircon age populations found in Sumatran basement rocks; Neoproterozoic and Mesoproterozoic age groups are dominant (c. 500-600 Ma, c. 850-1000 Ma, c. 1050-1200 Ma). Paleoproterozoic to Archaean zircons occur as minor populations. The Phanerozoic age spectra of the Cenozoic formations are characterised by distinct Carboniferous, Permo-Triassic, and Jurassic-Cretaceous zircon populations. Permo-Triassic zircons are interpreted to come from granitoids in the Malay peninsula or Sumatra itself. Eocene to Lower Miocene strata are characterised by ultrastable heavy minerals such as zircon, tourmaline, and rutile, which together with garnet, suggest the principal sources were igneous and metamorphic basement rocks. Cenozoic zircons appear only from the Middle Miocene onwards. This change is interpreted to indicate a new contribution from a local volcanic arc, and is supported by the occurrence of unstable heavy minerals such as apatite and clinopyroxene, and the

Epidemic microclusters of blood-culture proven sepsis in very-low-birth weight infants: experience of the German Neonatal Network.

PubMed

Härtel, Christoph; Faust, Kirstin; Avenarius, Stefan; Bohnhorst, Bettina; Emeis, Michael; Gebauer, Corinna; Groneck, Peter; Heitmann, Friedhelm; Hoehn, Thomas; Hubert, Mechthild; Kribs, Angela; Küster, Helmut; Laux, Reinhard; Mögel, Michael; Müller, Dirk; Olbertz, Dirk; Roll, Claudia; Siegel, Jens; Stein, Anja; Vochem, Matthias; Weller, Ursula; von der Wense, Axel; Wieg, Christian; Wintgens, Jürgen; Hemmelmann, Claudia; Simon, Arne; Herting, Egbert; Göpel, Wolfgang

2012-01-01

We evaluated blood culture-proven sepsis episodes occurring in microclusters in very-low-birth-weight infants born in the German Neonatal Network (GNN) during 2009-2010. Thirty-seven centers participated in GNN; 23 centers enrolled ≥50 VLBW infants in the study period. Data quality was approved by on-site monitoring. Microclusters of sepsis were defined as occurrence of at least two blood-culture proven sepsis events in different patients of one center within 3 months with the same bacterial species. For microcluster analysis, we selected sepsis episodes with typically cross-transmitted bacteria of high clinical significance including gram-negative rods and Enterococcus spp. In our cohort, 12/2110 (0.6%) infants were documented with an early-onset sepsis and 235 late-onset sepsis episodes (≥72 h of age) occurred in 203/2110 (9.6%) VLBW infants. In 182/235 (77.4%) late-onset sepsis episodes gram-positive bacteria were documented, while coagulase negative staphylococci were found to be the most predominant pathogens (48.5%, 95%CI: 42.01-55.01). Candida spp. and gram-negative bacilli caused 10/235 (4.3%, 95%CI: 1.68% -6.83%) and 43/235 (18.5%) late-onset sepsis episodes, respectively. Eleven microclusters of blood-culture proven sepsis were detected in 7 hospitals involving a total 26 infants. 16/26 cluster patients suffered from Klebsiella spp. sepsis. The median time interval between the first patient's Klebsiella spp. sepsis and cluster cases was 14.1 days (interquartile range: 1-27 days). First patients in the cluster, their linked cases and sporadic sepsis events did not show significant differences in short term outcome parameters. Microclusters of infection are an important phenomenon for late-onset sepsis. Most gram-negative cluster infections occur within 30 days after the first patient was diagnosed and Klebsiella spp. play a major role. It is essential to monitor epidemic microclusters of sepsis in surveillance networks to adapt clinical practice

Crystallization of the Zagami Shergottite: An Experimental Study

NASA Technical Reports Server (NTRS)

Lofgren, Gary E.; McCoy, Timothy J.

2000-01-01

Spherulites are usually rounded or spherical objects found in rhyolitic obsidian. They usually comprise acicular crystals of alkali feldspar that radiate from a single point. The radiating array of crystalline fibers typically have a similar crystallographic orientation such that a branch fiber departs slightly but appreciably from that of its parent fiber. Individual fibers range from 1 to several micrometers in diameter. The spherulites most likely form by heterogeneous nucleation on microscopic seed crystals, bubbles, or some other surface at high degrees of supercooling. They grow very rapidly stabilizing their fibrous habit and typically range in size from microscopic to a few cm in diameter.

Data Publication: Addressing the Issues of Provenance, Attribution, Citation, and Accessibility

NASA Astrophysics Data System (ADS)

Raymond, L. M.; Chandler, C. L.; Lowry, R. K.; Urban, E. R.; Moncoiffe, G.; Pissierssens, P.; Norton, C.

2010-12-01

Motivated by publisher and funding agency mandates, and a desire to properly attribute data sets to originating investigators, the Marine Biological Laboratory/Woods Hole Oceanographic Institution (MBLWHOI) Library and a team of data managers and scientists are collaborating with representatives from the Scientific Committee on Oceanic Research (SCOR) and the International Oceanographic Data and Information Exchange (IODE) of the Intergovernmental Oceanographic Commission. The work is inspired by a June 2008 SCOR/IODE Workshop on Data Publishing. The goal is to identify best practices for tracking data provenance and clearly attributing credit to data collectors/providers for data published in journal articles. To improve efficacy of data directly associated with a scientific article those data must be discoverable, citeable and freely available on the Internet. Resources, standards, and workflows must be defined to support publisher and funding agency mandates. For the data to be discoverable, appropriate metadata, defined using community accepted metadata standards, must be associated with the data source. Data will be made citeable by the assignment of a persistent identifier as well as provenance and attribution metadata. The availability of the data will be assured by submission to a data repository that has stability and permanence. In April 2010, project participants were challenged to develop and execute pilot projects related to two use cases in which: (1) data held by data centers are packaged and served in formats that can be cited and (2) data related to traditional journal articles are assigned persistent identifiers referred to in the articles and stored in institutional repositories, such as DSpace. The MBLWHOI Library team chose to focus on data that support published articles, particularly the data used to create the figures and tables. Several published papers were identified and used to test the MBLWHOI Library model based on open archive

Late Pleistocene-Holocene deglaciation history in the Baffin Bay from radiogenic isotope provenance studies

NASA Astrophysics Data System (ADS)

Kirillova, V.; Lucassen, F.; Kasemann, S.

2016-12-01

Ice sheets dynamics as well as corresponding meltwater pulses and iceberg calving events play a major role in the delivery and dispersion of continental detritus into the ocean in glaciated environments. To trace Greenland, and potentially, Innuitian and Laurentian ice sheet history and freshwater routing during late Pleistocene to Holocene climate transition, we generate strontium (Sr), neodymium (Nd) and lead (Pb) isotope records as proxies for the provenance of continental detritus on sediment cores from the Baffin Bay: GeoTÜ SL 170, from the Greenland side, covering the last 18.000 years of climate history and GeoTÜ SL 174, close to the western coast, covering 48.000 years. For SL 170, a pronounced shift can be observed in all three isotope systems at 12 ka, what coincides with the Younger Dryas cold event. 87Sr/86Sr is around 0.74 before the event and reaches up to 0.72 during it. Nd isotope composition (IC) changes from ɛNd -32 to -26, and the 206Pb/204Pb values range from 18 to 17. The shift suggests a change in the continental sources from the Archean Southern West Greenland to a slightly younger Proterozoic source of the Nagssugtoqidian Mobile Belt in the Central West Greenland. These results allow us to estimate patterns and timings of deglaciation for different regions of the western Greenland Ice Sheet. In core SL174 variations in ɛNd ( -24 to -30) and 206Pb/204Pb ( 17 to 19) provide no clear evidence for a change of the sediment source within the Younger Dryas, despite the similar range of the values as in core SL 170. 87Sr/86Sr is more radiogenic than in SL 170, reaching values of up to 0.75, but without a systematic relation to the deposition age. Since SL 174 core is located closer to the coast and to the LGM (last glacial maximum) ice sheet border, it was possibly exposed to the direct influence of the marine-terminating ice sheet, which supplied material from enhanced glacial and subglacial erosion. Therefore, radiogenic isotope results for

Test of a natural enemy hypothesis on plant provenance: Spider abundance in native and exotic ornamental landscapes

USDA-ARS?s Scientific Manuscript database

There is heightened interest in effects that the provenance of plants in the landscape has on animals inhabiting them. There is an increasing body of research on insect herbivores, but less attention has been paid to arthropod natural enemies. This question is of great interest for designers of urba...

Incidence and natural history of challenge-proven cow's milk allergy in European children--EuroPrevall birth cohort.

PubMed

Schoemaker, A A; Sprikkelman, A B; Grimshaw, K E; Roberts, G; Grabenhenrich, L; Rosenfeld, L; Siegert, S; Dubakiene, R; Rudzeviciene, O; Reche, M; Fiandor, A; Papadopoulos, N G; Malamitsi-Puchner, A; Fiocchi, A; Dahdah, L; Sigurdardottir, S Th; Clausen, M; Stańczyk-Przyłuska, A; Zeman, K; Mills, E N C; McBride, D; Keil, T; Beyer, K

2015-08-01

Cow's milk allergy (CMA) is one of the most commonly reported childhood food problems. Community-based incidence and prevalence estimates vary widely, due to possible misinterpretations of presumed reactions to milk and differences in study design, particularly diagnostic criteria. Children from the EuroPrevall birth cohort in 9 European countries with symptoms possibly related to CMA were invited for clinical evaluation including cows' milk-specific IgE antibodies (IgE), skin prick test (SPT) reactivity and double-blind, placebo-controlled food challenge. Across Europe, 12 049 children were enrolled, and 9336 (77.5%) were followed up to 2 years of age. CMA was suspected in 358 children and confirmed in 55 resulting in an overall incidence of challenge-proven CMA of 0.54% (95% CI 0.41-0.70). National incidences ranged from 1% (in the Netherlands and UK) to <0.3% (in Lithuania, Germany and Greece). Of all children with CMA, 23.6% had no cow's milk-specific IgE in serum, especially those from UK, the Netherlands, Poland and Italy. Of children with CMA who were re-evaluated one year after diagnosis, 69% (22/32) tolerated cow's milk, including all children with non-IgE-associated CMA and 57% of those children with IgE-associated CMA. This unique pan-European birth cohort study using the gold standard diagnostic procedure for food allergies confirmed challenge-proven CMA in <1% of children up to age 2. Affected infants without detectable specific antibodies to cow's milk were very likely to tolerate cow's milk one year after diagnosis, whereas only half of those with specific antibodies in serum 'outgrew' their disease so soon. © 2015 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Bentonite chemical features as proxy of late Cretaceous provenance changes: A case study from the Western Interior Basin of Canada

NASA Astrophysics Data System (ADS)

Fanti, Federico

2009-05-01

Bentonite beds are fairly common in both marine and terrestrial Upper Cretaceous (Campanian-Maastrichtian) deposits of the Western Interior Basin of western Canada and northwestern United States. A detailed stratigraphic, sedimentologic, geochemical (X-ray fluorescence), and mineralogical (X-ray diffraction) study of twenty-one bentonites from the Puskwaskau and Wapiti formations in the Grande Prairie area (west-central Alberta, Canada) is here presented. Major and trace-element concentrations from altered volcanic ashes document the presence in the study area of predominantly trachyandesitic and rhyolitic volcanogenic products, resulted from intense volcanic arc to within-plate pyroclastic activity. Concentration values of high field strength elements (HFSE) and selected large ion lithophile elements (LILE) (e.g. Nb, Zr, Th, and Y) obtained by X-ray fluorescence spectroscopy strongly support the presence of multiple volcanic sources. Integrated paleoenvironmental and geochemical criteria for provenance determination indicate a bimodal occurrence of basic and acid volcanic products interpreted as reflection of source areas characterized by different tectonic setting and magmatic composition. A comparative analysis of geochemical compositions between Grande Prairie bentonites and 30 known volcanic beds from central and southern Alberta, Manitoba and Montana 1. documents a trend toward more acidic and alkali-depleted volcanic products during the late Campanian-early Maastrichtian interval, and 2. suggests a well constrained stratigraphic and geographic subdivision of the non-marine successions of the foreland basin on the basis of geochemical characteristic of volcanic ash beds. Furthermore, geochemical "fingerprints" of several decimeter to meter thick bentonite beds have been coupled with volcanic ash subsurface signature in order to investigate their role as marker beds. This multiple-approach provides a reliable tool for basin-scale identification and correlation

Unraveling multiple provenance areas using sandstone petrofacies and geochemistry: An example in the southern flank of the Golfo San Jorge Basin (Patagonia, Argentina)

NASA Astrophysics Data System (ADS)

Limarino, Carlos Oscar; Giordano, Sergio Roberto

2016-03-01

The aim of this paper is to study the provenance of Late Cretaceous sandstones deposited along the south flank of the Golfo San Jorge Basin. For this purpose, detrital modes of three hundred thirty-seven sandstone samples collected in the Mina del Carmen, Bajo Barreal, and Cañadón Seco Formations were studied in ten oil fields. According to the modal composition of the sandstones, six petrofacies were defined allowing the identification of not only principal, but also secondary provenance areas. The QVM and VQM petrofacies are more than 20% metamorphic, sedimentary, and polycrystalline quartz clasts (Lm + Ls + Qpg > 20%), evidencing a secondary signal of basement supply masked by a predominant volcanic provenance. The petrofacies VP and VF are characterized by Lm + Ls + Qpg <20% and more than 20% total feldspar (Pm + Om >20%.), which indicate a supply of sediment from volcanic terrains and scarce derivation of materials from basement rocks. Based on the plagioclase/k-feldspar ratio, the VF petrofacies is interpreted to be dominated by the supply of sand grains from the Andean volcanic-arc, while VP is supposed have originated through the erosion of intermediate volcanic rock outcroppings in the Macizo del Deseado. Finally, both the VQ and QV petrofacies show Lm + Ls + Qpg <20% and Pm + Om<20%, indicating a provenance of volcanic areas coupled with minor contributions from basement rocks. During the Late Cretaceous, the Golfo San Jorge Basin underwent a sag phase that was characterized by very scarce volcanism and tectonic activity. Although these conditions did not favor defined patterns in the vertical stacking of petrofacies, the sandstones exhibit remarkable changes in their regional distribution, which were determined by the paleogeography of the basin and differences in basement composition within the source areas. Finally, a paleogeographic model for sediment circulation in the basin is proposed. This model recognizes the main fluvial dispersal trends that

ProvenCare-Psoriasis: A disease management model to optimize care.

PubMed

Gionfriddo, Michael R; Pulk, Rebecca A; Sahni, Dev R; Vijayanagar, Sonal G; Chronowski, Joseph J; Jones, Laney K; Evans, Michael A; Feldman, Steven R; Pride, Howard

2018-03-15

There are a variety of evidence-based treatments available for psoriasis. The transition of this evidence into practice is challenging. In this article, we describe the design of our disease management approach for Psoriasis (ProvenCare®) and present preliminary evidence of the effect of its implementation. In designing our approach, we identified three barriers to optimal care: 1) lack of a standardized and discrete disease activity measure within the electronic health record, 2) lack of a system-wide, standardized approach to care, and 3) non-uniform financial access to appropriate non-pharmacologic treatments. We implemented several solutions, which collectively form our approach. We standardized the documentation of clinical data such as body surface area (BSA), created a disease management algorithm for psoriasis, and aligned incentives to facilitate the implementation of the algorithm. This approach provides more coordinated, cost effective care for psoriasis, while being acceptable to key stakeholders. Future work will examine the effect of the implementation of our approach on important clinical and patient outcomes.

Geochemical compositions of Neoproterozoic to Lower Palaeozoic (?) shales and siltstones in the Volta Basin (Ghana): Constraints on provenance and tectonic setting

NASA Astrophysics Data System (ADS)

Amedjoe, Chiri G.; Gawu, S. K. Y.; Ali, B.; Aseidu, D. K.; Nude, P. M.

2018-06-01

Many researchers have investigated the provenance and tectonic setting of the Voltaian sediments using the geochemistry of sandstones in the basin. The shales and siltstones in the basin have not been used much in the provenance studies. In this paper, the geochemistry of shales and siltstones in the Kwahu Group and Oti Group of the Voltaian Supergroup from Agogo and environs in the southeastern section of the basin has constrained the provenance and tectonic setting. Trace element ratios La/Sc, Th/Sc and Cr/Th and REEs sensitive to average source compositions revealed sediments in the shales and siltstones may mainly be from felsic rocks, though contributions from old recycled sediments and some andesitic rock sediments were identified. The felsic rocks may be granites and/or granodiorites. Some intermediate rocks of andesitic composition are also identified, while the recycled sediments were probably derived from the basement metasedimentary rocks. The enrichment of light REE (LaN/YbN c. 7.47), negative Eu anomalies (Eu/Eu* c. 0.59), and flat heavy REE chondrite-normalized patterns, denote an upper-continental-crustal granitic source materials for the sediments. Trace-element ternary discriminant diagrams reveal passive margin settings for sediments, though some continental island arc settings sediments were also depicted. Mixing calculations based on REE concentrations and modeled chondrite-normalized REE patterns suggest that the Birimian basement complex may be the source of detritus in the Voltaian Basin. REEs are more associated with shales than siltstones. On this basis chondrite-normalized REE patterns show that shale lithostratigraphic units may be distinguished from siltstone lithostratigraphic units. The significant variability in shales elemental ratios can therefore be used to distinguish between shales of the Oti Group from that of the Kwahu Group.

Transfers of proven oil and gas properties from individuals to controlled corporations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cash, L.S.; Dickens, T.L.

1985-12-01

Code Section 613A(c) (10) sets forth an exception, for transfers by individuals to their controlled corporations, to the general rule of section 613A(c)(9) denying percentage depletion to transferees of proven oil and gas properties. The proposed regulations attempt to provide guidelines to help taxpayers comply, and, although these regulations are not all-inclusive, they should be helpful to taxpayers who must rely on these provisions to prevent the loss of deductions for percentage depletion. Because of some apparent ambiguities in this area of the Internal Revenue Code and Treasury's inability to flesh out these ambiguities in its proposed regulations, affected taxpayersmore » should be cautious. 2 tables.« less

The case for physician assisted suicide: how can it possibly be proven?

PubMed Central

Dahl, E; Levy, N

2006-01-01

In her paper, The case for physician assisted suicide: not (yet) proven, Bonnie Steinbock argues that the experience with Oregon's Death with Dignity Act fails to demonstrate that the benefits of legalising physician assisted suicide outweigh its risks. Given that her verdict is based on a small number of highly controversial cases that will most likely occur under any regime of legally implemented safeguards, she renders it virtually impossible to prove the case for physician assisted suicide. In this brief paper, we suggest some ways that may enable us to weigh the risks and benefits of legalisation more fairly and, hopefully, allow us to close the case for physician assisted suicide. PMID:16731731

Archaeometric characterization and provenance determination of sculptures and architectural elements from Gerasa, Jordan

NASA Astrophysics Data System (ADS)

Al-Bashaireh, Khaled

2018-02-01

This study aims at the identification of the provenance of white marble sculptures and architectural elements uncovered from the archaeological site of Gerasa and neighboring areas, north Jordan. Most of the marbles are probably of the Roman or Byzantine periods. Optical microscopy, X-ray diffraction, and mass spectrometry were used to investigate petrographic, mineralogical and isotopic characteristics of the samples, respectively. Analytical results were compared with the main reference databases of known Mediterranean marble quarries exploited in antiquity. The collected data show that the most likely main sources of the sculptures were the Greek marble quarries of Paros-2 (Lakkoi), Penteli (Mount Pentelikon, Attica), and Thasos-3 (Thasos Island, Cape Vathy, Aliki); the Asia Minor marble quarries of Proconessus-1 (Marmara) and Aphrodisias (Aphrodisias); and the Italian quarry of Carrara (Apuan Alps). Similarly, the Asia Minor quarries of the fine-grained Docimium (Afyon) and the coarse-grained Proconessus-1 (Marmara) and Thasos-3 are the most likely sources of the architectural elements. The results agree with published data on the wide use of these marbles for sculpture and architectural elements.

Using Detrital Zircon Geochronology to Constrain Paleogene Provenance and Its Relationship to Rifting in the Zhu 1 Depression, Pearl River Mouth Basin, South China Sea

NASA Astrophysics Data System (ADS)

Wang, Wei; Ye, Jiaren; Bidgoli, Tandis; Yang, Xianghua; Shi, Hesheng; Shu, Yu

2017-11-01

Paleogene syn-rift successions in the South China Sea are poorly understood and systematic provenance analysis, which could provide clues to their history, is lacking. Here we report 409 new concordant U-Pb ages from detrital zircons separated from the Paleogene Wenchang, Enping, and Zhuhai formations in the Zhu 1 depression, Pearl River Mouth Basin. The new data, combined with the published age data from the region, document changes in the provenance of syn-rift successions. Detrital zircons from the Eocene Wenchang Formation are unimodal, with Jurassic-Cretaceous (180-80 Ma) ages making up >80% of grains. The ages are consistent with the geochronology of intrabasinal highs, dominated by igneous rocks emplaced during the Yanshanian orogeny, and suggest local provenance. By contrast, detrital zircons from the upper Eocene to lower Oligocene Enping Formation form three well-recognized age-clusters, with peaks at 150, 254, and 438 Ma that match documented tectonomagmatism in South China Block (SCB). Combined with increasing numbers of Precambrian zircons, the data suggest increasing influence of regional provenance of the SCB. Similar age peaks are also recognized from the limited number of zircons analyzed from the upper Oligocene Zhuhai Formation and comparability with modern shelf and river sediment indicates the unit was mainly sourced from the SCB and likely transported by a paleo-Pearl River. We infer that the change in provenance, from local uplifts within the Zhu 1 to the SCB, is related to distinct phases of PRMB rift development; however, later changes are best explained by SCB drainage evolution.

Absolute age Determinations on Diamond by Radioisotopic Methods: NOT the way to Accurately Identify Diamond Provenance

NASA Astrophysics Data System (ADS)

Shirey, S. B.

2002-05-01

Gem-quality diamond contains such low abundances of parent-daughter radionuclides that dating the diamond lattice directly by isotopic measurements has been and will be impossible. Absolute ages on diamonds typically are obtained through measurements of their syngenetic mineral inclusions: Rb-Sr in garnet; Sm-Nd in garnet and pyroxene; Re-Os and U-Th-Pb in sulfide; K-Ar in pyroxene; and U-Pb in zircon. The application of the first two isotope schemes in the list requires putting together many inclusions from many diamonds whereas the latter isotope schemes permit ages on single diamonds. The key limitations on the application of these decay pairs are the availability and size of the inclusions, the abundance levels of the radionuclides, and instrumental sensitivity. Practical complications of radioisotope dating of inclusions are fatal to the application of the technique for diamond provenance. In all mines, the ratio of gem-quality diamonds to stones with datable inclusions is very high. Thus there is no way to date the valuable, marketable stones that are part of the conflict diamond problem, just their rare, flawed cousins. Each analysis destroys the diamond host plus the inclusion and can only be carried out in research labs by highly trained scientists. Thus, these methods can not be automated or applied to the bulk of diamond production. The geological problems with age dating are equally fatal to its application to diamond provenance. From the geological perspective, for age determination to work as a tool for diamond provenance studies, diamond ages would have to be specific to particular kimberlites or kimberlite fields and different between fields. The southern African Kaapvaal-Zimbabwe Craton and Limpopo Mobile Belt is the only cratonic region where age determinations have been applied on a large enough scale to a number of kimberlites to illustrate the geological problems in age measurements for diamond provenance. However, this southern African example

Possibilities and limitations of using historic provenance tests to infer forest species growth responses to climate change

Treesearch

Laura P. Leites; Gerald E. Rehfeldt; Andrew P. Robinson; Nicholas L. Crookston; Barry Jaquish

2012-01-01

Under projected changes in global climate, the growth and survival of existing forests will depend on their ability to adjust physiologically in response to environmental change. Quantifying their capacity to adjust and whether the response is species- or population-specific is important to guide forest management strategies. New analyses of historic provenance tests...

Indicators of Provenance Weathering: Li and δ7Li in Mudrocks from the British Caledonides

NASA Astrophysics Data System (ADS)

Qiu, L.; Rudnick, R. L.; McDonough, W. F.; Merriman, R. J.

2008-12-01

from average shale-like patterns to less LREE-enriched patterns. The heterogeneity within the Southern Uplands mudrocks points to a mixed provenance that includes juvenile crustal materials (lower [Li], ɛNd and Th/U, higher δ7Li), likely derived from the arc, as well as more weathered cratonic detritus. Mudrocks from the southern Lake District deposited in a foreland basin, exhibit geochemical characteristics intermediate between the northern Lake District and the Southern Uplands mudrocks indicating their derivation from a mixed source. Our study shows that Li and δ7Li can provide addition information on the nature of the provenance of mudrocks.

Academic Provenance: Mapping Geoscience Students' Academic Pathways to their Career Trajectories

NASA Astrophysics Data System (ADS)

Houlton, H. R.; Gonzales, L. M.; Keane, C. M.

2011-12-01

Targeted recruitment and retention efforts for the geosciences have become increasingly important with the growing concerns about program visibility on campuses, and given that geoscience degree production remains low relative to the demand for new geoscience graduates. Furthermore, understanding the career trajectories of geoscience degree recipients is essential for proper occupational placement. A theoretical framework was developed by Houlton (2010) to focus recruitment and retention efforts. This "pathway model" explicitly maps undergraduate students' geoscience career trajectories, which can be used to refine existing methods for recruiting students into particular occupations. Houlton's (2010) framework identified three main student population groups: Natives, Immigrants or Refugees. Each student followed a unique pathway, which consisted of six pathway steps. Each pathway step was comprised of critical incidents that influenced students' overall career trajectories. An aggregate analysis of students' pathways (Academic Provenance Analysis) showed that different populations' pathways exhibited a deviation in career direction: Natives indicated intentions to pursue industry or government sectors, while Immigrants intended to pursue academic or research-based careers. We expanded on Houlton's (2010) research by conducting a follow-up study to determine if the original participants followed the career trajectories they initially indicated in the 2010 study. A voluntary, 5-question, short-answer survey was administered via email. We investigated students' current pathway steps, pathway deviations, students' goals for the near future and their ultimate career ambitions. This information may help refine Houlton's (2010) "pathway model" and may aid geoscience employers in recruiting the new generation of professionals for their respective sectors.

Deglacial dust provenance changes in the Eastern Equatorial Pacific and implications for ITCZ movement

NASA Astrophysics Data System (ADS)

Xie, Ruifang C.; Marcantonio, Franco

2012-02-01

The provenance of eolian dust supplied to deep-sea sediments has the potential to offer insights into changes in past atmospheric circulation. Specifically, measuring temporal changes in dust provenance can shed light on changes in the mean position of the Intertropical Convergence Zone (ITCZ), a region acting as a barrier separating wind-blown material derived from northern versus southern hemisphere sources. Here we have analyzed Nd, Sr, and Pb isotope ratios in the operationally-defined detrital component extracted from deep-sea sediments in the eastern equatorial Pacific (EEP) along a meridional transect at 110°W from 3°S to 7°N (ODP Leg 138, sites 848-853). Sr isotope results show that barite Sr has a significant influence on 87Sr/86Sr isotope ratios of samples in the upwelling zone of the EEP. However, sites located >3° or more away from the equator (sites 852 and 853) are believed to not be affected by barite Sr and provide useful detrital Sr signals. 208Pb/206Pb and 207Pb/206Pb ratios in all cores fall into the Pb-isotope space of five potential dust sources (Asia, North and Central/South America, Sahara, and Australia), with no distinct isotopic fingerprinting of the dominant source(s). ɛNd values were most valuable for discerning detrital source provenance, and their values at all sites, ranging from -5.46 to -3.25, were more unradiogenic for sediments deposited during the last glacial than for those deposited during the Holocene. There are distinct latitudinal trends in the ɛNd values, with more radiogenic values further south and less radiogenic values further north, excluding site 848. This distinction holds true for both Holocene and last glacial periods. For the most southerly site, 848, we invoke, for the first time, a distinct southern hemisphere Australian source as being responsible for the unradiogenic Nd isotope ratios. Both average last glacial and Holocene ɛNd values show similar sharp gradients along the transect between 5.29°N and 2

Provenance of Des Moines lobe till records ice-stream catchment evolution during Laurentide deglaciation

USGS Publications Warehouse

Lusardi, B.A.; Jennings, C.E.; Harris, K.L.

2011-01-01

Mapping and analysis of deposits of the Des Moines lobe of the Laurentide Ice Sheet, active after the Last Glacial Maximum (LGM), reveal several texturally and lithologically distinct tills within what had been considered to be a homogeneous deposit. Although the differences between tills are subtle, minor distinctions are predictable and mappable, and till sheets within the area covered by the lobe can be correlated for hundreds of kilometres parallel to ice flow. Lateral till-sheet contacts are abrupt or overlap in a narrow zone, coincident with a geomorphic discontinuity interpreted to be a shear margin. Till sheets 10 to 20m thick show mixing in their lower 2 to 3m. We suggest that: (i) lithologically distinct till sheets correspond to unique ice-stream source areas; (ii) the sequence of tills deposited by the Des Moines lobe was the result of the evolution and varying dominance of nearby and competing ice streams and their tributaries; and (iii) in at least one instance, more than one ice stream simultaneously contributed to the lobe. Therefore the complex sequence of tills of subtly different provenances, and the unconformities between them record the evolution of an ice-catchment area during Laurentide Ice Sheet drawdown. Till provenance data suggest that, after till is created in the ice-stream source area, the subglacial conditions required for transporting till decline and incorporation of new material is limited. ?? 2011 The Authors. Boreas ?? 2011 The Boreas Collegium.

The LapSim virtual reality simulator: promising but not yet proven.

PubMed

Fairhurst, Katherine; Strickland, Andrew; Maddern, Guy

2011-02-01

The acquisition of technical skills using surgical simulators is an area of active research and rapidly evolving technology. The LapSim is a virtual reality simulator that currently allows practice of basic laparoscopic skills and some procedures. To date, no reviews have been published with reference to a single virtual reality simulator. A PubMed search was performed using the keyword "LapSim," with further papers identified from the citations of original search articles. Use of the LapSim to develop surgical skills has yielded overall results, although inconsistencies exist. Data regarding the transferability of learned skills to the operative environment are encouraging as is the validation work, particularly the use of a combination of measured parameters to produce an overall comparative performance score. Although the LapSim currently does not have any proven significant advantages over video trainers in terms of basic skills instruction and although the results of validation studies are variable, the potential for such technology to have a huge impact on surgical training is apparent. Work to determine standardized learning curves and proficiency criteria for different levels of trainees is incomplete. Moreover, defining which performance parameters measured by the LapSim accurately determine laparoscopic skill is complex. Further technological advances will undoubtedly improve the efficacy of the LapSim, and the results of large multicenter trials are anticipated.

Ten years of provenance research at Michigan State University and the next steps in tree improvement

Treesearch

Jonathan W. Wright

1970-01-01

Michigan State University's first provenance test was started in 1958, a little more than a decade ago. Tests in three more species were started in 1959. Others have been added until the list of species covered now totals 28. There are such experiments in eight species of pine, six of elm, three of spruce, two each of larch and the true firs, and one each of...

Lab and Field Warming Similarly Advance Germination Date and Limit Germination Rate for High and Low Elevation Provenances of Two Widespread Subalpine Conifers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kueppers, Lara; Faist, Akasha; Ferrenberg, Scott

Accurately predicting upslope shifts in subalpine tree ranges with warming requires understanding how future forest populations will be affected by climate change, as these are the seed sources for new tree line and alpine populations. Early life history stages are particularly sensitive to climate and are also influenced by genetic variation among populations. Here, we tested the climate sensitivity of germination and initial development for two widely distributed subalpine conifers, using controlled-environment growth chambers with one temperature regime from subalpine forest in the Colorado Rocky Mountains and one 5 °C warmer, and two soil moisture levels. We also tracked germinationmore » rate and timing, rate of seedling development, and seedling morphology for two seed provenances separated by ~300 m elevation. Warming advanced germination timing and initial seedling development by a total of ~2 weeks, advances comparable to mean differences between provenances. Advances were similar for both provenances and species; however, warming reduced the overall germination rate, as did low soil moisture, only for Picea engelmannii. A three-year field warming and watering experiment planted with the same species and provenances yielded responses qualitatively consistent with the lab trials. Altogether these experiments indicate that in a warmer, drier climate, P. engelmannii germination, and thus regeneration, could decline, which could lead to declining subalpine forest populations, while Pinus flexilis forest populations could remain robust as a seed source for upslope range shifts.« less

Lab and Field Warming Similarly Advance Germination Date and Limit Germination Rate for High and Low Elevation Provenances of Two Widespread Subalpine Conifers

DOE PAGES

Kueppers, Lara; Faist, Akasha; Ferrenberg, Scott; ...

2017-11-11

Accurately predicting upslope shifts in subalpine tree ranges with warming requires understanding how future forest populations will be affected by climate change, as these are the seed sources for new tree line and alpine populations. Early life history stages are particularly sensitive to climate and are also influenced by genetic variation among populations. Here, we tested the climate sensitivity of germination and initial development for two widely distributed subalpine conifers, using controlled-environment growth chambers with one temperature regime from subalpine forest in the Colorado Rocky Mountains and one 5 °C warmer, and two soil moisture levels. We also tracked germinationmore » rate and timing, rate of seedling development, and seedling morphology for two seed provenances separated by ~300 m elevation. Warming advanced germination timing and initial seedling development by a total of ~2 weeks, advances comparable to mean differences between provenances. Advances were similar for both provenances and species; however, warming reduced the overall germination rate, as did low soil moisture, only for Picea engelmannii. A three-year field warming and watering experiment planted with the same species and provenances yielded responses qualitatively consistent with the lab trials. Altogether these experiments indicate that in a warmer, drier climate, P. engelmannii germination, and thus regeneration, could decline, which could lead to declining subalpine forest populations, while Pinus flexilis forest populations could remain robust as a seed source for upslope range shifts.« less

Resource diversity and provenance underpin spatial patterns in functional diversity across native and exotic species.

PubMed

Méndez, Verónica; Wood, Jamie R; Butler, Simon J

2018-05-01

Functional diversity metrics are increasingly used to augment or replace taxonomic diversity metrics to deliver more mechanistic insights into community structure and function. Metrics used to describe landscape structure and characteristics share many of the same limitations as taxonomy-based metrics, particularly their reliance on anthropogenically defined typologies with little consideration of structure, management, or function. However, the development of alternative metrics to describe landscape characteristics has been limited. Here, we extend the functional diversity framework to characterize landscapes based on the diversity of resources available across habitats present. We then examine the influence of resource diversity and provenance on the functional diversities of native and exotic avian communities in New Zealand. Invasive species are increasingly prevalent and considered a global threat to ecosystem function, but the characteristics of and interactions between sympatric native and exotic communities remain unresolved. Understanding their comparative responses to environmental change and the mechanisms underpinning them is of growing importance in predicting community dynamics and changing ecosystem function. We use (i) matrices of resource use (species) and resource availability (habitats) and (ii) occurrence data for 62 native and 25 exotic species and 19 native and 13 exotic habitats in 2015 10 × 10 km quadrats to examine the relationship between native and exotic avian and landscape functional diversity. The numbers of species in, and functional diversities of, native and exotic communities were positively related. Each community displayed evidence of environmental filtering, but it was significantly stronger for exotic species. Less environmental filtering occurred in landscapes providing a more diverse combination of resources, with resource provenance also an influential factor. Landscape functional diversity explained a greater

Lithofacies control in detrital zircon provenance studies: Insights from the Cretaceous Methow basin, southern Canadian Cordillera

USGS Publications Warehouse

DeGraaff-Surpless, K.; Mahoney, J.B.; Wooden, J.L.; McWilliams, M.O.

2003-01-01

High-frequency sampling for detrital zircon analysis can provide a detailed record of fine-scale basin evolution by revealing the temporal and spatial variability of detrital zircon ages within clastic sedimentary successions. This investigation employed detailed sampling of two sedimentary successions in the Methow/Methow-Tyaughton basin of the southern Canadian Cordillera to characterize the heterogeneity of detrital zircon signatures within single lithofacies and assess the applicability of detrital zircon analysis in distinguishing fine-scale provenance changes not apparent in lithologic analysis of the strata. The Methow/Methow-Tyaughton basin contains two distinct stratigraphic sequences of middle Albian to Santonian clastic sedimentary rocks: submarine-fan deposits of the Harts Pass Formation/Jackass Mountain Group and fluvial deposits of the Winthrop Formation. Although both stratigraphic sequences displayed consistent ranges in detrital zircon ages on a broad scale, detailed sampling within each succession revealed heterogeneity in the detrital zircon age distributions that was systematic and predictable in the turbidite succession but unpredictable in the fluvial succession. These results suggest that a high-density sampling approach permits interpretation of finescale changes within a lithologically uniform turbiditic sedimentary succession, but heterogeneity within fluvial systems may be too large and unpredictable to permit accurate fine-scale characterization of the evolution of source regions. The robust composite detrital zircon age signature developed for these two successions permits comparison of the Methow/Methow-Tyaughton basin age signature with known plutonic source-rock ages from major plutonic belts throughout the Cretaceous North American margin. The Methow/Methow-Tyaughton basin detrital zircon age signature matches best with source regions in the southern Canadian Cordillera, requiring that the basin developed in close proximity to the

Soil magnetic susceptibility mapping as a pollution and provenance tool: an example from southern New Zealand

NASA Astrophysics Data System (ADS)

Martin, A. P.; Ohneiser, C.; Turnbull, R. E.; Strong, D. T.; Demler, S.

2018-02-01

The presence or absence, degree and variation of heavy metal contamination in New Zealand soils is a matter of ongoing debate as it affects soil quality, agriculture and human health. In many instances, however, the soil heavy metal concentration data do not exist to answer these questions and the debate is ongoing. To address this, magnetic susceptibility (a common proxy for heavy metal contamination) values were measured in topsoil (0-30 cm) and subsoil (50-70 cm) at grid sites spaced at 8 km intervals across ca. 20 000 km2 of southern New Zealand. Samples were measured for both mass- and volume-specific magnetic susceptibility, with results being strongly, positively correlated. Three different methods of determining anomalies were applied to the data including the topsoil-subsoil difference method, Tukey boxplot method and geoaccumulation index method, with each method filtering out progressively more anomalies. Additional soil magnetic (hysteresis, isothermal remanence and thermomagnetic) measurements were made on a select subset of samples from anomalous sites. Magnetite is the dominant remanence carrying mineral, and magnetic susceptibility is governed by that minerals concentration in soils, rather than mineral type. All except two anomalous sites have a dominant geogenic source (cf. anthropogenic). By proxy, heavy metal contamination in southern New Zealand soils is minimal, making them relatively pristine. The provenance of the magnetic minerals in the anomalous sites can be traced back to likely sources in outcrops of igneous rocks within the same catchment, terrane or rock type: a distance of <100 km but frequently <1 km. Soil provenance is a key step when mapping element or isotopic distribution, vectoring to mineralization or studying soil for agricultural suitability, water quality or environmental regulation. Measuring soil magnetic susceptibility is a useful, quick and inexpensive tool that usefully supplements soil geochemical data.

Humic acid provenance influence to the adsorption capacity in uranium and thorium removal

NASA Astrophysics Data System (ADS)

Prasetyo, E.

2018-01-01

It is common knowledge that humic acid is organic compound without certain chemical composition since it is derived from different organic materials. Further this raises question whether the different humic acid sample used could lead to different adsorbent properties e.g. adsorption capacity. To address the problem, this paper is aimed to clarify the relation between the provenances of humic acid and synthesized adsorbent properties especially adsorption capacities by quantitative and qualitative functional groups determination including discussion on their effect to the metal ion adsorption mechanism using three humic acid samples. Two commercial samples were derived from recent compost while the other extracted from tertiary carbonaceous mudstone strata.

How to Get Information on Several Proven Programs for Accelerating the Progress of Low-Achieving Children (Literacy for All Children).

ERIC Educational Resources Information Center

Allington, Richard L.

1992-01-01

Offers summaries of three proven programs (Reading Recovery, Success for All, and Accelerated Schools) for accelerating the reading and writing progress of low-achieving, low-income children. Provides addresses for more information. (SR)

Changing Dust Provenance to the South Atlantic Since the Last Glacial Maximum and Implications for the Southern Hemisphere Wind Belts

NASA Astrophysics Data System (ADS)

Franzese, A. M.; Goldstein, S. L.; Hemming, S. R.

2017-12-01

The Southern Hemisphere Westerly Winds are known to be important for climate due to their effects on the global carbon cycle and on the global thermohaline circulation (THC). Numerous proxy records have been interpreted to indicate significant glacial to interglacial changes in the SHWW. There is no clear consensus regarding their strength and position during the Last Glacial Maximum (LGM), though most observations are consistent with an equatorward displacement of the glacial wind belts. We test this hypothesis using geochemical provenance measurements of deep-sea sediments deposited along the Mid-Atlantic Ridge between 24°S and 37°S. In the central South Atlantic, dust can be delivered from South America via the Westerlies, or from Africa via the Trade Winds. The dust sources on South America and Africa have very different geochemical signatures, making it possible to distinguish between eolian transport via the Westerlies vs. the Trade Winds. Any northward shift in the Southern Hemisphere Westerlies should increase the northward extent of a South American provenance in sediments dominated by eolian sources. We measured major and trace element concentrations, and radiogenic isotopes of Ar, Sr, Nd, and Pb on the <5 μm lithogenic sediments from a latitudinal transect of cores along the flanks of the Mid-Atlantic Ridge. In general, the data point to an older continental provenance for the northernmost sites, and a much younger provenance for the southernmost sites, consistent with western Africa as the primary source of sediment in the north, and South American sediments being delivered to the south. Glacial sediments display a clear compositional boundary near 30°S, which likely reflects the boundary between the Westerlies and the Trade Winds. The data are therefore not consistent with northward shifted wind belts at the LGM. The observed variations in terrigenous sediment composition at these sites may, however, be consistent with an equatorward displacement

Twenty-two year results of a Scots pine (Pinus sylvestris L.) provenance test in North Dakota

Treesearch

Richard A. Cunningham; David F. Van Haverbeke

1991-01-01

A provenance test of 49 seed sources of Scots pine (Pinus sylvestris L.) from eastern Europe, Russia, and Siberia was established in two plantations in north-central North Dakota. After 22 years, trees from seed sources within the region bounded by 20° to 57° east longitude and 50° to 58° north latitude were taller, and larger in diameter, and had denser crown and...

Lithostratigraphy, provenance and facies distribution of Archaean cratonic successions in western Kenya

NASA Astrophysics Data System (ADS)

Ngecu, Wilson M.; Gaciri, Steve J.

1995-10-01

The greenstone belt of the Tanzanian shield in Western Kenya is composed of two supracrustal successions, which form the Nyanzian and Kavirondian Groups. The Nyanzian Group at the base is composed of mafic tholeiitic basalts, calc-alkaline dacites and rhyolites. The group is unconformably overlain by the Kavirondian Group. During recent field mapping, the Kavirondian Group was divided into three formations. The Shivakala Formation consists of thickly bedded basal conglomerates, which are interbedded with thin sandstone beds. The Igukhu Formation conformably overlies the Shivakala Formation and is composed of thickly and locally thinly bedded greywacke. The uppermost Mudaa Formation is composed of blocky mudstones and thinly laminated shales. A high proportion of volcanic, granitic and chert pebbles in the conglomerates, along with abundant quartz, feldspars and mudstone fragments in the greywacke, indicates a mixed provenance of volcanic, granitic and recycled sedimentary rocks. Primary sedimentary structures and lithofacies associations indicate that the conglomerates were deposited in an alluvial fan/fan-delta setting. The greywackes represent proximal turbidites while the mudstone and shales were deposited mainly as distal turbidites. In the study area there is no evidence of transitional nearshore or shallow marine facies transitional to the continental and deep marine facies.

Provenance of loess deposits in the Eastern Qinling Mountains (central China) and their implications for the paleoenvironment

NASA Astrophysics Data System (ADS)

Zhang, Hongyan; Lu, Huayu; Jiang, Shao-Yong; Vandenberghe, Jef; Wang, Shejiang; Cosgrove, Richard

2012-06-01

Loess deposits in the Eastern Qinling Mountains (central China) provide a detailed archive for reconstructing the paleoenvironment during early hominin occupation. The study of the loess deposits also provides a unique opportunity to understand Pleistocene atmospheric circulation in this transitional climatic zone. However, the provenance and formation of the loess deposits were not well understood until now. In this paper, we report on new geomorphologic investigations and depositional analyses of the loess deposits. The results suggest that Gobi deserts and drylands in northern and northwestern China were one of the dust sources. These loess deposits show similar geochemical composition as the average upper crust (UCC), and may indicate that they experienced multiple sedimentary processes, with the dust being well mixed before deposition. However, the higher 87Sr/86Sr ratios (between 0.719650 and 0.721043) and extremely low ɛNd(0) values (between -11.98 and -18.97), which are different from the typical loess of the Chinese Loess Plateau, demonstrate that proximal clastic sediments that were apparently derived from the weathered Qinling orogen bedrocks, form the other important source for the loess deposits. The chemical Index of Alteration [CIA = Al2O3/(Al2O3 + CaO* + Na2O + K2O) × 100] and Chemical Proxy of Alteration [CPA = 100 × Al2O3/(Al2O3 + Na2O)], both in molar proportions show that the loess has experienced intense pedogenesis. We conclude that the loess deposit has a mixed provenance. The palaeoclimate in the Eastern Qinling Mountains remained mild in the glacial periods due to the topography and unique geographic locations, providing a suitable place for hominine occupation.

Evaluation of T1/T2 ratios in a pilot study as a potential biomarker of biopsy: proven benign and malignant breast lesions in correlation with histopathological disease stage.

PubMed

Malikova, Marina A; Tkacz, Jaroslaw N; Slanetz, Priscilla J; Guo, Chao-Yu; Aakil, Adam; Jara, Hernan

2017-08-01

Early breast cancer detection is important for intervention and prognosis. Advances in treatment and outcome require diagnostic tools with highly positive predictive value. To study the potential role of quantitative MRI (qMRI) using T1/T2 ratios to differentiate benign from malignant breast lesions. A cross-sectional study of 69 women with 69 known or suspicious breast lesions were scanned with mixed-turbo spin echo pulse sequence. Patients were grouped according to histopathological assessment of disease stage: untreated malignant tumor, treated malignancy and benign disease. Elevated T1/T2 means were observed for biopsy-proven malignant lesions and for malignant lesions treated prior to qMRI with chemotherapy and/or radiation, as compared with benign lesions. The qMRI-obtained T1/T2 ratios correlated with histopathology. Analysis revealed correlation between elevated T1/T2 ratio and disease stage. This could provide valuable complementary information on tissue properties as an additional diagnostic tool.

The AtChem On-line model and Electronic Laboratory Notebook (ELN): A free community modelling tool with provenance capture

NASA Astrophysics Data System (ADS)

Young, J. C.; Boronska, K.; Martin, C. J.; Rickard, A. R.; Vázquez Moreno, M.; Pilling, M. J.; Haji, M. H.; Dew, P. M.; Lau, L. M.; Jimack, P. K.

2010-12-01

AtChem On-line1 is a simple to use zero-dimensional box modelling toolkit, developed for use by laboratory, field and chamber scientists. Any set of chemical reactions can be simulated, in particular the whole Master Chemical Mechanism (MCM2) or any subset of it. Parameters and initial data can be provided through a self-explanatory web form and the resulting model is compiled and run on a dedicated server. The core part of the toolkit, providing a robust solver for thousands of chemical reactions, is written in Fortran and uses SUNDIALS3 CVODE libraries. Chemical systems can be constrained at multiple, user-determined timescales; this enabled studies of radical chemistry at one minute timescales. AtChem On-line is free to use and requires no installation - a web browser, text editor and any compressing software is all the user needs. CPU and storage are provided by the server (input and output data are saved indefinitely). An off-line version is also being developed, which will provide batch processing, an advanced graphical user interface and post-processing tools, for example, Rate of Production Analysis (ROPA) and chainlength analysis. The source code is freely available for advanced users wishing to adapt and run the program locally. Data management, dissemination and archiving are essential in all areas of science. In order to do this in an efficient and transparent way, there is a critical need to capture high quality metadata/provenance for modelling activities. An Electronic Laboratory Notebook (ELN) has been developed in parallel with AtChem Online as part of the EC EUROCHAMP24 project. In order to use controlled chamber experiments to evaluate the MCM, we need to be able to archive, track and search information on all associated chamber model runs, so that they can be used in subsequent mechanism development. Therefore it would be extremely useful if experiment and model metadata/provenance could be easily and automatically stored electronically

Petrography and geochemistry of modern river sediments in an equatorial environment (Rwenzori Mountains and Albertine rift, Uganda) - Implications for weathering and provenance

NASA Astrophysics Data System (ADS)

Schneider, Sandra; Hornung, Jens; Hinderer, Matthias; Garzanti, Eduardo

2016-05-01

In hot-humid equatorial climate chemical weathering may be so strong that provenance signatures may be largely lost and even detritus derived from crystalline basement rocks reduced to quartzose sand. We tested this hypothesis in western Uganda, where stable plateau areas contrast with the active tectonic setting of the Albertine Rift (western branch of the East African Rift System, EARS), culminating in the strongly exhumed fault block of the > 5000 m high Rwenzori Mountains. In this setting, sediments derived from similar types of basement rocks including gneiss, schist, amphibolite, metasediments and granites can be traced from rapidly eroding high-altitude areas to low-altitude areas undergoing prolonged weathering. Sand and mud carried by 51 rivers overall in these two contrasting landscapes were sampled to study how and to what extent detrital modes are modified by the selective loss of unstable detrital minerals. Sediments generated in the high-relief Rwenzori Mountains show abundant feldspar (up to 32%) and rock fragments (up to 52%), which together with low SiO2/Al2O3 ratio and composition close to the Upper Continental Crust (UCC standard) reflect erosion in weathering-limited conditions. In the central Rwenzoris, low Th/Sc and Zr/Sc ratios, weak negative Eu anomaly, lower LaN/YbN values, and heavy-mineral assemblages with hornblende and epidote reflect the lithology of source rocks in the Buganda-Toro-Greenstone Belt. In contrast, sediments produced on the low-relief plateau have quartz content up to 98% and higher SiO2/Al2O3 ratio. Systematic loss of mobile elements is indicated by high chemical weathering indices CIA, PIA and WIP. However, provenance from metamorphic basement rocks is still indicated by heavy-mineral assemblages dominated by epidote and amphibole, whereas provenance from granitic rocks is revealed by high Th/Sc and Zr/Sc ratio, negative Eu anomaly and higher LaN/YbN values. We conclude that first-cycle sediments generated in high

Clinical and investigative profile of biopsy-proven sarcoid uveitis in India.

PubMed

Ganesh, Sudha K; Agarwal, Manisha

2008-01-01

Retrospective analysis of the clinical features, investigative profile, response to treatment, and final visual outcome in histopathologically confirmed cases of sarcoid uveitis. Retrospective case series analysis was done of 15 eyes of 9 patients seen between July 1999 and August 2003 with biopsy-proven sarcoid uveitis. There were 3 were males and 6 females. The mean age at presentation was 44.1 years (range 11-62 years), The mean follow-up was 28.4 months. Six patients had bilateral ocular involvement and 3 had unilateral involvement. Five out of 9 patients had primarily ocular involvement. The most common presentation was intermediate uveitis and granulomatous anterior uveitis in 7 patients. Eight of 9 patients responded well to the medical treatment with systemic and periocular steroids. Ocular lesions can be the primary manifestation of systemic sarcoidosis. Sarcoid uveitis in the Asian Indian population often presents an intermediate uveitis with granulomatous anterior uveitis.

Establishing a range-wide provenance test in valley oak (Quercus lobata Née) at two California sites

Treesearch

Annette Delfino-Mix; Jessica W. Wright; Paul F. Gugger; Christina Liang; Victoria L. Sork

2015-01-01

We present the methods used to establish a provenance test in valley oak, Quercus lobata. Nearly 11,000 acorns were planted and 88 percent of those germinated. The resulting seedlings were measured after 1 and 2 years of growth, and were outplanted in the field in the winter of 2014-2015. This test represents a long-term resource for both research...

Complete Genome Sequence of the Hyperthermophilic Sulfate-Reducing Bacterium Thermodesulfobacterium geofontis OPF15T.

PubMed

Elkins, James G; Hamilton-Brehm, Scott D; Lucas, Susan; Han, James; Lapidus, Alla; Cheng, Jan-Fang; Goodwin, Lynne A; Pitluck, Sam; Peters, Lin; Mikhailova, Natalia; Davenport, Karen W; Detter, John C; Han, Cliff S; Tapia, Roxanne; Land, Miriam L; Hauser, Loren; Kyrpides, Nikos C; Ivanova, Natalia N; Pagani, Ioanna; Bruce, David; Woyke, Tanja; Cottingham, Robert W

2013-04-11

Thermodesulfobacterium geofontis OPF15(T) (ATCC BAA-2454, JCM 18567) was isolated from Obsidian Pool, Yellowstone National Park, and grows optimally at 83°C. The 1.6-Mb genome sequence was finished at the Joint Genome Institute and has been deposited for future genomic studies pertaining to microbial processes and nutrient cycles in high-temperature environments.

Complete Genome Sequence of the Hyperthermophilic Sulfate-Reducing Bacterium Thermodesulfobacterium geofontis OPF15T

PubMed Central

Hamilton-Brehm, Scott D.; Lucas, Susan; Han, James; Lapidus, Alla; Cheng, Jan-Fang; Goodwin, Lynne A.; Pitluck, Sam; Peters, Lin; Mikhailova, Natalia; Davenport, Karen W.; Detter, John C.; Han, Cliff S.; Tapia, Roxanne; Land, Miriam L.; Hauser, Loren; Kyrpides, Nikos C.; Ivanova, Natalia N.; Pagani, Ioanna; Bruce, David; Woyke, Tanja; Cottingham, Robert W.

2013-01-01

Thermodesulfobacterium geofontis OPF15T (ATCC BAA-2454, JCM 18567) was isolated from Obsidian Pool, Yellowstone National Park, and grows optimally at 83°C. The 1.6-Mb genome sequence was finished at the Joint Genome Institute and has been deposited for future genomic studies pertaining to microbial processes and nutrient cycles in high-temperature environments. PMID:23580711

Provenance analysis of the Oligocene turbidites (Andaman Flysch), South Andaman Island: A geochemical approach

NASA Astrophysics Data System (ADS)

Bandopadhyay, P. C.; Ghosh, Biswajit

2015-07-01

The Oligocene-aged sandstone-shale turbidites of the Andaman Flysch are best exposed along the east coast of the South Andaman Island. Previously undocumented sandstone-shale geochemistry, investigated here, provides important geochemical constraints on turbidite provenance. The average 70.75 wt% SiO2, 14.52 wt% Al2O3, 8.2 wt% FeMgO and average 0.20 Al2O3/SiO2 and 1.08 K2O/Na2O ratios in sandstones, compare with quartzwackes. The shale samples have average 59.63 wt% SiO2, 20.29 wt% Al2O3, 12.63 wt% FeMgO and average 2.42 K2O/Na2O and 0.34 Al2O3/SiO2 ratios. Geochemical data on CaO-Na2O-K2O diagram fall close to a granite field and on K2O/Na2O-SiO2 diagram within an active continental margin tectonic setting. The range and average values of Rb and Rb/Sr ratios are consistent with acid-intermediate igneous source rocks, while the values and ratios for Cr and Ni are with mafic rocks. Combined geochemical, petrographic and palaeocurrent data indicate a dominantly plutonic-metamorphic provenance with a lesser contribution from sedimentary and volcanic source, which is possibly the Shan-Thai continental block and volcanic arc of the north-eastern and eastern Myanmar. Chemical index of alteration (CIA) values suggests a moderate range of weathering of a moderate relief terrane under warm and humid climate.

Opinion: Taking phytoremediation from proven technology to accepted practice.

PubMed

Gerhardt, Karen E; Gerwing, Perry D; Greenberg, Bruce M

2017-03-01

Phytoremediation is the use of plants to extract, immobilize, contain and/or degrade contaminants from soil, water or air. It can be an effective strategy for on site and/or in situ removal of various contaminants from soils, including petroleum hydrocarbons (PHC), polycyclic aromatic hydrocarbons (PAHs), polychlorinated biphenyls (PCBs), solvents (e.g., trichloroethylene [TCE]), munitions waste (e.g., 2,4,6-trinitrotoluene [TNT]), metal(loid)s, salt (NaCl) and radioisotopes. Commercial phytoremediation technologies appear to be underutilized globally. The primary objective of this opinion piece is to discuss how to take phytoremediation from a proven technology to an accepted practice. An overview of phytoremediation of soil is provided, with the focus on field applications, to provide a frame of reference for the subsequent discussion on better utilization of phytoremediation. We consider reasons why phytoremediation is underutilized, despite clear evidence that, under many conditions, it can be applied quite successfully in the field. We offer suggestions on how to gain greater acceptance for phytoremediation by industry and government. A new paradigm of phytomanagement, with a specific focus on using phytoremediation as a "gentle remediation option" (GRO) within a broader, long-term management strategy, is also discussed. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Structural Analysis of Silicic Lavas Reveals the Importance of Endogenous Flow During Emplacement

NASA Astrophysics Data System (ADS)

Andrews, G. D.; Martens, A.; Isom, S.; Maxwell, A.; Brown, S. R.

2017-12-01

Recent observations of silicic lava flows in Chile strongly suggest sustained, endogeneous flow beneath an insulating carapace, where the flow advances through breakouts at the flow margin. New mapping of vertical exposures around the margin of Obsidian Dome, California, has identified discreet lobe structures in cross-section, suggesting that flow-front breakouts occured there during emplacement. The flow lobes are identified through structural measurements of flow-banding orientation and the stretching directions of vesicles. Newly acquired lidar of the Inyo Domes, including Obsidian Dome, is being analyzed to better understand the patterns of folding on the upper surface of the lavas, and to test for fold vergence patterns that may distinguish between endogenous and exogenous flow.

Deglacial Dust Provenance Changes in the Eastern Equatorial Pacific and Implications for ITCZ Movement

NASA Astrophysics Data System (ADS)

Xie, R.; Marcantonio, F.

2009-12-01

The provenance of the eolian dust component of deep-sea sediments has the potential to offer insights into changes in past atmospheric circulation patterns. Measuring temporal changes in dust provenance can shed more light on changes in the position of the Intertropical Convergence Zone (ITCZ), a region in which dust is removed from the upper troposphere by deep convection and scavenged by precipitation. The ITCZ should, therefore, act as a barrier separating wind-blown northern versus southern sources. Perhaps the best way to trace for provenance of dust sources is through the measurement of radiogenic isotope ratios. Here, we have analyzed Nd, Sr, and Pb isotope ratios in the detrital components extracted from deep-sea sediments in the eastern equatorial Pacific (EEP) along a meridional transect at 110W from 3S to 7N (ODP Leg 138, Sites 848 - 853). At each site, the sediments ranged in age from 0 to 25 ka. Detrital component extraction involved the chemical removal of the biogenic and authigenic sedimentary fractions. Preliminary detrital Nd isotope ratios show a range of 2.4 ɛNd units (from -5.7 to -3.3). There are distinct latitudinal trends in the ɛNd values, with more radiogenic values further south and less radiogenic values further north. This distinction holds true for both Holocene and glacial time. The difference in Nd isotope ratios at any one site between Holocene and glacial is smaller for the sites furthest North. The greatest Holocene-glacial differences in ɛNd occur at sites south of 3N, suggesting a distinct detrital component boundary at this latitude. The sites furthest north (7N and 5.29N) show the greatest variability in detrital 87Sr/86Sr isotope ratios, while sites furthest south (equator and 1.5N) show negligible variability. The detrital component of sediment at Site 851 (2.77N) has a Sr isotope variability that is intermediate between the northern and southern values, again suggesting a detrital boundary of some sort. We interpreted

Age and provenance of Triassic to Cenozoic sediments of West and Central Sarawak, Malaysia

NASA Astrophysics Data System (ADS)

Breitfeld, H. Tim; Galin, Thomson; Hall, Robert

2015-04-01

Sarawak is located on the northern edge of Sundaland in NW Borneo. West and Central Sarawak include parts of the Kuching and Sibu Zones. These contain remnants of several sedimentary basins with ages from Triassic to Cenozoic. New light mineral, heavy mineral and U-Pb detrital zircon ages show differences in provenance reflecting the tectonic evolution of the region. The oldest clastic sediments are Triassic (Sadong Formation and its deep marine equivalent Kuching Formation). They were sourced by a Triassic (Carnian to Norian) volcanic arc and reworked Paleoproterozoic detritus derived from Cathaysialand. The Upper Jurassic to Cretaceous Pedawan Formation is interpreted as forearc basin fill with distinctive zircon populations indicating subduction beneath present-day West Sarawak which initiated in the Late Jurassic. Subsequent subduction until the early Late Cretaceous formed the Schwaner Mountains magmatic arc. After collision of SW Borneo and other microcontinental fragments with Sundaland in the early Late Cretaceous, deep marine sedimentation (Pedawan Formation) ceased, and there was uplift forming the regional Pedawan-Kayan unconformity. Two episodes of extension followed and were responsible for basin development on land in West Sarawak from the latest Cretaceous onwards, probably in a pull-apart setting. The first episode is associated with sediments of the Kayan Group, deposited in the Latest Cretaceous (Maastrichtian) to Eocene, and the second episode with Upper Eocene sediments of the Ketungau Basin. Zircon ages indicate volcanic activity throughout the Early Cenozoic in NW Borneo, and inherited zircon ages indicate reworking of Triassic and Cretaceous rocks. A large deep marine basin, the Rajang Basin, was north of the Lupar Line Fault in Central Sarawak (Sibu Zone) from the Late Cretaceous to the Late Eocene. Zircons from sediments of the Rajang Basin indicate they have similar ages and provenance to contemporaneous terrestrial sediments of the Kayan

Determining the palaeodrainage of the Nile river from a provenance study of the Nile delta cone sediments: an on-going geochemical study

NASA Astrophysics Data System (ADS)

Fielding, Laura; Najman, Yani; Millar, Ian; Butterworth, Peter; Kneller, Ben; Garzanti, Eduardo

2013-04-01

This study documents the palaeodrainage history of the Nile River, in particular the time of transition from a small locally sourced drainage network to the initiation of an extensive Nile catchment, by conducting a provenance study of the well-dated Nile cone sediments. The identification of specific source inputs into the Nile cone has important implications for the prediction of reservoir quality and connectivity in hydrocarbon reservoirs. Presently, the Nile river drains as far south as south of Lake Victoria, with the White Nile draining largely Cratonic basement rocks of Archean to Proterozoic ages and the Blue Nile draining Cenozoic continental flood basalts and Neoproterozoic basement in Ethiopia. However, the timing of catchment expansion to its current extent is highly debated. There are a number of proposed palaeodrainage reconstructions, two of which are: A) The Blue Nile did not connect with the main (lower) Nile until the Late Messinian, and the White Nile did not connect with the lower Nile until at 0.5 Ma (e.g. Issawi and McCauley, 1992). In this model, the pre-Messinian Nile cone sediments are derived exclusively from the northern part of the present drainage basin, from the Red Sea Hills. B) The Blue Nile and Atbara Rivers have been connected to the main (lower) Nile since the Oligocene, simultaneous with large scale regional uplift and volcanism in the Ethiopian Highlands; with the river following a similar course to present day (Burke and Wells 1989). The palaeo-Nile cone sediments have the capacity to provide a unique archive of the river's highly debated palaeodrainage history. Our first objective was to characterise petrographically, geochemically and isotopically each possible source area (Ethiopian Flood Basalts, African Craton and Red Sea Hills) using a multidisciplinary approach in order to identify the presence (if any) of sediment from these sources in the delta core samples. Heavy mineral, petrographic, U-Pb zircon and rutile analyses

Comparing the Epica and Vostok dust records during the last 220,000 years: stratigraphical correlation and provenance in glacial periods

NASA Astrophysics Data System (ADS)

Delmonte, B.; Basile-Doelsch, I.; Petit, J.-R.; Maggi, V.; Revel-Rolland, M.; Michard, A.; Jagoutz, E.; Grousset, F.

2004-06-01

A new aeolian dust record from the first 2200 m of the EPICA-Dome C ice core (75°06'S, 123°21'E) covering about 220,000 years of climatic history is compared to the Vostok (78°28'S, 106°48'E) ice core [Nature 399 (1999) 429]. The two dust profiles are very similar and several common dust events allow to establish stratigraphical links. The late Quaternary period is characterized at both sites, and likely overall East Antarctic plateau, by high dust input during glacial periods. In the EPICA-Dome C ice core, the dust flux rises by a factor of ˜25, ˜20 and ˜12 in glacial stages 2, 4 and 6 with respect to interglacial periods (Holocene and stage 5.5). The magnitude and pattern of changes are comparable in the Vostok ice core. In this study, the geographical origin of ice core dust (ICD) in cold periods has been investigated at both sites through 87Sr/ 86Sr versus 143Nd/ 144Nd isotopic tracers, following the previous studies of Grousset et al. [Earth Planet. Sci. Lett. 111 (1992) 175] and Basile et al. [Earth Planet. Sci. Lett. 146 (1997) 573]. The new data and the existing ones allow to define the isotopic fields for dust at the two Antarctic sites that are almost identical and restricted into the 0.708< 87Sr/ 86Sr<0.711 and -5< ɛNd(0)<+5 ranges. This suggests a common geographical provenance for dust at Vostok and Dome C and for all the glacial periods of the late Pleistocene. To decipher the ICD provenance, more than 50 samples of loess and aeolian deposits, sands and fluvioglacial sediments from the Potential Source Areas (PSAs) of the Southern Hemisphere have been collected. However, the methodology has been refined with respect to former studies. First, the isotopic fractionation that can occur in function of grain size has been taken into account, and the PSA's signature has been defined in the <5 μm size range, within which fine-grained dust reaching Antarctica is found. Moreover, a possible contribution from carbonates on the samples from PSAs has

Regeneration of Pinus pinaster Aiton after prescribed fires: Response to burn timing and biogeographical seed provenance across a climatic gradient.

PubMed

Sagra, J; Ferrandis, P; Plaza-Álvarez, P A; Lucas-Borja, M E; González-Romero, J; Alfaro-Sánchez, R; De Las Heras, J; Moya, D

2018-05-17

Prescribed fires are used as a fuel reduction tool, but heat alter microsite conditions affecting the natural regeneration of Mediterranean pine forests. Our study tested the hypothesis that implementing prescription before or after pine seed release may influence the composition of tree communities by changing the regeneration patterns of Pinus pinaster Aiton across a climatic gradient in the eastern Iberian Peninsula. We ran a seed-sowing experiment to analyse the recruitment patterns of this pine species in prescribed-burned stands, in two different biogeographical seed provenances from wetter and drier areas than the local seeding site. Survival of seedlings was through one year, until the end of the first drought and winter period, respectively. >5400 seeds were sown during the study distributed in sixty plots (30 burned, 30 unburned) per site and treatment, with 10 seeding units per plot. General linear models (GLMs) and ANOVA analyses indicated higher performance for the Drier seed provenance in burned areas, whereas a similar performance was recorded in the control area. Control areas showed higher germination and success rates for plant establishment throughout the study period. Total germination and survival after one year were slightly higher, respectively, at northern sites due to massive mortality during summer in the southern stands. At the burned sites, the mean germination time was significantly longer in those seeds sown before fire passage than those sown after fire. Total germination and successful establishment were significantly higher in the individuals sown before the passage of the fire than in those sown after fire. Most of the mortality occurred in summer for the southern stand, while winter was the most constraining period at the northern sites. The understanding of the dynamics in this species' establishment can help managers to perform a better management planning according to the species' ecology. Copyright © 2018 Elsevier B.V. All

Lowering the Barriers to Integrative Aquatic Ecosystem Science: Semantic Provenance, Open Linked Data, and Workflows

NASA Astrophysics Data System (ADS)

Harmon, T.; Hofmann, A. F.; Utz, R.; Deelman, E.; Hanson, P. C.; Szekely, P.; Villamizar, S. R.; Knoblock, C.; Guo, Q.; Crichton, D. J.; McCann, M. P.; Gil, Y.

2011-12-01

Environmental cyber-observatory (ECO) planning and implementation has been ongoing for more than a decade now, and several major efforts have recently come online or will soon. Some investigators in the relevant research communities will use ECO data, traditionally by developing their own client-side services to acquire data and then manually create custom tools to integrate and analyze it. However, a significant portion of the aquatic ecosystem science community will need more custom services to manage locally collected data. The latter group represents enormous intellectual capacity when one envisions thousands of ecosystems scientists supplementing ECO baseline data by sharing their own locally intensive observational efforts. This poster summarizes the outcomes of the June 2011 Workshop for Aquatic Ecosystem Sustainability (WAES) which focused on the needs of aquatic ecosystem research on inland waters and oceans. Here we advocate new approaches to support scientists to model, integrate, and analyze data based on: 1) a new breed of software tools in which semantic provenance is automatically created and used by the system, 2) the use of open standards based on RDF and Linked Data Principles to facilitate sharing of data and provenance annotations, 3) the use of workflows to represent explicitly all data preparation, integration, and processing steps in a way that is automatically repeatable. Aquatic ecosystems workflow exemplars are provided and discussed in terms of their potential broaden data sharing, analysis and synthesis thereby increasing the impact of aquatic ecosystem research.

Tracing erosion patterns in Taiwan by quantitative provenance and geomorphological analysis

NASA Astrophysics Data System (ADS)

Resentini, Alberto; Goren, Liran; Castelltort, Sebastien; Garzanti, Eduardo

2016-04-01

Taiwan is one of the world's foremost natural laboratories for studies of orogenesis. After only a few Ma of ongoing collision between the Chinese continental margin and the Luzon Arc, the associated orogen has reached nearly 4 km in height and 100-150 km in width. High rates of convergence leading to rapid rock uplift combine with the wet stormy climate of the sub-tropical typhoon belt to deliver annually an average detrital mass of 9500 t/km2. The doubly-vergent thrust belt is composed of more than 85% of sedimentary rocks dominant in the pro-wedge, but metamorphic rocks as young as < 10 Ma are exposed in the retro-wedge, where zircon fission-track, apatite fission-track and (U-Th)/He ages are all reset and as young as 1 Ma or younger, indicating very recent fast exhumation. There is hardly another region where rock-uplift, unroofing and sediment production are of equal intensity. Quantitative analyses of tectonic and erosional processes around Taiwan have been carried out following diverse independent ways, including estimates of fluvial discharge of suspended solids, thermochronological techniques, cosmogenic measurements, and morphometry of river profiles (Dadson et al., 2003; Willett et al., 2003; Fox et al., 2014). Also the appearance and relative abundance of diagnostic rock fragments and other detrital minerals in Plio-Pleistocene sedimentary successions has been used to constrain unroofing rates, but a systematic description of compositional signatures of sediments shed by distinct tectonic domains has not been carried out so far. In this study we combine high-resolution petrographic and heavy-mineral analyses of modern sands carried by rivers all around Taiwan with their estimated sediment loads to calculate the detrital volumes generated from different lithologic assemblages within the orogen. River sediments are potent integrators of information that efficiently mediate provenance signals from different parts of the entire watershed, thus offering a

Tracking and Establishing Provenance of Earth Science Datasets: A NASA-Based Example

NASA Technical Reports Server (NTRS)

Ramapriyan, Hampapuram K.; Goldstein, Justin C.; Hua, Hook; Wolfe, Robert E.

2016-01-01

Information quality is of paramount importance to science. Accurate, scientifically vetted and statistically meaningful and, ideally, reproducible information engenders scientific trust and research opportunities. Not surprisingly, federal bodies (e.g., NASA, NOAA, USGS) have very strictly affirmed the importance of information quality in their product requirements. So-called Highly Influential Scientific Assessments (HISA) such as The Third US National Climate Assessment (NCA3) published in 2014 undergo a very rigorous review process to ensure transparency and credibility. To support the transparency of such reports, the U.S. Global Change Research Program (USGCRP) has developed the Global Change Information System (GCIS). A recent activity was performed to trace the provenance as completely as possible for all NCA3 figures that were predominantly based on NASA data. This poster presents the mechanics of that project and the lessons learned from that activity.

Petrography and geochemistry of Jurassic sandstones from the Jhuran Formation of Jara dome, Kachchh basin, India: Implications for provenance and tectonic setting

NASA Astrophysics Data System (ADS)

Periasamy, V.; Venkateshwarlu, M.

2017-06-01

Sandstones of Jhuran Formation from Jara dome, western Kachchh, Gujarat, India were studied for major, trace and rare earth element (REE) geochemistry to deduce their paleo-weathering, tectonic setting, source rock characteristics and provenance. Petrographic analysis shows that sandstones are having quartz grains with minor amount of K-feldspar and lithic fragments in the modal ratio of Q 89:F 7:L 4. On the basis of geochemical results, sandstones are classified into arkose, sub-litharenite, wacke and quartz arenite. The corrected CIA values indicate that the weathering at source region was moderate to intense. The distribution of major and REE elements in the samples normalized to upper continental crust (UCC) and chondrite values indicate similar pattern of UCC. The tectonic discrimination diagram based on the elemental concentrations and elemental ratios of Fe2O3 + MgO vs. TiO2, SiO2 vs. log(K2O/Na2O), Sc/Cr vs. La/Y, Th-Sc-Zr/10, La-Th-Sc plots Jhuran Formation samples in continental rift and collision settings. The plots of Ni against TiO2, La/Sc vs. Th/Co and V-Ni-Th ∗10 reveals that the sediments of Jhuran Formation were derived from felsic rock sources. Additionally, the diagram of (Gd/Yb) N against Eu/Eu ∗ suggest the post-Archean provenance as source possibly Nagar Parkar complex for the studied samples.

Clay mineral distribution and provenance in the Heuksan mud belt, Yellow Sea

NASA Astrophysics Data System (ADS)

Cho, Hyen Goo; Kim, Soon-Oh; Kwak, Kyeong Yoon; Choi, Hunsoo; Khim, Boo-Keun

2015-12-01

The Heuksan mud belt (HMB), located in the southeastern Yellow Sea, runs parallel to the southwest coast of Korea. In this study, the distribution and relative contribution of four major clay minerals are investigated using 101 surface sediment samples collected in the course of KIOST (2001, 2010, 2011) and KIGAM (2012) cruises, as well as 33 river sediment samples (four from the Huanghe River, three from the Changjiang River, and 26 from Korean rivers) in order to clarify the provenance of fine-grained sediments in the HMB. Based on this currently largest and most robust dataset available for interpretation, the clay mineral assemblages of the fine-grained sediments in the HMB are found to be on average composed of 64.7% illite, 17.9% chlorite, 11.4% kaolinite, and 5.9% smectite. Overall, the clay mineral assemblages are similar in both the northern and the southern parts of the HMB, although smectite seems to be relatively enriched in the southern part, whereas kaolinite is slightly more dominant in the northern part. This clearly indicates that the clays are mostly derived from Korean rivers and, in the southern part of the HMB, partly also from the Huanghe River in China. The new data thus confirm and strengthen the tentative interpretation of some earlier work based on a more limited dataset.