Dancing red sprites and the lightning activity in their parent thunderstorm

NASA Astrophysics Data System (ADS)

Bór, József; Zelkó, Zoltán; Hegedüs, Tibor; Jäger, Zoltán; Mlynarczyk, Janusz; Popek, Martin; Betz, Hans-Dieter

2016-04-01

Red sprites are brief optical emissions initiated in the mesosphere by intense tropospheric lightning discharges. A group of red sprites, in which the elements appear in rapid succession with some lateral offset from one another is referred to as a dancing sprite event. The occurrence of such events implies that significant and sequential charge removal extending to large regions of the thunderstorm can take place in the underlying cloud system. In this work, we examine the relation of the locations and observation times of appearing sprite elements to the temporal and spatial distribution of the lightning activity in a specific sprite-active thunderstorm. The selected mesoscale convective system (MCS) composed of several extremely active thundercloud cells crossed Central Europe from South-West to North-East through Germany, Austria, the Czech Republic, and Poland on the night of 6 August, 2013. This MCS has triggered over one hundred sprites including several dancing sprite events. Video recordings of sprites captured from Sopron, Hungary (16.6°E, 47.7°N) and Nydek, Czech Republic (18.8°E, 49.7°N) were used to identify dancing sprite events and to determine the exact locations of the appearing sprite elements by a triangulation technique used originally to analyze meteor observations. Lightning activity in the MCS can be reviewed using the database of LINET lightning detection network which fully covers the region of interest (ROI). The poster demonstrates how cases of sequential charge removal in the thunderstorm can be followed by combining the available information on the occurrence time, location, polarity, and type (CG/IC) of detected lightning strokes in the ROI on one hand and the occurrence time and location of elements in dancing sprite events on the other hand.

Crossed cerebellar diaschisis in patients with acute middle cerebral artery infarction: Occurrence and perfusion characteristics.

PubMed

Sommer, Wieland H; Bollwein, Christine; Thierfelder, Kolja M; Baumann, Alena; Janssen, Hendrik; Ertl-Wagner, Birgit; Reiser, Maximilian F; Plate, Annika; Straube, Andreas; von Baumgarten, Louisa

2016-04-01

We aimed to investigate the overall prevalence and possible factors influencing the occurrence of crossed cerebellar diaschisis after acute middle cerebral artery infarction using whole-brain CT perfusion. A total of 156 patients with unilateral hypoperfusion of the middle cerebral artery territory formed the study cohort; 352 patients without hypoperfusion served as controls. We performed blinded reading of different perfusion maps for the presence of crossed cerebellar diaschisis and determined the relative supratentorial and cerebellar perfusion reduction. Moreover, imaging patterns (location and volume of hypoperfusion) and clinical factors (age, sex, time from symptom onset) resulting in crossed cerebellar diaschisis were analysed. Crossed cerebellar diaschisis was detected in 35.3% of the patients with middle cerebral artery infarction. Crossed cerebellar diaschisis was significantly associated with hypoperfusion involving the left hemisphere, the frontal lobe and the thalamus. The degree of the relative supratentorial perfusion reduction was significantly more pronounced in crossed cerebellar diaschisis-positive patients but did not correlate with the relative cerebellar perfusion reduction. Our data suggest that (i) crossed cerebellar diaschisis is a common feature after middle cerebral artery infarction which can robustly be detected using whole-brain CT perfusion, (ii) its occurrence is influenced by location and degree of the supratentorial perfusion reduction rather than infarct volume (iii) other clinical factors (age, sex and time from symptom onset) did not affect the occurrence of crossed cerebellar diaschisis. © The Author(s) 2015.

Developing a chloramine decay index to understand nitrification: A case study of two chloraminated drinking water distribution systems.

PubMed

Moradi, Sina; Liu, Sanly; Chow, Christopher W K; van Leeuwen, John; Cook, David; Drikas, Mary; Amal, Rose

2017-07-01

The management of chloramine decay and the prevention of nitrification are some of the critical issues faced by water utilities that use chloramine as a disinfectant. In this study, potential association between high performance size exclusion chromatography (HPSEC) data obtained with multiple wavelength Ultraviolet (UV) detection from two drinking water distribution systems in Australia and nitrification occurrence was investigated. An increase in the absorbance signal of HPSEC profiles with UV detection at λ=230nm between apparent molecular weights of 200 to 1000Da was observed at sampling sites that experienced rapid chloramine decay and nitrification while its absorbance signal at λ=254nm decreased. A chloramine decay index (C.D.I) defined as the ratio of area beneath the HPSEC spectra at two different wavelengths of 230 and 254nm, was used in assessing chloramine decay occurrences. The C.D.Is of waters at locations that experienced nitrification were consistently higher than locations not experiencing nitrification. A simulated laboratory study showed that the formation of nitrite/nitrate and/or soluble microbial products and/or the release of extracellular polymeric substances (EPS) during nitrification may contribute to the C.D.I. increase. These findings suggest that C.D.I derived from HPSEC with multiple wavelength UV detection could be an informative index to track the occurrence of rapid chloramine decay and nitrification. Copyright © 2016. Published by Elsevier B.V.

Indo-Pacific humpback dolphin occurrence north of Lantau Island, Hong Kong, based on year-round passive acoustic monitoring.

PubMed

Munger, Lisa; Lammers, Marc O; Cifuentes, Mattie; Würsig, Bernd; Jefferson, Thomas A; Hung, Samuel K

2016-10-01

Long-term passive acoustic monitoring (PAM) was conducted to study Indo-Pacific humpback dolphins, Sousa chinensis, as part of environmental impact assessments for several major coastal development projects in Hong Kong waters north of Lantau Island. Ecological acoustic recorders obtained 2711 days of recording at 13 sites from December 2012 to December 2014. Humpback dolphin sounds were manually detected on more than half of days with recordings at 12 sites, 8 of which were within proposed reclamation areas. Dolphin detection rates were greatest at Lung Kwu Chau, with other high-occurrence locations northeast of the Hong Kong International Airport and within the Lung Kwu Tan and Siu Ho Wan regions. Dolphin detection rates were greatest in summer and autumn (June-November) and were significantly reduced in spring (March-May) compared to other times of year. Click detection rates were significantly higher at night than during daylight hours. These findings suggest high use of many of the proposed reclamation/development areas by humpback dolphins, particularly at night, and demonstrate the value of long-term PAM for documenting spatial and temporal patterns in dolphin occurrence to help inform management decisions.

Dependence of present and future European heat waves and cold spells on the location of atmospheric blocking

NASA Astrophysics Data System (ADS)

Brunner, L.; Schaller, N.; Sillmann, J.; Steiner, A. K.

2017-12-01

Atmospheric blocking describes stationary anti-cyclones, which weaken or reverse the climatological flow at mid-latitudes. In the northern hemisphere one of the main blocking regions is located over the North Atlantic and Northern Europe. The link between blocking and European temperature extremes, such as heat waves and cold spells, strongly depends on several aspects like season, longitudinal location of the block, and location of the extremes (particularly Northern Europe versus Southern Europe). We use a 50-member ensemble of the Canadian CanESM2 model to investigate historical (1981-2010) and future (2070-2099) blocking cases and their relationship with European temperature extremes. For the historical period the model results are also compared to those from the ERA-Interim reanalysis. Atmospheric blocking is detected on a daily basis in different 30° longitude windows between 60°W and 60°E, using a standard geopotential height-based detection index. Temperature extremes are defined by the daily Heat/Cold Wave Magnitude Index (HWMId/CWMId). The role of cold advection is found particularly important in winter conditions leading to a more than threefold increase in cold wave occurrence during blocking between 60°W and 0°. During blocking over Northern Europe (0° to 60°E) a split relationship is found with cold wave occurrence being strongly increased in Southern Europe, while it is decreased in Northern Europe. Direct, radiative effects dominate in summer, therefore blocking westward of Europe has a weaker effect, while blocking over Northern Europe leads to an increase of heat waves by at least a factor three at the location of the block and a decrease in cold wave occurrence in almost all of Europe. Comparing the historical and future period we find the link between blocking and temperature extremes in Europe to be robust, even though blocking frequency and temperatures are changing.

Occupancy estimation and modeling with multiple states and state uncertainty

USGS Publications Warehouse

Nichols, J.D.; Hines, J.E.; MacKenzie, D.I.; Seamans, M.E.; Gutierrez, R.J.

2007-01-01

The distribution of a species over space is of central interest in ecology, but species occurrence does not provide all of the information needed to characterize either the well-being of a population or the suitability of occupied habitat. Recent methodological development has focused on drawing inferences about species occurrence in the face of imperfect detection. Here we extend those methods by characterizing occupied locations by some additional state variable ( e. g., as producing young or not). Our modeling approach deals with both detection probabilities,1 and uncertainty in state classification. We then use the approach with occupancy and reproductive rate data from California Spotted Owls (Strix occidentalis occidentalis) collected in the central Sierra Nevada during the breeding season of 2004 to illustrate the utility of the modeling approach. Estimates of owl reproductive rate were larger than naive estimates, indicating the importance of appropriately accounting for uncertainty in detection and state classification.

Invasive Species Distribution Modeling (iSDM): Are absence data and dispersal constraints needed to predict actual distributions?

Treesearch

Tomáš Václavík; Ross K. Meentemeyer

2009-01-01

Species distribution models (SDMs) based on statistical relationships between occurrence data and underlying environmental conditions are increasingly used to predict spatial patterns of biological invasions and prioritize locations for early detection and control of invasion outbreaks. However, invasive species distribution models (iSDMs) face special challenges...

Passive acoustic monitoring of Cook Inlet beluga whales (Delphinapterus leucas).

PubMed

Lammers, Marc O; Castellote, Manuel; Small, Robert J; Atkinson, Shannon; Jenniges, Justin; Rosinski, Anne; Oswald, Julie N; Garner, Chris

2013-09-01

The endangered beluga whale (Delphinapterus leucas) population in Cook Inlet, AK faces threats from a variety of anthropogenic factors, including coastal development, oil and gas exploration, vessel traffic, and military activities. To address existing gaps in understanding about the occurrence of belugas in Cook Inlet, a project was developed to use passive acoustic monitoring to document the year-round distribution of belugas, as well as killer whales (Orcinus orca), which prey on belugas. Beginning in June 2009, ten moorings were deployed throughout the Inlet and refurbished every two to eight months. Despite challenging conditions consisting of strong tidal currents carrying debris and seasonal ice cover, 83% of mooring deployments were successfully recovered. Noise from water flow, vessel traffic, and/or industrial activities was present at several sites, potentially masking some signals. However, belugas were successfully detected at multiple locations. Detections were relatively common in the upper inlet and less common or absent at middle and lower inlet locations. Killer whale signals were also recorded. Some seasonal variability in the occurrence of both belugas and killer whales was evident.

Occurrence and pathogenicity of Naegleria fowleri in artificially heated waters.

PubMed Central

Sykora, J L; Keleti, G; Martinez, A J

1983-01-01

The occurrence of pathogenic Naegleria fowleri in thermal discharges, recipient waters, and cooling towers of eight power plants located in western Pennsylvania was investigated for 2 years in conjunction with several environmental measurements. Pathogenic N. fowleri was detected in one cooling tower and in the discharge, receiving waters, or both of five of eight localities. The occurrence of this organism was related to elevated temperatures, but no significant correlation was found for other biological and chemical parameters. Laboratory experiments on the effect of pH on pathogenic N. fowleri documented 100% survival at a range from 2.1 to 8.15. Higher pH reduced or killed the amoebae. No case of human primary amoebic meningoencephalitis occurred during the study. PMID:6847189

Occurrence and pathogenicity of Naegleria fowleri in artificially heated waters

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sykora, J.L.; Keleti, G.; Martinez, A.J.

1983-03-01

The occurrence of pathogenic Naegleria fowleri in thermal discharges, recipient waters, and cooling towers of eight power plants located in western Pennsylvania was investigated for 2 years in conjunction with several environmental measurements. Pathogenic N. fowleri was detected in one cooling tower and in the discharge, receiving waters, or both of five of eight localities. The occurrence of this organism was related to elevated temperatures, but no significant correlation was found for other biological and chemical parameters. Laboratory experiments on the effect of pH on pathogenic N. fowleri documented 100% survival at a range from 2.1 to 8.15. Higher pHmore » reduced or killed the amoebae. No case of human primary amoebic meningoencephalitis occurred during the study.« less

Occurrence of waterborne pathogens and Escherichia coli at offshore drinking water intakes in lake Ontario.

PubMed

Edge, T A; Khan, I U H; Bouchard, R; Guo, J; Hill, S; Locas, A; Moore, L; Neumann, N; Nowak, E; Payment, P; Yang, R; Yerubandi, R; Watson, S

2013-10-01

The occurrence of waterborne pathogens was investigated at three drinking water intakes located about 2 km offshore in Lake Ontario. Water sampling was conducted over 3 years for Campylobacter spp., Cryptosporidium spp., Giardia spp., cultivable enteric viruses, and water quality parameters. All pathogens were detected in the offshore source water for each water treatment plant (WTP1 to WTP3), although at relatively low frequencies and concentrations. Giardia was the most common pathogen, occurring in 36% of water samples from the influent of WTP1 (n = 46), and with a maximum concentration of 0.70 cysts/liter in this influent. Cryptosporidium occurred as frequently as 15% in the WTP2 influent (n = 35), with a maximum concentration of 0.40 oocysts/liter in the WTP1 influent. The human Bacteroidales HF183 DNA marker was most common in the WTP1 influent (19%), and this was the only WTP where the Cryptosporidium hominis genotype was detected. No water quality parameter was predictive of pathogen occurrence across all three WTP influents. Escherichia coli was often below detection when pathogens were detected, and spikes in E. coli concentrations often did not coincide with pathogen occurrence. After summer rain events, river plumes had E. coli concentrations as high as 222 CFU/100 ml in surface waters 2 km offshore, without impacting drinking water intakes below the thermocline on the lake bottom. At times, prechlorination to control mussels at offshore intake cribs compromised the use of E. coli for "raw" water quality assessment, particularly for chlorine-resistant Cryptosporidium. E. coli measured by standard methods did not reliably predict pathogen occurrence at drinking water intakes in offshore ecosystems.

Occurrence of Waterborne Pathogens and Escherichia coli at Offshore Drinking Water Intakes in Lake Ontario

PubMed Central

Khan, I. U. H.; Bouchard, R.; Guo, J.; Hill, S.; Locas, A.; Moore, L.; Neumann, N.; Nowak, E.; Payment, P.; Yang, R.; Yerubandi, R.; Watson, S.

2013-01-01

The occurrence of waterborne pathogens was investigated at three drinking water intakes located about 2 km offshore in Lake Ontario. Water sampling was conducted over 3 years for Campylobacter spp., Cryptosporidium spp., Giardia spp., cultivable enteric viruses, and water quality parameters. All pathogens were detected in the offshore source water for each water treatment plant (WTP1 to WTP3), although at relatively low frequencies and concentrations. Giardia was the most common pathogen, occurring in 36% of water samples from the influent of WTP1 (n = 46), and with a maximum concentration of 0.70 cysts/liter in this influent. Cryptosporidium occurred as frequently as 15% in the WTP2 influent (n = 35), with a maximum concentration of 0.40 oocysts/liter in the WTP1 influent. The human Bacteroidales HF183 DNA marker was most common in the WTP1 influent (19%), and this was the only WTP where the Cryptosporidium hominis genotype was detected. No water quality parameter was predictive of pathogen occurrence across all three WTP influents. Escherichia coli was often below detection when pathogens were detected, and spikes in E. coli concentrations often did not coincide with pathogen occurrence. After summer rain events, river plumes had E. coli concentrations as high as 222 CFU/100 ml in surface waters 2 km offshore, without impacting drinking water intakes below the thermocline on the lake bottom. At times, prechlorination to control mussels at offshore intake cribs compromised the use of E. coli for “raw” water quality assessment, particularly for chlorine-resistant Cryptosporidium. E. coli measured by standard methods did not reliably predict pathogen occurrence at drinking water intakes in offshore ecosystems. PMID:23835181

Detection of traffic incidents using nonlinear time series analysis

NASA Astrophysics Data System (ADS)

Fragkou, A. D.; Karakasidis, T. E.; Nathanail, E.

2018-06-01

In this study, we present results of the application of nonlinear time series analysis on traffic data for incident detection. More specifically, we analyze daily volume records of Attica Tollway (Greece) collected from sensors located at various locations. The analysis was performed using the Recurrence Plot (RP) and Recurrence Quantification Analysis (RQA) method of the volume data of the lane closest to the median. The results show that it is possible to identify, through the abrupt change of the dynamics of the system revealed by RPs and RQA, the occurrence of incidents on the freeway and differentiate from recurrent traffic congestion. The proposed methodology could be of interest for big data traffic analysis.

Continuous catchment-scale monitoring of geomorphic processes with a 2-D seismological array

NASA Astrophysics Data System (ADS)

Burtin, A.; Hovius, N.; Milodowski, D.; Chen, Y.-G.; Wu, Y.-M.; Lin, C.-W.; Chen, H.

2012-04-01

The monitoring of geomorphic processes during extreme climatic events is of a primary interest to estimate their impact on the landscape dynamics. However, available techniques to survey the surface activity do not provide a relevant time and/or space resolution. Furthermore, these methods hardly investigate the dynamics of the events since their detection are made a posteriori. To increase our knowledge of the landscape evolution and the influence of extreme climatic events on a catchment dynamics, we need to develop new tools and procedures. In many past works, it has been shown that seismic signals are relevant to detect and locate surface processes (landslides, debris flows). During the 2010 typhoon season, we deployed a network of 12 seismometers dedicated to monitor the surface processes of the Chenyoulan catchment in Taiwan. We test the ability of a two dimensional array and small inter-stations distances (~ 11 km) to map in continuous and at a catchment-scale the geomorphic activity. The spectral analysis of continuous records shows a high-frequency (> 1 Hz) seismic energy that is coherent with the occurrence of hillslope and river processes. Using a basic detection algorithm and a location approach running on the analysis of seismic amplitudes, we manage to locate the catchment activity. We mainly observe short-time events (> 300 occurrences) associated with debris falls and bank collapses during daily convective storms, where 69% of occurrences are coherent with the time distribution of precipitations. We also identify a couple of debris flows during a large tropical storm. In contrast, the FORMOSAT imagery does not detect any activity, which somehow reflects the lack of extreme climatic conditions during the experiment. However, high resolution pictures confirm the existence of links between most of geomorphic events and existing structures (landslide scars, gullies...). We thus conclude to an activity that is dominated by reactivation processes. It highlights the major interest of a seismic monitoring since it allows a detailed spatial and temporal survey of events that classic approaches are not able to observe. In the future, dense two dimensional seismological arrays will assess in real-time the landscape dynamics of an entire catchment, tracking sediments from slopes to rivers.

Plate tectonics. Seismological detection of slab metamorphism.

PubMed

Julian, Bruce

2002-05-31

The occurrence of more or less continuous ground vibrations ("volcanic tremor") is an important indicator of volcanic activity. But results from the "Hi-net" seismic network in Japan reported by Obara show that continuous ground vibrations can occur far away from any volcanic activity. In his Perspective, Julian discusses the idea that this tremor is excited by flow of metamorphic fluids. He also identifies other possible locations where such a tremor may be detected and explains what may be learnt from measuring it.

Vascular plant flora of the alpine zone in the southern Rocky Mountains, U.S.A

Treesearch

James F. Fowler; B. E. Nelson; Ronald L. Hartman

2014-01-01

Field detection of changes in occurrence, distribution, or abundance of alpine plant species is predicated on knowledge of which species are in specific locations. The alpine zone of the Southern Rocky Mountain Region has been systematically inventoried by the staff and floristics graduate students from the Rocky Mountain Herbarium over the last 27 years. It is...

Pattern detection in forensic case data using graph theory: application to heroin cutting agents.

PubMed

Terrettaz-Zufferey, Anne-Laure; Ratle, Frédéric; Ribaux, Olivier; Esseiva, Pierre; Kanevski, Mikhail

2007-04-11

Pattern recognition techniques can be very useful in forensic sciences to point out to relevant sets of events and potentially encourage an intelligence-led style of policing. In this study, these techniques have been applied to categorical data corresponding to cutting agents found in heroin seizures. An application of graph theoretic methods has been performed, in order to highlight the possible relationships between the location of seizures and co-occurrences of particular heroin cutting agents. An analysis of the co-occurrences to establish several main combinations has been done. Results illustrate the practical potential of mathematical models in forensic data analysis.

Spatial variation of deep diving odontocetes' occurrence around a canyon region in the Ligurian Sea as measured with acoustic techniques

NASA Astrophysics Data System (ADS)

Giorli, Giacomo; Neuheimer, Anna; Au, Whitlow

2016-10-01

Understanding the distribution of animals is of paramount importance for management and conservation, especially for species that are impacted by anthropogenic threats. In the case of marine mammals there has been a growing concern about the impact of human-made noise, in particular for beaked whales and other deep diving odontocetes. Foraging (measured via echolocation clicks at depth) was studied for Cuvier's beaked whale (Ziphius cavirostris), sperm whale (Physeter macrocephalus), long-finned pilot whales (Globicephala melas) and Risso's dolphin (Grampus griseus) using three passive acoustics recorders moored to the bottom of the ocean in a canyon area in the Ligurian Sea between July and December 2011. A Generalized Linear Model was used to test whether foraging was influenced by location and day of the year, including the possibility of interactions between predictors. Contrary to previous studies conducted by visual surveys in this area, all species were detected at all locations, suggesting habitat overlapping. However, significant differences were found in the occurrence of each species at different locations. Beaked and sperm whales foraged significantly more in the northern and western locations, while long-finned pilot whales and Risso's dolphins hunted more in the northern and eastern location.

Distributed road assessment system

DOEpatents

Beer, N. Reginald; Paglieroni, David W

2014-03-25

A system that detects damage on or below the surface of a paved structure or pavement is provided. A distributed road assessment system includes road assessment pods and a road assessment server. Each road assessment pod includes a ground-penetrating radar antenna array and a detection system that detects road damage from the return signals as the vehicle on which the pod is mounted travels down a road. Each road assessment pod transmits to the road assessment server occurrence information describing each occurrence of road damage that is newly detected on a current scan of a road. The road assessment server maintains a road damage database of occurrence information describing the previously detected occurrences of road damage. After the road assessment server receives occurrence information for newly detected occurrences of road damage for a portion of a road, the road assessment server determines which newly detected occurrences correspond to which previously detected occurrences of road damage.

Occurrence of Pesticides in Ground Water of Wyoming, 1995-2006

USGS Publications Warehouse

Bartos, Timothy T.; Eddy-Miller, Cheryl A.; Hallberg, Laura L.

2009-01-01

Little existing information was available describing pesticide occurrence in ground water of Wyoming, so the U.S. Geological Survey, in cooperation with the Wyoming Department of Agriculture and the Wyoming Department of Environmental Quality on behalf of the Wyoming Ground-water and Pesticides Strategy Committee, collected ground-water samples twice (during late summer/early fall and spring) from 296 wells during 1995-2006 to characterize pesticide occurrence. Sampling focused on the State's ground water that was mapped as the most vulnerable to pesticide contamination because of either inherent hydrogeologic sensitivity (for example, shallow water table or highly permeable aquifer materials) or a combination of sensitivity and associated land use. Because of variations in reporting limits among different compounds and for the same compound during this study, pesticide detections were recensored to two different assessment levels to facilitate qualitative and quantitative examination of pesticide detection frequencies - a common assessment level (CAL) of 0.07 microgram per liter and an assessment level that differed by compound, referred to herein as a compound-specific assessment level (CSAL). Because of severe data censoring (fewer than 50 percent of the data are greater than laboratory reporting limits), categorical statistical methods were used exclusively for quantitative comparisons of pesticide detection frequencies between seasons and among various natural and anthropogenic (human-related) characteristics. One or more pesticides were detected at concentrations greater than the CAL in water from about 23 percent of wells sampled in the fall and from about 22 percent of wells sampled in the spring. Mixtures of two or more pesticides occurred at concentrations greater than the CAL in about 9 percent of wells sampled in the fall and in about 10 percent of wells sampled in the spring. At least 74 percent of pesticides detected were classified as herbicides. Considering only detections using the CAL, triazine pesticides were detected much more frequently than all other pesticide classes, and the number of different pesticides classified as triazines was the largest of all classes. More pesticides were detected at concentrations greater than the CSALs in water from wells sampled in the fall (28 different pesticides) than in the spring (21 different pesticides). Many pesticides were detected infrequently as nearly one-half of pesticides detected in the fall and spring at concentrations greater than the CSALs were detected only in one well. Using the CSALs for pesticides analyzed for in 11 or more wells, only five pesticides (atrazine, prometon, tebuthiuron, picloram, and 3,4-dichloroaniline, listed in order of decreasing detection frequency) were each detected in water from more than 5 percent of sampled wells. Atrazine was the pesticide detected most frequently at concentrations greater than the CSAL. Concentrations of detected pesticides generally were small (less than 1 microgram per liter), although many infrequent detections at larger concentrations were noted. All detected pesticide concentrations were smaller than U.S. Environmental Protection Agency (USEPA) drinking-water standards or applicable health advisories. Most concentrations were at least an order of magnitude smaller; however, many pesticides did not have standards or advisories. The largest percentage of pesticide detections and the largest number of different pesticides detected were in samples from wells located in the Bighorn Basin and High Plains/ Casper Arch geographic areas of north-central and southeastern Wyoming. Prometon was the only pesticide detected in all eight geographic areas of the State. Pesticides were detected much more frequently in samples from wells located in predominantly urban areas than in samples from wells located in predominantly agricultural or mixed areas. Pesticides were detected distinctly less often in sa

Environmental DNA (eDNA) Sampling Improves Occurrence and Detection Estimates of Invasive Burmese Pythons

PubMed Central

Hunter, Margaret E.; Oyler-McCance, Sara J.; Dorazio, Robert M.; Fike, Jennifer A.; Smith, Brian J.; Hunter, Charles T.; Reed, Robert N.; Hart, Kristen M.

2015-01-01

Environmental DNA (eDNA) methods are used to detect DNA that is shed into the aquatic environment by cryptic or low density species. Applied in eDNA studies, occupancy models can be used to estimate occurrence and detection probabilities and thereby account for imperfect detection. However, occupancy terminology has been applied inconsistently in eDNA studies, and many have calculated occurrence probabilities while not considering the effects of imperfect detection. Low detection of invasive giant constrictors using visual surveys and traps has hampered the estimation of occupancy and detection estimates needed for population management in southern Florida, USA. Giant constrictor snakes pose a threat to native species and the ecological restoration of the Florida Everglades. To assist with detection, we developed species-specific eDNA assays using quantitative PCR (qPCR) for the Burmese python (Python molurus bivittatus), Northern African python (P. sebae), boa constrictor (Boa constrictor), and the green (Eunectes murinus) and yellow anaconda (E. notaeus). Burmese pythons, Northern African pythons, and boa constrictors are established and reproducing, while the green and yellow anaconda have the potential to become established. We validated the python and boa constrictor assays using laboratory trials and tested all species in 21 field locations distributed in eight southern Florida regions. Burmese python eDNA was detected in 37 of 63 field sampling events; however, the other species were not detected. Although eDNA was heterogeneously distributed in the environment, occupancy models were able to provide the first estimates of detection probabilities, which were greater than 91%. Burmese python eDNA was detected along the leading northern edge of the known population boundary. The development of informative detection tools and eDNA occupancy models can improve conservation efforts in southern Florida and support more extensive studies of invasive constrictors. Generic sampling design and terminology are proposed to standardize and clarify interpretations of eDNA-based occupancy models. PMID:25874630

Environmental DNA (eDNA) sampling improves occurrence and detection estimates of invasive Burmese pythons

USGS Publications Warehouse

Hunter, Margaret E.; Oyler-McCance, Sara J.; Dorazio, Robert M.; Fike, Jennifer A.; Smith, Brian J.; Hunter, Charles T.; Reed, Robert N.; Hart, Kristen M.

2015-01-01

Environmental DNA (eDNA) methods are used to detect DNA that is shed into the aquatic environment by cryptic or low density species. Applied in eDNA studies, occupancy models can be used to estimate occurrence and detection probabilities and thereby account for imperfect detection. However, occupancy terminology has been applied inconsistently in eDNA studies, and many have calculated occurrence probabilities while not considering the effects of imperfect detection. Low detection of invasive giant constrictors using visual surveys and traps has hampered the estimation of occupancy and detection estimates needed for population management in southern Florida, USA. Giant constrictor snakes pose a threat to native species and the ecological restoration of the Florida Everglades. To assist with detection, we developed species-specific eDNA assays using quantitative PCR (qPCR) for the Burmese python (Python molurus bivittatus), Northern African python (P. sebae), boa constrictor (Boa constrictor), and the green (Eunectes murinus) and yellow anaconda (E. notaeus). Burmese pythons, Northern African pythons, and boa constrictors are established and reproducing, while the green and yellow anaconda have the potential to become established. We validated the python and boa constrictor assays using laboratory trials and tested all species in 21 field locations distributed in eight southern Florida regions. Burmese python eDNA was detected in 37 of 63 field sampling events; however, the other species were not detected. Although eDNA was heterogeneously distributed in the environment, occupancy models were able to provide the first estimates of detection probabilities, which were greater than 91%. Burmese python eDNA was detected along the leading northern edge of the known population boundary. The development of informative detection tools and eDNA occupancy models can improve conservation efforts in southern Florida and support more extensive studies of invasive constrictors. Generic sampling design and terminology are proposed to standardize and clarify interpretations of eDNA-based occupancy models.

Environmental DNA (eDNA) sampling improves occurrence and detection estimates of invasive burmese pythons.

PubMed

Hunter, Margaret E; Oyler-McCance, Sara J; Dorazio, Robert M; Fike, Jennifer A; Smith, Brian J; Hunter, Charles T; Reed, Robert N; Hart, Kristen M

2015-01-01

Environmental DNA (eDNA) methods are used to detect DNA that is shed into the aquatic environment by cryptic or low density species. Applied in eDNA studies, occupancy models can be used to estimate occurrence and detection probabilities and thereby account for imperfect detection. However, occupancy terminology has been applied inconsistently in eDNA studies, and many have calculated occurrence probabilities while not considering the effects of imperfect detection. Low detection of invasive giant constrictors using visual surveys and traps has hampered the estimation of occupancy and detection estimates needed for population management in southern Florida, USA. Giant constrictor snakes pose a threat to native species and the ecological restoration of the Florida Everglades. To assist with detection, we developed species-specific eDNA assays using quantitative PCR (qPCR) for the Burmese python (Python molurus bivittatus), Northern African python (P. sebae), boa constrictor (Boa constrictor), and the green (Eunectes murinus) and yellow anaconda (E. notaeus). Burmese pythons, Northern African pythons, and boa constrictors are established and reproducing, while the green and yellow anaconda have the potential to become established. We validated the python and boa constrictor assays using laboratory trials and tested all species in 21 field locations distributed in eight southern Florida regions. Burmese python eDNA was detected in 37 of 63 field sampling events; however, the other species were not detected. Although eDNA was heterogeneously distributed in the environment, occupancy models were able to provide the first estimates of detection probabilities, which were greater than 91%. Burmese python eDNA was detected along the leading northern edge of the known population boundary. The development of informative detection tools and eDNA occupancy models can improve conservation efforts in southern Florida and support more extensive studies of invasive constrictors. Generic sampling design and terminology are proposed to standardize and clarify interpretations of eDNA-based occupancy models.

Spatial cluster detection for repeatedly measured outcomes while accounting for residential history.

PubMed

Cook, Andrea J; Gold, Diane R; Li, Yi

2009-10-01

Spatial cluster detection has become an important methodology in quantifying the effect of hazardous exposures. Previous methods have focused on cross-sectional outcomes that are binary or continuous. There are virtually no spatial cluster detection methods proposed for longitudinal outcomes. This paper proposes a new spatial cluster detection method for repeated outcomes using cumulative geographic residuals. A major advantage of this method is its ability to readily incorporate information on study participants relocation, which most cluster detection statistics cannot. Application of these methods will be illustrated by the Home Allergens and Asthma prospective cohort study analyzing the relationship between environmental exposures and repeated measured outcome, occurrence of wheeze in the last 6 months, while taking into account mobile locations.

Suitability of artificial sweeteners as indicators of raw wastewater contamination in surface water and groundwater.

PubMed

Tran, Ngoc Han; Hu, Jiangyong; Li, Jinhua; Ong, Say Leong

2014-01-01

There is no quantitative data on the occurrence of artificial sweeteners in the aquatic environment in Southeast Asian countries, particularly no information on their suitability as indicators of raw wastewater contamination on surface water and groundwater. This study provided the first quantitative information on the occurrence of artificial sweeteners in raw wastewater, surface water and groundwater in the urban catchment area in Singapore. Acesulfame, cyclamate, saccharin, and sucralose were ubiquitous in raw wastewater samples at concentrations in the range of ng/L-μg/L, while other sweeteners were not found or found only in a few of the raw wastewater samples. Residential and commercial effluents were demonstrated to be the two main sources of artificial sweeteners entering the municipal sewer systems. Relatively higher concentrations of the detected sweeteners were frequently found in surface waters at the sampling sites located in the residential/commercial areas. No significant difference in the concentrations of the detected sweeteners in surface water or groundwater was noted between wet and dry weather conditions (unpaired T-test, p> 0.05). Relatively higher concentrations and detection frequencies of acesulfame, cyclamate and saccharin in surface water samples were observed at the potentially impacted sampling sites, while these sweeteners were absent in most of the background surface water samples. Similarly, acesulfame, cyclamate, and saccharin were found in most groundwater samples at the monitoring well (GW6), which is located close to known leaking sewer segment; whereas these were absent in the background monitoring well, which is located in the catchment with no known wastewater sources. Taken together, the results suggest that acesulfame, cyclamate, and saccharin can be used as potential indicators of raw wastewater contamination in surface water and groundwater. Copyright © 2013 Elsevier Ltd. All rights reserved.

Monitoring the Presence of 13 Active Compounds in Surface Water Collected from Rural Areas in Northwestern Spain

PubMed Central

Iglesias, Alejandra; Nebot, Carolina; Vázquez, Beatriz I.; Coronel-Olivares, Claudia; Franco Abuín, Carlos M.; Cepeda, Alberto

2014-01-01

Drug residues are considered environmental contaminants, and their occurrence has recently become a matter of concern. Analytical methods and monitoring systems are therefore required to control the continuous input of these drug residues into the environment. This article presents a suitable HPLC-ESI-MS/MS method for the simultaneous extraction, detection and quantification of residues of 13 drugs (antimicrobials, glucocorticosteroids, anti-inflammatories, anti-hypertensives, anti-cancer drugs and triphenylmethane dyes) in surface water. A monitoring study with 549 water samples was carried out in northwestern Spain to detect the presence of drug residues over two sampling periods during 2010, 2011 and 2012. Samples were collected from rural areas with and without farming activity and from urban areas. The 13 analytes were detected, and 18% of the samples collected showed positive results for the presence of at least one analyte. More collection sites were located in rural areas than in urban areas. However, more positive samples with higher concentrations and a larger number of analytes were detected in samples collected from sites located after the discharge of a WWTP. Results indicated that the WWTPs seems to act as a concentration point. Positive samples were also detected at a site located near a drinking water treatment plant. PMID:24837665

Monitoring the presence of 13 active compounds in surface water collected from rural areas in northwestern Spain.

PubMed

Iglesias, Alejandra; Nebot, Carolina; Vázquez, Beatriz I; Coronel-Olivares, Claudia; Abuín, Carlos M Franco; Cepeda, Alberto

2014-05-15

Drug residues are considered environmental contaminants, and their occurrence has recently become a matter of concern. Analytical methods and monitoring systems are therefore required to control the continuous input of these drug residues into the environment. This article presents a suitable HPLC-ESI-MS/MS method for the simultaneous extraction, detection and quantification of residues of 13 drugs (antimicrobials, glucocorticosteroids, anti-inflammatories, anti-hypertensives, anti-cancer drugs and triphenylmethane dyes) in surface water. A monitoring study with 549 water samples was carried out in northwestern Spain to detect the presence of drug residues over two sampling periods during 2010, 2011 and 2012. Samples were collected from rural areas with and without farming activity and from urban areas. The 13 analytes were detected, and 18% of the samples collected showed positive results for the presence of at least one analyte. More collection sites were located in rural areas than in urban areas. However, more positive samples with higher concentrations and a larger number of analytes were detected in samples collected from sites located after the discharge of a WWTP. Results indicated that the WWTPs seems to act as a concentration point. Positive samples were also detected at a site located near a drinking water treatment plant.

Abundance models improve spatial and temporal prioritization of conservation resources.

PubMed

Johnston, Alison; Fink, Daniel; Reynolds, Mark D; Hochachka, Wesley M; Sullivan, Brian L; Bruns, Nicholas E; Hallstein, Eric; Merrifield, Matt S; Matsumoto, Sandi; Kelling, Steve

2015-10-01

Conservation prioritization requires knowledge about organism distribution and density. This information is often inferred from models that estimate the probability of species occurrence rather than from models that estimate species abundance, because abundance data are harder to obtain and model. However, occurrence and abundance may not display similar patterns and therefore development of robust, scalable, abundance models is critical to ensuring that scarce conservation resources are applied where they can have the greatest benefits. Motivated by a dynamic land conservation program, we develop and assess a general method for modeling relative abundance using citizen science monitoring data. Weekly estimates of relative abundance and occurrence were compared for prioritizing times and locations of conservation actions for migratory waterbird species in California, USA. We found that abundance estimates consistently provided better rankings of observed counts than occurrence estimates. Additionally, the relationship between abundance and occurrence was nonlinear and varied by species and season. Across species, locations prioritized by occurrence models had only 10-58% overlap with locations prioritized by abundance models, highlighting that occurrence models will not typically identify the locations of highest abundance that are vital for conservation of populations.

Occurrence and spatial distribution of chemical contaminants in edible fish species collected from UK and proximate marine waters.

PubMed

Fernandes, A R; Mortimer, D; Holmes, M; Rose, M; Zhihua, L; Huang, X; Smith, F; Panton, S; Marshall, L

2018-05-01

The occurrence of a range of regulated and emerging organic environmental contaminants was investigated in 182 samples of edible marine fish sampled mainly from UK marine regions, but extending northerly to the coast of Norway and south to the Algarve. These species (sprats, mackerel, turbot, halibut, herring, grey mullet, sea bass, grey mullet, sardines, etc.) are among those considered to be at the highest risk of contamination with regulated contaminants such as polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDD/Fs, dioxins), and polychlorinated biphenyls (PCBs), but the occurrence of polybrominated diphenylethers (PBDEs) and polybrominated biphenyls (PBBs) was also investigated. Sub-sets of samples (50-75) were also analysed for emerging contaminants: polychlorinated naphthalenes (PCNs), polybrominated and mixed halogenated dibenzo-p-dioxins, dibenzofurans and biphenyls (PBDD/Fs, PXDD/Fs and PXBs) and perfluoroalkyl substances (PFAS). Contaminant occurrence varied with species and location, but all measured contaminants were detected, with sprats, sea bass, sardines, mackerel, and herring showing higher tissue concentrations. The concentrations of the different contaminants in the various samples were mapped utilising the GPS coordinate data of the capture locations to visualise spatial distribution levels. In terms of catch location, fish sampled from the coasts of southern Britain, north-western France and the Irish Sea appeared to contain proportionately higher levels of some contaminants - e.g. samples from the Irish Sea tended to show higher PCN concentrations, whereas higher levels of PCBs were observed in some fish sampled off the coasts of northern France. Similarly, samples of mullet from the southeast coast of UK showed much higher concentrations of BDE-99 than the other regions. In terms of occurrence trends, PCDD/F and PCB concentrations show a modest decline over the last decade but where limited background data is available for emerging contaminants, there is no evidence of downward trends. Copyright © 2018 Elsevier Ltd. All rights reserved.

Estimating abundance while accounting for rarity, correlated behavior, and other sources of variation in counts

USGS Publications Warehouse

Dorazio, Robert M.; Martin, Juulien; Edwards, Holly H.

2013-01-01

The class of N-mixture models allows abundance to be estimated from repeated, point count surveys while adjusting for imperfect detection of individuals. We developed an extension of N-mixture models to account for two commonly observed phenomena in point count surveys: rarity and lack of independence induced by unmeasurable sources of variation in the detectability of individuals. Rarity increases the number of locations with zero detections in excess of those expected under simple models of abundance (e.g., Poisson or negative binomial). Correlated behavior of individuals and other phenomena, though difficult to measure, increases the variation in detection probabilities among surveys. Our extension of N-mixture models includes a hurdle model of abundance and a beta-binomial model of detectability that accounts for additional (extra-binomial) sources of variation in detections among surveys. As an illustration, we fit this model to repeated point counts of the West Indian manatee, which was observed in a pilot study using aerial surveys. Our extension of N-mixture models provides increased flexibility. The effects of different sets of covariates may be estimated for the probability of occurrence of a species, for its mean abundance at occupied locations, and for its detectability.

Estimating abundance while accounting for rarity, correlated behavior, and other sources of variation in counts.

PubMed

Dorazio, Robert M; Martin, Julien; Edwards, Holly H

2013-07-01

The class of N-mixture models allows abundance to be estimated from repeated, point count surveys while adjusting for imperfect detection of individuals. We developed an extension of N-mixture models to account for two commonly observed phenomena in point count surveys: rarity and lack of independence induced by unmeasurable sources of variation in the detectability of individuals. Rarity increases the number of locations with zero detections in excess of those expected under simple models of abundance (e.g., Poisson or negative binomial). Correlated behavior of individuals and other phenomena, though difficult to measure, increases the variation in detection probabilities among surveys. Our extension of N-mixture models includes a hurdle model of abundance and a beta-binomial model of detectability that accounts for additional (extra-binomial) sources of variation in detections among surveys. As an illustration, we fit this model to repeated point counts of the West Indian manatee, which was observed in a pilot study using aerial surveys. Our extension of N-mixture models provides increased flexibility. The effects of different sets of covariates may be estimated for the probability of occurrence of a species, for its mean abundance at occupied locations, and for its detectability.

Attributing Changing Rates of Temperature Record Breaking to Anthropogenic Influences

NASA Astrophysics Data System (ADS)

King, Andrew D.

2017-11-01

Record-breaking temperatures attract attention from the media, so understanding how and why the rate of record breaking is changing may be useful in communicating the effects of climate change. A simple methodology designed for estimating the anthropogenic influence on rates of record breaking in a given time series is proposed here. The frequency of hot and cold record-breaking temperature occurrences is shown to be changing due to the anthropogenic influence on the climate. Using ensembles of model simulations with and without human-induced forcings, it is demonstrated that the effect of climate change on global record-breaking temperatures can be detected as far back as the 1930s. On local scales, a climate change signal is detected more recently at most locations. The anthropogenic influence on the increased occurrence of hot record-breaking temperatures is clearer than it is for the decreased occurrence of cold records. The approach proposed here could be applied in rapid attribution studies of record extremes to quantify the influence of climate change on the rate of record breaking in addition to the climate anomaly being studied. This application is demonstrated for the global temperature record of 2016 and the Central England temperature record in 2014.

A simplified approach for monitoring hydrophobic organic contaminants associated with suspended sediment: Methodology and applications

USGS Publications Warehouse

Mahler, B.J.; Van Metre, P.C.

2003-01-01

Hydrophobic organic contaminants, although frequently detected in bed sediment and in aquatic biota, are rarely detected in whole-water samples, complicating determination of their occurrence, load, and source. A better approach for the investigation of hydrophobic organic contaminants is the direct analysis of sediment in suspension, but procedures for doing so are expensive and cumbersome. We describe a simple, inexpensive methodology for the dewatering of sediment and present the results of two case studies. Isolation of a sufficient mass of sediment for analyses of organochlorine compounds and PAHs is obtained by in-line filtration of large volumes of water. The sediment is removed from the filters and analyzed directly by standard laboratory methods. In the first case study, suspended-sediment sampling was used to determine occurrence, loads, and yields of contaminants in urban runoff affecting biota in Town Lake, Austin, TX. The second case study used suspended-sediment sampling to locate a point source of PCBs in the Donna Canal in south Texas, where fish are contaminated with PCBs. The case studies demonstrate that suspended-sediment sampling can be an effective tool for determining the occurrence, load, and source of hydrophobic organic contaminants in transport.

Ecology of coliphages in southern California coastal waters.

PubMed

Reyes, V C; Jiang, S C

2010-08-01

This study aims to investigate the ecology of coliphages, an important microbial pollution indicator. Specifically, our experiments address (i) the ability of environmental Escherichia coli (E. coli) to serve as hosts for coliphage replication, and (ii) the temporal and spatial distribution of coliphages in coastal waters. Water samples from three locations in California's Newport Bay watershed were tested for the presence of coliphages every 2 weeks for an entire year. A total of nine E. coli strains isolated from various sources served as hosts for coliphage detection. Coliphage occurrence was significantly different between freshwater, estuarine and coastal locations and correlated with water temperature, salinity and rainfall in the watershed. The coliphages isolated on the environmental hosts had a broad host-range relative to the coliphages isolated on an E. coli strain from sewage and a US EPA recommended strain for coliphage detection. Coliphage occurrence was related to the temperature, rainfall and salinity within the bay. The adaptation to a broad host-range may enable the proliferation of coliphages in the aquatic environment. Understanding the seasonal variation of phages is useful for establishing a background level of coliphage presence in coastal waters. The broad host-range of coliphages isolated on the environmental E. coli host calls for investigation of coliphage replication in the aquatic environment.

Color object detection using spatial-color joint probability functions.

PubMed

Luo, Jiebo; Crandall, David

2006-06-01

Object detection in unconstrained images is an important image understanding problem with many potential applications. There has been little success in creating a single algorithm that can detect arbitrary objects in unconstrained images; instead, algorithms typically must be customized for each specific object. Consequently, it typically requires a large number of exemplars (for rigid objects) or a large amount of human intuition (for nonrigid objects) to develop a robust algorithm. We present a robust algorithm designed to detect a class of compound color objects given a single model image. A compound color object is defined as having a set of multiple, particular colors arranged spatially in a particular way, including flags, logos, cartoon characters, people in uniforms, etc. Our approach is based on a particular type of spatial-color joint probability function called the color edge co-occurrence histogram. In addition, our algorithm employs perceptual color naming to handle color variation, and prescreening to limit the search scope (i.e., size and location) for the object. Experimental results demonstrated that the proposed algorithm is insensitive to object rotation, scaling, partial occlusion, and folding, outperforming a closely related algorithm based on color co-occurrence histograms by a decisive margin.

Characterization of the Virginia earthquake effects and source parameters from website traffic analysis

NASA Astrophysics Data System (ADS)

Bossu, R.; Lefebvre, S.; Mazet-Roux, G.; Roussel, F.

2012-12-01

This paper presents an after the fact study of the Virginia earthquake of 2011 August 23 using only the traffic observed on the EMSC website within minutes of its occurrence. Although the EMSC real time information services remain poorly identified in the US, a traffic surge was observed immediately after the earthquake's occurrence. Such surges, known as flashcrowd and commonly observed on our website after felt events within the Euro-Med region are caused by eyewitnesses looking for information about the shaking they have just felt. EMSC developed an approach named flashsourcing to map the felt area, and in some circumstances, the regions affected by severe damage or network disruption. The felt area is mapped simply by locating the Internet Protocol (IP) addresses of the visitors to the website during these surges while the existence of network disruption is detected by the instantaneous loss at the time of earthquake's occurrence of existing Internet sessions originating from the impacted area. For the Virginia earthquake, which was felt at large distances, the effects of the waves propagation are clearly observed. We show that the visits to our website are triggered by the P waves arrival: the first visitors from a given locality reach our website 90s after their location was shaken by the P waves. From a processing point of view, eyewitnesses can then be considered as ground motion detectors. By doing so, the epicentral location is determined through a simple dedicated location algorithm within 2 min of the earthquake's occurrence and 30 km accuracy. The magnitude can be estimated in similar time frame by using existing empirical relationships between the surface of the felt area and the magnitude. Concerning the effects of the earthquake, we check whether one can discriminate localities affected by strong shaking from web traffic analysis. This is actually the case. Localities affected by strong level of shaking exhibit higher ratio of visitors to the number of inhabitants than localities having experienced weak ground motion. In other words, we observe higher proportion of visitors from localities where the earthquake was widely felt when compared to localities where it was scarcely felt. This opens the way to automatically map the relative level of shaking within minutes of an earthquake's occurrence. In conclusion, the study of the Virginia earthquake shows that eyewitnesses' visits to our website follow the arrival of the P waves at their location. This further demonstrates the real time public desire of information after felt earthquakes, a parameter which should be integrated in the definition of earthquake information services. It also reveals additional capabilities of the flashsourcing method. Earthquakes felt at large distances i.e. where the propagation time to the most distant eyewitnesses exceeds a couple of minutes, can be located and their magnitude estimated in a time frame comparable to the one of automatic seismic locations by real time seismic networks. It also provides very rapid indication on the effects of the earthquakes, by mapping the felt area, detecting the localities affected by network disruption and mapping the relative level of shaking. Such information are essential to improve situation awareness, constrain real time scenario and in in turn, contribute to improved earthquake response.

Occurrence of antibiotic resistance genes in the fecal DNA of healthy omnivores, ovo-lacto vegetarians and vegans.

PubMed

Milanović, Vesna; Osimani, Andrea; Aquilanti, Lucia; Tavoletti, Stefano; Garofalo, Cristiana; Polverigiani, Serena; Litta-Mulondo, Alice; Cocolin, Luca; Ferrocino, Ilario; Di Cagno, Raffaella; Turroni, Silvia; Lazzi, Camilla; Pellegrini, Nicoletta; Clementi, Francesca

2017-09-01

The effects of long-term omnivore, ovo-lacto vegetarian and vegan diets on the occurrence of 12 antibiotic resistance (AR) genes in the human gut were studied. The feces of 144 healthy volunteers recruited from Turin, Bari, Bologna, and Parma were screened for the occurrence of genes conferring resistance to tetracyclines, macrolide-lincosamide-streptogramin B, vancomycin, and β-lactams. Overall, erm(B), tet(W) and tet(M) were detected at the highest frequency. A low effect from the diet on the AR gene distribution emerged, with tet(K) and vanB occurring at a lower and higher frequency in vegans and omnivores, respectively. A correlation of the intake of eggs, milk from animal sources and cheese with an increased occurrence of tet(K) was observed, together with a higher incidence of vanB in consumers of eggs, poultry meat, fish and seafood. When the detection frequencies of AR genes in volunteers from Bari and the other sites were comparatively evaluated, a north-to-south gradient was observed, whereas no effect of sex or age was highlighted. Except for tet(K), a negligible three-factor interaction was seen. A high impact of the geographical location on AR gene distribution was seen in the cohort of subjects analyzed, irrespective of their dietary habits. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Utility of contrast-enhanced computed tomography in the evaluation of canine insulinoma location.

PubMed

Buishand, Floryne O; Vilaplana Grosso, Federico R; Kirpensteijn, Jolle; van Nimwegen, Sebastiaan A

2018-06-05

To determine 1) the sensitivity of contrast-enhanced CT (CECT) for detection of primary canine insulinomas and metastases 2) the sensitivity of CECT to locate canine insulinomas within the pancreas and 3) the CECT attenuation pattern of canine insulinomas and post-contrast phase in which insulinomas have the best visibility. A retrospective review was performed of the medical records of 27 canine insulinoma patients. Simultaneous occurrence of blood glucose < 3.5 mmol/L (reference interval: 4.2-5.8 mmol/L) and plasma insulin > 10 mIU/L (reference interval: 1.4-24.5 mIU/L) were considered diagnostic for insulinoma. The dogs had a mean age of 9.0 ± 1.7 (SD) years and comprised 11 males and 17 females. Using CECT-scans, 26/27 insulinomas were successfully detected. However, CECT-scans predicted the correct location of insulinomas within the pancreas in only 14/27 dogs. In 9/13 inaccurately located insulinoma cases, the location error was major. There was no significant difference between triple, double and single-phase CECT-scans with location accuracies of 54%, 50% and 50%, respectively. Also, there was no specific post-contrast phase in which insulinomas could be visualised best. Detection of lymph node metastases with CECT-scans had a sensitivity of 67% (10/15 lymph node metastases). Detection of liver metastases had a sensitivity of 75% (6/8 liver metastases). This study highlights that major location errors mainly occurred if single- or double-phase CECT-scans were used (6/9 cases). It is suggested that triple-phase CECT-scans have superior outcome over single- or double-phase CECT-scans in pre-operative imaging of canine insulinomas.

Aliphatic hydrocarbons and triterpane biomarkers in mangrove oyster (Crassostrea belcheri) from the west coast of Peninsular Malaysia.

PubMed

Vaezzadeh, Vahab; Zakaria, Mohamad Pauzi; Bong, Chui Wei

2017-11-15

The Straits of Malacca is one of the world's busiest shipping routes where frequent oil spills occur. Rapid development in the west coast of Peninsular Malaysia is the other major source of petroleum pollution in this narrow waterway. In order to identify occurrence and origin of hydrocarbons in the Straits, mangrove oysters (Crassostrea belcheri) were collected from five sampling locations and analysed for n-alkanes and biomarkers. Soxhlet apparatus and two step column chromatography were used for extraction, purification and fractionation of the oysters. Petroleum origin n-alkanes were detected in majority of the sampling locations which is indicative of anthropogenic activities in this region. Using source and maturity diagnostic ratios for hopanes revealed used crankcase oil as the main source of petroleum hydrocarbons in oysters from all sampling locations except for the Pulau Merambong where signature of South East Asia crude oil (SEACO) was detected. Copyright © 2017 Elsevier Ltd. All rights reserved.

Automatic detection and visualisation of MEG ripple oscillations in epilepsy.

PubMed

van Klink, Nicole; van Rosmalen, Frank; Nenonen, Jukka; Burnos, Sergey; Helle, Liisa; Taulu, Samu; Furlong, Paul Lawrence; Zijlmans, Maeike; Hillebrand, Arjan

2017-01-01

High frequency oscillations (HFOs, 80-500 Hz) in invasive EEG are a biomarker for the epileptic focus. Ripples (80-250 Hz) have also been identified in non-invasive MEG, yet detection is impeded by noise, their low occurrence rates, and the workload of visual analysis. We propose a method that identifies ripples in MEG through noise reduction, beamforming and automatic detection with minimal user effort. We analysed 15 min of presurgical resting-state interictal MEG data of 25 patients with epilepsy. The MEG signal-to-noise was improved by using a cross-validation signal space separation method, and by calculating ~ 2400 beamformer-based virtual sensors in the grey matter. Ripples in these sensors were automatically detected by an algorithm optimized for MEG. A small subset of the identified ripples was visually checked. Ripple locations were compared with MEG spike dipole locations and the resection area if available. Running the automatic detection algorithm resulted in on average 905 ripples per patient, of which on average 148 ripples were visually reviewed. Reviewing took approximately 5 min per patient, and identified ripples in 16 out of 25 patients. In 14 patients the ripple locations showed good or moderate concordance with the MEG spikes. For six out of eight patients who had surgery, the ripple locations showed concordance with the resection area: 4/5 with good outcome and 2/3 with poor outcome. Automatic ripple detection in beamformer-based virtual sensors is a feasible non-invasive tool for the identification of ripples in MEG. Our method requires minimal user effort and is easily applicable in a clinical setting.

New Perspectives on Southern Ocean Frontal Variability

NASA Astrophysics Data System (ADS)

Chapman, Christopher

2017-04-01

The frontal structure of the Southern Ocean is investigated using a the Wavelet/Higher Order Statistics Enhancement (WHOSE) frontal detection method, introduced in Chapman (2014). This methodology is applied to 21 years of daily gridded sea-surface height (SSH) data to obtain daily maps of the locations of the fronts. By forming frontal occurrence frequency maps and then approximating these occurrence-maps by a superposition of simple functions, the time-mean locations of the fronts, as well as a measure of their capacity to meander, are obtained and related to the frontal locations found by previous studies. The spatial and temporal variability of the frontal structure is then considered. The number of fronts is found to be highly variable throughout the Southern Ocean, increasing (`splitting') downstream of large bathymetric features and decreasing (`merging') in regions where the fronts are tightly controlled by the underlying topography. In contrast, frontal meandering remains relatively constant. Contrary to many previous studies, little no southward migration of the fronts over the 1993-2014 time period is found, and there is only weak sensitivity to atmospheric forcing related to SAM or ENSO. Finally, the implications of splitting and merging for the flux of tracers will be discussed.

A statistical study of sporadic sodium layer observed by Sodium lidar at Hefei (31.8° N, 117.3° E)

NASA Astrophysics Data System (ADS)

Dou, X.-K.; Xue, X.-H.; Chen, T.-D.; Wan, W.-X.; Cheng, X.-W.; Li, T.; Chen, C.; Qiu, S.; Chen, Z.-Y.

2009-06-01

Sodium lidar observations of sporadic sodium layers (SSLs) during the past 3 years at a mid-latitude location (Hefei, China, 31.8° N, 117.3° E) are reported in this paper. From 64 SSL events detected in about 900 h of observation, an SSL occurrence rate of 1 event every 14 h at our location was obtained. This result, combined with previous studies, reveals that the SSL occurrence can be relatively frequent at some mid-latitude locations. Statistical analysis of main parameters for the 64 SSL events was performed. By examining the corresponding data from an ionosonde, a considerable correlation was found with a Pearson coefficient of 0.66 between seasonal variations of SSL and those of sporadic E (Es) during nighttime, which was in line with the research by Nagasawa and Abo (1995). From comparison between observations from the University of Science and Technology of China (USTC) lidar and from Wuhan Institute of Physics and Mathematics (WIPM) lidar (Wuhan, China, 31° N, 114° E), the minimum horizontal range for some events was estimated to be over 500 km.

Hierarchical spatial models of abundance and occurrence from imperfect survey data

USGS Publications Warehouse

Royle, J. Andrew; Kery, M.; Gautier, R.; Schmid, Hans

2007-01-01

Many estimation and inference problems arising from large-scale animal surveys are focused on developing an understanding of patterns in abundance or occurrence of a species based on spatially referenced count data. One fundamental challenge, then, is that it is generally not feasible to completely enumerate ('census') all individuals present in each sample unit. This observation bias may consist of several components, including spatial coverage bias (not all individuals in the Population are exposed to sampling) and detection bias (exposed individuals may go undetected). Thus, observations are biased for the state variable (abundance, occupancy) that is the object of inference. Moreover, data are often sparse for most observation locations, requiring consideration of methods for spatially aggregating or otherwise combining sparse data among sample units. The development of methods that unify spatial statistical models with models accommodating non-detection is necessary to resolve important spatial inference problems based on animal survey data. In this paper, we develop a novel hierarchical spatial model for estimation of abundance and occurrence from survey data wherein detection is imperfect. Our application is focused on spatial inference problems in the Swiss Survey of Common Breeding Birds. The observation model for the survey data is specified conditional on the unknown quadrat population size, N(s). We augment the observation model with a spatial process model for N(s), describing the spatial variation in abundance of the species. The model includes explicit sources of variation in habitat structure (forest, elevation) and latent variation in the form of a correlated spatial process. This provides a model-based framework for combining the spatially referenced samples while at the same time yielding a unified treatment of estimation problems involving both abundance and occurrence. We provide a Bayesian framework for analysis and prediction based on the integrated likelihood, and we use the model to obtain estimates of abundance and occurrence maps for the European Jay (Garrulus glandarius), a widespread, elusive, forest bird. The naive national abundance estimate ignoring imperfect detection and incomplete quadrat coverage was 77 766 territories. Accounting for imperfect detection added approximately 18 000 territories, and adjusting for coverage bias added another 131 000 territories to yield a fully corrected estimate of the national total of about 227 000 territories. This is approximately three times as high as previous estimates that assume every territory is detected in each quadrat.

Leakage detection in galvanized iron pipelines using ensemble empirical mode decomposition analysis

NASA Astrophysics Data System (ADS)

Amin, Makeen; Ghazali, M. Fairusham

2015-05-01

There are many numbers of possible approaches to detect leaks. Some leaks are simply noticeable when the liquids or water appears on the surface. However many leaks do not find their way to the surface and the existence has to be check by analysis of fluid flow in the pipeline. The first step is to determine the approximate position of leak. This can be done by isolate the sections of the mains in turn and noting which section causes a drop in the flow. Next approach is by using sensor to locate leaks. This approach are involves strain gauge pressure transducers and piezoelectric sensor. the occurrence of leaks and know its exact location in the pipeline by using specific method which are Acoustic leak detection method and transient method. The objective is to utilize the signal processing technique in order to analyse leaking in the pipeline. With this, an EEMD method will be applied as the analysis method to collect and analyse the data.

Fine-Scale Event Location and Error Analysis in NET-VISA

NASA Astrophysics Data System (ADS)

Arora, N. S.; Russell, S.

2016-12-01

NET-VISA is a generative probabilistic model for the occurrence of seismic, hydro, and atmospheric events, and the propagation of energy from these events through various mediums and phases before being detected, or misdetected, by IMS stations. It is built on top of the basic station, and arrival detection processing at the IDC, and is currently being tested in the IDC network processing pipelines. A key distinguishing feature of NET-VISA is that it is easy to incorporate prior scientific knowledge and historical data into the probabilistic model. The model accounts for both detections and mis-detections when forming events, and this allows it to make more accurate event hypothesis. It has been continuously evaluated since 2012, and in each year it makes a roughly 60% reduction in the number of missed events without increasing the false event rate as compared to the existing GA algorithm. More importantly the model finds large numbers of events that have been confirmed by regional seismic bulletins but missed by the IDC analysts using the same data. In this work we focus on enhancements to the model to improve the location accuracy, and error ellipses. We will present a new version of the model that focuses on the fine scale around the event location, and present error ellipses and analysis of recent important events.

Experimentally Shocked and Altered Basalt: VNIR Spectra of Mars Analog Materials

NASA Technical Reports Server (NTRS)

Bell, M. S.

2017-01-01

Major occurrences of hydrous alteration minerals on Mars have been found in Noachian impact craters formed in basaltic targets and detected using visible/near infrared (VNIR) spectroscopy. Until recently phyllosilicates were detected only in craters in the southern hemisphere. However, it has been reported that at least nine craters in the northern plains apparently excavated thick layers of lava and sediment to expose phyllosilicates as well and two Hesperian-aged impact craters, Toro and Majuro, bear evidence of phyllosilicates in the southern highlands. Turner et al. 2015 reported that hydrated minerals were identified in three Amazonian aged complex impact craters, located at 52.42degN, 39.86degE in the Ismenius Lacus quadrangle, at 8.93degN, 141.28degE in Elysium, and within Stokes crater. These discoveries indicate that Mars was globally altered by water throughout its past but do not fully constrain formation conditions for phyllosilicate occurrences which have important implications for the evolution of the surface and biological potential of Mars.

First report of Porcine teschovirus (PTV), Porcine sapelovirus (PSV) and Enterovirus G (EV-G) in pig herds of Brazil.

PubMed

Donin, Daiane Güllich; de Arruda Leme, Raquel; Alfieri, Alice Fernandes; Alberton, Geraldo Camilo; Alfieri, Amauri Alcindo

2014-03-01

Porcine teschovirus (PTV), Porcine sapelovirus (PSV) and Enterovirus G (EV-G) have been associated with enteric, respiratory, reproductive and neurological disorders. Although Brazil is the world's fourth largest producer and exporter of pork, no information on the occurrence of PTV, PSV and EV-G infections is available for Brazilian pig herds. This study aimed to investigate the occurrence of Porcine enteric picornavirus infections in pig farms located in three distinct geographical regions of Brazil. Forty randomly selected diarrhoeic and normal consistency faeces of suckling (n = 22) and nursery (n = 18) pigs from farms located in 21 distinct cities of the Southern, Southeast, and Midwest regions of Brazil were evaluated by nested-RT-PCR assays. Suckling piglets presented the expected amplicon size for PTV (158 bp) and EV-G (313 bp) in single and mixed infections in 40.9 % (9/22) of the faecal samples. PSV amplicon (212 bp) was not detected in this age group. For nursery pigs, Porcine enteric picornaviruses amplicons were present in 77.8 % (14/18) of the faecal samples. PTV and EV-G were detected in single and mixed infections, while PSV was detected only in two samples in co-infection with PTV and EV-G in this age group. The Brazilian regions evaluated presented at least two of the tested viruses. Sequencing analysis revealed high similarities to the related viruses (95.3 to 99.2 % for PTV, 94.2 to 98.5 % for PSV and 86 to 100 % for EV-G). For the first time PTV, PSV and EV-G have been molecularly detected and characterised in pig faecal samples in Brazil.

Occurrence and persistence of fungicides in bed sediments and suspended solids from three targeted use areas in the United States

USGS Publications Warehouse

Smalling, Kelly L.; Reilly, Timothy J.; Sandstrom, Mark W.; Kuivila, Kathryn

2013-01-01

To document the environmental occurrence and persistence of fungicides, a robust and sensitive analytical method was used to measure 34 fungicides and an additional 57 current-use pesticides in bed sediments and suspended solids collected from areas of intense fungicide use within three geographic areas across the United States. Sampling sites were selected near or within agricultural research farms using prophylactic fungicides at rates and types typical of their geographic location. At least two fungicides were detected in 55% of the bed and 83% of the suspended solid samples and were detected in conjunction with herbicides and insecticides. Six fungicides were detected in all samples including pyraclostrobin (75%), boscalid (53%), chlorothalonil (41%) and zoxamide (22%). Pyraclostrobin, a strobilurin fungicide, used frequently in the United States on a variety of crops, was detected more frequently than p,p′-DDE, the primary degradate of p,p′-DDT, which is typically one of the most frequently occurring pesticides in sediments collected within highly agricultural areas. Maximum fungicide concentrations in bed sediments and suspended solids were 198 and 56.7 μg/kg dry weight, respectively. There is limited information on the occurrence, fate, and persistence of many fungicides in sediment and the environmental impacts are largely unknown. The results of this study indicate the importance of documenting the persistence of fungicides in the environment and the need for a better understanding of off-site transport mechanisms, particularly in areas where crops are grown that require frequent treatments to prevent fungal diseases.

Occurrence and behavior of selected pharmaceuticals during riverbank filtration in The Republic of Serbia.

PubMed

Kovačević, Srđan; Radišić, Marina; Laušević, Mila; Dimkić, Milan

2017-01-01

The objectives of the research are to determine the occurrence of pharmaceuticals in surface water and groundwater in the Republic of Serbia and to identify significant effects of river-water purification through riverbank filtration, concerning oxic conditions and hydrogeological conditions of alluvial aquifers in Serbia. Between 2009 and 2015, a total of 19 studied pharmaceuticals and metabolites were analyzed in 184 samples, 10 were detected in surface water, and 8 in groundwater. Carbamazepine and metamizole metabolites N-acetyl-4-amino-antipyrine (4-AAA) and N-formyl-4-amino-antipyrine (4-FAA) have the highest frequency of occurrence in surface water (57.3-68.8 %) and in groundwater (19.5-43.9 %), respectively. Highest detected concentrations were for 4-AAA (520 ng/L) and 4-FAA (248 ng/L) in surface water as well as in groundwater (4-AAA 128 ng/L and 4-FAA 150 ng/L). Results showed that riverbank filtration sites with different hydrogeological and oxic conditions could significantly remove investigated pharmaceuticals. Percentage of removal during riverbank filtration was determined for carbamazepine (65.4 %), trimethoprim (100 %), 4-AAA (91.2 %), and 4-FAA (70 %) for all investigated locations. Based on the available data for three specific locations (Danube River alluvion, Sava River alluvion, and Velika Morava River alluvion), results showed that besides oxic conditions, residence time of groundwater in alluvial aquifer and ratio of infiltrated water from river to the well play very important role in the quality of groundwater. These results are extremely important for better understanding of self-purification potential of alluvial aquifers and protection from potential impacts of anthropogenic pollution to the groundwater sources in the Republic of Serbia.

Occurrence of pharmaceuticals and personal care products in effluent-dominated Saudi Arabian coastal waters of the Red Sea.

PubMed

Ali, Aasim M; Rønning, Helene Thorsen; Alarif, Walied; Kallenborn, Roland; Al-Lihaibi, Sultan S

2017-05-01

The occurrence of selected pharmaceuticals and personal care products (PPCPs) and the pesticide atrazine were investigated in seawater samples collected from stations located at effluent dominated sites in the Saudi Arabian coastal waters of the Red Sea. PPCPs were analysed using solid phase extraction (SPE) followed by high performance liquid chromatography - tandem mass spectrometry (HPLC-MS/MS). A multi component method for the ultra-trace level quantification of 13 target PPCPs in Seawater was developed and validated for the here performed study. The method procedure is described in detail in the supplementary material section. 26 samples from 7 distinct locations (2 directly influenced by continuous sewage release) were chosen for the sampling of surface seawater. Based upon local sales information, 25 target substances (20 PPCPs, 4 pesticides and 1 stimulant) were chosen for the here reported method development. Thirteen PPCPs were detected and quantified in a total of 26 seawater samples. Metformin, diclofenac, acetaminophen, and caffeine were identified as the most abundant PPCPs, detected in maximum concentration higher than 3 μg/L (upper quantification limit for the here developed method). Concentrations were in the range of 7- >3000 (metformin), 3000 ng/L (caffeine). The contribution of direct sewage release on the PPCP levels detected was obvious, the target PPCPs were detected in the Al-Arbaeen and Al-Shabab coastal lagoons in high concentrations due to the low water exchange with the open sea and still ongoing sewage releases in the lagoons. Also, substantial amounts of antibiotics were detected in all samples. Levels and distribution profile of the detected PPCPs revealed high level release rates and give raise to concern on potential environmental risks associated with the here document long term exposure on the fragile coastal marine environment of the region but particularly in the nearby protected coral reef environment outside the harbour region of Jeddah. Copyright © 2017 Elsevier Ltd. All rights reserved.

Occurrence of putative virulence genes on Arcobacter butzleri isolated from three different environmental sites throughout the dairy chain.

PubMed

Piva, S; Gariano, G R; Bonilauri, P; Giacometti, F; Decastelli, L; Florio, D; Massella, E; Serraino, A

2017-04-01

This comparative study investigated the occurrence of cadF, cj1349, ciaB, pldA, tlyA, hecA, hecB, mviN, irgA and IroE genes in 212 Arcobacter butzleri isolated from three different environmental sites linked to the dairy chain (farms, industrial and artisanal dairy plants) located in three Italian regions (Lombardy, Emilia-Romagna and Calabria). According to the presence of these genes, different pathotypes (P-types) were determined. The main genes detected were ciaB, mviN, tlyA, cj1349, pldA and cadF, while the least common genes were iroE, hecA, hecB and irgA. TlyA, irgA, hecA, hecB and iroE, which were significantly more frequent in isolates recovered in industrial dairy plants. Twelve P-types were detected. The occurrence of the most frequently detected P-types (P-types 1, 2, 3 and 5) differed significantly (P < 0·001) in relation to both the environmental site and geographical area of isolation. The highest diversity in P-types was observed in industrial dairy plants and in the Calabria region. The results of this study show a correlation between the occurrence of putative virulence genes and virulence genotype variability depending on the environmental site and geographical origin of the isolates. The present study provides insights into the similar distribution of putative virulence genes in a dairy chain and other sources' isolates and also into a geographical distribution of some P-types. We have shown that industrial dairy plants may represent an environmental site favouring a selection of the isolates with a higher pathogenetic pattern. © 2017 The Society for Applied Microbiology.

Modelling the effects of environmental conditions on the acoustic occurrence and behaviour of Antarctic blue whales

PubMed Central

Shabangu, Fannie W.; Yemane, Dawit; Stafford, Kathleen M.; Ensor, Paul; Findlay, Ken P.

2017-01-01

Harvested to perilously low numbers by commercial whaling during the past century, the large scale response of Antarctic blue whales Balaenoptera musculus intermedia to environmental variability is poorly understood. This study uses acoustic data collected from 586 sonobuoys deployed in the austral summers of 1997 through 2009, south of 38°S, coupled with visual observations of blue whales during the IWC SOWER line-transect surveys. The characteristic Z-call and D-call of Antarctic blue whales were detected using an automated detection template and visual verification method. Using a random forest model, we showed the environmental preferences pattern, spatial occurrence and acoustic behaviour of Antarctic blue whales. Distance to the southern boundary of the Antarctic Circumpolar Current (SBACC), latitude and distance from the nearest Antarctic shores were the main geographic predictors of blue whale call occurrence. Satellite-derived sea surface height, sea surface temperature, and productivity (chlorophyll-a) were the most important environmental predictors of blue whale call occurrence. Call rates of D-calls were strongly predicted by the location of the SBACC, latitude and visually detected number of whales in an area while call rates of Z-call were predicted by the SBACC, latitude and longitude. Satellite-derived sea surface height, wind stress, wind direction, water depth, sea surface temperatures, chlorophyll-a and wind speed were important environmental predictors of blue whale call rates in the Southern Ocean. Blue whale call occurrence and call rates varied significantly in response to inter-annual and long term variability of those environmental predictors. Our results identify the response of Antarctic blue whales to inter-annual variability in environmental conditions and highlighted potential suitable habitats for this population. Such emerging knowledge about the acoustic behaviour, environmental and habitat preferences of Antarctic blue whales is important in improving the management and conservation of this highly depleted species. PMID:28222124

Modelling the effects of environmental conditions on the acoustic occurrence and behaviour of Antarctic blue whales.

PubMed

Shabangu, Fannie W; Yemane, Dawit; Stafford, Kathleen M; Ensor, Paul; Findlay, Ken P

2017-01-01

Harvested to perilously low numbers by commercial whaling during the past century, the large scale response of Antarctic blue whales Balaenoptera musculus intermedia to environmental variability is poorly understood. This study uses acoustic data collected from 586 sonobuoys deployed in the austral summers of 1997 through 2009, south of 38°S, coupled with visual observations of blue whales during the IWC SOWER line-transect surveys. The characteristic Z-call and D-call of Antarctic blue whales were detected using an automated detection template and visual verification method. Using a random forest model, we showed the environmental preferences pattern, spatial occurrence and acoustic behaviour of Antarctic blue whales. Distance to the southern boundary of the Antarctic Circumpolar Current (SBACC), latitude and distance from the nearest Antarctic shores were the main geographic predictors of blue whale call occurrence. Satellite-derived sea surface height, sea surface temperature, and productivity (chlorophyll-a) were the most important environmental predictors of blue whale call occurrence. Call rates of D-calls were strongly predicted by the location of the SBACC, latitude and visually detected number of whales in an area while call rates of Z-call were predicted by the SBACC, latitude and longitude. Satellite-derived sea surface height, wind stress, wind direction, water depth, sea surface temperatures, chlorophyll-a and wind speed were important environmental predictors of blue whale call rates in the Southern Ocean. Blue whale call occurrence and call rates varied significantly in response to inter-annual and long term variability of those environmental predictors. Our results identify the response of Antarctic blue whales to inter-annual variability in environmental conditions and highlighted potential suitable habitats for this population. Such emerging knowledge about the acoustic behaviour, environmental and habitat preferences of Antarctic blue whales is important in improving the management and conservation of this highly depleted species.

Workflow and intervention times of MR-guided focused ultrasound - Predicting the impact of new techniques.

PubMed

Loeve, Arjo J; Al-Issawi, Jumana; Fernandez-Gutiérrez, Fabiola; Langø, Thomas; Strehlow, Jan; Haase, Sabrina; Matzko, Matthias; Napoli, Alessandro; Melzer, Andreas; Dankelman, Jenny

2016-04-01

Magnetic resonance guided focused ultrasound surgery (MRgFUS) has become an attractive, non-invasive treatment for benign and malignant tumours, and offers specific benefits for poorly accessible locations in the liver. However, the presence of the ribcage and the occurrence of liver motion due to respiration limit the applicability MRgFUS. Several techniques are being developed to address these issues or to decrease treatment times in other ways. However, the potential benefit of such improvements has not been quantified. In this research, the detailed workflow of current MRgFUS procedures was determined qualitatively and quantitatively by using observation studies on uterine MRgFUS interventions, and the bottlenecks in MRgFUS were identified. A validated simulation model based on discrete events simulation was developed to quantitatively predict the effect of new technological developments on the intervention duration of MRgFUS on the liver. During the observation studies, the duration and occurrence frequencies of all actions and decisions in the MRgFUS workflow were registered, as were the occurrence frequencies of motion detections and intervention halts. The observation results show that current MRgFUS uterine interventions take on average 213min. Organ motion was detected on average 2.9 times per intervention, of which on average 1.0 actually caused a need for rework. Nevertheless, these motion occurrences and the actions required to continue after their detection consumed on average 11% and up to 29% of the total intervention duration. The simulation results suggest that, depending on the motion occurrence frequency, the addition of new technology to automate currently manual MRgFUS tasks and motion compensation could potentially reduce the intervention durations by 98.4% (from 256h 5min to 4h 4min) in the case of 90% motion occurrence, and with 24% (from 5h 19min to 4h 2min) in the case of no motion. In conclusion, new tools were developed to predict how intervention durations will be affected by future workflow changes and by the introduction of new technology. Copyright © 2016 Elsevier Inc. All rights reserved.

Spatial and Temporal Variations in the Occurrence and Foraging Activity of Coastal Dolphins in Menai Bay, Zanzibar, Tanzania.

PubMed

Temple, Andrew J; Tregenza, Nick; Amir, Omar A; Jiddawi, Narriman; Berggren, Per

2016-01-01

Understanding temporal patterns in distribution, occurrence and behaviour is vital for the effective conservation of cetaceans. This study used cetacean click detectors (C-PODs) to investigate spatial and temporal variation in occurrence and foraging activity of the Indo-Pacific bottlenose (Tursiops aduncus) and Indian Ocean humpback (Sousa plumbea) dolphins resident in the Menai Bay Conservation Area (MBCA), Zanzibar, Tanzania. Occurrence was measured using detection positive minutes. Inter-click intervals were used to identify terminal buzz vocalisations, allowing for analysis of foraging activity. Data were analysed in relation to spatial (location) and temporal (monsoon season, diel phase and tidal phase) variables. Results showed significantly increased occurrence and foraging activity of dolphins in southern areas and during hours of darkness. Higher occurrence at night was not explained by diel variation in echolocation rate and so were considered representative of occurrence patterns. Both tidal phase and monsoon season influenced occurrence but results varied among sites, with no general patterns found. Foraging activity was greatest during hours of darkness, High water and Flood tidal phases. Comparisons of echolocation data among sites suggested differences in the broadband click spectra of MBCA dolphins, possibly indicative of species differences. These dolphin populations are threatened by unsustainable fisheries bycatch and tourism activities. The spatial and temporal patterns identified in this study have implications for future conservation and management actions with regards to these two threats. Further, the results indicate future potential for using passive acoustics to identify and monitor the occurrence of these two species in areas where they co-exist.

Software error detection

NASA Technical Reports Server (NTRS)

Buechler, W.; Tucker, A. G.

1981-01-01

Several methods were employed to detect both the occurrence and source of errors in the operational software of the AN/SLQ-32. A large embedded real time electronic warfare command and control system for the ROLM 1606 computer are presented. The ROLM computer provides information about invalid addressing, improper use of privileged instructions, stack overflows, and unimplemented instructions. Additionally, software techniques were developed to detect invalid jumps, indices out of range, infinte loops, stack underflows, and field size errors. Finally, data are saved to provide information about the status of the system when an error is detected. This information includes I/O buffers, interrupt counts, stack contents, and recently passed locations. The various errors detected, techniques to assist in debugging problems, and segment simulation on a nontarget computer are discussed. These error detection techniques were a major factor in the success of finding the primary cause of error in 98% of over 500 system dumps.

Automatic Detection of Beaked Whales from Acoustic Seagliders

DTIC Science & Technology

2012-09-30

Seagliders in the northwest corner of the AUTEC range and operated them continuously for 5 days. One glider was programmed to hold its position on top...red star) of a beaked whale, likely a Cuvier’s beaked whale, close to the location of a tagged beaked whale (black dot). 7 c) Dolphins and sperm ...Soc. Am. 129(6):3610-3622. Mellinger, D.K., K.M. Stafford, and C.G. Fox. 2004. Seasonal occurrence of sperm whale (Physeter macrocephalus) sounds

The occurrence of glyphosate, atrazine, and other pesticides in vernal pools and adjacent streams in Washington, DC, Maryland, Iowa, and Wyoming, 2005-2006

USGS Publications Warehouse

Battaglin, William A.; Rice, Karen C.; Focazio, Michael J.; Salmons, Sue; Barry, Robert X.

2009-01-01

Vernal pools are sensitive environments that provide critical habitat for many species, including amphibians. These small water bodies are not always protected by pesticide label requirements for no-spray buffer zones, and the occurrence of pesticides in them is poorly documented. In this study, we investigated the occurrence of glyphosate, its primary degradation product aminomethylphosphonic acid, and additional pesticides in vernal pools and adjacent flowing waters. Most sampling sites were chosen to be in areas where glyphosate was being used either in production agriculture or for nonindigenous plant control. The four site locations were in otherwise protected areas (e.g., in a National Park). When possible, water samples were collected both before and after glyphosate application in 2005 and 2006. Twenty-eight pesticides or pesticide degradation products were detected in the study, and as many as 11 were identified in individual samples. Atrazine was detected most frequently and concentrations exceeded the freshwater aquatic life standard of 1.8 micrograms per liter (μg/l) in samples from Rands Ditch and Browns Ditch in DeSoto National Wildlife Refuge. Glyphosate was measured at the highest concentration (328 μg/l) in a sample from Riley Spring Pond in Rock Creek National Park. This concentration exceeded the freshwater aquatic life standard for glyphosate of 65 μg/l. Aminomethylphosphonic acid, triclopyr, and nicosulfuron also were detected at concentrations greater than 3.0 μg/l.

Response of African Elephants (Loxodonta africana) to Seasonal Changes in Rainfall

PubMed Central

Garstang, Michael; Davis, Robert E.; Leggett, Keith; Frauenfeld, Oliver W.; Greco, Steven; Zipser, Edward; Peterson, Michael

2014-01-01

The factors that trigger sudden, seasonal movements of elephants are uncertain. We hypothesized that savannah elephant movements at the end of the dry season may be a response to their detection of distant thunderstorms. Nine elephants carrying Global Positioning System (GPS) receivers were tracked over seven years in the extremely dry and rugged region of northwestern Namibia. The transition date from dry to wet season conditions was determined annually from surface- and satellite-derived rainfall. The distance, location, and timing of rain events relative to the elephants were determined using the Tropical Rainfall Measurement Mission (TRMM) satellite precipitation observations. Behavioral Change Point Analysis (BCPA) was applied to four of these seven years demonstrating a response in movement of these elephants to intra- and inter-seasonal occurrences of rainfall. Statistically significant changes in movement were found prior to or near the time of onset of the wet season and before the occurrence of wet episodes within the dry season, although the characteristics of the movement changes are not consistent between elephants and years. Elephants in overlapping ranges, but following separate tracks, exhibited statistically valid non-random near-simultaneous changes in movements when rainfall was occurring more than 100 km from their location. While the environmental trigger that causes these excursions remains uncertain, rain-system generated infrasound, which can travel such distances and be detected by elephants, is a possible trigger for such changes in movement. PMID:25299514

Response of African elephants (Loxodonta africana) to seasonal changes in rainfall.

PubMed

Garstang, Michael; Davis, Robert E; Leggett, Keith; Frauenfeld, Oliver W; Greco, Steven; Zipser, Edward; Peterson, Michael

2014-01-01

The factors that trigger sudden, seasonal movements of elephants are uncertain. We hypothesized that savannah elephant movements at the end of the dry season may be a response to their detection of distant thunderstorms. Nine elephants carrying Global Positioning System (GPS) receivers were tracked over seven years in the extremely dry and rugged region of northwestern Namibia. The transition date from dry to wet season conditions was determined annually from surface- and satellite-derived rainfall. The distance, location, and timing of rain events relative to the elephants were determined using the Tropical Rainfall Measurement Mission (TRMM) satellite precipitation observations. Behavioral Change Point Analysis (BCPA) was applied to four of these seven years demonstrating a response in movement of these elephants to intra- and inter-seasonal occurrences of rainfall. Statistically significant changes in movement were found prior to or near the time of onset of the wet season and before the occurrence of wet episodes within the dry season, although the characteristics of the movement changes are not consistent between elephants and years. Elephants in overlapping ranges, but following separate tracks, exhibited statistically valid non-random near-simultaneous changes in movements when rainfall was occurring more than 100 km from their location. While the environmental trigger that causes these excursions remains uncertain, rain-system generated infrasound, which can travel such distances and be detected by elephants, is a possible trigger for such changes in movement.

The role of iconic memory in change-detection tasks.

PubMed

Becker, M W; Pashler, H; Anstis, S M

2000-01-01

In three experiments, subjects attempted to detect the change of a single item in a visually presented array of items. Subjects' ability to detect a change was greatly reduced if a blank interstimulus interval (ISI) was inserted between the original array and an array in which one item had changed ('change blindness'). However, change detection improved when the location of the change was cued during the blank ISI. This suggests that people represent more information of a scene than change blindness might suggest. We test two possible hypotheses why, in the absence of a cue, this representation fails to produce good change detection. The first claims that the intervening events employed to create change blindness result in multiple neural transients which co-occur with the to-be-detected change. Poor detection rates occur because a serial search of all the transient locations is required to detect the change, during which time the representation of the original scene fades. The second claims that the occurrence of the second frame overwrites the representation of the first frame, unless that information is insulated against overwriting by attention. The results support the second hypothesis. We conclude that people may have a fairly rich visual representation of a scene while the scene is present, but fail to detect changes because they lack the ability to simultaneously represent two complete visual representations.

Reconciling Ground-Based and Space-Based Estimates of the Frequency of Occurrence and Radiative Effect of Clouds around Darwin, Australia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Protat, Alain; Young, Stuart; McFarlane, Sally A.

2014-02-01

The objective of this paper is to investigate whether estimates of the cloud frequency of occurrence and associated cloud radiative forcing as derived from ground-based and satellite active remote sensing and radiative transfer calculations can be reconciled over a well instrumented active remote sensing site located in Darwin, Australia, despite the very different viewing geometry and instrument characteristics. It is found that the ground-based radar-lidar combination at Darwin does not detect most of the cirrus clouds above 10 km (due to limited lidar detection capability and signal obscuration by low-level clouds) and that the CloudSat radar - Cloud-Aerosol Lidar withmore » Orthogonal Polarization (CALIOP) combination underreports the hydrometeor frequency of occurrence below 2 km height, due to instrument limitations at these heights. The radiative impact associated with these differences in cloud frequency of occurrence is large on the surface downwelling shortwave fluxes (ground and satellite) and the top-of atmosphere upwelling shortwave and longwave fluxes (ground). Good agreement is found for other radiative fluxes. Large differences in radiative heating rate as derived from ground and satellite radar-lidar instruments and RT calculations are also found above 10 km (up to 0.35 Kday-1 for the shortwave and 0.8 Kday-1 for the longwave). Given that the ground-based and satellite estimates of cloud frequency of occurrence and radiative impact cannot be fully reconciled over Darwin, caution should be exercised when evaluating the representation of clouds and cloud-radiation interactions in large-scale models and limitations of each set of instrumentation should be considered when interpreting model-observations differences.« less

Seasonal and spatial variations of PPCP occurrence, removal and mass loading in three wastewater treatment plants located in different urbanization areas in Xiamen, China.

PubMed

Sun, Qian; Li, Mingyue; Ma, Cong; Chen, Xiangqiang; Xie, Xiaoqing; Yu, Chang-Ping

2016-01-01

The occurrence and fate of 48 pharmaceuticals and personal care products (PPCPs) in three wastewater treatment plants (WWTPs) located in different urbanization areas in Xiamen, China was investigated over one year. Results showed that PPCPs were widely detected, but the major PPCPs in the influent, effluent, and sludge were different. Spatial and seasonal variations of PPCP levels in the influent and sludge were observed. The removal efficiencies for most PPCPs were similar among the three WWTPs, although they employed different biological treatment processes. Furthermore, the mass loadings per inhabitant of most pharmaceuticals had a positive correlation with the urbanization levels, indicating that most pharmaceutical usage was higher in the urban core compared to the suburban zones. The total mass loadings of all the 48 PPCPs in the effluent and waste sludge showed close proportions, which suggested the importance of proper waste sludge disposal to prevent a large quantity of PPCPs from entering the environment. Copyright © 2015 Elsevier Ltd. All rights reserved.

Linking Satellite Derived Land Surface Temperature with Cholera: A Case Study for South Sudan

NASA Astrophysics Data System (ADS)

Aldaach, H. S. V.; Jutla, A.; Akanda, A. S.; Colwell, R. R.

2014-12-01

A sudden onset of cholera in South Sudan, in April 2014 in Northern Bari in Juba town resulted in more than 400 cholera cases after four weeks of initial outbreak with a case of fatality rate of CFR 5.4%. The total number of reported cholera cases for the period of April to July, 2014 were 5,141 including 114 deaths. With the limited efficacy of cholera vaccines, it is necessary to develop mechanisms to predict cholera occurrence and thereafter devise intervention strategies for mitigating impacts of the disease. Hydroclimatic processes, primarily precipitation and air temperature are related to epidemic and episodic outbreak of cholera. However, due to coarse resolution of both datasets, it is not possible to precisely locate the geographical location of disease. Here, using Land Surface Temperature (LST) from MODIS sensors, we have developed an algorithm to identify regions susceptible for cholera. Conditions for occurrence of cholera were detectable at least one month in advance in South Sudan and were statistically sensitive to hydroclimatic anomalies of land surface and air temperature, and precipitation. Our results indicate significant spatial and temporal averaging required to infer usable information from LST over South Sudan. Preliminary results that geographically location of cholera outbreak was identifiable within 1km resolution of the LST data.

Impact of Season, Demographic and Environmental Factors on Salmonella Occurrence in Raccoons (Procyon lotor) from Swine Farms and Conservation Areas in Southern Ontario

PubMed Central

Pearl, David L.; Janecko, Nicol; Boerlin, Patrick; Reid-Smith, Richard J.; Parmley, Jane; Jardine, Claire M.

2016-01-01

Salmonella has been detected in the feces of many wildlife species, including raccoons (Procyon lotor), but little is known about the epidemiology of Salmonella in wildlife living in different habitat types. Our objective was to investigate demographic, temporal, and climatic factors associated with the carriage of Salmonella in raccoons and their environment on swine farms and conservation areas. Using a repeated cross-sectional study design, we collected fecal samples from raccoons and environmental samples (soil, manure pits, dumpsters) on 5 swine farms and 5 conservation areas in Ontario, Canada once every five weeks from May to November, 2011–2013. Salmonella was detected in 26% (279/1093; 95% CI 22.9–28.2) of raccoon fecal samples, 6% (88/1609; 95% CI 4.5–6.8) of soil samples, 30% (21/69; 95% CI 20.0–42.7) of manure pit samples, and 23% (7/31; 95% CI 9.6–41.0) of dumpster samples. Of samples testing positive for Salmonella, antimicrobial resistance was detected in 5% (14/279; 95% CI 2.8–8.3) of raccoon fecal, 8% (7/89; 95% CI 3.2–15.5) of soil, 10% (2/21; 95% CI 1.2–30.4) of manure pit, and 0/7 dumpster samples. Using multi-level multivariable logistic regression analyses, we found location type (swine farm or conservation area) was not a significant explanatory variable for Salmonella occurrence in raccoon feces or soil (p > 0.05). However, detection of Salmonella in raccoon feces was associated with rainfall, season, and sex with various interaction effects among these variables. We detected a variety of Salmonella serovars that infect humans and livestock in the feces of raccoons indicating that raccoons living near humans, regardless of location type, may play a role in the epidemiology of salmonellosis in livestock and humans in southwestern Ontario. PMID:27611198

Impact of Season, Demographic and Environmental Factors on Salmonella Occurrence in Raccoons (Procyon lotor) from Swine Farms and Conservation Areas in Southern Ontario.

PubMed

Bondo, Kristin J; Pearl, David L; Janecko, Nicol; Boerlin, Patrick; Reid-Smith, Richard J; Parmley, Jane; Jardine, Claire M

2016-01-01

Salmonella has been detected in the feces of many wildlife species, including raccoons (Procyon lotor), but little is known about the epidemiology of Salmonella in wildlife living in different habitat types. Our objective was to investigate demographic, temporal, and climatic factors associated with the carriage of Salmonella in raccoons and their environment on swine farms and conservation areas. Using a repeated cross-sectional study design, we collected fecal samples from raccoons and environmental samples (soil, manure pits, dumpsters) on 5 swine farms and 5 conservation areas in Ontario, Canada once every five weeks from May to November, 2011-2013. Salmonella was detected in 26% (279/1093; 95% CI 22.9-28.2) of raccoon fecal samples, 6% (88/1609; 95% CI 4.5-6.8) of soil samples, 30% (21/69; 95% CI 20.0-42.7) of manure pit samples, and 23% (7/31; 95% CI 9.6-41.0) of dumpster samples. Of samples testing positive for Salmonella, antimicrobial resistance was detected in 5% (14/279; 95% CI 2.8-8.3) of raccoon fecal, 8% (7/89; 95% CI 3.2-15.5) of soil, 10% (2/21; 95% CI 1.2-30.4) of manure pit, and 0/7 dumpster samples. Using multi-level multivariable logistic regression analyses, we found location type (swine farm or conservation area) was not a significant explanatory variable for Salmonella occurrence in raccoon feces or soil (p > 0.05). However, detection of Salmonella in raccoon feces was associated with rainfall, season, and sex with various interaction effects among these variables. We detected a variety of Salmonella serovars that infect humans and livestock in the feces of raccoons indicating that raccoons living near humans, regardless of location type, may play a role in the epidemiology of salmonellosis in livestock and humans in southwestern Ontario.

Effectiveness of scat-detection dogs in determining species presence in a tropical savanna landscape.

PubMed

Vynne, Carly; Skalski, John R; Machado, Ricardo B; Groom, Martha J; Jácomo, Anah T A; Marinho-Filho, Jader; Ramos Neto, Mario B; Pomilla, Cristina; Silveira, Leandro; Smith, Heath; Wasser, Samuel K

2011-02-01

Most protected areas are too small to sustain populations of wide-ranging mammals; thus, identification and conservation of high-quality habitat for those animals outside parks is often a high priority, particularly for regions where extensive land conversion is occurring. This is the case in the vicinity of Emas National Park, a small protected area in the Brazilian Cerrado. Over the last 40 years the native vegetation surrounding the park has been converted to agriculture, but the region still supports virtually all of the animals native to the area. We determined the effectiveness of scat-detection dogs in detecting presence of five species of mammals threatened with extinction by habitat loss: maned wolf (Chrysocyon brachyurus), puma (Puma concolor), jaguar (Panthera onca), giant anteater (Myrmecophaga tridactyla), and giant armadillo (Priodontes maximus). The probability of scat detection varied among the five species and among survey quadrats of different size, but was consistent across team, season, and year. The probability of occurrence, determined from the presence of scat, in a randomly selected site within the study area ranged from 0.14 for jaguars, which occur primarily in the forested areas of the park, to 0.91 for maned wolves, the most widely distributed species in our study area. Most occurrences of giant armadillos in the park were in open grasslands, but in the agricultural matrix they tended to occur in riparian woodlands. At least one target species occurred in every survey quadrat, and giant armadillos, jaguars, and maned wolves were more likely to be present in quadrats located inside than outside the park. The effort required for detection of scats was highest for the two felids. We were able to detect the presence for each of five wide-ranging species inside and outside the park and to assign occurrence probabilities to specific survey sites. Thus, scat dogs provide an effective survey tool for rare species even when accurate detection likelihoods are required. We believe the way we used scat-detection dogs to determine the presence of species can be applied to the detection of other mammalian species in other ecosystems. ©2010 Society for Conservation Biology.

Prevalence, diversity and co-occurrence of the white spot syndrome virus, monodon baculovirus and Penaeus stylirostris densovirus in wild populations of Penaeus monodon in the Philippines.

PubMed

Orosco, Fredmoore L; Lluisma, Arturo O

2017-08-09

The farming of the black tiger shrimp Penaeus monodon in the Philippines relies on wild broodstock. PCR was thus used to determine the prevalence of white spot syndrome virus (WSSV), monodon baculovirus (MBV) and Penaeus stylirostris densovirus (PstDV) in a total of 178 shrimp from 6 geographically disparate locations where broodstock are captured for use in hatcheries. PCR amplicons were also sequenced to identify phylogenetic relationships of the virus haplotypes detected. Shrimp from southeastern Luzon (Camarines Norte) had the highest prevalence of each of the 3 viruses and were frequently co-infected with 2 or more viruses. No viruses were detected in shrimp from northwestern Luzon (Pangasinan). MBV was most prevalent and PstDV strains displayed the most genetic diversity. WSSV was detected at 3 sites, and a VP28 gene sequence examined was invariant and consistent with strains found in many countries, including Thailand, China, Japan, Korea, Indonesia, Iran, Brazil and Mexico. WSSV open reading frame 94 gene sequence analysis identified location-specific repeat types. MBV sequences were dissimilar to haplotypes detected in India. PstDV sequences were diverse and included 2 lineages detected either in Australia or in the United States, Ecuador, Taiwan, China and Vietnam. The PCR data confirmed that WSSV, MBV and PstDV are endemic in P. monodon in the Philippines but that populations at some locations might remain free of infection.

Molecular survey of occurrence and quantity of Legionella spp., Mycobacterium spp., Pseudomonas aeruginosa and amoeba hosts in municipal drinking water storage tank sediments.

PubMed

Lu, J; Struewing, I; Yelton, S; Ashbolt, N

2015-07-01

To examine the occurrence and quantity of potential pathogens and an indicator of microbial contamination in the sediments of municipal drinking water storage tanks (MDWSTs), given the absence of such data across the United States. Sediment samples (87 MDWST) from eighteen locations across ten states of the United States were collected and assayed by qPCR for a range of potential enteric and opportunistic microbial pathogens and a sewage-associated Bacteroides marker. Potential opportunistic pathogens dominated, with the highest detection of occurrence (per cent positive detection; average cell equivalence (CE)) being Mycobacterium spp. (88·9%; 6·7 ± 8·5 × 10(4) CE g(-1) ), followed by Legionella spp. (66·7%; 5·2 ± 5·9 × 10(3) CE g(-1) ), Pseudomonas aeruginosa (22·2%; 250 ± 880 CE g(-1) ) and Acanthamoeba spp. (38·9%; 53 ± 70 CE g(-1) ), with no detected Naegleria fowleri. Most enteric pathogens (Campylobacter jejuni, Escherichia coli 0157:H7, Salmonella enterica, Cryptosporidium parvum and Giardia duodenalis) were not detected, except for a trace signal for Campylobacter spp. There was significant correlation between the qPCR signals of Legionella spp. and Acanthamoeba spp. (R(2) = 0·61, n = 87, P = 0·0001). Diverse Legionella spp. including Leg. pneumophila, Leg. pneumophila sg1 and Leg. anisa were identified, each of which might cause legionellosis. These results imply that potential opportunistic pathogens are common within MDWST sediments and could act as a source of microbial contamination, but need downstream growth to be of potential concern. The results imply that opportunistic pathogen risks may need to be managed by regular tank cleaning or other management practices. 2015 The Society for Applied Microbiology.

Fault finder

DOEpatents

Bunch, Richard H.

1986-01-01

A fault finder for locating faults along a high voltage electrical transmission line. Real time monitoring of background noise and improved filtering of input signals is used to identify the occurrence of a fault. A fault is detected at both a master and remote unit spaced along the line. A master clock synchronizes operation of a similar clock at the remote unit. Both units include modulator and demodulator circuits for transmission of clock signals and data. All data is received at the master unit for processing to determine an accurate fault distance calculation.

Occurrence of Polychlorinated Biphenyls (PCBs) on Suspended Sediment in the Donna Canal, Hidalgo County, Texas, 1999-2001

USGS Publications Warehouse

Mahler, B.J.; Van Metre, P.C.; Miranda, R.M.

2002-01-01

Some fish in the Donna Canal contain PCBs at levels that might pose a risk to human health if the fish are eaten. Early attempts to locate the source of PCBs in the canal were unsuccessful. An innovative method of sampling and analyzing suspended sediment helped scientists detect PCBs in suspended sediment and narrowed the probable PCB source area(s) from the entire 11-kilometer canal to a 600-meter reach.

Organochlorine insecticide residues are found in surface, irrigated water samples from several districts in Bangladesh.

PubMed

Chowdhury, Alamgir Zaman; Islam, Mohammad Nazrul; Moniruzzaman, Mohammed; Gan, Siew Hua; Alam, Md Khorshed

2013-02-01

The purpose of this study was to investigate the occurrence and distribution of organochlorines such as aldrin, dieldrin, dichlorodiphenyldichloroethylene (DDE), dichlorodiphenyldichloroethane (DDD), dichlorodiphenyltrichloroethane (DDT), endrin, lindane and heptachlor insecticide residues in irrigated surface water samples collected from 22 districts in Bangladesh. The concentrations of the pesticides were determined using gas chromatography mass spectrophotometry. Water samples from five locations (Feni, Nawabganj, Putia, Burichang and Chatak) were contaminated with DDT; the highest DDT concentration detected was 8.29 μg/L, and its metabolite, DDE, was detected at 4.06 μg/L. Water samples from four other locations (Natore, Sikderpara, Chatak and Rajoir) were contaminated with heptachlor residues, and the highest level detected was 5.24 μg/L, which is the above the maximum contaminant level recommended by the World Health Organisation. A water sample collected from Chatak, Sunamganj, was contaminated with both DDT and heptachlor pesticide residues. None of the water samples were contaminated with aldrin, DDD, dieldrin, endrin or lindane. It is concluded that continuous, long-term monitoring and essential steps to limit the use of the pesticides in Bangladesh are needed.

Measurement of oxytetracycline and emamectin benzoate in freshwater sediments downstream of land based aquaculture facilities in the Atlantic Region of Canada.

PubMed

Lalonde, Benoit A; Ernst, William; Greenwood, Lyndsay

2012-09-01

This study investigated the occurrence of oxytetracycline (OTC) and emamectin benzoate (EB) in sediments located near the effluent outfall from four freshwater aquaculture facilities in Atlantic Canada. While two facilities had no detectable concentrations of EB or OTC, two facilities had detectable concentrations of one or both of these chemicals. Concentrations ranged from <0.05-18 mg/kg to <0.01-2.5 mg/kg for OTC and EB respectively. Although these values could not be compared with freshwater toxicant values, some of the concentrations of EB and OTC detected were higher than LC(50) values calculated for marine invertebrates. OTC concentrations measured in this study are also of a magnitude which has been known to produce resistant bacteria.

Occurrence of pesticides in shallow groundwater of the United States: initial results from the National Water-Quality Assessment program

USGS Publications Warehouse

Kolpin, Dana W.; Barbash, Jack E.; Gilliom, Robert J.

1998-01-01

The first phase of intensive data collection for the National Water-Quality Assessment (NAWQA) was completed during 1993−1995 in 20 major hydrologic basins of the United States. Groundwater land-use studies, designed to sample recently recharged groundwater (generally within 10 years) beneath specific land-use and hydrogeologic settings, are a major component of the groundwater quality as sessment for NAWQA. Pesticide results from the 41 land-use studies conducted during 1993−1995 indicate that pesticides were commonly detected in shallow groundwater, having been found at 54.4% of the 1034 sites sampled in agricultural and urban settings across the United States. Pesticide concentrations were generally low, with over 95% of the detections at concentrations less than 1 μg/L. Of the 46 pesticide compounds examined, 39 were detected. The compounds detected most frequently were atrazine (38.2%), deethylatrazine (34.2%), simazine (18.0%), metolachlor (14.6%), and prometon (13.9%). Statistically significant relations were observed between frequencies of detection and the use, mobility, and persistence of these compounds. Pesticides were commonly detected in both agricultural (56.4%; 813 sites) and urban (46.6%; 221 sites) settings. Frequent detections of pesticides in urban areas indicate that, as is the case with agricultural pesticide use in agricultural areas, urban and suburban pesticide use significantly contribute to pesticide occurrence in shallow groundwater. Although pesticides were detected in groundwater sampled in urban areas and all nine of the agricultural land-use categories examined, significant variations in occurrence were observed among these categories. Maximum contaminant levels (MCLs) established by the U.S. Environmental Protection Agency for drinking water were exceeded for only one pesticide (atrazine, 3 μg/L) at a single location. However, MCLs have been established for only 25 of the 46 pesticide compounds examined, do not cover pesticide degradates, and, at present, do not take into account additive or synergistic effects of combinations of pesticide compounds or potential effects on nearby aquatic ecosystems.

Automated detection and cataloging of global explosive volcanism using the International Monitoring System infrasound network

NASA Astrophysics Data System (ADS)

Matoza, Robin S.; Green, David N.; Le Pichon, Alexis; Shearer, Peter M.; Fee, David; Mialle, Pierrick; Ceranna, Lars

2017-04-01

We experiment with a new method to search systematically through multiyear data from the International Monitoring System (IMS) infrasound network to identify explosive volcanic eruption signals originating anywhere on Earth. Detecting, quantifying, and cataloging the global occurrence of explosive volcanism helps toward several goals in Earth sciences and has direct applications in volcanic hazard mitigation. We combine infrasound signal association across multiple stations with source location using a brute-force, grid-search, cross-bearings approach. The algorithm corrects for a background prior rate of coherent unwanted infrasound signals (clutter) in a global grid, without needing to screen array processing detection lists from individual stations prior to association. We develop the algorithm using case studies of explosive eruptions: 2008 Kasatochi, Alaska; 2009 Sarychev Peak, Kurile Islands; and 2010 Eyjafjallajökull, Iceland. We apply the method to global IMS infrasound data from 2005-2010 to construct a preliminary acoustic catalog that emphasizes sustained explosive volcanic activity (long-duration signals or sequences of impulsive transients lasting hours to days). This work represents a step toward the goal of integrating IMS infrasound data products into global volcanic eruption early warning and notification systems. Additionally, a better understanding of volcanic signal detection and location with the IMS helps improve operational event detection, discrimination, and association capabilities.

Eliminating Inhibition of Return by Changing Salient Non-spatial Attributes in a Complex Environment

PubMed Central

Hu, Frank K; Samuel, Arthur G.; Chan, Agnes S.

2010-01-01

Inhibition of Return (IOR) occurs when a target is preceded by an irrelevant stimulus (cue) at the same location: Target detection is slowed, relative to uncued locations. In the present study, we used relatively complex displays to examine the effect of repetition of nonspatial attributes. For both color and shape, attribute repetition produced a robust inhibitory effect that followed a time course similar to that for location-based IOR. However, the effect only occurred when the target shared both the feature (i.e., color or shape) and location with the cue; this constraint implicates a primary role for location. The data are consistent with the idea that the system integrates consecutive stimuli into a single object file when attributes repeat, hindering detection of the second stimulus. The results are also consistent with an interpretation of IOR as a form of habituation, with greater habituation occurring with increasing featural overlap of a repeated stimulus. Critically, both of these interpretations bring the IOR effect within more general approaches to attention and perception, rather than requiring a specialized process with a limited function. In this view, there is no process specifically designed to inhibit return, suggesting that “IOR” may be the wrong framing of inhibitory repetition effects. Instead, we suggest that repetition of stimulus properties can interfere with the ability to focus attention on the aspects of a complex display that are needed to detect the occurrence of the target stimulus; this is a failure of activation, not an inhibition of processing. PMID:21171801

Occurrence of pharmaceuticals and other organic wastewater constituents in selected streams in northern Arkansas, 2004

USGS Publications Warehouse

Galloway, Joel M.; Haggard, Brian E.; Meyers, Michael T.; Green, W. Reed

2005-01-01

The U.S. Geological Survey, in cooperation with the University of Arkansas and the U.S. Department of Agriculture, Agricultural Research Service, collected data in 2004 to determine the occurrence of pharmaceuticals and other organic wastewater constituents, including many constituents of emerging environmental concern, in selected streams in northern Arkansas. Samples were collected in March and April 2004 from 17 sites located upstream and downstream from wastewater- treatment plant effluent discharges on 7 streams in northwestern Arkansas and at 1 stream site in a relatively undeveloped basin in north-central Arkansas. Additional samples were collected at three of the sites in August 2004. The targeted organic wastewater constituents and sample sites were selected because wastewater-treatment plant effluent discharge provides a potential point source of these constituents and analytical techniques have improved to accurately measure small amounts of these constituents in environmental samples. At least 1 of the 108 pharmaceutical or other organic wastewater constituents was detected at all sites in 2004, except at Spavinaw Creek near Maysville, Arkansas. The number of detections generally was greater at sites downstream from municipal wastewater-treatment plant effluent discharges (mean = 14) compared to sites not influenced by wastewatertreatment plants (mean = 3). Overall, 42 of the 108 constituents targeted in the collected water-quality samples were detected. The most frequently detected constituents included caffeine, phenol, para-cresol, and acetyl hexamethyl tetrahydro naphthalene.

Relation Between Sprite Distribution and Source Locations of VHF Pulses Derived From JEM- GLIMS Measurements

NASA Astrophysics Data System (ADS)

Sato, Mitsuteru; Mihara, Masahiro; Ushio, Tomoo; Morimoto, Takeshi; Kikuchi, Hiroshi; Adachi, Toru; Suzuki, Makoto; Yamazaki, Atsushi; Takahashi, Yukihiro

2015-04-01

JEM-GLIMS is continuing the comprehensive nadir observations of lightning and TLEs using optical instruments and electromagnetic wave receivers since November 2012. For the period between November 20, 2012 and November 30, 2014, JEM-GLIMS succeeded in detecting 5,048 lightning events. A total of 567 events in 5,048 lightning events were TLEs, which were mostly elves events. To identify the sprite occurrences from the transient optical flash data, it is necessary to perform the following data analysis: (1) a subtraction of the appropriately scaled wideband camera data from the narrowband camera data; (2) a calculation of intensity ratio between different spectrophotometer channels; and (3) an estimation of the polarization and CMC for the parent CG discharges using ground-based ELF measurement data. From a synthetic comparison of these results, it is confirmed that JEM-GLISM succeeded in detecting sprite events. The VHF receiver (VITF) onboard JEM-GLIMS uses two patch-type antennas separated by a 1.6-m interval and can detect VHF pulses emitted by lightning discharges in the 70-100 MHz frequency range. Using both an interferometric technique and a group delay technique, we can estimate the source locations of VHF pulses excited by lightning discharges. In the event detected at 06:41:15.68565 UT on June 12, 2014 over central North America, sprite was distributed with a horizontal displacement of 20 km from the peak location of the parent lightning emission. In this event, a total of 180 VHF pulses were simultaneously detected by VITF. From the detailed data analysis of these VHF pulse data, it is found that the majority of the source locations were placed near the area of the dim lightning emission, which may imply that the VHF pulses were associated with the in-cloud lightning current. At the presentation, we will show detailed comparison between the spatiotemporal characteristics of sprite emission and source locations of VHF pulses excited by the parent lightning discharges of sprites.

Origin of VC-only plumes from naturally enhanced dechlorination in a peat-rich hydrogeologic setting

NASA Astrophysics Data System (ADS)

Filippini, Maria; Amorosi, Alessandro; Campo, Bruno; Herrero-Martìn, Sara; Nijenhuis, Ivonne; Parker, Beth L.; Gargini, Alessandro

2016-09-01

The occurrence of vinyl chloride (VC) is often a main concern at sites contaminated with chlorinated solvents due to its high degree of toxicity and carcinogenicity. VC occurrence in aquifers is most often related to the degradation of higher chlorinated ethenes or ethanes and it is generally detected in plumes along with parent contaminants. However, specific combination of stratigraphic, hydrogeologic and geochemical conditions can enhance the degradation of parents and lead to the formation of plumes almost entirely composed of VC (i.e. VC-only plumes). This paper investigates the causes of VC-only plumes in the aquifers below the city of Ferrara (northern Italy) by combining multiple lines of evidence. The City of Ferrara is located on an alluvial lowland, built by the River Po, and is made up of alternating unconsolidated sandy aquifer and silt-clay aquitard deposits of fluvial origin. This region has been strongly impacted by prior industrial activities, with the occurrence of chlorinated compounds at several sites. VC-only plumes with uncertain source location were found at two contaminated sites. The source zone of a third plume composed of chloroethenes from PCE to VC was investigated for high resolution depositional facies architecture and contaminant distribution (contaminant concentration and Compound Specific Isotope Analysis - CSIA). The investigation suggested that degradation of PCE and TCE takes place during contaminant migration through peat-rich (swamp) layers related to the Holocene transgression, which locally act as a ;reactor; for stimulating degradation with the accumulation of VC in the strongly reducing environment of the peat. Regional-scale stratigraphic architecture showed the ubiquitous occurrence of swamp layers at distinct stratigraphic levels in the investigated system and their apparent linkage to the in situ creation of the VC-only plumes.

Spatial controls of occurrence and spread of wildfires in the Missouri Ozark Highlands.

PubMed

Yang, Jian; He, Hong S; Shifley, Stephen R

2008-07-01

Understanding spatial controls on wildfires is important when designing adaptive fire management plans and optimizing fuel treatment locations on a forest landscape. Previous research about this topic focused primarily on spatial controls for fire origin locations alone. Fire spread and behavior were largely overlooked. This paper contrasts the relative importance of biotic, abiotic, and anthropogenic constraints on the spatial pattern of fire occurrence with that on burn probability (i.e., the probability that fire will spread to a particular location). Spatial point pattern analysis and landscape succession fire model (LANDIS) were used to create maps to show the contrast. We quantified spatial controls on both fire occurrence and fire spread in the Midwest Ozark Highlands region, USA. This area exhibits a typical anthropogenic surface fire regime. We found that (1) human accessibility and land ownership were primary limiting factors in shaping clustered fire origin locations; (2) vegetation and topography had a negligible influence on fire occurrence in this anthropogenic regime; (3) burn probability was higher in grassland and open woodland than in closed-canopy forest, even though fire occurrence density was less in these vegetation types; and (4) biotic and abiotic factors were secondary descriptive ingredients for determining the spatial patterns of burn probability. This study demonstrates how fire occurrence and spread interact with landscape patterns to affect the spatial distribution of wildfire risk. The application of spatial point pattern data analysis would also be valuable to researchers working on landscape forest fire models to integrate historical ignition location patterns in fire simulation.

Convective Weather Forecast Quality Metrics for Air Traffic Management Decision-Making

NASA Technical Reports Server (NTRS)

Chatterji, Gano B.; Gyarfas, Brett; Chan, William N.; Meyn, Larry A.

2006-01-01

Since numerical weather prediction models are unable to accurately forecast the severity and the location of the storm cells several hours into the future when compared with observation data, there has been a growing interest in probabilistic description of convective weather. The classical approach for generating uncertainty bounds consists of integrating the state equations and covariance propagation equations forward in time. This step is readily recognized as the process update step of the Kalman Filter algorithm. The second well known method, known as the Monte Carlo method, consists of generating output samples by driving the forecast algorithm with input samples selected from distributions. The statistical properties of the distributions of the output samples are then used for defining the uncertainty bounds of the output variables. This method is computationally expensive for a complex model compared to the covariance propagation method. The main advantage of the Monte Carlo method is that a complex non-linear model can be easily handled. Recently, a few different methods for probabilistic forecasting have appeared in the literature. A method for computing probability of convection in a region using forecast data is described in Ref. 5. Probability at a grid location is computed as the fraction of grid points, within a box of specified dimensions around the grid location, with forecast convection precipitation exceeding a specified threshold. The main limitation of this method is that the results are dependent on the chosen dimensions of the box. The examples presented Ref. 5 show that this process is equivalent to low-pass filtering of the forecast data with a finite support spatial filter. References 6 and 7 describe the technique for computing percentage coverage within a 92 x 92 square-kilometer box and assigning the value to the center 4 x 4 square-kilometer box. This technique is same as that described in Ref. 5. Characterizing the forecast, following the process described in Refs. 5 through 7, in terms of percentage coverage or confidence level is notionally sound compared to characterizing in terms of probabilities because the probability of the forecast being correct can only be determined using actual observations. References 5 through 7 only use the forecast data and not the observations. The method for computing the probability of detection, false alarm ratio and several forecast quality metrics (Skill Scores) using both the forecast and observation data are given in Ref. 2. This paper extends the statistical verification method in Ref. 2 to determine co-occurrence probabilities. The method consists of computing the probability that a severe weather cell (grid location) is detected in the observation data in the neighborhood of the severe weather cell in the forecast data. Probabilities of occurrence at the grid location and in its neighborhood with higher severity, and with lower severity in the observation data compared to that in the forecast data are examined. The method proposed in Refs. 5 through 7 is used for computing the probability that a certain number of cells in the neighborhood of severe weather cells in the forecast data are seen as severe weather cells in the observation data. Finally, the probability of existence of gaps in the observation data in the neighborhood of severe weather cells in forecast data is computed. Gaps are defined as openings between severe weather cells through which an aircraft can safely fly to its intended destination. The rest of the paper is organized as follows. Section II summarizes the statistical verification method described in Ref. 2. The extension of this method for computing the co-occurrence probabilities in discussed in Section HI. Numerical examples using NCWF forecast data and NCWD observation data are presented in Section III to elucidate the characteristics of the co-occurrence probabilities. This section also discusses the procedure for computing throbabilities that the severity of convection in the observation data will be higher or lower in the neighborhood of grid locations compared to that indicated at the grid locations in the forecast data. The probability of coverage of neighborhood grid cells is also described via examples in this section. Section IV discusses the gap detection algorithm and presents a numerical example to illustrate the method. The locations of the detected gaps in the observation data are used along with the locations of convective weather cells in the forecast data to determine the probability of existence of gaps in the neighborhood of these cells. Finally, the paper is concluded in Section V.

Enteric Viruses in Raw Vegetables and Groundwater Used for Irrigation in South Korea▿

PubMed Central

Cheong, Sooryun; Lee, Cheonghoon; Song, Sung Won; Choi, Weon Cheon; Lee, Chan Hee; Kim, Sang-Jong

2009-01-01

Raw vegetables irrigated with groundwater that may contain enteric viruses can be associated with food-borne viral disease outbreaks. In this study, we performed reverse transcription-PCR (RT-PCR) and cell culture-PCR to monitor the occurrence of enteric viruses in groundwater samples and in raw vegetables that were cultivated using that groundwater in South Korea. Samples were collected 10 times from three farms located in Gyeonggi Province, South Korea. RT-PCR and cell culture-PCR were performed to detect adenoviruses (AdVs), enteroviruses (EVs), noroviruses (NoVs), and rotaviruses, followed by sequence analyses of the detected strains. Of the 29 groundwater samples and the 30 vegetable samples, five (17%) and three (10%) were positive for enteric viruses, respectively. AdVs were the most frequently detected viruses in four groundwater and three vegetable samples. EVs and NoVs were detected in only one groundwater sample and one spinach sample, respectively. The occurrence of enteric viruses in groundwater and vegetable samples was not correlated with the water temperature and the levels of indicator bacteria, respectively. Phylogenetic analysis indicated that most of the detected AdVs were temporally distributed, irrespective of sample type. Our results indicate that raw vegetables may be contaminated with a broad range of enteric viruses, which may originate from virus-infected farmers and virus-contaminated irrigation water, and these vegetables may act as a potential vector of food-borne viral transmission. PMID:19854919

A formal theory of feature binding in object perception.

PubMed

Ashby, F G; Prinzmetal, W; Ivry, R; Maddox, W T

1996-01-01

Visual objects are perceived correctly only if their features are identified and then bound together. Illusory conjunctions result when feature identification is correct but an error occurs during feature binding. A new model is proposed that assumes feature binding errors occur because of uncertainty about the location of visual features. This model accounted for data from 2 new experiments better than a model derived from A. M. Treisman and H. Schmidt's (1982) feature integration theory. The traditional method for detecting the occurrence of true illusory conjunctions is shown to be fundamentally flawed. A reexamination of 2 previous studies provided new insights into the role of attention and location information in object perception and a reinterpretation of the deficits in patients who exhibit attentional disorders.

Method of detecting leakage of reactor core components of liquid metal cooled fast reactors

DOEpatents

Holt, Fred E.; Cash, Robert J.; Schenter, Robert E.

1977-01-01

A method of detecting the failure of a sealed non-fueled core component of a liquid-metal cooled fast reactor having an inert cover gas. A gas mixture is incorporated in the component which includes Xenon-124; under neutron irradiation, Xenon-124 is converted to radioactive Xenon-125. The cover gas is scanned by a radiation detector. The occurrence of 188 Kev gamma radiation and/or other identifying gamma radiation-energy level indicates the presence of Xenon-125 and therefore leakage of a component. Similarly, Xe-126, which transmutes to Xe-127 and Kr-84, which produces Kr-85.sup.m can be used for detection of leakage. Different components are charged with mixtures including different ratios of isotopes other than Xenon-124. On detection of the identifying radiation, the cover gas is subjected to mass spectroscopic analysis to locate the leaking component.

[Mutation analysis of beta myosin heavy chain gene in hypertrophic cardiomyopathy families].

PubMed

Fan, Xin-ping; Yang, Zhong-wei; Feng, Xiu-li; Yang, Fu-hui; Xiao, Bai; Liang, Yan

2011-08-01

To detect the gene mutations of beta-myosin heavy chain gene (MYH7) in Chinese pedigrees with hypertrophic cardiomyopathy (HCM), and to analyze the correlation between the genotype and phenotype. Exons 3, 5, 7-9, 11-16 and 18-23 of the MYH7 gene were amplified with PCR in three Chinese pedigrees with HCM. The products were sequenced. Sequence alignment between the detected and the standard sequences was performed. A missense mutation of Thr441Met in exon 14 was identified in a pedigree, which was not detected in the controls. Several synonymous mutations of MYH7 gene were detected in the three pedigrees. The mutation of Thr441Met, located in the actin binding domain of the globular head, was first identified in Chinese. It probably caused HCM. HCM is a heterogeneous disease. Many factors are involved in the process of its occurrence and development.

Mapping the invasive species, Chinese tallow, with EO1 satellite Hyperion hyperspectral image data and relating tallow occurrences to a classified Landsat Thematic Mapper land cover map

USGS Publications Warehouse

Ramsey, Elijah W.; Rangoonwala, A.; Nelson, G.; Ehrlich, R.

2005-01-01

Our objective was to provide a realistic and accurate representation of the spatial distribution of Chinese tallow (Triadica sebifera) in the Earth Observing 1 (EO1) Hyperion hyperspectral image coverage by using methods designed and tested in previous studies. We transformed, corrected, and normalized Hyperion reflectance image data into composition images with a subpixel extraction model. Composition images were related to green vegetation, senescent foliage and senescing cypress-tupelo forest, senescing Chinese tallow with red leaves ('red tallow'), and a composition image that only corresponded slightly to yellowing vegetation. These statistical and visual comparisons confirmed a successful portrayal of landscape features at the time of the Hyperion image collection. These landscape features were amalgamated in the Landsat Thematic Mapper (TM) pixel, thereby preventing the detection of Chinese tallow occurrences in the Landsat TM classification. With the occurrence in percentage of red tallow (as a surrogate for Chinese tallow) per pixel mapped, we were able to link dominant land covers generated with Landsat TM image data to Chinese tallow occurrences as a first step toward determining the sensitivity and susceptibility of various land covers to tallow establishment. Results suggested that the highest occurrences and widest distribution of red tallow were (1) apparent in disturbed or more open canopy woody wetland deciduous forests (including cypress-tupelo forests), upland woody land evergreen forests (dominantly pines and seedling plantations), and upland woody land deciduous and mixed forests; (2) scattered throughout the fallow fields or located along fence rows separating active and non-active cultivated and grazing fields, (3) found along levees lining the ubiquitous canals within the marsh and on the cheniers near the coastline; and (4) present within the coastal marsh located on the numerous topographic highs. ?? 2005 US Government.

10 CFR 140.93 - Appendix C-Form of indemnity agreement with licensees furnishing proof of financial protection in...

Code of Federal Regulations, 2011 CFR

2011-01-01

..., as amended, and the regulations issued by the Commission. 2.(a) For facilities designed for producing... occurrence including an extraordinary nuclear occurrence or series of occurrences at the location or in the... extraordinary nuclear occurrence or series of occurrences causing bodily injury, sickness, disease or death, or...

10 CFR 140.93 - Appendix C-Form of indemnity agreement with licensees furnishing proof of financial protection in...

Code of Federal Regulations, 2014 CFR

2014-01-01

..., as amended, and the regulations issued by the Commission. 2.(a) For facilities designed for producing... occurrence including an extraordinary nuclear occurrence or series of occurrences at the location or in the... extraordinary nuclear occurrence or series of occurrences causing bodily injury, sickness, disease or death, or...

10 CFR 140.93 - Appendix C-Form of indemnity agreement with licensees furnishing proof of financial protection in...

Code of Federal Regulations, 2010 CFR

2010-01-01

..., as amended, and the regulations issued by the Commission. 2.(a) For facilities designed for producing... occurrence including an extraordinary nuclear occurrence or series of occurrences at the location or in the... extraordinary nuclear occurrence or series of occurrences causing bodily injury, sickness, disease or death, or...

10 CFR 140.93 - Appendix C-Form of indemnity agreement with licensees furnishing proof of financial protection in...

Code of Federal Regulations, 2012 CFR

2012-01-01

..., as amended, and the regulations issued by the Commission. 2.(a) For facilities designed for producing... occurrence including an extraordinary nuclear occurrence or series of occurrences at the location or in the... extraordinary nuclear occurrence or series of occurrences causing bodily injury, sickness, disease or death, or...

10 CFR 140.93 - Appendix C-Form of indemnity agreement with licensees furnishing proof of financial protection in...

Code of Federal Regulations, 2013 CFR

2013-01-01

..., as amended, and the regulations issued by the Commission. 2.(a) For facilities designed for producing... occurrence including an extraordinary nuclear occurrence or series of occurrences at the location or in the... extraordinary nuclear occurrence or series of occurrences causing bodily injury, sickness, disease or death, or...

Behavioural evidence of male volatile pheromones in the sex-role reversed wolf spiders Allocosa brasiliensis and Allocosa alticeps

NASA Astrophysics Data System (ADS)

Aisenberg, Anita; Baruffaldi, Luciana; González, Macarena

2010-01-01

The use of chemical signals in a sexual context is widespread in the animal kingdom. Most studies in spiders report the use of female pheromones that attract potential sexual partners. Allocosa brasiliensis and Allocosa alticeps are two burrowing wolf spiders that show sex-role reversal. Females locate male burrows and initiate courtship before males perform any detectable visual or vibratory signal. So, females of these species would be detecting chemical or mechanical cues left by males. Our objective was to explore the potential for male pheromones to play a role in mate detection in A. brasiliensis and A. alticeps. We designed two experiments. In Experiment 1, we tested the occurrence of male contact pheromones by evaluating female courtship when exposed to empty burrows constructed by males or females (control). In Experiment 2, we tested the existence of male volatile pheromones by evaluating female behaviour when exposed to artificial burrows connected to tubes containing males, females or empty tubes (control). Our results suggest the occurrence of male volatile pheromones that trigger female courtship in both Allocosa species. The sex-role reversal postulated for these wolf spiders could be driving the consequent reversal in typical pheromone-emitter and detector roles expected for spiders.

Geographic distribution suggests that Solenopsis invicta is the host of predilection for Solenopsis invicta virus 1.

PubMed

Valles, Steven M; Oi, David H; Plowes, Robert M; Sanchez-Arroyo, Hussein; Varone, Laura; Conant, Pat; Webb, Garry

2013-07-01

Solenopsis invicta virus 1 (SINV-1) was found regularly and prevalently in S. invicta. In sampled locations where S. invicta and S. geminata are sympatric (specifically, Gainesville, FL and Travis, TX), SINV-1 was detected in S. geminata. Conversely, in areas in which S. geminata and S. invicta are allopatric, SINV-1 was not detected in S. geminata; these locations included north Australia (n=12), southern Mexico (n=107), Hawaii (n=48), Taiwan (n=12), and the Johnston Atoll (n=6). A similar relationship was observed for S. richteri. In areas in which S. invicta and S. richteri were sympatric, SINV-1 was detected in the S. richteri population, but in areas in which S. invicta and S. richteri were allopatric, SINV-1 was not detected. These occurrences suggest that S. invicta is the host of predilection, or preferred host for SINV-1, and that the congenerics, S. geminata and S. richteri serve as either accidental, reservoir, or transfer hosts. The minus genome strand of SINV-1 was detected in S. geminata and S. richteri indicating that these species may serve as functional hosts capable of supporting SINV-1 replication. SINV-1 was not detected in S. xyloni regardless of its proximity to S. invicta. These results suggest that SINV-1 may be an example of pathogen spillover or pollution. Published by Elsevier Inc.

Detecting surface runoff location in a small catchment using distributed and simple observation method

NASA Astrophysics Data System (ADS)

Dehotin, Judicaël; Breil, Pascal; Braud, Isabelle; de Lavenne, Alban; Lagouy, Mickaël; Sarrazin, Benoît

2015-06-01

Surface runoff is one of the hydrological processes involved in floods, pollution transfer, soil erosion and mudslide. Many models allow the simulation and the mapping of surface runoff and erosion hazards. Field observations of this hydrological process are not common although they are crucial to evaluate surface runoff models and to investigate or assess different kinds of hazards linked to this process. In this study, a simple field monitoring network is implemented to assess the relevance of a surface runoff susceptibility mapping method. The network is based on spatially distributed observations (nine different locations in the catchment) of soil water content and rainfall events. These data are analyzed to determine if surface runoff occurs. Two surface runoff mechanisms are considered: surface runoff by saturation of the soil surface horizon and surface runoff by infiltration excess (also called hortonian runoff). The monitoring strategy includes continuous records of soil surface water content and rainfall with a 5 min time step. Soil infiltration capacity time series are calculated using field soil water content and in situ measurements of soil hydraulic conductivity. Comparison of soil infiltration capacity and rainfall intensity time series allows detecting the occurrence of surface runoff by infiltration-excess. Comparison of surface soil water content with saturated water content values allows detecting the occurrence of surface runoff by saturation of the soil surface horizon. Automatic records were complemented with direct field observations of surface runoff in the experimental catchment after each significant rainfall event. The presented observation method allows the identification of fast and short-lived surface runoff processes at a small spatial and temporal resolution in natural conditions. The results also highlight the relationship between surface runoff and factors usually integrated in surface runoff mapping such as topography, rainfall parameters, soil or land cover. This study opens interesting prospects for the use of spatially distributed measurement for surface runoff detection, spatially distributed hydrological models implementation and validation at a reasonable cost.

Location of early aftershocks of the 2004 Mid-Niigata Prefecture Earthquake (M = 6.8) in central Japan using seismogram envelopes as templates

NASA Astrophysics Data System (ADS)

Kosuga, M.

2013-12-01

The location of early aftershocks is very important to obtain information of mainshock fault, however, it is often difficult due to the long-lasting coda wave of mainshock and successive occurrence of afterrshocks. To overcome this difficulty, we developed a method of location using seismogram envelopes as templates, and applied the method to the early aftershock sequence of the 2004 Mid-Niigata Prefecture (Chuetsu) Earthquake (M = 6.8) in central Japan. The location method composes of three processes. The first process is the calculation of cross-correlation coefficients between a continuous (target) and template envelopes. We prepare envelopes by taking the logarithm of root-mean-squared amplitude of band-pass filtered seismograms. We perform the calculation by shifting the time window to obtain a set of cross-correlation values for each template. The second process is the event detection (selection of template) and magnitude estimate. We search for the events in descending order of cross-correlation in a time window excluding the dead times around the previously detected events. Magnitude is calculated by the amplitude ratio of target and template envelopes. The third process is the relative event location to the selected template. We applied this method to the Chuetsu earthquake, a large inland earthquake with extensive aftershock activity. The number of detected events depends on the number of templates, frequency range, and the threshold value of cross-correlation. We set the threshold as 0.5 by referring to the histogram of cross-correlation. During a period of one-hour from the mainshock, we could detect more events than the JMA catalog. The location of events is generally near the catalog location. Though we should improve the methods of relative location and magnitude estimate, we conclude that the proposed method works adequately even just after the mainshock of large inland earthquake. Acknowledgement: We thank JMA, NIED, and the University of Tokyo for providing arrival time data, and waveform data. This work was supported by JSPS KAKENHI Grant Number 23540487.

Fault detection and isolation for complex system

NASA Astrophysics Data System (ADS)

Jing, Chan Shi; Bayuaji, Luhur; Samad, R.; Mustafa, M.; Abdullah, N. R. H.; Zain, Z. M.; Pebrianti, Dwi

2017-07-01

Fault Detection and Isolation (FDI) is a method to monitor, identify, and pinpoint the type and location of system fault in a complex multiple input multiple output (MIMO) non-linear system. A two wheel robot is used as a complex system in this study. The aim of the research is to construct and design a Fault Detection and Isolation algorithm. The proposed method for the fault identification is using hybrid technique that combines Kalman filter and Artificial Neural Network (ANN). The Kalman filter is able to recognize the data from the sensors of the system and indicate the fault of the system in the sensor reading. Error prediction is based on the fault magnitude and the time occurrence of fault. Additionally, Artificial Neural Network (ANN) is another algorithm used to determine the type of fault and isolate the fault in the system.

The occurrence of cyanobacteria in pulp and paper waste-treatment systems.

PubMed

Kirkwood, A E; Nalewajko, C; Fulthorpe, R R

2001-08-01

Pulp and paper secondary waste-treatment systems in Brazil, Canada, New Zealand, and the U.S.A. contained dynamic cyanobacterial communities, some of which exceeded heterotrophic bacterial biomass. No other viable photoautotrophic populations were detected in the ponds. Regardless of geographical location, Oscillatoriales including Phormidium, Geitlerinema, and Pseudanabaena were the dominant taxa. As well, Chroococcus (Chroococcales) was an important genus in Brazil and New Zealand. The possible impact of cyanobacteria on waste-treatment efficiency deserves further study given their large biomass and diverse metabolic characteristics.

Spatio-temporal variation and seasonality of Odontocetes' foraging activity in the leeward side of the island of Hawaii

NASA Astrophysics Data System (ADS)

Giorli, Giacomo; Au, Whitlow W. L.

2017-03-01

The Kona coast of the island of Hawaii hosts many species of odontocetes. These marine mammals are top predators and their foraging activity plays an important role in the ecosystem dynamics. Three passive acoustics recorders were used to study the temporal and spatial occurrence of the foraging activity of odontocetes (excluding beaked and sperm whales) at three locations along the Kona coast of Hawaii between 2012 and 2013. Echolocation clicks were detected using the M3R1

The relationship between land management, fecal indicator bacteria, and the occurrence of Campylobacter and Listeria spp. in water and sediments during synoptic sampling in the S. Fork Broad River Watershed, N.E. Georgia, U.S.A

NASA Astrophysics Data System (ADS)

Bradshaw, J. K.; Molina, M.; Sidle, R. C.; Sullivan, K.; Oakley, B.; Berrang, M.; Meinersmann, R.

2013-12-01

Fecal indicator bacteria (FIB) and pathogens stored in the bed sediments of streams and rivers may be mobilized into the water column affecting overall water quality. Furthermore, land management may play an important role in the concentrations of FIB and the occurrence of pathogens in stream water and sediments. The purpose of this study was to determine the relationship between FIB and pathogens in stream water and sediment based on three land management-affected categories: agricultural, forest, and waters receiving treated municipal wastewater. Two synoptic sampling events were conducted under baseflow conditions (<0.64 cm of rain within 24h) between October-November, 2012 and May-June, 2013. Counts of the E. coli and E. faecalis and occurrences of the enteric pathogens Campylobacter and Listeria spp. were measured in stream water and sediment samples collected at 15 locations (six agricultural (AG); six forested (FORS); and three receiving discharge from water pollution control plants (WPCP)) in the S. Fork Broad River watershed located in northeast Georgia, USA. Mean E. coli and E. faecalis concentrations were highest in the AG stream water samples (3.08 log MPN 100 mL -1 for E. coli and 3.07 log CFU 100 mL -1 for E. faecalis ) and lowest in the FORS water samples for E. coli (2.37 log MPN 100 mL -1 ) and WPCP water samples for E. faecalis (2.53 log CFU 100 mL -1 ). E. coli concentrations (2.74 log MPN 100 mL -1 ) in the WPCP streams were intermediate. Similar to water samples, E. coli concentrations were highest in the AG sediments (4.31 log MPN g -1 ), intermediate in the WPCP sediments (4.06 log MPN g -1 ), and lowest in the FORS sediments (3.46 log MPN g -1 ). In contrast to E. coli, E. faecalis concentrations were lower (1.10 to 1.31 log CFU g -1 ) and relatively more constant than E. coli in sediments over the three land management categories. Campylobacter was detected in 27% of the water samples and 8% of the sediment samples. The highest occurrence of Campylobacter detection was in the AG streams (15% of the water samples; 5% of the sediment samples). Listeria was detected in 76% of the water samples and 65% of the sediment samples. The FORS and AG streams had the highest occurrence of Listeria in water and sediment (32% and 29% of the water samples, respectively; 24% and 29% of sediment samples, respectively) suggesting Listeria is fairly ubiquitous in these streams. Based on the high concentrations of E. faecalis in water and E. coli in water and sediment, and higher frequency of Campylobacter detection in the AG streams, this study indicates that E. coli and Campylobacter may occur in high concentrations in stream sediments in land management areas where fecal material is deposited directly by livestock into the stream or adjacent land in large doses.

Temperature and heat wave trends in northwest Mexico

NASA Astrophysics Data System (ADS)

Martínez-Austria, Polioptro F.; Bandala, Erick R.; Patiño-Gómez, Carlos

2016-02-01

Increase in temperature extremes is one of the main expected impacts of climate change, as well as one of the first signs of its occurrence. Nevertheless, results emerging from General Circulation Models, while sufficient for large scales, are not enough for forecasting local trends and, hence, the IPCC has called for local studies based on on-site data. Indeed, it is expected that climate extremes will be detected much earlier than changes in climate averages. Heat waves are among the most important and least studied climate extremes, however its occurrence has been only barely studied and even its very definition remains controversial. This paper discusses the observed changes in temperature trends and heat waves in Northwestern Mexico, one of the most vulnerable regions of the country. The climate records in two locations of the region are analyzed, including one of the cities with extreme climate in Mexico, Mexicali City in the state of Baja California and the Yaqui River basin at Sonora State using three different methodologies. Results showed clear trends on temperature increase and occurrence of heat waves in both of the study zones using the three methodologies proposed. As result, some policy making suggestion are included in order to increase the adaptability of the studied regions to climate change, particularly related with heat wave occurrence.

Detection of regional infrasound signals using array data: Testing, tuning, and physical interpretation

DOE PAGES

Park, Junghyun; Stump, Brian W.; Hayward, Chris; ...

2016-07-14

This work quantifies the physical characteristics of infrasound signal and noise, assesses their temporal variations, and determines the degree to which these effects can be predicted by time-varying atmospheric models to estimate array and network performance. An automated detector that accounts for both correlated and uncorrelated noise is applied to infrasound data from three seismo-acoustic arrays in South Korea (BRDAR, CHNAR, and KSGAR), cooperatively operated by Korea Institute of Geoscience and Mineral Resources (KIGAM) and Southern Methodist University (SMU). Arrays located on an island and near the coast have higher noise power, consistent with both higher wind speeds and seasonablymore » variable ocean wave contributions. On the basis of the adaptive F-detector quantification of time variable environmental effects, the time-dependent scaling variable is shown to be dependent on both weather conditions and local site effects. Significant seasonal variations in infrasound detections including daily time of occurrence, detection numbers, and phase velocity/azimuth estimates are documented. These time-dependent effects are strongly correlated with atmospheric winds and temperatures and are predicted by available atmospheric specifications. As a result, this suggests that commonly available atmospheric specifications can be used to predict both station and network detection performance, and an appropriate forward model improves location capabilities as a function of time.« less

Detection of regional infrasound signals using array data: Testing, tuning, and physical interpretation.

PubMed

Park, Junghyun; Stump, Brian W; Hayward, Chris; Arrowsmith, Stephen J; Che, Il-Young; Drob, Douglas P

2016-07-01

This work quantifies the physical characteristics of infrasound signal and noise, assesses their temporal variations, and determines the degree to which these effects can be predicted by time-varying atmospheric models to estimate array and network performance. An automated detector that accounts for both correlated and uncorrelated noise is applied to infrasound data from three seismo-acoustic arrays in South Korea (BRDAR, CHNAR, and KSGAR), cooperatively operated by Korea Institute of Geoscience and Mineral Resources (KIGAM) and Southern Methodist University (SMU). Arrays located on an island and near the coast have higher noise power, consistent with both higher wind speeds and seasonably variable ocean wave contributions. On the basis of the adaptive F-detector quantification of time variable environmental effects, the time-dependent scaling variable is shown to be dependent on both weather conditions and local site effects. Significant seasonal variations in infrasound detections including daily time of occurrence, detection numbers, and phase velocity/azimuth estimates are documented. These time-dependent effects are strongly correlated with atmospheric winds and temperatures and are predicted by available atmospheric specifications. This suggests that commonly available atmospheric specifications can be used to predict both station and network detection performance, and an appropriate forward model improves location capabilities as a function of time.

Automatic streak endpoint localization from the cornerness metric

NASA Astrophysics Data System (ADS)

Sease, Brad; Flewelling, Brien; Black, Jonathan

2017-05-01

Streaked point sources are a common occurrence when imaging unresolved space objects from both ground- and space-based platforms. Effective localization of streak endpoints is a key component of traditional techniques in space situational awareness related to orbit estimation and attitude determination. To further that goal, this paper derives a general detection and localization method for streak endpoints based on the cornerness metric. Corners detection involves searching an image for strong bi-directional gradients. These locations typically correspond to robust structural features in an image. In the case of unresolved imagery, regions with a high cornerness score correspond directly to the endpoints of streaks. This paper explores three approaches for global extraction of streak endpoints and applies them to an attitude and rate estimation routine.

10 CFR 140.92 - Appendix B-Form of indemnity agreement with licensees furnishing insurance policies as proof of...

Code of Federal Regulations, 2014 CFR

2014-01-01

... Commission. 2.(a) For facilities designed for producing substantial amounts of electricity and having a rated... nuclear occurrence or series of occurrences at the location or in the course of transportation causing... radioactive material. (b) Any occurrence including an extraordinary nuclear occurrence or series of...

10 CFR 140.92 - Appendix B-Form of indemnity agreement with licensees furnishing insurance policies as proof of...

Code of Federal Regulations, 2013 CFR

2013-01-01

... Commission. 2.(a) For facilities designed for producing substantial amounts of electricity and having a rated... nuclear occurrence or series of occurrences at the location or in the course of transportation causing... radioactive material. (b) Any occurrence including an extraordinary nuclear occurrence or series of...

10 CFR 140.92 - Appendix B-Form of indemnity agreement with licensees furnishing insurance policies as proof of...

Code of Federal Regulations, 2012 CFR

2012-01-01

... Commission. 2.(a) For facilities designed for producing substantial amounts of electricity and having a rated... nuclear occurrence or series of occurrences at the location or in the course of transportation causing... radioactive material. (b) Any occurrence including an extraordinary nuclear occurrence or series of...

10 CFR 140.92 - Appendix B-Form of indemnity agreement with licensees furnishing insurance policies as proof of...

Code of Federal Regulations, 2011 CFR

2011-01-01

... Commission. 2.(a) For facilities designed for producing substantial amounts of electricity and having a rated... nuclear occurrence or series of occurrences at the location or in the course of transportation causing... radioactive material. (b) Any occurrence including an extraordinary nuclear occurrence or series of...

10 CFR 140.92 - Appendix B-Form of indemnity agreement with licensees furnishing insurance policies as proof of...

Code of Federal Regulations, 2010 CFR

2010-01-01

... Commission. 2.(a) For facilities designed for producing substantial amounts of electricity and having a rated... nuclear occurrence or series of occurrences at the location or in the course of transportation causing... radioactive material. (b) Any occurrence including an extraordinary nuclear occurrence or series of...

Antenna structures and cloud-to-ground lightning location: 1995-2015

NASA Astrophysics Data System (ADS)

Kingfield, Darrel M.; Calhoun, Kristin M.; de Beurs, Kirsten M.

2017-05-01

Spatial analyses of cloud-to-ground (CG) lightning occurrence due to a rapid expansion in the number of antenna towers across the United States are explored by gridding 20 years of National Lightning Detection Network data at 500 m spatial resolution. The 99.8% of grid cells with ≥100 CGs were within 1 km of an antenna tower registered with the Federal Communications Commission. Tower height is positively correlated with CG occurrence; towers taller than 400 m above ground level experience a median increase of 150% in CG lightning density compared to a region 2 km to 5 km away. In the northern Great Plains, the cumulative CG lightning density near the tower was around 138% (117%) higher than a region 2 to 5 km away in the September-February (March-August) months. Higher CG frequencies typically also occur in the first full year following new tower construction, creating new lightning hot spots.

Occurrence of Staphylococcus aureus in raw milk produced in dairy farms in São Paulo state, Brazil

PubMed Central

Fagundes, Helena; Barchesi, Luciana; Filho, Antonio Nader; Ferreira, Luciano Menezes; Oliveira, Carlos Augusto Fernandes

2010-01-01

The objective of the present study was to evaluate the occurrence of Staphylococcus aureus in milk produced in 37 farms located in the regions of Ribeirão Preto and São Carlos, state of São Paulo, Brazil. Two-hundred and eight samples of milk from individual cows showing subclinical mastitis, and 37 samples of bulk tank milk were analyzed. S. aureus strains were detected in 18 (7.3%) milk samples: 14 (6.7%) from samples of individual cows, and 4 (10.8%) from bulk tank milk. Two individual milk samples (14.3%) and two bulk milk samples contained enterotoxigenic S. aureus. PFGE analysis revealed the genetic heterogeneity of the strains isolated from raw milk, which presented to 13 S. aureus patterns. Results confirmed the potential transmission of staphylococcal food poisoning to consumers via milk of cows affected by subclinical mastitis, mainly when raw milk is ingested. PMID:24031507

Spatial and temporal variation in microcystins occurrence in wadeable streams in the southeastern USA

USGS Publications Warehouse

Loftin, Keith A.; Clark, Jimmy M.; Journey, Celeste A.; Kolpin, Dana W.; Van Metre, Peter C.; Bradley, Paul M.

2016-01-01

Despite historical observations of potential microcystin-producing cyanobacteria (including Leptolyngbya,Phormidium, Pseudoanabaena, and Anabaena species) in 74% of headwater streams in Alabama, Georgia, South Carolina, and North Carolina (USA) from 1993 to 2011, fluvial cyanotoxin occurrence has not been systematically assessed in the southeastern United States. To begin to address this data gap, a spatial reconnaissance of fluvial microcystin concentrations was conducted in 75 wadeable streams in the Piedmont region (southeastern USA) during June 2014. Microcystins were detected using enzyme-linked immunosorbent assay (limit = 0.10 µg/L) in 39% of the streams with mean, median, and maximum detected concentrations of 0.29 µg/L, 0.11 µg/L, and 3.2 µg/L, respectively. Significant (α = 0.05) correlations were observed between June 2014 microcystin concentrations and stream flow, total nitrogen to total phosphorus ratio, and water temperature; but each of these factors explained 38% or less of the variability in fluvial microcystins across the region. Temporal microcystin variability was assessed monthly through October 2014 in 5 of the streams where microcystins were observed in June and in 1 reference location; microcystins were repeatedly detected in all but the reference stream. Although microcystin concentrations in the present study did not exceed World Health Organization recreational guidance thresholds, their widespread occurrence demonstrates the need for further investigation of possible in-stream environmental health effects as well as potential impacts on downstream lakes and reservoirs. Environ Toxicol Chem 2016;9999:1–7. Published 2016 Wiley Periodicals Inc. on behalf of SETAC. This article is a US Government work and, as such, is in the public domain in the United States of America.

Occurrence and geodatabase mapping of three contaminants of emerging concern in receiving water and at effluent from waste water treatment plants - A first overview of the situation in the Republic of Ireland.

PubMed

Tahar, Alexandre; Tiedeken, Erin Jo; Rowan, Neil J

2018-03-01

This constitutes the first study to address occurrence and geodatabase mapping of the anti-inflammatory drug diclofenac (DCL) and the natural (17-beta-estradiol or E2) and synthetic (17-alpha-ethynylestradiol or EE2) estrogenic hormones in Republic of Ireland receiving waters over the period 1999 to 2015. Among these data, 317 samples came from concentration studies, while 205 were from effect-based studies. Monitoring data came from 16 waste water treatment plants (WWTPs), 23 water bodies (including rivers, lakes, marine and transitional waters) and 7 from domestic locations. Out of approximately 1000 WWPTs in the Republic of Ireland, only 16 have been monitored for at least one of these compounds of emerging concern (CECs). Diclofenac is found in treated effluents from 5 WWTPs at levels at least as high as other European WWPTs, and sometime higher. Measurements of E2 and EE2 in WWPT effluents were rare and effluents were more often evaluated for total estrogens; these CECs were generally not detected using conventional analytical methods because of limits of detection being too high compared to environmental concentrations and WFD environmental quality standards. There was good agreement between occurrence of these CEC and regional drug dispensing data in Ireland. Mapping the aforementioned data onto appropriate river basin catchment management tools will inform predictive and simulated risk determinations to inform investment in infrastructure that is necessary to protect rivers and beaches and economic activities that rely on clean water. There is a pressing commensurate need to refine/develop new analytical methods with low levels of detection for future CEC intervention. Copyright © 2017 Elsevier B.V. All rights reserved.

Herbicides and their transformation products in source-water aquifers tapped by public-supply wells in Illinois, 2001-02

USGS Publications Warehouse

Mills, Patrick C.; McMillan, William D.

2004-01-01

During 2001-02, ground-water samples were collected from 117 public-supply wells distributed throughout Illinois to evaluate the occurrence of herbicides and their transformation products in the State?s source-water aquifers. Wells were selected using a stratified-random method to ensure representation of the major types of source-water aquifers in the State. Samples were analyzed for 18 herbicides and 18 transformation products, including 3 triazine and 14 chloroacetanilide products. Herbicide compounds (field-applied parent herbicides and their transformation products) were detected in 34 percent of samples. A subset of samples was collected unfiltered to determine if analytical results for herbicides in unfiltered samples are similar to those in paired filtered samples and, thus, can be considered equally representative of herbicide concentrations in ground water supplied to the public. The study by the U.S. Geological Survey was done in cooperation with the Illinois Environmental Protection Agency. Parent herbicides were detected in only 4 percent of all samples. The six most frequently detected herbicide compounds (from 5 to 28 percent of samples) were chloroacetanilide transformation products. The frequent occurrence of transformation products and their higher concentrations relative to those of most parent herbicides confirm the importance of obtaining information on transformation products to understand the mobility and fate of herbicides in ground-water systems. No sample concentrations determined during this study exceeded current (2003) Federal or State drinking-water standards; however, standards are established for only seven parent herbicides. Factors related to the occurrence of herbicide compounds in the State?s source-water aquifers include unconsolidated and unconfined conditions, various hydrogeologic characteristics and well-construction aspects at shallow depths, and proximity to streams. Generally, the closer an aquifer (or well location) is to a recharge area and (or) the stronger the hydraulic connection between an aquifer and a recharge area, the younger the ground water and the more vulnerable the aquifer will be to contamination by herbicide compounds. The weak relation between current (2001) statewide application rates of herbicides and current (2001-02) occurrence of herbicide compounds in source-water aquifers indicates that additional factors must be considered when relating herbicide-application rates to occurrence. These factors include historical application rates and the mobility and persistence of the various herbicide compounds in ground-water systems. Frequency of detection and concentrations of herbicides compounds in the State?s source-water aquifers are indicated to be highest during the spring, when crops are planted and herbicides primarily are applied. Excess nitrate (concentrations of nitrate, as nitrogen, higher than 3 milligrams per liter) in ground water strongly indicates the co-occurrence of herbicide compounds. However, nitrate concentrations are not a reliable indicator of herbicide-compound concentrations. The inverse relation found between current use of land for corn and soybean production and current occurrence of herbicide compounds in underlying aquifers indicates that various factors, along with current agricultural land use, contribute to herbicide occurrence. These factors include, among others, land-use history, ground-water age, ground-water-flow patterns, geology, soil microbiology, and chemistry and persistence of the herbicide compounds. Detection of agriculture-specific herbicide compounds in 71 percent of samples from urban areas with no current or recent agricultural land use near the sampled wells indicates that recharge to certain high-capacity supply wells may originate at considerable distances (up to about 10 miles) from the wells. Essentially no difference was found between the analytical results for herbicides in paired unfiltered and filtered samples,

Occurrence of naproxen, ibuprofen, and diclofenac residues in wastewater and river water of KwaZulu-Natal Province in South Africa.

PubMed

Madikizela, Lawrence Mzukisi; Chimuka, Luke

2017-07-01

The present paper reports a detailed study that is based on the monitoring of naproxen, ibuprofen, and diclofenac in Mbokodweni River and wastewater treatment plants (WWTPs) located around the city of Durban in KwaZulu-Natal Province of South Africa. Target compounds were extracted from water samples using a multi-template molecularly imprinted solid-phase extraction prior to separation and quantification on a high-performance liquid chromatography equipped with photo diode array detector. The analytical method yielded the detection limits of 0.15, 1.00, and 0.63 μg/L for naproxen, ibuprofen, and diclofenac, respectively. Solid-phase extraction method was evaluated for its performance using deionized water samples that were spiked with 5 and 50 μg/L of target compounds. Recoveries were greater than 80% for all target compounds with RSD values in the range of 4.1 to 10%. Target compounds were detected in most wastewater and river water samples with ibuprofen being the most frequently detected pharmaceutical. Maximum concentrations detected in river water for naproxen, ibuprofen, and diclofenac were 6.84, 19.2, and 9.69 μg/L, respectively. The concentrations of target compounds found in effluent and river water samples compared well with some studies. The analytical method employed in this work is fast, selective, sensitive, and affordable; therefore, it can be used routinely to evaluate the occurrence of acidic pharmaceuticals in South African water resources.

Evaluating the fate of chlorinated ethenes in streambed sediments by combining stable isotope, geochemical and microbial methods

NASA Astrophysics Data System (ADS)

Abe, Yumiko; Aravena, Ramon; Zopfi, Jakob; Parker, Beth; Hunkeler, Daniel

2009-06-01

The occurrence of chlorinated ethene transformation in a streambed was investigated using concentration and carbon isotope data from water samples taken at different locations and depths within a 15 × 25 m study area across which a tetrachloroethene (PCE) plume discharges. Furthermore, it was evaluated how the degree of transformation is related to groundwater discharge rates, redox conditions, solid organic matter content (SOM) and microbial factors. Groundwater discharge rates were quantified based on streambed temperatures, and redox conditions using concentrations of dissolved redox-sensitive species. The degree of chlorinated ethene transformation was highly variable in space from no transformation to transformation beyond ethene. Complete reductive dechlorination to ethane and ethene occurred at locations with at least sulfate-reducing conditions and with a residence time in the samples streambed zone (80 cm depth) of at least 10 days. Among these locations, Dehalococcoides was detected using a PCR method where SOM contents were > 2% w/w and where transformation proceeded beyond ethene. However, it was not detected at locations with low SOM, which may cause an insufficient H 2 supply to sustain a detectably dense Dehalococcoides population. Additionally, it is possible that other organisms are responsible for the biodegradation. A microcosm study with streambed sediments demonstrated the potential of VC oxidation throughout the site even at locations without a pre-exposure to VC, consistent with the detection of the epoxyalkane:coenzyme M transferase (EaCoMT) gene involved in the degradation of chlorinated ethenes via epoxidation. In contrast, no aerobic transformation of cDCE in microcosms over a period of 1.5 years was observed. In summary, the study demonstrated that carbon isotope analysis is a sensitive tool to identify the degree of chlorinated ethene transformation even in hydrologically and geochemically complex streambed systems. In addition, it was observed that the degree of transformation is related to redox conditions, which in turn depend on groundwater discharge rates.

Occurrence and status of volatile organic compounds in ground water from rural, untreated, self-supplied domestic wells in the United States, 1986-99

USGS Publications Warehouse

Moran, Michael J.; Lapham, Wayne W.; Rowe, Barbara L.; Zogorski, John S.

2002-01-01

Samples of untreated ground water from 1,926 rural, self-supplied domestic wells were analyzed for volatile organic compounds (VOCs) during 1986-99. This information was used to characterize the occurrence and status of VOCs in domestic well water. The samples were either collected as part of the U.S. Geological Survey?s National Water-Quality Assessment (NAWQA) Program occurrence-assessment studies or were compiled by NAWQA from existing ambient ground-water or source-water-quality monitoring programs conducted by local, State, and other Federal agencies. Water samples were collected at the wellhead prior to treatment or storage. In most samples, 55 target VOCs were analyzed, and occurrence and status information generally was computed at an assessment level of 0.2 mg/L (microgram per liter). At least one VOC was detected in 12 percent of samples (232 samples) at an assessment level of 0.2 mg/L. This detection frequency is relatively low compared to the 26 percent detection frequency of at least one VOC in public sup-ply wells sampled by NAWQA, and the difference may be due, in part, to the higher pumping rates, pumping stress factors, and larger contributing areas of public supply wells. Samples with detections of at least one VOC were collected from wells located in 31 of 39 States. Solvents were the most frequently detected VOC group with detections in 4.6 percent of samples (89 samples) at an assessment level of 0.2 mg/L. The geographic distribution of detections of some VOC groups, such as fumigants and oxygenates, relates to the use pattern of com-pounds in that group. With the exception of com-pounds used in organic synthesis, detection frequencies of VOCs by group are proportional to the average half-life of compounds in the group. When the organic synthesis group is excluded from the analysis, a good correlation exists between the detection frequency of VOCs by group and average half-life of compounds in the group. Individually, VOCs were not commonly detected at an assessment level of 0.2 mg/L, with the seven most frequently detected VOCs found in only 1 to 5 percent of samples. Mixtures (two or more compounds) were a common mode of occurrence for VOCs when no assessment level was applied, and mixtures occurred in one-half of all samples that contained at least one VOC. Only 1.4 percent of samples (27 samples) had one or more VOC concentrations that exceeded a federally established drinking-water standard or health criterion. Only 0.1 percent of samples (2 samples) had one or more VOC concentrations that exceeded a taste/odor threshold. Potential point sources of VOCs near domestic wells are numerous. Leaks from under-ground storage tanks and aboveground storage tanks that hold gasoline, diesel fuel, or heating oil have the potential to be major point sources of contaminants to domestic wells. Shock chlorination may be a source of trichloromethane and other trihalomethanes in some domestic wells. Septic systems are believed to be an important source of contaminants to domestic wells, but extensive research on this subject does not exist. VOCs frequently are ingredients in household products such as cleansers and insecticides, and some VOCs have been found in septic systems.

Accounting for imperfect detection and survey bias in statistical analysis of presence-only data

USGS Publications Warehouse

Dorazio, Robert M.

2014-01-01

Using mathematical proof and simulation-based comparisons, I demonstrate that biases induced by errors in detection or biased selection of survey locations can be reduced or eliminated by using the hierarchical model to analyse presence-only data in conjunction with counts observed in planned surveys. I show that a relatively small number of high-quality data (from planned surveys) can be used to leverage the information in presence-only observations, which usually have broad spatial coverage but may not be informative of both occurrence and detectability of individuals. Because a variety of sampling protocols can be used in planned surveys, this approach to the analysis of presence-only data is widely applicable. In addition, since the point-process model is formulated at the level of an individual, it can be extended to account for biological interactions between individuals and temporal changes in their spatial distributions.

Development and evaluation of a culture-independent method for source determination of fecal wastes in surface and storm waters using reverse transcriptase-PCR detection of FRNA coliphage genogroup gene sequences.

PubMed

Paar, Jack; Doolittle, Mark M; Varma, Manju; Siefring, Shawn; Oshima, Kevin; Haugland, Richard A

2015-05-01

A method, incorporating recently improved reverse transcriptase-PCR primer/probe assays and including controls for detecting interferences in RNA recovery and analysis, was developed for the direct, culture-independent detection of genetic markers from FRNA coliphage genogroups I, II & IV in water samples. Results were obtained from an initial evaluation of the performance of this method in analyses of waste water, ambient surface water and stormwater drain and outfall samples from predominantly urban locations. The evaluation also included a comparison of the occurrence of the FRNA genetic markers with genetic markers from general and human-related bacterial fecal indicators determined by current or pending EPA-validated qPCR methods. Strong associations were observed between the occurrence of the putatively human related FRNA genogroup II marker and the densities of the bacterial markers in the stormwater drain and outfall samples. However fewer samples were positive for FRNA coliphage compared to either the general bacterial fecal indicator or the human-related bacterial fecal indicator markers particularly for ambient water samples. Together, these methods show promise as complementary tools for the identification of contaminated storm water drainage systems as well as the determination of human and non-human sources of contamination. Published by Elsevier B.V.

Pharmaceutical contamination in residential, industrial, and agricultural waste streams: risk to aqueous environments in Taiwan.

PubMed

Lin, Angela Yu-Chen; Yu, Tsung-Hsien; Lin, Cheng-Fang

2008-12-01

This is a comprehensive study of the occurrence of antibiotics, hormones and other pharmaceuticals in water sites that have major potential for downstream environmental contamination. These include residential (hospitals, sewage treatment plants, and regional discharges), industrial (pharmaceutical production facilities), and agricultural (animal husbandries and aquacultures) waste streams. We assayed 23 Taiwanese water sites for 97 targeted compounds, of which a significant number were detected and quantified. The most frequently detected compounds were sulfamethoxazole, caffeine, acetaminophen, and ibuprofen, followed closely by cephalexin, ofloxacin, and diclofenac, which were detected in >91% of samples and found to have median (maximum) concentrations of 0.2 (5.8), 0.39 (24.0), 0.02 (100.4), 0.41 (14.5), 0.15 (31.4), 0.14 (13.6) and 0.083 (29.8) microg/L, respectively. Lincomycin and acetaminophen had high measured concentrations (>100 microg/L), and 35 other pharmaceuticals occurred at the microg/L level. These incidence and concentration results correlate well with published data for other worldwide locations, as well as with Taiwanese medication usage data, suggesting a human contamination source. Many pharmaceuticals also occurred at levels exceeding predicted no-effect concentrations (PNEC), warranting further investigation of their occurrence and fate in receiving waters, as well as the overall risks they pose for local ecosystems and human residents. The information provided here will also be useful for development of strategies for regulation and remediation.

Analyzing the continuous volcanic tremors detected during the 2015 phreatic eruption of the Hakone volcano

NASA Astrophysics Data System (ADS)

Yukutake, Yohei; Honda, Ryou; Harada, Masatake; Doke, Ryosuke; Saito, Tatsuhiko; Ueno, Tomotake; Sakai, Shin'ichi; Morita, Yuichi

2017-12-01

In the present study, we analyze the seismic signals from a continuous volcanic tremor that occurred during a small phreatic eruption of the Hakone volcano, in the Owakudani geothermal region of central Japan, on June 29, 2015. The signals were detected for 2 days, from June 29 to July 1, at stations near the vents. The frequency component of the volcanic tremors showed a broad peak within 1-6 Hz. The characteristics of the frequency component did not vary with time and were independent of the amplitude of the tremor. The largest amplitude was observed at the end of the tremor activity, 2 days after the onset of the eruption. We estimated the location of the source using a cross-correlation analysis of waveform envelopes. The locations of volcanic tremors are determined near the vents of eruption and the surface, with the area of the upper extent of an open crack estimated using changes in the tilt. The duration-amplitude distribution of the volcanic tremor was consistent with the exponential scaling law rather than the power law, suggesting a scale-bound source process. This result suggests that the volcanic tremor originated from a similar physical process occurring practically in the same place. The increment of the tremor amplitude was coincident with the occurrence of impulsive infrasonic waves and vent formations. High-amplitude seismic phases were observed prior to the infrasonic onsets. The time difference between the seismic and infrasonic onsets can be explained assuming a common source located at the vent. This result suggests that both seismic and infrasonic waves are generated when a gas slug bursts at that location. The frequency components of the seismic phases observed just before the infrasonic onset were generally consistent with those of the tremor signals without infrasonic waves. The burst of a gas slug at the surface vent may be a reasonable model for the generation mechanism of the volcanic tremor and the occurrence of impulsive infrasonic signals.[Figure not available: see fulltext.

Anuran site occupancy and species richness as tools for evaluating restoration of a hydrologically-modified landscape

USGS Publications Warehouse

Walls, Susan; Waddle, J. Hardin; Barichivich, William J.; Bartoszek, Ian A.; Brown, Mary E.; Hefner, J. M.; Schuman, Melinda J.

2014-01-01

A fundamental goal of wetland restoration is to reinstate pre-disturbance hydrological conditions to degraded landscapes, facilitating recolonization by native species and the production of resilient, functional ecosystems. To evaluate restoration success, baseline conditions need to be determined and a reference target needs to be established that will serve as an ecological blueprint in the restoration process. During the summer wet seasons of 2010 and 2011, we used automated recording units to monitor a community of calling anuran amphibians in the Picayune Strand State Forest of Southwest Florida, USA. This area is undergoing hydrological restoration as part of the Comprehensive Everglades Restoration Plan. We compared occurrence of anurans at sites in the restoration area, to nearby locations in relatively undisturbed habitat (reference sites). We assessed the utility of the latter as restoration targets, using a hierarchical model of community species occupancy to estimate the probability of occurrence of anurans in restoration and reference locations. We detected 14 species, 13 of which were significantly more likely to occur in reference areas. All 14 species were estimated by our model to occur at these sites but, across both years, only 8–13 species were estimated to occur at restoration sites. The composition and structure of these habitats within and adjacent to the Picayune Strand State Forest indicate that they are suitable targets for habitat restoration, as measured by amphibian occurrence and species richness. These areas are important sources for recolonization of anuran amphibians as the hydrologically degraded Picayune Strand undergoes restoration to mitigate the effects of overdrainage and habitat loss.

Human virus and microbial indicator occurrence in public-supply groundwater systems: meta-analysis of 12 international studies

NASA Astrophysics Data System (ADS)

Fout, G. Shay; Borchardt, Mark A.; Kieke, Burney A.; Karim, Mohammad R.

2017-06-01

Groundwater quality is often evaluated using microbial indicators. This study examines data from 12 international groundwater studies (conducted 1992-2013) of 718 public drinking-water systems located in a range of hydrogeological settings. Focus was on testing the value of indicator organisms for identifying virus-contaminated wells. One or more indicators and viruses were present in 37 and 15% of 2,273 samples and 44 and 27% of 746 wells, respectively. Escherichia coli ( E. coli) and somatic coliphage are 7-9 times more likely to be associated with culturable virus-positive samples when the indicator is present versus when it is absent, while F-specific and somatic coliphages are 8-9 times more likely to be associated with culturable virus-positive wells. However, single indicators are only marginally associated with viruses detected by molecular methods, and all microbial indicators have low sensitivity and positive predictive values for virus occurrence, whether by culturable or molecular assays, i.e., indicators are often absent when viruses are present and the indicators have a high false-positive rate. Wells were divided into three susceptibility subsets based on presence of (1) total coliform bacteria or (2) multiple indicators, or (3) location of wells in karst, fractured bedrock, or gravel/cobble settings. Better associations of some indicators with viruses were observed for (1) and (3). Findings indicate the best indicators are E. coli or somatic coliphage, although both indicators may underestimate virus occurrence. Repeat sampling for indicators improves evaluation of the potential for viral contamination in a well.

Relations Among the Use, Occurrence, and Flux of Azoxystrobin, Propiconazole, and Other Fungicides in US Streams, 2005-06

NASA Astrophysics Data System (ADS)

Battaglin, W. A.; Sandstrom, M. W.

2007-05-01

Fungicides account for 10 percent of global pesticide use (0.25 million metric tons per year), and 6 percent of US use (33 thousand metric tons per year). Some fungicides such as chlorothalonil have been in use for decades (first US registration in 1966), while others such as azoxystrobin were introduced in the last decade (first US sales in 1996). Fungicide fate and transport is not well understood, but recent investigations have detected fungicides in precipitation, groundwater, streams, and streambed sediment. The occurrence of Asian soybean rust in the Southern US is of concern because of the increase in fungicide use that would result if it spreads to the Central US during the growing season. In the Central US many growers have never used fungicides to protect soybeans. The purpose of this study is to collect baseline data on fungicide occurrence in streams prior to the spread of Asian rust to soybeans in the Central US and the anticipated increase in fungicide use to control the rust. These data are then used to investigate relations among the occurrence and flux of fungicides in US streams, and the use of those products within the associated drainage basins. Water samples from streams in the Southern and Central US were collected in 2005 (26 sites, 40 samples) and 2006 (16 sites, 41 samples), and analyzed for up to 11 fungicides. This is the first study to monitor for several of these fungicides in environmental samples from locations in this region of the US. Chlorothalonil was used in all study basins but only detected in one sample from 2006. Azoxystrobin was detected in one or more samples from 12 of 26 sites in 2005 and 10 of 16 sites in 2006. Estimated daily fluxes of azoxystrobin ranged from zero to 440 grams/day but were not significantly correlated (p value = 0.3) with estimated azoxystrobin use in the upstream watershed. Estimated daily fluxes of propiconizole ranged from zero to 360 grams/day and were correlated (p value = <0.0001) with estimated propiconizole use. Results indicate that fungicides can readily enter aquatic systems where they may have toxic effects, and that their occurrence and flux in streams may be correlated with regional patterns of fungicide use.

Monitoring of Thermal Protection Systems Using Robust Self-Organizing Optical Fiber Sensing Networks

NASA Technical Reports Server (NTRS)

Richards, Lance

2013-01-01

The general aim of this work is to develop and demonstrate a prototype structural health monitoring system for thermal protection systems that incorporates piezoelectric acoustic emission (AE) sensors to detect the occurrence and location of damaging impacts, and an optical fiber Bragg grating (FBG) sensor network to evaluate the effect of detected damage on the thermal conductivity of the TPS material. Following detection of an impact, the TPS would be exposed to a heat source, possibly the sun, and the temperature distribution on the inner surface in the vicinity of the impact measured by the FBG network. A similar procedure could also be carried out as a screening test immediately prior to re-entry. The implications of any detected anomalies in the measured temperature distribution will be evaluated for their significance in relation to the performance of the TPS during re-entry. Such a robust TPS health monitoring system would ensure overall crew safety throughout the mission, especially during reentry

An iterative and targeted sampling design informed by habitat suitability models for detecting focal plant species over extensive areas.

PubMed

Wang, Ophelia; Zachmann, Luke J; Sesnie, Steven E; Olsson, Aaryn D; Dickson, Brett G

2014-01-01

Prioritizing areas for management of non-native invasive plants is critical, as invasive plants can negatively impact plant community structure. Extensive and multi-jurisdictional inventories are essential to prioritize actions aimed at mitigating the impact of invasions and changes in disturbance regimes. However, previous work devoted little effort to devising sampling methods sufficient to assess the scope of multi-jurisdictional invasion over extensive areas. Here we describe a large-scale sampling design that used species occurrence data, habitat suitability models, and iterative and targeted sampling efforts to sample five species and satisfy two key management objectives: 1) detecting non-native invasive plants across previously unsampled gradients, and 2) characterizing the distribution of non-native invasive plants at landscape to regional scales. Habitat suitability models of five species were based on occurrence records and predictor variables derived from topography, precipitation, and remotely sensed data. We stratified and established field sampling locations according to predicted habitat suitability and phenological, substrate, and logistical constraints. Across previously unvisited areas, we detected at least one of our focal species on 77% of plots. In turn, we used detections from 2011 to improve habitat suitability models and sampling efforts in 2012, as well as additional spatial constraints to increase detections. These modifications resulted in a 96% detection rate at plots. The range of habitat suitability values that identified highly and less suitable habitats and their environmental conditions corresponded to field detections with mixed levels of agreement. Our study demonstrated that an iterative and targeted sampling framework can address sampling bias, reduce time costs, and increase detections. Other studies can extend the sampling framework to develop methods in other ecosystems to provide detection data. The sampling methods implemented here provide a meaningful tool when understanding the potential distribution and habitat of species over multi-jurisdictional and extensive areas is needed for achieving management objectives.

An Iterative and Targeted Sampling Design Informed by Habitat Suitability Models for Detecting Focal Plant Species over Extensive Areas

PubMed Central

Wang, Ophelia; Zachmann, Luke J.; Sesnie, Steven E.; Olsson, Aaryn D.; Dickson, Brett G.

2014-01-01

Prioritizing areas for management of non-native invasive plants is critical, as invasive plants can negatively impact plant community structure. Extensive and multi-jurisdictional inventories are essential to prioritize actions aimed at mitigating the impact of invasions and changes in disturbance regimes. However, previous work devoted little effort to devising sampling methods sufficient to assess the scope of multi-jurisdictional invasion over extensive areas. Here we describe a large-scale sampling design that used species occurrence data, habitat suitability models, and iterative and targeted sampling efforts to sample five species and satisfy two key management objectives: 1) detecting non-native invasive plants across previously unsampled gradients, and 2) characterizing the distribution of non-native invasive plants at landscape to regional scales. Habitat suitability models of five species were based on occurrence records and predictor variables derived from topography, precipitation, and remotely sensed data. We stratified and established field sampling locations according to predicted habitat suitability and phenological, substrate, and logistical constraints. Across previously unvisited areas, we detected at least one of our focal species on 77% of plots. In turn, we used detections from 2011 to improve habitat suitability models and sampling efforts in 2012, as well as additional spatial constraints to increase detections. These modifications resulted in a 96% detection rate at plots. The range of habitat suitability values that identified highly and less suitable habitats and their environmental conditions corresponded to field detections with mixed levels of agreement. Our study demonstrated that an iterative and targeted sampling framework can address sampling bias, reduce time costs, and increase detections. Other studies can extend the sampling framework to develop methods in other ecosystems to provide detection data. The sampling methods implemented here provide a meaningful tool when understanding the potential distribution and habitat of species over multi-jurisdictional and extensive areas is needed for achieving management objectives. PMID:25019621

Occurrence and temporal variability of methyl tert-butyl ether (MTBE) and other volatile organic compounds in select sources of drinking water : results of the focused survey

USGS Publications Warehouse

Delzer, Gregory C.; Ivahnenko, Tamara

2003-01-01

The large-scale use of the gasoline oxygenate methyl tert-butyl ether (MTBE), and its high solubility, low soil adsorption, and low biodegradability, has resulted in its detection in ground water and surface water in many places throughout the United States. Studies by numerous researchers, as well as many State and local environmental agencies, have discovered high levels of MTBE in soils and ground water at leaking underground gasoline-storage-tank sites and frequent occurrence of low to intermediate levels of MTBE in reservoirs used for both public water supply and recreational boating.In response to these findings, the American Water Works Association Research Foundation sponsored an investigation of MTBE and other volatile organic compounds (VOCs) in the Nation's sources of drinking water. The goal of the investigation was to provide additional information on the frequency of occurrence, concentration, and temporal variability of MTBE and other VOCs in source water used by community water systems (CWSs). The investigation was completed in two stages: (1) reviews of available literature and (2) the collection of new data. Two surveys were associated with the collection of new data. The first, termed the Random Survey, employed a statistically stratified design for sampling source water from 954 randomly selected CWSs. The second, which is the focus of this report, is termed the Focused Survey, which included samples collected from 134 CWS source waters, including ground water, reservoirs, lakes, rivers, and streams, that were suspected or known to contain MTBE. The general intent of the Focused Survey was to compare results with the Random Survey and provide an improved understanding of the occurrence, concentration, temporal variability, and anthropogenic factors associated with frequently detected VOCs. Each sample collected was analyzed for 66 VOCs, including MTBE and three other ether gasoline oxygenates (hereafter termed gasoline oxygenates). As part of the Focused Survey, 451 source-water samples and 744 field quality-control (QC) samples were collected from 78 ground-water, 39 reservoir and (or) lake, and 17 river and (or) stream source waters at fixed intervals for a period of 1 year.Using a common assessment level of 0.2 μg/L (micrograms per liter) (2.0 μg/L for methyl ethyl ketone), 37 of the 66 VOCs analyzed were detected in both surveys. However, VOCs, especially MTBE and other gasoline oxygenates, were detected more frequently in the Focused Survey than in the Random Survey. MTBE was detected in 55.5 percent of the CWSs sampled in the Focused Survey and in 8.7 percent of those sampled in the Random Survey. Little difference in occurrence, however, was observed for trihalomethanes (THMs), which were detected in 16.4 and 14.8 percent of Focused Survey and Random Survey CWSs, respectively. This may indicate a pervasive occurrence of THMs in several source-water types, regardless of CWS size or geographic location.Using data at or above the method detection limit to assess temporal variability and anthropogenic factors associated with frequent detection of select VOCs, concentrations in the Focused Survey in ground-water, reservoir, and river source waters were typically less than 1 μg/L. Also, at a 95-percent confidence interval, no statistically significant differences were observed in comparing concentrations in the first and second ground-water sample. A weak seasonal pattern was observed in samples collected from reservoirs and lakes where gasoline oxygenates and other gasoline compounds were detected more frequently during spring and summer, presumedly a result of increased use of motorized watercraft during these seasons. In contrast, seasonal patterns were not observed in samples collected from rivers and streams. The lack of seasonal differences in river and stream source waters sampled may indicate a common and continuous source of contamination.The most frequently detected VOC (MTBE) and the two most frequently occurring subgroups of VOCs (gasoline oxygenates and THMs) detected in CWS source waters were further characterized to evaluate some anthropogenic factors that may better explain their frequent occurrence. Gasoline oxygenates were detected in 73.9 percent of all CWSs sampled. The concentration of gasoline oxygenates was slightly correlated with watercraft use on reservoirs inside MTBE high-use areas (r2=0.3783) but not outside of these areas (r2=0.0242). In general, the concentration of gasoline oxygenates increased as watercraft use increased. THMs were detected in 47.8 percent of the CWSs supplied by surface water. The frequent occurrence of THMs in reservoir source waters was determined to be an artifact of disinfection and the recycling of chlorinated water to these reservoirs. All CWSs with frequent occurrence of THMs served by a reservoir indicated that chlorine was added to waters for various reasons and that the chlorinated water was then released back to,or upstream of, the reservoir or lake that was sampled.

Occurrence of perfluoroalkyl sulfonates and carboxylates in German drinking water sources compared to other countries.

PubMed

Lange, F T; Wenz, M; Schmidt, C K; Brauch, H-J

2007-01-01

Different homologues of C4 to C8 perfluoroalkyl carboxylates (PFCAs) and perfluoroalkyl sulfonates (PFASs) were detected in German surface waters, bank filtrates, artificially recharged groundwaters, and drinking waters. If no point sources are located nearby, the typically measured levels are in the low ng/L range. In the presence of point sources, such as a fluorochemical production site, a leaching agricultural fertilizer contaminated with PFCAs and PFASs, or drained PFC containing fire-fighting foams, much higher concentrations in the microg/L range occur. This situation is similar in Germany and other countries.

Low-power triggered data acquisition system and method

NASA Technical Reports Server (NTRS)

Champaigne, Kevin (Inventor); Sumners, Jonathan (Inventor)

2012-01-01

A low-power triggered data acquisition system and method utilizes low-powered circuitry, comparators, and digital logic incorporated into a miniaturized device interfaced with self-generating transducer sensor inputs to detect, identify and assess impact and damage to surfaces and structures wherein, upon the occurrence of a triggering event that produces a signal greater than a set threshold changes the comparator output and causes the system to acquire and store digital data representative of the incoming waveform on at least one triggered channel. The sensors may be disposed in an array to provide triangulation and location of the impact.

Pharmaceuticals, hormones, pesticides, and other bioactive contaminants in water, sediment, and tissue from Rocky Mountain National Park, 2012–2013

USGS Publications Warehouse

Battaglin, William A.; Bradley, Paul M.; Iwanowicz, Luke R.; Journey, Celeste A.; Walsh, Heather L.; Blazer, Vicki S.

2018-01-01

Pharmaceuticals, hormones, pesticides, and other bioactive contaminants (BCs) are commonly detected in surface water and bed sediment in urban and suburban areas, but these contaminants are understudied in remote locations. In Rocky Mountain National Park (RMNP), Colorado, USA, BCs may threaten the reproductive success and survival of native aquatic species, benthic communities, and pelagic food webs. In 2012–2013, 67 water, 57 sediment, 63 fish, 10 frog, and 12 quality-control samples (8 water and 4 sediment) were collected from 20 sites in RMNP. Samples were analyzed for 369 parameters including 149 pharmaceuticals, 22 hormones, 137 pesticides, and 61 other chemicals or conditions to provide a representative assessment of BC occurrence within RMNP. Results indicate that BCs were detected in water and/or sediment from both remote and more accessible locations in RMNP. The most commonly detected BCs in water were caffeine, camphor, para-cresol, and DEET; and the most commonly detected BCs in sediment were indole, 3-methyl-1H-indole, para-cresol, and 2,6-dimethyl-naphthalene. Some detected contaminants, including carbaryl, caffeine, and oxycodone, are clearly attributable to direct local human input, whereas others may be transported into the park atmospherically (e.g., atrazine) or have local natural sources (e.g., para-cresol). One or more pharmaceuticals were detected in at least 1 sample from 15 of 20 sites. Most of the 29 detected pharmaceuticals are excreted primarily in human urine, not feces. Elevated net estrogenicity was observed in 18% of water samples, and elevated vitellogenin in blood was observed in 12% of male trout, both evidence of potential endocrine disruption. Hormone concentrations in sediment tended to be greater than concentrations in water. Most BCs were observed at concentrations below those not expected to pose adverse effects to aquatic life. Results indicate that even in remote locations aquatic wildlife can be exposed to pharmaceuticals, hormones, pesticides, and other bioactive contaminants.

Greater sage-grouse: General use and roost site occurrence with pellet counts as a measure of relative abundance: Chapter 5

USGS Publications Warehouse

2011-01-01

Greater sage-grouse (Centrocercus urophasianus) have been declining both spatially and numerically throughout their range because of anthropogenic disturbance and loss and fragmentation of sagebrush (Artemisia spp.) habitats. Understanding how sage-grouse respond to these habitat alterations and disturbances, particularly the types of disturbances and extent at which they respond, is critical to designing management actions and prioritizing areas of conservation. To address these needs, we developed statistical models of the relationships between occurrence and abundance of greater sage-grouse and multi-scaled measures of vegetation, abiotic, and disturbance in the Wyoming Basins Ecoregional Assessment (WBEA) area. Sage-grouse occurrence was strongly related to the amount of sagebrush within 1 km for both roost site and general use locations. Roost sites were identified by presence of sage-grouse fecal pellet groups whereas general use locations had single pellets. Proximity to anthropogenic disturbance including energy development, power lines, and major roads was negatively associated with sage-grouse occurrence. Models of sage-grouse occurrence correctly predicted active lek locations with >75% accuracy. Our spatially explicit models identified areas of high occurrence probability in the WBEA area that can be used to delineate areas for conservation and refine existing conservation plans. These models can also facilitate identification of pathways and corridors important for maintenance of sage-grouse population connectivity.

The location and rate of occurrence of near-Earth magnetotail reconnection as observed by Cluster and Geotail

NASA Astrophysics Data System (ADS)

Genestreti, K. J.; Fuselier, S. A.; Goldstein, J.; Nagai, T.; Eastwood, J. P.

2014-12-01

A statistical characterization of the location and rate of occurrence of magnetic reconnection in the near-Earth magnetotail is performed by analyzing the set of ion diffusion region (DR) observations made by the Cluster and Geotail spacecraft during solar maximum and the declining phase. The occurrence rate is analyzed in terms of its dependence on both XGSM* and YGSM* (where coordinates are in the solar wind aberrated geocentric solar magnetospheric system). Within the limits of the statistics available to this study, we find the purely XGSM* -dependent occurrence rate to be roughly constant over a large portion of the near-Earth magnetotail. In contrast, we find the purely YGSM* -dependent occurrence rate to be biased towards dusk with a local maximum between 0RE ≤YGSM* ≤ 5RE. The YGSM* -dependent occurrence rate is then used to construct a quasi-2D formulation of the DR occurrence rate, which has explicit dependence on XGSM* and implicit dependence on YGSM*. The quasi-2D occurrence rate is then used to examine the predicted ephemeris of the Magnetospheric MultiScale (MMS) spacecraft. We estimate that, during its near-Earth magnetotail survey phase, MMS will likely observe 11±4 DR events. • The occurrence rate of events is calculated as a function of XGSM and YGSM. • The occurrence rate is used to estimate the number of events MMS will observe.

Quantitative PCR assay to determine prevalence and intensity of MSX (Haplosporidium nelsoni) in North Carolina and Rhode Island oysters Crassostrea virginica.

PubMed

Wilbur, Ami E; Ford, Susan E; Gauthier, Julie D; Gomez-Chiarri, Marta

2012-12-27

The continuing challenges to the management of both wild and cultured eastern oyster Crassostrea virginica populations resulting from protozoan parasites has stimulated interest in the development of molecular assays for their detection and quantification. For Haplosporidium nelsoni, the causative agent of multinucleated sphere unknown (MSX) disease, diagnostic evaluations depend extensively on traditional but laborious histological approaches and more recently on rapid and sensitive (but not quantitative) end-point polymerase chain reaction (PCR) assays. Here, we describe the development and application of a quantitative PCR (qPCR) assay for H. nelsoni using an Applied Biosystems TaqMan® assay designed with minor groove binder (MGB) probes. The assay was highly sensitive, detecting as few as 20 copies of cloned target DNA. Histologically evaluated parasite density was significantly correlated with the quantification cycle (Cq), regardless of whether quantification was categorical (r2 = 0.696, p < 0.0001) or quantitative (r2 = 0.797, p < 0.0001). Application in field studies conducted in North Carolina, USA (7 locations), revealed widespread occurrence of the parasite with moderate to high intensities noted in some locations. In Rhode Island, USA, application of the assay on oysters from 2 locations resulted in no positives.

Characteristics and climatology of mid-latitude F-region ionospheric irregularities observed by COSMIC radio occultation measurements

NASA Astrophysics Data System (ADS)

Watson, C.; Pedatella, N. M.

2017-12-01

Small-medium scale ( 1-50 km) ionospheric plasma irregularities are a ubiquitous feature of the earth's F region ionosphere. COSMIC radio occultation measurements provide a valuable opportunity to improve upon the incomplete global observational picture of irregularity occurrence and characteristics. A climatological database of ionospheric irregularities and their characteristics (e.g. magnitude, scale size, gradient, and associated scintillation) has been developed through detection of total electron content (TEC) perturbations by COSMIC precise orbit determination (POD) antennas and associated receivers. Vertical scale sizes ranging from 1 to 50 km were resolved from 1 Hz TEC measurements stored in podTec files. Amplitude scintillation index (S4) of ScnLv1 files was used as a proxy for the occurrence of smaller scale (<1 km) scintillation producing structures. Four years of processed data (2007-2008 and 2012-2013) has revealed interesting climatological features of irregularity occurrence and characteristics. The presentation will focus on the results at mid-latitudes. One interesting mid-latitude feature is a high occurrence of irregularities in regions corresponding to the solar terminator. Perturbations larger than 0.1 TEC units (TECU) were observed 50%-80% of the time in terminator regions, with higher occurrence and more intense perturbations around sunset and during years of high solar activity. Altitude of peak occurrence of terminator irregularities was about 150 km, with a sharp upper-altitude cut-off of 250 km. The occurrence and characteristics of these irregularities are modified according to proximity to solar terminator location. A possible link to thermospheric neutral density perturbations also associated with the solar terminator will be discussed. The climatology of non-terminator mid-latitude irregularities is consistent with previous observations of mid-latitude field-aligned irregularities (FAIs), including a local-time dependent altitude and a peak occurrence in the summer hemisphere. The characteristics of these non-terminator irregularities will also be discussed.

78 FR 64839 - Endangered and Threatened Wildlife and Plants; Endangered Status for Vandenberg Monkeyflower

Federal Register 2010, 2011, 2012, 2013, 2014

2013-10-29

... monophyletic group warranting recognition at the family rank as Phrymaceae (Beardsley and Olmstead 2002, pp... known occurrences are on the following lands: Vandenberg AFB (four occurrences), Burton Mesa Ecological... AFB There are four locations on Vandenberg AFB that are known to support occurrences of Vandenberg...

Mineral occurrences of New York State with selected references to each locality

USGS Publications Warehouse

Luedke, Elaine M.; Wrucke, Chester T.; Graham, John A.

1959-01-01

References and locations were compiled for more than 1,000 mineral occurrences in New York State. Each occurrence is shown on an accompanying map and is given by commodity and county in a locality list. Fuels, sand and gravel, and clay are not included in this report.

Declining occurrence and low colonization probability in freshwater mussel assemblages: A dynamic occurrence modeling approach

USGS Publications Warehouse

Pandolfo, Tamara J.; Kwak, Thomas J.; Cope, W. Gregory; Heise, Ryan J.; Nichols, Robert B.; Pacifici, Krishna

2017-01-01

Mussel monitoring data are abundant, but methods for analyzing long-term trends in these data are often uninformative or have low power to detect changes. We used a dynamic occurrence model, which accounted for imperfect species detection in surveys, to assess changes in species occurrence in a longterm data set (1986–2011) for the Tar River basin of North Carolina, USA. Occurrence of all species decreased steadily over the time period studied. Occurrence in 1986 ranged from 0.19 for Utterbackia imbecillis to 0.60 for Fusconaia masoni. Occurrence in 2010–2011 ranged from 0.10 for Lampsilis radiata to 0.40 for F. masoni. The maximum difference between occurrence in 1986 and 2011 was a decline of 0.30 for Alasmidonta undulata. Mean persistence for all species was high (0.97, 95% CI ¼ 0.95–0.99); however, mean colonization probability was very low (,0.01, 95% CI ¼ ,0.01–0.01). These results indicate that mussels persisted at sites already occupied but that they have not colonized sites where they had not occurred previously. Our findings highlight the importance of modeling approaches that incorporate imperfect detection in estimating species occurrence and revealing temporal trends to inform conservation planning.

Location identification of closed crack based on Duffing oscillator transient transition

NASA Astrophysics Data System (ADS)

Liu, Xiaofeng; Bo, Lin; Liu, Yaolu; Zhao, Youxuan; Zhang, Jun; Deng, Mingxi; Hu, Ning

2018-02-01

The existence of a closed micro-crack in plates can be detected by using the nonlinear harmonic characteristics of the Lamb wave. However, its location identification is difficult. By considering the transient nonlinear Lamb under the noise interference, we proposed a location identification method for the closed crack based on the quantitative measurement of Duffing oscillator transient transfer in the phase space. The sliding short-time window was used to create a window truncation of to-be-detected signal. And then, the periodic extension processing for transient nonlinear Lamb wave was performed to ensure that the Duffing oscillator has adequate response time to reach a steady state. The transient autocorrelation method was used to reduce the occurrence of missed harmonic detection due to the random variable phase of nonlinear Lamb wave. Moreover, to overcome the deficiency in the quantitative analysis of Duffing system state by phase trajectory diagram and eliminate the misjudgment caused by harmonic frequency component contained in broadband noise, logic operation method of oscillator state transition function based on circular zone partition was adopted to establish the mapping relation between the oscillator transition state and the nonlinear harmonic time domain information. Final state transition discriminant function of Duffing oscillator was used as basis for identifying the reflected and transmitted harmonics from the crack. Chirplet time-frequency analysis was conducted to identify the mode of generated harmonics and determine the propagation speed. Through these steps, accurate position identification of the closed crack was achieved.

Topographic controls on overland flow generation in a forest - An ensemble tree approach

NASA Astrophysics Data System (ADS)

Loos, Martin; Elsenbeer, Helmut

2011-10-01

SummaryOverland flow is an important hydrological pathway in many forests of the humid tropics. Its generation is subject to topographic controls at differing spatial scales. Our objective was to identify such controls on the occurrence of overland flow in a lowland tropical rainforest. To this end, we installed 95 overland flow detectors (OFDs) in four nested subcatchments of the Lutzito catchment on Barro Colorado Island, Panama, and monitored the frequency of overland flow occurrence during 18 rainfall events at each OFD location temporal frequency. For each such location, we derived three non-digital terrain attributes and 17 digital ones, of which 15 were based on Digital Elevation Models (DEMs) of three different resolutions. These attributes then served as input into a Random Forest ensemble tree model to elucidate the importance and partial and joint dependencies of topographic controls for overland flow occurrence. Lutzito features a high median temporal frequency in overland flow occurrence of 0.421 among OFD locations. However, spatial temporal frequencies of overland flow occurrence vary strongly among these locations and the subcatchments of Lutzito catchment. This variability is best explained by (1) microtopography, (2) coarse terrain sloping and (3) various measures of distance-to-channel, with the contribution of all other terrain attributes being small. Microtopographic features such as concentrated flowlines and wash areas produce highest temporal frequencies, whereas the occurrence of overland flow drops sharply for flow distances and terrain sloping beyond certain threshold values. Our study contributes to understanding both the spatial controls on overland flow generation and the limitations of terrain attributes for the spatially explicit prediction of overland flow frequencies.

Dirofilaria immitis in pinnipeds and a new host record.

PubMed

Alho, Ana Margarida; Marcelino, Inês; Colella, Vito; Flanagan, Carla; Silva, Nuno; Correia, Jorge Jesus; Latrofa, Maria Stefania; Otranto, Domenico; Madeira de Carvalho, Luís

2017-03-13

Dirofilaria immitis is a mosquito-borne pathogen that is spreading worldwide, and the associated infection (i.e. dirofilariosis) is becoming a threat to animals and humans living in endemic areas. Little is known about the occurrence and risk of infection of D. immitis in pinnipeds. Here we report dirofilariosis by D. immitis in several pinniped species kept in captivity in Portugal. Animals were housed in an oceanographic park located in Algarve, southern Portugal, a geographical area endemic for canine dirofilariosis. To assess the occurrence of D. immitis, blood was collected from the park's resident pinniped population, which consisted of 16 animals (5 common seals Phoca vitulina, 2 grey seals Halichoerus grypus, 3 California sea lions Zalophus californianus and 6 South African fur seals Arctocephalus pusillus pusillus). Dirofilaria immitis nematodes were detected by real-time PCR and by the presence of circulating antigens. In addition, modified Knott's technique was performed to detect circulating microfilariae. Necropsies and histopathological examination of two animals which died during the study were also conducted. Out of the 16 pinnipeds housed at the park, seven (43.8%) were positive for D. immitis by real-time PCR (3 P. vitulina, 2 Z. californianus and 2 A. p. pusillus), two of which (P. vitulina) were also positive for the nematode's antigen. Additionally, D. immitis microfilariae were detected in one A. p. pusillus. Furthermore, several D. immitis specimens were retrieved from the right ventricle and pulmonary arteries at the necropsy of one P. vitulina and one A. p. pusillus. This study provides new epidemiological data on D. immitis infection in pinnipeds diagnosed through clinical, molecular and pathological findings. Additionally, the South African fur seal is herein reported as a new host for this zoonotic filarioid. The situation herein described could also occur in other parks located in areas where canine dirofilariosis is endemic. Active surveillance and preventive measures of dirofilariosis in pinnipeds on a local and global scale are therefore vital to improve the early diagnosis and control of dirofilariosis.

Beyond scene gist: Objects guide search more than scene background.

PubMed

Koehler, Kathryn; Eckstein, Miguel P

2017-06-01

Although the facilitation of visual search by contextual information is well established, there is little understanding of the independent contributions of different types of contextual cues in scenes. Here we manipulated 3 types of contextual information: object co-occurrence, multiple object configurations, and background category. We isolated the benefits of each contextual cue to target detectability, its impact on decision bias, confidence, and the guidance of eye movements. We find that object-based information guides eye movements and facilitates perceptual judgments more than scene background. The degree of guidance and facilitation of each contextual cue can be related to its inherent informativeness about the target spatial location as measured by human explicit judgments about likely target locations. Our results improve the understanding of the contributions of distinct contextual scene components to search and suggest that the brain's utilization of cues to guide eye movements is linked to the cue's informativeness about the target's location. (PsycINFO Database Record (c) 2017 APA, all rights reserved).

Lightning Imaging Sensor (LIS) for the Earth Observing System

NASA Technical Reports Server (NTRS)

Christian, Hugh J.; Blakeslee, Richard J.; Goodman, Steven J.

1992-01-01

Not only are scientific objectives and instrument characteristics given of a calibrated optical LIS for the EOS but also for the Tropical Rainfall Measuring Mission (TRMM) which was designed to acquire and study the distribution and variability of total lightning on a global basis. The LIS can be traced to a lightning mapper sensor planned for flight on the GOES meteorological satellites. The LIS consists of a staring imager optimized to detect and locate lightning. The LIS will detect and locate lightning with storm scale resolution (i.e., 5 to 10 km) over a large region of the Earth's surface along the orbital track of the satellite, mark the time of occurrence of the lightning, and measure the radiant energy. The LIS will have a nearly uniform 90 pct. detection efficiency within the area viewed by the sensor, and will detect intracloud and cloud-to-ground discharges during day and night conditions. Also, the LIS will monitor individual storms and storm systems long enough to obtain a measure of the lightning flashing rate when they are within the field of view of the LIS. The LIS attributes include low cost, low weight and power, low data rate, and important science. The LIS will study the hydrological cycle, general circulation and sea surface temperature variations, along with examinations of the electrical coupling of thunderstorms with the ionosphere and magnetosphere, and observations and modeling of the global electric circuit.

Analysis of the impact of error detection on computer performance

NASA Technical Reports Server (NTRS)

Shin, K. C.; Lee, Y. H.

1983-01-01

Conventionally, reliability analyses either assume that a fault/error is detected immediately following its occurrence, or neglect damages caused by latent errors. Though unrealistic, this assumption was imposed in order to avoid the difficulty of determining the respective probabilities that a fault induces an error and the error is then detected in a random amount of time after its occurrence. As a remedy for this problem a model is proposed to analyze the impact of error detection on computer performance under moderate assumptions. Error latency, the time interval between occurrence and the moment of detection, is used to measure the effectiveness of a detection mechanism. This model is used to: (1) predict the probability of producing an unreliable result, and (2) estimate the loss of computation due to fault and/or error.

Occurrence and partitioning of antibiotic compounds found in the water column and bottom sediments from a stream receiving two wastewater treatment plant effluents in northern New Jersey, 2008.

PubMed

Gibs, Jacob; Heckathorn, Heather A; Meyer, Michael T; Klapinski, Frank R; Alebus, Marzooq; Lippincott, Robert L

2013-08-01

An urban watershed in northern New Jersey was studied to determine the presence of four classes of antibiotic compounds (macrolides, fluoroquinolones, sulfonamides, and tetracyclines) and six degradates in the water column and bottom sediments upstream and downstream from the discharges of two wastewater treatment plants (WWTPs) and a drinking-water intake (DWI). Many antibiotic compounds in the four classes not removed by conventional WWTPs enter receiving waters and partition to stream sediments. Samples were collected at nine sampling locations on 2 days in September 2008. Two of the nine sampling locations were background sites upstream from two WWTP discharges on Hohokus Brook. Another background site was located upstream from a DWI on the Saddle River above the confluence with Hohokus Brook. Because there is a weir downstream of the confluence of Hohokus Brook and Saddle River, the DWI receives water from Hohokus Brook at low stream flows. Eight antibiotic compounds (azithromycin (maximum concentration 0.24 μg/L), ciprofloxacin (0.08 μg/L), enrofloxacin (0.015 μg/L), erythromycin (0.024 μg/L), ofloxacin (0.92 μg/L), sulfamethazine (0.018 μg/L), sulfamethoxazole (0.25 μg/L), and trimethoprim (0.14 μg/L)) and a degradate (erythromycin-H2O (0.84 μg/L)) were detected in the water samples from the sites downstream from the WWTP discharges. The concentrations of six of the eight detected compounds and the detected degradate compound decreased with increasing distance downstream from the WWTP discharges. Azithromycin, ciprofloxacin, ofloxacin, and trimethoprim were detected in stream-bottom sediments. The concentrations of three of the four compounds detected in sediments were highest at a sampling site located downstream from the WWTP discharges. Trimethoprim was detected in the sediments from a background site. Pseudo-partition coefficients normalized for streambed sediment organic carbon concentration were calculated for azithromycin, ciprofloxacin, and ofloxacin. Generally, there was good agreement between the decreasing order of the pseudo-partition coefficients in this study and the order reported in the literature. Published by Elsevier B.V.

Model-based chatter stability prediction and detection for the turning of a flexible workpiece

NASA Astrophysics Data System (ADS)

Lu, Kaibo; Lian, Zisheng; Gu, Fengshou; Liu, Hunju

2018-02-01

Machining long slender workpieces still presents a technical challenge on the shop floor due to their low stiffness and damping. Regenerative chatter is a major hindrance in machining processes, reducing the geometric accuracies and dynamic stability of the cutting system. This study has been motivated by the fact that chatter occurrence is generally in relation to the cutting position in straight turning of slender workpieces, which has seldom been investigated comprehensively in literature. In the present paper, a predictive chatter model of turning a tailstock supported slender workpiece considering the cutting position change during machining is explored. Based on linear stability analysis and stiffness distribution at different cutting positions along the workpiece, the effect of the cutting tool movement along the length of the workpiece on chatter stability is studied. As a result, an entire stability chart for a single cutting pass is constructed. Through this stability chart the critical cutting condition and the chatter onset location along the workpiece in a turning operation can be estimated. The difference between the predicted tool locations and the experimental results was within 9% at high speed cutting. Also, on the basis of the predictive model the dynamic behavior during chatter that when chatter arises at some cutting location it will continue for a period of time until another specified location is arrived at, can be inferred. The experimental observation is in good agreement with the theoretical inference. In chatter detection respect, besides the delay strategy and overlap processing technique, a relative threshold algorithm is proposed to detect chatter by comparing the spectrum and variance of the acquired acceleration signals with the reference saved during stable cutting. The chatter monitoring method has shown reliability for various machining conditions.

Comparison of MTBE concentrations in groundwater of urban and nonurban areas in Germany.

PubMed

Kolb, Axel; Püttmann, Wilhelm

2006-11-01

The occurrence of the gasoline oxygenate methyl tert-butyl ether (MTBE) in groundwater samples from known fuel-contaminated sites (n=29 samples), nonurban (n=74) and urban sites (n=67) in Germany was investigated. The analyses revealed detection frequencies of 58% (contaminated sites), 24% (nonurban sites) and 63% (urban sites) at a detection limit of 0.01 microgL(-1). Median (maximum) MTBE concentrations were calculated for nonurban and urban samples as 0.18 microgL(-1) (2.2 microgL(-1)) and 0.06 microgL(-1) (48 microg L(-1)). The data from nonurban samples revealed MTBE detections mainly at public supply wells with higher pumping rates than monitoring wells. MTBE was more frequently detected in urban samples, most probably due to the higher atmospheric input and direct liquid emissions from motorways or gas stations. Higher concentrations above 1.0 microgL(-1) in urban areas were found in wells located at industrial sites, where also a MTBE plume was accidentally detected during the study. The prevalence of MTBE in shallow aquifers was comparable to those in the USA.

Environmental Determinants of the Occurrence and Distribution of Vibrio parahaemolyticus in the Rias of Galicia, Spain▿

PubMed Central

Martinez-Urtaza, Jaime; Lozano-Leon, Antonio; Varela-Pet, Jose; Trinanes, Joaquin; Pazos, Yolanda; Garcia-Martin, Oscar

2008-01-01

Infections associated with Vibrio parahaemolyticus on the coast of Galicia (in northwestern Spain) were reported to be linked to large outbreaks of illness during 1999 and 2000. Little information is available about the ecological factors that influence the emergence of V. parahaemolyticus infections in this temperate region. We carried out a 3-year study to investigate the occurrence and distribution of V. parahaemolyticus at 26 sites located in the four main rias of Galicia in association with environmental and oceanographic variables. V. parahaemolyticus was detected in all the areas investigated and throughout the complete period of study with an overall incidence of 12.5%. Salinity was the primary factor governing the temporal and spatial distribution of V. parahaemolyticus, whereas seawater temperature had a secondary effect and only modulated the abundance in periods and areas of reduced salinities. Higher occurrence of V. parahaemolyticus was observed during periods of lower salinity in autumn, with a total of 61 positive samples (18%) and a mean density of 1,234 most probable number/100 g. V. parahaemolyticus was primarily detected in areas of reduced salinity close to freshwater discharge points, where it was found in up to 45% of the samples. Characterization of the isolates obtained from the study resulted in the first identification of two pathogenic tdh-positive strains of V. parahaemolyticus recovered from the marine environment in Galicia. These isolates showed serotypes identical to and DNA profiles indistinguishable from those of the clinical clone of V. parahaemolyticus dominant in infections in Spain in the last 10 years. PMID:17981951

Real-Time Data Processing Systems and Products at the Alaska Earthquake Information Center

NASA Astrophysics Data System (ADS)

Ruppert, N. A.; Hansen, R. A.

2007-05-01

The Alaska Earthquake Information Center (AEIC) receives data from over 400 seismic sites located within the state boundaries and the surrounding regions and serves as a regional data center. In 2007, the AEIC reported ~20,000 seismic events, with the largest event of M6.6 in Andreanof Islands. The real-time earthquake detection and data processing systems at AEIC are based on the Antelope system from BRTT, Inc. This modular and extensible processing platform allows an integrated system complete from data acquisition to catalog production. Multiple additional modules constructed with the Antelope toolbox have been developed to fit particular needs of the AEIC. The real-time earthquake locations and magnitudes are determined within 2-5 minutes of the event occurrence. AEIC maintains a 24/7 seismologist-on-duty schedule. Earthquake alarms are based on the real- time earthquake detections. Significant events are reviewed by the seismologist on duty within 30 minutes of the occurrence with information releases issued for significant events. This information is disseminated immediately via the AEIC website, ANSS website via QDDS submissions, through e-mail, cell phone and pager notifications, via fax broadcasts and recorded voice-mail messages. In addition, automatic regional moment tensors are determined for events with M>=4.0. This information is posted on the public website. ShakeMaps are being calculated in real-time with the information currently accessible via a password-protected website. AEIC is designing an alarm system targeted for the critical lifeline operations in Alaska. AEIC maintains an extensive computer network to provide adequate support for data processing and archival. For real-time processing, AEIC operates two identical, interoperable computer systems in parallel.

Designing optimized multi-species monitoring networks to detect range shifts driven by climate change: a case study with bats in the North of Portugal.

PubMed

Amorim, Francisco; Carvalho, Sílvia B; Honrado, João; Rebelo, Hugo

2014-01-01

Here we develop a framework to design multi-species monitoring networks using species distribution models and conservation planning tools to optimize the location of monitoring stations to detect potential range shifts driven by climate change. For this study, we focused on seven bat species in Northern Portugal (Western Europe). Maximum entropy modelling was used to predict the likely occurrence of those species under present and future climatic conditions. By comparing present and future predicted distributions, we identified areas where each species is likely to gain, lose or maintain suitable climatic space. We then used a decision support tool (the Marxan software) to design three optimized monitoring networks considering: a) changes in species likely occurrence, b) species conservation status, and c) level of volunteer commitment. For present climatic conditions, species distribution models revealed that areas suitable for most species occur in the north-eastern part of the region. However, areas predicted to become climatically suitable in the future shifted towards west. The three simulated monitoring networks, adaptable for an unpredictable volunteer commitment, included 28, 54 and 110 sampling locations respectively, distributed across the study area and covering the potential full range of conditions where species range shifts may occur. Our results show that our framework outperforms the traditional approach that only considers current species ranges, in allocating monitoring stations distributed across different categories of predicted shifts in species distributions. This study presents a straightforward framework to design monitoring schemes aimed specifically at testing hypotheses about where and when species ranges may shift with climatic changes, while also ensuring surveillance of general population trends.

Mapping the Relative Probability of Common Toad Occurrence in Terrestrial Lowland Farm Habitat in the United Kingdom.

PubMed

Salazar, Rosie D; Montgomery, Robert A; Thresher, Sarah E; Macdonald, David W

2016-01-01

The common toad (Bufo bufo) is of increasing conservation concern in the United Kingdom (UK) due to dramatic population declines occurring in the past century. Many of these population declines coincided with reductions in both terrestrial and aquatic habitat availability and quality and have been primarily attributed to the effect of agricultural land conversion (of natural and semi-natural habitats to arable and pasture fields) and pond drainage. However, there is little evidence available to link habitat availability with common toad population declines, especially when examined at a broad landscape scale. Assessing such patterns of population declines at the landscape scale, for instance, require an understanding of how this species uses terrestrial habitat. We intensively studied the terrestrial resource selection of a large population of common toads in Oxfordshire, England, UK. Adult common toads were fitted with passive integrated transponder (PIT) tags to allow detection in the terrestrial environment using a portable PIT antenna once toads left the pond and before going into hibernation (April/May-October 2012 and 2013). We developed a population-level resource selection function (RSF) to assess the relative probability of toad occurrence in the terrestrial environment by collecting location data for 90 recaptured toads. The predicted relative probability of toad occurrence for this population was greatest in wooded habitat near to water bodies; relative probability of occurrence declined dramatically > 50 m from these habitats. Toads also tended to select habitat near to their breeding pond and toad occurrence was negatively related to urban environments.

Giant Planet Occurrence Rate as a Function of Stellar Mass

NASA Astrophysics Data System (ADS)

Reffert, Sabine; Bergmann, Christoph; Quirrenbach, Andreas; Trifonov, Trifon; Künstler, Andreas

2013-07-01

For over 12 years we have carried out a Doppler survey at Lick Observatory, identifying 15 planets and 20 candidate planets in a sample of 373 G and K giant stars. We investigate giant planet occurrence rate as a function of stellar mass and metallicity in this sample, which covers the mass range from about 1 to 3.5-5.0 solar masses. We confirm the presence of a strong planet-metallicity correlation in our giant star sample, which is fully consistent with the well-known planet-metallicity correlation for main-sequence stars. Furthermore, we find a very strong dependence of the giant planet occurrence rate on stellar mass, which we fit with a gaussian distribution. Stars with masses of about 1.9 solar masses have the highest probability of hosting a giant planet, whereas the planet occurrence rate drops rapidly for masses larger than 2.5 to 3.0 solar masses. We do not find any planets around stars more massive than 2.7 solar masses, although we have 113 stars with masses between 2.7 and 5.0 solar masses in our sample (planet occurrence rate in that mass range: 0% +1.6% at 68.3% confidence). This result is not due to a bias related to planet detectability as a function of stellar mass. We conclude that larger mass stars do not form giant planets which are observable at orbital distances of a few AU today. Possible reasons include slower growth rate due to the snow-line being located further out, longer migration timescale and faster disk depletion.

Occurrence of organic wastewater contaminants, pharmaceuticals, and personal care products in selected water supplies, Cape Cod, Massachusetts, June 2004

USGS Publications Warehouse

Zimmerman, Marc J.

2005-01-01

In June 2004, the U.S. Geological Survey, in cooperation with the Barnstable County Department of Health and Environment, sampled water from 14 wastewater sources and drinking-water supplies on Cape Cod, Massachusetts, for the presence of organic wastewater contaminants, pharmaceuticals, and personal care products. The geographic distribution of sampling locations does not represent the distribution of drinking-water supplies on Cape Cod. The environmental presence of the analyte compounds is mostly unregulated; many of the compounds are suspected of having adverse ecological and human health effects. Of the 85 different organic analyte compounds, 43 were detected, with 13 detected in low concentrations (less than 1 microgram per liter) from drinking-water supplies thought to be affected by wastewater because of previously detected high nitrate concentrations. (Phenol and d-limonene, detected in equipment blanks at unacceptably high concentrations, are not included in counts of detections in this report.) Compounds detected in the drinking-water supplies included the solvent, tetrachloroethylene; the analgesic, acetaminophen; the antibiotic, sulfamethoxazole; and the antidepressant, carbamazapine. Nitrate nitrogen, an indicator of wastewater, was detected in water supplies in concentrations ranging from 0.2 to 8.8 milligrams per liter.

TH-AB-202-02: Real-Time Verification and Error Detection for MLC Tracking Deliveries Using An Electronic Portal Imaging Device

DOE Office of Scientific and Technical Information (OSTI.GOV)

J Zwan, B; Central Coast Cancer Centre, Gosford, NSW; Colvill, E

2016-06-15

Purpose: The added complexity of the real-time adaptive multi-leaf collimator (MLC) tracking increases the likelihood of undetected MLC delivery errors. In this work we develop and test a system for real-time delivery verification and error detection for MLC tracking radiotherapy using an electronic portal imaging device (EPID). Methods: The delivery verification system relies on acquisition and real-time analysis of transit EPID image frames acquired at 8.41 fps. In-house software was developed to extract the MLC positions from each image frame. Three comparison metrics were used to verify the MLC positions in real-time: (1) field size, (2) field location and, (3)more » field shape. The delivery verification system was tested for 8 VMAT MLC tracking deliveries (4 prostate and 4 lung) where real patient target motion was reproduced using a Hexamotion motion stage and a Calypso system. Sensitivity and detection delay was quantified for various types of MLC and system errors. Results: For both the prostate and lung test deliveries the MLC-defined field size was measured with an accuracy of 1.25 cm{sup 2} (1 SD). The field location was measured with an accuracy of 0.6 mm and 0.8 mm (1 SD) for lung and prostate respectively. Field location errors (i.e. tracking in wrong direction) with a magnitude of 3 mm were detected within 0.4 s of occurrence in the X direction and 0.8 s in the Y direction. Systematic MLC gap errors were detected as small as 3 mm. The method was not found to be sensitive to random MLC errors and individual MLC calibration errors up to 5 mm. Conclusion: EPID imaging may be used for independent real-time verification of MLC trajectories during MLC tracking deliveries. Thresholds have been determined for error detection and the system has been shown to be sensitive to a range of delivery errors.« less

Cohort study of atypical pressure ulcers development.

PubMed

Jaul, Efraim

2014-12-01

Atypical pressure ulcers (APU) are distinguished from common pressure ulcers (PU) with both unusual location and different aetiology. The occurrence and attempts to characterise APU remain unrecognised. The purpose of this cohort study was to analyse the occurrence of atypical location and the circumstances of the causation, and draw attention to the prevention and treatment by a multidisciplinary team. The cohort study spanned three and a half years totalling 174 patients. The unit incorporates two weekly combined staff meetings. One concentrates on wound assessment with treatment decisions made by the physician and nurse, and the other, a multidisciplinary team reviewing all patients and coordinating treatment. The main finding of this study identified APU occurrence rate of 21% within acquired PU over a three and a half year period. Severe spasticity constituted the largest group in this study and the most difficult to cure wounds, located in medial aspects of knees, elbows and palms. Medical devices caused the second largest occurrence of atypical wounds, located in the nape of the neck, penis and nostrils. Bony deformities were the third recognisable atypical wound group located in shoulder blades and upper spine. These three categories are definable and time observable. APU are important to be recognisable, and can be healed as well as being prevented. The prominent role of the multidisciplinary team is primary in identification, prevention and treatment. © 2013 The Authors. International Wound Journal © 2013 Medicalhelplines.com Inc and John Wiley & Sons Ltd.

Trends analysis of rainfall and rainfall extremes in Sarawak, Malaysia using modified Mann-Kendall test

NASA Astrophysics Data System (ADS)

Sa'adi, Zulfaqar; Shahid, Shamsuddin; Ismail, Tarmizi; Chung, Eun-Sung; Wang, Xiao-Jun

2017-11-01

This study assesses the spatial pattern of changes in rainfall extremes of Sarawak in recent years (1980-2014). The Mann-Kendall (MK) test along with modified Mann-Kendall (m-MK) test, which can discriminate multi-scale variability of unidirectional trend, was used to analyze the changes at 31 stations. Taking account of the scaling effect through eliminating the effect of autocorrelation, m-MK was employed to discriminate multi-scale variability of the unidirectional trends of the annual rainfall in Sarawak. It can confirm the significance of the MK test. The annual rainfall trend from MK test showed significant changes at 95% confidence level at five stations. The seasonal trends from MK test indicate an increasing rate of rainfall during the Northeast monsoon and a decreasing trend during the Southwest monsoon in some region of Sarawak. However, the m-MK test detected an increasing trend in annual rainfall only at one station and no significant trend in seasonal rainfall at any stations. The significant increasing trends of the 1-h maximum rainfall from the MK test are detected mainly at the stations located in the urban area giving concern to the occurrence of the flash flood. On the other hand, the m-MK test detected no significant trend in 1- and 3-h maximum rainfalls at any location. On the contrary, it detected significant trends in 6- and 72-h maximum rainfalls at a station located in the Lower Rajang basin area which is an extensive low-lying agricultural area and prone to stagnant flood. These results indicate that the trends in rainfall and rainfall extremes reported in Malaysia and surrounding region should be verified with m-MK test as most of the trends may result from scaling effect.

Characteristics of cirrus clouds and tropical tropopause layer: Seasonal variation and long-term trends

NASA Astrophysics Data System (ADS)

Pandit, Amit Kumar; Gadhavi, Harish; Ratnam, M. Venkat; Jayaraman, A.; Raghunath, K.; Rao, S. Vijaya Bhaskara

2014-12-01

In the present study, characteristics of tropical cirrus clouds observed during 1998-2013 using a ground-based lidar located at Gadanki (13.5°N, 79.2°E), India, are presented. Altitude occurrences of cirrus clouds as well as its top and base heights are estimated using the advanced mathematical tool, wavelet covariance transform (WCT). The association of observed cirrus cloud properties with the characteristics of tropical tropopause layer (TTL) is investigated using co-located radiosonde measurements available since 2006. In general, cirrus clouds occurred for about 44% of the total lidar observation time (6246 h). The most probable altitude at which cirrus clouds occurr is 14.5 km. The occurrence of cirrus clouds exhibited a strong seasonal dependence with maximum occurrence during monsoon season (76%) and minimum occurrence during winter season (33%) which is consistent with the results reported recently using space-based lidar measurements. Most of the time, cirrus top was located within the TTL (between cold point and convective outflow level) while cirrus base occurred near the convective outflow level. The geometrical thickness of the cirrus cloud is found to be higher during monsoon season compared to winter and there exists a weak inverse relation with TTL thickness. During the observation period the percentage occurrence of cirrus clouds near the tropopause showed an 8.4% increase at 70% confidence level. In the last 16 years, top and base heights of cirrus cloud increased by 0.56 km and 0.41 km, respectively.

False alarm recognition in hyperspectral gas plume identification

DOEpatents

Conger, James L [San Ramon, CA; Lawson, Janice K [Tracy, CA; Aimonetti, William D [Livermore, CA

2011-03-29

According to one embodiment, a method for analyzing hyperspectral data includes collecting first hyperspectral data of a scene using a hyperspectral imager during a no-gas period and analyzing the first hyperspectral data using one or more gas plume detection logics. The gas plume detection logic is executed using a low detection threshold, and detects each occurrence of an observed hyperspectral signature. The method also includes generating a histogram for all occurrences of each observed hyperspectral signature which is detected using the gas plume detection logic, and determining a probability of false alarm (PFA) for all occurrences of each observed hyperspectral signature based on the histogram. Possibly at some other time, the method includes collecting second hyperspectral data, and analyzing the second hyperspectral data using the one or more gas plume detection logics and the PFA to determine if any gas is present. Other systems and methods are also included.

Mines, prospects, and occurrences of nonmetallic mineral commodities in the Greenville 1 degree by 2 degrees Quadrangle, South Carolina, Georgia, and North Carolina

USGS Publications Warehouse

D'Agostino, John P.; O'Connor, Bruce J.; Zupan, Alan J.W.; Maybin, Arthur H.

1994-01-01

Mines, prospects, and occurrences of nonmetal mineral commodities in the Greenville 1° x 2° quadrangle are tabulated in this report. There are 488 symbols representing 579 mines, prospects, and occurrences located in the quadrangle. There are 379 symbols used for 466 features in Georgia, 106 symbols for 110 features in South Carolina, and 3 symbols for 3 features in North Carolina. The table lists, in consecutive orders for each county (fig. 1), the map number of each feature, which correlates and locates the item on the accompanying Greenville 1° x 2° quadrangle map. Also listed are the known name of the feature; the 7.5 topographic map on which the commodity site is located; the Transverse Mercator (UTM) northing and easting grid coordinates from the appropriate 7.5’ topographic map; the commodity; remarks; and references. Some locations are known, but many sites are not verified and their locations are only approximate. Reference are listed in References Cited and referred to by number to save space. The generalized tectonic framework for the quadrangle is shown in figure 2.

Dynamics of Whale Shark Occurrence at Their Fringe Oceanic Habitat

PubMed Central

Afonso, Pedro; McGinty, Niall; Machete, Miguel

2014-01-01

Studies have shown that the whale shark (Rhincodon typus), a vulnerable large filter feeder, seasonally aggregates at highly productive coastal sites and that individuals can perform large, trans-boundary migrations to reach these locations. Yet, the whereabouts of the whale shark when absent from these sites and the potential oceanographic and biological drivers involved in shaping their present and future habitat use, including that located at the fringes of their suitable oceanic habitat, are largely unknown. We analysed a 16-year (1998–2013) observer dataset from the pole-and-line tuna fishery across the Azores (mid-North Atlantic) and used GAM models to investigate the spatial and temporal patterns of whale shark occurrence in relation to oceanographic features. Across this period, the whale shark became a regular summer visitor to the archipelago after a sharp increase in sighting frequency seen in 2008. We found that SST helps predicting their occurrence in the region associated to the position of the seasonal 22°C isotherm, showing that the Azores are at a thermal boundary for this species and providing an explanation for the post 2007 increase. Within the region, whale shark detections were also higher in areas of increased bathymetric slope and closer to the seamounts, coinciding with higher chl-a biomass, a behaviour most probably associated to increased feeding opportunities. They also showed a tendency to be clustered around the southernmost island of Santa Maria. This study shows that the region integrates the oceanic habitat of adult whale shark and suggests that an increase in its relative importance for the Atlantic population might be expected in face of climate change. PMID:25028929

Dynamics of whale shark occurrence at their fringe oceanic habitat.

PubMed

Afonso, Pedro; McGinty, Niall; Machete, Miguel

2014-01-01

Studies have shown that the whale shark (Rhincodon typus), a vulnerable large filter feeder, seasonally aggregates at highly productive coastal sites and that individuals can perform large, trans-boundary migrations to reach these locations. Yet, the whereabouts of the whale shark when absent from these sites and the potential oceanographic and biological drivers involved in shaping their present and future habitat use, including that located at the fringes of their suitable oceanic habitat, are largely unknown. We analysed a 16-year (1998-2013) observer dataset from the pole-and-line tuna fishery across the Azores (mid-North Atlantic) and used GAM models to investigate the spatial and temporal patterns of whale shark occurrence in relation to oceanographic features. Across this period, the whale shark became a regular summer visitor to the archipelago after a sharp increase in sighting frequency seen in 2008. We found that SST helps predicting their occurrence in the region associated to the position of the seasonal 22°C isotherm, showing that the Azores are at a thermal boundary for this species and providing an explanation for the post 2007 increase. Within the region, whale shark detections were also higher in areas of increased bathymetric slope and closer to the seamounts, coinciding with higher chl-a biomass, a behaviour most probably associated to increased feeding opportunities. They also showed a tendency to be clustered around the southernmost island of Santa Maria. This study shows that the region integrates the oceanic habitat of adult whale shark and suggests that an increase in its relative importance for the Atlantic population might be expected in face of climate change.

Occurrence of cocaine and benzoylecgonine in drinking and source water in the São Paulo State region, Brazil.

PubMed

Campestrini, Iolana; Jardim, Wilson F

2017-01-15

The occurrence of illicit drugs in natural waters (surface, source and drinking water) is of interest due to the poor sanitation coverage and the high consumption of drugs of abuse in Brazil. In addition, little is known about the effects of these compounds on aquatic organisms and human health. This work investigates the occurrence of cocaine (COC) and its major metabolite, benzoylecgonine (BE), in surface and drinking water collected in rivers from a populated geographic area in Brazil. Surface water samples were collected in 22 locations from 16 different rivers and one dam from São Paulo State, whereas drinking water samples were collected in 5 locations. Samples were collected during the dry and wet season. Among the 34 surface water samples analyzed, BE was detected above the LOD in 94%, while COC in 85%. BE concentrations ranged from 10ngL -1 to 1019ngL -1 and COC concentrations from 6ngL -1 to 62ngL -1 . In the drinking water samples analyzed, BE and COC were found in 100% of the samples analyzed. For BE, concentrations were found in the range from 10ngL -1 to 652ngL -1 , and COC was quantified in concentrations between 6 and 22ngL -1 . These concentrations are one of the highest found in urban surface waters and may pose some risk to aquatic species. However, no human health risk was identified using the Hazard Quotient. BE is proposed as a reliable indicator of sewage contamination in both source and drinking water. Copyright © 2016 Elsevier B.V. All rights reserved.

Subsurface Cavity Detection by Using Integrated Geophysical Methods

NASA Astrophysics Data System (ADS)

Aykaç, Sinem; Rezzan Ozerk, Zeynep; Işıkdeniz Şerifoǧlu, Betül; Bihter Demirci, Büşra; Timur, Emre; Çakir, Korhan

2016-04-01

Global warming experienced in recent years in Turkey has led to a severe drought around the Konya Plain in central Anatolia .As a result, excessive amount of ground water was drawn in the region for the sustainability of agricultural activities. So, five small-scale shallow depth sinkholes have occured at different times, at an average interval between 400-450 m. in the study area; Konya-Atlantı. Generally, sinkholes formation occurres among natural processes has turned into disasters caused by humans due to excessive use of groundwater. Consequently, investigations were carried out within a partnership research programme on cavity detection and ground penetration radar, microgravity and multi-frequency electromagnetic methods were jointly utilized. . Exact locations and dimensions of two possible hidden cavities were determined by using these multidisciplinary methods. Keywords: Cavity;Ground-penetrating radar;Konya;Microgravimetry;Multi-frequency electromagnetic method.

The Anglo-Australian Planet Search XXIV: The Frequency of Jupiter Analogs

NASA Astrophysics Data System (ADS)

Wittenmyer, Robert A.; Butler, R. P.; Tinney, C. G.; Horner, Jonathan; Carter, B. D.; Wright, D. J.; Jones, H. R. A.; Bailey, J.; O'Toole, Simon J.

2016-03-01

We present updated simulations of the detectability of Jupiter analogs by the 17-year Anglo-Australian Planet Search. The occurrence rate of Jupiter-like planets that have remained near their formation locations beyond the ice line is a critical datum necessary to constrain the details of planet formation. It is also vital in our quest to fully understand how common (or rare) planetary systems like our own are in the Galaxy. From a sample of 202 solar-type stars, and correcting for imperfect detectability on a star-by-star basis, we derive a frequency of {6.2}-1.6+2.8% for giant planets in orbits from 3 to 7 au. When a consistent definition of “Jupiter analog” is used, our results are in agreement with those from other legacy radial-velocity surveys.

Assessment of frequency and duration of point counts when surveying for golden eagle presence

USGS Publications Warehouse

Skipper, Ben R.; Boal, Clint W.; Tsai, Jo-Szu; Fuller, Mark R.

2017-01-01

We assessed the utility of the recommended golden eagle (Aquila chrysaetos) survey methodology in the U.S. Fish and Wildlife Service 2013 Eagle Conservation Plan Guidance. We conducted 800-m radius, 1-hr point-count surveys broken into 20-min segments, during 2 sampling periods in 3 areas within the Intermountain West of the United States over 2 consecutive breeding seasons during 2012 and 2013. Our goal was to measure the influence of different survey time intervals and sampling periods on detectability and use estimates of golden eagles among different locations. Our results suggest that a less intensive effort (i.e., survey duration shorter than 1 hr and point-count survey radii smaller than 800 m) would likely be inadequate for rigorous documentation of golden eagle occurrence pre- or postconstruction of wind energy facilities. Results from a simulation analysis of detection probabilities and survey effort suggest that greater temporal and spatial effort could make point-count surveys more applicable for evaluating golden eagle occurrence in survey areas; however, increased effort would increase financial costs associated with additional person-hours and logistics (e.g., fuel, lodging). Future surveys can benefit from a pilot study and careful consideration of prior information about counts or densities of golden eagles in the survey area before developing a survey design. If information is lacking, survey planning may be best served by assuming low detection rates and increasing the temporal and spatial effort.

First detection of bat white-nose syndrome in western North America

USGS Publications Warehouse

Lorch, Jeffrey M.; Palmer, Jonathan M.; Lindner, Daniel L.; Ballmann, Anne; George, Kyle; Griffin, Kathryn M.; Knowles, Susan N.; Huckabee, John R.; Haman, Katherine H.; Anderson, Christopher D.; Becker, Penny A.; Buchanan, Joseph B.; Foster, Jeffrey T.; Blehert, David

2016-01-01

White-nose syndrome (WNS) is an emerging fungal disease of bats caused by Pseudogymnoascus destructans. Since it was first detected near Albany, NY, in 2006, the fungus has spread across eastern North America, killing unprecedented numbers of hibernating bats. The devastating impacts of WNS on Nearctic bat species are attributed to the likely introduction of P. destructans from Eurasia to naive host populations in eastern North America. Since 2006, the disease has spread in a gradual wavelike pattern consistent with introduction of the pathogen at a single location. Here, we describe the first detection of P. destructans in western North America in a little brown bat (Myotis lucifugus) from near Seattle, WA, far from the previously recognized geographic distribution of the fungus. Whole-genome sequencing and phylogenetic analyses indicated that the isolate of P. destructans from Washington grouped with other isolates of a presumed clonal lineage from the eastern United States. Thus, the occurrence of P. destructans in Washington does not likely represent a novel introduction of the fungus from Eurasia, and the lack of intensive surveillance in the western United States makes it difficult to interpret whether the occurrence of P. destructans in the Pacific Northwest is disjunct from that in eastern North America. Although there is uncertainty surrounding the impacts of WNS in the Pacific Northwest, the presence of the pathogen in western North America could have major consequences for bat conservation.

Avian influenza survey in migrating waterfowl in Sonora, Mexico.

PubMed

Montalvo-Corral, M; López-Robles, G; Hernández, J

2011-02-01

A two-year survey was carried out on the occurrence of avian influenza in migrating birds in two estuaries of the Mexican state of Sonora, which is located within the Pacific flyway. Cloacal and oropharyngeal swabs were collected from 1262 birds, including 20 aquatic bird species from the Moroncarit and Tobari estuaries in Sonora, Mexico. Samples were tested for type A influenza (M), H5 Eurasian and North American subtypes (H5EA and H5NA respectively) and the H7 North American subtype (H7NA). Gene detection was determined by one-step real-time reverse transcription polymerase chain reaction (RRT-PCR). The results revealed that neither the highly pathogenic avian influenza virus H5 of Eurasian lineage nor H7NA were detected. The overall prevalence of avian influenza type A (M-positive) in the sampled birds was 3.6% with the vast majority in dabbling ducks (Anas species). Samples from two birds, one from a Redhead (Aythya americana) and another from a Northern Shoveler (Anas clypeata), were positive for the low-pathogenic H5 avian influenza virus of North American lineage. These findings represented documented evidence of the occurrence of avian influenza in wintering birds in the Mexican wetlands. This type of study contributes to the understanding of how viruses spread to new regions of North America and highlights the importance of surveillance for the early detection and control of potentially pathogenic strains, which could affect animal and human health. © 2010 Blackwell Verlag GmbH.

Occurrence of veterinary antibiotics and progesterone in broiler manure and agricultural soil in Malaysia.

PubMed

Ho, Yu Bin; Zakaria, Mohamad Pauzi; Latif, Puziah Abdul; Saari, Nazamid

2014-08-01

Repeated applications of animal manure as fertilizer are normal agricultural practices that may release veterinary antibiotics and hormones into the environment from treated animals. Broiler manure samples and their respective manure-amended agricultural soil samples were collected in selected locations in the states of Selangor, Negeri Sembilan and Melaka in Malaysia to identify and quantify veterinary antibiotic and hormone residues in the environment. The samples were analyzed using ultrasonic extraction followed by solid phase extraction (SPE) and liquid chromatography-tandem mass spectrometry (LC-MS/MS). The broiler manure samples were found to be contaminated with at least six target analytes, namely, doxycycline, enrofloxacin, flumequine, norfloxacin, trimethoprim and tylosin. These analytes were detected in broiler manure samples with maximum concentrations reaching up to 78,516 μg kg(-1) dry weight (DW) (doxycycline). For manure-amended agricultural soil samples, doxycycline and enrofloxacin residues were detected in every soil sample. The maximum concentration of antibiotic detected in soil was 1331 μg kg(-1) DW (flumequine). The occurrence of antibiotics and hormones in animal manure at high concentration poses a risk of contaminating agricultural soil via fertilization with animal manure. Some physico-chemical parameters such as pH, total organic carbon (TOC) and metal content played a considerable role in the fate of the target veterinary antibiotics and progesterone in the environment. It was suggested that these parameters can affect the adsorption of pharmaceuticals to solid environmental matrices. Copyright © 2014 Elsevier B.V. All rights reserved.

Detection and analysis of a transient energy burst with beamforming of multiple teleseismic phases

NASA Astrophysics Data System (ADS)

Retailleau, Lise; Landès, Matthieu; Gualtieri, Lucia; Shapiro, Nikolai M.; Campillo, Michel; Roux, Philippe; Guilbert, Jocelyn

2018-01-01

Seismological detection methods are traditionally based on picking techniques. These methods cannot be used to analyse emergent signals where the arrivals cannot be picked. Here, we detect and locate seismic events by applying a beamforming method that combines multiple body-wave phases to USArray data. This method explores the consistency and characteristic behaviour of teleseismic body waves that are recorded by a large-scale, still dense, seismic network. We perform time-slowness analysis of the signals and correlate this with the time-slowness equivalent of the different body-wave phases predicted by a global traveltime calculator, to determine the occurrence of an event with no a priori information about it. We apply this method continuously to one year of data to analyse the different events that generate signals reaching the USArray network. In particular, we analyse in detail a low-frequency secondary microseismic event that occurred on 2010 February 1. This event, that lasted 1 d, has a narrow frequency band around 0.1 Hz, and it occurred at a distance of 150° to the USArray network, South of Australia. We show that the most energetic phase observed is the PKPab phase. Direct amplitude analysis of regional seismograms confirms the occurrence of this event. We compare the seismic observations with models of the spectral density of the pressure field generated by the interferences between oceanic waves. We attribute the observed signals to a storm-generated microseismic event that occurred along the South East Indian Ridge.

The day-to-day occurrence of equatorial plasma bubbles measured from Vanimo, Papua New Guinea

NASA Astrophysics Data System (ADS)

Carter, B. A.; Yizengaw, E.; Francis, M.; Terkildsen, M. B.; Marshall, R. A.; Norman, R.; Zhang, K.

2013-12-01

An analysis of the occurrence of Equatorial Plasma Bubbles (EPBs) detected using a ground-based Global Positioning System (GPS) receiver located at Vanimo in South-east Asia will be presented. The 3-year (2000-2002) dataset employed shows that the EPB occurrence maximizes (minimizes) during the equinoxes (solstices), in good agreement with previous findings. The low-latitude ionosonde station at Vanimo is used in conjunction with the GPS receiver in an analysis of the day-to-day EPB occurrence variability during the equinox period. A superposed epoch analysis of the ionosonde data reveals that the height, and the change in height, of the F layer is 1 standard deviation (1σ) larger on the days for which EPBs were detected, compared to non-EPB days. These results are interpreted using the generalized Rayleigh-Taylor (R-T) plasma instability growth rate, for which stronger upward drift of the lower-altitude F-layer plasma promotes faster growth of EPBs after sunset. These results are then compared to the results of the Thermosphere Ionosphere Electrodynamic General Circulation Model (TIEGCM), which surprisingly show strong similarities to the observations, despite only using geomagnetic and solar activity inputs. The TIEGCM is also used to directly calculate the hourly flux-tube integrated R-T growth rate. A superposed epoch analysis reveals that the modeled R-T growth rate is a little less than 1σ higher on average for EPB days compared to non-EPB days. The implication of this result is that the TIEGCM generates almost enough day-to-day variability in order to account for the day-to-day EPB occurrence observed during the equinox. This result isn't necessarily expected due to the model's limited altitude coverage of 100-700 km (depending on solar activity) and the lack of ionospheric observation inputs. It is thought that the remaining variability could originate from either lower altitudes (e.g. atmospheric gravity waves from the troposphere) or from higher altitudes (resulting from coupling with the magnetosphere and solar wind), or potentially both. It is concluded that the continuing advancement of numerical modeling of the thermosphere and ionosphere, coupled with altitudes above and below, is required to better understand the day-to-day EPB occurrence.

Detection of conduit-controlled ground-water flow in northwestern Puerto Rico using aerial photograph interpretation and geophysical methods

USGS Publications Warehouse

Rodríguez-Martínez, Jesús; Richards, Ronald T.

2000-01-01

The development potential of ground-water resources in the karst limestone of northwestern Puerto Rico, in an area extending from the Río Camuy to Aguadilla, is uncertain as a result of limited knowledge of the location of areas where a high density of cavities (interconnected fractures, conduits, and other dissolution features) might suggest the occurrence of high water yields. The presence in northwestern Puerto Rico of numerous coastal submarine springs, cavernous porosity in some of the wells, and rivers with entrenched and underground paths, indicate that it is probable that water-bearing, subterranean interconnected cavities occur in the area between the Río Camuy and Aguadilla. The number of exploratory wells needed to determine the location of these conduits or zones of enhanced secondary porosity could be substantially reduced if more information were available about the location of these subterranean features, greatly reducing the drilling costs associated with a trial-and-error exploratory process. A 3-year study was conducted by the U.S. Geological Survey, in cooperation with the Puerto Rico Aqueduct and Sewer Authority, to detect the presence of cavities that might suggest the occurrence of conduit-controlled groundwater flow. Aerial photographs, geologic and topographic maps, and field reconnaissance were used to identify such linear terrain features as ridges, entrenched canyons, and fracture traces. Natural potential and gravity geophysical methods were also used. The following sites were selected for the aerial photograph interpretation and geophysical testing: Caimital Bajo uplands and former Ramey Air Force Base in Aguadilla; Quebrada de los Cedros between Aguadilla and Isabela; the University of Puerto Rico Agricultural Experiment Station, Otilio dairy farm, and Pozo Brujo in Isabela; the Monte Encantado area in Moca and Isabela; and the Rio Camuy cave system in Hatillo and Camuy. In general, the degree of success varied with site and the geophysical method used. At some sites such as Pozo Brujo, the University of Puerto Rico Agricultural Experiment Station, and Monte Encantado area, natural potential anomalies strongly suggest the existence of conduits with flowing water. At most sites, however, the results obtained did not clearly reveal the presence of subsurface cavities that might be associated with the occurrence of conduit-controlled ground-water flow. Sites such as the University of Puerto Rico Agricultural Experiment Station, Pozo Brujo, and Quebrada de los Cedros warrant a more detailed analysis, including a test well drilling phase to confirm the presence of suspected high-yield water-bearing zones.

Coastal Upwelling and Deep Fog: 50-year Worldwide Climatology

NASA Astrophysics Data System (ADS)

Koracin, D. R.

2015-12-01

An analysis is presented of the marine fog distribution based upon the International Comprehensive Ocean-Atmosphere Data Set (ICOADS) ship observations taken during 1950-2007. Deep fog occurrence is reported in routine weather reports that are encoded in an ICOADS ship observation. Occurrence is estimated by the number of deep fog observations divided by the total present weather observations in a one-degree area centered on latitude and longitude grid point intersections. The mean fog occurrence for the summer (June-July-August) 1950-2007 was computed for each one degree point for the world. There are five major world locations with coastal SST minimums due to wind driven upwelling. Four of these are during the local summer on the eastern side of a semi-permanent anticyclone on eastern sides of northern and southern mid-latitudes of the Pacifica and the Atlantic. The fifth is during the SW monsoon in the Indian Ocean. For all five of these locations, the deep fog occurrence is at maximum during the upwelling season, with the greatest occurrences concentrated along the coast and isolated over the SST minimum. For the five coastal fog maxima, the greatest and longest duration occurrence along coast occurrence is associated with the coldest sea surface temperature and longest along coast occurrence, which is along N. California- S. Oregon. In contrast, the lowest occurrence of fog and the least along coast occurrence is associated with the warmest sea surface temperatures and least along coast occurrence along the SE Arabian Peninsula. The remaining three zones, Peru-Chile, NW Africa, and SW Africa are between the two extremes in fog occurrence, along coast coverage and sea surface temperature. Peru-Chile is more complex than the others as the Peru upwelling and fog appears the more dominant although ship observations are sparse along Chile.

Occurrence detection and selection procedures in healthcare facilities: a comparison across Canada and Brazil.

PubMed

Morita, Plinio P; Burns, Catherine M

2011-01-01

Healthcare institutions face high levels of risk on a daily basis. Efforts have been made to address these risks and turn this complex environment into a safer environment for patients, staff, and visitors. However, healthcare institutions need more advanced risk management tools to achieve the safety levels currently seen in other industries. One of these potential tools is occurrence investigation systems. In order to be investigated, occurrences must be detected and selected for investigation, since not all institutions have enough resources to investigate all occurrences. A survey was conducted in healthcare institutions in Canada and Brazil to evaluate currently used risk management tools, the difficulties faced, and the possibilities for improvement. The findings include detectability difficulties, lack of resources, lack of support, and insufficient staff involvement.

The detection of Yersinia enterocolitica in surface water by quantitative PCR amplification of the ail and yadA genes.

PubMed

Cheyne, Bo M; Van Dyke, Michele I; Anderson, William B; Huck, Peter M

2010-09-01

Yersinia enterocolitica has been detected in surface water, and drinking untreated water is a risk factor for infection. PCR-based methods have been used to detect Y. enterocolitica in various sample types, but quantitative studies have not been conducted in water. In this study, quantitative PCR (qPCR)-based methods targeting the Yersinia virulence genes ail and yadA were used to survey the Grand River watershed in southern Ontario, Canada. Initial testing of reference strains showed that ail and yadA PCR assays were specific for pathogenic biotypes of Y. enterocolitica; however the genes were also detected in one clinical Yersinia intermedia isolate. A survey of surface water from the Grand River watershed showed that both genes were detected at five sampling locations, with the ail and yadA genes detected in 38 and 21% of samples, respectively. Both genes were detected more frequently at colder water temperatures. A screening of Yersinia strains isolated from the watershed showed that the ail gene was detected in three Y. enterocolitica 1A/O:5 isolates. Results of this study show that Yersinia virulence genes were commonly detected in a watershed used as a source of drinking water, and that the occurrence of these genes was seasonal.

The World Trade Center Attack Disaster preparedness: health care is ready, but is the bureaucracy?

PubMed Central

Mattox, Kenneth

2001-01-01

When a disaster occurs, it is for governments to provide the leadership, civil defense, security, evacuation, and public welfare. The medical aspects of a disaster account for less than 10% of resource and personnel expenditure. Hospitals and health care provider teams respond to unexpected occurrences such as explosions, earthquakes, floods, fires, war, or the outbreak of an infectious epidemic. In some geographic locations where natural disasters are common, such as earthquakes in Japan, such disaster practice drills are common. In other locations, disaster drills become pro forma and have no similarity to real or even projected and predicted disasters. The World Trade Center disaster on 11 September 2001 provides new information, and points out new threats, new information systems, new communication opportunities, and new detection methodologies. It is time for leaders of medicine to re-examine their approaches to disaster preparedness. PMID:11737919

The World Trade Center attack. Disaster preparedness: health care is ready, but is the bureaucracy?

PubMed

Mattox, K

2001-12-01

When a disaster occurs, it is for governments to provide the leadership, civil defense, security, evacuation, and public welfare. The medical aspects of a disaster account for less than 10% of resource and personnel expenditure. Hospitals and health care provider teams respond to unexpected occurrences such as explosions, earthquakes, floods, fires, war, or the outbreak of an infectious epidemic. In some geographic locations where natural disasters are common, such as earthquakes in Japan, such disaster practice drills are common. In other locations, disaster drills become pro forma and have no similarity to real or even projected and predicted disasters. The World Trade Center disaster on 11 September 2001 provides new information, and points out new threats, new information systems, new communication opportunities, and new detection methodologies. It is time for leaders of medicine to re-examine their approaches to disaster preparedness.

Effects of duty-cycled passive acoustic recordings on detecting the presence of beaked whales in the northwest Atlantic.

PubMed

Stanistreet, Joy E; Nowacek, Douglas P; Read, Andrew J; Baumann-Pickering, Simone; Moors-Murphy, Hilary B; Van Parijs, Sofie M

2016-07-01

This study investigated the effects of using duty-cycled passive acoustic recordings to monitor the daily presence of beaked whale species at three locations in the northwest Atlantic. Continuous acoustic records were subsampled to simulate duty cycles of 50%, 25%, and 10% and cycle period durations from 10 to 60 min. Short, frequent listening periods were most effective for assessing the daily presence of beaked whales. Furthermore, subsampling at low duty cycles led to consistently greater underestimation of Mesoplodon species than either Cuvier's beaked whales or northern bottlenose whales, leading to a potential bias in estimation of relative species occurrence.

System and method for bidirectional flow and controlling fluid flow in a conduit

DOEpatents

Ortiz, Marcos German

1999-01-01

A system for measuring bidirectional flow, including backflow, of fluid in a conduit. The system utilizes a structural mechanism to create a pressure differential in the conduit. Pressure sensors are positioned upstream from the mechanism, at the mechanism, and downstream from the mechanism. Data from the pressure sensors are transmitted to a microprocessor or computer, and pressure differential detected between the pressure sensors is then used to calculate the backflow. Control signals may then be generated by the microprocessor or computer to shut off valves located in the conduit, upon the occurrence of backflow, or to control flow, total material dispersed, etc. in the conduit.

FADO: a statistical method to detect favored or avoided distances between occurrences of motifs using the Hawkes' model.

PubMed

Gusto, Gaelle; Schbath, Sophie

2005-01-01

We propose an original statistical method to estimate how the occurrences of a given process along a genome, genes or motifs for instance, may be influenced by the occurrences of a second process. More precisely, the aim is to detect avoided and/or favored distances between two motifs, for instance, suggesting possible interactions at a molecular level. For this, we consider occurrences along the genome as point processes and we use the so-called Hawkes' model. In such model, the intensity at position t depends linearly on the distances to past occurrences of both processes via two unknown profile functions to estimate. We perform a non parametric estimation of both profiles by using B-spline decompositions and a constrained maximum likelihood method. Finally, we use the AIC criterion for the model selection. Simulations show the excellent behavior of our estimation procedure. We then apply it to study (i) the dependence between gene occurrences along the E. coli genome and the occurrences of a motif known to be part of the major promoter for this bacterium, and (ii) the dependence between the yeast S. cerevisiae genes and the occurrences of putative polyadenylation signals. The results are coherent with known biological properties or previous predictions, meaning this method can be of great interest for functional motif detection, or to improve knowledge of some biological mechanisms.

Occurrence of pharmaceuticals, hormones, and organic wastewater compounds in Pennsylvania waters, 2006-09

USGS Publications Warehouse

Reif, Andrew G.; Crawford, J. Kent; Loper, Connie A.; Proctor, Arianne; Manning, Rhonda; Titler, Robert

2012-01-01

Concern over the presence of contaminants of emerging concern, such as pharmaceutical compounds, hormones, and organic wastewater compounds (OWCs), in waters of the United States and elsewhere is growing. Laboratory techniques developed within the last decade or new techniques currently under development within the U.S. Geological Survey now allow these compounds to be measured at concentrations in nanograms per liter. These new laboratory techniques were used in a reconnaissance study conducted by the U.S. Geological Survey, in cooperation with the Pennsylvania Department of Environmental Protection, to determine the occurrence of contaminants of emerging concern in streams, streambed sediment, and groundwater of Pennsylvania. Compounds analyzed for in the study are pharmaceuticals (human and veterinary drugs), hormones (natural and synthetic), and OWCs (detergents, fragrances, pesticides, industrial compounds, disinfectants, polycyclic aromatic hydrocarbons, fire retardants and plasticizers). Reconnaissance sampling was conducted from 2006 to 2009 to identify contaminants of emerging concern in (1) groundwater from wells used to supply livestock, (2) streamwater upstream and downstream from animal feeding operations, (3) streamwater upstream from and streamwater and streambed sediment downstream from municipal wastewater effluent discharges, (4) streamwater from sites within 5 miles of drinking-water intakes, and (5) streamwater and streambed sediment where fish health assessments were conducted. Of the 44 pharmaceutical compounds analyzed in groundwater samples collected in 2006 from six wells used to supply livestock, only cotinine (a nicotine metabolite) and the antibiotics tylosin and sulfamethoxazole were detected. The maximum concentration of any contaminant of emerging concern was 24 nanograms per liter (ng/L) for cotinine, and was detected in a groundwater sample from a Lebanon County, Pa., well. Seven pharmaceutical compounds including acetaminophen, caffeine, carbamazepine, and the four antibiotics tylosin, sulfadimethoxine, sulfamethoxazole, and oxytetracycline were detected in streamwater samples collected in 2006 from six paired stream sampling sites located upstream and downstream from animal-feeding operations. The highest reported concentration of these seven compounds was for the antibiotic sulfamethoxazole (157 ng/L), in a sample from the downstream site on Snitz Creek in Lancaster County, Pa. Twenty-one pharmaceutical compounds were detected in streamwater samples collected in 2006 from five paired stream sampling sites located upstream or downstream from a municipal wastewater-effluent-discharge site. The most commonly detected compounds and maximum concentrations were the anticonvulsant carbamazepine, 276 ng/L; the antihistamine diphenhydramine, 135 ng/L; and the antibiotics ofloxacin, 329 ng/L; sulfamethoxazole, 1,340 ng/L; and trimethoprim, 256 ng/L. A total of 51 different contaminants of emerging concern were detected in streamwater samples collected from 2007 through 2009 at 13 stream sampling sites located downstream from a wastewater-effluent-discharge site. The concentrations and numbers of compounds detected were higher in stream sites downstream from a wastewater-effluent-discharge site than in stream sites upstream from a wastewater-effluent-discharge site. This finding indicates that wastewater-effluent discharges are a source of contaminants of emerging concern; these contaminants were present more frequently in the streambed-sediment samples than in streamwater samples. Antibiotic compounds were often present in both the streamwater and streambed-sediment samples, but many OWCs were present exclusively in the streambed-sediment samples. Compounds with endocrine disrupting potential including detergent metabolites, pesticides, and flame retardants, were present in the streamwater and streambed-sediment samples. Killinger Creek, a stream where wastewater-effluent discharges contribute a large percentage of the total flow, stands out as a stream with particularly high numbers of compounds detected and detected at the highest concentrations measured in the reconnaissance sampling. Nineteen contaminants of emerging concern were detected in streamwater samples collected quarterly from 2007 through 2009 at 27 stream sites within 5 miles of a drinking-water intake. The number of contaminants and the concentrations detected at the stream sites within 5 miles of drinking-water intakes were generally very low (concentrations less than 50 ng/L), much lower than those at sites downstream from a wastewater-effluent discharge. The most commonly detected compounds and maximum concentrations were caffeine, 517 ng/L; carbamazepine, 95 ng/L; sulfamethoxazole, 146 ng/L; and estrone, 3.15 ng/L. The concentrations and frequencies of detection of some of the contaminants of emerging concern appear to vary by season, which could be explained by compound use, flow regime, or differences in degradation rates. Concentrations of some contaminants were associated with lower flows as a result of decreased in-stream dilution of wastewater effluents or other contamination sources. Twenty-two contaminants of emerging concern were detected once each in streamwater samples collected in 2007 and 2008 from 16 fish-health stream sites located statewide. The highest concentrations were for the OWCs, including flame retardants tri(2-butoxyethyl)phosphate (604 ng/L) and tri(2-chloroethyl)phosphate (272 ng/L) and the fragrance isoquinoline (330 ng/L). Far fewer numbers of contaminants of emerging concern were detected at the fish-health sites than at the wastewater-effluent-discharge sites. Most of the fish-health sites were not located directly downstream from a wastewater-effluent discharge, but there were multiple wastewater-effluent discharges in the drainage basins upstream from the sampling sites. No distinct pattern of contaminant occurrence could be discerned for the fish-health stream sites

Location characteristics of early gastric cancer treated with endoscopic submucosal dissection.

PubMed

Kang, Dae Hwan; Choi, Cheol Woong; Kim, Hyung Wook; Park, Su Bum; Kim, Su Jin; Nam, Hyeong Seok; Ryu, Dae Gon

2017-11-01

The timely detection of early gastric cancer (EGC) is important in performing endoscopic submucosal dissection (ESD). We attempted to determine the location characteristics of regions where EGC is frequently detected and analyzed the EGC characteristics associated with that location. We retrospectively reviewed the medical records of patients with EGC treated by ESD between November 2008 and August 2016. We retrospectively investigated and analyzed 647 EGC lesions. The patients' mean age was 66.7 ± 10.8 years. The patient population was predominantly male (77.1%, 499/647). A well-to-moderately differentiated carcinoma was observed in 97.2% of patients. The common site of carcinoma occurrence was the lower part of the stomach (the antrum and lower third of body, 89.6%). Among the stomach hemispheres, the lesser curvature side was the most frequent site of EGC (43.9%). The posterior side of EGC was more frequent than anterior side of EGC (20.4 vs. 15.6%, respectively). Submucosal invasive EGC was more frequent in the mid-to-upper parts of stomach than lower part of stomach (odds ratio 1.919; confidence interval 1.014-3.623; p = 0.045). Most EGCs that are resectable with ESD were found in the lower part and in the lesser curvature of the stomach. The submucosal invasive EGC was more frequent in the mid-to-upper part of stomach.

Foraging in the Darkness of the Southern Ocean: Influence of Bioluminescence on a Deep Diving Predator

PubMed Central

Vacquié-Garcia, Jade; Royer, François; Dragon, Anne-Cécile; Viviant, Morgane; Bailleul, Frédéric; Guinet, Christophe

2012-01-01

How non-echolocating deep diving marine predators locate their prey while foraging remains mostly unknown. Female southern elephant seals (SES) (Mirounga leonina) have vision adapted to low intensity light with a peak sensitivity at 485 nm. This matches the wavelength of bioluminescence produced by a large range of marine organisms including myctophid fish, SES’s main prey. In this study, we investigated whether bioluminescence provides an accurate estimate of prey occurrence for SES. To do so, four SES were satellite-tracked during their post-breeding foraging trip and were equipped with Time-Depth-Recorders that also recorded light levels every two seconds. A total of 3386 dives were processed through a light-treatment model that detected light events higher than ambient level, i.e. bioluminescence events. The number of bioluminescence events was related to an index of foraging intensity for SES dives deep enough to avoid the influence of natural ambient light. The occurrence of bioluminescence was found to be negatively related to depth both at night and day. Foraging intensity was also positively related to bioluminescence both during day and night. This result suggests that bioluminescence likely provides SES with valuable indications of prey occurrence and might be a key element in predator-prey interactions in deep-dark marine environments. PMID:22952706

Differential accumulation of polyphenolics in black bean genotypes grown in four environments.

PubMed

Marles, M A Susan; Balasubramanian, Parthiba; Bett, Kirstin E

2010-06-09

Environmental effects on polyphenolic composition of pigmented seed coat tissue were examined in four black bean genotypes, grown in four locations in Canada. Genotype was the most significant determinant in the phenotypic expression of flavonoid traits across four locations (p < 0.0001). The genotype x environment interaction was not significantly different for anthocyanin or extractable condensed tannin (syn. proanthocyanidin) but was significant for the bound anthocyanidin concentration (p < 0.05). One trace metabolite, (-)-epicatechin, was identified, but no flavonols were detected in the seed coats. Sequestration of anthocyanin in the seed coat was genotype-dependent and predominantly consisted of delphinidin with lesser amounts of petunidin and malvidin. Pigment sequestration in the two integument layers of the seed coat appeared to be mutually exclusive across all genotypes in terms of the pigment chemical character. Tissue-specific accumulation of extractable and bound anthocyanin in the outer integument was observed. The inner integument was devoid of anthocyanin, and the pigment consisted solely of condensed tannin inclusions. The occurrence of condensed tannin together with anthocyanin pigments, whether extractable or bound either by oxidation or by cross-linking, influenced the visual uniformity of seeds of bean cultivars. The co-occurrence of these compounds could have an effect on postharvest appearance during storage, on canning quality, and on the dietary effects of the putative functional food profile in the black bean market class.

Predicting species distributions from checklist data using site-occupancy models

USGS Publications Warehouse

Kery, M.; Gardner, B.; Monnerat, C.

2010-01-01

Aim: (1) To increase awareness of the challenges induced by imperfect detection, which is a fundamental issue in species distribution modelling; (2) to emphasize the value of replicate observations for species distribution modelling; and (3) to show how 'cheap' checklist data in faunal/floral databases may be used for the rigorous modelling of distributions by site-occupancy models. Location: Switzerland. Methods: We used checklist data collected by volunteers during 1999 and 2000 to analyse the distribution of the blue hawker, Aeshna cyanea (Odonata, Aeshnidae), a common dragonfly in Switzerland. We used data from repeated visits to 1-ha pixels to derive 'detection histories' and apply site-occupancy models to estimate the 'true' species distribution, i.e. corrected for imperfect detection. We modelled blue hawker distribution as a function of elevation and year and its detection probability of elevation, year and season. Results: The best model contained cubic polynomial elevation effects for distribution and quadratic effects of elevation and season for detectability. We compared the site-occupancy model with a conventional distribution model based on a generalized linear model, which assumes perfect detectability (p = 1). The conventional distribution map looked very different from the distribution map obtained using site-occupancy models that accounted for the imperfect detection. The conventional model underestimated the species distribution by 60%, and the slope parameters of the occurrence-elevation relationship were also underestimated when assuming p = 1. Elevation was not only an important predictor of blue hawker occurrence, but also of the detection probability, with a bell-shaped relationship. Furthermore, detectability increased over the season. The average detection probability was estimated at only 0.19 per survey. Main conclusions: Conventional species distribution models do not model species distributions per se but rather the apparent distribution, i.e. an unknown proportion of species distributions. That unknown proportion is equivalent to detectability. Imperfect detection in conventional species distribution models yields underestimates of the extent of distributions and covariate effects that are biased towards zero. In addition, patterns in detectability will erroneously be ascribed to species distributions. In contrast, site-occupancy models applied to replicated detection/non-detection data offer a powerful framework for making inferences about species distributions corrected for imperfect detection. The use of 'cheap' checklist data greatly enhances the scope of applications of this useful class of models. ?? 2010 Blackwell Publishing Ltd.

Monitoring of Thermal Protection Systems and MMOD using Robust Self-Organizing Optical Fiber Sensing Networks

NASA Technical Reports Server (NTRS)

Richards, Lance

2014-01-01

The general aim of this work is to develop and demonstrate a prototype structural health monitoring system for thermal protection systems that incorporates piezoelectric acoustic emission (AE) sensors to detect the occurrence and location of damaging impacts, such as those from Micrometeoroid Orbital Debris (MMOD). The approach uses an optical fiber Bragg grating (FBG) sensor network to evaluate the effect of detected damage on the thermal conductivity of the TPS material. Following detection of an impact, the TPS would be exposed to a heat source, possibly the sun, and the temperature distribution on the inner surface in the vicinity of the impact measured by the FBG network. A similar procedure could also be carried out as a screening test immediately prior to re-entry. The implications of any detected anomalies in the measured temperature distribution will be evaluated for their significance in relation to the performance of the TPS during reentry. Such a robust TPS health monitoring system would ensure overall crew safety throughout the mission, especially during reentry.

Detecting changes in dynamic and complex acoustic environments

PubMed Central

Boubenec, Yves; Lawlor, Jennifer; Górska, Urszula; Shamma, Shihab; Englitz, Bernhard

2017-01-01

Natural sounds such as wind or rain, are characterized by the statistical occurrence of their constituents. Despite their complexity, listeners readily detect changes in these contexts. We here address the neural basis of statistical decision-making using a combination of psychophysics, EEG and modelling. In a texture-based, change-detection paradigm, human performance and reaction times improved with longer pre-change exposure, consistent with improved estimation of baseline statistics. Change-locked and decision-related EEG responses were found in a centro-parietal scalp location, whose slope depended on change size, consistent with sensory evidence accumulation. The potential's amplitude scaled with the duration of pre-change exposure, suggesting a time-dependent decision threshold. Auditory cortex-related potentials showed no response to the change. A dual timescale, statistical estimation model accounted for subjects' performance. Furthermore, a decision-augmented auditory cortex model accounted for performance and reaction times, suggesting that the primary cortical representation requires little post-processing to enable change-detection in complex acoustic environments. DOI: http://dx.doi.org/10.7554/eLife.24910.001 PMID:28262095

Cyanobacteria and Cyanotoxins Occurrence and Removal from Five High-Risk Conventional Treatment Drinking Water Plants.

PubMed

Szlag, David C; Sinclair, James L; Southwell, Benjamin; Westrick, Judy A

2015-06-12

An environmental protection agency EPA expert workshop prioritized three cyanotoxins, microcystins, anatoxin-a, and cylindrospermopsin (MAC), as being important in freshwaters of the United States. This study evaluated the prevalence of potentially toxin producing cyanobacteria cell numbers relative to the presence and quantity of the MAC toxins in the context of this framework. Total and potential toxin producing cyanobacteria cell counts were conducted on weekly raw and finished water samples from utilities located in five US states. An Enzyme-Linked Immunosorbant Assay (ELISA) was used to screen the raw and finished water samples for microcystins. High-pressure liquid chromatography with a photodiode array detector (HPLC/PDA) verified microcystin concentrations and quantified anatoxin-a and cylindrospermopsin concentrations. Four of the five utilities experienced cyanobacterial blooms in their raw water. Raw water samples from three utilities showed detectable levels of microcystins and a fourth utility had detectable levels of both microcystin and cylindrospermopsin. No utilities had detectable concentrations of anatoxin-a. These conventional plants effectively removed the cyanobacterial cells and all finished water samples showed MAC levels below the detection limit by ELISA and HPLC/PDA.

Occurrence of clostridia in commercially available curry roux.

PubMed

Fujisawa, T; Aikawa, K; Takahashi, T; Yamai, S; Ueda, S

2001-12-01

The occurrence of clostridia was investigated in a total of 60 commercially available curry roux samples. Clostridia were isolated from 37 (62%) samples, and Clostridium perfringens was isolated from 7 (12%) samples. The isolates of C. perfringens did not produce enterotoxin. The frequency of occurrence was higher by the enrichment broth culture detection method than by the agar plate or pouch method. These findings suggest that enrichment broth culture is necessary for the detection of clostridia.

Detecting and Cataloging Global Explosive Volcanism Using the IMS Infrasound Network

NASA Astrophysics Data System (ADS)

Matoza, R. S.; Green, D. N.; LE Pichon, A.; Fee, D.; Shearer, P. M.; Mialle, P.; Ceranna, L.

2015-12-01

Explosive volcanic eruptions are among the most powerful sources of infrasound observed on earth, with recordings routinely made at ranges of hundreds to thousands of kilometers. These eruptions can also inject large volumes of ash into heavily travelled aviation corridors, thus posing a significant societal and economic hazard. Detecting and counting the global occurrence of explosive volcanism helps with progress toward several goals in earth sciences and has direct applications in volcanic hazard mitigation. This project aims to build a quantitative catalog of global explosive volcanic activity using the International Monitoring System (IMS) infrasound network. We are developing methodologies to search systematically through IMS infrasound array detection bulletins to identify signals of volcanic origin. We combine infrasound signal association and source location using a brute-force, grid-search, cross-bearings approach. The algorithm corrects for a background prior rate of coherent infrasound signals in a global grid. When volcanic signals are identified, we extract metrics such as location, origin time, acoustic intensity, signal duration, and frequency content, compiling the results into a catalog. We are testing and validating our method on several well-known case studies, including the 2009 eruption of Sarychev Peak, Kuriles, the 2010 eruption of Eyjafjallajökull, Iceland, and the 2015 eruption of Calbuco, Chile. This work represents a step toward the goal of integrating IMS data products into global volcanic eruption early warning and notification systems. Additionally, a better characterization of volcanic signal detection helps improve understanding of operational event detection, discrimination, and association capabilities of the IMS network.

Ecological Patterns Among Bacteria and Microbial Eukaryotes Derived from Network Analyses in a Low-Salinity Lake.

PubMed

Jones, Adriane Clark; Hambright, K David; Caron, David A

2018-05-01

Microbial communities are comprised of complex assemblages of highly interactive taxa. We employed network analyses to identify and describe microbial interactions and co-occurrence patterns between microbial eukaryotes and bacteria at two locations within a low salinity (0.5-3.5 ppt) lake over an annual cycle. We previously documented that the microbial diversity and community composition within Lake Texoma, southwest USA, were significantly affected by both seasonal forces and a site-specific bloom of the harmful alga, Prymnesium parvum. We used network analyses to answer ecological questions involving both the bacterial and microbial eukaryotic datasets and to infer ecological relationships within the microbial communities. Patterns of connectivity at both locations reflected the seasonality of the lake including a large rain disturbance in May, while a comparison of the communities between locations revealed a localized response to the algal bloom. A network built from shared nodes (microbial operational taxonomic units and environmental variables) and correlations identified conserved associations at both locations within the lake. Using network analyses, we were able to detect disturbance events, characterize the ecological extent of a harmful algal bloom, and infer ecological relationships not apparent from diversity statistics alone.

Factors related to occurrence and distribution of selected bacterial and protozoan pathogens in Pennsylvania streams

USGS Publications Warehouse

Duris, Joseph W.; Reif, Andrew G.; Donna A. Crouse,; Isaacs, Natasha M.

2013-01-01

The occurrence and distribution of fecal indicator bacteria (FIB) and bacterial and protozoan pathogens are controlled by diverse factors. To investigate these factors in Pennsylvania streams, 217 samples were collected quarterly from a 27-station water-quality monitoring network from July 2007 through August 2009. Samples were analyzed for concentrations of Escherichia coli (EC) and enterococci (ENT) indicator bacteria, concentrations of Cryptosporidium oocysts and Giardia cysts, and the presence of four genes related to pathogenic types of EC (eaeA, stx2, stx1, rfbO157) plus three microbial source tracking (MST) gene markers that are also associated with pathogenic ENT and EC (esp, LTIIa, STII). Water samples were concurrently analyzed for basic water chemistry, physical measures of water quality, nutrients, metals, and a suite of 79 organic compounds that included hormones, pharmaceuticals, and antibiotics. For each sample location, stream discharge was measured by using standardized methods at the time of sample collection, and ancillary sample site information, such as land use and geological characteristics, was compiled. Samples exceeding recreational water quality criteria were more likely to contain all measured pathogen genes but notCryptosporidium or Giardia (oo)cysts. FIB and Giardia density and frequency of eaeA gene occurrence were significantly related to season. When discharge at a sampling location was high (>75th percentile of daily mean discharge), there were greater densities of FIB and Giardia, and the stx2, rfbO157, STII, and esp genes were found more frequently than at other discharge conditions. Giardia occurrence was likely related to nonpoint sources, which are highly influential during seasonal overland transport resulting from snowmelt and elevated precipitation in late winter and spring in Pennsylvania. When MST markers of human, swine, or bovine origin were present, samples more frequently carried the eaeA, stx2, stx1, and rfbO157 genes, but no genes were related exclusively to an individual MST marker. The human source pharmaceuticals (HSPs) acetaminophen and caffeine were correlated with Giardia, and the presence of HSPs proved to be more useful than MST markers in distinguishing the occurrence of Giardia. The HSPs caffeine and carbamazepine were correlated with the sum total of pathogen genes detected in a sample, demonstrating the value of using HSPs as an indicator of fecally derived pathogens. Sites influenced by urban land use with less forest were more likely to have greater FIB and Giardia densities and sum of the array of pathogen genes. Sites dominated by shallow carbonate bedrock in the upstream catchment were likely to have greater FIB densities and higher sum totals of pathogen genes but no correlation with Giardia detection. Our study provides a range of specific environmental, chemical, geologic, and land-use variables related to occurrence and distribution of FIB and selected bacterial and protozoan pathogens in Pennsylvania streams. The information presented could be useful for resource managers in understanding bacterial and protozoan pathogen occurrence and their relation to fecal indicator bacteria in similar settings.

Occurrence of select perfluoroalkyl substances at U.S. Air Force aqueous film-forming foam release sites other than fire-training areas: Field-validation of critical fate and transport properties.

PubMed

Anderson, R Hunter; Long, G Cornell; Porter, Ronald C; Anderson, Janet K

2016-05-01

The use of aqueous film-forming foam (AFFF) to extinguish hydrocarbon-based fires is recognized as a significant source of environmental poly- and perfluoroalkyl substances (PFASs). Although the occurrence of select PFASs in soil and groundwater at former fire-training areas (FTAs) at military installations operable since 1970 has been consistently confirmed, studies reporting the occurrence of PFASs at other AFFF-impacted sites (e.g. emergency response locations, AFFF lagoons, hangar-related AFFF storage tanks and pipelines, and fire station testing and maintenance areas) are largely missing from the literature. Further, studies have mostly focused on a single site (i.e., FTAs at military installations) and, thus, lack a comparison of sites with diverse AFFF release history. Therefore, the purpose of this investigation was to evaluate select PFAS occurrence at non-FTA sites on active U.S. Air Force installations with historic AFFF use of varying magnitude. Concentrations of fifteen perfluoroalkyl acids (PFAAs) and perfluorooctane sulfonamide (PFOSA), an important PFOS precursor, were measured from several hundred samples among multiple media (i.e., surface soil, subsurface soil, sediment, surface water, and groundwater) collected from forty AFFF-impacted sites across ten installations between March and September 2014, representing one of the most comprehensive datasets on environmental PFAS occurrence to date. Differences in detection frequencies and observed concentrations due to AFFF release volume are presented along with rigorous data analyses that quantitatively demonstrate phase-dependent (i.e., solid-phase vs aqueous-phase) differences in the chemical signature as a function of carbon chain-length and in situ PFOS (and to a slightly lesser extent PFHxS) formation, presumably due to precursor biotransformation. Published by Elsevier Ltd.

Pharmaceuticals and personal care products (PPCPs) and endocrine disrupting chemicals (EDCs) in stormwater canals and Bayou St. John in New Orleans, Louisiana, USA.

PubMed

Boyd, Glen R; Palmeri, Jordan M; Zhang, Shaoyuan; Grimm, Deborah A

2004-10-15

Samples were collected from two stormwater canals and a recreational urban waterway known as Bayou St. John in New Orleans, Louisiana, USA and analyzed for a range of pharmaceuticals and personal care products (PPCPs) and endocrine disrupting chemicals (EDCs). Concentrations of 7 PPCPs and EDCs were measured by a method that provides for simultaneous extraction and quantification of the following compounds: clofibric acid, naproxen, ibuprofen, fluoxetine, clorophene, triclosan, bisphenol A. The method also was used as an indicator of the occurrence of estrogenic compounds by targeting estrone and 17beta-estradiol. The two canals (Orleans and London) are used to drain a portion of the city's stormwater directly into the Mississippi River or Lake Pontchartrain. Bayou St. John is located between the two canals and supplied with water from Lake Pontchartrain. Results from the 6-month sampling period indicated the following concentration ranges for the two stormwater canals: naproxen (ND - 145 ng/l), ibuprofen (ND - 674 ng/l), triclosan (ND - 29 ng/l) and bisphenol A (1.9-158 ng/l). Concentrations of these target analytes increased with cumulative rainfall. For bayou waters, only naproxen (2.1-4.8 ng/l) and bisphenol A (0.9-44 ng/l) were detected. Estrone was detected but determined non-quantifiable for multiple sampling events at the 3 sites. None of the other target analytes (clofibric acid, fluoxetine, clorophene, and 17beta-estradiol) were detected above their method detection levels. Results of this study demonstrate the occurrence of PPCPs and EDCs in New Orleans stormwater canals and Bayou St. John. Results also demonstrate the use of this analytical technique as an indicator of non-point source sewage contamination in New Orleans stormwater canals.

Occurrence of Pepper Mild Mottle Virus (PMMoV) in Groundwater from a Karst Aquifer System in the Yucatan Peninsula, Mexico.

PubMed

Rosiles-González, Gabriela; Ávila-Torres, Gerardo; Moreno-Valenzuela, Oscar A; Acosta-González, Gilberto; Leal-Bautista, Rosa María; Grimaldo-Hernández, Cinthya D; Brown, Judith K; Chaidez-Quiroz, Cristóbal; Betancourt, Walter Q; Gerba, Charles P; Hernández-Zepeda, Cecilia

2017-12-01

The Yucatan Peninsula of Mexico hosts a karst aquifer system that is the only source of freshwater for the area; however, it is vulnerable to human-mediated contamination. Pepper mild mottle virus (PMMoV) is one of the most abundant RNA viruses associated with human feces, making it a viable indicator for tracking fecal pollution in aquatic environments, including groundwater. In this study, groundwater samples collected from a karst aquifer from fresh and brackish water locations were analyzed for fecal indicator bacteria, somatic and male F+ specific coliphages, and PMMoV during the rainy and dry seasons. Total coliform bacteria were detected at all sites, whereas Escherichia coli were found at relatively low levels <40 MPN/100 ml. The highest average concentrations of somatic and male F+ specific coliphages were 920 and 330 plaque forming units per 100 ml, respectively, detected in freshwater during the rainy season. PMMoV RNA was detected in 85% of the samples with gene sequences sharing 99-100% of nucleotide identity with PMMoV sequences available in GenBank. Quantification of PMMoV genome copies (GC) by quantitative real-time PCR indicated concentrations ranging from 1.7 × 10 1 to 1.0 × 10 4 GC/L, with the highest number of GC detected during the rainy season. No significant correlation was observed between PMMoV occurrence by season or water type (p > 0.05). Physicochemical and indicator bacteria were not correlated with PMMoV concentrations. The abundance and prevalence of PMMoV in the karst aquifer may reflect its environmental persistence and its potential as a fecal indicator in this karst aquifer system.

Occurrence of antimicrobial agents, drug-resistant bacteria, and genes in the sewage-impacted Vistula River (Poland).

PubMed

Giebułtowicz, Joanna; Tyski, Stefan; Wolinowska, Renata; Grzybowska, Wanda; Zaręba, Tomasz; Drobniewska, Agata; Wroczyński, Piotr; Nałęcz-Jawecki, Grzegorz

2018-02-01

Antimicrobial agents (antimicrobials) are a group of therapeutic and hygienic agents that either kill microorganisms or inhibit their growth. Their occurrence in surface water may reveal harmful effects on aquatic biota and challenge microbial populations. Recently, there is a growing concern over the contamination of surface water with both antimicrobial agents and multidrug-resistant bacteria. The aim of the study was the determination of the presence of selected antimicrobials at specific locations of the Vistula River (Poland), as well as in tap water samples originating from the Warsaw region. Analysis was performed using the liquid chromatography-electrospray ionization-tandem mass spectrometry method. In addition, the occurrence of drug-resistant bacteria and resistance genes was determined using standard procedures. This 2-year study is the first investigation of the simultaneous presence of antimicrobial agents, drug-resistant bacteria, and genes in Polish surface water. In Poland, relatively high concentrations of macrolides are observed in both surface and tap water. Simultaneous to the high macrolide levels in the environment, the presence of the erm B gene, coding the resistance to macrolides, lincosamides, and streptogramin, was detected in almost all sampling sites. Another ubiquitous gene was int1, an element of the 5'-conserved segment of class 1 integrons that encode site-specific integrase. Also, resistant isolates of Enterococcus faecium and Enterococcus faecalis and Gram-negative bacteria were recovered. Multidrug-resistant bacteria isolates of Gram-negative and Enterococcus were also detected. The results show that wastewater treatment plants (WWTP) are the main source of most antimicrobials, resistant bacteria, and genes in the aquatic environment, probably due to partial purification during wastewater treatment processes.

Spatial distribution of bisphenol S in surface water and human serum from Yangtze River watershed, China: Implications for exposure through drinking water.

PubMed

Wan, Yanjian; Xia, Wei; Yang, Shunyi; Pan, Xinyun; He, Zhenyu; Kannan, Kurunthachalam

2018-05-01

Bisphenol S (BPS) is an emerging environmental contaminant. The occurrence of this compound in humans and the environment is not well described. In this study, 120 surface water samples and 240 human serum samples were collected along the Yangtze River in 2015 for the determination of the occurrence of BPS. Surface water and human serum samples were extracted by solid phase extraction and liquid-liquid extraction, respectively, and analyzed by ultra-high performance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS). BPS was detected in all river water samples at concentrations that ranged from 0.18 to 14.9 ng/L (median: 0.98 ng/L), with higher concentrations in spring than summer. The median estimated daily intake (EDI) of BPS through water ingestion by infants in spring and summer was 0.12 and 0.06 ng/kg body weight (bw)/day, respectively. BPS was detected in human serum with the highest concentrations in samples from Nanjing (median: 0.65 ng/mL, maximum: 169 ng/mL) among the four cities studied. No significant gender related difference in BPS concentrations was observed in human sera, while higher concentrations were found in younger individuals than elderly. The EDI of BPS calculated based on serum concentrations of adults in Nanjing was 22.8 ng/kg bw/day. Ingestion of water accounted for <1% of the total BPS intake by the Chinese population. This is the first report of the occurrence of BPS in water from the Yangtze River and human serum from several cities located along this river in China. Copyright © 2018 Elsevier Ltd. All rights reserved.

The molecular basis for development of proinflammatory autoantibodies to progranulin.

PubMed

Thurner, Lorenz; Fadle, Natalie; Regitz, Evi; Kemele, Maria; Klemm, Philipp; Zaks, Marina; Stöger, Elisabeth; Bette, Birgit; Carbon, Gabi; Zimmer, Vincent; Assmann, Gunter; Murawski, Niels; Kubuschok, Boris; Held, Gerhard; Preuss, Klaus-Dieter; Pfreundschuh, Michael

2015-07-01

Recently we identified in a wide spectrum of autoimmune diseases frequently occurring proinflammatory autoantibodies directed against progranulin, a direct inhibitor of TNFR1 & 2 and of DR3. In the present study we investigated the mechanisms for the breakdown of self-tolerance against progranulin. Isoelectric focusing identified a second, differentially electrically charged progranulin isoform exclusively present in progranulin-antibody-positive patients. Alkaline phosphatase treatment revealed this additional progranulin isoform to be hyperphosphorylated. Subsequently Ser81, which is located within the epitope region of progranulin-antibodies, was identified as hyperphosphorylated serine residue by site directed mutagenesis of candidate phosphorylation sites. Hyperphosphorylated progranulin was detected exclusively in progranulin-antibody-positive patients during the courses of their diseases. The occurrence of hyperphosphorylated progranulin preceded seroconversions of progranulin-antibodies, indicating adaptive immune response. Utilizing panels of kinase and phosphatase inhibitors, PKCβ1 was identified as the relevant kinase and PP1 as the relevant phosphatase for phosphorylation and dephosphorylation of Ser81. In contrast to normal progranulin, hyperphosphorylated progranulin interacted exclusively with inactivated (pThr320) PP1, suggesting inactivated PP1 to cause the detectable occurrence of phosphorylated Ser81 PGRN. Investigation of possible functional alterations of PGRN due to Ser81 phosphorylation revealed, that hyperphosphorylation prevents the interaction and thus direct inhibition of TNFR1, TNFR2 and DR3, representing an additional direct proinflammatory effect. Finally phosphorylation of Ser81 PGRN alters the conversion pattern of PGRN. In conclusion, inactivated PP1 induces hyperphosphorylation of progranulin in a wide spectrum of autoimmune diseases. This hyperphosphorylation prevents direct inhibition of TNFR1, TNFR2 and DR3 by PGRN, alters the conversion of PGRN, and is strongly associated with the occurrence of neutralizing, proinflammatory PGRN-antibodies, indicating immunogenicity of this alternative secondary modification. Copyright © 2015 Elsevier Ltd. All rights reserved.

Occurrence of Organic Wastewater Compounds in Selected Surface-Water Supplies, Triangle Area of North Carolina, 2002-2005

USGS Publications Warehouse

Giorgino, M.J.; Rasmussen, R.B.; Pfeifle, C.M .

2007-01-01

Selected organic wastewater compounds, such as household, industrial, and agricultural-use compounds, sterols, pharmaceuticals, and antibiotics, were measured at eight sites classified as drinking-water supplies in the Triangle Area of North Carolina. From October 2002 through July 2005, seven of the sites were sampled twice, and one site was sampled 28 times, for a total of 42 sets of environmental samples. Samples were analyzed for as many as 126 compounds using three laboratory analytical methods. These methods were developed by the U.S. Geological Survey to detect low levels (generally less than or equal to 1.0 microgram per liter) of the target compounds in filtered water. Because analyses were conducted on filtered samples, the results presented in this report may not reflect the total concentration of organic wastewater compounds in the waters that were sampled. Various quality-control samples were used to quality assure the results in terms of method performance and possible laboratory or field contamination. Of the 108 organic wastewater compounds that met method performance criteria, 24 were detected in at least one sample during the study. These 24 compounds included 3 pharmaceutical compounds, 6 fire retardants and plasticizers, 3 antibiotics, 3 pesticides, 6 fragrances and flavorants, 1 disinfectant, and 2 miscellaneous-use compounds, all of which likely originated from a variety of domestic, industrial, and agricultural sources. The 10 most frequently detected compounds included acetyl-hexamethyl tetrahydronaphthalene and hexahydro-hexamethyl cyclopentabenzopyran (synthetic musks that are widely used in personal-care products and are known endocrine disruptors); tri(2-chloroethyl) phosphate, tri(dichloroisopropyl) phosphate, and tributyl phosphate (fire retardants); metolachlor (herbicide); caffeine (nonprescription stimulant); cotinine (metabolite of nicotine); acetaminophen (nonprescription analgesic); and sulfamethoxazole (prescription antibiotic). The occurrence and distribution of organic wastewater compounds varied considerably among sampling sites, but at least one compound was detected at every location. The most organic wastewater compounds (19) were detected at the Neuse River above U.S. 70 at Smithfield, where two-thirds of the total number of samples were collected. The fewest organic wastewater compounds (1) were detected at the Eno River at Hillsborough. The detection of multiple organic wastewater compounds was common, with a median of 3.5 and as many as 12 compounds observed in individual samples. Some compounds, including acetaminophen, cotinine, tri(2-chloroethyl) phosphate, and metolachlor, were detected at numerous sites and in numerous samples, indicating that they are widely distributed in the environment. Other organic wastewater compounds, including acetyl-hexamethyl tetrahydronaphthalene and hexahydro-hexamethyl cyclopentabenzopyran, were detected in numerous samples but at only one location, indicating that sources of these compounds are more site specific. Results indicate that municipal wastewater may be a source of antibiotics and synthetic musks; however, the three sites in this study that are located downstream from wastewater discharges also receive runoff from agricultural, urban, and rural residential lands. Source identification was not an objective of this study. Concentrations of individual compounds generally were less than 0.5 microgram per liter. No concentrations exceeded Federal drinking-water standards or health advisories, nor water-quality criteria established by the State of North Carolina; however, such criteria are available for only a few of the compounds that were studied. Compared with other surface waters that have been sampled across the United States, the Triangle Area water-supply sites had fewer detections of organic wastewater compounds; however, differences in study design and analytical methods used among studies must be considered when mak

Passive acoustic monitoring to detect spawning in large-bodied catostomids

USGS Publications Warehouse

Straight, Carrie A.; Freeman, Byron J.; Freeman, Mary C.

2014-01-01

Documenting timing, locations, and intensity of spawning can provide valuable information for conservation and management of imperiled fishes. However, deep, turbid or turbulent water, or occurrence of spawning at night, can severely limit direct observations. We have developed and tested the use of passive acoustics to detect distinctive acoustic signatures associated with spawning events of two large-bodied catostomid species (River Redhorse Moxostoma carinatum and Robust Redhorse Moxostoma robustum) in river systems in north Georgia. We deployed a hydrophone with a recording unit at four different locations on four different dates when we could both record and observe spawning activity. Recordings captured 494 spawning events that we acoustically characterized using dominant frequency, 95% frequency, relative power, and duration. We similarly characterized 46 randomly selected ambient river noises. Dominant frequency did not differ between redhorse species and ranged from 172.3 to 14,987.1 Hz. Duration of spawning events ranged from 0.65 to 11.07 s, River Redhorse having longer durations than Robust Redhorse. Observed spawning events had significantly higher dominant and 95% frequencies than ambient river noises. We additionally tested software designed to automate acoustic detection. The automated detection configurations correctly identified 80–82% of known spawning events, and falsely indentified spawns 6–7% of the time when none occurred. These rates were combined over all recordings; rates were more variable among individual recordings. Longer spawning events were more likely to be detected. Combined with sufficient visual observations to ascertain species identities and to estimate detection error rates, passive acoustic recording provides a useful tool to study spawning frequency of large-bodied fishes that displace gravel during egg deposition, including several species of imperiled catostomids.

Population trends and habitat occurrence of forest birds on southern national forests, 1992-2004

Treesearch

Frank A. La Sorte; Frank R., III Thompson; Margaret K. Trani; Timothy J. Mersmann

2007-01-01

We determined population trends and habitat occurrences for bird species in 14 national forests located in the Southern Region from 1992-2004. We estimated population trends for 144 species within: 14 national forests, 10 physiographic areas, and in the Southern Region as a whole. Habitat occurrences were estimated for 114 species based on 13 forest types and four...

Evidence of recent volcanic activity on the ultraslow-spreading Gakkel ridge.

PubMed

Edwards, M H; Kurras, G J; Tolstoy, M; Bohnenstiehl, D R; Coakley, B J; Cochran, J R

2001-02-15

Seafloor spreading is accommodated by volcanic and tectonic processes along the global mid-ocean ridge system. As spreading rate decreases the influence of volcanism also decreases, and it is unknown whether significant volcanism occurs at all at ultraslow spreading rates (<1.5 cm yr(-1)). Here we present three-dimensional sonar maps of the Gakkel ridge, Earth's slowest-spreading mid-ocean ridge, located in the Arctic basin under the Arctic Ocean ice canopy. We acquired this data using hull-mounted sonars attached to a nuclear-powered submarine, the USS Hawkbill. Sidescan data for the ultraslow-spreading (approximately 1.0 cm yr(-1)) eastern Gakkel ridge depict two young volcanoes covering approximately 720 km2 of an otherwise heavily sedimented axial valley. The western volcano coincides with the average location of epicentres for more than 250 teleseismic events detected in 1999, suggesting that an axial eruption was imaged shortly after its occurrence. These findings demonstrate that eruptions along the ultraslow-spreading Gakkel ridge are focused at discrete locations and appear to be more voluminous and occur more frequently than was previously thought.

A Reverse Localization Scheme for Underwater Acoustic Sensor Networks

PubMed Central

Moradi, Marjan; Rezazadeh, Javad; Ismail, Abdul Samad

2012-01-01

Underwater Wireless Sensor Networks (UWSNs) provide new opportunities to observe and predict the behavior of aquatic environments. In some applications like target tracking or disaster prevention, sensed data is meaningless without location information. In this paper, we propose a novel 3D centralized, localization scheme for mobile underwater wireless sensor network, named Reverse Localization Scheme or RLS in short. RLS is an event-driven localization method triggered by detector sensors for launching localization process. RLS is suitable for surveillance applications that require very fast reactions to events and could report the location of the occurrence. In this method, mobile sensor nodes report the event toward the surface anchors as soon as they detect it. They do not require waiting to receive location information from anchors. Simulation results confirm that the proposed scheme improves the energy efficiency and reduces significantly localization response time with a proper level of accuracy in terms of mobility model of water currents. Major contributions of this method lie on reducing the numbers of message exchange for localization, saving the energy and decreasing the average localization response time. PMID:22666034

A reverse localization scheme for underwater acoustic sensor networks.

PubMed

Moradi, Marjan; Rezazadeh, Javad; Ismail, Abdul Samad

2012-01-01

Underwater Wireless Sensor Networks (UWSNs) provide new opportunities to observe and predict the behavior of aquatic environments. In some applications like target tracking or disaster prevention, sensed data is meaningless without location information. In this paper, we propose a novel 3D centralized, localization scheme for mobile underwater wireless sensor network, named Reverse Localization Scheme or RLS in short. RLS is an event-driven localization method triggered by detector sensors for launching localization process. RLS is suitable for surveillance applications that require very fast reactions to events and could report the location of the occurrence. In this method, mobile sensor nodes report the event toward the surface anchors as soon as they detect it. They do not require waiting to receive location information from anchors. Simulation results confirm that the proposed scheme improves the energy efficiency and reduces significantly localization response time with a proper level of accuracy in terms of mobility model of water currents. Major contributions of this method lie on reducing the numbers of message exchange for localization, saving the energy and decreasing the average localization response time.

The Meteorological Setting of Narrow Bipolar Events

NASA Astrophysics Data System (ADS)

Stanley, M. A.; Suszcynsky, D. M.; Heavner, M. J.

2003-12-01

Narrow Bipolar Events (NBEs) are an impulsive form of electrical breakdown in storms which emits strong VHF radiation. It is well known that these events can be readily detected by VHF receivers in orbit and thus may provide a highly practical means to globally monitor storm activity. However, relatively little is known about how NBEs relate to the convective phase of storms and of how good a predictor they are of severe weather events such as large hail, damaging winds, and tornadoes. On June 10, 2002, numerous energetic NBEs were detected over Kansas by the Los Alamos National Laboratory Edot array, which is primarily located in Florida. These NBEs were also detected by a VHF receiver on-board the SVN 54 GPS satellite. The NBEs were associated with severe thunderstorms which produced softball size hail exceeding 11 centimeters in diameter and a weak F0 tornado. In another case study, several F2 tornadic Florida storms were analyzed for March, 2001. Unlike the Kansas storms, the NBEs of the Florida tornadic storms were spread out over a much wider area and exhibited considerable variability in both frequency of occurrence and predominant polarity of vertical charge transfer. To further explore the significance of the NBE rate variability, we will analyze NEXRAD radar volume scans in conjunction with Edot 3-dimensional locations to better understand how NBEs correlate with the thunderstorm life-cycle.

Deriving Geomechanical Constraints from Microseismic Monitoring Demonstrated with Data from the Decatur CO2 Sequestration Site

NASA Astrophysics Data System (ADS)

Goertz-Allmann, B. P.; Oye, V.

2015-12-01

The occurrence of induced and triggered microseismicity is of increasing concern to the general public. The underlying human causes are numerous and include hydrocarbon production and geological storage of CO2. The concerns of induced seismicity are the potential hazards from large seismic events and the creation of fluid pathways. However, microseismicity is also a unique tool to gather information about real-time changes in the subsurface, a fact generally ignored by the public. The ability to detect, locate and characterize microseismic events, provides a snapshot of the stress conditions within and around a geological reservoir. In addition, data on rapid stress changes (i.e. microseismic events) can be used as input to hydro-mechanical models, often used to map fluid propagation. In this study we investigate the impact of microseismic event location accuracy using surface seismic stations in addition to downhole geophones. Due to signal-to-noise conditions and the small magnitudes inherent in microseismicity, downhole systems detect significantly more events with better precision of phase arrival times than surface networks. However, downhole systems are often limited in their ability to obtain large enough observational apertures required for accurate locations. We therefore jointly locate the largest microseismic events using surface and downhole data. This requires careful evaluation in the weighting of input data when inverting for the event location. For the smaller events only observed on the downhole geophones, we define event clusters using waveform cross-correlation methods. We apply this methodology to microseismic data collected in the Illinois Basin-Decatur Project. A previous study revealed over 10,000 events detected by the downhole sensors. In our analysis, we include up to 12 surface sensors, installed by the USGS. The weighting scheme for this assembly of data needs to take into account significant uncertainties in the near-surface velocity structure. The re-located event clusters allow an investigation of systematic spatio-temporal variations of source parameters (e.g. stress drop) and statistical parameters (e.g. b-value). We examine these observations together with injection parameters to deduce constraints on the long-term stability of the injection site.

Aqueous alteration detection in Tikhonravov crater, Mars

NASA Astrophysics Data System (ADS)

Mancarella, F.; Fonti, S.; Alemanno, G.; Orofino, V.; Blanco, A.

2018-03-01

The existence of a wet period lasting long enough to allow the development of elementary forms of life on Mars has always been a very interesting issue. Given this perspective, the research for geological markers of such occurrences has been continually pursued. Once a favorable site is detected, effort should be spent to get as much information as possible aimed at a precise assessment of the genesis and evolution of the areas showing the selected markers. In this work, we discuss the recent finding of possible deposits pointing to the past existence of liquid water in Tikhonravov crater located in Arabia Terra. Comparison of CRISM spectra and those of laboratory minerals formed by aqueous alteration has led us to the conclusion that the studied areas within the impact crater host phyllosilicates deposits. In addition, analysis of the CRISM spectra has resulted in the tentative identification of carbonates mixed with phyllosilicates.

The Swiss-Army-Knife Approach to the Nearly Automatic Analysis for Microearthquake Sequences.

NASA Astrophysics Data System (ADS)

Kraft, T.; Simon, V.; Tormann, T.; Diehl, T.; Herrmann, M.

2017-12-01

Many Swiss earthquake sequence have been studied using relative location techniques, which often allowed to constrain the active fault planes and shed light on the tectonic processes that drove the seismicity. Yet, in the majority of cases the number of located earthquakes was too small to infer the details of the space-time evolution of the sequences, or their statistical properties. Therefore, it has mostly been impossible to resolve clear patterns in the seismicity of individual sequences, which are needed to improve our understanding of the mechanisms behind them. Here we present a nearly automatic workflow that combines well-established seismological analysis techniques and allows to significantly improve the completeness of detected and located earthquakes of a sequence. We start from the manually timed routine catalog of the Swiss Seismological Service (SED), which contains the larger events of a sequence. From these well-analyzed earthquakes we dynamically assemble a template set and perform a matched filter analysis on the station with: the best SNR for the sequence; and a recording history of at least 10-15 years, our typical analysis period. This usually allows us to detect events several orders of magnitude below the SED catalog detection threshold. The waveform similarity of the events is then further exploited to derive accurate and consistent magnitudes. The enhanced catalog is then analyzed statistically to derive high-resolution time-lines of the a- and b-value and consequently the occurrence probability of larger events. Many of the detected events are strong enough to be located using double-differences. No further manual interaction is needed; we simply time-shift the arrival-time pattern of the detecting template to the associated detection. Waveform similarity assures a good approximation of the expected arrival-times, which we use to calculate event-pair arrival-time differences by cross correlation. After a SNR and cycle-skipping quality check these are directly fed into hypoDD. Using this procedure we usually improve the number of well-relocated events by a factor 2-5. We demonstrate the successful application of the workflow at the example of natural sequences in Switzerland and present first results of the advanced analysis the was possible with the enhanced catalogs.

Landscape characteristics influence pond occupancy by frogs after accounting for detectability

USGS Publications Warehouse

Mazerolle, M.J.; Desrochers, A.; Rochefort, L.

2005-01-01

Many investigators have hypothesized that landscape attributes such as the amount and proximity of habitat are important for amphibian spatial patterns. This has produced a number of studies focusing on the effects of landscape characteristics on amphibian patterns of occurrence in patches or ponds, most of which conclude that the landscape is important. We identified two concerns associated with these studies: one deals with their applicability to other landscape types, as most have been conducted in agricultural landscapes; the other highlights the need to account for the probability of detection. We tested the hypothesis that landscape characteristics influence spatial patterns of amphibian occurrence at ponds after accounting for the probability of detection in little-studied peatland landscapes undergoing peat mining. We also illustrated the costs of not accounting for the probability of detection by comparing our results to conventional logistic regression analyses. Results indicate that frog occurrence increased with the percent cover of ponds within 100, 250, and 1000 m, as well as the amount of forest cover within 1000 m. However, forest cover at 250 m had a negative influence on frog presence at ponds. Not accounting for the probability of detection resulted in underestimating the influence of most variables on frog occurrence, whereas a few were overestimated. Regardless, we show that conventional logistic regression can lead to different conclusions than analyses accounting for detectability. Our study is consistent with the hypothesis that landscape characteristics are important in determining the spatial patterns of frog occurrence at ponds. We strongly recommend estimating the probability of detection in field surveys, as this will increase the quality and conservation potential of models derived from such data. ?? 2005 by the Ecological Society of America.

Species traits and catchment-scale habitat factors influence the occurrence of freshwater mussel populations and assemblages

USGS Publications Warehouse

Pandolfo, Tamara J.; Kwak, Thomas J.; Cope, W. Gregory; Heise, Ryan J.; Nichols, Robert B.; Pacifici, Krishna

2016-01-01

Conservation of freshwater unionid mussels presents unique challenges due to their distinctive life cycle, cryptic occurrence and imperilled status. Relevant ecological information is urgently needed to guide their management and conservation.We adopted a modelling approach, which is a novel application to freshwater mussels to enhance inference on rare species, by borrowing data among species in a hierarchical framework to conduct the most comprehensive occurrence analysis for freshwater mussels to date. We incorporated imperfect detection to more accurately examine effects of biotic and abiotic factors at multiple scales on the occurrence of 14 mussel species and the entire assemblage of the Tar River Basin of North Carolina, U.S.A.The single assemblage estimate of detection probability for all species was 0.42 (95% CI, 0.36–0.47) with no species- or site-specific detection effects identified. We empirically observed 15 mussel species in the basin but estimated total species richness at 21 (95% CI, 16–24) when accounting for imperfect detection.Mean occurrence probability among species ranged from 0.04 (95% CI, 0.01–0.16) for Alasmidonta undulata, an undescribed Lampsilis sp., and Strophitus undulatus to 0.67 (95% CI, 0.42–0.86) for Elliptio icterina. Median occurrence probability among sites was <0.30 for all species with the exception of E. icterina. Site occurrence probability generally related to mussel conservation status, with reduced occurrence for endangered and threatened species.Catchment-scale abiotic variables (stream power, agricultural land use) and species traits (brood time, host specificity, tribe) influenced the occurrence of mussel assemblages more than reach- or microhabitat-scale features.Our findings reflect the complexity of mussel ecology and indicate that habitat restoration alone may not be adequate for mussel conservation. Catchment-scale management can benefit an entire assemblage, but species-specific strategies may be necessary for successful conservation. The hierarchical multispecies modelling approach revealed findings that could not be elucidated by other means, and the approach may be applied more broadly to other river basins and regions. Accurate measures of assemblage dynamics, such as occurrence and species richness, are required to create management plans for effective conservation.

Integrating occurrence and detectability patterns based on interview data: a case study for threatened mammals in Equatorial Guinea

USGS Publications Warehouse

Martínez-Martí, Chele; Jiménez-Franco, María V.; Royle, J. Andrew; Palazón, José A.; Calvo, José F.

2016-01-01

Occurrence models that account for imperfect detection of species are increasingly used for estimating geographical range, for determining species-landscape relations and to prioritize conservation actions worldwide. In 2010, we conducted a large-scale survey in Río Muni, the mainland territory of Equatorial Guinea, which aimed to estimate the probabilities of occurrence and detection of threatened mammals based on environmental covariates, and to identify priority areas for conservation. Interviews with hunters were designed to record presence/absence data of seven species (golden cat, leopard, forest elephant, forest buffalo, western gorilla, chimpanzee and mandrill) in 225 sites throughout the region. We fitted single season occupancy models and recently developed models which also include false positive errors (i.e. species detected in places where it actually does not occur), which should provide more accurate estimates for most species, which are susceptible to mis-identification. Golden cat and leopard had the lowest occurrence rates in the region, whereas primates had the highest rates. All species, except gorilla, were affected negatively by human settlements. The southern half of Río Muni showed the highest occurrence of the species studied, and conservation strategies for ensuring the persistence of threatened mammals should be focused on this area.

Integrating occurrence and detectability patterns based on interview data: a case study for threatened mammals in Equatorial Guinea.

PubMed

Martínez-Martí, Chele; Jiménez-Franco, María V; Royle, J Andrew; Palazón, José A; Calvo, José F

2016-09-26

Occurrence models that account for imperfect detection of species are increasingly used for estimating geographical range, for determining species-landscape relations and to prioritize conservation actions worldwide. In 2010, we conducted a large-scale survey in Río Muni, the mainland territory of Equatorial Guinea, which aimed to estimate the probabilities of occurrence and detection of threatened mammals based on environmental covariates, and to identify priority areas for conservation. Interviews with hunters were designed to record presence/absence data of seven species (golden cat, leopard, forest elephant, forest buffalo, western gorilla, chimpanzee and mandrill) in 225 sites throughout the region. We fitted single season occupancy models and recently developed models which also include false positive errors (i.e. species detected in places where it actually does not occur), which should provide more accurate estimates for most species, which are susceptible to mis-identification. Golden cat and leopard had the lowest occurrence rates in the region, whereas primates had the highest rates. All species, except gorilla, were affected negatively by human settlements. The southern half of Río Muni showed the highest occurrence of the species studied, and conservation strategies for ensuring the persistence of threatened mammals should be focused on this area.

Integrating occurrence and detectability patterns based on interview data: a case study for threatened mammals in Equatorial Guinea

PubMed Central

Martínez-Martí, Chele; Jiménez-Franco, María V.; Royle, J. Andrew; Palazón, José A.; Calvo, José F.

2016-01-01

Occurrence models that account for imperfect detection of species are increasingly used for estimating geographical range, for determining species-landscape relations and to prioritize conservation actions worldwide. In 2010, we conducted a large-scale survey in Río Muni, the mainland territory of Equatorial Guinea, which aimed to estimate the probabilities of occurrence and detection of threatened mammals based on environmental covariates, and to identify priority areas for conservation. Interviews with hunters were designed to record presence/absence data of seven species (golden cat, leopard, forest elephant, forest buffalo, western gorilla, chimpanzee and mandrill) in 225 sites throughout the region. We fitted single season occupancy models and recently developed models which also include false positive errors (i.e. species detected in places where it actually does not occur), which should provide more accurate estimates for most species, which are susceptible to mis-identification. Golden cat and leopard had the lowest occurrence rates in the region, whereas primates had the highest rates. All species, except gorilla, were affected negatively by human settlements. The southern half of Río Muni showed the highest occurrence of the species studied, and conservation strategies for ensuring the persistence of threatened mammals should be focused on this area. PMID:27666671

Temporal Variation of Tectonic Tremor Activity Associated with Nearby Earthquakes

NASA Astrophysics Data System (ADS)

Chao, K.; Van der Lee, S.; Hsu, Y. J.; Pu, H. C.

2017-12-01

Tectonic tremor and slow slip events, located downdip from the seismogenic zone, hold the key to recurring patterns of typical earthquakes. Several findings of slow aseismic slip during the prenucletion processes of nearby earthquakes have provided new insight into the study of stress transform of slow earthquakes in fault zones prior to megathrust earthquakes. However, how tectonic tremor is associated with the occurrence of nearby earthquakes remains unclear. To enhance our understanding of the stress interaction between tremor and earthquakes, we developed an algorithm for the automatic detection and location of tectonic tremor in the collisional tectonic environment in Taiwan. Our analysis of a three-year data set indicates a short-term increase in the tremor rate starting at 19 days before the 2010 ML6.4 Jiashian main shock (Chao et al., JGR, 2017). Around the time when the tremor rate began to rise, one GPS station recorded a flip in its direction of motion. We hypothesize that tremor is driven by a slow-slip event that preceded the occurrence of the shallower nearby main shock, even though the inferred slip is too small to be observed by all GPS stations. To better quantify what the necessary condition for tremor to response to nearby earthquakes is, we obtained a 13-year ambient tremor catalog from 2004 to 2016 in the same region. We examine the spatiotemporal relationship between tremor and 37 ML>=5.0 (seven events with ML>=6.0) nearby earthquakes located within 0.5 degrees to the active tremor sources. The findings from this study can enhance our understanding of the interaction among tremor, slow slip, and nearby earthquakes in the high seismic hazard regions.

Beyond habitat structure: Landscape heterogeneity explains the monito del monte (Dromiciops gliroides) occurrence and behavior at habitats dominated by exotic trees.

PubMed

Salazar, Daniela A; Fontúrbel, Francisco E

2016-09-01

Habitat structure determines species occurrence and behavior. However, human activities are altering natural habitat structure, potentially hampering native species due to the loss of nesting cavities, shelter or movement pathways. The South American temperate rainforest is experiencing an accelerated loss and degradation, compromising the persistence of many native species, and particularly of the monito del monte (Dromiciops gliroides Thomas, 1894), an arboreal marsupial that plays a key role as seed disperser. Aiming to compare 2 contrasting habitats (a native forest and a transformed habitat composed of abandoned Eucalyptus plantations and native understory vegetation), we assessed D. gliroides' occurrence using camera traps and measured several structural features (e.g. shrub and bamboo cover, deadwood presence, moss abundance) at 100 camera locations. Complementarily, we used radio telemetry to assess its spatial ecology, aiming to depict a more complete scenario. Moss abundance was the only significant variable explaining D. gliroides occurrence between habitats, and no structural variable explained its occurrence at the transformed habitat. There were no differences in home range, core area or inter-individual overlapping. In the transformed habitats, tracked individuals used native and Eucalyptus-associated vegetation types according to their abundance. Diurnal locations (and, hence, nesting sites) were located exclusively in native vegetation. The landscape heterogeneity resulting from the vicinity of native and Eucalyptus-associated vegetation likely explains D. gliroides occurrence better than the habitat structure itself, as it may be use Eucalyptus-associated vegetation for feeding purposes but depend on native vegetation for nesting. © 2016 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and John Wiley & Sons Australia, Ltd.

Addressing multi-label imbalance problem of surgical tool detection using CNN.

PubMed

Sahu, Manish; Mukhopadhyay, Anirban; Szengel, Angelika; Zachow, Stefan

2017-06-01

A fully automated surgical tool detection framework is proposed for endoscopic video streams. State-of-the-art surgical tool detection methods rely on supervised one-vs-all or multi-class classification techniques, completely ignoring the co-occurrence relationship of the tools and the associated class imbalance. In this paper, we formulate tool detection as a multi-label classification task where tool co-occurrences are treated as separate classes. In addition, imbalance on tool co-occurrences is analyzed and stratification techniques are employed to address the imbalance during convolutional neural network (CNN) training. Moreover, temporal smoothing is introduced as an online post-processing step to enhance runtime prediction. Quantitative analysis is performed on the M2CAI16 tool detection dataset to highlight the importance of stratification, temporal smoothing and the overall framework for tool detection. The analysis on tool imbalance, backed by the empirical results, indicates the need and superiority of the proposed framework over state-of-the-art techniques.

Smart-aggregate-based damage detection of fiber-reinforced-polymer-strengthened columns under reversed cyclic loading

NASA Astrophysics Data System (ADS)

Howser, Rachel; Moslehy, Yashar; Gu, Haichang; Dhonde, Hemant; Mo, Y. L.; Ayoub, Ashraf; Song, Gangbing

2011-07-01

Structural health monitoring is an important aspect of the maintenance of large civil infrastructures, especially for bridge columns in areas of high seismic activity. In this project, recently developed innovative piezoceramic-based sensors were utilized to perform the health monitoring of a shear-critical reinforced concrete (RC) bridge column subjected to reversed cyclic loading. After the column failed, it was wrapped with fiber reinforced polymer (FRP) sheets, commonly used to retrofit seismically damaged structures. The FRP-strengthened column was retested under the same reversed cyclic loading pattern. Innovative piezoceramic-based sensors, called 'smart aggregates', were utilized as transducers for health monitoring purposes. On the basis of the smart aggregates developed, an active-sensing approach and an impact-hammer-based approach were used to evaluate the health status of the RC column during the loading procedure. Wave transmission energy is attenuated by the existence of cracks during the loading procedure, and this attenuation phenomenon alters the curve of the transfer function between the actuator and sensor. To detect the damage occurrence and evaluate the damage severity, transfer function curves were compared with those obtained during the period of healthy status. A transfer-function-based damage index matrix was developed to demonstrate the damage severity at different locations. Experimental results verified the effectiveness of the smart aggregates in health monitoring of the FRP-strengthened column as well as the unstrengthened column. The experimental results show that the proposed smart-aggregate-based approach can successfully detect damage occurrence and evaluate its severity.

Suitability of pharmaceuticals and personal care products (PPCPs) and artificial sweeteners (ASs) as wastewater indicators in the Pearl River Delta, South China.

PubMed

Yang, Yuan-Yuan; Liu, Wang-Rong; Liu, You-Sheng; Zhao, Jian-Liang; Zhang, Qian-Qian; Zhang, Min; Zhang, Jin-Na; Jiang, Yu-Xia; Zhang, Li-Juan; Ying, Guang-Guo

2017-07-15

Wastewater indicator is a useful tool for evaluating the wastewater impact on natural water, but there is little information about the suitability of wastewater indicators for different regions. This study aimed to select suitable wastewater indicators in the Pearl River Delta region, south China by screening a range of wastewater related organic compounds. The screening campaign was carried out by investigating the occurrence and removal efficiencies of 93 pharmaceuticals and personal care products (PPCPs) and 5 artificial sweeteners (ASs) in nine wastewater treatment plants (WWTPs) located in the region, and the occurrence of these target compounds in the contaminated and clean surface water of the Pearl River. An ideal wastewater indicator should be hydrophilic, source-specific for domestic wastewater, ubiquitous in contaminated surface water with detection frequency (DF) >80% and absent in background water samples. For liable indicators, high removal rates (>90%) should be observed in WWTPs and they should be detected in all the influent samples at concentrations fifty times higher than their limits of quantification. For conservative indicators, low removal rates (<50%) should be observed in WWTPs and they should be detected in all the effluent samples at concentrations fifty times higher than their limits of quantification. Based on the above criteria, sucralose and fluconazole were selected as conservative indicators in the region, while cyclamate, saccharin, methyl paraben, ethyl paraben, propyl paraben, paracetamol, salicylic acid and caffeine were selected as liable indicators. Copyright © 2017 Elsevier B.V. All rights reserved.

Incidence of Enteric Viruses in Groundwater from Household Wells in Wisconsin

PubMed Central

Borchardt, Mark A.; Bertz, Phil D.; Spencer, Susan K.; Battigelli, David A.

2003-01-01

Recent studies on the contamination of groundwater with human enteric viruses have focused on public water systems, whereas little is known about the occurrence of viruses in private household wells. The objective of the present study was to estimate the incidence of viruses in Wisconsin household wells located near septage land application sites or in rural subdivisions served by septic systems. Fifty wells in seven hydrogeologic districts were sampled four times over a year, once each season. Reverse transcriptase PCR (RT-PCR), followed by Southern hybridization, was used to detect enteroviruses, rotavirus, hepatitis A virus (HAV), and Norwalk-like viruses (NLVs). In addition, cell culture was used to detect culturable enteroviruses. Companion water samples were collected for total coliforms, Escherichia coli, fecal enterococci, F-specific RNA coliphages, nitrate, and chloride analyses. Among the 50 wells, four (8%) were positive for viruses by RT-PCR. Three wells were positive for HAV, and the fourth well was positive for both rotavirus and NLV in one sample and an enterovirus in another sample. Contamination was transient, since none of the wells was virus positive for two sequential samples. Culturable enteroviruses were not detected in any of the wells. Water quality indicators were not statistically associated with virus occurrence, although some concordance was noted for chloride. The present study is the first in the United States to systematically monitor private household wells for virus contamination and, combined with data for public wells, provides further insight on the extent of groundwater contamination with human enteric viruses. PMID:12571044

Stormtime substorm onsets: occurrence and flow channel triggering

NASA Astrophysics Data System (ADS)

Lyons, Larry R.; Zou, Ying; Nishimura, Yukitoshi; Gallardo-Lacourt, Bea; Angelopulos, Vassilis; Donovan, Eric F.

2018-05-01

Bright auroral emissions during geomagnetic storms provide a good opportunity for testing the proposal that substorm onset is frequently triggered by plasma sheet flow bursts that are manifested in the ionosphere as auroral streamers. We have used the broad coverage of the ionospheric mapping of the plasma sheet offered by the high-resolution THEMIS all-sky-imagers (ASIs) and chose the main phases of 9 coronal mass ejection (CME) related and 9 high-speed stream (HSS)-related geomagnetic storms, and identified substorm auroral onsets defined as brightening followed by poleward expansion. We found a detectable streamer heading to near the substorm onset location for all 60 onsets that we identified and were observed well by the ASIs. This indicates that substorm onsets are very often triggered by the intrusion of plasma with lower entropy than the surrounding plasma to the onset region, with the caveat that the ASIs do not give a direct measure of the intruding plasma. The majority of the triggering streamers are "tilted streamers," which extend eastward as their eastern tip tilts equatorward to near the substorm onset location. Fourteen of the 60 cases were identified as "Harang streamers," where the streamer discernibly turns toward the west poleward of reaching to near the onset latitude, indicating flow around the Harang reversal. Using the ASI observations, we observed substantially less substorm onsets for CME storms than for HSS storms, a result in disagreement with a recent finding of approximately equal substorm occurrences. We suggest that this difference is a result of strong non-substorm streamers that give substorm-like signatures in ground magnetic field observations but are not substorms based on their auroral signature. Our results from CME storms with steady, strong southward IMF are not consistent with the 2-4 h repetition of substorms that has been suggested for moderate to strong southward IMF conditions. Instead, our results indicate substantially lower substorm occurrence during such steady driving conditions. Our results also show the much more frequent occurrence of substorms during HSS period, which is likely due to the highly fluctuating IMF. [Figure not available: see fulltext.

Feldspathic Rocks and Associated Mineral Phases on Mars: Evidence for Metamorphism?

NASA Astrophysics Data System (ADS)

Sessa, A. M.; Wray, J. J.

2017-12-01

It is widely accepted that the great majority of Martian crust is basaltic, suggesting that magmatic differentiation was not a key contributor to its production. However, remote sensing studies employing thermal emission imaging instruments aboard Mars Global Surveyor and Mars Odyssey, and recent in situ analyses performed by ChemCam onboard Curiosity, have indicated the presence of more silicic, feldspar-rich rocks with minimal mafics. Using the Compact Reconnaissance Imaging Spectrometer for Mars (CRISM), conceivably similar feldspathic rocks have been reported in other locations across the surface, which include: small outcrops located in the lower stratigraphic section of eastern Vallis Marineris; light-toned, polygonally fractured outcrops exposed within flat-floored craters; as well as other erosional or structural exposures (e.g., buttes, massifs, and crater rims). These previously observed occurrences can be classified as either 1) relatively unaltered rock spectrally dominated by feldspar or 2) an altered material in which CRISM detects feldspar in addition to Al, Fe, Mg-phyllosilicates and/or zeolites. Here we report on feldspathic outcrops that differ in their geologic setting from the previously identified occurrences in that they are associated with complex craters. These outcrops are accompanied by mineral phases that are relatively rare on Mars (i.e., analcime and other zeolites, chlorite, prehnite, mica, and carbonate) and may be indicative of hydrothermal or metamorphic processes. In these craters, feldspathic rocks can be found in and around the central uplift, in crater floor deposits, and in the ejecta, with tentative trends in associated mineralogy. These spatial, and mineralogical, relationships will be illustrated by CRISM RGB composite maps overlain on Context Camera imagery for select scenes. We also report new occurrences like those identified by Carter and Poulet (2013), where feldspar and Al-phyllosilicates are the most spectrally dominant phases in isolated ancient crust exposures. The common co-occurrence of these phases, in the absence of any clear indicators of acidic leaching (e.g., alunite or jarosite), is significant because it is consistent with a protolith, prior to alteration, that was devoid of mafic minerals and composed primarily of aluminum silicates.

Occurrence and distribution of conventional and new classes of per- and polyfluoroalkyl substances (PFASs) in the South China Sea.

PubMed

Kwok, Karen Y; Wang, Xin-Hong; Ya, Miaolei; Li, Yongyu; Zhang, Xiao-Hua; Yamashita, Nobuyoshi; Lam, James C W; Lam, Paul K S

2015-03-21

Concentrations of 23 per- and polyfluoroalkyl substances (PFASs), including new classes of PFASs, in seawater samples were investigated for their occurrence and the interaction of the ocean currents with the distribution of PFASs in the South China Sea. This study revealed that socio-economic development was associated with the PFAS contamination in coastal regions of South China. Significant correlations between concentration of total PFASs with gross domestic product (GDP) per capita and population density were found in the areas, suggesting that the influence of intense human activities in these areas may have resulted in higher PFAS contamination to the adjacent environment. Di-substituted polyfluoroalkyl phosphate (diPAP), one of the potential replacements for PFASs, was only detected in the heavily developed region, namely Pearl River Delta (PRD). Total PFAS concentrations, ranging from 195 to 4925 pg/L, were detected at 51 sampling stations of the South China Sea. The results also confirmed that PFAS contamination in the South China Sea is strongly affected by the ocean currents. In comparison to perfluoroactane sulfonate (PFOS) concentrations measured nine years ago at the same locations, the concentrations in this study were found to be two times higher. This indicated that the use and production of perfluoroalkyl sulfonates (PFSAs) has been continuing in the region. Copyright © 2014 Elsevier B.V. All rights reserved.

Mono-, di- and trimethylated homologues of isoprenoid tetraether lipid cores in archaea and environmental samples: mass spectrometric identification and significance.

PubMed

Knappy, Chris; Barillà, Daniela; Chong, James; Hodgson, Dominic; Morgan, Hugh; Suleman, Muhammad; Tan, Christine; Yao, Peng; Keely, Brendan

2015-12-01

Higher homologues of widely reported C(86) isoprenoid diglycerol tetraether lipid cores, containing 0-6 cyclopentyl rings, have been identified in (hyper)thermophilic archaea, representing up to 21% of total tetraether lipids in the cells. Liquid chromatography-tandem mass spectrometry confirms that the additional carbon atoms in the C(87-88) homologues are located in the etherified chains. Structures identified include dialkyl and monoalkyl ('H-shaped') tetraethers containing C(40-42) or C(81-82) hydrocarbons, respectively, many representing novel compounds. Gas chromatography-mass spectrometric analysis of hydrocarbons released from the lipid cores by ether cleavage suggests that the C(40) chains are biphytanes and the C(41) chains 13-methylbiphytanes. Multiple isomers, having different chain combinations, were recognised among the dialkyl lipids. Methylated tetraethers are produced by Methanothermobacter thermautotrophicus in varying proportions depending on growth conditions, suggesting that methylation may be an adaptive mechanism to regulate cellular function. The detection of methylated lipids in Pyrobaculum sp. AQ1.S2 and Sulfolobus acidocaldarius represents the first reported occurrences in Crenarchaeota. Soils and aquatic sediments from geographically distinct mesotemperate environments that were screened for homologues contained monomethylated tetraethers, with di- and trimethylated structures being detected occasionally. The structural diversity and range of occurrences of the C(87-89) tetraethers highlight their potential as complementary biomarkers for archaea in natural environments. Copyright © 2015 John Wiley & Sons, Ltd.

Occurrence of tetracycline-resistant fecal coliforms and their resistance genes in an urban river impacted by municipal wastewater treatment plant discharges.

PubMed

Zhang, Chong-Miao; Du, Cong; Xu, Huan; Miao, Yan-Hui; Cheng, Yan-Yan; Tang, Hao; Zhou, Jin-Hong; Wang, Xiao-Chang

2015-01-01

Antibiotic resistance of fecal coliforms in an urban river poses great threats to both human health and the environment. To investigate the occurrence and distribution of antibiotic resistant bacteria in an urban river, water samples were collected from the Chanhe River in Xi'an, China. After membrane filtration of water samples, the tetracycline resistance rate of fecal coliforms and their resistance genes were detected by plating and polymerase chain reaction (PCR), respectively. We found that fecal coliforms were generally resistant to tetracycline and saw average resistance rates of 44.7%. The genes tetA and tetB were widely detected, and their positive rate was 60%-100% and 40%-90%, respectively. We found few strains containing tetC, tetK, tetQ and tetX, and we did not identify any strains containing tetG, tetM or tetO. The prevalence of tetA and tetB over other genes indicated that the main mechanism for resistance to tetracycline is by changes to the efflux pump. Our analysis of the types and proportion of tetracycline resistance genes in the Chanhe River at locations upstream and downstream of the urban center suggests that the increased number of tetracycline-resistant fecal coliforms and spatial variation of tetracycline resistance genes diversity were related to municipal wastewater treatment plant discharge.

Observation of Long Ionospheric Recoveries from Lightning-induced Electron Precipitation Events

NASA Astrophysics Data System (ADS)

Mohammadpour Salut, M.; Cohen, M.

2015-12-01

Lightning strokes induces lower ionospheric nighttime disturbances which can be detected through Very Low Frequency (VLF) remote sensing via at least two means: (1) direct heating and ionization, known as an Early event, and (2) triggered precipitation of energetic electrons from the radiation belts, known as Lightning-induced Electron Precipitation (LEP). For each, the ionospheric recover time is typically a few minutes or less. A small class of Early events have been identified as having unusually long ionospheric recoveries (10s of minutes), with the underlying mechanism still in question. Our study shows for the first time that some LEP events also demonstrate unusually long recovery. The VLF events were detected by visual inspection of the recorded data in both the North-South and East-West magnetic fields. Data from the National Lightning Detection Network (NLDN) are used to determine the location and peak current of the lightning responsible for each lightning-associated VLF perturbation. LEP or Early VLF events are determined by measuring the time delay between the causative lightning discharges and the onset of all lightning-associated perturbations. LEP events typically possess an onset delay greater than ~ 200 msec following the causative lightning discharges, while the onset of Early VLF events is time-aligned (<20 msec) with the lightning return stroke. Nonducted LEP events are distinguished from ducted events based on the location of the causative lightning relative to the precipitation region. From 15 March to 20 April and 15 October to 15 November 2011, a total of 385 LEP events observed at Indiana, Montana, Colorado and Oklahoma VLF sites, on the NAA, NLK and NML transmitter signals. 46 of these events exhibited a long recovery. It has been found that the occurrence rate of ducted long recovery LEP events is higher than nonducted. Of the 46 long recovery LEP events, 33 events were induced by ducted whistlers, and 13 events were associated with nonducted obliquely propagating whistler waves. The occurrence of high peak current lightning strokes is a prerequisite for long recovery LEP events.

Global cloud top height retrieval using SCIAMACHY limb spectra: model studies and first results

NASA Astrophysics Data System (ADS)

Eichmann, Kai-Uwe; Lelli, Luca; von Savigny, Christian; Sembhi, Harjinder; Burrows, John P.

2016-03-01

Cloud top heights (CTHs) are retrieved for the period 1 January 2003 to 7 April 2012 using height-resolved limb spectra measured with the SCanning Imaging Absorption SpectroMeter for Atmospheric CHartographY (SCIAMACHY) on board ENVISAT (ENVIronmental SATellite). In this study, we present the retrieval code SCODA (SCIAMACHY cloud detection algorithm) based on a colour index method and test the accuracy of the retrieved CTHs in comparison to other methods. Sensitivity studies using the radiative transfer model SCIATRAN show that the method is capable of detecting cloud tops down to about 5 km and very thin cirrus clouds up to the tropopause. Volcanic particles can be detected that occasionally reach the lower stratosphere. Upper tropospheric ice clouds are observable for a nadir cloud optical thickness (COT) ≥ 0.01, which is in the subvisual range. This detection sensitivity decreases towards the lowermost troposphere. The COT detection limit for a water cloud top height of 5 km is roughly 0.1. This value is much lower than thresholds reported for passive cloud detection methods in nadir-viewing direction. Low clouds at 2 to 3 km can only be retrieved under very clean atmospheric conditions, as light scattering of aerosol particles interferes with the cloud particle scattering. We compare co-located SCIAMACHY limb and nadir cloud parameters that are retrieved with the Semi-Analytical CloUd Retrieval Algorithm (SACURA). Only opaque clouds (τN,c > 5) are detected with the nadir passive retrieval technique in the UV-visible and infrared wavelength ranges. Thus, due to the frequent occurrence of thin clouds and subvisual cirrus clouds in the tropics, larger CTH deviations are detected between both viewing geometries. Zonal mean CTH differences can be as high as 4 km in the tropics. The agreement in global cloud fields is sufficiently good. However, the land-sea contrast, as seen in nadir cloud occurrence frequency distributions, is not observed in limb geometry. Co-located cloud top height measurements of the limb-viewing Michelson Interferometer for Passive Atmospheric Sounding (MIPAS) on ENVISAT are compared for the period from January 2008 to March 2012. The global CTH agreement of about 1 km is observed, which is smaller than the vertical field of view of both instruments. Lower stratospheric aerosols from volcanic eruptions occasionally interfere with the cloud retrieval and inhibit the detection of tropospheric clouds. The aerosol impact on cloud retrievals was studied for the volcanoes Kasatochi (August 2008), Sarychev Peak (June 2009), and Nabro (June 2011). Long-lasting aerosol scattering is detected after these events in the Northern Hemisphere for heights above 12.5 km in tropical and polar latitudes. Aerosol top heights up to about 22 km are found in 2009 and the enhanced lower stratospheric aerosol layer persisted for about 7 months. In August 2009 about 82 % of the lower stratosphere between 30 and 70° N was filled with scattering particles and nearly 50 % in October 2008.

Shallow moonquakes - How they compare with earthquakes

NASA Technical Reports Server (NTRS)

Nakamura, Y.

1980-01-01

Of three types of moonquakes strong enough to be detectable at large distances - deep moonquakes, meteoroid impacts and shallow moonquakes - only shallow moonquakes are similar in nature to earthquakes. A comparison of various characteristics of moonquakes with those of earthquakes indeed shows a remarkable similarity between shallow moonquakes and intraplate earthquakes: (1) their occurrences are not controlled by tides; (2) they appear to occur in locations where there is evidence of structural weaknesses; (3) the relative abundances of small and large quakes (b-values) are similar, suggesting similar mechanisms; and (4) even the levels of activity may be close. The shallow moonquakes may be quite comparable in nature to intraplate earthquakes, and they may be of similar origin.

System and method for bidirectional flow and controlling fluid flow in a conduit

DOEpatents

Ortiz, M.G.

1999-03-23

A system for measuring bidirectional flow, including backflow, of fluid in a conduit is disclosed. The system utilizes a structural mechanism to create a pressure differential in the conduit. Pressure sensors are positioned upstream from the mechanism, at the mechanism, and downstream from the mechanism. Data from the pressure sensors are transmitted to a microprocessor or computer, and pressure differential detected between the pressure sensors is then used to calculate the backflow. Control signals may then be generated by the microprocessor or computer to shut off valves located in the conduit, upon the occurrence of backflow, or to control flow, total material dispersed, etc. in the conduit. 3 figs.

Moonquakes and lunar tectonism results from the Apollo passive seismic experiment.

NASA Technical Reports Server (NTRS)

Latham, G.; Ewing, M.; Dorman, J.; Lammlein, D.; Press, F.; Toksoz, N.; Sutton, G.; Duennebier, F.; Nakamura, Y.

1972-01-01

The natural seismicity of the moon appears to be very low relative to that of the earth. However, moonquakes do occur. They are detected by the stations of the Apollo seismic network at an average rate of 1800/yr at Station 14 and at lower rates at Stations 12 and 15. All of the moonquakes are small, and in the few cases for which the foci have been located, they occur at great depth (about 800 km). The frequency of occurrence of moonquakes is strongly correlated with lunar tides. The dynamic processes that generate quakes are clearly much less vigorous within the moon than they are within the earth.

Hierarchical models of animal abundance and occurrence

USGS Publications Warehouse

Royle, J. Andrew; Dorazio, R.M.

2006-01-01

Much of animal ecology is devoted to studies of abundance and occurrence of species, based on surveys of spatially referenced sample units. These surveys frequently yield sparse counts that are contaminated by imperfect detection, making direct inference about abundance or occurrence based on observational data infeasible. This article describes a flexible hierarchical modeling framework for estimation and inference about animal abundance and occurrence from survey data that are subject to imperfect detection. Within this framework, we specify models of abundance and detectability of animals at the level of the local populations defined by the sample units. Information at the level of the local population is aggregated by specifying models that describe variation in abundance and detection among sites. We describe likelihood-based and Bayesian methods for estimation and inference under the resulting hierarchical model. We provide two examples of the application of hierarchical models to animal survey data, the first based on removal counts of stream fish and the second based on avian quadrat counts. For both examples, we provide a Bayesian analysis of the models using the software WinBUGS.

Characterization of bacterial coliform occurrences in different zones of a drinking water distribution system.

PubMed

Blanch, A R; Galofré, B; Lucena, F; Terradillos, A; Vilanova, X; Ribas, F

2007-03-01

To compare the bacterial coliforms detected from occurrences in three zones of a water distribution system supplied by two separate water sources. Conventional and standardized protocols for identifying enterobacterial populations were applied. Additional tests to confirm isolates were included. Analyses of diversity and population similarity were performed using the Phene Plate System, a miniaturized biochemical phenotyping method. Isolates were identified by the API 20E system in tandem with biochemical phenotyping. A total of 16 576 samples were taken from the water distribution system, with 1416 isolates analysed. A low number of coliform occurrences were observed (2%). Escherichia coli was not detected in either water origin or in Zone 2 samples; however, in Zones 1 and 3 a low number of cases of E. coli were recorded. The percentages of E. coli depended on the identification criteria. Eight biochemical profiles for coliform populations were defined according to the results of the confirmative tests. There was a high diversity among these populations in the three zones studied, although no significant variations in their composition (associated with occurrences in the different zones) were observed. Klebsiella oxytoca was the most commonly detected species irrespective of zone, although seven other enterobacterial genera were also found. Analysis of the enzymatic activity of beta-glucuronidase or application of the criteria established in the norm ISO 9308-1, in tandem with thermotolerance was needed to evaluate the occurrence of E. coli in the distribution systems. Detected occurrences of bacterial coliforms could be associated with re-growth patterns for specific sampling points in the distribution system. Seasonal differences, independent of the studied zones, were observed. Biochemical phenotyping of bacterial coliforms was shown to be a useful method on the characterization of occurrences in water distribution systems.

Species occurrence data for the nation

USGS Publications Warehouse

,

2015-09-28

BISON's size is unprecedented, including records for most living species found in the U.S. and encompassing the efforts of more than a million professional and citizen scientists. And the vast majority of BISON's species occurrence records are specific locations, not just county or state records.

Unmodeled observation error induces bias when inferring patterns and dynamics of species occurrence via aural detections

USGS Publications Warehouse

McClintock, Brett T.; Bailey, Larissa L.; Pollock, Kenneth H.; Simons, Theodore R.

2010-01-01

The recent surge in the development and application of species occurrence models has been associated with an acknowledgment among ecologists that species are detected imperfectly due to observation error. Standard models now allow unbiased estimation of occupancy probability when false negative detections occur, but this is conditional on no false positive detections and sufficient incorporation of explanatory variables for the false negative detection process. These assumptions are likely reasonable in many circumstances, but there is mounting evidence that false positive errors and detection probability heterogeneity may be much more prevalent in studies relying on auditory cues for species detection (e.g., songbird or calling amphibian surveys). We used field survey data from a simulated calling anuran system of known occupancy state to investigate the biases induced by these errors in dynamic models of species occurrence. Despite the participation of expert observers in simplified field conditions, both false positive errors and site detection probability heterogeneity were extensive for most species in the survey. We found that even low levels of false positive errors, constituting as little as 1% of all detections, can cause severe overestimation of site occupancy, colonization, and local extinction probabilities. Further, unmodeled detection probability heterogeneity induced substantial underestimation of occupancy and overestimation of colonization and local extinction probabilities. Completely spurious relationships between species occurrence and explanatory variables were also found. Such misleading inferences would likely have deleterious implications for conservation and management programs. We contend that all forms of observation error, including false positive errors and heterogeneous detection probabilities, must be incorporated into the estimation framework to facilitate reliable inferences about occupancy and its associated vital rate parameters.

Occurrence of C. botulinum in healthy cattle and their environment following poultry botulism outbreaks in mixed farms.

PubMed

Souillard, R; Le Maréchal, C; Hollebecque, F; Rouxel, S; Barbé, A; Houard, E; Léon, D; Poëzévara, T; Fach, P; Woudstra, C; Mahé, F; Chemaly, M; Le Bouquin, S

2015-10-22

Ten cattle farms located in an area with a recent history of poultry botulism outbreaks were investigated to evaluate the occurrence of toxigenic C. botulinum in healthy cattle. Environmental samples in the 10 cattle farms and bovine fecal contents in farms with a confirmed environmental contamination were collected. Detection of C. botulinum toxin genes C, D, C/D, D/C and E was performed using real-time PCR. 4.9% (7/143) of the environmental samples collected in the 10 investigated cattle farms were positive for C. botulinum type C/D. Theses samples (boot-swabs in stalls and on pasture and water of a stream) were collected in 3 different farms. One cow dung sample and 3 out of 64 fecal contents samples collected in a single farm were also positive for C. botulinum type C/D. This study demonstrates that cattle are probably indirectly contaminated via poultry botulism in the area and that they can be intermittent carrier of C. botulinum type C/D after poultry botulism outbreaks in mixed farms. Copyright © 2015 Elsevier B.V. All rights reserved.

The occurrence and wave properties of H+-, He+-, and O+-band EMIC waves observed by the Van Allen Probes

NASA Astrophysics Data System (ADS)

Saikin, A. A.; Zhang, J.-C.; Allen, R. C.; Smith, C. W.; Kistler, L. M.; Spence, H. E.; Torbert, R. B.; Kletzing, C. A.; Jordanova, V. K.

2015-09-01

We perform a statistical study of electromagnetic ion cyclotron (EMIC) waves detected by the Van Allen Probes mission to investigate the spatial distribution of their occurrence, wave power, ellipticity, and normal angle. The Van Allen Probes have been used which allow us to explore the inner magnetosphere (1.1 to 5.8 RE). Magnetic field measurements from the Electric and Magnetic Field Instrument Suite and Integrated Science on board the Van Allen Probes are used to identify EMIC wave events for the first 22 months of the mission operation (8 September 2012 to 30 June 2014). EMIC waves are examined in H+, He+, and O+ bands. Over 700 EMIC wave events have been identified over the three different wave bands (265 H+-band events, 438 He+-band events, and 68 O+-band events). EMIC wave events are observed between L = 2-8, with over 140 EMIC wave events observed below L = 4. Results show that H+-band EMIC waves have two peak magnetic local time (MLT) occurrence regions: prenoon (09:00 < MLT ≤ 12:00) and afternoon (15:00 < MLT ≤ 17:00) sectors. He+-band EMIC waves feature an overall stronger dayside occurrence. O+-band EMIC waves have one peak region located in the morning sector at lower L shells (L < 4). He+-band EMIC waves average the highest wave power overall (>0.1 nT2/Hz), especially in the afternoon sector. Ellipticity observations reveal that linearly polarized EMIC waves dominate in lower L shells.

Aquifer sensitivity to pesticide leaching: Testing a soils and hydrogeologic index method

USGS Publications Warehouse

Mehnert, E.; Keefer, D.A.; Dey, W.S.; Wehrmann, H.A.; Wilson, S.D.; Ray, C.

2005-01-01

For years, researchers have sought index and other methods to predict aquifer sensitivity and vulnerability to nonpoint pesticide contamination. In 1995, an index method and map were developed to define aquifer sensitivity to pesticide leaching based on a combination of soil and hydrogeologic factors. The soil factor incorporated three soil properties: hydraulic conductivity, amount of organic matter within individual soil layers, and drainage class. These properties were obtained from a digital soil association map. The hydrogeologic factor was depth to uppermost aquifer material. To test this index method, a shallow ground water monitoring well network was designed, installed, and sampled in Illinois. The monitoring wells had a median depth of 7.6 m and were located adjacent to corn and soybean fields where the only known sources of pesticides were those used in normal agricultural production. From September 1998 through February 2001, 159 monitoring wells were sampled for 14 pesticides but no pesticide metabolites. Samples were collected and analyzed to assess the distribution of pesticide occurrence across three units of aquifer sensitivity. Pesticides were detected in 18% of all samples and nearly uniformly from samples from the three units of aquifer sensitivity. The new index method did not predict pesticide occurrence because occurrence was not dependent on the combined soil and hydrogeologic factors. However, pesticide occurrence was dependent on the tested hydrogeologic factor and was three times higher in areas where the depth to the uppermost aquifer was <6 m than in areas where the depth to the uppermost aquifer was 6 to <15 m. Copyright ?? 2005 National Ground Water Association.

Methods of detecting and counting raptors: A review

USGS Publications Warehouse

Fuller, M.R.; Mosher, J.A.; Ralph, C. John; Scott, J. Michael

1981-01-01

Most raptors are wide-ranging, secretive, and occur at relatively low densities. These factors, in conjunction with the nocturnal activity of owls, cause the counting of raptors by most standard census and survey efforts to be very time consuming and expensive. This paper reviews the most common methods of detecting and counting raptors. It is hoped that it will be of use to the ever-increasing number of biologists, land-use planners, and managers that must determine the occurrence, density, or population dynamics of raptors. Road counts of fixed station or continuous transect design are often used to sample large areas. Detection of spontaneous or elicited vocalizations, especially those of owls, provides a means of detecting and estimating raptor numbers. Searches for nests are accomplished from foot surveys, observations from automobiles and boats, or from aircraft when nest structures are conspicuous (e.g., Osprey). Knowledge of nest habitat, historic records, and inquiries of local residents are useful for locating nests. Often several of these techniques are combined to help find nest sites. Aerial searches have also been used to locate or count large raptors (e.g., eagles), or those that may be conspicuous in open habitats (e.g., tundra). Counts of birds entering or leaving nest colonies or colonial roosts have been attempted on a limited basis. Results from Christmas Bird Counts have provided an index of the abundance of some species. Trapping and banding generally has proven to be an inefficient method of detecting raptors or estimating their populations. Concentrations of migrants at strategically located points around the world afford the best opportunity to count many rap tors in a relatively short period of time, but the influence of many unquantified variables has inhibited extensive interpretation of these counts. Few data exist to demonstrate the effectiveness of these methods. We believe more research on sampling techniques, rather than complete counts or intensive searches, will provide adequate yet affordable estimates of raptor numbers in addition to providing methods for detecting the presence of raptors on areas of interest to researchers and managers.

Parameters of Glucose and Lipid Metabolism Affect the Occurrence of Colorectal Adenomas Detected by Surveillance Colonoscopies

PubMed Central

Kim, Nam Hee; Suh, Jung Yul; Park, Jung Ho; Park, Dong Il; Cho, Yong Kyun; Sohn, Chong Il; Choi, Kyuyong

2017-01-01

Purpose Limited data are available regarding the associations between parameters of glucose and lipid metabolism and the occurrence of metachronous adenomas. We investigated whether these parameters affect the occurrence of adenomas detected on surveillance colonoscopy. Materials and Methods This longitudinal study was performed on 5289 subjects who underwent follow-up colonoscopy between 2012 and 2013 among 62171 asymptomatic subjects who underwent an initial colonoscopy for a health check-up between 2010 and 2011. The risk of adenoma occurrence was assessed using Cox proportional hazards modeling. Results The mean interval between the initial and follow-up colonoscopy was 2.2±0.6 years. The occurrence of adenomas detected by the follow-up colonoscopy increased linearly with the increasing quartiles of fasting glucose, hemoglobin A1c (HbA1c), insulin, homeostasis model assessment of insulin resistance (HOMA-IR), and triglycerides measured at the initial colonoscopy. These associations persisted after adjusting for confounding factors. The adjusted hazard ratios for adenoma occurrence comparing the fourth with the first quartiles of fasting glucose, HbA1c, insulin, HOMA-IR, and triglycerides were 1.50 [95% confidence interval (CI), 1.26–1.77; ptrend<0.001], 1.22 (95% CI, 1.04–1.43; ptrend=0.024), 1.22 (95% CI, 1.02–1.46; ptrend=0.046), 1.36 (95% CI, 1.14–1.63; ptrend=0.004), and 1.19 (95% CI, 0.99–1.42; ptrend=0.041), respectively. In addition, increasing quartiles of low-density lipoprotein-cholesterol and apolipoprotein B were associated with an increasing occurrence of adenomas. Conclusion The levels of parameters of glucose and lipid metabolism were significantly associated with the occurrence of adenomas detected on surveillance colonoscopy. Improving the parameters of glucose and lipid metabolism through lifestyle changes or medications may be helpful in preventing metachronous adenomas. PMID:28120565

Detection of all four dengue serotypes in Aedes aegypti female mosquitoes collected in a rural area in Colombia

PubMed Central

Pérez-Castro, Rosalía; Castellanos, Jaime E; Olano, Víctor A; Matiz, María Inés; Jaramillo, Juan F; Vargas, Sandra L; Sarmiento, Diana M; Stenström, Thor Axel; Overgaard, Hans J

2016-01-01

The Aedes aegypti vector for dengue virus (DENV) has been reported in urban and periurban areas. The information about DENV circulation in mosquitoes in Colombian rural areas is limited, so we aimed to evaluate the presence of DENV in Ae. aegypti females caught in rural locations of two Colombian municipalities, Anapoima and La Mesa. Mosquitoes from 497 rural households in 44 different rural settlements were collected. Pools of about 20 Ae. aegypti females were processed for DENV serotype detection. DENV in mosquitoes was detected in 74% of the analysed settlements with a pool positivity rate of 62%. The estimated individual mosquito infection rate was 4.12% and the minimum infection rate was 33.3/1,000 mosquitoes. All four serotypes were detected; the most frequent being DENV-2 (50%) and DENV-1 (35%). Two-three serotypes were detected simultaneously in separate pools. This is the first report on the co-occurrence of natural DENV infection of mosquitoes in Colombian rural areas. The findings are important for understanding dengue transmission and planning control strategies. A potential latent virus reservoir in rural areas could spill over to urban areas during population movements. Detecting DENV in wild-caught adult mosquitoes should be included in the development of dengue epidemic forecasting models. PMID:27074252

Detection of all four dengue serotypes in Aedes aegypti female mosquitoes collected in a rural area in Colombia.

PubMed

Pérez-Castro, Rosalía; Castellanos, Jaime E; Olano, Víctor A; Matiz, María Inés; Jaramillo, Juan F; Vargas, Sandra L; Sarmiento, Diana M; Stenström, Thor Axel; Overgaard, Hans J

2016-04-01

The Aedes aegypti vector for dengue virus (DENV) has been reported in urban and periurban areas. The information about DENV circulation in mosquitoes in Colombian rural areas is limited, so we aimed to evaluate the presence of DENV in Ae. aegypti females caught in rural locations of two Colombian municipalities, Anapoima and La Mesa. Mosquitoes from 497 rural households in 44 different rural settlements were collected. Pools of about 20 Ae. aegypti females were processed for DENV serotype detection. DENV in mosquitoes was detected in 74% of the analysed settlements with a pool positivity rate of 62%. The estimated individual mosquito infection rate was 4.12% and the minimum infection rate was 33.3/1,000 mosquitoes. All four serotypes were detected; the most frequent being DENV-2 (50%) and DENV-1 (35%). Two-three serotypes were detected simultaneously in separate pools. This is the first report on the co-occurrence of natural DENV infection of mosquitoes in Colombian rural areas. The findings are important for understanding dengue transmission and planning control strategies. A potential latent virus reservoir in rural areas could spill over to urban areas during population movements. Detecting DENV in wild-caught adult mosquitoes should be included in the development of dengue epidemic forecasting models.

Surveys of environmental DNA (eDNA): a new approach to estimate occurrence in Vulnerable manatee populations

USGS Publications Warehouse

Hunter, Margaret; Meigs-Friend, Gaia; Ferrante, Jason; Takoukam Kamla, Aristide; Dorazio, Robert; Keith Diagne, Lucy; Luna, Fabia; Lanyon, Janet M.; Reid, James P.

2018-01-01

Environmental DNA (eDNA) detection is a technique used to non-invasively detect cryptic, low density, or logistically difficult-to-study species, such as imperiled manatees. For eDNA measurement, genetic material shed into the environment is concentrated from water samples and analyzed for the presence of target species. Cytochrome bquantitative PCR and droplet digital PCR eDNA assays were developed for the 3 Vulnerable manatee species: African, Amazonian, and both subspecies of the West Indian (Florida and Antillean) manatee. Environmental DNA assays can help to delineate manatee habitat ranges, high use areas, and seasonal population changes. To validate the assay, water was analyzed from Florida’s east coast containing a high-density manatee population and produced 31564 DNA molecules l-1on average and high occurrence (ψ) and detection (p) estimates (ψ = 0.84 [0.40-0.99]; p = 0.99 [0.95-1.00]; limit of detection 3 copies µl-1). Similar occupancy estimates were produced in the Florida Panhandle (ψ = 0.79 [0.54-0.97]) and Cuba (ψ = 0.89 [0.54-1.00]), while occupancy estimates in Cameroon were lower (ψ = 0.49 [0.09-0.95]). The eDNA-derived detection estimates were higher than those generated using aerial survey data on the west coast of Florida and may be effective for population monitoring. Subsequent eDNA studies could be particularly useful in locations where manatees are (1) difficult to identify visually (e.g. the Amazon River and Africa), (2) are present in patchy distributions or are on the verge of extinction (e.g. Jamaica, Haiti), and (3) where repatriation efforts are proposed (e.g. Brazil, Guadeloupe). Extension of these eDNA techniques could be applied to other imperiled marine mammal populations such as African and Asian dugongs.

Damage detection methodology under variable load conditions based on strain field pattern recognition using FBGs, nonlinear principal component analysis, and clustering techniques

NASA Astrophysics Data System (ADS)

Sierra-Pérez, Julián; Torres-Arredondo, M.-A.; Alvarez-Montoya, Joham

2018-01-01

Structural health monitoring consists of using sensors integrated within structures together with algorithms to perform load monitoring, damage detection, damage location, damage size and severity, and prognosis. One possibility is to use strain sensors to infer structural integrity by comparing patterns in the strain field between the pristine and damaged conditions. In previous works, the authors have demonstrated that it is possible to detect small defects based on strain field pattern recognition by using robust machine learning techniques. They have focused on methodologies based on principal component analysis (PCA) and on the development of several unfolding and standardization techniques, which allow dealing with multiple load conditions. However, before a real implementation of this approach in engineering structures, changes in the strain field due to conditions different from damage occurrence need to be isolated. Since load conditions may vary in most engineering structures and promote significant changes in the strain field, it is necessary to implement novel techniques for uncoupling such changes from those produced by damage occurrence. A damage detection methodology based on optimal baseline selection (OBS) by means of clustering techniques is presented. The methodology includes the use of hierarchical nonlinear PCA as a nonlinear modeling technique in conjunction with Q and nonlinear-T 2 damage indices. The methodology is experimentally validated using strain measurements obtained by 32 fiber Bragg grating sensors bonded to an aluminum beam under dynamic bending loads and simultaneously submitted to variations in its pitch angle. The results demonstrated the capability of the methodology for clustering data according to 13 different load conditions (pitch angles), performing the OBS and detecting six different damages induced in a cumulative way. The proposed methodology showed a true positive rate of 100% and a false positive rate of 1.28% for a 99% of confidence.

Surface-Based Observations of Contrail Occurrence Over the US, Apr. 1993 to Apr. 1994

NASA Technical Reports Server (NTRS)

Minnis, Patrick; Ayers, J. Kirk; Weaver, Steven P.

1997-01-01

Surface observers stationed at 19 U.S. Air Force Bases and Army Air Stations recorded the daytime occurrence of contrails and cloud fraction on an hourly basis for the period April 1993 through April 1994. Each observation uses one of four main categories to report contrails as unobserved, non-persistent, persistent, and indeterminate. Additional classification includes the co-occurrence of cirrus with each report. The data cover much of the continental U.S. including locations near major commercial air routes. The mean annual frequency of occurrence in unobstructed viewing conditions is 13 percent for these sites. Contrail occurrence varied substantially with location and season. Most contrails occurred during the winter months and least during the summer with a pronounced minimum during July. Although nocturnal observations are not available, it appears that the contrails have a diurnal variation that peaks during mid morning over most areas. Contrails were most often observed in areas near major commercial air corridors and least often over areas far removed from the heaviest air traffic. A significant correlation exists between mean contrail frequency and aircraft fuel usage above 7 km suggesting predictive potential for assessing future contrail effects on climate.

Automated classification of dolphin echolocation click types from the Gulf of Mexico.

PubMed

Frasier, Kaitlin E; Roch, Marie A; Soldevilla, Melissa S; Wiggins, Sean M; Garrison, Lance P; Hildebrand, John A

2017-12-01

Delphinids produce large numbers of short duration, broadband echolocation clicks which may be useful for species classification in passive acoustic monitoring efforts. A challenge in echolocation click classification is to overcome the many sources of variability to recognize underlying patterns across many detections. An automated unsupervised network-based classification method was developed to simulate the approach a human analyst uses when categorizing click types: Clusters of similar clicks were identified by incorporating multiple click characteristics (spectral shape and inter-click interval distributions) to distinguish within-type from between-type variation, and identify distinct, persistent click types. Once click types were established, an algorithm for classifying novel detections using existing clusters was tested. The automated classification method was applied to a dataset of 52 million clicks detected across five monitoring sites over two years in the Gulf of Mexico (GOM). Seven distinct click types were identified, one of which is known to be associated with an acoustically identifiable delphinid (Risso's dolphin) and six of which are not yet identified. All types occurred at multiple monitoring locations, but the relative occurrence of types varied, particularly between continental shelf and slope locations. Automatically-identified click types from autonomous seafloor recorders without verifiable species identification were compared with clicks detected on sea-surface towed hydrophone arrays in the presence of visually identified delphinid species. These comparisons suggest potential species identities for the animals producing some echolocation click types. The network-based classification method presented here is effective for rapid, unsupervised delphinid click classification across large datasets in which the click types may not be known a priori.

Automated classification of dolphin echolocation click types from the Gulf of Mexico

PubMed Central

Roch, Marie A.; Soldevilla, Melissa S.; Wiggins, Sean M.; Garrison, Lance P.; Hildebrand, John A.

2017-01-01

Delphinids produce large numbers of short duration, broadband echolocation clicks which may be useful for species classification in passive acoustic monitoring efforts. A challenge in echolocation click classification is to overcome the many sources of variability to recognize underlying patterns across many detections. An automated unsupervised network-based classification method was developed to simulate the approach a human analyst uses when categorizing click types: Clusters of similar clicks were identified by incorporating multiple click characteristics (spectral shape and inter-click interval distributions) to distinguish within-type from between-type variation, and identify distinct, persistent click types. Once click types were established, an algorithm for classifying novel detections using existing clusters was tested. The automated classification method was applied to a dataset of 52 million clicks detected across five monitoring sites over two years in the Gulf of Mexico (GOM). Seven distinct click types were identified, one of which is known to be associated with an acoustically identifiable delphinid (Risso’s dolphin) and six of which are not yet identified. All types occurred at multiple monitoring locations, but the relative occurrence of types varied, particularly between continental shelf and slope locations. Automatically-identified click types from autonomous seafloor recorders without verifiable species identification were compared with clicks detected on sea-surface towed hydrophone arrays in the presence of visually identified delphinid species. These comparisons suggest potential species identities for the animals producing some echolocation click types. The network-based classification method presented here is effective for rapid, unsupervised delphinid click classification across large datasets in which the click types may not be known a priori. PMID:29216184

Lightning Prediction using Electric Field Measurements Associated with Convective Events at a Tropical Location

NASA Astrophysics Data System (ADS)

Jana, S.; Chakraborty, R.; Maitra, A.

2017-12-01

Nowcasting of lightning activities during intense convective events using a single electric field monitor (EFM) has been carried out at a tropical location, Kolkata (22.65oN, 88.45oE). Before and at the onset of heavy lightning, certain changes of electric field (EF) can be related to high liquid water content (LWC) and low cloud base height (CBH). The present study discusses the utility of EF observation to show a few aspects of convective events. Large convective cloud showed by high LWC and low CBH can be detected from EF variation which could be a precursor of upcoming convective events. Suitable values of EF gradient can be used as an indicator of impending lightning events. An EF variation of 0.195 kV/m/min can predict lightning within 17.5 km radius with a probability of detection (POD) of 91% and false alarm rate (FAR) of 8% with a lead time of 45 min. The total number of predicted lightning strikes is nearly 9 times less than that measured by the lightning detector. This prediction technique can, therefore, give an estimate of cloud to ground (CG) and intra cloud (IC) lighting occurrences within the surrounding area. This prediction technique involving POD, FAR and lead time information shows a better prediction capability compared to the techniques reported earlier. Thus an EFM can be effectively used for prediction of lightning events at a tropical location.

Ionospheric Scintillation Activity Over Ilorin, Nigeria

NASA Astrophysics Data System (ADS)

Oladipo, O. A.; Adeniyi, J. O.; Doherty, P. H.; Radicella, S. M.; Adimula, I. A.; Olawepo, A. O.

2018-02-01

Scintillation of radio waves in the L-band frequency is a regular occurrence at the equatorial and auroral regions at night most especially during high solar activity periods. Scintillation is caused by plasma density irregularities, and this could cause loss of lock of Global Navigation Satellite System (GNSS) signals leading to impairment of the applications that rely on this system. A study on the occurrence of scintillation activity over Ilorin (latitude = 8.48°N, longitude = 4.67°W, and geomagnetic latitude = 1.89°S), Nigeria was done using S4 index data from NovAtel GPStation-2 receiver (2009-2012) and NovAtel GPStation-6 receiver (August 2013 to December 2016) which are both located at this station. The solar maximum period of the solar cycle 24 is located well within the period of this investigation; hence, this study provides opportunity to see the occurrence pattern of scintillation during different seasons as well as the pattern from low solar activity to solar maximum. The results obtained showed that scintillation occurs between 21:00 LT and 04:00 LT at the peak of the occurrence in 2014. The time window of occurrence decreases with decrease in solar activity. Similarly, scintillation activity was observed to be more regular during high solar activity and it has two peaks of occurrence in March and October. A solar activity trend was observed in scintillation occurrence; scintillation activity increases with increase in the level of solar activity.

Distribution, occupancy, and habitat correlates of American martens (Martes americana) in Rocky Mountain National Park, Colorado

USGS Publications Warehouse

Baldwin, R.A.; Bender, L.C.

2008-01-01

A clear understanding of habitat associations of martens (Martes americana) is necessary to effectively manage and monitor populations. However, this information was lacking for martens in most of their southern range, particularly during the summer season. We studied the distribution and habitat correlates of martens from 2004 to 2006 in Rocky Mountain National Park (RMNP) across 3 spatial scales: site-specific, home-range, and landscape. We used remote-sensored cameras from early August through late October to inventory occurrence of martens and modeled occurrence as a function of habitat and landscape variables using binary response (BR) and binomial count (BC) logistic regression, and occupancy modeling (OM). We also assessed which was the most appropriate modeling technique for martens in RMNP. Of the 3 modeling techniques, OM appeared to be most appropriate given the explanatory power of derived models and its incorporation of detection probabilities, although the results from BR and BC provided corroborating evidence of important habitat correlates. Location of sites in the western portion of the park, riparian mixed-conifer stands, and mixed-conifer with aspen patches were most frequently positively correlated with occurrence of martens, whereas more xeric and open sites were avoided. Additionally, OM yielded unbiased occupancy values ranging from 91% to 100% and 20% to 30% for the western and eastern portions of RMNP, respectively. ?? 2008 American Society of Mammalogists.

Urban land-use study plan for the National Water-Quality Assessment Program

USGS Publications Warehouse

Squillace, P.J.; Price, C.V.

1996-01-01

This study plan is for Urban Land-Use Studies initiated as part of the U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program. There are two Urban Land-Use Study objectives: (1) Define the water quality in recharge areas of shallow aquifers underlying areas of new residential and commercial land use in large metropolitan areas, and (2) determine which natural and human factors most strongly affect the occurrence of contaminants in these shallow aquifers. To meet objective 1, each NAWQA Study Unit will install and collect water samples from at least 30 randomly located monitoring wells in a metropolitan area. To meet objective 2, aquifer characteristics and land-use information will be documented. This includes particle-size analysis of each major lithologic unit both in the unsaturated zone and in the aquifer near the water table. The percentage of organic carbon also will be determined for each lithologic unit. Geographic information system coverages will be created that document existing land use around the wells. These data will aid NAWQA personnel in relating natural and human factors to the occurrence of contaminants. Water samples for age dating also will be collected from all monitoring wells, but the samples will be stored until the occurrence of contaminants has been determined. Age-date analysis will be done only on those samples that have no detectable concentrations of anthropogenic contaminants.

Co-occurrence of the cyanotoxins BMAA, DABA and anatoxin-a in Nebraska reservoirs, fish, and aquatic plants.

PubMed

Al-Sammak, Maitham Ahmed; Hoagland, Kyle D; Cassada, David; Snow, Daniel D

2014-01-28

Several groups of microorganisms are capable of producing toxins in aquatic environments. Cyanobacteria are prevalent blue green algae in freshwater systems, and many species produce cyanotoxins which include a variety of chemical irritants, hepatotoxins and neurotoxins. Production and occurrence of potent neurotoxic cyanotoxins β-N-methylamino-L-alanine (BMAA), 2,4-diaminobutyric acid dihydrochloride (DABA), and anatoxin-a are especially critical with environmental implications to public and animal health. Biomagnification, though not well understood in aquatic systems, is potentially relevant to both human and animal health effects. Because little is known regarding their presence in fresh water, we investigated the occurrence and potential for bioaccumulation of cyanotoxins in several Nebraska reservoirs. Collection and analysis of 387 environmental and biological samples (water, fish, and aquatic plant) provided a snapshot of their occurrence. A sensitive detection method was developed using solid phase extraction (SPE) in combination with high pressure liquid chromatography-fluorescence detection (HPLC/FD) with confirmation by liquid chromatography-tandem mass spectrometry (LC/MS/MS). HPLC/FD detection limits ranged from 5 to 7 µg/L and LC/MS/MS detection limits were <0.5 µg/L, while detection limits for biological samples were in the range of 0.8-3.2 ng/g depending on the matrix. Based on these methods, measurable levels of these neurotoxic compounds were detected in approximately 25% of the samples, with detections of BMAA in about 18.1%, DABA in 17.1%, and anatoxin-a in 11.9%.

Co-occurrence of the Cyanotoxins BMAA, DABA and Anatoxin-a in Nebraska Reservoirs, Fish, and Aquatic Plants

PubMed Central

Al-Sammak, Maitham Ahmed; Hoagland, Kyle D.; Cassada, David; Snow, Daniel D.

2014-01-01

Several groups of microorganisms are capable of producing toxins in aquatic environments. Cyanobacteria are prevalent blue green algae in freshwater systems, and many species produce cyanotoxins which include a variety of chemical irritants, hepatotoxins and neurotoxins. Production and occurrence of potent neurotoxic cyanotoxins β-N-methylamino-l-alanine (BMAA), 2,4-diaminobutyric acid dihydrochloride (DABA), and anatoxin-a are especially critical with environmental implications to public and animal health. Biomagnification, though not well understood in aquatic systems, is potentially relevant to both human and animal health effects. Because little is known regarding their presence in fresh water, we investigated the occurrence and potential for bioaccumulation of cyanotoxins in several Nebraska reservoirs. Collection and analysis of 387 environmental and biological samples (water, fish, and aquatic plant) provided a snapshot of their occurrence. A sensitive detection method was developed using solid phase extraction (SPE) in combination with high pressure liquid chromatography-fluorescence detection (HPLC/FD) with confirmation by liquid chromatography-tandem mass spectrometry (LC/MS/MS). HPLC/FD detection limits ranged from 5 to 7 µg/L and LC/MS/MS detection limits were <0.5 µg/L, while detection limits for biological samples were in the range of 0.8–3.2 ng/g depending on the matrix. Based on these methods, measurable levels of these neurotoxic compounds were detected in approximately 25% of the samples, with detections of BMAA in about 18.1%, DABA in 17.1%, and anatoxin-a in 11.9%. PMID:24476710

Lighnting detection and tracking with consumer electronics

NASA Astrophysics Data System (ADS)

Kamau, Gilbert; van de Giesen, Nick

2015-04-01

Lightning data is not only important for environment and weather monitoring but also for safety purposes. The AS3935 Franklin Lightning Sensor (AMS, Unterpremstaetten, Austria) is a lightning sensor developed for inclusion in consumer electronics such as watches and mobile phones. The AS3935 is small (4mmx4mm) and relatively cost effective (Eu 5). The downside is that only rough distance estimates are provided, as average power is assumed for every lightning strike. To be able to track lightning, a network of devices that monitor and keep track of occurrences of lightning strikes was developed. A communication interface was established between the sensors, a data logging circuit and a microcontroller. The digital outputs of the lightning sensor and data from a GPS are processed by the microcontroller and logged onto an SD card. The interface program enables sampling parameters such as distance from the lightning strike, time of strike occurrence and geographical location of the device. For archiving and analysis purposes, the data can be transferred from the SD card to a PC and results displayed using a graphical user interface program. Data gathered shows that the device can track the frequency and movement of lightning strikes in an area. The device has many advantages as compared to other lightning sensor stations in terms of huge memory, lower power consumption, small size, greater portability and lower cost. The devices were used in a network around Nairobi, Kenya. Through multi-lateration, lightning strikes could be located with a RMSE of 2 km or better.

Evaluation of the use of Olivella minuta (Gastropoda, Olividae) and Hastula cinerea (Gastropoda, Terebridae) as TBT sentinels for sandy coastal habitats.

PubMed

Petracco, Marcelo; Camargo, Rita Monteiro; Berenguel, Thayana Amorim; de Arruda, Noelle C L Patrício; del Matto, Lygia A; Amado, Lílian Lund; Corbisier, Thais Navajas; Castro, Ítalo Braga; Turra, Alexander

2015-07-01

Tributyltin (TBT) contamination is still recorded in the environment even after its ban in antifouling paints. Since most biomonitors of TBT contamination, through imposex evaluation, are hard-bottom gastropods, the identification of soft-bottom sentinels has become useful for regions where rocky shores and coral reefs are absent. Thus, an evaluation of Olivella minuta and Hastula cinerea as monitors of TBT contamination was performed in two sandy beaches located under influence area of São Sebastião harbor (São Paulo state, Brazil), where previous and simultaneous studies have reported environmental contamination by TBT. In addition, the imposex occurrence in H. cinerea was assessed in an area with low marine traffic (Una beach), also located in São Paulo State. A moderate imposex incidence in O. minuta was detected in Pernambuco (% I = 9.36, RPLI = 4.49 and RPLIstand = 4.27) and Barequeçaba (% I = 2.42, RPLI = 0.36 and RPLIstand = 0.81) beaches, indicating TBT contamination. In contrast, more severe levels of imposex were recorded for H. cinerea in Una beach (% I = 12.45) and mainly in Barequeçaba beach (% I = 98.92, RPLI = 26.65). Our results suggest that O. minuta and H. cinerea have good potential as biomonitors for TBT based on their wide geographical distribution, common occurrence in different coastal sediment habitats, easy collection, and association with TBT-contaminated sediments.

Detecting and Characterizing Genomic Signatures of Positive Selection in Global Populations

PubMed Central

Liu, Xuanyao; Ong, Rick Twee-Hee; Pillai, Esakimuthu Nisha; Elzein, Abier M.; Small, Kerrin S.; Clark, Taane G.; Kwiatkowski, Dominic P.; Teo, Yik-Ying

2013-01-01

Natural selection is a significant force that shapes the architecture of the human genome and introduces diversity across global populations. The question of whether advantageous mutations have arisen in the human genome as a result of single or multiple mutation events remains unanswered except for the fact that there exist a handful of genes such as those that confer lactase persistence, affect skin pigmentation, or cause sickle cell anemia. We have developed a long-range-haplotype method for identifying genomic signatures of positive selection to complement existing methods, such as the integrated haplotype score (iHS) or cross-population extended haplotype homozygosity (XP-EHH), for locating signals across the entire allele frequency spectrum. Our method also locates the founder haplotypes that carry the advantageous variants and infers their corresponding population frequencies. This presents an opportunity to systematically interrogate the whole human genome whether a selection signal shared across different populations is the consequence of a single mutation process followed subsequently by gene flow between populations or of convergent evolution due to the occurrence of multiple independent mutation events either at the same variant or within the same gene. The application of our method to data from 14 populations across the world revealed that positive-selection events tend to cluster in populations of the same ancestry. Comparing the founder haplotypes for events that are present across different populations revealed that convergent evolution is a rare occurrence and that the majority of shared signals stem from the same evolutionary event. PMID:23731540

HF ground scatter from the polar cap: Ionospheric propagation and ground surface effects

NASA Astrophysics Data System (ADS)

Ponomarenko, P. V.; St. Maurice, J.-P.; Hussey, G. C.; Koustov, A. V.

2010-10-01

In addition to being scattered by the ionospheric field-aligned irregularities, HF radar signals can be reflected by the ionosphere toward the Earth and then scattered back to the radar by the rugged ground surface. These ground scatter (GS) echoes are responsible for a substantial part of the returns observed by HF radars making up the Super Dual Auroral Radar Network (SuperDARN). While a GS component is conventionally used in studying ionosphere dynamics (e.g., traveling ionospheric disturbances, ULF waves), its potential in monitoring the state of the scattering surface remains largely unexploited. To fill this gap, we investigated diurnal and seasonal variation of the ground echo occurrence and location from a poleward-looking SuperDARN radar at Rankin Inlet, Canada. Using colocated ionosonde information, we have shown that seasonal and diurnal changes in the high-latitude ionosphere periodically modulate the overall echo occurrence rate and spatial coverage. In addition, characteristics of GS from a particular geographic location are strongly affected by the state of the underlying ground surface. We have shown that (1) ice sheets rarely produce detectable backscatter, (2) mountain ranges are the major source of GS as they can produce echoes at all seasons of the year, and (3) sea surface becomes a significant source of GS once the Arctic sea ice has melted away. Finally, we discuss how the obtained results can expand SuperDARN abilities in monitoring both the ionosphere and ground surface.

Natural occurrence of alternariol and alternariol monomethyl ether in soya beans.

PubMed

Oviedo, M S; Barros, G G; Chulze, S N; Ramirez, M L

2012-08-01

The natural occurrence of alternariol (AOH) and alternariol monomethyl ether (AME) in soya beans harvested in Argentina was evaluated. Both toxins were simultaneously detected by using HPLC analysis coupled with a solid phase extraction column clean-up. Characteristics of this in-house method such as accuracy, precision and detection and quantification limits were defined by means of recovery test with spiked soya bean samples. Out of 50 soya bean samples, 60% showed contamination with the mycotoxins analyzed; among them, 16% were only contaminated with AOH and 14% just with AME. Fifteen of the positive samples showed co-occurrence of both mycotoxins analyzed. AOH was detected in concentrations ranging from 25 to 211 ng/g, whereas AME was found in concentrations ranging from 62 to 1,153 ng/g. Although a limited number of samples were evaluated, this is the first report on the natural occurrence of Alternaria toxins in soya beans and is relevant from the point of view of animal public health.

Chemical-quality reconnaissance of the water and surficial bed material in the Delaware River estuary and adjacent New Jersey tributaries, 1980-81

USGS Publications Warehouse

Hochreiter, Joseph J.

1982-01-01

This report presents chemical-quality data collected from May 1980 to January 1981 at several locations within the Delaware River estuary and selected New Jersey tributaries. Samples of surface water were analyzed Environmental Protection Agency ' priority pollutants, ' including acid extractable, base/neutral extractable and volatile organic compounds, in addition to selected dissolved inorganic constituents. Surficial bed material at selected locations was examined for trace metals, insecticides, polychlorinated biphenyls, and base/neutral extractable organic compounds. Trace levels (1-50 micrograms per liter) of purgeable organic compounds, particularly those associated with the occurrence of hydrocarbons, were found in about 60% of the water samples taken. DDT, DDD, DDE, PCB 's and chlordane are present in most surficial bed material samples. Diazinon was the only organophosphorous insecticide detected in the study (1.6 micrograms per kilogram at one location). High values for select trace metals in bed material were discovered at two locations. Of the 10 sites sampled, the surficial bed material containing the most contamination was found along one cross section of Raccoon Creek at Bridgeport. An additional analysis of Raccoon Creek revealed bed material containing toluene, oil and grease, and trace quantities of 15 base/neutral extractable organic compounds, including polynuclear aromatic hydrocarbons, phthalate esters, and chlorinated benzenes.

Prior knowledge-based approach for associating ...

EPA Pesticide Factsheets

Evaluating the potential human health and/or ecological risks associated with exposures to complex chemical mixtures in the ambient environment is one of the central challenges of chemical safety assessment and environmental protection. There is a need for approaches that can help to integrate chemical monitoring and bio-effects data to evaluate risks associated with chemicals present in the environment. We used prior knowledge about chemical-gene interactions to develop a knowledge assembly model for detected chemicals at five locations near two wastewater treatment plants. The assembly model was used to generate hypotheses about the biological impacts of the chemicals at each location. The hypotheses were tested using empirical hepatic gene expression data from fathead minnows exposed for 12 d at each location. Empirical gene expression data was also mapped to the assembly models to statistically evaluate the likelihood of a chemical contributing to the observed biological responses. The prior knowledge approach was able reasonably hypothesize the biological impacts at one site but not the other. Chemicals most likely contributing to the observed biological responses were identified at each location. Despite limitations to the approach, knowledge assembly models have strong potential for associating chemical occurrence with potential biological effects and providing a foundation for hypothesis generation to guide research and/or monitoring efforts relat

A Laboratory Experimental Study: An FBG-PVC Tube Integrated Device for Monitoring the Slip Surface of Landslides.

PubMed

Wang, Kai; Zhang, Shaojie; Chen, Jiang; Teng, Pengxiao; Wei, Fangqiang; Chen, Qiao

2017-10-30

A new detection device was designed by integrating fiber Bragg grating (FBG) and polyvinyl chloride (PVC) tube in order to monitor the slip surface of a landslide. Using this new FBG-based device, a corresponding slope model with a pre-set slip surface was designed, and seven tests with different soil properties were carried out in laboratory conditions. The FBG sensing fibers were fixed on the PVC tube to measure strain distributions of PVC tube at different elevation. Test results indicated that the PVC tube could keep deformation compatible with soil mass. The new device was able to monitor slip surface location before sliding occurrence, and the location of monitored slip surface was about 1-2 cm above the pre-set slip surface, which basically agreed with presupposition results. The monitoring results are expected to be used to pre-estimate landslide volume and provide a beneficial option for evaluating the potential impact of landslides on shipping safety in the Three Gorges area.

Aflatoxin M1 in human breast milk in southeastern Turkey.

PubMed

Kılıç Altun, Serap; Gürbüz, Semra; Ayağ, Emin

2017-05-01

This study was performed to determine aflatoxin M 1 (AFM 1 ) in human breast milk samples collected in Şanlıurfa, located in Southeastern region of Turkey, and to investigate a possible correlation between AFM 1 occurrence (frequency and levels) and sampling seasons. Human breast milk samples collected in December 2014 and in June 2015 from a total of 74 nursing women, both outpatient and inpatient volunteers in hospitals located in Şanlıurfa, Turkey, were analyzed using competitive enzyme-linked immunosorbent assay (ELISA) for the presence of AFM 1 . AFM 1 was detected in 66 (89.2%) out of 74 samples at an average concentration of 19.0 ± 13.0 ng/l (min.-max., 9.6-80 ng/l). There was a statistically significant difference between December and June concerning AFM 1 levels (p < 0.05). Further detailed studies will be needed to determine the main sources of aflatoxins in food, to establish protection strategies against maternal and infant exposure to these mycotoxins.

A Laboratory Experimental Study: An FBG-PVC Tube Integrated Device for Monitoring the Slip Surface of Landslides

PubMed Central

Zhang, Shaojie; Chen, Jiang; Teng, Pengxiao; Wei, Fangqiang; Chen, Qiao

2017-01-01

A new detection device was designed by integrating fiber Bragg grating (FBG) and polyvinyl chloride (PVC) tube in order to monitor the slip surface of a landslide. Using this new FBG-based device, a corresponding slope model with a pre-set slip surface was designed, and seven tests with different soil properties were carried out in laboratory conditions. The FBG sensing fibers were fixed on the PVC tube to measure strain distributions of PVC tube at different elevation. Test results indicated that the PVC tube could keep deformation compatible with soil mass. The new device was able to monitor slip surface location before sliding occurrence, and the location of monitored slip surface was about 1–2 cm above the pre-set slip surface, which basically agreed with presupposition results. The monitoring results are expected to be used to pre-estimate landslide volume and provide a beneficial option for evaluating the potential impact of landslides on shipping safety in the Three Gorges area. PMID:29084157

Ultrastructural Aspects of the Prenatal Bovine Ovary Differentiation with a Special Focus on the Interstitial Cells.

PubMed

Kenngott, R A-M; Scholz, W; Sinowatz, F

2016-10-01

The aim of this investigation was to study the ultrastructural features during the development of fetal bovine ovaries (crown rump length ranging from 11.4 to 94.0 cm). An interesting observation was the occurrence of big elongated cells containing a variety of electron dense granules and light homogenous vacuoles/bodies. They were located between the stroma cells surrounding the germ cell cord ends, adjacent to the first formed primordial follicles, typically situated near blood vessels. ER alpha and ER beta receptor positive cells could be detected in the same regions by means of immunohistochemistry. Intercellular bridges linked the germ cells nests oogonia. Germ cell cords consisted of centrally located, large, pale oogonia, surrounded by elongated somatic cells with very long cytoplasm extensions. Primordial follicles with flat pale follicular cells could be observed on the inner end of the cords. Extrusions of the outer nuclear membrane could often been recognised in voluminous oocytes. © 2016 Blackwell Verlag GmbH.

On the use of a roving body with rotary inertia to locate cracks in beams

NASA Astrophysics Data System (ADS)

Cannizzaro, F.; De Los Rios, J.; Caddemi, S.; Caliò, I.; Ilanko, S.

2018-07-01

Identifying cracks and damages in structures using measured vibrational characteristics has received considerable attention in the past few decades. The possibility of using frequency changes due to the application of a mass appended to the structure has also been considered. In this paper an analytical proof to show that the natural frequencies of a cracked beam with a roving body possessing mass and rotary inertia will generally change abruptly as the body passes over a crack, provided that the crack permits differential flexural rotations, is presented. A novel explicit closed form solution of the governing equation of an Euler-Bernoulli beam with a roving body possessing mass and rotary inertia, in the presence of multiple cracks is also proposed. The presented exact solution is used to conduct a parametric analysis of cracked beams. Numerical results for natural frequencies are provided and a procedure to exploit the occurrence of frequency shifts to detect and locate each crack, without having to perform any additional calculation, is described.

Source locations for impulsive electric signals seen in the night ionosphere of Venus

NASA Technical Reports Server (NTRS)

Russell, C. T.; Von Dornum, M.; Scarf, F. L.

1989-01-01

A mapping of the rate of occurrence of impulsive VLF noise bursts in Venus' dark low altitude ionosphere, which increases rapidly with decreasing altitude, as a function of latitude and longitude indicates enhanced occurrence rates over Atla. In a 30-sec observing period, there are impulsive signals 70 percent of the time at 160 km in the region of maximum occurrence; the occurrence rates, moreover, increase with decreasing latitude, so that the equatorial rate is of the order of 1.6 times that at 30 deg latitude. These phenomena are in keeping with lightning-generated wave sources.

Cataloging tremor at Kilauea Volcano, Hawaii

NASA Astrophysics Data System (ADS)

Thelen, W. A.; Wech, A.

2013-12-01

Tremor is a ubiquitous seismic feature on Kilauea volcano, which emanates from at least three distinct sources. At depth, intermittent tremor and earthquakes thought to be associated with the underlying plumbing system of Kilauea (Aki and Koyanagi, 1981) occurs approximately 40 km below and 40 km SW of the summit. At the summit of the volcano, nearly continuous tremor is recorded close to a persistently degassing lava lake, which has been present since 2008. Much of this tremor is correlated with spattering at the lake surface, but tremor also occurs in the absence of spattering, and was observed at the summit of the volcano prior to the appearance of the lava lake, predominately in association with inflation/deflation events. The third known source of tremor is in the area of Pu`u `O`o, a vent that has been active since 1983. The exact source location and depth is poorly constrained for each of these sources. Consistently tracking the occurrence and location of tremor in these areas through time will improve our understanding of the plumbing geometry beneath Kilauea volcano and help identify precursory patterns in tremor leading to changes in eruptive activity. The continuous and emergent nature of tremor precludes the use of traditional earthquake techniques for automatic detection and location of seismicity. We implement the method of Wech and Creager (2008) to both detect and localize tremor seismicity in the three regions described above. The technique uses an envelope cross-correlation method in 5-minute windows that maximizes tremor signal coherency among seismic stations. The catalog is currently being built in near-realtime, with plans to extend the analysis to the past as time and continuous data availability permits. This automated detection and localization method has relatively poor depth constraints due to the construction of the envelope function. Nevertheless, the epicenters distinguish activity among the different source regions and serve as starting points for more sophisticated location techniques using cross-correlation and/or amplitude-based locations. The resulting timelines establish a quantitative baseline of behavior for each source to better understand and forecast Kilauea activity.

A data-driven approach to modeling physical fatigue in the workplace using wearable sensors.

PubMed

Sedighi Maman, Zahra; Alamdar Yazdi, Mohammad Ali; Cavuoto, Lora A; Megahed, Fadel M

2017-11-01

Wearable sensors are currently being used to manage fatigue in professional athletics, transportation and mining industries. In manufacturing, physical fatigue is a challenging ergonomic/safety "issue" since it lowers productivity and increases the incidence of accidents. Therefore, physical fatigue must be managed. There are two main goals for this study. First, we examine the use of wearable sensors to detect physical fatigue occurrence in simulated manufacturing tasks. The second goal is to estimate the physical fatigue level over time. In order to achieve these goals, sensory data were recorded for eight healthy participants. Penalized logistic and multiple linear regression models were used for physical fatigue detection and level estimation, respectively. Important features from the five sensors locations were selected using Least Absolute Shrinkage and Selection Operator (LASSO), a popular variable selection methodology. The results show that the LASSO model performed well for both physical fatigue detection and modeling. The modeling approach is not participant and/or workload regime specific and thus can be adopted for other applications. Copyright © 2017 Elsevier Ltd. All rights reserved.

Construction of a Magnetic Induction Antenna to Detect Schumann Resonances

NASA Astrophysics Data System (ADS)

Fernald, Trevr; Bowers, Alexis; Cossel, Raquel; McIntyre, Maxwell; Reid, John, , Dr.

2016-03-01

An antenna was designed and built to detect magnetic field changes in the form of Schumann resonances. This was done in hopes of eventually being able to correlate data with sprite occurrence. A square loop was constructed with one meter sides using 2x4s and was wrapped with six hundred turns of 0.2mm thick copper wire. The antenna was tested in a rural location in northern Pennsylvania, chosen for its isolation and expectations of low electrical noise. Detected signals were filtered using a band-pass filter and observed using an oscilloscope. The signal had too much interference to make it possible to see any unmistakably Schumann character, but a Fourier Transform function made it possible to see the contribution of each component frequency to the overall interference. This function revealed possible presence of Schumann character in the signal, indicating mostly 2nd and 3rd mode Schumann frequencies. The fundamental mode may have been observed as well, but was less consistent and pronounced than the other frequencies. The performance of the filter was somewhat questionable and electrical noise was evident, so further experimentation is necessary.

Cyanobacteria and Cyanotoxins Occurrence and Removal from Five High-Risk Conventional Treatment Drinking Water Plants

PubMed Central

Szlag, David C.; Sinclair, James L.; Southwell, Benjamin; Westrick, Judy A.

2015-01-01

An environmental protection agency EPA expert workshop prioritized three cyanotoxins, microcystins, anatoxin-a, and cylindrospermopsin (MAC), as being important in freshwaters of the United States. This study evaluated the prevalence of potentially toxin producing cyanobacteria cell numbers relative to the presence and quantity of the MAC toxins in the context of this framework. Total and potential toxin producing cyanobacteria cell counts were conducted on weekly raw and finished water samples from utilities located in five US states. An Enzyme-Linked Immunosorbant Assay (ELISA) was used to screen the raw and finished water samples for microcystins. High-pressure liquid chromatography with a photodiode array detector (HPLC/PDA) verified microcystin concentrations and quantified anatoxin-a and cylindrospermopsin concentrations. Four of the five utilities experienced cyanobacterial blooms in their raw water. Raw water samples from three utilities showed detectable levels of microcystins and a fourth utility had detectable levels of both microcystin and cylindrospermopsin. No utilities had detectable concentrations of anatoxin-a. These conventional plants effectively removed the cyanobacterial cells and all finished water samples showed MAC levels below the detection limit by ELISA and HPLC/PDA. PMID:26075379

Brain tumour classification and abnormality detection using neuro-fuzzy technique and Otsu thresholding.

PubMed

Renjith, Arokia; Manjula, P; Mohan Kumar, P

2015-01-01

Brain tumour is one of the main causes for an increase in transience among children and adults. This paper proposes an improved method based on Magnetic Resonance Imaging (MRI) brain image classification and image segmentation approach. Automated classification is encouraged by the need of high accuracy when dealing with a human life. The detection of the brain tumour is a challenging problem, due to high diversity in tumour appearance and ambiguous tumour boundaries. MRI images are chosen for detection of brain tumours, as they are used in soft tissue determinations. First of all, image pre-processing is used to enhance the image quality. Second, dual-tree complex wavelet transform multi-scale decomposition is used to analyse texture of an image. Feature extraction extracts features from an image using gray-level co-occurrence matrix (GLCM). Then, the Neuro-Fuzzy technique is used to classify the stages of brain tumour as benign, malignant or normal based on texture features. Finally, tumour location is detected using Otsu thresholding. The classifier performance is evaluated based on classification accuracies. The simulated results show that the proposed classifier provides better accuracy than previous method.

Gold occurrences in the Greenville 1 degree by 2 degrees Quadrangle, South Carolina, Georgia, and North Carolina

USGS Publications Warehouse

D'Agostino, John P.; Mason, George T.; Zupan, Alan J.W.; Maybin, Arthur H.; German, Jerry M.; Abrams, Charlotte E.

1994-01-01

All of the gold mines, prospects, placers, and occurrences known in the Greenville 1° x 2° quadrangle are tabulated in this report. The table lists, in consecutive order by county (fig. 1), the map number of each feature, which is located either on the accompanying Greenville 1° x 2° quadrangle map or figure 2. The known name of the feature; the 7.5' topographic map on the which the gold site is located (if known, within 25 ft or 7.6 m), the Universal Transverse Mercator (UTM) northing and easting grid coordinates from the appropriate 7.5' topographic map; the commodity; remarks; and references are also listed. Some locations are known, but many sites are not verified and their locations are only approximate. References are listed in References Cited and referred to by number to save space.

Species Distribution 2.0: An Accurate Time- and Cost-Effective Method of Prospection Using Street View Imagery

PubMed Central

Schwoertzig, Eugénie; Millon, Alexandre

2016-01-01

Species occurrence data provide crucial information for biodiversity studies in the current context of global environmental changes. Such studies often rely on a limited number of occurrence data collected in the field and on pseudo-absences arbitrarily chosen within the study area, which reduces the value of these studies. To overcome this issue, we propose an alternative method of prospection using geo-located street view imagery (SVI). Following a standardised protocol of virtual prospection using both vertical (aerial photographs) and horizontal (SVI) perceptions, we have surveyed 1097 randomly selected cells across Spain (0.1x0.1 degree, i.e. 20% of Spain) for the presence of Arundo donax L. (Poaceae). In total we have detected A. donax in 345 cells, thus substantially expanding beyond the now two-centuries-old field-derived record, which described A. donax only 216 cells. Among the field occurrence cells, 81.1% were confirmed by SVI prospection to be consistent with species presence. In addition, we recorded, by SVI prospection, 752 absences, i.e. cells where A. donax was considered absent. We have also compared the outcomes of climatic niche modeling based on SVI data against those based on field data. Using generalized linear models fitted with bioclimatic predictors, we have found SVI data to provide far more compelling results in terms of niche modeling than does field data as classically used in SDM. This original, cost- and time-effective method provides the means to accurately locate highly visible taxa, reinforce absence data, and predict species distribution without long and expensive in situ prospection. At this time, the majority of available SVI data is restricted to human-disturbed environments that have road networks. However, SVI is becoming increasingly available in natural areas, which means the technique has considerable potential to become an important factor in future biodiversity studies. PMID:26751565

Occurrence of azoxystrobin, propiconazole, and selected other fungicides in US streams, 2005-2006

USGS Publications Warehouse

Battaglin, William A.; Sandstrom, Mark W.; Kuivila, Kathryn; Kolpin, Dana W.; Meyer, Michael T.

2011-01-01

Fungicides are used to prevent foliar diseases on a wide range of vegetable, field, fruit, and ornamental crops. They are generally more effective as protective rather than curative treatments, and hence tend to be applied before infections take place. Less than 1% of US soybeans were treated with a fungicide in 2002 but by 2006, 4% were treated. Like other pesticides, fungicides can move-off of fields after application and subsequently contaminate surface water, groundwater, and associated sediments. Due to the constant pressure from fungal diseases such as the recent Asian soybean rust outbreak, and the always-present desire to increase crop yields, there is the potential for a significant increase in the amount of fungicides used on US farms. Increased fungicide use could lead to increased environmental concentrations of these compounds. This study documents the occurrence of fungicides in select US streams soon after the first documentation of soybean rust in the US and prior to the corresponding increase in fungicide use to treat this problem. Water samples were collected from 29 streams in 13 states in 2005 and/or 2006, and analyzed for 12 target fungicides. Nine of the 12 fungicides were detected in at least one stream sample and at least one fungicide was detected in 20 of 29 streams. At least one fungicide was detected in 56% of the 103 samples, as many as five fungicides were detected in an individual sample, and mixtures of fungicides were common. Azoxystrobin was detected most frequently (45% of 103 samples) followed by metalaxyl (27%), propiconazole (17%), myclobutanil (9%), and tebuconazole (6%). Fungicide detections ranged from 0.002 to 1.15 μ/L. There was indication of a seasonal pattern to fungicide occurrence, with detections more common and concentrations higher in late summer and early fall than in spring. At a few sites, fungicides were detected in all samples collected suggesting the potential for season-long occurrence in some streams. Fungicide occurrence appears to be related to fungicide use in the associated drainage basins; however, current use information is generally lacking and more detailed occurrence data are needed to accurately quantify such a relation. Maximum concentrations of fungicides were typically one or more orders of magnitude less than current toxicity estimates for freshwater aquatic organisms or humans; however, gaps in current toxicological understandings of the effects of fungicides in the environment limit these interpretations.

Occurrence of perchlorate in drinking water and seawater in South Korea.

PubMed

Her, Namguk; Jeong, Hyunchan; Kim, Jongsung; Yoon, Yeomin

2011-08-01

Concentrations of perchlorate were determined by both liquid-chromatography-mass spectrometry (LC-MS) and ion chromatography tandem mass spectrometry (IC-MS/MS) in 520 tap-water, 48 bottled-water, and 9 seawater samples obtained or purchased from >100 different locations in South Korea. The method detection limits were 0.013 μg/L for LC-MS and 0.005 μg/L for IC-MS/MS, and the limits of quantification (LOQs) were 0.10 μg/L for LC-MS and 0.032 μg/L for IC-MS/MS. Perchlorate was detected in most (80%) of the tap-water samples, with concentrations higher than the LOQ; the concentrations ranged from <1.0 to 6.1 μg/L (mean 0.56). Perchlorate was detected by IC-MS/MS in many (n = 23) of the bottled-water samples, with concentrations higher then the LOQ, ranging from 0.04 to 0.29 μg/L (mean 0.07 ± 0.01). The concentrations of perchlorate in all seawater samples collected from the various locations were higher than the LOQ, with a mean concentration of 1.15 ± 0.01 μg/L (maximum 6.11 and minimum 0.11). This study provides further evidence that drinking-water sources have been contaminated by perchlorate. To the best of our knowledge, this is the first comprehensive study on perchlorate assessment in drinking water and seawater in South Korea.

Ground-based Nighttime Cloud Detection Using a Commercial Digital Camera: Observations at Manila Observatory (14.64N, 121.07E)

NASA Astrophysics Data System (ADS)

Gacal, G. F. B.; Tan, F.; Antioquia, C. T.; Lagrosas, N.

2014-12-01

Cloud detection during nighttime poses a real problem to researchers because of a lack of optimum sensors that can specifically detect clouds during this time of the day. Hence, lidars and satellites are currently some of the instruments that are being utilized to determine cloud presence in the atmosphere. These clouds play a significant role in the night weather system for the reason that they serve as barriers of thermal radiation from the Earth and thereby reflecting this radiation back to the Earth. This effectively lowers the rate of decreasing temperature in the atmosphere at night. The objective of this study is to detect cloud occurrences at nighttime for the purpose of studying patterns of cloud occurrence and the effects of clouds on local weather. In this study, a commercial camera (Canon Powershot A2300) is operated continuously to capture nighttime clouds. The camera is situated inside a weather-proof box with a glass cover and is placed on the rooftop of the Manila Observatory building to gather pictures of the sky every 5min to observe cloud dynamics and evolution in the atmosphere. To detect pixels with clouds, the pictures are converted from its native JPEG to grayscale format. The pixels are then screened for clouds by looking at the values of pixels with and without clouds. In grayscale format, pixels with clouds have greater pixel values than pixels without clouds. Based on the observations, 0.34 of the maximum pixel value is enough to discern pixels with clouds from pixels without clouds. Figs. 1a & 1b are sample unprocessed pictures of cloudless night (May 22-23, 2014) and cloudy skies (May 23-24, 2014), respectively. Figs.1c and 1d show percentage of occurrence of nighttime clouds on May 22-23 and May 23-24, 2014, respectively. The cloud occurrence in a pixel is defined as the ratio of the number times when the pixel has clouds to the total number of observations. Fig. 1c shows less than 50% cloud occurrence while Fig. 1d shows cloud occurrence more than what is shown in Fig. 1c. These graphs show the capability of the camera to detect and measure the cloud occurrence at nighttime. Continuous collection of nighttime pictures is currently implemented. In regions where there is a dearth of scientific data, the measured nighttime cloud occurrence will serve as a baseline for future cloud studies in this part of the world.

Widespread occurrence and potential for biodegradation of bioactive contaminants in Congaree National Park, USA

USGS Publications Warehouse

Bradley, Paul M.; Battaglin, William A.; Clark, Jimmy M.; Henning, Frank; Hladik, Michelle L.; Iwanowicz, Luke R.; Journey, Celeste A.; Riley, Jeffrey W.; Romanok, Kristin

2017-01-01

Organic contaminants with designed molecular bioactivity, such as pesticides and pharmaceuticals, originate from human and agricultural sources, occur frequently in surface waters, and threaten the structure and function of aquatic and terrestrial ecosystems. Congaree National Park in South Carolina (USA) is a vulnerable park unit due to its location downstream of multiple urban and agricultural contaminant sources and its hydrologic setting, being composed almost entirely of floodplain and aquatic environments. Seventy-two water and sediment samples were collected from 16 sites in Congaree National Park during 2013 to 2015, and analyzed for 199 and 81 targeted organic contaminants, respectively. More than half of these water and sediment analytes were not detected or potentially had natural sources. Pharmaceutical contaminants were detected (49 total) frequently in water throughout Congaree National Park, with higher detection frequencies and concentrations at Congaree and Wateree River sites, downstream from major urban areas. Forty-seven organic wastewater indicator chemicals were detected in water, and 36 were detected in sediment, of which approximately half are distinctly anthropogenic. Endogenous sterols and hormones, which may originate from humans or wildlife, were detected in water and sediment samples throughout Congaree National Park, but synthetic hormones were detected only once, suggesting a comparatively low risk of adverse impacts. Assessment of the biodegradation potentials of 8 14C-radiolabeled model contaminants indicated poor potentials for some contaminants, particularly under anaerobic sediments conditions.

Occurrence of Double Monoclonal Bands on Protein Electrophoresis: An Unusual Finding.

PubMed

Srinivasan, Vishrut K; Bhagat, Priyanka; Bansal, Frainey; Chhabra, Seema

2016-06-01

Various techniques of protein electrophoresis are used for detection of monoclonal proteins/paraproteins in serum and/or urine of patients with monoclonal gammopathies. These are detected as the so-called 'M' bands (monoclonal bands) on serum protein electrophoresis and/or immunofixation electrophoresis. In most cases, a single M-band is detected. However, more than one M-band can be detected in the samples of a minor proportion of patients. This condition is termed as 'double gammopathy' or 'biclonal gammopathy'. A knowledge of such an unusual occurrence is essential for recognition and appropriate interpretation of this entity.

Genetic algorithm for TEC seismo-ionospheric anomalies detection around the time of the Solomon (Mw = 8.0) earthquake of 06 February 2013

NASA Astrophysics Data System (ADS)

Akhoondzadeh, M.

2013-08-01

On 6 February 2013, at 12:12:27 local time (01:12:27 UTC) a seismic event registering Mw 8.0 struck the Solomon Islands, located at the boundaries of the Australian and Pacific tectonic plates. Time series prediction is an important and widely interesting topic in the research of earthquake precursors. This paper describes a new computational intelligence approach to detect the unusual variations of the total electron content (TEC) seismo-ionospheric anomalies induced by the powerful Solomon earthquake using genetic algorithm (GA). The GA detected a considerable number of anomalous occurrences on earthquake day and also 7 and 8 days prior to the earthquake in a period of high geomagnetic activities. In this study, also the detected TEC anomalies using the proposed method are compared to the results dealing with the observed TEC anomalies by applying the mean, median, wavelet, Kalman filter, ARIMA, neural network and support vector machine methods. The accordance in the final results of all eight methods is a convincing indication for the efficiency of the GA method. It indicates that GA can be an appropriate non-parametric tool for anomaly detection in a non linear time series showing the seismo-ionospheric precursors variations.

RINGSAT

NASA Technical Reports Server (NTRS)

DOWDY; GUTHRIE; KUYKENDALL; MARTYN; OKANO; NIEDERMEIER; WILLIAMS

1994-01-01

Radio frequency interference (RFI) presents a serious problem to naval communications. Unauthorized transmissions on the same frequencies that FLTSAT or LEASAT use cause a loss of one or more transponders on a satellite. The problem is not correctable until the emitter is located and turned off, or until it runs off on its own. The present geolocation system cannot deal with the RFI problem adequately. This causes the Navy to lose operational capability and money. The proposed Radio Frequency Interference Navy Geolocation Satellite (RINGSAT) would locate the source of the interference within 3 hours, an outstanding improvement over current equipment. Furthermore, RINGSAT can be built quickly, at minimal cost, and can be used concurrently for other military missions. Currently, geolocation to identify the RFI is done at Naval Space Command. Using single satellite doppler, time delay of arrival, and frequency delay of arrival techniques, it is possible to locate the interfering emitter. However, for the first quarter of fiscal year 1993, about 50 different channels used by the Navy were nonoperational for over 500 hours. Almost 30 percent of the interference occurrences lasted for over 12 hours. In only one quarter of the cases was the interference turned off in less than two_hours either by our detection or on its own.

DIURON OCCURRENCE AND DISTRIBUTION IN SOIL AND SURFACE AND GROUND WATER ASSOCIATED WITH GRASS SEED PRODUCTION

EPA Science Inventory

Diuron (3-(3,4-dichlorophenyl)-1,1-dimethyl urea) is the principal herbicide used in grass seed production. The occurrence and distribution of diuron was investigated at a poorly-drained field site located along an intermittent tributary of Lake Creek in the southern Willamette ...

OCCURRENCE OF METYL TERT-BUTYL ETHER (MTBE) AT FIVE MARINAS IN LAKE TEXOMA

EPA Science Inventory

Occurrence of methyl tert-butyl ether (MTBE) in five marinas was monitored between June 1999 and November 2000 in Lake Texoma located on the border of Oklahoma and Texas. MTBE is a commonly used gasoline additive and a suspected carcinogen. Lake water was collected at loc...

Flashsourcing or Real-Time Mapping of Earthquake Effects from Instantaneous Analysis of the EMSC Website Traffic

NASA Astrophysics Data System (ADS)

Bossu, R.; Gilles, S.; Roussel, F.

2010-12-01

Earthquake response efforts are often hampered by the lack of timely and reliable information on the earthquake impact. Rapid detection of damaging events and production of actionable information for emergency response personnel within minutes of their occurrence are essential to mitigate the human impacts from earthquakes. Economically developed countries deploy dense real-time accelerometric networks in regions of high seismic hazard to constrain scenarios from in-situ data. A cheaper alternative, named flashsourcing, is based on implicit data derived from the analysis of the visits by eyewitnesses, the first informed persons, to websites offering real time earthquake information. We demonstrated in 2004 that widely felt earthquakes generate a surge of traffic, known as a flashcrowd, caused by people rushing websites such as the EMSC’s to find information about the shaking they have just felt. With detailed traffic analysis and metrics, widely felt earthquakes can be detected within one minute of the earthquake’s occurrence. In addition, the geographical area where the earthquake has been felt is automatically mapped within 5 minutes by statistically analysing the IP locations of the eyewitnesses, without using any seismological data. These results have been validated on more than 150 earthquakes by comparing the automatic felt maps with the felt area derived from macroseismic questionnaires. In practice, the felt maps are available before the first location is published by the EMSC. We have also demonstrated the capacity to rapidly detect and map areas of widespread damage by detecting when visitors suddenly end their sessions on the website en masse. This has been successfully applied to time and map the massive power failure which plunged a large part of Chile into darkness in March, 2010. If damage to power and communication lines cannot be discriminated from damage to buildings, the absence of sudden session closures precludes the possibility of heavy damage and provides further constraints to seismic scenarios. To better discriminate in case of large-scale session closure, we propose to analyze cell phone connections, whose networks may remain viable when land lines have gone down. This presentation aims to give an overview of the potential of this technique which is today the fastest way to collect in-situ information on an earthquake’s effects. It also provides insightful information about the actual reaction of the population after experiencing an earthquake. There are indications that the relative level of shaking for a given event could be estimated through the ratio of actual visitors to the number of inhabitants. By focusing on the reaction of the population rather than the parameters of the seismic source, it identifies what is perceived as an important event by the public regardless its magnitude. Typical examples are low magnitude earthquakes located close to large cities, like the M2.8 located beneath Sofia, Bulgaria, on Aug. 27, 2010. Based on implicit data, the results cannot be easily altered, which differs from other user-generated content where reliability assessment remains essential. This mechanism is an extension of complementary crowdsourcing techniques such as online questionnaires, applied on flash crowds, leading to its name flashsourcing.

investigating the use of geophysical techniques to detect hydrocarbon seeps

NASA Astrophysics Data System (ADS)

Somwe, Vincent Tambwe

In the Cement oil field, seeps occur in the Hydrocarbon Induced Diagenetic Aureole (HIDA).This 14 square km diagenetic alteration region is mainly characterized by the: (1) secondary carbonate minerals deposition that tends to form ridges throughout the oil field; (2) disseminated pyrite in the vicinity of the fault zones; (3) uranium occurrence and the change in color pattern from red to bleached red sandstone. Generally the HIDA of the Cement oil field is subdivided into four zones: (1) carbonate cemented sandstone zone (zone 1), (2) altered sandstone zone (zone 2), (3) sulfide zone (zone 3) and (4) unaltered sandstone zone (zone 4). This study investigated the use of geophysical techniques to detect alteration zones over the Cement oil field. Magnetic and electromagnetic data were acquired at 5 m interval using the geometric G858 magnetometer and the Geonics EM-31 respectively. Both total magnetic intensity and bulk conductivity were found to decrease across boundaries between unaltered and altered sandstones. Boundaries between sulfide and carbonate zones, which in most cases were located in fault zones, were found to be characterized by higher magnetic and bulk conductivity readings. The contrast between the background and the highest positive peak was found to be in the range of 0.5-10% for total magnetic intensity and 258-450% for bulk conductivity respectively; suggesting that the detection of hydrocarbon seeps would be more effective with EM techniques. The study suggests that geophysical techniques can be used to delineate contact between the different alteration zones especially where metallic minerals such as pyrite are precipitated. The occurrence of carbonate cemented sandstone in the Cement oil field can be used as a pathfinder for hydrocarbon reservoir. The change in color in the altered sandstone zone can still be useful in the hydrocarbon exploration.

Determining Occurrence Dynamics when False Positives Occur: Estimating the Range Dynamics of Wolves from Public Survey Data.

PubMed

Miller, David A W; Nichols, James D; Gude, Justin A; Rich, Lindsey N; Podruzny, Kevin M; Hines, James E; Mitchell, Michael S

2013-01-01

Large-scale presence-absence monitoring programs have great promise for many conservation applications. Their value can be limited by potential incorrect inferences owing to observational errors, especially when data are collected by the public. To combat this, previous analytical methods have focused on addressing non-detection from public survey data. Misclassification errors have received less attention but are also likely to be a common component of public surveys, as well as many other data types. We derive estimators for dynamic occupancy parameters (extinction and colonization), focusing on the case where certainty can be assumed for a subset of detections. We demonstrate how to simultaneously account for non-detection (false negatives) and misclassification (false positives) when estimating occurrence parameters for gray wolves in northern Montana from 2007-2010. Our primary data source for the analysis was observations by deer and elk hunters, reported as part of the state's annual hunter survey. This data was supplemented with data from known locations of radio-collared wolves. We found that occupancy was relatively stable during the years of the study and wolves were largely restricted to the highest quality habitats in the study area. Transitions in the occupancy status of sites were rare, as occupied sites almost always remained occupied and unoccupied sites remained unoccupied. Failing to account for false positives led to over estimation of both the area inhabited by wolves and the frequency of turnover. The ability to properly account for both false negatives and false positives is an important step to improve inferences for conservation from large-scale public surveys. The approach we propose will improve our understanding of the status of wolf populations and is relevant to many other data types where false positives are a component of observations.

A remote sensing evaluation of potential for sinkhole occurrence

NASA Technical Reports Server (NTRS)

Casper, J.; Ruth, B.; Degner, J. (Principal Investigator)

1981-01-01

The relationship between lowering of the water table and sinkhole development in Pierson and in Hillsborough County, Florida was investigated. The locations of recently developed (1973) collapses were examined with respect to lineaments or fracture traces that are expressed in the terrain and visible in aerial photography and satellite imagery. It was anticipated that these relationships would provide the basis for establishment of criteria for mapping those land areas that have the greatest potential for sinkhole development. A very good correlation was found between mapped lineament intersections and known location of sinkhole occurrences for both study areas. This indicates that lineament and fracture trace mapping may be very useful in locating zones with the greatest potential for sinkhole development. It is further shown that this information is quite beneficial in land use planning applications.

Gear Crack Propagation Path Studies: Guidelines for Ultra-Safe Design

NASA Technical Reports Server (NTRS)

Lewicki, David G.

2001-01-01

Design guidelines have been established to prevent catastrophic rim fracture failure modes when considering gear tooth bending fatigue. Analysis was performed using the finite element method with principles of linear elastic fracture mechanics. Crack propagation paths were predicted for a variety of gear tooth and rim configurations. The effects of rim and web thicknesses, initial crack locations, and gear tooth geometry factors such as diametral pitch, number of teeth, pitch radius, and tooth pressure angle were considered. Design maps of tooth/rim fracture modes including effects of gear geometry, applied load, crack size, and material properties were developed. The occurrence of rim fractures significantly increased as the backup ratio (rim thickness divided by tooth height) decreased. The occurrence of rim fractures also increased as the initial crack location was moved down the root of the tooth. Increased rim and web compliance increased the occurrence of rim fractures. For gears with constant pitch radii, coarser-pitch teeth increased the occurrence of tooth fractures over rim fractures. Also, 25 deg pressure angle teeth had an increased occurrence of tooth fractures over rim fractures when compared to 20 deg pressure angle teeth. For gears with constant number of teeth or gears with constant diametral pitch, varying size had little or no effect on crack propagation paths.

Relationship between incidence of gastric dilatation-volvulus and biometeorologic events in a population of military working dogs.

PubMed

Herbold, John R; Moore, George E; Gosch, Terry L; Bell, B Sue

2002-01-01

To calculate the monthly incidence of gastric dilatation-volvulus (GDV) in a population of military working dogs during a 5-year period and determine whether there was an association with synoptic climatologic indices. Medical records of all military working dogs housed at Lackland Air Force Base,Tex, from Jan 1, 1993 to Dec 31, 1997. Confirmed cases of GDV were identified from evaluation of medical records and used to calculate incidence of GDV. Factor analysis of local climatologic data was used to classify each day into 1 of 8 meteorologically homogeneous types of days for this location. Occurrence of GDV was compared with frequency of occurrence of synoptic climatologic days. 48 cases of GDV were identified from January 1993 through December 1997 Mean monthly incidence was 2.5 cases/1,000 dogs at risk (range, 0 to 18.5 cases/1,000 dogs; median, 2.5 cases/1,000 dogs). A seasonal increase in incidence of GDV was detected, because half of the episodes were during November, December, and January. An association with a specific synoptic climatologic day was not detected. Seasonal fluctuations in incidence of GDV may be associated with external factors that precipitate physiologic changes resulting in GDV. Although a specific cause-effect relationship was not documented, clinicians must be alert for the potential of seasonal variation in incidence of GDV and accordingly heighten their index of suspicion for the condition, particularly in populations of dogs that are predisposed to development of GDV.

Opportunistically collected data reveal habitat selection by migrating Whooping Cranes in the U.S. Northern Plains

USGS Publications Warehouse

Niemuth, Neil D.; Ryba, Adam J.; Pearse, Aaron T.; Kvas, Susan M.; Brandt, David; Wangler, Brian; Austin, Jane; Carlisle, Martha J.

2018-01-01

The Whooping Crane (Grus americana) is a federally endangered species in the United States and Canada that relies on wetland, grassland, and cropland habitat during its long migration between wintering grounds in coastal Texas, USA, and breeding sites in Alberta and Northwest Territories, Canada. We combined opportunistic Whooping Crane sightings with landscape data to identify correlates of Whooping Crane occurrence along the migration corridor in North Dakota and South Dakota, USA. Whooping Cranes selected landscapes characterized by diverse wetland communities and upland foraging opportunities. Model performance substantially improved when variables related to detection were included, emphasizing the importance of accounting for biases associated with detection and reporting of birds in opportunistic datasets. We created a predictive map showing relative probability of occurrence across the study region by applying our model to GIS data layers; validation using independent, unbiased locations from birds equipped with platform transmitting terminals indicated that our final model adequately predicted habitat use by migrant Whooping Cranes. The probability map demonstrated that existing conservation efforts have protected much top-tier Whooping Crane habitat, especially in the portions of North Dakota and South Dakota that lie east of the Missouri River. Our results can support species recovery by informing prioritization for acquisition and restoration of landscapes that provide safe roosting and foraging habitats. Our results can also guide the siting of structures such as wind towers and electrical transmission and distribution lines, which pose a strike and mortality risk to migrating Whooping Cranes.

The occurrence and wave properties of H⁺-, He⁺-, and O⁺-band EMIC waves observed by the Van Allen Probes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Saikin, A. A.; Zhang, J. -C.; Allen, R. C.

2015-09-26

We perform a statistical study of electromagnetic ion cyclotron (EMIC) waves detected by the Van Allen Probes mission to investigate the spatial distribution of their occurrence, wave power, ellipticity, and normal angle. The Van Allen Probes have been used which allow us to explore the inner magnetosphere (1.1 to 5.8 RE). Magnetic field measurements from the Electric and Magnetic Field Instrument Suite and Integrated Science on board the Van Allen Probes are used to identify EMIC wave events for the first 22 months of the mission operation (8 September 2012 to 30 June 2014). EMIC waves are examined in H⁺-,more » He⁺-, and O⁺-bands. Over 700 EMIC wave events have been identified over the three different wave bands (265 H⁺-band events, 438 He⁺-band events, and 68 O⁺-band events). EMIC wave events are observed between L = 2 – 8, with over 140 EMIC wave events observed below L = 4. The results show that H⁺-band EMIC waves have two peak magnetic local time (MLT) occurrence regions: pre-noon (09:00 < MLT ≤ 12:00) and afternoon (15:00 < MLT ≤ 17:00) sectors. He⁺-band EMIC waves feature an overall stronger dayside occurrence. O⁺-band EMIC waves have one peak region located in the morning sector at lower L shells (L < 4). He⁺-band EMIC waves average the highest wave power overall (>0.1 nT²/Hz), especially in the afternoon sector. Ellipticity observations reveal that linearly polarized EMIC waves dominate in lower L shells.« less

Are We Predicting the Actual or Apparent Distribution of Temperate Marine Fishes?

PubMed Central

Monk, Jacquomo; Ierodiaconou, Daniel; Harvey, Euan; Rattray, Alex; Versace, Vincent L.

2012-01-01

Planning for resilience is the focus of many marine conservation programs and initiatives. These efforts aim to inform conservation strategies for marine regions to ensure they have inbuilt capacity to retain biological diversity and ecological function in the face of global environmental change – particularly changes in climate and resource exploitation. In the absence of direct biological and ecological information for many marine species, scientists are increasingly using spatially-explicit, predictive-modeling approaches. Through the improved access to multibeam sonar and underwater video technology these models provide spatial predictions of the most suitable regions for an organism at resolutions previously not possible. However, sensible-looking, well-performing models can provide very different predictions of distribution depending on which occurrence dataset is used. To examine this, we construct species distribution models for nine temperate marine sedentary fishes for a 25.7 km2 study region off the coast of southeastern Australia. We use generalized linear model (GLM), generalized additive model (GAM) and maximum entropy (MAXENT) to build models based on co-located occurrence datasets derived from two underwater video methods (i.e. baited and towed video) and fine-scale multibeam sonar based seafloor habitat variables. Overall, this study found that the choice of modeling approach did not considerably influence the prediction of distributions based on the same occurrence dataset. However, greater dissimilarity between model predictions was observed across the nine fish taxa when the two occurrence datasets were compared (relative to models based on the same dataset). Based on these results it is difficult to draw any general trends in regards to which video method provides more reliable occurrence datasets. Nonetheless, we suggest predictions reflecting the species apparent distribution (i.e. a combination of species distribution and the probability of detecting it). Consequently, we also encourage researchers and marine managers to carefully interpret model predictions. PMID:22536325

Occurrence of pesticides in five rivers of the Mississippi Embayment Study Unit, 1996-98

USGS Publications Warehouse

Coupe, Richard H.

2000-01-01

The occurrence and temporal distribution of more than 80 pesticides and pesticide metabolites were determined in five rivers of the Mississippi Embayment National Water-Quality Assessment study unit from February 1996 through January 1998. More than 230 samples were collected and analyzed during the 2-year study. The five rivers sampled included three rivers with small, primarily agricultural watersheds; one river with a small urban watershed in Memphis, Tennessee; and one large river with mixed land use (row-crop agriculture, pasture, forest, and urban). Pesticides, usually herbicides, were frequently detected in water samples from every river. Insecticides were frequently detected (chlorpyrifos and diazinon in all samples) only in the river that drains the urban watershed. The occurrence of pesticides in surface water varied among the agricultural watersheds as well as between the agricultural and urban watersheds. The pesticides detected in the rivers that drain the agricultural watersheds were related to the major crop types cultivated in the watershed?corn is mostly grown in the northern part of the study unit, whereas cotton and rice are mostly grown in the southern part. The occurrence of pesticides in the Yazoo River, which drains the mixed land-use watershed, was similar to pesticide occurrence in the rivers that drain smaller agricultural watersheds, although concentrations were lower in the Yazoo River. Likewise, simazine, which was detected in all urban stream samples, was also detected in all Yazoo River samples, but in lower concentrations. The aquatic-life criteria for diazinon and chlorpyrifos was exceeded in 24 of 25 and 12 of 25 urban river samples, respectively, but only once or twice in agricultural and mixed-use watershed samples. Atrazine exceeded the aquatic-life criterion in about 20 percent of the samples from each river, particularly in the spring following pesticide application.

Occurrence of aflatoxin M₁ in commercial pasteurized milk samples in Sari, Mazandaran province, Iran.

PubMed

Mohammadi, Hamidreza; Shokrzadeh, Mohammad; Aliabadi, Zahra; Riahi-Zanjani, Bamdad

2016-05-01

The frequency and levels of aflatoxin M1 (AFM1) in pasteurized milk samples in Sari, located in Mazandaran province, Iran, were determined by enzyme immunoassay. Seventy-six samples of pasteurized milk from different retail stores were randomly collected over four seasons during the year 2015. AFM1 contamination was detected in all milk samples. The mean concentration of aflatoxin M1 was 65.8 ng/l, with a range of 11.7-106.6 ng/l. The highest AFM1 level was detected in milk samples collected during spring. Forty-six (60.53 %) samples had AFM1 levels that exceeded the maximum acceptable levels (50 ng/l) recommended by the European Union (EU). Comparison of these results with previously published data for AFM1 in milk in Iran shows that the percentage of samples exceeding the EU maximum level is consistently high over the years, indicating a general problem related to AFB1 contamination in dairy feedingstuff.

PCR and ELISA (VIDAS ECO O157®) Escherichia coli O157:H7 identification in Minas Frescal cheese commercialized in Goiânia, GO

PubMed Central

Carvalho, Rosangela Nunes; de Oliveira, Antonio Nonato; de Mesquita, Albenones José; Minafra e Rezende, Cíntia Silva; de Mesquita, Adriano Queiroz; Romero, Rolando Alfredo Mazzoni

2014-01-01

Escherichia coli O157:H7 has been incriminated in food poisoning outbreaks and sporadic cases of hemorrhagic colitis and hemolytic uremic syndrome in many countries. Considering the high susceptibility of Minas Frescal cheese to contamination by E. coli O157:H7, the aim of this study was to determine the occurrence of this pathogen through PCR (Polymerase Chain Reaction) and ELISA (VIDAS ECO O157®, bioMérieux, Lyon, France) test. Thirty cheese samples manufactured by artisan farmhouse producers were collected from open-air markets in Goiânia and thirty from industries under Federal Inspection located in Goiás State which trade their products in supermarkets in Goiânia. E. coli O157:H7 was detected in 6.67% samples collected in open air markets using ELISA, and 23,33% with PCR. The pathogen was not detected in samples from industries under Federal Inspection. PMID:24948907

Detection of Cercopithifilaria bainae in western Romania.

PubMed

Andersson, Martin O; Chitimia-Dobler, Lidia

2017-11-01

Cercopithifilaria species are tick-transmitted filarial parasites of mammals. In Europe, three Cercopithifilaria spp. are known to parasitize dogs, all occurring mainly in the Mediterranean countries. In Romania, Cercopithifilaria bainae has been reported in a single dog in eastern Romania but the occurrence in other parts of the country is not known. To further elucidate the geographic distribution of Cercopithifilaria spp. infection, 544 ticks were collected from dogs in several locations across Romania. The presence of Cercopithifilaria spp. was investigated with real-time PCR. A single Dermacentor reticulatus female tick was found to be infected with Cercopithifilaria bainae. The finding in the present study is geographically separated from the previous finding in Romania by 800 km, as well as by the Carpathian mountain range. Hence, C. bainae is more geographically widespread in Romania than previously recognized. However, the single detection does suggest that infection is rather uncommon in Romanian dogs. Nevertheless, further studies on Cercopithifilaria spp. distribution and prevalence are needed.

Deep sequencing reveals double mutations in cis of MPL exon 10 in myeloproliferative neoplasms.

PubMed

Pietra, Daniela; Brisci, Angela; Rumi, Elisa; Boggi, Sabrina; Elena, Chiara; Pietrelli, Alessandro; Bordoni, Roberta; Ferrari, Maurizio; Passamonti, Francesco; De Bellis, Gianluca; Cremonesi, Laura; Cazzola, Mario

2011-04-01

Somatic mutations of MPL exon 10, mainly involving a W515 substitution, have been described in JAK2 (V617F)-negative patients with essential thrombocythemia and primary myelofibrosis. We used direct sequencing and high-resolution melt analysis to identify mutations of MPL exon 10 in 570 patients with myeloproliferative neoplasms, and allele specific PCR and deep sequencing to further characterize a subset of mutated patients. Somatic mutations were detected in 33 of 221 patients (15%) with JAK2 (V617F)-negative essential thrombocythemia or primary myelofibrosis. Only one patient with essential thrombocythemia carried both JAK2 (V617F) and MPL (W515L). High-resolution melt analysis identified abnormal patterns in all the MPL mutated cases, while direct sequencing did not detect the mutant MPL in one fifth of them. In 3 cases carrying double MPL mutations, deep sequencing analysis showed identical load and location in cis of the paired lesions, indicating their simultaneous occurrence on the same chromosome.

Status and understanding of groundwater quality in the Cascade Range and Modoc Plateau study unit, 2010: California GAMA Priority Basin Project

USGS Publications Warehouse

Fram, Miranda S.; Shelton, Jennifer L.

2015-01-01

Organic constituents were not detected at high or moderate RCs, and the occurrence of low organic constituents at low RCs ranged from 27 percent to 73 percent of the primary aquifers system in the six study areas. The Shasta Valley and Mount Shasta Volcanic study area had significantly greater occurrence of low RCs of herbicides compared to all of the other study areas, which could reflect the greater prevalence of modern groundwater in the Shasta Valley and Mount Shasta Volcanic study area and the presence of potential sources of herbicides, including applications to timberlands and roadside rights-of-way. The Eastside Sacramento Valley study area had the greatest occurrence of low concentrations of chloroform, and chloroform occurrence was most strongly associated with the combination of septic-tank density greater than two tanks per square kilometer and urban land use greater than 10 percent within a radius of 500 meters of the well. These conditions were most prevalent in the Eastside Sacramento Valley study area. The detection frequency of low concentrations of perchlorate was consistent with the probability of occurrence expected under natural conditions, except in the Eastside Sacramento Valley study area, where detection frequencies were much higher than expected and could not be explained by known anthropogenic sources of perchlorate.

Latitudinal variability in the seroprevalence of antibodies against Toxoplasma gondii in non-migrant and Arctic migratory geese.

PubMed

Sandström, Cecilia A M; Buma, Anita G J; Hoye, Bethany J; Prop, Jouke; van der Jeugd, Henk; Voslamber, Berend; Madsen, Jesper; Loonen, Maarten J J E

2013-05-01

Toxoplasma gondii is an intracellular coccidian parasite found worldwide and is known to infect virtually all warm-blooded animals. It requires a cat (family Felidae) to complete its full life cycle. Despite the absence of wild felids on the Arctic archipelago of Svalbard, T. gondii has been found in resident predators such as the arctic fox and polar bear. It has therefore been suggested that T. gondii may enter this ecosystem via migratory birds. The objective of this study was to identify locations where goose populations may become infected with T. gondii, and to investigate the dynamics of T. gondii specific antibodies. Single blood samples of both adults and juveniles were collected from selected goose species (Anser anser, A. brachyrhynchus, Branta canadensis, B. leucopsis) at Arctic brood-rearing areas in Russia and on Svalbard, and temperate wintering grounds in the Netherlands and Denmark (migratory populations) as well as temperate brood-rearing grounds (the Netherlands, non-migratory populations). A modified agglutination test was used on serum, for detection of antibodies against T. gondii. Occasional repeated annual sampling of individual adults was performed to determine the antibody dynamics. Adults were found seropositive at all locations (Arctic and temperate, brood-rearing and wintering grounds) with low seroprevalence in brood-rearing birds on temperate grounds. As no juvenile geese were found seropositive at any brood-rearing location, but nine month old geese were found seropositive during spring migration we conclude that geese, irrespective of species and migration, encounter T. gondii infection in wintering areas. In re-sampled birds on Svalbard significant seroreversion was observed, with 42% of seropositive adults showing no detectable antibodies after 12 months, while the proportion of seroconversion was only 3%. Modelled variation of seroprevalence with field data on antibody longevity and parasite transmission suggests seroprevalence of a population within a range of 5.2-19.9%, in line with measured values. The high occurrence of seroreversion compared to the low occurrence of seroconversion hampers analysis of species- or site-specific patterns, but explains the absence of an increase in seroprevalence with age and the observed variation in antibody titre. These findings imply that even though infection rate is low, adults introduce T. gondii to the high Arctic ecosystem following infection in temperate regions. Copyright © 2013 Elsevier B.V. All rights reserved.

Using the NASA NEESPI Portal Data to Study Land, Climate, and Socio-Economic Changes in Northern Eurasia

NASA Technical Reports Server (NTRS)

Leptoukh, Gregory; Shen, Suhung; Csiszar, Ivan; Romanov, Peter; Loboda, Tatiana; Gerasimov, Irina

2008-01-01

A large number of fires detected in July of 2003 - a nearly 200-time increase in fire detections compared to other years during 2001-2006. despite the summer monsoon suppression of large fire occurrence. Traditional vegetation indices (NDVI and EVI) included in operational fire danger assessment provide little information on the fuel state in this ecosystem pre- or post-fire. No considerable differences in surface temperature and soil moisture in July were observed between the catastrophic year of 2003 and the two subsequent years of low summer fire occurrence of 2004 and 2005. However, the temporal analysis indicates that dry spring conditions in 2003 (detected through low soil moisture measurements in April and May) may have led to a stressed vegetative state and created conditions conducive to catastrophic fire occurrence.

Occurrence of cyanobacteria, microcystin, and taste-and-odor compounds in Cheney Reservoir, Kansas, 2001-16

USGS Publications Warehouse

Graham, Jennifer L.; Foster, Guy M.; Williams, Thomas J.; Kramer, Ariele R.; Harris, Theodore D.

2017-03-31

Cheney Reservoir, located in south-central Kansas, is one of the primary drinking-water supplies for the city of Wichita and an important recreational resource. Since 1990, cyanobacterial blooms have been present occasionally in Cheney Reservoir, resulting in increased treatment costs and decreased recreational use. Cyanobacteria, the cyanotoxin microcystin, and the taste-and-odor compounds geosmin and 2-methylisoborneol have been measured in Cheney Reservoir by the U.S. Geological Survey, in cooperation with the city of Wichita, for about 16 years. The purpose of this report is to describe the occurrence of cyanobacteria, microcystin, and taste-and-odor compounds in Cheney Reservoir during May 2001 through June 2016 and to update previously published logistic regression models that used continuous water-quality data to estimate the probability of microcystin and geosmin occurrence above relevant thresholds.Cyanobacteria, microcystin, and geosmin were detected in about 84, 52, and 31 percent of samples collected in Cheney Reservoir during May 2001 through June 2016, respectively. 2-methylisoborneol was less common, detected in only 3 percent of samples. Microcystin and geosmin concentrations exceeded advisory values of concern more frequently than cyanobacterial abundance; therefore, cyanobacteria are not a good indicator of the presence of these taste-and-odor compounds in Cheney Reservoir. Broad seasonal patterns in cyanobacteria and microcystin were evident, though abundance and concentration varied by orders of magnitude across years. Cyanobacterial abundances generally peaked in late summer or early fall (August through October), and smaller peaks were observed in winter (January through February). In a typical year, microcystin was first detected in June or July, increased to its seasonal maxima in the summer (July through September), and then decreased. Seasonal patterns in geosmin were less consistent than cyanobacteria and microcystin, but geosmin typically had a small peak during winter (January through March) during most years and a large peak during summer (July through September) during some years. Though the relation between cyanobacterial abundance and microcystin and geosmin concentrations was positive, overall correlations were weak, likely because production is strain-specific and cyanobacterial strain composition may vary substantially over time. Microcystin often was present without taste-and-odor compounds. By comparison, where taste-and-odor compounds were present, microcystin frequently was detected. Taste-and-odor compounds, therefore, may be used as indicators that microcystin may be present; however, microcystin was present without taste-and-odor compounds, so taste or odor alone does not provide sufficient warning to ensure human-health protection.Logistic regression models that estimate the probability of microcystin occurrence at concentrations greater than or equal to 0.1 micrograms per liter and geosmin occurrence at concentrations greater than or equal to 5 nanograms per liter were developed. Models were developed using the complete dataset (January 2003 through June 2016 for microcystin [14-year dataset]; May 2001 through June 2016 for geosmin [16-year dataset]) and an abbreviated 4-year dataset (January 2013 through June 2016 for microcystin and geosmin). Performance of the newly developed models was compared with previously published models that were developed using data collected during May 2001 through December 2009. A seasonal component and chlorophyll fluorescence (a surrogate for algal biomass) were the explanatory variables for microcystin occurrence at concentrations greater than or equal to 0.1 micrograms per liter in all models. All models were relatively robust, though the previously published and 14-year models performed better over time; however, as a tool to estimate microcystin occurrence at concentrations greater than or equal to 0.1 micrograms per liter in a real-time notification system near the Cheney Dam, the 4-year model is most representative of recent (2013 through 2016) conditions. All models for geosmin occurrence at concentrations greater than or equal to 5 nanograms per liter had different explanatory variables and model forms. The previously published and 16-year models were not robust over time, likely because of changing environmental conditions and seasonal patterns in geosmin occurrence. By comparison, the abbreviated 4-year model may be a useful tool to estimate geosmin occurrence at concentrations greater than or equal to 5 nanograms per liter in a real-time notification system near the Cheney Dam. The better performance of the abbreviated 4-year geosmin model during 2013 through 2016 relative to the previously published and 16-year models demonstrates the need for continuous reevaluation of models estimating the probability of occurrence.

Occurrence of dichloroacetamide herbicide safeners and co-applied herbicides in midwestern U.S. streams

USGS Publications Warehouse

Woodward, Emily; Hladik, Michelle; Kolpin, Dana W.

2018-01-01

Dichloroacetamide safeners (e.g., AD-67, benoxacor, dichlormid, and furilazole) are co-applied with chloroacetanilide herbicides to protect crops from herbicide toxicity. While such safeners have been used since the early 1970s, there are minimal data about safener usage, occurrence in streams, or potential ecological effects. This study focused on one of these research gaps, occurrence in streams. Seven Midwestern U.S. streams (five in Iowa and two in Illinois), with extensive row-crop agriculture, were sampled at varying frequencies from spring 2016 through summer 2017. All four safeners were detected at least once; furilazole was the most frequently detected (31%), followed by benoxacor (29%), dichlormid (15%), and AD-67 (2%). The maximum concentrations ranged from 42 to 190 ng/L. Stream detections and concentrations of safeners appear to be driven by a combination of timing of application (spring following herbicide application) and precipitation events. Detected concentrations were below known toxicity levels for aquatic organisms.

Occurrence of antibiotic compounds in source water and finished drinking water from the upper Scioto River Basin, Ohio, 2005-6

USGS Publications Warehouse

Finnegan, Dennis P.; Simonson, Laura A.; Meyer, Michael T.

2010-01-01

The occurrence of antibiotics in surface water and groundwater in urban basins has become a topic of increasing interest in recent years. Little is known about the occurrence, fate, or transport of these compounds and the possible health effects in humans and aquatic life. The U.S. Geological Survey, in cooperation with the City of Columbus, Division of Power and Water, did a study to provide a synoptic view of the occurrence of antibiotics in source and finished waters in the upper Scioto River Basin. Water samples were collected seasonally-winter (December 2005), spring (May 2006), summer (August 2006) and fall (October 2006)-at five surface-water sites, one groundwater site, and three water-treatment plants (WTPs). Within the upper Scioto River Basin, sampling at each WTP involved two sampling sites: a source-water intake site and a finished-water site. One or more antibiotics were detected at 11 of the 12 sampling sites. Of the 49 targeted antibiotic compounds, 12 (24 percent) were detected at least one time for a total of 61 detections overall. These compounds were azithromycin, tylosin, erythromycin-H2O, erythromycin, roxithromycin, ciprofloxacin, ofloxacin, sulfamethazine, sulfamethoxazole, iso-chlorotetracycline, lincomycin, and trimethoprim. Detection results were at low levels, with an overall median of 0.014 (u or mu)g/L. Hap Cremean WTP had the fewest detections, with two source-water detections of sulfamethoxazole and azithromycin and no detections in the finished water. Of the total of 61 detections, 31 were in the winter sample run. Sulfamethoxazale and azithromycin detections represent 41 percent of all antibiotic detections. Azithromycin was detected only in the winter sample. Some antibiotics, such as those in the quinoline and tetracycline families, dissipate more quickly in warm water, which may explain why they were detected in the cool months (winter, spring, and fall) and not in the summer. Antibiotic data collected during this study were compared to antibiotic data collected in previous national, regional, and local studies. Many of the same antibiotic compounds detected in the upper Scioto River Basin also were detected in those investigations.

Potential interactions among disease, pesticides, water quality and adjacent land cover in amphibian habitats in the United States.

PubMed

Battaglin, W A; Smalling, K L; Anderson, C; Calhoun, D; Chestnut, T; Muths, E

2016-10-01

To investigate interactions among disease, pesticides, water quality, and adjacent land cover, we collected samples of water, sediment, and frog tissue from 21 sites in 7 States in the United States (US) representing a variety of amphibian habitats. All samples were analyzed for >90 pesticides and pesticide degradates, and water and frogs were screened for the amphibian chytrid fungus Batrachochytrium dendrobatidis (Bd) using molecular methods. Pesticides and pesticide degradates were detected frequently in frog breeding habitats (water and sediment) as well as in frog tissue. Fungicides occurred more frequently in water, sediment, and tissue than was expected based upon their limited use relative to herbicides or insecticides. Pesticide occurrence in water or sediment was not a strong predictor of occurrence in tissue, but pesticide concentrations in tissue were correlated positively to agricultural and urban land, and negatively to forested land in 2-km buffers around the sites. Bd was detected in water at 45% of sites, and on 34% of swabbed frogs. Bd detections in water were not associated with differences in land use around sites, but sites with detections had colder water. Frogs that tested positive for Bd were associated with sites that had higher total fungicide concentrations in water and sediment, but lower insecticide concentrations in sediments relative to frogs that were Bd negative. Bd concentrations on frog swabs were positively correlated to dissolved organic carbon, and total nitrogen and phosphorus, and negatively correlated to pH and water temperature. Data were collected from a range of locations and amphibian habitats and represent some of the first field-collected information aimed at understanding the interactions between pesticides, land use, and amphibian disease. These interactions are of particular interest to conservation efforts as many amphibians live in altered habitats and may depend on wetlands embedded in these landscapes to survive. Published by Elsevier B.V.

Mapping the Global Emergence of Batrachochytrium dendrobatidis, the Amphibian Chytrid Fungus

PubMed Central

Ronnenberg, Kathryn L.; Powell, Christopher I.; Walker, Susan F.; Bielby, Jon; Garner, Trenton W. J.; Weaver, George

2013-01-01

The rapid worldwide emergence of the amphibian pathogen Batrachochytrium dendrobatidis (Bd) is having a profound negative impact on biodiversity. However, global research efforts are fragmented and an overarching synthesis of global infection data is lacking. Here, we provide results from a community tool for the compilation of worldwide Bd presence and report on the analyses of data collated over a four-year period. Using this online database, we analysed: 1) spatial and taxonomic patterns of infection, including amphibian families that appear over- and under-infected; 2) relationships between Bd occurrence and declining amphibian species, including associations among Bd occurrence, species richness, and enigmatic population declines; and 3) patterns of environmental correlates with Bd, including climate metrics for all species combined and three families (Hylidae, Bufonidae, Ranidae) separately, at both a global scale and regional (U.S.A.) scale. These associations provide new insights for downscaled hypothesis testing. The pathogen has been detected in 52 of 82 countries in which sampling was reported, and it has been detected in 516 of 1240 (42%) amphibian species. We show that detected Bd infections are related to amphibian biodiversity and locations experiencing rapid enigmatic declines, supporting the hypothesis that greater complexity of amphibian communities increases the likelihood of emergence of infection and transmission of Bd. Using a global model including all sampled species, the odds of Bd detection decreased with increasing temperature range at a site. Further consideration of temperature range, rather than maximum or minimum temperatures, may provide new insights into Bd-host ecology. Whereas caution is necessary when interpreting such a broad global dataset, the use of our pathogen database is helping to inform studies of the epidemiology of Bd, as well as enabling regional, national, and international prioritization of conservation efforts. We provide recommendations for adaptive management to enhance the database utility and relevance. PMID:23463502

Potential interactions among disease, pesticides, water quality and adjacent land cover in amphibian habitats in the United States

USGS Publications Warehouse

Battaglin, William A.; Smalling, Kelly L.; Anderson, Chauncey; Calhoun, Daniel L.; Chestnut, Tara E.; Muths, Erin L.

2016-01-01

To investigate interactions among disease, pesticides, water quality, and adjacent land cover, we collected samples of water, sediment, and frog tissue from 21 sites in 7 States in the United States (US) representing a variety of amphibian habitats. All samples were analyzed for > 90 pesticides and pesticide degradates, and water and frogs were screened for the amphibian chytrid fungus Batrachochytrium dendrobatidis (Bd) using molecular methods. Pesticides and pesticide degradates were detected frequently in frog breeding habitats (water and sediment) as well as in frog tissue. Fungicides occurred more frequently in water, sediment, and tissue than was expected based upon their limited use relative to herbicides or insecticides. Pesticide occurrence in water or sediment was not a strong predictor of occurrence in tissue, but pesticide concentrations in tissue were correlated positively to agricultural and urban land, and negatively to forested land in 2-km buffers around the sites. Bd was detected in water at 45% of sites, and on 34% of swabbed frogs. Bd detections in water were not associated with differences in land use around sites, but sites with detections had colder water. Frogs that tested positive for Bd were associated with sites that had higher total fungicide concentrations in water and sediment, but lower insecticide concentrations in sediments relative to frogs that were Bd negative. Bd concentrations on frog swabs were positively correlated to dissolved organic carbon, and total nitrogen and phosphorus, and negatively correlated to pH and water temperature.Data were collected from a range of locations and amphibian habitats and represent some of the first field-collected information aimed at understanding the interactions between pesticides, land use, and amphibian disease. These interactions are of particular interest to conservation efforts as many amphibians live in altered habitats and may depend on wetlands embedded in these landscapes to survive.

Mapping the global emergence of Batrachochytrium dendrobatidis, the amphibian chytrid fungus.

PubMed

Olson, Deanna H; Aanensen, David M; Ronnenberg, Kathryn L; Powell, Christopher I; Walker, Susan F; Bielby, Jon; Garner, Trenton W J; Weaver, George; Fisher, Matthew C

2013-01-01

The rapid worldwide emergence of the amphibian pathogen Batrachochytrium dendrobatidis (Bd) is having a profound negative impact on biodiversity. However, global research efforts are fragmented and an overarching synthesis of global infection data is lacking. Here, we provide results from a community tool for the compilation of worldwide Bd presence and report on the analyses of data collated over a four-year period. Using this online database, we analysed: 1) spatial and taxonomic patterns of infection, including amphibian families that appear over- and under-infected; 2) relationships between Bd occurrence and declining amphibian species, including associations among Bd occurrence, species richness, and enigmatic population declines; and 3) patterns of environmental correlates with Bd, including climate metrics for all species combined and three families (Hylidae, Bufonidae, Ranidae) separately, at both a global scale and regional (U.S.A.) scale. These associations provide new insights for downscaled hypothesis testing. The pathogen has been detected in 52 of 82 countries in which sampling was reported, and it has been detected in 516 of 1240 (42%) amphibian species. We show that detected Bd infections are related to amphibian biodiversity and locations experiencing rapid enigmatic declines, supporting the hypothesis that greater complexity of amphibian communities increases the likelihood of emergence of infection and transmission of Bd. Using a global model including all sampled species, the odds of Bd detection decreased with increasing temperature range at a site. Further consideration of temperature range, rather than maximum or minimum temperatures, may provide new insights into Bd-host ecology. Whereas caution is necessary when interpreting such a broad global dataset, the use of our pathogen database is helping to inform studies of the epidemiology of Bd, as well as enabling regional, national, and international prioritization of conservation efforts. We provide recommendations for adaptive management to enhance the database utility and relevance.

Modeling co-occurrence of northern spotted and barred owls: accounting for detection probability differences

USGS Publications Warehouse

Bailey, Larissa L.; Reid, Janice A.; Forsman, Eric D.; Nichols, James D.

2009-01-01

Barred owls (Strix varia) have recently expanded their range and now encompass the entire range of the northern spotted owl (Strix occidentalis caurina). This expansion has led to two important issues of concern for management of northern spotted owls: (1) possible competitive interactions between the two species that could contribute to population declines of northern spotted owls, and (2) possible changes in vocalization behavior and detection probabilities of northern spotted owls induced by presence of barred owls. We used a two-species occupancy model to investigate whether there was evidence of competitive exclusion between the two species at study locations in Oregon, USA. We simultaneously estimated detection probabilities for both species and determined if the presence of one species influenced the detection of the other species. Model selection results and associated parameter estimates provided no evidence that barred owls excluded spotted owls from territories. We found strong evidence that detection probabilities differed for the two species, with higher probabilities for northern spotted owls that are the object of current surveys. Non-detection of barred owls is very common in surveys for northern spotted owls, and detection of both owl species was negatively influenced by the presence of the congeneric species. Our results suggest that analyses directed at hypotheses of barred owl effects on demographic or occupancy vital rates of northern spotted owls need to deal adequately with imperfect and variable detection probabilities for both species.

Occurrence of neanderthal features in mandibles from the Atapuerca-SH site.

PubMed

Rosas, A

2001-01-01

Analysis of variation and distribution of evolutionary novelties is meaningful in understanding evolutionary processes. The mandible, as a morphological complex, comprises a large number of derived Neanderthal features. The present study investigates whether the features usually considered as European lineage apomorphies evolved independently; the occurrence of these features is studied in the mandibles from the Sima de los Huesos (SH) site (Atapuerca, Spain). For comparative purposes, a large sample of Neanderthal mandibles as well as older fossil Homo specimens have been used for the study. Chi-square tests were employed to test for independence. The SH mandibles present a set of features that clearly show the basic architecture of the Neanderthal mandible. A highly significant association is detected in the variation of the position of the mental foramen, the lateral prominence, and the anterior marginal tubercle, as well as in the development of retromolar space. However, a much weaker association is detected in the features of the internal aspect of the mandible, with a few exceptions. Features of the external aspect of the mandible occur chronologically earlier than those observed in the internal aspect. The hypothesis that two distinct and consecutive morphological processes have driven the emergence of the European lineage throughout the Middle Pleistocene is proposed. A first transformation affects the mandible by means of backwards displacement of the structures located at the external aspect, as well as the position of the condyle. A second process would modify the features of the internal aspect of the mandible, in which the relief of the masseteric and pterygoid fossae are affected, in association with a spatial rearrangement of the corpus and ramus. Analyzed individually, some of the considered features may be questioned as Neanderthal apomorphies (Trinkaus,1993; Franciscus and Trinkaus, 995); however, the joint occurrence of many of them suggests that the complex is an evolutionary novelty. Copyright 2001 Wiley-Liss, Inc.

Conservation of avian diversity in the Sierra Nevada: moving beyond a single-species management focus

USGS Publications Warehouse

White, Angela M.; Zipkin, Elise F.; Manley, Patricia N.; Schlesinger, Matthew D.

2013-01-01

Background: As a result of past practices, many of the dry coniferous forests of the western United States contain dense, even-aged stands with uncharacteristically high levels of litter and downed woody debris. These changes to the forest have received considerable attention as they elevate concerns regarding the outcome of wildland fire. However, attempts to reduce biomass through fuel reduction (i.e., thinning of trees) are often opposed by public interest groups whose objectives include maintaining habitat for species of concern such as the spotted owl, Strix occidentalis, the northern goshawk, Accipiter gentilis, and the Pacific fisher, Martes pennanti. Whether protection of these upper-trophic level species confers adequate conservation of avian forest diversity is unknown. Methodology and Principal Findings: We use a multi-species occurrence model to estimate the habitat associations of 47 avian species detected at 742 sampling locations within an 880-km2 area in the Sierra Nevada. Our approach, which accounts for variations in detectability of species, estimates occurrence probabilities of all species in a community by linking species occurrence models into one hierarchical community model, thus improving inferences on all species, especially those that are rare or observed infrequently. We address how the avian community is influenced by covariates related to canopy cover, tree size and shrub cover while accounting for the impacts of abiotic variables known to affect species distributions. Conclusions and Significance: Environmental parameters estimated through our approach emphasize the importance of within and between stand-level heterogeneity in meeting biodiversity objectives and suggests that many avian species would increase under more open canopy habitat conditions than those favored by umbrella species of high conservation concern. Our results suggest that a more integrated approach that emphasizes maintaining a diversity of habitats across environmental gradients and minimizing urbanization may have a greater benefit to ecosystem functioning then a single-species management focus.

Co-occurrence of acanthosis nigricans and bladder adenocarcinoma – case report

PubMed Central

Silny, Wojciech; Żaba, Ryszard; Osmola-Mańkowska, Agnieszka; Mackiewicz-Wysocka, Małgorzata; Dańczak-Pazdrowska, Aleksandra

2013-01-01

Acanthosis nigricans (AN) is characterized by the occurrence of symmetrical velvety hyperpigmented plaques that can be observed in each location on the skin. However, the lesions are most frequently located in the axillary, inguinal and nuchal areas. Primarily, the lesions appear as hyperpigmented focuses which later transform into papillary lesions. There are two forms of the disease – benign and malignant. Malignant AN is considered to represent paraneoplastic syndrome co-occurring with advanced cancer, but as such it is not malignant. This article presents a case of a patient diagnosed with AN and coexisting bladder cancer and discusses the case in the context of available literature. PMID:24596525

Probabilistic landslide susceptibility mapping in the Lai Chau province of Vietnam: focus on the relationship between tectonic fractures and landslides

NASA Astrophysics Data System (ADS)

Lee, Saro; Dan, Nguyen Tu

2005-09-01

This study evaluates the susceptibility of landslides in the Lai Chau province of Vietnam using Geographic Information System (GIS) and remote sensing data to focus on the relationship between tectonic fractures and landslides. Landslide locations were identified from aerial photographs and field surveys. Topographic, geological data and satellite images were collected, processed, and constructed into a spatial database using GIS data and image-processing techniques. A scheme of the tectonic fracturing of crust in the Lai Chau region was established. Lai Chau was identified as a region with many crustal fractures, where the grade of tectonic fracture is closely related to landslide occurrence. The influencing factors of landslide occurrence were: distance from a tectonic fracture, slope, aspect, curvature, soil, and vegetative land cover. Landslide prone areas were analyzed and mapped using the landslide occurrence factors employing the probability-frequency ratio model. The results of the analysis were verified using landslide location data and showed 83.47% prediction accuracy. That emphasized a strong relationship between the susceptibility map and the existing landslide location data. The results of this study can form a basis stable development and land use planning for the region.

Joint estimation of habitat dynamics and species interactions: Disturbance reduces co-occurrence of non-native predators with an endangered toad

USGS Publications Warehouse

Miller, David A.W.; Brehme, Cheryl S.; Hines, James E.; Nichols, James D.; Fisher, Robert N.

2012-01-01

1. Ecologists have long been interested in the processes that determine patterns of species occurrence and co-occurrence. Potential short-comings of many existing empirical approaches that address these questions include a reliance on patterns of occurrence at a single time point, failure to account properly for imperfect detection and treating the environment as a static variable.2. We fit detection and non-detection data collected from repeat visits using a dynamic site occupancy model that simultaneously accounts for the temporal dynamics of a focal prey species, its predators and its habitat. Our objective was to determine how disturbance and species interactions affect the co-occurrence probabilities of an endangered toad and recently introduced non-native predators in stream breeding habitats. For this, we determined statistical support for alternative processes that could affect co-occurrence frequency in the system.3. We collected occurrence data at stream segments in two watersheds where streams were largely ephemeral and one watershed dominated by perennial streams. Co-occurrence probabilities of toads with non-native predators were related to disturbance frequency, with low co-occurrence in the ephemeral watershed and high co-occurrence in the perennial watershed. This occurred because once predators were established at a site, they were rarely lost from the site except in cases when the site dried out. Once dry sites became suitable again, toads colonized them much more rapidly than predators, creating a period of predator-free space.4. We attribute the dynamics to a storage effect, where toads persisting outside the stream environment during periods of drought rapidly colonized sites when they become suitable again. Our results support that even in highly connected stream networks, temporal disturbance can structure frequencies with which breeding amphibians encounter non-native predators.5. Dynamic multi-state occupancy models are a powerful tool for rigorously examining hypotheses about inter-species and species–habitat interactions. In contrast to previous methods that infer dynamic processes based on static patterns in occupancy, the approach we took allows the dynamic processes that determine species–species and species–habitat interactions to be directly estimated.

Mount Aragats as a stable electron accelerator for atmospheric high-energy physics research

NASA Astrophysics Data System (ADS)

Chilingarian, Ashot; Hovsepyan, Gagik; Mnatsakanyan, Eduard

2016-03-01

Observation of the numerous thunderstorm ground enhancements (TGEs), i.e., enhanced fluxes of electrons, gamma rays, and neutrons detected by particle detectors located on the Earth's surface and related to the strong thunderstorms above it, helped to establish a new scientific topic—high-energy physics in the atmosphere. Relativistic runaway electron avalanches (RREAs) are believed to be a central engine initiating high-energy processes in thunderstorm atmospheres. RREAs observed on Mount Aragats in Armenia during the strongest thunderstorms and simultaneous measurements of TGE electron and gamma-ray energy spectra proved that RREAs are a robust and realistic mechanism for electron acceleration. TGE research facilitates investigations of the long-standing lightning initiation problem. For the last 5 years we were experimenting with the "beams" of "electron accelerators" operating in the thunderclouds above the Aragats research station. Thunderstorms are very frequent above Aragats, peaking in May-June, and almost all of them are accompanied with enhanced particle fluxes. The station is located on a plateau at an altitude 3200 asl near a large lake. Numerous particle detectors and field meters are located in three experimental halls as well as outdoors; the facilities are operated all year round. All relevant information is being gathered, including data on particle fluxes, fields, lightning occurrences, and meteorological conditions. By the example of the huge thunderstorm that took place at Mount Aragats on August 28, 2015, we show that simultaneous detection of all the relevant data allowed us to reveal the temporal pattern of the storm development and to investigate the atmospheric discharges and particle fluxes.

Occurrence and distribution of methyl tert-butyl ether and other volatile organic compounds in drinking water in the Northeast and Mid-Atlantic regions of the United States, 1993-98

USGS Publications Warehouse

Grady, S.J.; Casey, G.D.

2001-01-01

Data on volatile organic compounds (VOCs) in drinking water supplied by 2,110 randomly selected community water systems (CWSs) in 12 Northeast and Mid-Atlantic States indicate 64 VOC analytes were detected at least once during 1993-98. Selection of the 2,110 CWSs inventoried for this study targeted 20 percent of the 10,479 active CWSs in the region and represented a random subset of the total distribution by State, source of water, and size of system. The data include 21,635 analyses of drinking water collected for compliance monitoring under the Safe Drinking Water Act; the data mostly represent finished drinking water collected at the pointof- entry to, or at more distal locations within, each CWS?s distribution system following any watertreatment processes. VOC detections were more common in drinking water supplied by large systems (serving more than 3,300 people) that tap surface-water sources or both surface- and groundwater sources than in small systems supplied exclusively by ground-water sources. Trihalomethane (THM) compounds, which are potentially formed during the process of disinfecting drinking water with chlorine, were detected in 45 percent of the randomly selected CWSs. Chloroform was the most frequently detected THM, reported in 39 percent of the CWSs. The gasoline additive methyl tert-butyl ether (MTBE) was the most frequently detected VOC in drinking water after the THMs. MTBE was detected in 8.9 percent of the 1,194 randomly selected CWSs that analyzed samples for MTBE at any reporting level, and it was detected in 7.8 percent of the 1,074 CWSs that provided MTBE data at the 1.0-?g/L (microgram per liter) reporting level. As with other VOCs reported in drinking water, most MTBE concentrations were less than 5.0 ?g/L, and less than 1 percent of CWSs reported MTBE concentrations at or above the 20.0-?g/L lower limit recommended by the U.S. Environmental Protection Agency?s Drinking-Water Advisory. The frequency of MTBE detections in drinking water is significantly related to high- MTBE-use patterns. Detections are five times more likely in areas where MTBE is or has been used in gasoline at greater than 5 percent by volume as part of the oxygenated or reformulated (OXY/RFG) fuels program. Detection frequencies of the individual gasoline compounds (benzene, toluene, ethylbenzene, and xylenes (BTEX)) were mostly less than 3 percent of the randomly selected CWSs, but collectively, BTEX compounds were detected in 8.4 percent of CWSs. BTEX concentrations also were low and just three drinkingwater samples contained BTEX at concentrations exceeding 20 ?g/L. Co-occurrence of MTBE and BTEX was rare, and only 0.8 percent of CWSs reported simultaneous detections of MTBE and BTEX compounds. Low concentrations and cooccurrence of MTBE and BTEX indicate most gasoline contaminants in drinking water probably represent nonpoint sources. Solvents were frequently detected in drinking water in the 12-State area. One or more of 27 individual solvent VOCs were detected at any reporting level in 3,080 drinking-water samples from 304 randomly selected CWSs (14 percent) and in 206 CWSs (9.8 percent) at concentrations at or above 1.0 ?g/L. High co-occurrence among solvents probably reflects common sources and the presence of transformation by-products. Other VOCs were relatively rarely detected in drinking water in the 12-State area. Six percent (127) of the 2,110 randomly selected CWSs reported concentrations of 16 VOCs at or above drinking-water criteria. The 127 CWSs collectively serve 2.6 million people. The occurrence of VOCs in drinking water was significantly associated (p<0.0001) with high population- density urban areas. New Jersey, Massachusetts, and Rhode Island, States with substantial urbanization and high population density, had the highest frequency of VOC detections among the 12 States. More than two-thirds of the randomly selected CWSs in New Jersey reported detecting VOC concentrations in drinking water at or above 1

An analysis, sensitivity and prediction of winter fog events using FASP model over Indo-Gangetic plains, India

NASA Astrophysics Data System (ADS)

Srivastava, S. K., Sr.; Sharma, D. A.; Sachdeva, K.

2017-12-01

Indo-Gangetic plains of India experience severe fog conditions during the peak winter months of December and January every year. In this paper an attempt has been to analyze the spatial and temporal variability of winter fog over Indo-Gangetic plains. Further, an attempt has also been made to configure an efficient meso-scale numerical weather prediction model using different parameterization schemes and develop a forecasting tool for prediction of fog during winter months over Indo-Gangetic plains. The study revealed that an alarming increasing positive trend of fog frequency prevails over many locations of IGP. Hot spot and cluster analysis were conducted to identify the high fog prone zones using GIS and inferential statistical tools respectively. Hot spots on an average experiences fog on 68.27% days, it is followed by moderate and cold spots with 48.03% and 21.79% respectively. The study proposes a new FASP (Fog Analysis, sensitivity and prediction) Model for overall analysis and prediction of fog at a particular location and period over IGP. In the first phase of this model long term climatological fog data of a location is analyzed to determine its characteristics and prevailing trend using various advanced statistical techniques. During a second phase a sensitivity test is conducted with different combination of parameterization schemes to determine the most suitable combination for fog simulation over a particular location and period and in the third and final phase, first ARIMA model is used to predict the number of fog days in future . Thereafter, Numerical model is used to predict the various meteorological parameters favourable for fog forecast. Finally, Hybrid model is used for fog forecast over the study location. The results of the FASP model are validated with actual ground based fog data using statistical tools. Forecast Fog-gram generated using hybrid model during Jan 2017 shows highly encouraging results for fog occurrence/Non occurrence between 25 hrs to 72 hours forecast. The model predicted the fog occurrences/Non occurrence with more than 85 % accuracy over most of the locations across the study area. The minimum visibility departure is within 500 m on 90% occasions over the central IGP and within 1000m on more than 80 % occasions over most of the locations across Indo-Gangetic plains.

Detection biases yield misleading patterns of species persistence and colonization in fragmented landscapes

USGS Publications Warehouse

Ruiz-Gutierrez, Viviana; Zipkin, Elise F.

2011-01-01

Species occurrence patterns, and related processes of persistence, colonization and turnover, are increasingly being used to infer habitat suitability, predict species distributions, and measure biodiversity potential. The majority of these studies do not account for observational error in their analyses despite growing evidence suggesting that the sampling process can significantly influence species detection and subsequently, estimates of occurrence. We examined the potential biases of species occurrence patterns that can result from differences in detectability across species and habitat types using hierarchical multispecies occupancy models applied to a tropical bird community in an agricultural fragmented landscape. Our results suggest that detection varies widely among species and habitat types. Not incorporating detectability severely biased occupancy dynamics for many species by overestimating turnover rates, producing misleading patterns of persistence and colonization of agricultural habitats, and misclassifying species into ecological categories (i.e., forest specialists and generalists). This is of serious concern, given that most research on the ability of agricultural lands to maintain current levels of biodiversity by and large does not correct for differences in detectability. We strongly urge researchers to apply an inferential framework which explicitly account for differences in detectability to fully characterize species-habitat relationships, correctly guide biodiversity conservation in human-modified landscapes, and generate more accurate predictions of species responses to future changes in environmental conditions.

Searching for statistically significant regulatory modules.

PubMed

Bailey, Timothy L; Noble, William Stafford

2003-10-01

The regulatory machinery controlling gene expression is complex, frequently requiring multiple, simultaneous DNA-protein interactions. The rate at which a gene is transcribed may depend upon the presence or absence of a collection of transcription factors bound to the DNA near the gene. Locating transcription factor binding sites in genomic DNA is difficult because the individual sites are small and tend to occur frequently by chance. True binding sites may be identified by their tendency to occur in clusters, sometimes known as regulatory modules. We describe an algorithm for detecting occurrences of regulatory modules in genomic DNA. The algorithm, called mcast, takes as input a DNA database and a collection of binding site motifs that are known to operate in concert. mcast uses a motif-based hidden Markov model with several novel features. The model incorporates motif-specific p-values, thereby allowing scores from motifs of different widths and specificities to be compared directly. The p-value scoring also allows mcast to only accept motif occurrences with significance below a user-specified threshold, while still assigning better scores to motif occurrences with lower p-values. mcast can search long DNA sequences, modeling length distributions between motifs within a regulatory module, but ignoring length distributions between modules. The algorithm produces a list of predicted regulatory modules, ranked by E-value. We validate the algorithm using simulated data as well as real data sets from fruitfly and human. http://meme.sdsc.edu/MCAST/paper

Occurrence, distribution, and seasonality of emerging contaminants in urban watersheds.

PubMed

Bai, Xuelian; Lutz, Alex; Carroll, Rosemary; Keteles, Kristen; Dahlin, Kenneth; Murphy, Mark; Nguyen, David

2018-06-01

The widespread occurrence of natural and synthetic organic chemicals in surface waters can cause ecological risks and human health concerns. This study measured a suite of contaminants of emerging concern (CECs) in water samples collected by the U.S. Environmental Protection Agency Region 8 around the Denver, Colorado, metropolitan area. The results showed that 109 of 144 analyzed pharmaceutical compounds, 42 of 55 analyzed waste-indicator compounds (e.g., flame retardants, hormones, and personal care products), and 39 of 72 analyzed pesticides were detected in the water samples collected monthly between April and November in both 2014 and 2015. Pharmaceutical compounds were most abundant in the surface waters and their median concentrations were measured up to a few hundred nanograms per liter. The CEC concentrations varied depending on sampling locations and seasons. The primary source of CECs was speculated to be wastewater effluent. The CEC concentrations were correlated to streamflow volume and showed significant seasonal effects. The CECs were less persistent during spring runoff season compared with baseflow season at most sampling sites. These results are useful for providing baseline data for surface CEC monitoring and assessing the environmental risks and potential human exposure to CECs. Copyright © 2018 Elsevier Ltd. All rights reserved.

Detecting and characterizing genomic signatures of positive selection in global populations.

PubMed

Liu, Xuanyao; Ong, Rick Twee-Hee; Pillai, Esakimuthu Nisha; Elzein, Abier M; Small, Kerrin S; Clark, Taane G; Kwiatkowski, Dominic P; Teo, Yik-Ying

2013-06-06

Natural selection is a significant force that shapes the architecture of the human genome and introduces diversity across global populations. The question of whether advantageous mutations have arisen in the human genome as a result of single or multiple mutation events remains unanswered except for the fact that there exist a handful of genes such as those that confer lactase persistence, affect skin pigmentation, or cause sickle cell anemia. We have developed a long-range-haplotype method for identifying genomic signatures of positive selection to complement existing methods, such as the integrated haplotype score (iHS) or cross-population extended haplotype homozygosity (XP-EHH), for locating signals across the entire allele frequency spectrum. Our method also locates the founder haplotypes that carry the advantageous variants and infers their corresponding population frequencies. This presents an opportunity to systematically interrogate the whole human genome whether a selection signal shared across different populations is the consequence of a single mutation process followed subsequently by gene flow between populations or of convergent evolution due to the occurrence of multiple independent mutation events either at the same variant or within the same gene. The application of our method to data from 14 populations across the world revealed that positive-selection events tend to cluster in populations of the same ancestry. Comparing the founder haplotypes for events that are present across different populations revealed that convergent evolution is a rare occurrence and that the majority of shared signals stem from the same evolutionary event. Copyright © 2013 The American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.

Space weather, socioeconomic factors, water quality and suicide in northwestern Russia

NASA Astrophysics Data System (ADS)

Kasatkina, Elena; Shumilov, Oleg; Novikova, Tatiana; Sutinen, Marja-Liisa; Chramov, Alexey

2013-04-01

Temporal variations in suicide occurrence in the town of Kirovsk (Kola peninsula, Murmansk region) earlier have been associated with geomagnetic disturbances (Kasatkina et al., GRA, V. 13, EGU20111630). Data on a total of 908 suicides were analyzed for the period from 1948 to 2010. The largest number of suicides occurred in 1949 (70.3 persons per 100 thousand people) and the smallest one occurred in 1985 (15.2). We have identified three maxima in the seasonal distribution of the number of suicides (March-May (P<0.001), July (P<0.01), October (P<0.001)), which coincide with maxima in the distribution of the most intense (Ap>150 nT) magnetic storms. Here we carried out the comparison of suicide occurrence temporal variations for three different towns of Murmansk region (Kirovsk, Apatity and Monchegorsk) depending on their drinking water content. Among Arctic regions, Kola peninsula is the most densely populated and industrially developed. The largest apatite-nepheline enterprise in Europe and Russia - "Apatit" is located close to the towns Kirovsk (67.6N, 33.7E) and Apatity (67.6N, 33.4E). The largest Russian nickel-copper plant "Severonikel" is located in the town of Monchegorsk (67.9N, 32.9E). In spite of some similarities of the suicide temporal trends, one can detect some differences. These differences, as we supposed, are connected to different content in drinking water of such metals as copper (Cu) and aluminum (Al). These elements may influence the incidence of mental disorders such as schizophrenia, senile dementia and Wilson's disease.

Mines, prospects, and occurrences of metallic (excluding gold), pegmatite, and rare-earth mineral commodities in the Greenville 1 degree by 2 degrees Quadrangle, South Carolina, Georgia, and North Carolina

USGS Publications Warehouse

D'Agostino, John P.; Zupan, Alan Jon; Maybin, Arthur H.; Abrams, Charlotte E.; German, Jerry M.

1994-01-01

All of the known mines, prospects, and occurrences of metallic (excluding gold, pegmatite, and rare-earth mineral commodities for the Greenville 1° x 2° quadrangle are tabulated in this report. The table lists, in consecutive order for each county (fig. 1), the map number of each item, which correlates and locates the item on the accompanying Greenville 1° x 2° quadrangle map. The known name of the feature; the 7.5' topographic map on the which the commodity site is located; the Universal Transverse Mercator (UTM) northing and easting grid coordinates from the appropriate 7.5' topographic map; the commodity; remarks; and references are also listed. Some locations are known, but many sites are not verified and their locations are only approximate. References are listed in References Cited and referred to by number to save space.

Developing Predictive Models for Algal Bloom Occurrence and Identifying Factors Controlling their Occurrence in the Charlotte County and Surroundings

NASA Astrophysics Data System (ADS)

Karki, S.; Sultan, M.; Elkadiri, R.; Chouinard, K.

2017-12-01

Numerous occurrences of harmful algal blooms (Karenia Brevis) were reported from Southwest Florida along the coast of Charlotte County, Florida. We are developing data-driven (remote sensing, field, and meteorological data) models to accomplish the following: (1) identify the factors controlling bloom development, (2) forecast bloom occurrences, and (3) make recommendations for monitoring variables that are found to be most indicative of algal bloom occurrences and for identifying optimum locations for monitoring stations. To accomplish these three tasks we completed/are working on the following steps. Firstly, we developed an automatic system for downloading and processing of ocean color data acquired through MODIS Terra and MODIS Aqua products using SeaDAS ocean color processing software. Examples of extracted variables include: chlorophyll a (OC3M), chlorophyll a Generalized Inherent Optical Property (GIOP), chlorophyll a Garver-Siegel- Maritorena (GSM), sea surface temperature (SST), Secchi disk depth, euphotic depth, turbidity index, wind direction and speed, colored dissolved organic material (CDOM). Secondly we are developing a GIS database and a web-based GIS to host the generated remote sensing-based products in addition to relevant meteorological and field data. Examples of the meteorological and field inputs include: precipitation amount and rates, concentrations of nitrogen, phosphorous, fecal coliform and Dissolved Oxygen (DO). Thirdly, we are constructing and validating a multivariate regression model and an artificial neural network model to simulate past algal bloom occurrences using the compiled archival remote sensing, meteorological, and field data. The validated model will then be used to predict the timing and location of algal bloom occurrences. The developed system, upon completion, could enhance the decision making process, improve the citizen's quality of life, and strengthen the local economy.

Landscape-scale evaluation of asymmetric interactions between Brown Trout and Brook Trout using two-species occupancy models

USGS Publications Warehouse

Wagner, Tyler; Jefferson T. Deweber,; Jason Detar,; John A. Sweka,

2013-01-01

Predicting the distribution of native stream fishes is fundamental to the management and conservation of many species. Modeling species distributions often consists of quantifying relationships between species occurrence and abundance data at known locations with environmental data at those locations. However, it is well documented that native stream fish distributions can be altered as a result of asymmetric interactions between dominant exotic and subordinate native species. For example, the naturalized exotic Brown Trout Salmo trutta has been identified as a threat to native Brook Trout Salvelinus fontinalis in the eastern United States. To evaluate large-scale patterns of co-occurrence and to quantify the potential effects of Brown Trout presence on Brook Trout occupancy, we used data from 624 stream sites to fit two-species occupancy models. These models assumed that asymmetric interactions occurred between the two species. In addition, we examined natural and anthropogenic landscape characteristics we hypothesized would be important predictors of occurrence of both species. Estimated occupancy for Brook Trout, from a co-occurrence model with no landscape covariates, at sites with Brown Trout present was substantially lower than sites where Brown Trout were absent. We also observed opposing patterns for Brook and Brown Trout occurrence in relation to percentage forest, impervious surface, and agriculture within the network catchment. Our results are consistent with other studies and suggest that alterations to the landscape, and specifically the transition from a forested catchment to one that contains impervious surface or agriculture, reduces the occurrence probability of wild Brook Trout. Our results, however, also suggest that the presence of Brown Trout results in lower occurrence probability of Brook Trout over a range of anthropogenic landscape characteristics, compared with streams where Brown Trout were absent.

Subaqueous hot springs in Köyceğiz Lake, Dalyan Channel and Fethiye-Göcek Bay (SW Turkey): Locations, chemistry and origins

NASA Astrophysics Data System (ADS)

Avşar, Özgür; Avşar, Ulaş; Arslan, Şebnem; Kurtuluş, Bedri; Niedermann, Samuel; Güleç, Nilgün

2017-10-01

In this study, horizontal temperature measurements along organized grids have been used to detect subaqueous hot springs. The study area, located in the southwest of Turkey and comprised of Köyceğiz Lake, Dalyan Channel and Fethiye-Göcek Bay, was scanned by measuring temperatures horizontally, 2-3 m above the bottom of the lake or sea. After analyzing the temperature data along the grids, the locations with anomalous temperature values were detected, and divers headed here for further verification. Accordingly, among these anomalies, the divers confirmed seven of them as subaqueous hot springs. Three of these hot springs are located in the Köyceğiz Lake, three of them are located in the Dalyan Channel and one hot spring is located in the Fethiye-Göcek Bay. At the locations where temperature anomalies were detected, the divers collected samples directly from the subaqueous hot spring using a syringe-type sampler. We evaluated these water samples together with samples collected from hot and cold springs on land and from local rivers, lakes and the sea, with an aim to generate a conceptual hydrogeochemical model of the geothermal system in the study area. This model predicts that rainwater precipitating in the highlands percolates through fractures and faults into the deeper parts of the Earth's crust, here it is heated and ascends through the sea bottom via buried faults. Pervious carbonate nappes that are underlain and overlain by impervious rocks create a confined aquifer. The southern boundary of the Carbonate-Marmaris nappes is buried under alluvium and/or sea/lake water bodies and this phenomenon determines whether hot springs occur on land or subaqueous. The chemical and isotopic properties of the hot springs point to seawater mixing at deep levels. Thus, the mixing most probably occurs while the water is ascending through the faults and fractures. The gas geochemistry results reveal that the lowest mantle He contributions occur in the samples from Köycegiz Lake, whereas the highest ones are found in samples from the Dalaman plain. For the first time, we made use of the micro-XRF sediment core scanning (ITRAX Scanner) for exploring the relation between subaqueous geothermal occurrence and chemical properties of the surrounding sediments. The spatial elemental distribution of sea/lake bottom sediments suggests that depending on the surrounding rock units and the temperature of the hot spring, the sediments around the spring can be enriched with certain elements.

Detection and Occurrence of N-Nitrosamines in Archived Biosolids from the Targeted National Sewage Sludge Survey of the U.S. Environmental Protection Agency

PubMed Central

2015-01-01

The occurrence of eight carcinogenic N-nitrosamines in biosolids from 74 wastewater treatment plants (WWTPs) in the contiguous United States was investigated. Using liquid chromatography-tandem mass spectrometry, seven nitrosamines [(N-nitrosodimethylamine (NDMA), N-nitrosomethylethylamine, N-nitrosodi-n-propylamine (NDPA), N-nitrosodibutylamine, N-nitrosopyrrolidine, N-nitrosopiperidine (NPIP), and N-nitrosodiphenylamine (NDPhA)] were detected with varying detection frequency (DF) in 88% of the biosolids samples (n = 80), with five of the seven being reported here for the first time in biosolids. While rarely detected (DF 3%), NDMA was the most abundant compound at an average concentration of 504 ± 417 ng/g dry weight of biosolids. The most frequently detected nitrosamine was NDPhA (0.7—147 ng/g) with a DF of 79%, followed by NDPA (7–505 ng/g) and NPIP (51–1185 ng/g) at 21% and 11%, respectively. The DF of nitrosamines in biosolids was positively correlated with their respective n-octanol–water partition coefficients (R2 = 0.65). The DF and sum of mean concentrations of nitrosamines in biosolids increased with the treatment capacity of WWTPs. Given their frequent occurrence in nationally representative samples and the amount of U.S. biosolids being applied on land as soil amendment, this study warrants more research into the occurrence and fate of nitrosamines in biosolids-amended soils in the context of crop and drinking water safety. PMID:24697330

On the occurrence of magnetic reconnection equatorward of the cusps at the Earth's magnetopause during northward IMF conditions

NASA Astrophysics Data System (ADS)

Trattner, K. J.; Thresher, S.; Trenchi, L.; Fuselier, S. A.; Petrinec, S. M.; Peterson, W. K.; Marcucci, M. F.

2017-01-01

Magnetic reconnection changes the topology of magnetic field lines. This process is most readily observable with in situ instrumentation at the Earth's magnetopause as it creates open magnetic field lines to allow energy and momentum flux to flow from the solar wind to the magnetosphere. Most models use the direction of the interplanetary magnetic field (IMF) to determine the location of these magnetopause entry points, known as reconnection lines. Dayside locations of magnetic reconnection equatorward of the cusps are generally found during sustained intervals of southward IMF, while high-latitude region regions poleward of the cusps are observed for northward IMF conditions. In this study we discuss Double Star magnetopause crossings and a conjunction with a Polar cusp crossing during northward IMF conditions with a dominant IMF BY component. During all seven dayside magnetopause crossings, Double Star detected switching ion beams, a known signature for the presence of reconnection lines. In addition, Polar observed a cusp ion-energy dispersion profile typical for a dayside equatorial reconnection line. Using the cutoff velocities for the precipitating and mirrored ion beams in the cusp, the distance to the reconnection site is calculated, and this distance is traced back to the magnetopause, to the vicinity of the Double Star satellite locations. Our analysis shows that, for this case, the predicted line of maximum magnetic shear also coincides with that dayside reconnection location.

Occurrence analysis of daily rainfalls through non-homogeneous Poissonian processes

NASA Astrophysics Data System (ADS)

Sirangelo, B.; Ferrari, E.; de Luca, D. L.

2011-06-01

A stochastic model based on a non-homogeneous Poisson process, characterised by a time-dependent intensity of rainfall occurrence, is employed to explain seasonal effects of daily rainfalls exceeding prefixed threshold values. The data modelling has been performed with a partition of observed daily rainfall data into a calibration period for parameter estimation and a validation period for checking on occurrence process changes. The model has been applied to a set of rain gauges located in different geographical areas of Southern Italy. The results show a good fit for time-varying intensity of rainfall occurrence process by 2-harmonic Fourier law and no statistically significant evidence of changes in the validation period for different threshold values.

Content-based unconstrained color logo and trademark retrieval with color edge gradient co-occurrence histograms

NASA Astrophysics Data System (ADS)

Phan, Raymond; Androutsos, Dimitrios

2008-01-01

In this paper, we present a logo and trademark retrieval system for unconstrained color image databases that extends the Color Edge Co-occurrence Histogram (CECH) object detection scheme. We introduce more accurate information to the CECH, by virtue of incorporating color edge detection using vector order statistics. This produces a more accurate representation of edges in color images, in comparison to the simple color pixel difference classification of edges as seen in the CECH. Our proposed method is thus reliant on edge gradient information, and as such, we call this the Color Edge Gradient Co-occurrence Histogram (CEGCH). We use this as the main mechanism for our unconstrained color logo and trademark retrieval scheme. Results illustrate that the proposed retrieval system retrieves logos and trademarks with good accuracy, and outperforms the CECH object detection scheme with higher precision and recall.

Characteristics of cloud occurrence using ceilometer measurements and its relationship to precipitation over Seoul

NASA Astrophysics Data System (ADS)

Lee, Sanghee; Hwang, Seung-On; Kim, Jhoon; Ahn, Myoung-Hwan

2018-03-01

Clouds are an important component of the atmosphere that affects both climate and weather, however, their contributions can be very difficult to determine. Ceilometer measurements can provide high resolution information on atmospheric conditions such as cloud base height (CBH) and vertical frequency of cloud occurrence (CVF). This study presents the first comprehensive analysis of CBH and CVF derived using Vaisala CL51 ceilometers at two urban stations in Seoul, Korea, during a three-year period from January 2014 to December 2016. The average frequency of cloud occurrence detected by the ceilometers is 54.3%. It is found that the CL51 is better able to capture CBH as compared to another ceilometer CL31 at a nearby meteorological station because it could detect high clouds more accurately. Frequency distributions for CBH up to 13,000 m providing detailed vertical features with 500-m interval show 55% of CBHs below 2 km for aggregated CBHs. A bimodal frequency distribution was observed for three-layers CBHs. A monthly variation of CVF reveals that frequency concentration of lower clouds is found in summer and winter, and higher clouds more often detected in spring and autumn. Monthly distribution features of cloud occurrence and precipitation are depending on seasons and it might be easy to define their relationship due to higher degree of variability of precipitation than cloud occurrence. However, a fluctuation of cloud occurrence frequency in summer is similar to precipitation in trend, whereas clouds in winter are relatively frequent but precipitation is not accompanied. In addition, recent decrease of summer precipitation could be mostly explained by a decrease of cloud occurrence. Anomalous precipitation recorded sometimes is considerably related to corresponding cloud occurrence. The diurnal and daily variations of CBH and CVF from ceilometer observations and the analysis of microwave radiometer measurements for two typical cloudiness cases are also reviewed in parallel. This analysis in finer temporal scale exhibits that utilization of ground-based observations together could help to analyze the cloud behaviors.

Spatial patterns of modern period human-caused fire occurrence in the Missouri Ozark Highlands

Treesearch

Jian Yang; Hong S. Healy; Stephen R. Shifley; Eric J. Gustafson

2007-01-01

The spatial pattern of forest fire locations is important in the study of the dynamics of fire disturbance. In this article we used a spatial point process modeling approach to quantitatively study the effects of land cover, topography, roads, municipalities, ownership, and population density on fire occurrence reported between 1970 and 2002 in the Missouri Ozark...

Occurrence of an exotic earthworm (Amynthas agrestis) in undisturbed soils of the southern Appalachian Mountains, USA

Treesearch

Mac. A. Callaham; Paul F. Hendrix; Ross J. Phillips

2003-01-01

This study documents the occurrence of an aggressive invasive earthworm species in undisturbed forest soils of the southern Appalachian Mountains of northern Georgia, USA. Earthworms were sorted from samples collected in pitfall traps that had been set in mature, mesic oak-hickory forests in remote, high elevation, locations across northern Georgia. Specimens were...

Testing the seismology-based landquake monitoring system

NASA Astrophysics Data System (ADS)

Chao, Wei-An

2016-04-01

I have developed a real-time landquake monitoring system (RLMs), which monitor large-scale landquake activities in the Taiwan using real-time seismic network of Broadband Array in Taiwan for Seismology (BATS). The RLM system applies a grid-based general source inversion (GSI) technique to obtain the preliminary source location and force mechanism. A 2-D virtual source-grid on the Taiwan Island is created with an interval of 0.2° in both latitude and longitude. The depth of each grid point is fixed on the free surface topography. A database is stored on the hard disk for the synthetics, which are obtained using Green's functions computed by the propagator matrix approach for 1-D average velocity model, at all stations from each virtual source-grid due to nine elementary source components: six elementary moment tensors and three orthogonal (north, east and vertical) single-forces. Offline RLM system was carried out for events detected in previous studies. An important aspect of the RLM system is the implementation of GSI approach for different source types (e.g., full moment tensor, double couple faulting, and explosion source) by the grid search through the 2-D virtual source to automatically identify landquake event based on the improvement in waveform fitness and evaluate the best-fit solution in the monitoring area. With this approach, not only the force mechanisms but also the event occurrence time and location can be obtained simultaneously about 6-8 min after an occurrence of an event. To improve the insufficient accuracy of GSI-determined lotion, I further conduct a landquake epicenter determination (LED) method that maximizes the coherency of the high-frequency (1-3 Hz) horizontal envelope functions to determine the final source location. With good knowledge about the source location, I perform landquake force history (LFH) inversion to investigate the source dynamics (e.g., trajectory) for the relatively large-sized landquake event. With providing aforementioned source information in real-time, the government and emergency response agencies have sufficient reaction time for rapid assessment and response to landquake hazards. Since 2016, the RLM system has operated online.

Network Connectivity for Permanent, Transient, Independent, and Correlated Faults

NASA Technical Reports Server (NTRS)

White, Allan L.; Sicher, Courtney; henry, Courtney

2012-01-01

This paper develops a method for the quantitative analysis of network connectivity in the presence of both permanent and transient faults. Even though transient noise is considered a common occurrence in networks, a survey of the literature reveals an emphasis on permanent faults. Transient faults introduce a time element into the analysis of network reliability. With permanent faults it is sufficient to consider the faults that have accumulated by the end of the operating period. With transient faults the arrival and recovery time must be included. The number and location of faults in the system is a dynamic variable. Transient faults also introduce system recovery into the analysis. The goal is the quantitative assessment of network connectivity in the presence of both permanent and transient faults. The approach is to construct a global model that includes all classes of faults: permanent, transient, independent, and correlated. A theorem is derived about this model that give distributions for (1) the number of fault occurrences, (2) the type of fault occurrence, (3) the time of the fault occurrences, and (4) the location of the fault occurrence. These results are applied to compare and contrast the connectivity of different network architectures in the presence of permanent, transient, independent, and correlated faults. The examples below use a Monte Carlo simulation, but the theorem mentioned above could be used to guide fault-injections in a laboratory.

Geomagnetic and solar activity dependence of ionospheric upflowing O+: FAST observations

NASA Astrophysics Data System (ADS)

Zhao, K.; Jiang, Y.; Chen, K. W.; Huang, L. F.

2016-09-01

This paper investigates the dependence of the occurrence frequency of ionospheric upflowing oxygen (O+) ions on the sunspot cycle and geomagnetic activity. We examine the upflows response to the geomagnetic disturbances as well as the influence of the ion energy factor in controlling the magnitude of the occurrence frequency and the net energy flux. We discuss the spatial distribution of the upflow occurrence frequency and construct a regression model as a function of the magnetic latitude. The results show an overall enhancement of the upflow occurrence frequency during magnetically disturbed periods and indicate that the high-occurrence area spreads out from the source regions during magnetically quiet periods. The high-occurrence areas are located at 70° magnetic latitude (mLat) in the dayside auroral oval zone and between 76-80° mLat in the dayside polar cusp region. In the nightside auroral oval zone, these areas are near 60° mLat, penetrating further equatorward to 55° mLat during magnetically disturbed periods. High energy (≥1 keV) upflowing ions are common in the nightside auroral oval zone while low energy (<1 keV) upflowing ions are found escaping from the high latitude dayside cusp region. A Gaussian function is shown to be a good fit to the occurrence frequency over the magnetic latitude. For high energy upflowing O+ ions, the occurrence frequency exhibits a single peak located at about 60° mLat in the nightside auroral oval zone while for low energy upflowing O+ ions, it exhibits two peaks, one near 60° mLat in the auroral oval zone and the other near 78° mLat in the cusp region. We study the solar activity dependence by analyzing the relationship between the upflow occurrence frequency and the sunspot number (RZ). The statistical result shows that the frequency decreases with declining solar activity level, from ˜30 % at solar maximum to ˜5 % at solar minimum. In addition, the correlation coefficient between the occurrence frequency and RZ is 0.9.

Predicting locations of rare aquatic species’ habitat with a combination of species-specific and assemblage-based models

USGS Publications Warehouse

McKenna, James E.; Carlson, Douglas M.; Payne-Wynne, Molly L.

2013-01-01

Aim: Rare aquatic species are a substantial component of biodiversity, and their conservation is a major objective of many management plans. However, they are difficult to assess, and their optimal habitats are often poorly known. Methods to effectively predict the likely locations of suitable rare aquatic species habitats are needed. We combine two modelling approaches to predict occurrence and general abundance of several rare fish species. Location: Allegheny watershed of western New York State (USA) Methods: Our method used two empirical neural network modelling approaches (species specific and assemblage based) to predict stream-by-stream occurrence and general abundance of rare darters, based on broad-scale habitat conditions. Species-specific models were developed for longhead darter (Percina macrocephala), spotted darter (Etheostoma maculatum) and variegate darter (Etheostoma variatum) in the Allegheny drainage. An additional model predicted the type of rare darter-containing assemblage expected in each stream reach. Predictions from both models were then combined inclusively and exclusively and compared with additional independent data. Results Example rare darter predictions demonstrate the method's effectiveness. Models performed well (R2 ≥ 0.79), identified where suitable darter habitat was most likely to occur, and predictions matched well to those of collection sites. Additional independent data showed that the most conservative (exclusive) model slightly underestimated the distributions of these rare darters or predictions were displaced by one stream reach, suggesting that new darter habitat types were detected in the later collections. Main conclusions Broad-scale habitat variables can be used to effectively identify rare species' habitats. Combining species-specific and assemblage-based models enhances our ability to make use of the sparse data on rare species and to identify habitat units most likely and least likely to support those species. This hybrid approach may assist managers with the prioritization of habitats to be examined or conserved for rare species.

Analysis of Regionally Detected Icequakes Using the STEEP Network, South-Central AK

NASA Astrophysics Data System (ADS)

O'Neel, S.; Leblanc, L.; Larsen, C.; Truffer, M.; Hansen, R.; Rupert, N.; Pavlis, G.; None, N.

2007-12-01

Glaciers produce seismic energy that is detectable from local to teleseismic distances. Glaciolgical processes including calving, surface crevassing, basal sliding and other, yet unresolved source processes are capable of producing recordable seismicity. Twenty-two broadband sensors deployed in south-central Alaska during the SainT Elias TEctonics and Erosion Project (STEEP) provide an excellent means to study glacier-generated seismicity at regional distances. These instruments surround over 7500 km2 of glacier area including the Bering Glacier, Bagley Icefield and the tidewater calving glaciers of Icy Bay (Yahtse, Guyot, Tyndal). Our analysis shows that icequakes nominally occur several times hourly, and can be separated from tectonic seismicity using their unique spectral characteristics and hypocenter locations. The events typically propagate over 50-75 km distances, but occasionally are recorded at stations over 150 km away from the energy source. Hypocenters for more than 1000 events were manually calculated through a 26-day interval during October 2006, and suggest that a majority of the icequakes are associated with calving at tidewater glaciers that terminate in Icy Bay. Events with similar time and frequency domain characteristics also occur at locations away from calving fronts, but less often, and their mechanical origin remains undetermined. Automated detections from a frequency domain event detector exhibit strong correlation with the handpicked time series, and extend our analysis to all available data collected during 2006. We present the time distribution of several categories of icequakes and compare these distributions to environmental variables such as precipitation, temperature and tides to explore potential forcing for observed variability in icequake occurrence.

Transit visibility zones of the Solar system planets

NASA Astrophysics Data System (ADS)

Wells, R.; Poppenhaeger, K.; Watson, C. A.; Heller, R.

2018-01-01

The detection of thousands of extrasolar planets by the transit method naturally raises the question of whether potential extrasolar observers could detect the transits of the Solar system planets. We present a comprehensive analysis of the regions in the sky from where transit events of the Solar system planets can be detected. We specify how many different Solar system planets can be observed from any given point in the sky, and find the maximum number to be three. We report the probabilities of a randomly positioned external observer to be able to observe single and multiple Solar system planet transits; specifically, we find a probability of 2.518 per cent to be able to observe at least one transiting planet, 0.229 per cent for at least two transiting planets, and 0.027 per cent for three transiting planets. We identify 68 known exoplanets that have a favourable geometric perspective to allow transit detections in the Solar system and we show how the ongoing K2 mission will extend this list. We use occurrence rates of exoplanets to estimate that there are 3.2 ± 1.2 and 6.6^{+1.3}_{-0.8} temperate Earth-sized planets orbiting GK and M dwarf stars brighter than V = 13 and 16, respectively, that are located in the Earth's transit zone.

Observation of Signatures of Meteoroidal Water in the Lunar Exosphere by the LADEE NMS Instrument

NASA Astrophysics Data System (ADS)

Benna, M.; Elphic, R. C.; Hurley, D.; Stubbs, T. J.; Mahaffy, P. R.

2017-12-01

During its seven months in orbit, the Neutral Mass Spectrometer (NMS) of the Lunar Atmosphere and Dust Environment Explorer (LADEE) Mission measured the composition and variability of the tenuous lunar atmosphere. These measurements led to the detection of signatures of water group neutrals (H2O and/or OH) in the exosphere of the Moon. The signature of water has been measured as sporadic, short-lived signal increases above instrument background levels. The NMS data show that the occurrence rate of the high signal water "spikes" is correlated with periods of major annual meteoroid streams. Moreover, the daily water detection rate is in agreement with the expected evolution of the incoming meteoroidal impact flux at the Moon. Monte Carlo modeling of the evolution of vaporized water indicates that the signatures detected by the NMS instrument are commensurate in size and distribution of the energetic fraction of the vapors released by impacts that occurred near the location of the spacecraft. These measurements provide the first direct constraints on the contribution of meteoroid-delivered water to the sequestered ice in the permanently shadow regions of the lunar poles. They also provide a new technique for real-time observations of meteoroid impacts on airless bodies of the solar system through the detection of their associated volatile signatures.

Evaluation of the accuracy of linear measurements on multi-slice and cone beam computed tomography scans to detect the mandibular canal during bilateral sagittal split osteotomy of the mandible.

PubMed

Freire-Maia, B; Machado, V deC; Valerio, C S; Custódio, A L N; Manzi, F R; Junqueira, J L C

2017-03-01

The aim of this study was to compare the accuracy of linear measurements of the distance between the mandibular cortical bone and the mandibular canal using 64-detector multi-slice computed tomography (MSCT) and cone beam computed tomography (CBCT). It was sought to evaluate the reliability of these examinations in detecting the mandibular canal for use in bilateral sagittal split osteotomy (BSSO) planning. Eight dry human mandibles were studied. Three sites, corresponding to the lingula, the angle, and the body of the mandible, were selected. After the CT scans had been obtained, the mandibles were sectioned and the bone segments measured to obtain the actual measurements. On analysis, no statistically significant difference was found between the measurements obtained through MSCT and CBCT, or when comparing the measurements from these scans with the actual measurements. It is concluded that the images obtained by CT scan, both 64-detector multi-slice and cone beam, can be used to obtain accurate linear measurements to locate the mandibular canal for preoperative planning of BSSO. The ability to correctly locate the mandibular canal during BSSO will reduce the occurrence of neurosensory disturbances in the postoperative period. Copyright © 2016 International Association of Oral and Maxillofacial Surgeons. Published by Elsevier Ltd. All rights reserved.

Rockfall monitoring by Terrestrial Laser Scanning - case study of the basaltic rock face at Castellfollit de la Roca (Catalonia, Spain)

NASA Astrophysics Data System (ADS)

Abellán, A.; Vilaplana, J. M.; Calvet, J.; García-Sellés, D.; Asensio, E.

2011-03-01

This case study deals with a rock face monitoring in urban areas using a Terrestrial Laser Scanner. The pilot study area is an almost vertical, fifty meter high cliff, on top of which the village of Castellfollit de la Roca is located. Rockfall activity is currently causing a retreat of the rock face, which may endanger the houses located at its edge. TLS datasets consist of high density 3-D point clouds acquired from five stations, nine times in a time span of 22 months (from March 2006 to January 2008). The change detection, i.e. rockfalls, was performed through a sequential comparison of datasets. Two types of mass movement were detected in the monitoring period: (a) detachment of single basaltic columns, with magnitudes below 1.5 m3 and (b) detachment of groups of columns, with magnitudes of 1.5 to 150 m3. Furthermore, the historical record revealed (c) the occurrence of slab failures with magnitudes higher than 150 m3. Displacements of a likely slab failure were measured, suggesting an apparent stationary stage. Even failures are clearly episodic, our results, together with the study of the historical record, enabled us to estimate a mean detachment of material from 46 to 91.5 m3 year-1. The application of TLS considerably improved our understanding of rockfall phenomena in the study area.

Occurrence and distribution of bacteria indicators, chemical tracers and pathogenic vibrios in Singapore coastal waters.

PubMed

Goh, Shin Giek; Bayen, Stéphane; Burger, David; Kelly, Barry C; Han, Ping; Babovic, Vladan; Gin, Karina Yew-Hoong

2017-01-15

Water quality in Singapore's coastal area was evaluated with microbial indicators, pathogenic vibrios, chemical tracers and physico-chemical parameters. Sampling sites were grouped into two clusters (coastal sites at (i) northern and (ii) southern part of Singapore). The coastal sites located at northern part of Singapore along the Johor Straits exhibited greater pollution. Principal component analysis revealed that sampling sites at Johor Straits have greater loading on carbamazepine, while turbidity poses greater influence on sampling sites at Singapore Straits. Detection of pathogenic vibrios was also more prominent at Johor Straits than the Singapore Straits. This study examined the spatial variations in Singapore's coastal water quality and provided the baseline information for health risk assessment and future pollution management. Copyright © 2016 Elsevier Ltd. All rights reserved.

Interpreting Reservoir Microseismicity Detected During CO2 Injection at the Aneth Oil Field

NASA Astrophysics Data System (ADS)

Rutledge, J. T.

2009-12-01

Microseismic monitoring is expected to be a useful tool in CO2 sequestration projects for mapping pressure fronts and detecting fault activation and potential leakage paths. Downhole microseismic monitoring and several other techniques are being tested for their efficacy in tracking movement and containment of CO2 injected at the Aneth oil field located in San Juan County, Utah. The Southwest Regional Partnership on CO2 Sequestration is conducting the monitoring activities in collaboration with Resolute Natural Resources Company, under the support of the U.S. Department of Energy’s National Energy Technology Laboratory. The CO2 injection at Aneth is associated with a field-wide enhanced oil recovery operation following decades of pressure maintenance and oil recovery by water-flood injection. A 60-level geophone string was cemented into a monitoring well equipped with both 3-component and vertical component geophones spanning from 800 to 1700 m depth. The top of the oil reservoir in the study area is at approximately 1730 m depth. Over the first year of monitoring, approximately 3800 microearthquakes have been detected within about 3 km of the geophone string. The Aneth reservoir events are relatively large with magnitudes ranging from approximately -1 to 1. For comparison, reservoir seismicity induced during hydraulic fracturing treatments typically result in events with magnitudes <-1, unless pre-existing faults are pressurized by the treatments. The Aneth events delineate two NW-SE oriented fracture zones located on opposite flanks of the reservoir. Injection activity is fairly uniform over the entire field area, and the microseismicity does not correlate either temporally or spatially with any anomalous changes in injection or production activities near the source locations. Because the activity is fairly isolated and relatively energetic, I speculate that the seismicity may be due to critically stressed structures driven by longer-term production- and/or injection-induced stress changes. Ongoing analysis includes extracting precise arrival time to improve relative source locations and looking for correlations of event occurrence and moment release with field-wide rates of injection and production.

Associations among pathogenic bacteria, parasites, and environmental and land use factors in multiple mixed-use watersheds.

PubMed

Wilkes, G; Edge, T A; Gannon, V P J; Jokinen, C; Lyautey, E; Neumann, N F; Ruecker, N; Scott, A; Sunohara, M; Topp, E; Lapen, D R

2011-11-15

Over a five year period (2004-08), 1171 surface water samples were collected from up to 24 sampling locations representing a wide range of stream orders, in a river basin in eastern Ontario, Canada. Water was analyzed for Cryptosporidium oocysts and Giardia cyst densities, the presence of Salmonella enterica subspecies enterica, Campylobacter spp., Listeria monocytogenes, and Escherichia coli O157:H7. The study objective was to explore associations among pathogen densities/occurrence and objectively defined land use, weather, hydrologic, and water quality variables using CART (Classification and Regression Tree) and binary logistical regression techniques. E. coli O157:H7 detections were infrequent, but detections were related to upstream livestock pasture density; 20% of the detections were located where cattle have access to the watercourses. The ratio of detections:non-detections for Campylobacter spp. was relatively higher (>1) when mean air temperatures were 6% below mean study period temperature values (relatively cooler periods). Cooler water temperatures, which can promote bacteria survival and represent times when land applications of manure typically occur (spring and fall), may have promoted increased frequency of Campylobacter spp. Fifty-nine percent of all Salmonella spp. detections occurred when river discharge on a branch of the river system of Shreve stream order = 9550 was >83 percentile. Hydrological events that promote off farm/off field/in stream transport must manifest themselves in order for detection of Salmonella spp. to occur in surface water in this region. Fifty seven percent of L. monocytogenes detections occurred in spring, relative to other seasons. It was speculated that a combination of winter livestock housing, silage feeding during winter, and spring application of manure that accrued during winter, contributed to elevated occurrences of this pathogen in spring. Cryptosporidium and Giardia oocyst and cyst densities were, overall, positively associated with surface water discharge, and negatively associated with air/water temperature during spring-summer-fall. Yet, some of the highest Cryptosporidium oocyst densities were associated with low discharge conditions on smaller order streams, suggesting wildlife as a contributing fecal source. Fifty six percent of all detections of ≥ 2 bacteria pathogens (including Campylobacter spp., Salmonella spp., and E. coli O157:H7) in water was associated with lower water temperatures (<∼ 14 °C; primarily spring and fall) and when total rainfall the week prior to sampling was >∼ 27 mm (62 percentile). During higher water temperatures (>∼ 14 °C), a higher amount of weekly rainfall was necessary to promote detection of ≥ 2 pathogens (primarily summer; weekly rainfall ∼>42 mm (>77 percentile); 15% of all ≥ 2 detections). Less rainfall may have been necessary to mobilize pathogens from adjacent land, and/or in stream sediments, during cooler water conditions; as these are times when manures are applied to fields in the area, and soil water contents and water table depths are relatively higher. Season, stream order, turbidity, mean daily temperature, surface water discharge, cropland coverage, and nearest upstream distance to a barn and pasture were variables that were relatively strong and recurrent with regard to discriminating pathogen presence and absence, and parasite densities in surface water in the region. Crown Copyright © 2011. Published by Elsevier Ltd. All rights reserved.

A Bayesian state-space approach for damage detection and classification

NASA Astrophysics Data System (ADS)

Dzunic, Zoran; Chen, Justin G.; Mobahi, Hossein; Büyüköztürk, Oral; Fisher, John W.

2017-11-01

The problem of automatic damage detection in civil structures is complex and requires a system that can interpret collected sensor data into meaningful information. We apply our recently developed switching Bayesian model for dependency analysis to the problems of damage detection and classification. The model relies on a state-space approach that accounts for noisy measurement processes and missing data, which also infers the statistical temporal dependency between measurement locations signifying the potential flow of information within the structure. A Gibbs sampling algorithm is used to simultaneously infer the latent states, parameters of the state dynamics, the dependence graph, and any changes in behavior. By employing a fully Bayesian approach, we are able to characterize uncertainty in these variables via their posterior distribution and provide probabilistic estimates of the occurrence of damage or a specific damage scenario. We also implement a single class classification method which is more realistic for most real world situations where training data for a damaged structure is not available. We demonstrate the methodology with experimental test data from a laboratory model structure and accelerometer data from a real world structure during different environmental and excitation conditions.

Analysis of surface deformation during the eruptive process of El Hierro Island (Canary Islands, Spain): Detection, Evolution and Forecasting.

NASA Astrophysics Data System (ADS)

Berrocoso, M.; Fernandez-Ros, A.; Prates, G.; Martin, M.; Hurtado, R.; Pereda, J.; Garcia, M. J.; Garcia-Cañada, L.; Ortiz, R.; Garcia, A.

2012-04-01

The surface deformation has been an essential parameter for the onset and evolution of the eruptive process of the island of El Hierro (October 2011) as well as for forecasting changes in seismic and volcanic activity during the crisis period. From GNSS-GPS observations the reactivation is early detected by analizing the change in the deformation of the El Hierro Island regional geodynamics. It is found that the surface deformation changes are detected before the occurrence of seismic activity using the station FRON (GRAFCAN). The evolution of the process has been studied by the analysis of time series of topocentric coordinates and the variation of the distance between stations on the island of El Hierro (GRAFCAN station;IGN network; and UCA-CSIC points) and LPAL-IGS station on the island of La Palma. In this work the main methodologies and their results are shown: •The location (and its changes) of the litospheric pressure source obtained by applying the Mogi model. •Kalman filtering technique for high frequency time series, used to make the forecasts issued for volcanic emergency management. •Correlations between deformation of the different GPS stations and their relationship with seismovolcanic settings.

Reconnaissance survey of sulfonamide, sulfonylurea, and imidazolinone herbicides in surface streams and groundwater of the Midwestern United States

USGS Publications Warehouse

Steinheimer, T.R.; Pfeiffer, R.L.; Scoggin, K.D.; Battaglin, W.A.

2000-01-01

The study objective was to conduct a small scale synoptic survey of representative water resources draining agricultural land for occurrence of several herbicide residues. These new classes of herbicides are commonly applied pre-emergence or post-emergence in conservation tillage systems to control grasses and broadleaf weeds in cropped and noncropped areas. Both surface water and groundwater samples were collected from 44 midwestern locations during the summer of 1997, and analyzed for herbicide residues of 15 sulfonylurea and imidazolinone chemicals, and one sulfonamide. Each site was sampled between mid-June and late-October with several stream sites sampled twice. The method, developed jointly by the chemical manufacturer's and the U.S. Environmental Protection Agency, provides a 100 ng/L limit of quantitation in surface water for all analytes. Analytes were detected and identity confirmed in surface water at six sites and in ground water at two sites. The most frequently detected herbicides were imazaquin, imazethapyr, and nicosulfuron. For field studies in which the source of surface and ground water associated with the farming system on the agricultural landscape is known, the sensitivity of the method can be improved with only minor modifications in detection criteria.

Ion-neutral Coupling During Deep Solar Minimum

NASA Technical Reports Server (NTRS)

Huang, Cheryl Y.; Roddy, Patrick A.; Sutton, Eric K.; Stoneback, Russell; Pfaff, Robert F.; Gentile, Louise C.; Delay, Susan H.

2013-01-01

The equatorial ionosphere under conditions of deep solar minimum exhibits structuring due to tidal forces. Data from instruments carried by the Communication Navigation Outage Forecasting System (CNOFS) which was launched in April 2008 have been analyzed for the first 2 years following launch. The Planar Langmuir Probe (PLP), Ion Velocity Meter (IVM) and Vector Electric Field Investigation (VEFI) all detect periodic structures during the 20082010 period which appear to be tides. However when the tidal features detected by these instruments are compared, there are distinctive and significant differences between the observations. Tides in neutral densities measured by the Gravity Recovery and Climate Experiment (GRACE) satellite were also observed during June 2008. In addition, Broad Plasma Decreases (BPDs) appear as a deep absolute minimum in the plasma and neutral density tidal pattern. These are co-located with regions of large downward-directed ion meridional velocities and minima in the zonal drifts, all on the nightside. The region in which BPDs occur coincides with a peak in occurrence rate of dawn depletions in plasma density observed on the Defense Meterological Satellite Program (DMSP) spacecraft, as well as a minimum in radiance detected by UV imagers on the Thermosphere Ionosphere Mesosphere Energetics and Dynamics (TIMED) and IMAGE satellites

The Occurrence of Some Nonblood Protozoan Parasites in Wild and Domestic Mammals in South Africa.

PubMed

Lukášová, Radka; Halajian, Ali; Bártová, Eva; Kobédová, Kateřina; Swanepoel, Lourens H; O'Riain, M Justin

2018-04-01

Relatively little is known about protozoan parasites in African animals. Here we investigated the occurrence of protozoan parasites in mammals from South Africa. Oocysts of protozoan parasites were detected in 13 of 56 (23%) fecal samples using conventional microscopic examination methods. Cryptosporidium spp. and Cystoisospora spp. were detected in eight (14%) and five (9%) samples, respectively. Mixed parasitic infection of Cryptosporidium spp. and Cystoisospora spp. was recorded in banded mongoose ( Mungos mungo). Cryptosporidium spp. was detected for the first time in cheetah ( Acinonyx jubatus), spotted hyena ( Crocuta crocuta), and African polecat ( Ictonyx striatus). Antibodies to Toxoplasma gondii and Neospora caninum were not detected by enzyme-linked immunosorbent assay in any of 32 sera tested. We detected T. gondii by PCR in tissues of five of 243 (2%) animals: domestic dog ( Canis lupus familiaris), gerbil ( Gerbilliscus spp.), greater kudu ( Tragelaphus strepsiceros), honey badger ( Mellivora capensis), and white-tailed mongoose ( Ichneumia albicauda). Our isolation of T. gondii from white-tailed mongoose and honey badger was a unique finding. All tissue samples were negative for N. caninum. The study increases our knowledge on the occurrence of protozoan parasites in populations of wild and domestic animals in South Africa.

Development of a database and processing method for detecting hematotoxicity adverse drug events.

PubMed

Shimai, Yoshie; Takeda, Toshihiro; Manabe, Shirou; Teramoto, Kei; Mihara, Naoki; Matsumura, Yasushi

2015-01-01

Adverse events are detected by monitoring the patient's status, including blood test results. However, it is difficult to identify all adverse events based on recognition by individual doctors. We developed a system that can be used to detect hematotoxicity adverse events according to blood test results recorded in an electronic medical record system. The blood test results were graded based on Common Terminology Criteria for Adverse Events (CTCAE) and changes in the blood test results (Up, Down, Flat) were assessed according to the variation in the grade. The changes in the blood test and injection data were stored in a database. By comparing the date of injection and start and end dates of the change in the blood test results, adverse events related to a designated drug were detected. Using this method, we searched for the occurrence of serious adverse events (CTCAE Grades 3 or 4) concerning WBC, ALT and creatinine related to paclitaxel at Osaka University Hospital. The rate of occurrence of a decreased WBC count, increased ALT level and increased creatinine level was 36.0%, 0.6% and 0.4%, respectively. This method is useful for detecting and estimating the rate of occurrence of hematotoxicity adverse drug events.

A novel approach for automatic visualization and activation detection of evoked potentials induced by epidural spinal cord stimulation in individuals with spinal cord injury.

PubMed

Mesbah, Samineh; Angeli, Claudia A; Keynton, Robert S; El-Baz, Ayman; Harkema, Susan J

2017-01-01

Voluntary movements and the standing of spinal cord injured patients have been facilitated using lumbosacral spinal cord epidural stimulation (scES). Identifying the appropriate stimulation parameters (intensity, frequency and anode/cathode assignment) is an arduous task and requires extensive mapping of the spinal cord using evoked potentials. Effective visualization and detection of muscle evoked potentials induced by scES from the recorded electromyography (EMG) signals is critical to identify the optimal configurations and the effects of specific scES parameters on muscle activation. The purpose of this work was to develop a novel approach to automatically detect the occurrence of evoked potentials, quantify the attributes of the signal and visualize the effects across a high number of scES parameters. This new method is designed to automate the current process for performing this task, which has been accomplished manually by data analysts through observation of raw EMG signals, a process that is laborious and time-consuming as well as prone to human errors. The proposed method provides a fast and accurate five-step algorithms framework for activation detection and visualization of the results including: conversion of the EMG signal into its 2-D representation by overlaying the located signal building blocks; de-noising the 2-D image by applying the Generalized Gaussian Markov Random Field technique; detection of the occurrence of evoked potentials using a statistically optimal decision method through the comparison of the probability density functions of each segment to the background noise utilizing log-likelihood ratio; feature extraction of detected motor units such as peak-to-peak amplitude, latency, integrated EMG and Min-max time intervals; and finally visualization of the outputs as Colormap images. In comparing the automatic method vs. manual detection on 700 EMG signals from five individuals, the new approach decreased the processing time from several hours to less than 15 seconds for each set of data, and demonstrated an average accuracy of 98.28% based on the combined false positive and false negative error rates. The sensitivity of this method to the signal-to-noise ratio (SNR) was tested using simulated EMG signals and compared to two existing methods, where the novel technique showed much lower sensitivity to the SNR.

A novel approach for automatic visualization and activation detection of evoked potentials induced by epidural spinal cord stimulation in individuals with spinal cord injury

PubMed Central

Mesbah, Samineh; Angeli, Claudia A.; Keynton, Robert S.; Harkema, Susan J.

2017-01-01

Voluntary movements and the standing of spinal cord injured patients have been facilitated using lumbosacral spinal cord epidural stimulation (scES). Identifying the appropriate stimulation parameters (intensity, frequency and anode/cathode assignment) is an arduous task and requires extensive mapping of the spinal cord using evoked potentials. Effective visualization and detection of muscle evoked potentials induced by scES from the recorded electromyography (EMG) signals is critical to identify the optimal configurations and the effects of specific scES parameters on muscle activation. The purpose of this work was to develop a novel approach to automatically detect the occurrence of evoked potentials, quantify the attributes of the signal and visualize the effects across a high number of scES parameters. This new method is designed to automate the current process for performing this task, which has been accomplished manually by data analysts through observation of raw EMG signals, a process that is laborious and time-consuming as well as prone to human errors. The proposed method provides a fast and accurate five-step algorithms framework for activation detection and visualization of the results including: conversion of the EMG signal into its 2-D representation by overlaying the located signal building blocks; de-noising the 2-D image by applying the Generalized Gaussian Markov Random Field technique; detection of the occurrence of evoked potentials using a statistically optimal decision method through the comparison of the probability density functions of each segment to the background noise utilizing log-likelihood ratio; feature extraction of detected motor units such as peak-to-peak amplitude, latency, integrated EMG and Min-max time intervals; and finally visualization of the outputs as Colormap images. In comparing the automatic method vs. manual detection on 700 EMG signals from five individuals, the new approach decreased the processing time from several hours to less than 15 seconds for each set of data, and demonstrated an average accuracy of 98.28% based on the combined false positive and false negative error rates. The sensitivity of this method to the signal-to-noise ratio (SNR) was tested using simulated EMG signals and compared to two existing methods, where the novel technique showed much lower sensitivity to the SNR. PMID:29020054

Occurrence of perfluorinated compounds in raw water from New Jersey public drinking water systems.

PubMed

Post, Gloria B; Louis, Judith B; Lippincott, R Lee; Procopio, Nicholas A

2013-01-01

Perfluorooctanoic acid (PFOA) and perfluorooctane sulfonic acid (PFOS) were previously detected (≥ 4 ng/L) in 65% and 30%, respectively, of 23 New Jersey (NJ) public drinking water systems (PWS) sampled in 2006. We now report on a 2009 study of the occurrence of PFOA, PFOS, and eight other perfluorinated compounds (PFCs) in raw water samples from 30 intakes (18 groundwater and 12 surface water) from 29 additional NJ PWS. Between 1 and 8 PFCs were detected (≥ 5 ng/L) in 21 (70%) of 30 PWS samples at total PFC concentrations of 5-174 ng/L. Although PFOA was the most commonly detected PFC (57% of samples) and was found at the highest maximum concentration (100 ng/L), some of the higher levels of other PFCs were at sites with little or no PFOA. Perfluorononanoic acid was detected more frequently (30%) and at higher concentrations (up to 96 ng/L) than in raw or finished drinking water elsewhere, and it was found at several sites as the sole or predominant PFC, a pattern not reported in other drinking water studies. PFOS, perfluoropentanoic acid, and perfluorohexanoic acid were each detected in more than 20% of samples, while perfluoroheptanoic acid, perfluorobutane sulfonic acid, and perfluorohexane sulfonic acid were detected less frequently. Perfluorobutanoic acid was found only once (6 ng/L), and perfluorodecanoic acid was not detected. Total PFCs were highest in two reservoirs near an airfield; these were also the only sites with total perfluorosulfonic acids higher than total perfluorocarboxylic acids (PFCAs). PFC levels in raw and finished water from the same source were similar at those sites where both were tested. Five wells of two additional NJ PWS known to be contaminated with PFOA were also each sampled 4-9 times in 2010-13 for nine of the same PFCs. Total PFCs (almost completely PFCAs) at one of these PWS located near an industrial source of PFCs were higher than in any other PWS tested (up to 330 ng/L). These results show that multiple PFCs are commonly found in raw water from NJ PWS. Future work is needed to develop approaches for assessing the potential human health risks of exposure to mixtures of PFCs found in drinking water and other environmental media.

Detecting space-time disease clusters with arbitrary shapes and sizes using a co-clustering approach.

PubMed

Ullah, Sami; Daud, Hanita; Dass, Sarat C; Khan, Habib Nawaz; Khalil, Alamgir

2017-11-06

Ability to detect potential space-time clusters in spatio-temporal data on disease occurrences is necessary for conducting surveillance and implementing disease prevention policies. Most existing techniques use geometrically shaped (circular, elliptical or square) scanning windows to discover disease clusters. In certain situations, where the disease occurrences tend to cluster in very irregularly shaped areas, these algorithms are not feasible in practise for the detection of space-time clusters. To address this problem, a new algorithm is proposed, which uses a co-clustering strategy to detect prospective and retrospective space-time disease clusters with no restriction on shape and size. The proposed method detects space-time disease clusters by tracking the changes in space-time occurrence structure instead of an in-depth search over space. This method was utilised to detect potential clusters in the annual and monthly malaria data in Khyber Pakhtunkhwa Province, Pakistan from 2012 to 2016 visualising the results on a heat map. The results of the annual data analysis showed that the most likely hotspot emerged in three sub-regions in the years 2013-2014. The most likely hotspots in monthly data appeared in the month of July to October in each year and showed a strong periodic trend.

Epidemiology of Theileria bicornis among black and white rhinoceros metapopulation in Kenya.

PubMed

Otiende, Moses Y; Kivata, Mary W; Makumi, Joseph N; Mutinda, Mathew N; Okun, Daniel; Kariuki, Linus; Obanda, Vincent; Gakuya, Francis; Mijele, Dominic; Soriguer, Ramón C; Alasaad, Samer

2015-01-17

A huge effort in rhinoceros conservation has focused on poaching and habitat loss as factors leading to the dramatic declines in the endangered eastern black rhinoceros (Diceros bicornis michaeli) and the southern white rhinoceros (Ceratotherium simum simum). Nevertheless, the role disease and parasite infections play in the mortality of protected populations has largely received limited attention. Infections with piroplasmosis caused by Babesia bicornis and Theileria bicornis has been shown to be fatal especially in small and isolated populations in Tanzania and South Africa. However, the occurrence and epidemiology of these parasites in Kenyan rhinoceros is not known. Utilizing 18S rRNA gene as genetic marker to detect rhinoceros infection with Babesia and Theileria, we examined blood samples collected from seven rhinoceros populations consisting of 114 individuals of black and white rhinoceros. The goal was to determine the prevalence in Kenyan populations, and to assess the association of Babesia and Theileria infection with host species, age, sex, location, season and population mix (only black rhinoceros comparing to black and white rhinoceros populations). We did not detect any infection with Babesia in the sequenced samples, while the prevalence of T. bicornis in the Kenyan rhinoceros population was 49.12% (56/114). White rhinoceros had significantly higher prevalence of infection (66%) compared to black rhinoceros (43%). The infection of rhinoceros with Theileria was not associated with animal age, sex or location. The risk of infection with Theileria was not higher in mixed species populations compared to populations of pure black rhinoceros. In the rhinoceros studied, we did not detect the presence of Babesia bicornis, while Theileria bicornis was found to have a 49.12% prevalence with white rhinoceros showing a higher prevalence (66%) comparing with black rhinoceros (43%). Other factors such as age, sex, location, and population mix were not found to play a significant role.

Diversity and distribution of mayflies (Ephemeroptera), stoneflies (Plecoptera), and caddisflies (Trichoptera) of the South Platte River Basin, Colorado, Nebraska, and Wyoming, 1873-2010

USGS Publications Warehouse

Zuellig, Robert E.; Heinold, Brian D.; Kondratieff, Boris C.; Ruiter, David E.

2012-01-01

The U.S. Geological Survey, in cooperation with the C.P. Gillette Museum of Arthropod Diversity (Colorado State University, Fort Collins, Colorado), compiled collection record data to document the historical and present-day occurrence of mayfly, stonefly, and caddisfly species in the South Platte River Basin. Data were compiled from records collected between 1873 and 2010 to identify where regional knowledge about species occurrence in the basin is lacking and to encourage future researchers to locate additional populations of these poorly understood but very important organisms. This report provides a description of how data were compiled, a map of approximate collection locations, a listing of the most recent collection records from unique locations, general remarks for each species, a species list with selected summary information, and distribution maps of species collection records.

Occurrence, characterization, and potential predictors of verotoxigenic Escherichia coli, Listeria monocytogenes, and Salmonella in surface water used for produce irrigation in the Lower Mainland of British Columbia, Canada

PubMed Central

Falardeau, Justin; Johnson, Roger P.; Pagotto, Franco

2017-01-01

Produce has become a major source of foodborne illness, and may become contaminated through surface water irrigation. The objectives of this study were to (i) determine the frequency of verotoxigenic E. coli (VTEC), Listeria monocytogenes, and Salmonella in surface waters used for irrigation in the Lower Mainland of British Columbia, (ii) assess the suitability of fecal coliforms and generic E. coli as hygiene indicators, and (iii) investigate the correlations of environmental factors with pathogen occurrence. Water samples were collected semi-monthly for 18 months from seven irrigation ditches across the Serpentine and Sumas watersheds. VTEC colonies on water filters were detected using a verotoxin colony immunoblot, and the presence of virulence genes vt1 and vt2 was ascertained via multiplex PCR. Detection of L. monocytogenes and Salmonella was completed using standard, Health Canada Compendium of Analytical Methods. Fecal coliforms and generic E. coli were enumerated by 3M™ Petrifilm™ and filtration methods, and meteorological and geographic data were collected from government records. VTEC, L. monocytogenes, and Salmonella were detected in 4.93%, 10.3%, and 2.69% of 223 samples, respectively. L. monocytogenes occurrence was greatest in the Serpentine watershed (χ2; p < 0.05), and was most common during the winter and fall (Fisher exact test; p < 0.05). Site dependence of VTEC and Salmonella occurrence was observed within watersheds (Fisher’s exact test; p < 0.10). Pathogen occurrence correlated with fecal coliform counts (r = 0.448), while VTEC occurrence also correlated with precipitation over the five days before sampling (r = 0.239). The density of upstream livestock correlated with VTEC (rs = 0.812), and L. monocytogenes (rs = 0.841) detection. These data show that foodborne pathogens are present in the waters used for irrigation in the Lower Mainland of British Columbia, but their frequency may depend on spatial and temporal factors. PMID:28953937

Sensor and information fusion for improved hostile fire situational awareness

NASA Astrophysics Data System (ADS)

Scanlon, Michael V.; Ludwig, William D.

2010-04-01

A research-oriented Army Technology Objective (ATO) named Sensor and Information Fusion for Improved Hostile Fire Situational Awareness uniquely focuses on the underpinning technologies to detect and defeat any hostile threat; before, during, and after its occurrence. This is a joint effort led by the Army Research Laboratory, with the Armaments and the Communications and Electronics Research, Development, and Engineering Centers (CERDEC and ARDEC) partners. It addresses distributed sensor fusion and collaborative situational awareness enhancements, focusing on the underpinning technologies to detect/identify potential hostile shooters prior to firing a shot and to detect/classify/locate the firing point of hostile small arms, mortars, rockets, RPGs, and missiles after the first shot. A field experiment conducted addressed not only diverse modality sensor performance and sensor fusion benefits, but gathered useful data to develop and demonstrate the ad hoc networking and dissemination of relevant data and actionable intelligence. Represented at this field experiment were various sensor platforms such as UGS, soldier-worn, manned ground vehicles, UGVs, UAVs, and helicopters. This ATO continues to evaluate applicable technologies to include retro-reflection, UV, IR, visible, glint, LADAR, radar, acoustic, seismic, E-field, narrow-band emission and image processing techniques to detect the threats with very high confidence. Networked fusion of multi-modal data will reduce false alarms and improve actionable intelligence by distributing grid coordinates, detection report features, and imagery of threats.

Occurrence of antibiotics in wastewater treatment facilities in Wisconsin, USA

USGS Publications Warehouse

Karthikeyan, K.G.; Meyer, M.T.

2006-01-01

Samples from several wastewater treatment facilities in Wisconsin were screened for the presence of 21 antibiotic compounds. These facilities spanned a range of community size served (average daily flow from 0.0212 to 23.6 million gallons/day), secondary treatment processes, geographic locations across the state, and they discharged the treated effluents to both surface and ground waters (for ground water after a soil passage). A total of six antibiotic compounds were detected (1-5 compounds per site), including two sulfonamides (sulfamethazine, sulfamethoxazole), one tetracycline (tetracycline), fluoroquinolone (ciprofloxacin), macrolide (erythromycin-H2O) and trimethoprim. The frequency of detection of antibiotics was in the following order: tetracycline and trimethoprim (80%) > sulfamethoxazole (70%) > erythromycin-H2O (45%) > ciprofloxacin (40%) > sulfamethazine (10%). However, the soluble concentrations were in the parts-per-billion (ppb) range (??? 1.3 ??g/L), and importantly were unaffected by the size of the wastewater treatment facility. The concentrations detected were within an order of magnitude of those reported for similar systems in Europe and Canada: they were within a factor of two in comparison to those reported for Canada but generally lower relative to those measured in wastewater systems in Europe. Only sulfamethoxazole and tetracycline were detected in groundwater monitoring wells adjacent to the treatment systems. Future intensive wastewater monitoring programs in Wisconsin may be limited to the six antibiotic compounds detected in this study. ?? 2005 Elsevier B.V. All rights reserved.

Invasive Shrub Mapping in an Urban Environment from Hyperspectral and LiDAR-Derived Attributes.

PubMed

Chance, Curtis M; Coops, Nicholas C; Plowright, Andrew A; Tooke, Thoreau R; Christen, Andreas; Aven, Neal

2016-01-01

Proactive management of invasive species in urban areas is critical to restricting their overall distribution. The objective of this work is to determine whether advanced remote sensing technologies can help to detect invasions effectively and efficiently in complex urban ecosystems such as parks. In Surrey, BC, Canada, Himalayan blackberry ( Rubus armeniacus ) and English ivy ( Hedera helix ) are two invasive shrub species that can negatively affect native ecosystems in cities and managed urban parks. Random forest (RF) models were created to detect these two species using a combination of hyperspectral imagery, and light detection and ranging (LiDAR) data. LiDAR-derived predictor variables included irradiance models, canopy structural characteristics, and orographic variables. RF detection accuracy ranged from 77.8 to 87.8% for Himalayan blackberry and 81.9 to 82.1% for English ivy, with open areas classified more accurately than areas under canopy cover. English ivy was predicted to occur across a greater area than Himalayan blackberry both within parks and across the entire city. Both Himalayan blackberry and English ivy were mostly located in clusters according to a Local Moran's I analysis. The occurrence of both species decreased as the distance from roads increased. This study shows the feasibility of producing highly accurate detection maps of plant invasions in urban environments using a fusion of remotely sensed data, as well as the ability to use these products to guide management decisions.

Occurrence of antibiotics in wastewater treatment facilities in Wisconsin, USA.

PubMed

Karthikeyan, K G; Meyer, Michael T

2006-05-15

Samples from several wastewater treatment facilities in Wisconsin were screened for the presence of 21 antibiotic compounds. These facilities spanned a range of community size served (average daily flow from 0.0212 to 23.6 million gallons/day), secondary treatment processes, geographic locations across the state, and they discharged the treated effluents to both surface and ground waters (for ground water after a soil passage). A total of six antibiotic compounds were detected (1-5 compounds per site), including two sulfonamides (sulfamethazine, sulfamethoxazole), one tetracycline (tetracycline), fluoroquinolone (ciprofloxacin), macrolide (erythromycin-H(2)O) and trimethoprim. The frequency of detection of antibiotics was in the following order: tetracycline and trimethoprim (80%)>sulfamethoxazole (70%)>erythromycin-H(2)O (45%)>ciprofloxacin (40%)>sulfamethazine (10%). However, the soluble concentrations were in the parts-per-billion (ppb) range (

Geophysical mapping of palsa peatland permafrost

NASA Astrophysics Data System (ADS)

Sjöberg, Y.; Marklund, P.; Pettersson, R.; Lyon, S. W.

2014-10-01

Permafrost peatlands are hydrological and biogeochemical hotspots in the discontinuous permafrost zone. Non-intrusive geophysical methods offer possibility to map current permafrost spatial distributions in these environments. In this study, we estimate the depths to the permafrost table surface and base across a peatland in northern Sweden, using ground penetrating radar and electrical resistivity tomography. Seasonal thaw frost tables (at ~0.5 m depth), taliks (2.1-6.7 m deep), and the permafrost base (at ~16 m depth) could be detected. Higher occurrences of taliks were discovered at locations with a lower relative height of permafrost landforms indicative of lower ground ice content at these locations. These results highlight the added value of combining geophysical techniques for assessing spatial distribution of permafrost within the rapidly changing sporadic permafrost zone. For example, based on a simple thought experiment for the site considered here, we estimated that the thickest permafrost could thaw out completely within the next two centuries. There is a clear need, thus, to benchmark current permafrost distributions and characteristics particularly in under studied regions of the pan-arctic.

Geophysical mapping of palsa peatland permafrost

NASA Astrophysics Data System (ADS)

Sjöberg, Y.; Marklund, P.; Pettersson, R.; Lyon, S. W.

2015-03-01

Permafrost peatlands are hydrological and biogeochemical hotspots in the discontinuous permafrost zone. Non-intrusive geophysical methods offer a possibility to map current permafrost spatial distributions in these environments. In this study, we estimate the depths to the permafrost table and base across a peatland in northern Sweden, using ground penetrating radar and electrical resistivity tomography. Seasonal thaw frost tables (at ~0.5 m depth), taliks (2.1-6.7 m deep), and the permafrost base (at ~16 m depth) could be detected. Higher occurrences of taliks were discovered at locations with a lower relative height of permafrost landforms, which is indicative of lower ground ice content at these locations. These results highlight the added value of combining geophysical techniques for assessing spatial distributions of permafrost within the rapidly changing sporadic permafrost zone. For example, based on a back-of-the-envelope calculation for the site considered here, we estimated that the permafrost could thaw completely within the next 3 centuries. Thus there is a clear need to benchmark current permafrost distributions and characteristics, particularly in under studied regions of the pan-Arctic.

Searching for storm water inflows in foul sewers using fibre-optic distributed temperature sensing.

PubMed

Schilperoort, Rémy; Hoppe, Holger; de Haan, Cornelis; Langeveld, Jeroen

2013-01-01

A major drawback of separate sewer systems is the occurrence of illicit connections: unintended sewer cross-connections that connect foul water outlets from residential or industrial premises to the storm water system and/or storm water outlets to the foul sewer system. The amount of unwanted storm water in foul sewer systems can be significant, resulting in a number of detrimental effects on the performance of the wastewater system. Efficient removal of storm water inflows into foul sewers requires knowledge of the exact locations of the inflows. This paper presents the use of distributed temperature sensing (DTS) monitoring data to localize illicit storm water inflows into foul sewer systems. Data results from two monitoring campaigns in foul sewer systems in the Netherlands and Germany are presented. For both areas a number of storm water inflow locations can be derived from the data. Storm water inflow can only be detected as long as the temperature of this inflow differs from the in-sewer temperatures prior to the event. Also, the in-sewer propagation of storm and wastewater can be monitored, enabling a detailed view on advection.

Noise-induced tinnitus: auditory evoked potential in symptomatic and asymptomatic patients.

PubMed

Santos-Filha, Valdete Alves Valentins dos; Samelli, Alessandra Giannella; Matas, Carla Gentile

2014-07-01

We evaluated the central auditory pathways in workers with noise-induced tinnitus with normal hearing thresholds, compared the auditory brainstem response results in groups with and without tinnitus and correlated the tinnitus location to the auditory brainstem response findings in individuals with a history of occupational noise exposure. Sixty individuals participated in the study and the following procedures were performed: anamnesis, immittance measures, pure-tone air conduction thresholds at all frequencies between 0.25-8 kHz and auditory brainstem response. The mean auditory brainstem response latencies were lower in the Control group than in the Tinnitus group, but no significant differences between the groups were observed. Qualitative analysis showed more alterations in the lower brainstem in the Tinnitus group. The strongest relationship between tinnitus location and auditory brainstem response alterations was detected in individuals with bilateral tinnitus and bilateral auditory brainstem response alterations compared with patients with unilateral alterations. Our findings suggest the occurrence of a possible dysfunction in the central auditory nervous system (brainstem) in individuals with noise-induced tinnitus and a normal hearing threshold.

Real-time assessment of fog-related crashes using airport weather data: a feasibility analysis.

PubMed

Ahmed, Mohamed M; Abdel-Aty, Mohamed; Lee, Jaeyoung; Yu, Rongjie

2014-11-01

The effect of reduction of visibility on crash occurrence has recently been a major concern. Although visibility detection systems can help to mitigate the increased hazard of limited-visibility, such systems are not widely implemented and many locations with no systems are experiencing considerable number of fatal crashes due to reduction in visibility caused by fog and inclement weather. On the other hand, airports' weather stations continuously monitor all climate parameters in real-time, and the gathered data may be utilized to mitigate the increased risk for the adjacent roadways. This study aims to examine the viability of using airport weather information in real-time road crash risk assessment in locations with recurrent fog problems. Bayesian logistic regression was utilized to link six years (2005-2010) of historical crash data to real-time weather information collected from eight airports in the State of Florida, roadway characteristics and aggregate traffic parameters. The results from this research indicate that real-time weather data collected from adjacent airports are good predictors to assess increased risk on highways. Copyright © 2014 Elsevier Ltd. All rights reserved.

Spatial analysis of falls in an urban community of Hong Kong

PubMed Central

Lai, Poh C; Low, Chien T; Wong, Martin; Wong, Wing C; Chan, Ming H

2009-01-01

Background Falls are an issue of great public health concern. This study focuses on outdoor falls within an urban community in Hong Kong. Urban environmental hazards are often place-specific and dependent upon the built features, landscape characteristics, and habitual activities. Therefore, falls must be examined with respect to local situations. Results This paper uses spatial analysis methods to map fall occurrences and examine possible environmental attributes of falls in an urban community of Hong Kong. The Nearest neighbour hierarchical (Nnh) and Standard Deviational Ellipse (SDE) techniques can offer additional insights about the circumstances and environmental factors that contribute to falls. The results affirm the multi-factorial nature of falls at specific locations and for selected groups of the population. Conclusion The techniques to detect hot spots of falls yield meaningful results that enable the identification of high risk locations. The combined use of descriptive and spatial analyses can be beneficial to policy makers because different preventive measures can be devised based on the types of environmental risk factors identified. The analyses are also important preludes to establishing research hypotheses for more focused studies. PMID:19291326

Implementation of Multiple Host Nodes in Wireless Sensing Node Network System for Landslide Monitoring

NASA Astrophysics Data System (ADS)

Abas, Faizulsalihin bin; Takayama, Shigeru

2015-02-01

This paper proposes multiple host nodes in Wireless Sensing Node Network System (WSNNS) for landslide monitoring. As landslide disasters damage monitoring system easily, one major demand in landslide monitoring is the flexibility and robustness of the system to evaluate the current situation in the monitored area. For various reasons WSNNS can provide an important contribution to reach that aim. In this system, acceleration sensors and GPS are deployed in sensing nodes. Location information by GPS, enable the system to estimate network topology and enable the system to perceive the location in emergency by monitoring the node mode. Acceleration sensors deployment, capacitate this system to detect slow mass movement that can lead to landslide occurrence. Once deployed, sensing nodes self-organize into an autonomous wireless ad hoc network. The measurement parameter data from sensing nodes is transmitted to Host System via host node and "Cloud" System. The implementation of multiple host nodes in Local Sensing Node Network System (LSNNS), improve risk- management of the WSNNS for real-time monitoring of landslide disaster.

Spatial and space-time clustering of tuberculosis in Gurage Zone, Southern Ethiopia.

PubMed

Tadesse, Sebsibe; Enqueselassie, Fikre; Hagos, Seifu

2018-01-01

Spatial targeting is advocated as an effective method that contributes for achieving tuberculosis control in high-burden countries. However, there is a paucity of studies clarifying the spatial nature of the disease in these countries. This study aims to identify the location, size and risk of purely spatial and space-time clusters for high occurrence of tuberculosis in Gurage Zone, Southern Ethiopia during 2007 to 2016. A total of 15,805 patient data that were retrieved from unit TB registers were included in the final analyses. The spatial and space-time cluster analyses were performed using the global Moran's I, Getis-Ord [Formula: see text] and Kulldorff's scan statistics. Eleven purely spatial and three space-time clusters were detected (P <0.001).The clusters were concentrated in border areas of the Gurage Zone. There were considerable spatial variations in the risk of tuberculosis by year during the study period. This study showed that tuberculosis clusters were mainly concentrated at border areas of the Gurage Zone during the study period, suggesting that there has been sustained transmission of the disease within these locations. The findings may help intensify the implementation of tuberculosis control activities in these locations. Further study is warranted to explore the roles of various ecological factors on the observed spatial distribution of tuberculosis.

Occurrence of Phlebitis: A Systematic Review and Meta-analysis.

PubMed

Chang, Wen P; Peng, Yu X

Peripheral venous catheters (PVCs) are commonly used in clinical practice. However, varying degrees of phlebitis often occur in patients receiving intravenous injections. The relevant literature suggests that phlebitis occurrence is highly associated with the catheter gauge, insertion site, and catheterization duration. Nevertheless, no meta-analysis has been performed on the influence of these three factors on the occurrence of phlebitis. The objective of this study was to determine whether any significant differences exist in the occurrence of phlebitis between catheters of 20 gauge or smaller and those larger than 20 gauge, between catheters inserted in the antecubital fossa and those inserted in other locations on the upper limbs, or between catheters inserted for more than 96 hours and those inserted for 96 hours or less. Using a systematic approach, we searched for literature published between 2006 and 2017 in the Cumulative Index to Nursing and Allied Health Literature (CINAHL), PubMed, ProQuest, and Cochrane Library databases. We used Comprehensive Meta-analysis Version 2 to perform our meta-analysis. After the screening and review processes, we identified 17 studies that met our selection conditions. Among these studies, 14 contained complete data for meta-analysis. These studies involved 4,343 patients and 5,846 PVCs. Regarding the overall effect size in the meta-analysis, the results of the forest plot comparing catheters of 20 gauge or smaller and those larger than 20 gauge presented a risk ratio (RR) of 0.88 (95% confidence interval [0.67, 1.17], p = .380), indicating no statistically significant difference in the occurrence of phlebitis between catheters of the aforementioned gauges. The results of the forest plot comparing catheters inserted in the antecubital fossa and those inserted in other locations on the upper limbs presented an RR of 1.05 (95% confidence interval [0.82, 1.34], p = .696), indicating no statistically significant difference in the occurrence of phlebitis between catheters inserted in the aforementioned locations. The results of the forest plot comparing catheters inserted for more than 96 hours and those inserted for 96 hours or less presented an RR of 1.13 (95% confidence interval [0.49, 2.61], p = .779), indicating no statistically significant difference in the occurrence of phlebitis between catheters inserted for the aforementioned durations. The empirical results of this meta-analysis can serve as a reference for hospital management for selecting the PVC gauge, insertion site, and catheterization duration. In addition to the three factors that we analyzed, whether any other factors influence the occurrence of phlebitis in patients with catheter implantation is worth investigating in future research.

Occurrence and Environmental Effects of Boscalid and Other Fungicides in Three Targeted Use Areas in the United States

NASA Astrophysics Data System (ADS)

Reilly, T. J.; Smalling, K. L.; Wilson, E. R.

2011-12-01

Fungicides are typically used to control the outbreak of persistent, historically significant plant diseases like late blight (caused by Phytophthora infestans and responsible for the Irish Potato famine of 1846) and newer plant diseases like Asian Soy Rust, both of which are potentially devastating if not controlled. Of the more than 67,000 pesticide products currently registered for use in the United States, over 3,600 are used to combat fungal diseases. Although they are widely used, relatively little is known about the fate and potential secondary effects of fungicides in the aquatic environment. Even less is known about the fate and environmental occurrence of recently registered fungicides including boscalid, which was first registered for use in the US in 2003. Unlike most other pesticides, multiple fungicides are typically applied as a prophylactic crop protectant upwards of ten times per season (depending upon conditions and crop type), but at lower application rates than herbicides or insecticides. This difference in usage increases the likelihood of chronic exposure of aquatic ecosystems to low concentrations of fungicides. Using a newly developed analytical method, the U.S. Geological Survey measured 33 fungicides in surface water and shallow groundwater in three geographic areas of intense fungicide use across the US. Sampling sites were selected near or within farms using prophylactic fungicides at rates and types typical of the crop type and their geographic location. At least one fungicide was detected in 75% of the surface waters (n=60) and 58% of the groundwater (n=12) samples. Twelve fungicides were detected in surface- and groundwater including boscalid (72%), azoxystrobin (51%), pyraclostrobin (40%), chlorothalonil (38%) and pyrimethanil (28%). Boscalid was the most frequently detected pesticide and has not been previously documented in the aquatic environment. In this study, an average of 44% of the pesticide concentration in a water sample was derived from a mixture of fungicides. Ongoing studies are also evaluating the occurrence of fungicides in aquatic insect larvae and the effects of fungicides on the obligate endosymbiont fungi (Trichomycetes) which reside in their guts. Surface water samples and larval hosts of gut fungi were collected from impaired and reference sites between April and December 2010 in southwestern Idaho, USA. Several fungicides (including azoxystrobin, boscalid and pyraclostrobin) were detected in black fly larvae collected from streams adjacent to agricultural fields where fungicides were being applied throughout the growing season. Hosts from control sites contained gut fungi with higher density, diversity and spore production, while those collected from the two impacted sites typically had lower diversity and fecundity (spore production) of native gut fungi. This study provides one of the first multi-regional assessments of the environmental occurrence of fungicides in the US and indicates that fungicides directly affect the non-target fungal communities commonly found in the guts of stream invertebrates.

Nitrate and pesticides in ground water in the eastern San Joaquin Valley, California : occurrence and trends

USGS Publications Warehouse

Burow, Karen R.; Stork, Sylvia V.; Dubrovsky, N.M.

1998-01-01

The occurrence of nitrate and pesticides in ground water in California's eastern San Joaquin Valley may be greatly influenced by the long history of intensive farming and irrigation and the generally permeable sediments. This study, which is part of the U.S. Geological Survey National Water-Quality Assessment Program, was done to assess the quality of the ground water and to do a preliminary evaluation of the temporal trends in nitrate and pesticides in the alluvial fans of the eastern San Joaquin Valley. Ground-water samples were collected from 30 domestic wells in 1995 (each well was sampled once during 1995). The results of the analyses of these samples were related to various physical and chemical factors in an attempt to understand the processes that control the occurrence and the concentrations of nitrate and pesticides. A preliminary evaluation of the temporal trends in the occurrence and the concentration of nitrate and pesticides was done by comparing the results of the analyses of the 1995 ground-water samples with the results of the analyses of the samples collected in 1986-87 as part of the U.S. Geological Survey Regional Aquifer-System Analysis Program. Nitrate concentrations (dissolved nitrate plus nitrite, as nitrogen) in ground water sampled in 1995 ranged from less than 0.05 to 34 milligrams per liter, with a median concentration of 4.6 milligrams per liter. Nitrate concentrations exceeded the maximum contaminant level of 10 milligrams per liter (as nitrogen) in 5 of the 30 ground-water samples (17 percent), whereas 12 of the 30 samples (40 percent) had nitrate concentrations less than 3.0 milligrams per liter. The high nitrate concentrations were associated with recently recharged, well-oxygenated ground water that has been affected by agriculture (indicated by the positive correlations between nitrate, dissolved-oxygen, tritium, and specific conductance). Twelve pesticides were detected in 21 of the 30 ground-water samples (70 percent) in 1995, although only 5 pesticides were detected in more than 10 percent of the ground-water samples. All 12 pesticides were detected at concentrations below the maximum contaminant levels, except the banned soil fumigants 1,2-dibromo-3-chloropropane (3 detections) and 1,2-dibromoethane (1 detection). Atrazine and desethyl atrazine (a transformation product of atrazine) were the most frequently detected pesticides; they were detected in 11 ground-water samples. The frequent detections of atrazine and desethyl atrazine may be related either to past applications of atrazine or to recent application on rights-of-way. Simazine was detected in 10 ground-water samples and diuron was detected in 4 ground-water samples. The detections of simazine and diuron are generally consistent with their reported applications on the crops near the wells where they were detected. 1,2,3-trichloropropane, a manufacturing by-product of 1,2-dichloropropane and 1,3- dichloropropene formulations, was detected in 4 ground-water samples. The occurrence of 1,2,3-trichloropropane, 1,2-dibromo-3-chloropropane, and 1,2-dibromoethane is probably related to past use. Similar to nitrate concentrations, pesticide occurrence was positively correlated to dissolved-oxygen concentrations, indicating that areas with high dissolved-oxygen concentrations may be vulnerable to contamination by nitrate and pesticides. High dissolved-oxygen concentrations may be associated with water that has been rapidly recharged. A comparison of the concentrations and the occurrence of nitrate and pesticides between 1986-87 and 1995 indicates that nitrate concentrations may pose a greater threat to the quality of the ground-water resource in this region than pesticides, in the context of current drinking-water standards. Nitrate concentrations were significantly higher in the 1995 ground-water samples than in the 1986-87 samples collected from the same wells. Although the number of pesticide detections in 1995 is higher than the numb

A novel approach for detecting heat waves: the Standardized Heat-Wave Index.

NASA Astrophysics Data System (ADS)

Cucchi, Marco; Petitta, Marcello; Calmanti, Sandro

2016-04-01

Extreme temperatures have an impact on the energy balance of any living organism and on the operational capabilities of critical infrastructures. The ability to capture the occurrence of extreme temperature events is therefore an essential property of a multi-hazard extreme climate indicator. In this paper we introduce a new index for the detection of such extreme temperature events called SHI (Standardized Heat-Wave Index), developed in the context of XCF project for the construction of a multi-hazard extreme climate indicator (ECI). SHI is a probabilistic index based on the analysis of maximum daily temperatures time series; it is standardized, enabling comparisons overs space/time and with other indices, and it is capable of describing both extreme cold and hot events. Given a particular location, SHI is constructed using the time series of local maximum daily temperatures with the following procedure: three-days cumulated maximum daily temperatures are assigned to each day of the time series; probabilities of occurrence in the same months the reference days belong to are computed for each of the previous calculated values; such probability values are thus projected on a standard normal distribution, obtaining our standardized indices. In this work we present results obtained using NCEP Reanalysis dataset for air temperature at sigma 0.995 level, which timespan ranges from 1948 to 2014. Given the specific framework of this work, the geographical focus of this study is limited to the African continent. We present a validation of the index by showing its use for monitoring heat-waves under different climate regimes.

Two-day period fluctuation of PMC occurrence over Syowa Station, Antarctica observed by a ground-based lidar and AIM satellite.

NASA Astrophysics Data System (ADS)

Nakamura, T.; Suzuki, H.; Tsutsumi, M.; Ejiri, M. K.; Tomikawa, Y.; Abo, M.; Kawahara, T.; Tsuda, T. T.; Nishiyama, T.

2014-12-01

A Rayleigh/Raman lidar system has been operated by the Japanese Antarctic Research Expedition (JARE) since February, 2011 (JARE 52nd) in Syowa Station Antarctica (69.0S, 39.5E). The lidar system consists of a pulsed Nd:YAG laser (355nm) as a transmitter and two telescopes with four photo multiplier tubes which are to detect Rayleigh scattered light from low and high atmosphere at 355 nm and N2 Raman emission at 387nm. Polar Mesospheric Cloud (PMC) was detected by the lidar at 22:30UT (+3hr for LT) on Feb 4th, 2011, the first day of a routine operation. This event was the first time to detect PMC over Syowa Station by a lidar [Suzuki et al., Ann. Geophys., 2013]. However, signal to noise ratio (SNR) of the PMC event was not so good due to large shot noises from daytime background signals. Moreover, a receiver system was designed mainly for nighttime observations. In this way, observation of PMC during the midnight sun, which also corresponds to most frequent PMC season, was difficult. Thus, to improve SNR of the PMC observation with the lidar during daytime, a narrow band-pass Fabry-Perot etalon unit has been developed and installed in the receiver system on Dec 2013 by JARE 55th. By using this new system, clear PMC signals were successfully detected under daylight condition during the period of summer operation of JARE55th. During this period of 53 days (from 17 Dec. 2013 to 7 Feb. 2014), only 11 days were with a clear sky and suitable for PMC observation. Thus, it was difficult to study temporal variations on a PMC activity only by using the lidar data. Fortunately, NASA's AIM satellite had passed near Syowa Station and provided with complimentary PMC data during observation gap of the lidar. By combining our lidar data with the AIM/CIPS data, nearly continuous monitoring of PMC variability over Syowa Station was achieved for period between 13th and 18th in January 2014. PMC occurrence with an interval of two days over Syowa Station during the period was clearly confirmed. Co-located MF radar also showed clear two days fluctuation in horizontal wind velocities around PMC altitude during the same period. In this presentation, we will discuss the cause of the two-day oscillation found in PMC occurrence and horizontal wind velocity. In particular, two-day planetary wave will be quantitatively investigated as a potential cause of the fluctuation.

Joint estimation of habitat dynamics and species interactions: disturbance reduces co-occurrence of non-native predators with an endangered toad.

PubMed

Miller, David A W; Brehme, Cheryl S; Hines, James E; Nichols, James D; Fisher, Robert N

2012-11-01

1. Ecologists have long been interested in the processes that determine patterns of species occurrence and co-occurrence. Potential short-comings of many existing empirical approaches that address these questions include a reliance on patterns of occurrence at a single time point, failure to account properly for imperfect detection and treating the environment as a static variable. 2. We fit detection and non-detection data collected from repeat visits using a dynamic site occupancy model that simultaneously accounts for the temporal dynamics of a focal prey species, its predators and its habitat. Our objective was to determine how disturbance and species interactions affect the co-occurrence probabilities of an endangered toad and recently introduced non-native predators in stream breeding habitats. For this, we determined statistical support for alternative processes that could affect co-occurrence frequency in the system. 3. We collected occurrence data at stream segments in two watersheds where streams were largely ephemeral and one watershed dominated by perennial streams. Co-occurrence probabilities of toads with non-native predators were related to disturbance frequency, with low co-occurrence in the ephemeral watershed and high co-occurrence in the perennial watershed. This occurred because once predators were established at a site, they were rarely lost from the site except in cases when the site dried out. Once dry sites became suitable again, toads colonized them much more rapidly than predators, creating a period of predator-free space. 4. We attribute the dynamics to a storage effect, where toads persisting outside the stream environment during periods of drought rapidly colonized sites when they become suitable again. Our results support that even in highly connected stream networks, temporal disturbance can structure frequencies with which breeding amphibians encounter non-native predators. 5. Dynamic multi-state occupancy models are a powerful tool for rigorously examining hypotheses about inter-species and species-habitat interactions. In contrast to previous methods that infer dynamic processes based on static patterns in occupancy, the approach we took allows the dynamic processes that determine species-species and species-habitat interactions to be directly estimated. © 2012 The Authors. Journal of Animal Ecology © 2012 British Ecological Society.

Damage detection based on acceleration data using artificial immune system

NASA Astrophysics Data System (ADS)

Chartier, Sandra; Mita, Akira

2009-03-01

Nowadays, Structural Health Monitoring (SHM) is essential in order to prevent damages occurrence in civil structures. This is a particularly important issue as the number of aged structures is increasing. Damage detection algorithms are often based on changes in the modal properties like natural frequencies, modal shapes and modal damping. In this paper, damage detection is completed by using Artificial Immune System (AIS) theory directly on acceleration data. Inspired from the biological immune system, AIS is composed of several models like negative selection which has a great potential for this study. The negative selection process relies on the fact that T-cells, after their maturation, are sensitive to non self cells and can not detect self cells. Acceleration data were provided by using the numerical model of a 3-story frame structure. Damages were introduced, at particular times, by reduction of story's stiffness. Based on these acceleration data, undamaged data (equivalent to self data) and damaged data (equivalent to non self data) can be obtained and represented in the Hamming shape-space with a binary representation. From the undamaged encoded data, detectors (equivalent to T-cells) are derived and are able to detect damaged encoded data really efficiently by using the rcontiguous bits matching rule. Indeed, more than 95% of detection can be reached when efficient combinations of parameters are used. According to the number of detected data, the localization of damages can even be determined by using the differences between story's relative accelerations. Thus, the difference which presents the highest detection rate, generally up to 89%, is directly linked to the location of damage.

The interaction between RACK1 and WEE1 regulates the growth of gastric cancer cell line HGC27

PubMed Central

Liu, Chao; Ren, Lili; Wang, Yizhao; Liu, Yimeng; Xiao, Jianying

2017-01-01

Receptor of activated C Kinase 1 (RACK1) is an essential scaffold and anchoring protein, which serves an important role in multiple tumorigenesis signaling pathways. The present study aimed to investigate the expression of RACK1 in gastric cancer (GC), and its association with the occurrence and development of GC. In addition, the effect and mechanism of RACK1 overexpression on the growth, and proliferation of GC cells was examined. Firstly, the protein expression of RACK1 was detected in 70 cases of GC tissues and 30 cases of noncancerous tissues using immunohistochemical staining, and the association between clinical and pathological features of GC was analyzed. Secondly, the mRNA and protein expression of RACK1 was determined in the poorly-differentiated human gastric cancer cell line HGC27 and gastric epithelial cell line GES-1. The growth of HGC27 cells following the upregulation of RACK1 was detected using MTT method. Subsequently, the interaction and co-location between RACK1, and WEE1 homolog (S. pombe) (WEE1) in HGC27 cells was confirmed using co-immunoprecipitation and indirect immunofluorescence. The expression level of RACK1 in GC was significantly lower compared with that in pericarcinous tissues (P<0.05). The protein level of RACK1 expression correlated with tumor node metastasis stage, tumor differentiation and lymph node metastasis. The mRNA and protein levels of RACK1 in HGC27 cells were significantly reduced, and overexpressed RACK1 downregulated WEE1 protein expression, thus inhibiting the growth of HGC27 cells. Co-immunoprecipitation and immunofluorescence confirmed that RACK1, and WEE1 interacted and co-located in the cytoplasm of HGC27 cells. Therefore, the abnormal expression of RACK1 in GC tissues was identified to be involved in the occurrence and development of GC. Overexpression of RACK1 was able to inhibit the growth of HGC27 cells. The current study suggests that low expression of RACK1 is an important indicator of poor prognosis of GC. RACK1 and WEE1 interact to regulate the growth of HGC27 cells. PMID:29085480

Involvement of the human midbrain and thalamus in auditory deviance detection.

PubMed

Cacciaglia, Raffaele; Escera, Carles; Slabu, Lavinia; Grimm, Sabine; Sanjuán, Ana; Ventura-Campos, Noelia; Ávila, César

2015-02-01

Prompt detection of unexpected changes in the sensory environment is critical for survival. In the auditory domain, the occurrence of a rare stimulus triggers a cascade of neurophysiological events spanning over multiple time-scales. Besides the role of the mismatch negativity (MMN), whose cortical generators are located in supratemporal areas, cumulative evidence suggests that violations of auditory regularities can be detected earlier and lower in the auditory hierarchy. Recent human scalp recordings have shown signatures of auditory mismatch responses at shorter latencies than those of the MMN. Moreover, animal single-unit recordings have demonstrated that rare stimulus changes cause a release from stimulus-specific adaptation in neurons of the primary auditory cortex, the medial geniculate body (MGB), and the inferior colliculus (IC). Although these data suggest that change detection is a pervasive property of the auditory system which may reside upstream cortical sites, direct evidence for the involvement of subcortical stages in the human auditory novelty system is lacking. Using event-related functional magnetic resonance imaging during a frequency oddball paradigm, we here report that auditory deviance detection occurs in the MGB and the IC of healthy human participants. By implementing a random condition controlling for neural refractoriness effects, we show that auditory change detection in these subcortical stations involves the encoding of statistical regularities from the acoustic input. These results provide the first direct evidence of the existence of multiple mismatch detectors nested at different levels along the human ascending auditory pathway. Copyright © 2015 Elsevier Ltd. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nelson-Moore, J.L.; Collins, D.B.; Hornbaker, A.L.

This two-part report provides an essentially complete listing of radioactive occurrences in Colorado, with a comprehensive bibliography and bibliographic cross-indexes. Part 1 lists approximately 3000 known radioactive occurrences with their locations and brief accounts of the geology, mineralogy, radioactivity, host rock, production data, and source of data for each. The occurrences are classified by host rock and plotted on U.S. Geological Survey 1/sup 0/ x 2/sup 0/ topographic quadrangle maps with a special 1 : 100,000-scale base map for the Uravan mineral belt. Part 2 contains the bibliography of approximately 2500 citations on radioactive mineral occurrences in the state, withmore » cross-indexes by county, host rock, and the special categories of ''Front Range,'' ''Colorado Plateau,'' and ''thorium.'' The term ''occurrence'' as used in this report is defined as any site where the concentration of uranium or thorium is at least 0.01% or where the range of radioactivity is greater than twice the background radioactivity. All citations and occurrence data are stored on computer diskettes for easy retrieval, correction, and updating.« less

Patterns of Occurrence and Marine Mammal Acoustic Behavior in Relation to Navy Sonar Activity Off Jacksonville, Florida.

PubMed

Oswald, Julie N; Norris, Thomas F; Yack, Tina M; Ferguson, Elizabeth L; Kumar, Anurag; Nissen, Jene; Bell, Joel

2016-01-01

Passive acoustic data collected from marine autonomous recording units deployed off Jacksonville, FL (from 13 September to 8 October 2009 and 3 December 2009 to 8 January 2010), were analyzed for detection of cetaceans and Navy sonar. Cetaceans detected included Balaenoptera acutorostrata, Eubalaena glacialis, B. borealis, Physeter macrocephalus, blackfish, and delphinids. E. glacialis were detected at shallow and, somewhat unexpectedly, deep sites. P. macrocephalus were characterized by a strong diel pattern. B. acutorostrata showed the strongest relationship between sonar activity and vocal behavior. These results provide a preliminary assessment of cetacean occurrence off Jacksonville and new insights on vocal responses to sonar.

Tumor location and IDH1 mutation may predict intraoperative seizures during awake craniotomy.

PubMed

Gonen, Tal; Grossman, Rachel; Sitt, Razi; Nossek, Erez; Yanaki, Raneen; Cagnano, Emanuela; Korn, Akiva; Hayat, Daniel; Ram, Zvi

2014-11-01

Intraoperative seizures during awake craniotomy may interfere with patients' ability to cooperate throughout the procedure, and it may affect their outcome. The authors have assessed the occurrence of intraoperative seizures during awake craniotomy in regard to tumor location and the isocitrate dehydrogenase 1 (IDH1) status of the tumor. Data were collected in 137 consecutive patients who underwent awake craniotomy for removal of a brain tumor. The authors performed a retrospective analysis of the incidence of seizures based on the tumor location and its IDH1 mutation status, and then compared the groups for clinical variables and surgical outcome parameters. Tumor location was strongly associated with the occurrence of intraoperative seizures. Eleven patients (73%) with tumor located in the supplementary motor area (SMA) experienced intraoperative seizures, compared with 17 (13.9%) with tumors in the other three non-SMA brain regions (p < 0.0001). Interestingly, there was no significant association between history of seizures and tumor location (p = 0.44). Most of the patients (63.6%) with tumor in the SMA region harbored an IDH1 mutation compared with those who had tumors in non-SMA regions. Thirty-one of 52 patients (60%) with a preoperative history of seizures had an IDH1 mutation (p = 0.02), and 15 of 22 patients (68.2%) who experienced intraoperative seizures had an IDH1 mutation (p = 0.03). In a multivariate analysis, tumor location was found as a significant predictor of intraoperative seizures (p = 0.002), and a trend toward IDH1 mutation as such a predictor was found as well (p = 0.06). Intraoperative seizures were not associated with worse outcome. Patients with tumors located in the SMA are more prone to develop intraoperative seizures during awake craniotomy compared with patients who have a tumor in non-SMA frontal areas and other brain regions. The IDH1 mutation was more common in SMA region tumors compared with other brain regions, and may be an additional risk factor for the occurrence of intraoperative seizures.

Anthropogenic Organic Compounds in Ground Water and Finished Water of Community Water Systems in the Northern Tampa Bay Area, Florida, 2002-04

USGS Publications Warehouse

Metz, Patricia A.; Delzer, Gregory C.; Berndt, Marian P.; Crandall, Christy A.; Toccalino, Patricia L.

2007-01-01

As part of the U.S. Geological Survey's (USGS's) National Water-Quality Assessment (NAWQA) Program, a Source Water-Quality Assessment (SWQA) was conducted in the unconfined and semiconfined portions of the Upper Floridan aquifer system during 2002-04. SWQAs are two-phased sampling activities, wherein phase 1 was designed to evaluate the occurrence of 258 anthropogenic organic compounds (AOCs) in ground water used as source water for 30 of the largest-producing community water system (CWS) wells in the northern Tampa Bay area, Florida. The 258 AOCs included volatile organic compounds (VOCs), pesticides, and other anthropogenic organic compounds (OAOCs). Phase 2 was designed to monitor concentrations in the source water and also the finished water of CWSs for compounds most frequently detected during phase 1. During phase 1 of the SWQA study, 31 of the 258 AOCs were detected in source-water samples collected from CWS wells at low concentrations (less than 1.0 microgram per liter (ug/L)). Twelve AOCs were detected in at least 10 percent of samples. Concentrations from 16 of the 31 detected AOCs were about 2 to 5 orders of magnitude below human-health benchmarks indicating that concentrations were unlikely to be of potential human-health concern. The potential human-health relevance for the remaining 15 detected unregulated AOCs could not be evaluated because no human-health benchmarks were available for these compounds. Hydrogeology, population, and land use were examined to evaluate the effects of these variables on the source water monitored. Approximately three times as many detections of VOCs (27) and pesticides (34) occurred in unconfined areas than in the semiconfined areas (8 VOCs, 14 pesticides). In contrast, 1 OAOC was detected in unconfined areas, and 13 OAOCs were detected in semiconfined areas with 9 of the OAOC detections occurring in samples from two wells located near septic systems. Analyses of population and land use indicated that the number of compounds detected increased as the population surrounding each well increased. Detection frequencies and concentrations for VOCs (particularly chloroform) and pesticides were highest in residential land-use areas. The results of source-water samples from the 30 CWS wells monitored during phase 1 of this SWQA study were compared to four locally conducted studies. These general comparisons indicate that the occurrence of VOCs in other studies is similar to their occurrence in source water of CWSs monitored as part of this SWQA. However, pesticide compounds, especially atrazine and its breakdown products, occurred more frequently in the SWQA study than in the other four studies. Phase 2 of the SWQA assessed AOCs in samples from 11 of the 30 CWS wells and the associated finished water. Overall, 42 AOCs were detected in either source water or finished water and more compounds were detected in finished water than in source water. Specifically, 22 individual AOCs were detected in source water and 27 AOCs were detected in finished water. The total number of detections was greater in the finished water (80) than in the source water (49); however, this was largely due to the creation of disinfection by-products (DBPs) during water treatment. Excluding DBPs, about the same number of total detections was observed in source water (40) and finished water (44). During phase 2, AOC detected concentrations ranged from E0.003 (estimated) to 1,140 ug/L in the source water and from E0.003 to 36.3 ug/L in the finished water. Concentrations of 24 of the 42 compounds were compared to human-health benchmarks and were about 1 to 5 orders of magnitude below their human-health benchmarks indicating that concentrations are unlikely to be of potential human-health concern, excluding DBPs. Concentrations of carbon tetrachloride, however, were within 10 percent of its human-health benchmark, which is considered a level that may warrant inclusion of the compound in a low-concentration, t

Cloud-to-ground lightning activity in Colombia: A 14-year study using lightning location system data

NASA Astrophysics Data System (ADS)

Herrera, J.; Younes, C.; Porras, L.

2018-05-01

This paper presents the analysis of 14 years of cloud-to-ground lightning activity observation in Colombia using lightning location systems (LLS) data. The first Colombian LLS operated from 1997 to 2001. After a few years, this system was upgraded and a new LLS has been operating since 2007. Data obtained from these two systems was analyzed in order to obtain lightning parameters used in designing lightning protection systems. The flash detection efficiency was estimated using average peak current maps and some theoretical results previously published. Lightning flash multiplicity was evaluated using a stroke grouping algorithm resulting in average values of about 1.0 and 1.6 for positive and negative flashes respectively and for both LLS. The time variation of this parameter changes slightly for the years considered in this study. The first stroke peak current for negative and positive flashes shows median values close to 29 kA and 17 kA respectively for both networks showing a great dependence on the flash detection efficiency. The average percentage of negative and positive flashes shows a 74.04% and 25.95% of occurrence respectively. The daily variation shows a peak between 23 and 02 h. The monthly variation of this parameter exhibits a bimodal behavior typical of the regions located near The Equator. The lightning flash density was obtained dividing the study area in 3 × 3 km cells and resulting in maximum average values of 25 and 35 flashes km- 2 year- 1 for each network respectively. A comparison of these results with global lightning activity hotspots was performed showing good correlation. Besides, the lightning flash density variation with altitude shows an inverse relation between these two variables.

Engaging police to identify challenging school crossings and potential improvements.

PubMed

Bull, Catherine B; Von Hagen, Leigh Ann; Lubin, Andrea; Shivaraman, Gayathri; Chibbaro, Daniel

2018-04-26

This paper discusses the value of police officers as vital sources of information regarding pedestrian safety in their communities by presenting results from a survey of traffic safety police officers. The survey requested information on school crossings that the officers considered most challenging for pedestrians. Officers specified the intersections or mid-block locations with school crossings, and answered questions about elements of the locations, such as what makes the locations challenging, and what might be done to improve conditions at these locations. A key finding from the survey is the police officers' identification of challenging intersections or other crossing locations by criteria other than the occurrence of crashes, including reported pedestrian-vehicle near-miss incidents. A broad literature review of pedestrian safety studies provides context for the use of near-miss data in discussions of improvements to pedestrian crossings. Although not typically considered a primary resource for pedestrian safety information, police officers are most often very familiar with their communities, work in locations where pedestrian and motor vehicle traffic can be experienced and observed, and receive information from their staff and members of the public who use pedestrian crossings. The survey findings demonstrate that police officer insights and near-miss data may serve as important supplementary sources of information in the effort to identify locations in need of interventions before crash occurrence. Copyright © 2018 Elsevier Ltd. All rights reserved.

Occurrence of veterinary pharmaceuticals in the aquatic environment in Flanders

NASA Astrophysics Data System (ADS)

Servaes, K.; Vanermen, G.; Seuntjens, P.

2009-04-01

There is a growing interest in the occurrence of pharmaceuticals in the aquatic environment. Pharmaceuticals are classified as so-called ‘emerging pollutants'. ‘Emerging pollutants' are not necessarily new chemical compounds. Often these compounds are already present in the environment for a long time. But, their occurrence and especially their impact on the environment has only recently become clear. Consequently, data on their occurrence are rather scarce. In this study, we focus on the occurrence of veterinary pharmaceuticals in surface water in Flanders. We have only considered active substances administered to cattle, pigs and poultry. Based on the literature and information concerning the use in Belgium, a selection of 25 veterinary pharmaceuticals has been made. This selection consists of the most important antibiotics and antiparasitic substances applied in veterinary medicine in Belgium. We develop an analytical methodology based on UPLC-MS/MS for the detection of these veterinary pharmaceuticals in surface water. Therefore, the mass characteristics as well as the optimum LC conditions will be determined. To obtain limits of detection as low as possible, the samples are concentrated prior to analysis using solid phase extraction (SPE). Different SPE cartridges will be tested during the method development. At first, this SPE sample pre-treatment is performed off-line. In a next step, online SPE is optimized for this purpose. The analytical procedure will be subject to an in-house validation study, thereby determining recovery, repeatability (% RSD), limits of detection and limits of quantification. Finally, the developed methodology will be applied for monitoring the occurrence of veterinary pharmaceuticals in surface water and groundwater in Flanders. These water samples will be taken in areas characterized by intensive cattle breeding. Moreover, the samples will be collected during springtime. In this season, farmers apply manure, stored during winter, onto the fields.

Reported historic asbestos prospects and natural asbestos occurrences in the central United States

USGS Publications Warehouse

Van Gosen, Bradley S.

2006-01-01

This map and its accompanying dataset provide information for 26 natural asbestos occurrences in the Central United States (U.S.), using descriptions found in the geologic literature. Data on location, mineralogy, geology, and relevant literature for each asbestos site are provided. Using the map and digital data in this report, the user can examine the distribution of previously reported asbestos occurrences and their geological characteristics in the Central U.S. This report is part of an ongoing study by the U.S. Geological Survey to identify and map reported natural asbestos occurrences in the U.S., which began with U.S. Geological Survey Open-File Report 2005-1189 (http://pubs.usgs.gov/of/2005/1189/). These reports are intended to provide State and local government agencies and other stakeholders with geologic information on natural occurrences of asbestos in the U.S.

The global compendium of Aedes aegypti and Ae. albopictus occurrence

NASA Astrophysics Data System (ADS)

Kraemer, Moritz U. G.; Sinka, Marianne E.; Duda, Kirsten A.; Mylne, Adrian; Shearer, Freya M.; Brady, Oliver J.; Messina, Jane P.; Barker, Christopher M.; Moore, Chester G.; Carvalho, Roberta G.; Coelho, Giovanini E.; van Bortel, Wim; Hendrickx, Guy; Schaffner, Francis; Wint, G. R. William; Elyazar, Iqbal R. F.; Teng, Hwa-Jen; Hay, Simon I.

2015-07-01

Aedes aegypti and Ae. albopictus are the main vectors transmitting dengue and chikungunya viruses. Despite being pathogens of global public health importance, knowledge of their vectors’ global distribution remains patchy and sparse. A global geographic database of known occurrences of Ae. aegypti and Ae. albopictus between 1960 and 2014 was compiled. Herein we present the database, which comprises occurrence data linked to point or polygon locations, derived from peer-reviewed literature and unpublished studies including national entomological surveys and expert networks. We describe all data collection processes, as well as geo-positioning methods, database management and quality-control procedures. This is the first comprehensive global database of Ae. aegypti and Ae. albopictus occurrence, consisting of 19,930 and 22,137 geo-positioned occurrence records respectively. Both datasets can be used for a variety of mapping and spatial analyses of the vectors and, by inference, the diseases they transmit.

The global compendium of Aedes aegypti and Ae. albopictus occurrence

PubMed Central

Kraemer, Moritz U. G.; Sinka, Marianne E.; Duda, Kirsten A.; Mylne, Adrian; Shearer, Freya M.; Brady, Oliver J.; Messina, Jane P.; Barker, Christopher M.; Moore, Chester G.; Carvalho, Roberta G.; Coelho, Giovanini E.; Van Bortel, Wim; Hendrickx, Guy; Schaffner, Francis; Wint, G. R. William; Elyazar, Iqbal R. F.; Teng, Hwa-Jen; Hay, Simon I.

2015-01-01

Aedes aegypti and Ae. albopictus are the main vectors transmitting dengue and chikungunya viruses. Despite being pathogens of global public health importance, knowledge of their vectors’ global distribution remains patchy and sparse. A global geographic database of known occurrences of Ae. aegypti and Ae. albopictus between 1960 and 2014 was compiled. Herein we present the database, which comprises occurrence data linked to point or polygon locations, derived from peer-reviewed literature and unpublished studies including national entomological surveys and expert networks. We describe all data collection processes, as well as geo-positioning methods, database management and quality-control procedures. This is the first comprehensive global database of Ae. aegypti and Ae. albopictus occurrence, consisting of 19,930 and 22,137 geo-positioned occurrence records respectively. Both datasets can be used for a variety of mapping and spatial analyses of the vectors and, by inference, the diseases they transmit. PMID:26175912

WATER QUALITY AT FIVE MARINAS IN LAKE TEXOMA AS RELATED TO METHYL TERT-BUTYL ETHER (MTBE)

EPA Science Inventory

Occurrence of methyl tert-butyl ether (MTBE) in five marinas was monitored between June 1999 and November 2000 in Lake Texoma located on the border of Oklahoma and Texas. MTBE is a commonly used gasoline additive and a suspected carcinogen. Lake water was collected at locations i...

Constraints on deep moonquake focal mechanisms through analyses of tidal stress

USGS Publications Warehouse

Weber, R.C.; Bills, B.G.; Johnson, C.L.

2009-01-01

[1] A relationship between deep moonquake occurrence and tidal forcing is suggested by the monthly periodicities observed in the occurrence times of events recorded by the Apollo Passive Seismic Experiment. In addition, the typically large S wave to P wave arrival amplitude ratios observed on deep moonquake seismograms are indicative of shear failure. Tidal stress, induced in the lunar interior by the gravitational influence of the Earth, may influence moonquake activity. We investigate the relationship between tidal stress and deep moonquake occurrence by searching for a linear combination of the normal and shear components of tidal stress that best approximates a constant value when evaluated at the times of moonquakes from 39 different moonquake clusters. We perform a grid search at each cluster location, computing the stresses resolved onto a suite of possible failure planes, to obtain the best fitting fault orientation at each location. We find that while linear combinations of stresses (and in some cases stress rates) can fit moonquake occurrence at many clusters quite well; for other clusters, the fit is not strongly dependent on plane orientation. This suggests that deep moonquakes may occur in response to factors other than, or in addition to, tidal stress. Several of our inferences support the hypothesis that deep moonquakes might be related to transformational faulting, in which shear failure is induced by mineral phase changes at depth. The occurrence of this process would have important implications for the lunar interior. Copyright 2009 by the American Geophysical Union.

Method and apparatus for providing pulse pile-up correction in charge quantizing radiation detection systems

DOEpatents

Britton, Jr., Charles L.; Wintenberg, Alan L.

1993-01-01

A radiation detection method and system for continuously correcting the quantization of detected charge during pulse pile-up conditions. Charge pulses from a radiation detector responsive to the energy of detected radiation events are converted to voltage pulses of predetermined shape whose peak amplitudes are proportional to the quantity of charge of each corresponding detected event by means of a charge-sensitive preamplifier. These peak amplitudes are sampled and stored sequentially in accordance with their respective times of occurrence. Based on the stored peak amplitudes and times of occurrence, a correction factor is generated which represents the fraction of a previous pulses influence on a preceding pulse peak amplitude. This correction factor is subtracted from the following pulse amplitude in a summing amplifier whose output then represents the corrected charge quantity measurement.

Active Longitude and Solar Flare Occurrences

NASA Astrophysics Data System (ADS)

Gyenge, N.; Ludmány, A.; Baranyi, T.

2016-02-01

The aim of the present work is to specify the spatio-temporal characteristics of flare activity observed by the Reuven Ramaty High Energy Solar Spectroscopic Imager (RHESSI) and the Geostationary Operational Environmental Satellite (GOES) in connection with the behavior of the longitudinal domain of enhanced sunspot activity known as active longitude (AL). By using our method developed for this purpose, we identified the AL in every Carrington Rotation provided by the Debrecen Photoheliographic Data. The spatial probability of flare occurrence has been estimated depending on the longitudinal distance from AL in the northern and southern hemispheres separately. We have found that more than 60% of the RHESSI and GOES flares is located within +/- 36^\\circ from the AL. Hence, the most flare-productive active regions tend to be located in or close to the active longitudinal belt. This observed feature may allow for the prediction of the geo-effective position of the domain of enhanced flaring probability. Furthermore, we studied the temporal properties of flare occurrence near the AL and several significant fluctuations were found. More precisely, the results of the method are the following fluctuations: 0.8, 1.3, and 1.8 years. These temporal and spatial properties of the solar flare occurrence within the active longitudinal belts could provide us with an enhanced solar flare forecasting opportunity.

OCCURRENCE OF COLORECTAL ADENOMAS IN YOUNGER ADULTS: AN EPIDEMIOLOGIC NECROPSY STUDY

PubMed Central

Pendergrass, Cheryl J.; Edelstein, Daniel L.; Hylind, Linda M.; Phillips, Blaine T.; Iacobuzio-Donahue, Christine; Romans, Katharine; Griffin, Constance A.; Cruz-Correa, Marcia; Tersmette, Anne C.; Offerhaus, G. Johan A.; Giardiello, Francis M.

2009-01-01

Background and Aims The colorectal adenoma is the precursor lesion in virtually all colorectal cancers. Occurrence of colorectal adenomas has been studied in older adults but analysis in younger adults is lacking. Methods The prevalence by age, sex, race, and location, and the number of colorectal adenomas detected was investigated using epidemiologic necropsy in 3558 persons aged 20–89 autopsied from 1985 to 2004 at the Johns Hopkins Hospital. Results were standardized to the general population. Younger adults 20–49 years old were compared to older adults 50 to 89 years old. Results The prevalence of colorectal adenomas in younger adults increased from 1.72% to 3.59% from the 3rd to 5th decade of life and then sharply increased after age 50. In younger adults, adenomas were more prevalent in men than women (RR= 1.09, CI 1.07–1.11) and whites than blacks (RR=1.28, CI 1.26–1.31). Overall, both younger and older adults had predominately left-sided adenomas, but blacks in both age groups had more right-sided adenomas. Occurrence of two or more adenomas in younger adults and five or more in older adults was greater than 2 standard deviations from the mean. Conclusions Colorectal adenomas infrequently occur in younger adults and are more prevalent in the left colon. Irrespective of age, blacks have more right-sided adenomas suggesting need for screening the entire colorectum. Two or more adenomas in younger adults and five or more in older adults represents polyp burden outside the normal expectation. PMID:18558514

Spatial analysis of polybrominated diphenylethers (PBDEs) and polybrominated biphenyls (PBBs) in fish collected from UK and proximate marine waters.

PubMed

Zhihua, Li; Panton, S; Marshall, Lisa; Fernandes, A; Rose, M; Smith, F; Holmes, Mel

2018-03-01

Some commonly consumed marine fish species are considered to display a higher risk of bio-accumulating organic environmental contaminants such as PBDEs. As part of a study to investigate the spatial distribution of these contaminants, data on polybrominated diphenlyethers (PBDEs) and polybrominated biphenyls (PBBs) were collected and analysed by introducing a web-based resource which enables efficient spatial, species and concentration level representations. Furthermore, hierarchical cluster analyses permits correlations within the data to be predicted. The data provide current information on levels of PBDE and PBB occurrence, allowing identification of locations that show higher contaminant levels. 135 fish samples of various species were analysed from UK marine waters, but encompassing the waters around Norway in the North and to the Algarve in the South. PBDEs were observed in all samples with the majority of measured congeners being detected. The concentrations ranged from 0.087 μg/kg to 8.907 μg/kg whole weight (ww) for the sum of all measured PBDE congeners. PBBs occurred less frequently showing a corresponding range of <0.02 μg/kg to 0.97 μg/kg ww for the sum of seven PBB congeners. Concentrations vary depending on species and locations where landed, e.g. PBBs occurred more frequently and at higher levels in grey mullet from French waters. The high frequency of PBDE occurrence makes it prudent to continue the monitoring of these commonly consumed marine fish species. The web-based resource provides a flexible and efficient tool for assessors and policy-makers to monitor and evaluate levels within caught fish species improving evidenced-based decision processes. Copyright © 2017 Elsevier Ltd. All rights reserved.

Occurrence and distribution of organophosphorus flame retardants and plasticizers in anthropogenically affected groundwater.

PubMed

Regnery, J; Püttmann, W; Merz, C; Berthold, G

2011-02-01

Occurrence and distribution of chlorinated and non-chlorinated organophosphates in 72 groundwater samples from Germany under different recharge/infiltration conditions were investigated. Tris(2-chloro-1-methylethyl) phosphate (TCPP) and tris(2-chloroethyl) phosphate (TCEP) were the most frequently detected organophosphates in groundwater samples. Highest individual organophosphate concentrations (>0.1 µg L(-1)) were determined in groundwater polluted by infiltrating leachate and groundwater recharged via riverbank filtration of organophosphate-loaded recipients. In samples from springs and deep groundwater monitoring wells that are not affected by surface waters, organophosphate concentrations were mostly below the limit of detection. The occurrence (3-9 ng L(-1)) of TCPP and TCEP in samples from aquifers with groundwater ages between 20 and 45 years indicates the persistence of both compounds within the aquifer. At urban sites organophosphate-loaded precipitation, surface runoff, and leakage of wastewater influenced groundwater quality. For rural sites, where groundwater recharge is only influenced by precipitation, organophosphates were very rarely detectable in groundwater.

Risk analysis of analytical validations by probabilistic modification of FMEA.

PubMed

Barends, D M; Oldenhof, M T; Vredenbregt, M J; Nauta, M J

2012-05-01

Risk analysis is a valuable addition to validation of an analytical chemistry process, enabling not only detecting technical risks, but also risks related to human failures. Failure Mode and Effect Analysis (FMEA) can be applied, using a categorical risk scoring of the occurrence, detection and severity of failure modes, and calculating the Risk Priority Number (RPN) to select failure modes for correction. We propose a probabilistic modification of FMEA, replacing the categorical scoring of occurrence and detection by their estimated relative frequency and maintaining the categorical scoring of severity. In an example, the results of traditional FMEA of a Near Infrared (NIR) analytical procedure used for the screening of suspected counterfeited tablets are re-interpretated by this probabilistic modification of FMEA. Using this probabilistic modification of FMEA, the frequency of occurrence of undetected failure mode(s) can be estimated quantitatively, for each individual failure mode, for a set of failure modes, and the full analytical procedure. Copyright © 2012 Elsevier B.V. All rights reserved.

Dengue Fever Occurrence and Vector Detection by Larval Survey, Ovitrap and MosquiTRAP: A Space-Time Clusters Analysis

PubMed Central

de Melo, Diogo Portella Ornelas; Scherrer, Luciano Rios; Eiras, Álvaro Eduardo

2012-01-01

The use of vector surveillance tools for preventing dengue disease requires fine assessment of risk, in order to improve vector control activities. Nevertheless, the thresholds between vector detection and dengue fever occurrence are currently not well established. In Belo Horizonte (Minas Gerais, Brazil), dengue has been endemic for several years. From January 2007 to June 2008, the dengue vector Aedes (Stegomyia) aegypti was monitored by ovitrap, the sticky-trap MosquiTRAP™ and larval surveys in an study area in Belo Horizonte. Using a space-time scan for clusters detection implemented in SaTScan software, the vector presence recorded by the different monitoring methods was evaluated. Clusters of vectors and dengue fever were detected. It was verified that ovitrap and MosquiTRAP vector detection methods predicted dengue occurrence better than larval survey, both spatially and temporally. MosquiTRAP and ovitrap presented similar results of space-time intersections to dengue fever clusters. Nevertheless ovitrap clusters presented longer duration periods than MosquiTRAP ones, less acuratelly signalizing the dengue risk areas, since the detection of vector clusters during most of the study period was not necessarily correlated to dengue fever occurrence. It was verified that ovitrap clusters occurred more than 200 days (values ranged from 97.0±35.35 to 283.0±168.4 days) before dengue fever clusters, whereas MosquiTRAP clusters preceded dengue fever clusters by approximately 80 days (values ranged from 65.5±58.7 to 94.0±14. 3 days), the former showing to be more temporally precise. Thus, in the present cluster analysis study MosquiTRAP presented superior results for signaling dengue transmission risks both geographically and temporally. Since early detection is crucial for planning and deploying effective preventions, MosquiTRAP showed to be a reliable tool and this method provides groundwork for the development of even more precise tools. PMID:22848729

Modelling the occurrence of heat waves in maximum and minimum temperatures over Spain and projections for the period 2031-60

NASA Astrophysics Data System (ADS)

Abaurrea, J.; Asín, J.; Cebrián, A. C.

2018-02-01

The occurrence of extreme heat events in maximum and minimum daily temperatures is modelled using a non-homogeneous common Poisson shock process. It is applied to five Spanish locations, representative of the most common climates over the Iberian Peninsula. The model is based on an excess over threshold approach and distinguishes three types of extreme events: only in maximum temperature, only in minimum temperature and in both of them (simultaneous events). It takes into account the dependence between the occurrence of extreme events in both temperatures and its parameters are expressed as functions of time and temperature related covariates. The fitted models allow us to characterize the occurrence of extreme heat events and to compare their evolution in the different climates during the observed period. This model is also a useful tool for obtaining local projections of the occurrence rate of extreme heat events under climate change conditions, using the future downscaled temperature trajectories generated by Earth System Models. The projections for 2031-60 under scenarios RCP4.5, RCP6.0 and RCP8.5 are obtained and analysed using the trajectories from four earth system models which have successfully passed a preliminary control analysis. Different graphical tools and summary measures of the projected daily intensities are used to quantify the climate change on a local scale. A high increase in the occurrence of extreme heat events, mainly in July and August, is projected in all the locations, all types of event and in the three scenarios, although in 2051-60 the increase is higher under RCP8.5. However, relevant differences are found between the evolution in the different climates and the types of event, with a specially high increase in the simultaneous ones.

A review on cylindrospermopsin: The global occurrence, detection, toxicity and degradation of a potent cyanotoxin

EPA Science Inventory

Abstract: Cylindrospermopsin is now recognized as a potent cyanobacterial toxin found in water bodies worldwide. The ever-increasing and global occurrence of massive and prolonged blooms of cylindrospermopsin-producing cyanobacteria in freshwater poses a potential threat to both ...

Detection of stable community structures within gut microbiota co-occurrence networks from different human populations.

PubMed

Jackson, Matthew A; Bonder, Marc Jan; Kuncheva, Zhana; Zierer, Jonas; Fu, Jingyuan; Kurilshikov, Alexander; Wijmenga, Cisca; Zhernakova, Alexandra; Bell, Jordana T; Spector, Tim D; Steves, Claire J

2018-01-01

Microbes in the gut microbiome form sub-communities based on shared niche specialisations and specific interactions between individual taxa. The inter-microbial relationships that define these communities can be inferred from the co-occurrence of taxa across multiple samples. Here, we present an approach to identify comparable communities within different gut microbiota co-occurrence networks, and demonstrate its use by comparing the gut microbiota community structures of three geographically diverse populations. We combine gut microbiota profiles from 2,764 British, 1,023 Dutch, and 639 Israeli individuals, derive co-occurrence networks between their operational taxonomic units, and detect comparable communities within them. Comparing populations we find that community structure is significantly more similar between datasets than expected by chance. Mapping communities across the datasets, we also show that communities can have similar associations to host phenotypes in different populations. This study shows that the community structure within the gut microbiota is stable across populations, and describes a novel approach that facilitates comparative community-centric microbiome analyses.

Sensitivity and accuracy of DNA based methods used to describe aquatic communities for early detection of invasive fish species

EPA Science Inventory

For biomonitoring efforts aimed at early detection of aquatic invasive species (AIS), the ability to detect rare individuals is key and requires accurate species level identification to maintain a low occurrence probability of non-detection errors (failure to detect a present spe...

Statistical evaluation of variables affecting occurrence of hydrocarbons in aquifers used for public supply, California

USGS Publications Warehouse

Landon, Matthew K.; Burton, Carmen A.; Davis, Tracy A.; Belitz, Kenneth; Johnson, Tyler D.

2014-01-01

The variables affecting the occurrence of hydrocarbons in aquifers used for public supply in California were assessed based on statistical evaluation of three large statewide datasets; gasoline oxygenates also were analyzed for comparison with hydrocarbons. Benzene is the most frequently detected (1.7%) compound among 17 hydrocarbons analyzed at generally low concentrations (median detected concentration 0.024 μg/l) in groundwater used for public supply in California; methyl tert-butyl ether (MTBE) is the most frequently detected (5.8%) compound among seven oxygenates analyzed (median detected concentration 0.1 μg/l). At aquifer depths used for public supply, hydrocarbons and MTBE rarely co-occur and are generally related to different variables; in shallower groundwater, co-occurrence is more frequent and there are similar relations to the density or proximity of potential sources. Benzene concentrations are most strongly correlated with reducing conditions, regardless of groundwater age and depth. Multiple lines of evidence indicate that benzene and other hydrocarbons detected in old, deep, and/or brackish groundwater result from geogenic sources of oil and gas. However, in recently recharged (since ~1950), generally shallower groundwater, higher concentrations and detection frequencies of benzene and hydrocarbons were associated with a greater proportion of commercial land use surrounding the well, likely reflecting effects of anthropogenic sources, particularly in combination with reducing conditions.

Hydra—The National Earthquake Information Center’s 24/7 seismic monitoring, analysis, catalog production, quality analysis, and special studies tool suite

USGS Publications Warehouse

Patton, John M.; Guy, Michelle R.; Benz, Harley M.; Buland, Raymond P.; Erickson, Brian K.; Kragness, David S.

2016-08-18

This report provides an overview of the capabilities and design of Hydra, the global seismic monitoring and analysis system used for earthquake response and catalog production at the U.S. Geological Survey National Earthquake Information Center (NEIC). Hydra supports the NEIC’s worldwide earthquake monitoring mission in areas such as seismic event detection, seismic data insertion and storage, seismic data processing and analysis, and seismic data output.The Hydra system automatically identifies seismic phase arrival times and detects the occurrence of earthquakes in near-real time. The system integrates and inserts parametric and waveform seismic data into discrete events in a database for analysis. Hydra computes seismic event parameters, including locations, multiple magnitudes, moment tensors, and depth estimates. Hydra supports the NEIC’s 24/7 analyst staff with a suite of seismic analysis graphical user interfaces.In addition to the NEIC’s monitoring needs, the system supports the processing of aftershock and temporary deployment data, and supports the NEIC’s quality assurance procedures. The Hydra system continues to be developed to expand its seismic analysis and monitoring capabilities.

Audio gunshot detection and localization systems: History, basic design, and future possibilities

NASA Astrophysics Data System (ADS)

Graves, Jordan R.

For decades, law enforcement organizations have increasingly utilized audio detection and localization systems to identify potential gunshot incidents and to respond accordingly. These systems have grown from simple microphone configurations used to estimate location into complex arrays that seem to pinpoint gunfire to within mere feet of its actual occurrence. Such technology comes from a long and dynamic history of developing equipment dating back to the First World War. Additionally, though basic designs require little in terms of programming or engineering experience, the mere presence of this tool invokes a firestorm of debate amongst economists, law enforcement groups, and the general public, which leads to questions about future possibilities for its use. The following pages will retell the history of these systems from theoretical conception to current capabilities. This work will also dissect these systems to reveal fundamental elements of their inner workings, in order to build a basic demonstrative system. Finally, this work will discuss some legal and moral points of dissension, and will explore these systems’ roles in society now and in the future, in additional applications as well.

Multivariate statistical analysis strategy for multiple misfire detection in internal combustion engines

NASA Astrophysics Data System (ADS)

Hu, Chongqing; Li, Aihua; Zhao, Xingyang

2011-02-01

This paper proposes a multivariate statistical analysis approach to processing the instantaneous engine speed signal for the purpose of locating multiple misfire events in internal combustion engines. The state of each cylinder is described with a characteristic vector extracted from the instantaneous engine speed signal following a three-step procedure. These characteristic vectors are considered as the values of various procedure parameters of an engine cycle. Therefore, determination of occurrence of misfire events and identification of misfiring cylinders can be accomplished by a principal component analysis (PCA) based pattern recognition methodology. The proposed algorithm can be implemented easily in practice because the threshold can be defined adaptively without the information of operating conditions. Besides, the effect of torsional vibration on the engine speed waveform is interpreted as the presence of super powerful cylinder, which is also isolated by the algorithm. The misfiring cylinder and the super powerful cylinder are often adjacent in the firing sequence, thus missing detections and false alarms can be avoided effectively by checking the relationship between the cylinders.

Detection of human adenovirus, rotavirus and enterovirus in water samples collected on dairy farms from Tenente Portela, Northwest of Rio Grande do Sul, Brazil

PubMed Central

Spilki, Fernando Rosado; da Luz, Roger Bordin; Fabres, Rafael Bandeira; Soliman, Mayra Cristina; Kluge, Mariana; Fleck, Juliane Deise; Rodrigues, Manoela Tressoldi; Comerlato, Juliana; Cenci, Alexander; Cerva, Cristine; Dasso, Maurício Gautério; Roehe, Paulo Michel

2013-01-01

Viral gastroenteritis and other waterborne diseases are a major concern for health in Brazil. A number of studies were conducted about the presence of viruses on water samples from Brazilian areas. However, the knowledge about the occurrence of viral contamination of drinking water sources in rural settings of the country is insufficient. On the present work, 15 samples from 5 dairy farms located at the municipality of Tenente Portela were collected and analysed for the presence of human adenoviruses (HAdV), as well as human enteroviruses (EV) and rotaviruses (RV). HAdV was present on 66.66% of the water samples, and have been found in all samples from artesian wells and springs, which are used as sources of drinking water for the individuals inhabiting those farms. EV and RV found only in one sample each. The detection rates of HAdV on the water from these dairy farms are alarming and point towards a situation of elevated environmental contamination by fecal microorganisms of human origin and poor basic sanitation conditions. PMID:24516464

The LAMOST spectroscopic survey of stars in the Kepler field of view: Activity indicators and stellar parameters

NASA Astrophysics Data System (ADS)

Molenda-Żakowicz, Joanna; Frasca, Antonio; De Cat, Peter; Catanzaro, Giovanni

2017-09-01

We summarize the results of the completed first round of the LAMOST-Kepler project, and describe the status of its on-going second round. As a result of the first round of this project, the atmospheric parameters (Teff, log g, and [Fe/H]), the spectral classification (spectral type and luminosity class), and the radial velocities (RV) have been measured for 51,385 stars. For 4031 stars, we were able to measure the projected rotational velocity, while the minimum detectable v sin i was 120 km s-1. For 8821 stars with more than one observation, we computed the χ-square probability that the detected RV variations have a random occurrence. Finally, we classified 442 stars as chromospherically active on the basis of the analysis of their Hα and Ca II-IRT fluxes. All our results have been obtained from the low-resolution (R ˜ 1800) spectroscopic observations acquired with the LAMOST instrument. Based on observations collected with the Large Sky Area Multi-Object Fiber Spectroscopic Telescope (LAMOST) located at the Xinglong Observatory, China.

Detection of LSB+/-1 steganography based on co-occurrence matrix and bit plane clipping

NASA Astrophysics Data System (ADS)

Abolghasemi, Mojtaba; Aghaeinia, Hassan; Faez, Karim; Mehrabi, Mohammad Ali

2010-01-01

Spatial LSB+/-1 steganography changes smooth characteristics between adjoining pixels of the raw image. We present a novel steganalysis method for LSB+/-1 steganography based on feature vectors derived from the co-occurrence matrix in the spatial domain. We investigate how LSB+/-1 steganography affects the bit planes of an image and show that it changes more least significant bit (LSB) planes of it. The co-occurrence matrix is derived from an image in which some of its most significant bit planes are clipped. By this preprocessing, in addition to reducing the dimensions of the feature vector, the effects of embedding were also preserved. We compute the co-occurrence matrix in different directions and with different dependency and use the elements of the resulting co-occurrence matrix as features. This method is sensitive to the data embedding process. We use a Fisher linear discrimination (FLD) classifier and test our algorithm on different databases and embedding rates. We compare our scheme with the current LSB+/-1 steganalysis methods. It is shown that the proposed scheme outperforms the state-of-the-art methods in detecting the LSB+/-1 steganographic method for grayscale images.

Overview of MPLNET Version 3 Cloud Detection

NASA Technical Reports Server (NTRS)

Lewis, Jasper R.; Campbell, James; Welton, Ellsworth J.; Stewart, Sebastian A.; Haftings, Phillip

2016-01-01

The National Aeronautics and Space Administration Micro Pulse Lidar Network, version 3, cloud detection algorithm is described and differences relative to the previous version are highlighted. Clouds are identified from normalized level 1 signal profiles using two complementary methods. The first method considers vertical signal derivatives for detecting low-level clouds. The second method, which detects high-level clouds like cirrus, is based on signal uncertainties necessitated by the relatively low signal-to-noise ratio exhibited in the upper troposphere by eye-safe network instruments, especially during daytime. Furthermore, a multitemporal averaging scheme is used to improve cloud detection under conditions of a weak signal-to-noise ratio. Diurnal and seasonal cycles of cloud occurrence frequency based on one year of measurements at the Goddard Space Flight Center (Greenbelt, Maryland) site are compared for the new and previous versions. The largest differences, and perceived improvement, in detection occurs for high clouds (above 5 km, above MSL), which increase in occurrence by over 5%. There is also an increase in the detection of multilayered cloud profiles from 9% to 19%. Macrophysical properties and estimates of cloud optical depth are presented for a transparent cirrus dataset. However, the limit to which the cirrus cloud optical depth could be reliably estimated occurs between 0.5 and 0.8. A comparison using collocated CALIPSO measurements at the Goddard Space Flight Center and Singapore Micro Pulse Lidar Network (MPLNET) sites indicates improvements in cloud occurrence frequencies and layer heights.

Power of sign surveys to monitor population trend

USGS Publications Warehouse

Kendall, Katherine C.; Metzgar, Lee H.; Patterson, David A.; Steele, Brian M.

1992-01-01

The urgent need for an effective monitoring scheme for grizzly bear (Ursus arctos) populations led us to investigate the effort required to detect changes in populations of low—density dispersed animals, using sign (mainly scats and tracks) they leave on trails. We surveyed trails in Glacier National Park for bear tracks and scats during five consecutive years. Using these data, we modeled the occurrence of bear sign on trails, then estimated the power of various sampling schemes. Specifically, we explored the power of bear sign surveys to detect a 20% decline in sign occurrence. Realistic sampling schemes appear feasible if the density of sign is high enough, and we provide guidelines for designs with adequate replication to monitor long—term trends of dispersed populations using sign occurrences on trails.

Spatial Heterogeneity of Habitat Suitability for Rift Valley Fever Occurrence in Tanzania: An Ecological Niche Modelling Approach

PubMed Central

Sindato, Calvin; Stevens, Kim B.; Karimuribo, Esron D.; Mboera, Leonard E. G.; Paweska, Janusz T.; Pfeiffer, Dirk U.

2016-01-01

Background Despite the long history of Rift Valley fever (RVF) in Tanzania, extent of its suitable habitat in the country remains unclear. In this study we investigated potential effects of temperature, precipitation, elevation, soil type, livestock density, rainfall pattern, proximity to wild animals, protected areas and forest on the habitat suitability for RVF occurrence in Tanzania. Materials and Methods Presence-only records of 193 RVF outbreak locations from 1930 to 2007 together with potential predictor variables were used to model and map the suitable habitats for RVF occurrence using ecological niche modelling. Ground-truthing of the model outputs was conducted by comparing the levels of RVF virus specific antibodies in cattle, sheep and goats sampled from locations in Tanzania that presented different predicted habitat suitability values. Principal Findings Habitat suitability values for RVF occurrence were higher in the northern and central-eastern regions of Tanzania than the rest of the regions in the country. Soil type and precipitation of the wettest quarter contributed equally to habitat suitability (32.4% each), followed by livestock density (25.9%) and rainfall pattern (9.3%). Ground-truthing of model outputs revealed that the odds of an animal being seropositive for RVFV when sampled from areas predicted to be most suitable for RVF occurrence were twice the odds of an animal sampled from areas least suitable for RVF occurrence (95% CI: 1.43, 2.76, p < 0.001). Conclusion/Significance The regions in the northern and central-eastern Tanzania were more suitable for RVF occurrence than the rest of the regions in the country. The modelled suitable habitat is characterised by impermeable soils, moderate precipitation in the wettest quarter, high livestock density and a bimodal rainfall pattern. The findings of this study should provide guidance for the design of appropriate RVF surveillance, prevention and control strategies which target areas with these characteristics. PMID:27654268

Microplastic-associated Bacterial Assemblages in the Intertidal Zone

NASA Astrophysics Data System (ADS)

Jiang, P.; Zhao, S.; Zhu, L.; Li, D.

2017-12-01

Plastic debris is posing a planetary-scale threat. As a zone where terrestrial and marine ecosystems interactions occur, the accumulation of plastic marine debris (PMD) in intertidal environments has been well documented. But the information of plastic-associated microbial community (the "Plastisphere") in the intertidal zone is scanty. Utilizing the high-throughput sequencing, we profiled the bacterial communities attached to microplastic samples from the intertidal locations around Yangtze estuary. The structure and composition of Plastisphere communities in current study varied significantly with geographical stations. The taxonomic composition on microplastic samples implied their sedimental and aquatic origins. Some members of hydrocarbon degrading microorganisms and potential pathogens were detected on microplastic. Overall, our findings fuel the evidence for the occurrence of diverse microbial assemblages on PMD and improving our understanding of Plastisphere ecology, which could support the management action and policy change related to PMD.

Rip current evidence by hydrodynamic simulations, bathymetric surveys and UAV observation

NASA Astrophysics Data System (ADS)

Benassai, Guido; Aucelli, Pietro; Budillon, Giorgio; De Stefano, Massimo; Di Luccio, Diana; Di Paola, Gianluigi; Montella, Raffaele; Mucerino, Luigi; Sica, Mario; Pennetta, Micla

2017-09-01

The prediction of the formation, spacing and location of rip currents is a scientific challenge that can be achieved by means of different complementary methods. In this paper the analysis of numerical and experimental data, including RPAS (remotely piloted aircraft systems) observations, allowed us to detect the presence of rip currents and rip channels at the mouth of Sele River, in the Gulf of Salerno, southern Italy. The dataset used to analyze these phenomena consisted of two different bathymetric surveys, a detailed sediment analysis and a set of high-resolution wave numerical simulations, completed with Google EarthTM images and RPAS observations. The grain size trend analysis and the numerical simulations allowed us to identify the rip current occurrence, forced by topographically constrained channels incised on the seabed, which were compared with observations.

Venezuelan Caribbean Sea under the threat of TBT.

PubMed

Paz-Villarraga, César Augusto; Castro, Ítalo B; Miloslavich, Patricia; Fillmann, Gilberto

2015-01-01

Although environmental tributyltin (TBT) contamination is considered a solved problem, imposex occurrence in Plicopurpura patula as well as butyltins (BTs) contamination in sediments and tissues were detected along 700 km of the Caribbean coastal shore. Areas under the influence of five main ports of Venezuela were covered, as well as large marinas and sites located away from expected sources. Marinas were the most contaminated areas, whilst imposex incidence and TBT levels were relatively low in areas nearby commercial harbors. Thus, it is evident that marinas have become the main source of fresh TBT to the region. This might explain why imposex incidence seems to be widely distributed along the Venezuelan coast, since leisure boats are circulating along the whole coastal region. In fact, this could be the pattern for other areas of the Caribbean Sea. Copyright © 2014 Elsevier Ltd. All rights reserved.

Disulfide Bond Formation and Activation of Escherichia coli β-Galactosidase under Oxidizing Conditions

PubMed Central

Seras-Franzoso, Joaquin; Affentranger, Roman; Ferrer-Navarro, Mario; Daura, Xavier; Villaverde, Antonio

2012-01-01

Escherichia coli β-galactosidase is probably the most widely used reporter enzyme in molecular biology, cell biology, and biotechnology because of the easy detection of its activity. Its large size and tetrameric structure make this bacterial protein an interesting model for crystallographic studies and atomic mapping. In the present study, we investigate a version of Escherichia coli β-galactosidase produced under oxidizing conditions, in the cytoplasm of an Origami strain. Our data prove the activation of this microbial enzyme under oxidizing conditions and clearly show the occurrence of a disulfide bond in the β-galactosidase structure. Additionally, the formation of this disulfide bond is supported by the analysis of a homology model of the protein that indicates that two cysteines located in the vicinity of the catalytic center are sufficiently close for disulfide bond formation. PMID:22286993

Aftershock seismicity of the 2010 Maule Mw=8.8 Chile, earthquake: Correlation between co-seismic slip models and aftershock distribution?

USGS Publications Warehouse

Rietbrock, A.; Ryder, I.; Hayes, G.; Haberland, C.; Comte, D.; Roecker, S.

2012-01-01

The 27 February 2010 Maule, Chile (Mw=8.8) earthquake is one of the best instrumentally observed subduction zone megathrust events. Here we present locations, magnitudes and cumulative equivalent moment of the first -2 months of aftershocks, recorded on a temporary network deployed within 2 weeks of the occurrence of the mainshock. Using automatically-determined onset times and a back projection approach for event association, we are able to detect over 30,000 events in the time period analyzed. To further increase the location accuracy, we systematically searched for potential S-wave arrivals and events were located in a regional 2D velocity model. Additionally, we calculated regional moment tensors to gain insight into the deformation history of the aftershock sequence. We find that the aftershock seismicity is concentrated between 40 and 140 km distance from the trench over a depth range of 10 to 35 km. Focal mechanisms indicate a predominance of thrust faulting, with occasional normal faulting events. Increased activity is seen in the outer-rise region of the Nazca plate, predominantly in the northern part of the rupture area. Further down-dip, a second band of clustered seismicity, showing mainly thrust motion, is located at depths of 40–45 km. By comparing recent published mainshock source inversions with our aftershock distribution, we discriminate slip models based on the assumption that aftershocks occur in areas of rapid transition between high and low slip, surrounding high-slip regions of the mainshock.

Wireless LAN security management with location detection capability in hospitals.

PubMed

Tanaka, K; Atarashi, H; Yamaguchi, I; Watanabe, H; Yamamoto, R; Ohe, K

2012-01-01

In medical institutions, unauthorized access points and terminals obstruct the stable operation of a large-scale wireless local area network (LAN) system. By establishing a real-time monitoring method to detect such unauthorized wireless devices, we can improve the efficiency of security management. We detected unauthorized wireless devices by using a centralized wireless LAN system and a location detection system at 370 access points at the University of Tokyo Hospital. By storing the detected radio signal strength and location information in a database, we evaluated the risk level from the detection history. We also evaluated the location detection performance in our hospital ward using Wi-Fi tags. The presence of electric waves outside the hospital and those emitted from portable game machines with wireless communication capability was confirmed from the detection result. The location detection performance showed an error margin of approximately 4 m in detection accuracy and approximately 5% in false detection. Therefore, it was effective to consider the radio signal strength as both an index of likelihood at the detection location and an index for the level of risk. We determined the location of wireless devices with high accuracy by filtering the detection results on the basis of radio signal strength and detection history. Results of this study showed that it would be effective to use the developed location database containing radio signal strength and detection history for security management of wireless LAN systems and more general-purpose location detection applications.

Prevalence of Taurodont molars in a North Indian population.

PubMed

Bharti, Ramesh; Chandra, Anil; Tikku, Aseem Prakash; Arya, Deeksha

2015-01-01

It is very important for dentists to be familiar with anomalies of teeth not only for the clinical complications but also their management. Taurodontism also provides a valuable clue in detecting its association with various syndromes and other systemic conditions. The purpose of this study was to assess the prevalence of Taurodont molars among a North Indian population. A total of 1000 patients' full-mouth periapical radiographs were screened. The radiographs were evaluated under optimal conditions using double magnifying glasses. A total of 7615 molars (including third molars) were evaluated. The relative incidence and the correlations regarding the location of Taurodont teeth (right versus left side and maxillary versus mandibular) were analyzed using the Chi-square test. Twenty-eight patients were found to have a Taurodont molar (11 women and 17 men [P = 0.250]). The prevalence of Taurodont molar was 2.8%. Males had a higher prevalence rate than females (3.4% vs. 2.2%, respectively). A cluster analysis of total Taurodonts in the mandible (45%) versus maxilla (55%) of both males and females combined showed a statistically significant difference (P < 0.05). The occurrence of Taurodontism is basically based on racial expression in different populations. These variations in prevalence between different populations may be due to ethnic variations. The occurrence of Taurodont molars among this Indian population was rare.

Climatology and Impact of Polar Lows in the North Atlantic: Present and Future

NASA Astrophysics Data System (ADS)

Michel, Clio; Haukeland, Magnus; Spengler, Thomas

2016-04-01

Polar lows are maritime cyclones occurring during cold air outbreaks in high latitudes. We use the Melbourne University algorithm to detect and track polar lows in the North Atlantic. The algorithm is applied to ERA-Interim reanalyses as well as high resolution (25 and 50 km) global climate model data from GFDL for present and future climates. Cyclone track densities for the GFDL present climate and the ERA-Interim reanalyses compare well for the occurrence of present day polar lows. We also present cyclone track densities for future climates under RCP4.5 and RCP8.5 for the early and late 21st century. Polar lows mainly form close to Svalbard but also along the coast of Greenland, in the Norwegian Sea and Barents Sea. We present the shifts in location and intensity of polar lows for future climates and discuss potential reasons for these changes. During their lifetime, they travel several 100 kilometres and can reach the Norwegian coast as well as off-shore infrastructures. Therefore we also assess the difference between current and future occurrence of polar lows reaching the coast of Norway as well as areas with oil platforms and active fisheries. This analysis pinpoints the exposure to current and future impacts of polar lows on these socio-economic assets.

Spatiotemporal Dynamics of Total Viable Vibrio spp. in a NW Mediterranean Coastal Area.

PubMed

Girard, Léa; Peuchet, Sébastien; Servais, Pierre; Henry, Annabelle; Charni-Ben-Tabassi, Nadine; Baudart, Julia

2017-09-27

A cellular approach combining Direct Viable Counting and Fluorescent In Situ Hybridization using a one-step multiple-probe technique and Solid Phase Cytometry (DVC-FISH-SPC) was developed to monitor total viable vibrios and cover the detection of a large diversity of vibrios. FISH combined three probes in the same assay and targeted sequences located at different positions on the 16S rRNA of Vibrio and Aliivibrio members. We performed a 10-month in situ study to investigate the weekly dynamics of viable vibrios relative to culturable counts at two northwestern Mediterranean coastal sites, and identified the key physicochemical factors for their occurrence in water using a multivariate analysis. Total viable and culturable cell counts showed the same temporal pattern during the warmer season, whereas the ratios between both methods were inverted during the colder seasons (<15°C), indicating that some of the vibrio community had entered into a viable but non-culturable (VBNC) state. We confirmed that Seawater Surface Temperature explained 51-62% of the total variance in culturable counts, and also showed that the occurrence of viable vibrios is controlled by two variables, pheopigment (15%) and phosphate (12%) concentrations, suggesting that other unidentified factors play a role in maintaining viability.

Humpback whale (Megaptera novaeangliae) song occurrence at American Samoa in long-term passive acoustic recordings, 2008-2009.

PubMed

Munger, Lisa M; Lammers, Marc O; Fisher-Pool, Pollyanna; Wong, Kevin

2012-10-01

Humpback whales (Megaptera novaeangliae) wintering in American Samoan waters belong to the endangered Oceania subpopulation (IUCN Red List), but survey effort in this region has been relatively limited. Humpback whale seasonal occurrence was assessed using long-term passive acoustic recordings from March 2008 to July 2009 at Tutuila, the most populous island of American Samoa, and October 2008 to September 2009 at the remote Rose Atoll, 240 km to the east. Humpback whale song occurred from mid-July through November at both locations. For days with song, the mean number of recordings per day with song was significantly greater at Tutuila than at Rose Atoll. Song incidence at Rose Atoll peaked at 82% of recordings/day in late September 2008, and at Tutuila 70-100% of recordings contained song in late August through early September 2009, when recording ceased. Song incidence at Rose Atoll decreased at midday and increased at midnight, whereas there was no significant diurnal pattern at Tutuila. The lower overall incidence of song and its episodic nature at Rose Atoll suggest lower densities of whales traveling through the likely smaller detection area there, whereas greater song incidence and longer peak periods at Tutuila suggest greater whale densities and longer residence times.

L-band nighttime scintillations at the northern edge of the EIA along 95°E during the ascending half of the solar cycle 24

NASA Astrophysics Data System (ADS)

Dutta, Barsha; Kalita, Bitap Raj; Bhuyan, Pradip Kumar

2018-04-01

The characteristics of nighttime ionospheric scintillations measured at the L-band frequency of 1.575 GHz over Dibrugarh (27.5°N, 95°E, MLAT ∼ 17°N, 43° dip) during the ascending half of the solar cycle 24 from 2010 to 2014 have been investigated and the results are presented in this paper. The measurement location is within or outside the zone of influence of the equatorial ionization anomaly depending on solar and geomagnetic activity. Maximum scintillation is observed in the equinoxes irrespective of solar activity with clear asymmetry between March and September. The occurrence frequency in the solstices shifts from minimum in the June solstice in low solar activity to a minimum in the December solstice in high solar activity years. A significant positive correlation of occurrence of scintillations in the June solstice with solar activity has been observed. However, earlier reports from the Indian zone (∼75°E) indicate negative or no correlation of scintillation in June solstice with solar activity. Scintillations activity/occurrence in solstices indicates a clear positive correlation with Es recorded simultaneously by a collocated Ionosonde. In equinoxes, maximum scintillations occur in the pre-midnight hours while in solstices the occurrence frequency peaks just after sunset. The incidence of strong scintillations (S4 ≥ 0.4) increases with increase in solar activity. Strong (S4 ≥ 0.4) ionospheric scintillations accompanied by TEC depletions in the pre-midnight period is attributed to equatorial irregularities whereas the dusk period scintillations are related to the sporadic-E activity. Present results thus indicate that the current location at the northern edge of the EIA behaves as low as well as mid-latitude location.

Long-Term Occupancy Trends in a Data-Poor Dugong Population in the Andaman and Nicobar Archipelago

PubMed Central

D’Souza, Elrika; Patankar, Vardhan; Arthur, Rohan; Alcoverro, Teresa; Kelkar, Nachiket

2013-01-01

Prioritizing efforts for conserving rare and threatened species with limited past data and lacking population estimates is predicated on robust assessments of their occupancy rates. This is particularly challenging for elusive, long-lived and wide-ranging marine mammals. In this paper we estimate trends in long-term (over 50years) occupancy, persistence and extinction of a vulnerable and data-poor dugong (Dugong dugon) population across multiple seagrass meadows in the Andaman and Nicobar archipelago (India). For this we use hierarchical Bayesian dynamic occupancy models accounting for false negatives (detection probability<1), persistence and extinction, to two datasets: a) fragmentary long-term occurrence records from multiple sources (1959–2004, n = 40 locations), and b) systematic detection/non-detection data from current surveys (2010–2012, n = 57). Dugong occupancy across the archipelago declined by 60% (from 0.45 to 0.18) over the last 20 years and present distribution was largely restricted to sheltered bays and channels with seagrass meadows dominated by Halophila and Halodule sp. Dugongs were not found in patchy meadows with low seagrass cover. In general, seagrass habitat availability was not limiting for dugong occupancy, suggesting that anthropogenic factors such as entanglement in gillnets and direct hunting may have led to local extinction of dugongs from locations where extensive seagrass meadows still thrive. Effective management of these remnant dugong populations will require a multi-pronged approach, involving 1) protection of areas where dugongs still persist, 2) monitoring of seagrass habitats that dugongs could recolonize, 3) reducing gillnet use in areas used by dugongs, and 4) engaging with indigenous/settler communities to reduce impacts of hunting. PMID:24143180

Experimental validation of a damage detection approach on a full-scale highway sign support truss

NASA Astrophysics Data System (ADS)

Yan, Guirong; Dyke, Shirley J.; Irfanoglu, Ayhan

2012-04-01

Highway sign support structures enhance traffic safety by allowing messages to be delivered to motorists related to directions and warning of hazards ahead, and facilitating the monitoring of traffic speed and flow. These structures are exposed to adverse environmental conditions while in service. Strong wind and vibration accelerate their deterioration. Typical damage to this type of structure includes local fatigue fractures and partial loosening of bolted connections. The occurrence of these types of damage can lead to a failure in large portions of the structure, jeopardizing the safety of passing traffic. Therefore, it is important to have effective damage detection approaches to ensure the integrity of these structures. In this study, an extension of the Angle-between-String-and-Horizon (ASH) flexibility-based approach [32] is applied to locate damage in sign support truss structures at bay level. Ambient excitations (e.g. wind) can be considered as a significant source of vibration in these structures. Considering that ambient excitation is immeasurable, a pseudo ASH flexibility matrix constructed from output-only derived operational deflection shapes is proposed. A damage detection method based on the use of pseudo flexibility matrices is proposed to address several of the challenges posed in real-world applications. Tests are conducted on a 17.5-m long full-scale sign support truss structure to validate the effectiveness of the proposed method. Damage cases associated with loosened bolts and weld failures are considered. These cases are realistic for this type of structure. The results successfully demonstrate the efficacy of the proposed method to locate the two common forms of damage on sign support truss structures instrumented with a few accelerometers.

Occurrence and fate of emerging trace organic chemicals in wastewater plants in Chennai, India.

PubMed

Anumol, Tarun; Vijayanandan, Arya; Park, Minkyu; Philip, Ligy; Snyder, Shane A

2016-01-01

The presence of pharmaceuticals, hormones, pesticides and industrial contaminants collectively termed as trace organic compounds (TOrCs) in wastewater has been well-documented in USA, Europe, China and other regions. However, data from India, the second most populous country in the world is severely lacking. This study investigated the occurrence and concentrations of twenty-two indicator TOrCs at three wastewater treatment plants (WWTPs) in South India serving diverse communities across three sampling campaigns. Samples were collected after each WWTP treatment unit and removal efficiencies for TOrCs were determined. Eleven TOrCs were detected in every sample from every location at all sites, while only five TOrCs were detected consistently in effluent samples. Caffeine was present at greatest concentration in the influent of all three plants with average concentrations ranging between 56 and 65μg/L. In contrast, the x-ray contrast media pharmaceutical, iohexol, was the highest detected compound on average in the effluent at all three WWTPs (2.1-8.7μg/L). TOrCs were not completely removed in the WWTPs with removal efficiencies being compound specific and most of the attenuation being attributed to the biological treatment processes. Caffeine and triclocarban were well removed (>80%), while other compounds were poorly removed (acesulfame, sucralose, iohexol) or maybe even formed (carbamazepine) within the WWTPs. The effluent composition of the 22 TOrCs were similar within the three WWTPs but quite different to those seen in the US, indicating the importance of region-specific monitoring. Diurnal trends indicated that variability is compound specific but trended within certain classes of compounds (artificial sweeteners, and pharmaceuticals). The data collected on TOrCs from this study can be used as a baseline to identify potential remediation and regulatory strategies in this understudied region of India. Copyright © 2016 Elsevier Ltd. All rights reserved.

Effects of different drying treatments on fungal population and ochratoxin A occurrence in sultana type grapes.

PubMed

Şen, Levent; Ocak, İjlal; Nas, Sebahattin; Şevik, Ramazan

2016-09-01

This study aimed to determine the changes in mould and ochratoxin A (OTA) occurrence in sultanas under three different conventional drying conditions. Five different vineyards were chosen, and the three different treatments were applied to these grapes while drying. At the end of the drying process, total mould and black aspergilli (BA) populations in the samples varied from 2.45 to 5.61 log colony-forming units (CFU) g(-)(1) and from 0 to 4.92 log CFU g(-)(1), respectively. Significant increases (p < 0.05) occurred in mould loads depending on the extending drying period. However, independent of vineyard location, all the samples treated with cold dipping solution showed the lowest fungal loads. These results indicate that dipping solution treatment was the most effective drying method to minimise fungal infection of grapes. The expected results could not be achieved by drying grapes artificially contaminated with ochratoxigenic Aspergillus carbonarius spores. Seventy-one of 96 isolates (73.95%) obtained during drying were Aspergillus spp., and the remaining (n = 25, 26.05%) belonged to other genera, such as Penicillium, Trichoderma and Cladosporium. Grape juice-based agar medium was used to determine the realistic OTA production capacities of the isolated mould strains. The highest OTA production capacities were 809.70 ± 9.19, 87.58 ± 16.89 and 45.44 ± 18.78 ng g(-1) in 50% grape juice agar (GJ50), all five of which were from A. niger isolates. OTA was not present in any sample during the drying period; however, OTA was detected in two samples at 0.32 ± 0.15 and 0.52 ± 0.36 µg kg(-)(1) after the end of the drying process. The limit of detection (LOD) and limit of quantitation (LOQ) of the method used for detecting OTA in samples were 0.1 and 0.3 µg kg(-)(1), respectively.

Streamflow characteristics at streamgages in northern Afghanistan and selected locations

USGS Publications Warehouse

Olson, Scott A.; Williams-Sether, Tara

2010-01-01

Statistical summaries of streamflow data for 79 historical streamgages in Northern Afghanistan and other selected historical streamgages are presented in this report. The summaries for each streamgage include (1) station description, (2) graph of the annual mean discharge for the period of record, (3) statistics of monthly and annual mean discharges, (4) monthly and annual flow duration, (5) probability of occurrence of annual high discharges, (6) probability of occurrence of annual low discharges, (7) probability of occurrence of seasonal low discharges, (8) annual peak discharges for the period of record, and (9) monthly and annual mean discharges for the period of record.

Diurnal Human Activity and Introduced Species Affect Occurrence of Carnivores in a Human-Dominated Landscape.

PubMed

Moreira-Arce, Dario; Vergara, Pablo M; Boutin, Stan

2015-01-01

Diurnal human activity and domestic dogs in agro-forestry mosaics should theoretically modify the diurnal habitat use patterns of native carnivores, with these effects being scale-dependent. We combined intensive camera trapping data with Bayesian occurrence probability models to evaluate both diurnal and nocturnal patterns of space use by carnivores in a mosaic of land-use types in southern Chile. A total of eight carnivores species were recorded, including human-introduced dogs. During the day the most frequently detected species were the culpeo fox and the cougar. Conversely, during the night, the kodkod and chilla fox were the most detected species. The best supported models showed that native carnivores responded differently to landscape attributes and dogs depending on both the time of day as well as the spatial scale of landscape attributes. The positive effect of native forest cover at 250 m and 500 m radius buffers was stronger during the night for the Darwin's fox and cougar. Road density at 250 m scale negatively affected the diurnal occurrence of Darwin´s fox, whereas at 500 m scale roads had a stronger negative effect on the diurnal occurrence of Darwin´s foxes and cougars. A positive effect of road density on dog occurrence was evidenced during both night and day. Patch size had a positive effect on cougar occurrence during night whereas it affected negatively the occurrence of culpeo foxes and skunks during day. Dog occurrence had a negative effect on Darwin's fox occurrence during day-time and night-time, whereas its negative effect on the occurrence of cougar was evidenced only during day-time. Carnivore occurrences were not influenced by the proximity to a conservation area. Our results provided support for the hypothesis that diurnal changes to carnivore occurrence were associated with human and dog activity. Landscape planning in our study area should be focused in reducing both the levels of diurnal human activity in native forest remnants and the dispersion rates of dogs into these habitats.

Diurnal Human Activity and Introduced Species Affect Occurrence of Carnivores in a Human-Dominated Landscape

PubMed Central

Moreira-Arce, Dario; Vergara, Pablo M.; Boutin, Stan

2015-01-01

Diurnal human activity and domestic dogs in agro-forestry mosaics should theoretically modify the diurnal habitat use patterns of native carnivores, with these effects being scale-dependent. We combined intensive camera trapping data with Bayesian occurrence probability models to evaluate both diurnal and nocturnal patterns of space use by carnivores in a mosaic of land-use types in southern Chile. A total of eight carnivores species were recorded, including human-introduced dogs. During the day the most frequently detected species were the culpeo fox and the cougar. Conversely, during the night, the kodkod and chilla fox were the most detected species. The best supported models showed that native carnivores responded differently to landscape attributes and dogs depending on both the time of day as well as the spatial scale of landscape attributes. The positive effect of native forest cover at 250m and 500 m radius buffers was stronger during the night for the Darwin's fox and cougar. Road density at 250m scale negatively affected the diurnal occurrence of Darwin´s fox, whereas at 500m scale roads had a stronger negative effect on the diurnal occurrence of Darwin´s foxes and cougars. A positive effect of road density on dog occurrence was evidenced during both night and day. Patch size had a positive effect on cougar occurrence during night whereas it affected negatively the occurrence of culpeo foxes and skunks during day. Dog occurrence had a negative effect on Darwin's fox occurrence during day-time and night-time, whereas its negative effect on the occurrence of cougar was evidenced only during day-time. Carnivore occurrences were not influenced by the proximity to a conservation area. Our results provided support for the hypothesis that diurnal changes to carnivore occurrence were associated with human and dog activity. Landscape planning in our study area should be focused in reducing both the levels of diurnal human activity in native forest remnants and the dispersion rates of dogs into these habitats. PMID:26368395

Kepler Planet Detection Metrics: Per-Target Detection Contours for Data Release 25

NASA Technical Reports Server (NTRS)

Burke, Christopher J.; Catanzarite, Joseph

2017-01-01

A necessary input to planet occurrence calculations is an accurate model for the pipeline completeness (Burke et al., 2015). This document describes the use of the Kepler planet occurrence rate products in order to calculate a per-target detection contour for the measured Data Release 25 (DR25) pipeline performance. A per-target detection contour measures for a given combination of orbital period, Porb, and planet radius, Rp, what fraction of transit signals are recoverable by the Kepler pipeline (Twicken et al., 2016; Jenkins et al., 2017). The steps for calculating a detection contour follow the procedure outlined in Burke et al. (2015), but have been updated to provide improved accuracy enabled by the substantially larger database of transit injection and recovery tests that were performed on the final version (i.e., SOC 9.3) of the Kepler pipeline (Christiansen, 2017; Burke Catanzarite, 2017a). In the following sections, we describe the main inputs to the per-target detection contour and provide a worked example of the python software released with this document (Kepler Planet Occurrence Rate Tools KeplerPORTs)1 that illustrates the generation of a detection contour in practice. As background material for this document and its nomenclature, we recommend the reader be familiar with the previous method of calculating a detection contour (Section 2 of Burke et al.,2015), input parameters relevant for describing the data quantity and quality of Kepler targets (Burke Catanzarite, 2017b), and the extensive new transit injection and recovery tests of the Kepler pipeline (Christiansen et al., 2016; Burke Catanzarite, 2017a; Christiansen, 2017).

Spontaneous Recovery of Human Spatial Memory in a Virtual Water Maze

ERIC Educational Resources Information Center

Luna, David; Martínez, Héctor

2015-01-01

The occurrence of spontaneous recovery in human spatial memory was assessed using a virtual environment. In Experiment 1, spatial memory was established by training participants to locate a hidden platform in a virtual water maze using a set of four distal landmarks. In Experiment 2, after learning about the location of a hidden platform, the…

Spatial controls of occurrence and spread of wildfires in the Missouri Ozark Highlands

Treesearch

Jian Yang; Hong S. He; Stephen R. Shifley

2008-01-01

Understanding spatial controls on wildfires is important when designing adaptive fire management plans and optimizing fuel treatment locations on a forest landscape. Previous research about this topic focused primarily on spatial controls for fire origin locations alone. Fire spread and behavior were largely overlooked. This paper contrasts the relative importance of...

Long-Range Forecasting in Support of Operations in Pakistan

DTIC Science & Technology

2011-03-01

climate variation, respectively. ....... 11 Table 2. Schematic contingency table used to verify hindcasts of Jul-Aug Pakistan PR. The cells of the table...IRI is a component of Columbia University located in Palisades , NY. IRI’s mission is to increase society’s awareness of the impact of climate on...Jul-Aug Pakistan PR. The cells of the table represent the number and combinations of observed occurrences (obs Y), observed non- occurrences (obs N

A study of multi-GNSS ionospheric scintillation and cycle-slip over Hong Kong region for moderate solar flux conditions

NASA Astrophysics Data System (ADS)

Luo, Xiaomin; Liu, Zhizhao; Lou, Yidong; Gu, Shengfeng; Chen, Biyan

2017-09-01

This study presents the characteristics of Multiple Global Navigation Satellite System (Multi-GNSS) ionospheric scintillation and cycle-slip occurrence through the analysis of Multi-GNSS data collected by a newly installed receiver located at Sha Tin of Hong Kong from 6 October 2015 to 31 December 2016. This period of time was under a moderate solar activity condition with average sunspot number and F10.7 as 44 and 92, respectively. Considering the frequent occurrence of loss of lock in satellites measurements in the presence of ionospheric scintillation, a rate of geometry-free (ROGF) combination is proposed to take the time gap size between two data arcs into account in the cycle-slip detection. The results show that most ionospheric scintillation events and cycle-slips are observed from 20:00 LT to 0:00 LT. Under the strong scintillation (S4 > 0.6) conditions, it is found that the time series of wide-land (WL) ambiguity NWL and ROGF vary significantly and their range can reach more than 50 cycles and 0.1 m/s, respectively. However, the variations of the NWL and ROGF are generally small under weak scintillation (0.2 < S4 ≤ 0.6) or non-scintillation (S4 ≤ 0.2) conditions. A strong correlation of scintillation and cycle-slip occurrence is also verified by the daily and spatial statistics results. In addition, it is found that on average every 1000 strong scintillation events can result in 200, 124, and 171 cycle-slip occurrences in GPS, GLONASS, and BDS, respectively, whereas these values are 7, 12, and 12 per 1000 under weak scintillation conditions. This study suggests that cautions be taken when GNSS measurements are contaminated by the strong ionospheric scintillation in GNSS applications such as real-time kinematic (RTK) and precise point positioning (PPP).

Relation of contaminants to fish intersex in riverine sport fishes.

PubMed

Grieshaber, Casey A; Penland, Tiffany N; Kwak, Thomas J; Cope, W Gregory; Heise, Ryan J; Law, J Mac; Shea, Damian; Aday, D Derek; Rice, James A; Kullman, Seth W

2018-06-20

Endocrine active compounds (EACs) are pollutants that have been recognized as an emerging and widespread threat to aquatic ecosystems globally. Intersex, the presence of female germ cells within a predominantly male gonad, is considered a biomarker of endocrine disruption caused by EACs. We measured a suite of EACs and assessed their associated impacts on fish intersex occurrence and severity in a large, regulated river system in North Carolina and South Carolina, USA. Our specific objective was to determine the relationship of contaminants in water, sediment, and fish tissue with the occurrence and severity of the intersex condition in wild, adult black bass (Micropterus), sunfish (Lepomis), and catfish (Ictaluridae) species at 11 sites located on the Yadkin-Pee Dee River. Polycyclic aromatic hydrocarbons (PAHs), ethinylestradiol (EE2), and heavy metals were the most prevalent contaminants that exceeded effect levels for the protection of aquatic organisms. Fish intersex condition was most frequently observed and most severe in black basses and was less frequently detected and less severe in sunfishes and catfishes. The occurrence of the intersex condition in fish showed site-related effects, rather than increasing longitudinal trends from upstream to downstream. Mean black bass and catfish tissue contaminant concentrations were higher than that of sunfish, likely because of the latter's lower trophic position in the food web. Principal component analysis identified waterborne PAHs as the most correlated environmental contaminant with intersex occurrence and severity in black bass and sunfish. As indicated by the intersex condition, EACs have adverse but often variable effects on the health of wild sport fishes in this river, likely due to fluctuations in EAC inputs and the dynamic nature of the riverine system. These findings enhance the understanding of the relationship between contaminants and fish health and provide information to guide ecologically comprehensive conservation and management decisions. Copyright © 2018 Elsevier B.V. All rights reserved.

Likelihood analysis of species occurrence probability from presence-only data for modelling species distributions

USGS Publications Warehouse

Royle, J. Andrew; Chandler, Richard B.; Yackulic, Charles; Nichols, James D.

2012-01-01

1. Understanding the factors affecting species occurrence is a pre-eminent focus of applied ecological research. However, direct information about species occurrence is lacking for many species. Instead, researchers sometimes have to rely on so-called presence-only data (i.e. when no direct information about absences is available), which often results from opportunistic, unstructured sampling. MAXENT is a widely used software program designed to model and map species distribution using presence-only data. 2. We provide a critical review of MAXENT as applied to species distribution modelling and discuss how it can lead to inferential errors. A chief concern is that MAXENT produces a number of poorly defined indices that are not directly related to the actual parameter of interest – the probability of occurrence (ψ). This focus on an index was motivated by the belief that it is not possible to estimate ψ from presence-only data; however, we demonstrate that ψ is identifiable using conventional likelihood methods under the assumptions of random sampling and constant probability of species detection. 3. The model is implemented in a convenient r package which we use to apply the model to simulated data and data from the North American Breeding Bird Survey. We demonstrate that MAXENT produces extreme under-predictions when compared to estimates produced by logistic regression which uses the full (presence/absence) data set. We note that MAXENT predictions are extremely sensitive to specification of the background prevalence, which is not objectively estimated using the MAXENT method. 4. As with MAXENT, formal model-based inference requires a random sample of presence locations. Many presence-only data sets, such as those based on museum records and herbarium collections, may not satisfy this assumption. However, when sampling is random, we believe that inference should be based on formal methods that facilitate inference about interpretable ecological quantities instead of vaguely defined indices.

Quantifying seining detection probability for fishes of Great Plains sand‐bed rivers

USGS Publications Warehouse

Mollenhauer, Robert; Logue, Daniel R.; Brewer, Shannon K.

2018-01-01

Species detection error (i.e., imperfect and variable detection probability) is an essential consideration when investigators map distributions and interpret habitat associations. When fish detection error that is due to highly variable instream environments needs to be addressed, sand‐bed streams of the Great Plains represent a unique challenge. We quantified seining detection probability for diminutive Great Plains fishes across a range of sampling conditions in two sand‐bed rivers in Oklahoma. Imperfect detection resulted in underestimates of species occurrence using naïve estimates, particularly for less common fishes. Seining detection probability also varied among fishes and across sampling conditions. We observed a quadratic relationship between water depth and detection probability, in which the exact nature of the relationship was species‐specific and dependent on water clarity. Similarly, the direction of the relationship between water clarity and detection probability was species‐specific and dependent on differences in water depth. The relationship between water temperature and detection probability was also species dependent, where both the magnitude and direction of the relationship varied among fishes. We showed how ignoring detection error confounded an underlying relationship between species occurrence and water depth. Despite imperfect and heterogeneous detection, our results support that determining species absence can be accomplished with two to six spatially replicated seine hauls per 200‐m reach under average sampling conditions; however, required effort would be higher under certain conditions. Detection probability was low for the Arkansas River Shiner Notropis girardi, which is federally listed as threatened, and more than 10 seine hauls per 200‐m reach would be required to assess presence across sampling conditions. Our model allows scientists to estimate sampling effort to confidently assess species occurrence, which maximizes the use of available resources. Increased implementation of approaches that consider detection error promote ecological advancements and conservation and management decisions that are better informed.

Acoustic occurrence detection of a newly recorded Indo-Pacific humpback dolphin population in waters southwest of Hainan Island, China.

PubMed

Dong, Lijun; Liu, Mingming; Dong, Jianchen; Li, Songhai

2017-11-01

In 2014, Indo-Pacific humpback dolphins were recorded for the first time in waters southwest of Hainan Island, China. In this paper, the temporal occurrence of Indo-Pacific humpback dolphins in this region was detected by stationary passive acoustic monitoring. During the 130-day observation period (from January to July 2016), 1969 click trains produced by Indo-Pacific humpback dolphins were identified, and 262 ten-minute recording bins contained echolocation click trains of dolphins, of which 70.9% were at night and 29.1% were during the day. A diurnal rhythm with a nighttime peak in acoustic detections was found. Passive acoustic detections indicated that the Indo-Pacific humpback dolphins frequently occurred in this area and were detected mainly at night. This information may be relevant to conservation efforts for these dolphins in the near future.

Method and apparatus for detecting and determining event characteristics with reduced data collection

NASA Technical Reports Server (NTRS)

Totman, Peter D. (Inventor); Everton, Randy L. (Inventor); Egget, Mark R. (Inventor); Macon, David J. (Inventor)

2007-01-01

A method and apparatus for detecting and determining event characteristics such as, for example, the material failure of a component, in a manner which significantly reduces the amount of data collected. A sensor array, including a plurality of individual sensor elements, is coupled to a programmable logic device (PLD) configured to operate in a passive state and an active state. A triggering event is established such that the PLD records information only upon detection of the occurrence of the triggering event which causes a change in state within one or more of the plurality of sensor elements. Upon the occurrence of the triggering event, the change in state of the one or more sensor elements causes the PLD to record in memory which sensor element detected the event and at what time the event was detected. The PLD may be coupled with a computer for subsequent downloading and analysis of the acquired data.

Detecting Micro-seismicity and Long-duration Tremor-like Events from the Oklahoma Wavefield Experiment

NASA Astrophysics Data System (ADS)

Li, C.; Li, Z.; Peng, Z.; Zhang, C.; Nakata, N.

2017-12-01

Oklahoma has experienced abrupt increase of induced seismicity in the last decade. An important way to fully understand seismic activities in Oklahoma is to obtain more complete earthquake catalogs and detect different types of seismic events. The IRIS Community Wavefield Demonstration Experiment was deployed near Enid, Oklahoma in Summer of 2016. The dataset from this ultra-dense array provides an excellent opportunity for detecting microseismicity in that region with wavefield approaches. Here we examine continuous waveforms recorded by 3 seismic lines using local coherence for ultra-dense arrays (Li et al., 2017), which is a measure of cross-correlation of waveform at each station with its nearby stations. So far we have detected more than 5,000 events from 06/22/2016 to 07/20/2016, and majority of them are not listed on the regional catalog of Oklahoma or global catalogs, indicating that they are local events. We also identify 15-20 long-period long-duration events, some of them lasting for more than 500 s. Such events have been found at major plate-boundary faults (also known as deep tectonic tremor), as well as during hydraulic fracturing, slow-moving landslides and glaciers. Our next step is to locate these possible tremor-like events with their relative arrival times across the array and compare their occurrence times with solid-earth tides and injection histories to better understand their driving mechanisms.

US EPA's National Dioxin Air Monitoring Network: Analytical ...

EPA Pesticide Factsheets

The U.S. EPA has established a National Dioxin Air Monitoring Network (NDAMN) to determine the temporal and geographical variability of atmospheric chlorinated dibenzo-p-dioxins (CDDs), furans (CDFs), and coplanar polychlorinated biphenyls (PCBs) at rural and non-impacted locations throughout the United States. Currently operating at 32 sampling stations, NDAMN has three primary purposes: (1) to determine the atmospheric levels and occurrences of dioxin-like compounds in rural and agricultural areas where livestock, poultry, and animal feed crops are grown; (2) to provide measurements of atmospheric levels in different geographic regions of the U.S.; and (3) to provide information regarding the long-range transport of dioxin-like compounds in air over the U.S. Designed in 1997, NDAMN has been implemented in phases, with the first phase consisting of 9 monitoring stations and is achieving congener-specific detection lmits of 0.1 fg/m3 for 2,3,7,8-TCDD and 10 fg/m3 for OCDD. With respect to coplanar PCBs, the detection limits are generally higher due to the presence of background levels in the air during the preparation and processing of the samples. Achieving these extremely low levels of detection present a host of analytical issues. Among these issues are the methods used to establish ultra-trace detection limits, measures to ensure against and monitor for breakthrough of native analytes when sampling large volumes of air, and procedures for handling and e

Revisiting Recombination Signal in the Tick-Borne Encephalitis Virus: A Simulation Approach

PubMed Central

Johansson, Magnus; Norberg, Peter

2016-01-01

The hypothesis of wide spread reticulate evolution in Tick-Borne Encephalitis virus (TBEV) has recently gained momentum with several publications describing past recombination events involving various TBEV clades. Despite a large body of work, no consensus has yet emerged on TBEV evolutionary dynamics. Understanding the occurrence and frequency of recombination in TBEV bears significant impact on epidemiology, evolution, and vaccination with live vaccines. In this study, we investigated the possibility of detecting recombination events in TBEV by simulating recombinations at several locations on the virus’ phylogenetic tree and for different lengths of recombining fragments. We derived estimations of rates of true and false positive for the detection of past recombination events for seven recombination detection algorithms. Our analytical framework can be applied to any investigation dealing with the difficult task of distinguishing genuine recombination signal from background noise. Our results suggest that the problem of false positives associated with low detection P-values in TBEV, is more insidious than generally acknowledged. We reappraised the recombination signals present in the empirical data, and showed that reliable signals could only be obtained in a few cases when highly genetically divergent strains were involved, whereas false positives were common among genetically similar strains. We thus conclude that recombination among wild-type TBEV strains may occur, which has potential implications for vaccination with live vaccines, but that these events are surprisingly rare. PMID:27760182

Occurrence of the Cys311 DRD2 variant in a pedigree multiply affected with panic disorder

DOE Office of Scientific and Technical Information (OSTI.GOV)

Crawford, F.; Hoyne, J.; Diaz, P.

1995-08-14

Following the detection of the rare DRD2 codon 311 variant (Ser{yields}Cys) in an affected member from a large, multiply affected panic disorder family, we investigated the occurrence of this variant in other family members. The variant occurred in both affected and unaffected individuals. Further screening in panic disorder sib pairs unrelated to this family failed to detect the Cys311 variant. Our data suggests that this variant has no pathogenic role in panic disorder. 18 refs., 1 fig.

Mobility of Indaziflam Influenced by Soil Properties in a Semi-Arid Area

PubMed Central

González-Delgado, Amir M.; Ashigh, Jamshid; Shukla, Manoj K.; Perkins, Russ

2015-01-01

Indaziflam, a broad-spectrum, pre-emergence herbicide was the focus of a field investigation conducted after the identification of sporadic injury symptoms on the pecan trees a few months after the application. The study was conducted in two pecan orchards located in southern New Mexico, USA, and southeastern Arizona, USA. The objectives of this study were to evaluate the occurrence and distribution of indaziflam in the soil profile of areas where pecan trees were injured (impacted) and areas where no injury symptoms were observed (unimpacted), and to determine the relationship between indaziflam concentrations and soil properties in those locations. Soil samples were collected, one year after applications, from six depth representing 0–7, 7–15, 15–30, 30–60, 60–90 and 90–120 cm depth to determine the concentration of indaziflam in impacted and unimpacted areas of the two orchards. Soil samples were analyzed to determine texture, bulk density, organic matter content, cation exchange capacity, pH, nitrate, chloride and calcium concentrations. The detection frequency of indaziflam was higher in Arizona than in New Mexico, likely due to the differences between the tillage practices and sand contents of the orchards. No significant correlations were observed between indaziflam and soil properties, however indaziflam was mostly detected in areas where pecan trees were unimpacted probably as result of greater organic matter content and soil porosity. More research is needed to understand the causes of injury to pecan trees by indaziflam application. PMID:25950921

Detection of Anaplasma spp. and Ehrlichia spp. anibodies, and Dirofilaria immitis antigens in dogs from seven locations of Morocco.

PubMed

Elhamiani Khatat, Sarah; Khallaayoune, Khalid; Errafyk, Nabil; Van Gool, Frans; Duchateau, Luc; Daminet, Sylvie; Kachani, Malika; El Amri, Hamid; Azrib, Rahma; Sahibi, Hamid

2017-05-30

In Morocco no data has been published on canine exposure to Anaplasma spp., Borrrelia burgdorferi, and Ehrlichia spp., and only one report is available on the occurrence of Dirofilaria immitis in dogs. Therefore, the aim of this study was to collect current data on the canine exposure to these vector-borne pathogens (VBPs) in Morocco. A total of 217 urban (n=57), rural (n=110) and military (n=50) dogs from seven Moroccan locations were screened for Anaplasma spp., B. burgdorferi and Ehrlichia spp. antibodies and for D. immitis antigens using a commercial in-clinic ELISA test. Of these dogs, 182 (83.9%) tested positive for at least one pathogen and positivity to two or three pathogens was found in 14.3% and 2.3% of the dogs, respectively. Ehrlichia spp. antibodies (34.6%) were the most frequently detected followed by Anaplasma spp. antibodies (16.6%) and D. immitis antigens (16.1%). None of the dogs was tested seropositive to B. burgdorferi. Statistically significant differences in seropositivity rates were found for Ehrlichia spp. and D. immitis in rural dogs especially those from the north central region (p<0.001) but not for Anaplasma spp. No significant difference was found according to the health status of the dog. This study demonstrates that Moroccan dogs are at high risk of acquiring a vector-borne infection. Copyright © 2017 Elsevier B.V. All rights reserved.

Quantification of agricultural drought occurrence as an estimate for insurance programs

NASA Astrophysics Data System (ADS)

Bannayan, M.; Hoogenboom, G.

2015-11-01

Temporal irregularities of rainfall and drought have major impacts on rainfed cropping systems. The main goal of this study was to develop an approach for realizing drought occurrence based on local winter wheat yield loss and rainfall. The domain study included 11 counties in the state of Washington that actively grow rainfed winter wheat and an uncertainty rainfall evaluation model using daily rainfall values from 1985 to 2007. An application was developed that calculates a rainfall index for insurance that was then used to determine the drought intensity for each study year and for each study site. Evaluation of the drought intensity showed that both the 1999-2000 and 2000-2001 growing seasons were stressful years for most of the study locations, while the 2005-2006 and the 2006-2007 growing seasons experienced the lowest drought intensity for all locations. Our results are consistent with local extension reports of drought occurrences. Quantification of drought intensity based on this application could provide a convenient index for insurance companies for determining the effect of rainfall and drought on crop yield loss under the varying weather conditions of semi-arid regions.

Occurrence of carbapenemase-producing bacteria in coastal recreational waters.

PubMed

Montezzi, Lara Feital; Campana, Eloiza Helena; Corrêa, Laís Lisboa; Justo, Livia Helena; Paschoal, Raphael Paiva; da Silva, Isabel Lemos Vieira Dias; Souza, Maria do Carmo Maciel; Drolshagen, Marcia; Picão, Renata Cristina

2015-02-01

The spread of carbapenemase-producing Gram-negative rods is an emerging global problem. Although most infections due to carbapenemase producers are limited to healthcare institutions, reports of the occurrence of clinically relevant carbapenemase producers in sewage and polluted rivers are increasingly frequent. Polluted rivers flowing to oceans may contaminate coastal waters with multidrug-resistant bacteria, potentially threatening the safety of recreational activities in these locations. Here we assessed the occurrence of carbapenemase producers in water from touristic beaches located in Rio de Janeiro, Brazil, showing distinct pollution patterns. The presence of enterobacteria was noted, including the predominantly environmental genus Kluyvera spp., producing either Klebsiella pneumoniae carbapenemase (KPC) or Guyana extended-spectrum (GES)-type carbapenemases and often associated with quinolone resistance determinants. An Aeromonas sp. harbouring blaKPC and qnrS was also observed. These findings strengthen the role of aquatic matrices as reservoirs and vectors of clinically relevant antimicrobial-resistant bacteria, with potential to favour the spread of these resistance threats throughout the community. Copyright © 2014 Elsevier B.V. and the International Society of Chemotherapy. All rights reserved.

The characteristics of heat flow in the Shenhu gas hydrate drilling area, northern South China Sea

NASA Astrophysics Data System (ADS)

Xu, Xing; Wan, Zhifeng; Wang, Xianqing; Sun, Yuefeng; Xia, Bin

2016-12-01

Marine heat flow is of great significance for the formation and occurrence of seabed oil, gas and gas hydrate resources. Geothermal gradient is an important parameter in determining the thickness of the hydrate stability zone. The northern slope of the South China Sea is rich in gas hydrate resources. Several borehole drilling attempts were successful in finding hydrates in the Shenhu area, while others were not. The failures demand further study on the distribution regularities of heat flow and its controlling effects on hydrate occurrence. In this study, forty-eight heat flow measurements are analyzed in the Shenhu gas hydrate drilling area, located in the northern South China Sea, together with their relationship to topography, sedimentary environment and tectonic setting. Canyons are well developed in the study area, caused mainly by the development of faults, faster sediment supply and slumping of the Pearl River Estuary since the late Miocene in the northern South China Sea. The heat flow values in grooves, occurring always in fault zones, are higher than those of ridges. Additionally, the heat flow values gradually increase from the inner fan, to the middle fan, to the external fan subfacies. The locations with low heat flow such as ridges, locations away from faults and the middle fan subfacies, are more conducive to gas hydrate occurrence.

Habitat Preferences of Boros schneideri (Coleoptera: Boridae) in the Natural Tree Stands of the Białowieża Forest

PubMed Central

Gutowski, Jerzy M.; Sućko, Krzysztof; Zub, Karol; Bohdan, Adam

2014-01-01

Abstract We analyzed habitat requirements of Boros schneideri (Panzer, 1796) (Coleoptera: Boridae) in the natural forests of the continental biogeographical region, using data collected in the Białowieża Forest. This species has been found on the six host trees, but it preferred dead, standing pine trees, characterized by large diameter, moderately moist and moist phloem but avoided trees in sunny locations. It occurred mostly in mesic and wet coniferous forests. This species demonstrated preferences for old tree stands (over 140-yr old), and its occurrence in younger tree-stand age classes (minimum 31–40-yr old) was not significantly different from random distribution. B. schneideri occupied more frequently locations distant from the forest edge, which were less affected by logging. Considering habitat requirements, character of occurrence, and decreasing number of occupied locations in the whole range of distribution, this species can be treated as relict of primeval forests. PMID:25527586

First Detection of Bat White-Nose Syndrome in Western North America.

PubMed

Lorch, Jeffrey M; Palmer, Jonathan M; Lindner, Daniel L; Ballmann, Anne E; George, Kyle G; Griffin, Kathryn; Knowles, Susan; Huckabee, John R; Haman, Katherine H; Anderson, Christopher D; Becker, Penny A; Buchanan, Joseph B; Foster, Jeffrey T; Blehert, David S

2016-01-01

White-nose syndrome (WNS) is an emerging fungal disease of bats caused by Pseudogymnoascus destructans. Since it was first detected near Albany, NY, in 2006, the fungus has spread across eastern North America, killing unprecedented numbers of hibernating bats. The devastating impacts of WNS on Nearctic bat species are attributed to the likely introduction of P. destructans from Eurasia to naive host populations in eastern North America. Since 2006, the disease has spread in a gradual wavelike pattern consistent with introduction of the pathogen at a single location. Here, we describe the first detection of P. destructans in western North America in a little brown bat (Myotis lucifugus) from near Seattle, WA, far from the previously recognized geographic distribution of the fungus. Whole-genome sequencing and phylogenetic analyses indicated that the isolate of P. destructans from Washington grouped with other isolates of a presumed clonal lineage from the eastern United States. Thus, the occurrence of P. destructans in Washington does not likely represent a novel introduction of the fungus from Eurasia, and the lack of intensive surveillance in the western United States makes it difficult to interpret whether the occurrence of P. destructans in the Pacific Northwest is disjunct from that in eastern North America. Although there is uncertainty surrounding the impacts of WNS in the Pacific Northwest, the presence of the pathogen in western North America could have major consequences for bat conservation. IMPORTANCE White-nose syndrome (WNS) represents one of the most consequential wildlife diseases of modern times. Since it was first documented in New York in 2006, the disease has killed millions of bats and threatens several formerly abundant species with extirpation or extinction. The spread of WNS in eastern North America has been relatively gradual, inducing optimism that disease mitigation strategies could be established in time to conserve bats susceptible to WNS in western North America. The recent detection of the fungus that causes WNS in the Pacific Northwest, far from its previous known distribution, increases the urgency for understanding the long-term impacts of this disease and for developing strategies to conserve imperiled bat species.

First Detection of Bat White-Nose Syndrome in Western North America

PubMed Central

Palmer, Jonathan M.; Lindner, Daniel L.; Ballmann, Anne E.; George, Kyle G.; Griffin, Kathryn; Knowles, Susan; Huckabee, John R.; Haman, Katherine H.; Anderson, Christopher D.; Becker, Penny A.; Buchanan, Joseph B.; Foster, Jeffrey T.; Blehert, David S.

2016-01-01

ABSTRACT White-nose syndrome (WNS) is an emerging fungal disease of bats caused by Pseudogymnoascus destructans. Since it was first detected near Albany, NY, in 2006, the fungus has spread across eastern North America, killing unprecedented numbers of hibernating bats. The devastating impacts of WNS on Nearctic bat species are attributed to the likely introduction of P. destructans from Eurasia to naive host populations in eastern North America. Since 2006, the disease has spread in a gradual wavelike pattern consistent with introduction of the pathogen at a single location. Here, we describe the first detection of P. destructans in western North America in a little brown bat (Myotis lucifugus) from near Seattle, WA, far from the previously recognized geographic distribution of the fungus. Whole-genome sequencing and phylogenetic analyses indicated that the isolate of P. destructans from Washington grouped with other isolates of a presumed clonal lineage from the eastern United States. Thus, the occurrence of P. destructans in Washington does not likely represent a novel introduction of the fungus from Eurasia, and the lack of intensive surveillance in the western United States makes it difficult to interpret whether the occurrence of P. destructans in the Pacific Northwest is disjunct from that in eastern North America. Although there is uncertainty surrounding the impacts of WNS in the Pacific Northwest, the presence of the pathogen in western North America could have major consequences for bat conservation. IMPORTANCE White-nose syndrome (WNS) represents one of the most consequential wildlife diseases of modern times. Since it was first documented in New York in 2006, the disease has killed millions of bats and threatens several formerly abundant species with extirpation or extinction. The spread of WNS in eastern North America has been relatively gradual, inducing optimism that disease mitigation strategies could be established in time to conserve bats susceptible to WNS in western North America. The recent detection of the fungus that causes WNS in the Pacific Northwest, far from its previous known distribution, increases the urgency for understanding the long-term impacts of this disease and for developing strategies to conserve imperiled bat species. PMID:27504499

Hyperspectral remote sensing detection of petroleum hydrocarbons in mixtures with mineral substrates: Implications for onshore exploration and monitoring

NASA Astrophysics Data System (ADS)

Scafutto, Rebecca Del'Papa Moreira; de Souza Filho, Carlos Roberto; de Oliveira, Wilson José

2017-06-01

Remote detection and mapping of hydrocarbons (PHCs) in situ in continental areas is still an operational challenge due to the small scale of the occurrences and the mix of spectral signatures of PHCs and mineral substrates in imagery pixels. Despite the increasing development of new technologies, the use of hyperspectral remote sensing data as a complementary tool for both oil exploration and environmental monitoring is not standard in the oil industry, despite its potential. The high spectral resolution of hyperspectral images allows the direct identification of PHCs on the surface and provides valuable information regarding the location and spread of oil spills that can assist in containment and cleanup operations. Combining the spectral information with statistical techniques also offers the potential to improve exploration programs focused on the discovery of new exploration fields through the qualitative and quantitative characterization of oil occurrences in onshore areas. In this scenario, the aim of this work was to develop methods that can assist the detection of continental areas affected by natural oil seeps or leaks (crude oils and fuels). A field experiment was designed by impregnating several mineral substrates with crude oils and fuels in varying concentrations. Simultaneous measurements of soil-PHC combinations were taken using both a hand-held spectrometer and an airborne hyperspectral imager. Classification algorithms were used to directly map the PHCs on the surface. Spectral information was submitted to a PLS (partial least square regression) to create a prediction model for the estimation of the concentrations of PHCs in soils. The developed model was able to detect three impregnation levels (low, intermediate, high), predicting values close to the concentrations used in the experiment. Given the quality of the results in controlled experiments, the methods developed in this research show the potential to support the oil industry in the discovery of new oil plays and reservoirs and to define the contamination stage and spread of oil/fuel in areas affected by accidental leaks, improving both exploration and environmental monitoring.

Invasive Shrub Mapping in an Urban Environment from Hyperspectral and LiDAR-Derived Attributes

PubMed Central

Chance, Curtis M.; Coops, Nicholas C.; Plowright, Andrew A.; Tooke, Thoreau R.; Christen, Andreas; Aven, Neal

2016-01-01

Proactive management of invasive species in urban areas is critical to restricting their overall distribution. The objective of this work is to determine whether advanced remote sensing technologies can help to detect invasions effectively and efficiently in complex urban ecosystems such as parks. In Surrey, BC, Canada, Himalayan blackberry (Rubus armeniacus) and English ivy (Hedera helix) are two invasive shrub species that can negatively affect native ecosystems in cities and managed urban parks. Random forest (RF) models were created to detect these two species using a combination of hyperspectral imagery, and light detection and ranging (LiDAR) data. LiDAR-derived predictor variables included irradiance models, canopy structural characteristics, and orographic variables. RF detection accuracy ranged from 77.8 to 87.8% for Himalayan blackberry and 81.9 to 82.1% for English ivy, with open areas classified more accurately than areas under canopy cover. English ivy was predicted to occur across a greater area than Himalayan blackberry both within parks and across the entire city. Both Himalayan blackberry and English ivy were mostly located in clusters according to a Local Moran’s I analysis. The occurrence of both species decreased as the distance from roads increased. This study shows the feasibility of producing highly accurate detection maps of plant invasions in urban environments using a fusion of remotely sensed data, as well as the ability to use these products to guide management decisions. PMID:27818664

Detection of kinetic change points in piece-wise linear single molecule motion

NASA Astrophysics Data System (ADS)

Hill, Flynn R.; van Oijen, Antoine M.; Duderstadt, Karl E.

2018-03-01

Single-molecule approaches present a powerful way to obtain detailed kinetic information at the molecular level. However, the identification of small rate changes is often hindered by the considerable noise present in such single-molecule kinetic data. We present a general method to detect such kinetic change points in trajectories of motion of processive single molecules having Gaussian noise, with a minimum number of parameters and without the need of an assumed kinetic model beyond piece-wise linearity of motion. Kinetic change points are detected using a likelihood ratio test in which the probability of no change is compared to the probability of a change occurring, given the experimental noise. A predetermined confidence interval minimizes the occurrence of false detections. Applying the method recursively to all sub-regions of a single molecule trajectory ensures that all kinetic change points are located. The algorithm presented allows rigorous and quantitative determination of kinetic change points in noisy single molecule observations without the need for filtering or binning, which reduce temporal resolution and obscure dynamics. The statistical framework for the approach and implementation details are discussed. The detection power of the algorithm is assessed using simulations with both single kinetic changes and multiple kinetic changes that typically arise in observations of single-molecule DNA-replication reactions. Implementations of the algorithm are provided in ImageJ plugin format written in Java and in the Julia language for numeric computing, with accompanying Jupyter Notebooks to allow reproduction of the analysis presented here.

Prevalence of Extended-Spectrum β-Lactamases CTX-M-8 and CTX-M-2-Producing Salmonella Serotypes from Clinical and Nonhuman Isolates in Brazil.

PubMed

Fernandes, Sueli Aparecida; Camargo, Carlos Henrique; Francisco, Gabriela Rodrigues; Bueno, Maria Fernanda Campagnari; Garcia, Doroti Oliveira; Doi, Yohei; Casas, Monique Ribeiro Tiba

2017-07-01

We characterized extended-spectrum β-lactamases (ESBL) enzymes among Salmonella strains isolated in Brazil from 2009 to 2014. Salmonella recovered from both clinical and nonhuman (food, poultry, and environment) sources were subjected to antimicrobial susceptibility testing. β-lactamases genes were detected by polymerase chain reaction/sequencing; plasmid profiles and transferability were assessed by S1-pulsed field gel electrophoresis (PFGE). Genetic diversity was evaluated by XbaI-PFGE. Out of 630 Salmonella strains screened, 46 displayed ESBL phenotype, distributed across 11 different serotypes. bla CTX-M-8 and bla CTX-M-2 genes were detected at frequencies of 47% and 41%, respectively. bla SHV-5 and bla SHV-2 were also detected but in lower frequencies (4%, 2%). bla TEM-1 gene was detected in 22% of the strains. Most of the ESBL genes were transferable by conjugation, and the respective bla ESBL gene was detected in the recipient strain, indicating the location of ESBL determinants on transferable plasmids. XbaI-PFGE revealed genomic diversity of Salmonella Typhimurium bearing bla CTX-M-2 , bla CTX-M-8 , bla TEM-1 , and bla SHV-2 genes. Salmonella Muenchen (harboring bla CTX-M-2 ) and Salmonella Corvallis (bla CTX-M-8 and bla SHV-5 ) showed clonal relatedness within respective serotypes. Our findings underscore the occurrence of diverse ESBL genes in several Salmonella serotypes, reinforcing the need for continuous surveillance of resistance genes circulating in human and nonhuman sources.

Reported Historic Asbestos Mines, Historic Asbestos Prospects, and Other Natural Occurrences of Asbestos in Oregon and Washington

USGS Publications Warehouse

Van Gosen, Bradley S.

2010-01-01

This map and its accompanying dataset provide information for 51 natural occurrences of asbestos in Washington and Oregon, using descriptions found in the geologic literature. Data on location, mineralogy, geology, and relevant literature for each asbestos site are provided. Using the map and digital data in this report, the user can examine the distribution of previously reported asbestos occurrences and their geological characteristics in the Pacific Northwest States of Washington and Oregon. This report is part of an ongoing study by the U.S. Geological Survey to identify and map reported natural asbestos occurrences in the United States, which thus far includes similar maps and datasets of natural asbestos occurrences within the Eastern United States (http://pubs.usgs.gov/of/2005/1189/), the Central United States (http://pubs.usgs.gov/of/2006/1211/), the Rocky Mountain States (http://pubs.usgs.gov/of/2007/1182/), and the Southwestern United States (http://pubs.usgs.gov/of/2008/1095/). These reports are intended to provide State and local government agencies and other stakeholders with geologic information on natural occurrences of asbestos in the United States.

Reported Historic Asbestos Mines, Historic Asbestos Prospects, and Natural Asbestos Occurrences in the Southwestern United States (Arizona, Nevada, and Utah)

USGS Publications Warehouse

Van Gosen, Bradley S.

2008-01-01

This map and its accompanying dataset provide information for 113 natural asbestos occurrences in the Southwestern United States (U.S.), using descriptions found in the geologic literature. Data on location, mineralogy, geology, and relevant literature for each asbestos site are provided. Using the map and digital data in this report, the user can examine the distribution of previously reported asbestos occurrences and their geological characteristics in the Southwestern U.S., which includes sites in Arizona, Nevada, and Utah. This report is part of an ongoing study by the U.S. Geological Survey to identify and map reported natural asbestos occurrences in the U.S., which thus far includes similar maps and datasets of natural asbestos occurrences within the Eastern U.S. (http://pubs.usgs.gov/of/2005/1189/), the Central U.S. (http://pubs.usgs.gov/of/2006/1211/), and the Rocky Mountain States (http://pubs.usgs.gov/of/2007/1182/. These reports are intended to provide State and local government agencies and other stakeholders with geologic information on natural occurrences of asbestos in the U.S.

Reported Historic Asbestos Mines, Historic Asbestos Prospects, and Natural Asbestos Occurrences in the Rocky Mountain States of the United States (Colorado, Idaho, Montana, New Mexico, and Wyoming)

USGS Publications Warehouse

Van Gosen, Bradley S.

2007-01-01

This map and its accompanying dataset provide information for 48 natural asbestos occurrences in the Rocky Mountain States of the United States (U.S.), using descriptions found in the geologic literature. Data on location, mineralogy, geology, and relevant literature for each asbestos site are provided. Using the map and digital data in this report, the user can examine the distribution of previously reported asbestos occurrences and their geological characteristics in the Rocky Mountain States. This report is part of an ongoing study by the U.S. Geological Survey to identify and map reported natural asbestos occurrences in the U.S., which thus far includes similar maps and datasets of natural asbestos occurrences within the Eastern U.S. (http://pubs.usgs.gov/of/2005/1189/) and the Central U.S. (http://pubs.usgs.gov/of/2006/1211/). These reports are intended to provide State and local government agencies and other stakeholders with geologic information on natural occurrences of asbestos in the U.S.

Biogeographical Analysis of Chemical Co-Occurrence Data to ...

EPA Pesticide Factsheets

A challenge with multiple chemical risk assessment is the need to consider the joint behavior of chemicals in mixtures. To address this need, pharmacologists and toxicologists have developed methods over the years to evaluate and test chemical interaction. In practice, however, testing of chemical interaction more often comprises ad hoc binary combinations and rarely examines higher order combinations. One explanation for this practice is the belief that there are simply too many possible combinations of chemicals to consider. Indeed, under stochastic conditions the possible number of chemical combinations scales geometrically as the pool of chemicals increases. However, the occurrence of chemicals in the environment is determined by factors, economic in part, which favor some chemicals over others. We investigate methods from the field of biogeography, originally developed to study avian species co-occurrence patterns, and adapt these approaches to examine chemical co-occurrence. These methods were applied to a national survey of pesticide residues in 168 child care centers from across the country. Our findings show that pesticide co-occurrence in the child care center was not random but highly structured, leading to the co-occurrence of specific pesticide combinations. Thus, ecological studies of species co-occurrence parallel the issue of chemical co-occurrence at specific locations. Both are driven by processes that introduce structure in the pattern of co-o

Neuroendocrine Tumors in the Stomach, Duodenum, and Pancreas Accompanied by Novel MEN1 Gene Mutation.

PubMed

Yang, Min A; Lee, Woong Ki; Shin, Hong Shik; Park, Sung Hyun; Kim, Byung Sun; Kim, Ji Woong; Cho, Jin Woong; Yun, So Hee

2017-03-25

Multiple endocrine neoplasia type 1 (MEN1) syndrome is a relatively rare disease, characterized by the occurrence of multiple endocrine tumors in the parathyroid and pituitary glands as well as the pancreas. Here, we report a case of MEN1 with neuroendocrine tumors (NETs) in the stomach, duodenum, and pancreas. A 53-year-old man visited our hospital to manage gastric NET. Five years prior to his visit, he had undergone surgery for incidental meningioma. His brother had pancreatic nodules and a history of surgery for adrenal adenoma. His brother's daughter also had pancreatic nodules, but had not undergone surgery. The lesion was treated by endoscopic submucosal dissection and diagnosed as a grade 1 NET. Another small NET was detected in the second duodenal portion, resected by endoscopic submucosal dissection, which was also diagnosed as a grade 1 NET. During evaluation, three nodules were detected in the pancreas, and no evidence of pituitary, parathyroid tumors, or metastasis was observed. After surgery, the pancreatic lesions were diagnosed as NETs, with the same immunohistochemical patterns as those of the stomach and duodenum. Genetic testing was performed, and a heterozygous mutation was detected in the MEN1 gene, which is located on 11q13.

Low frequency baleen whale calls detected on ocean-bottom seismometers in the Lau basin, southwest Pacific Ocean.

PubMed

Brodie, Dana C; Dunn, Robert A

2015-01-01

Ten months of broadband seismic data, recorded on six ocean-bottom seismographs located in the Lau Basin, were examined to identify baleen whale species. As the first systematic survey of baleen whales in this part of the southwest Pacific Ocean, this study reveals the variety of species present and their temporal occurrence in and near the basin. Baleen whales produce species-specific low frequency calls that can be identified by distinct patterns in data spectrograms. By matching spectrograms with published accounts, fin, Bryde's, Antarctic blue, and New Zealand blue whale calls were identified. Probable whale sounds that could not be matched to published spectrograms, as well as non-biologic sounds that are likely of volcanogenic origin, were also recorded. Detections of fin whale calls (mid-June to mid-October) and blue whale calls (June through September) suggest that these species migrate through the region seasonally. Detections of Bryde's whale calls (primarily February to June, but also other times of the year) suggest this species resides around the basin nearly year round. The discovery of previously unpublished call types emphasizes the limited knowledge of the full call repertoires of baleen whales and the utility of using seismic survey data to enhance understanding in understudied regions.

Predicting conditions for the reception of one-hop signals from the Siple transmitter experiment using the Kp index

NASA Astrophysics Data System (ADS)

Li, J. D.; Spasojevic, M.; Inan, U. S.

2015-10-01

Wave injection experiments provide an opportunity to explore and quantify aspects of nonlinear wave-particle phenomena in a controlled manner. Waves are injected into space from ground-based ELF/VLF transmitters, and the modified waves are measured by radio receivers on the ground in the conjugate hemisphere. These experiments are expensive and challenging projects to build and to operate, and the transmitted waves are not always detected in the conjugate region. Even the powerful transmitter located at Siple Station, Antarctica in 1986, estimated to radiate over 1 kW, only reported a reception rate of ˜40%, indicating that a significant number of transmissions served no observable scientific purpose and reflecting the difficulty in determining suitable conditions for transmission and reception. Leveraging modern machine-learning classification techniques, we apply two statistical techniques, a Bayes and a support vector machine classifier, to predict the occurrence of detectable one-hop transmissions from Siple data with accuracies on the order of 80%-90%. Applying these classifiers to our 1986 Siple data set, we detect 406 receptions of Siple transmissions which we analyze to generate more robust statistics on nonlinear growth rates, 3 dB/s-270 dB/s, and nonlinear total amplification, 3 dB-41 dB.

Laser fluorometric analysis of plants for uranium exploration

USGS Publications Warehouse

Harms, T.F.; Ward, F.N.; Erdman, J.A.

1981-01-01

A preliminary test of biogeochemical exploration for locating uranium occurrences in the Marfa Basin, Texas, was conducted in 1978. Only 6 of 74 plant samples (mostly catclaw mimosa, Mimosa biuncifera) contained uranium in amounts above the detection limit (0.4 ppm in the ash) of the conventional fluorometric method. The samples were then analyzed using a Scintrex UA-3 uranium analyzer* * Use of trade names in this paper is for descriptive purposes only and does not constitute endorsement by the U.S. Geological Survey. - an instrument designed for direct analysis of uranium in water, and which can be conveniently used in a mobile field laboratory. The detection limit for uranium in plant ash (0.05 ppm) by this method is almost an order of magnitude lower than with the fluorometric conventional method. Only 1 of the 74 samples contained uranium below the detection limit of the new method. Accuracy and precision were determined to be satisfactory. Samples of plants growing on mineralized soils and nonmineralized soils show a 15-fold difference in uranium content; whereas the soils themselves (analyzed by delayed neutron activation analysis) show only a 4-fold difference. The method involves acid digestion of ashed tissue, extraction of uranium into ethyl acetate, destruction of the ethyl acetate, dissolution of the residue in 0.005% nitric acid, and measurement. ?? 1981.

Occurrence of tetracycline resistance genes in aquaculture facilities with varying use of oxytetracycline

PubMed Central

Seyfried, Erin E.; Newton, Ryan J.; Rubert, Kennedy F.; Pedersen, Joel A.; McMahon, Katherine D.

2014-01-01

The contribution of human activities to environmental reservoirs of antibiotic resistance is poorly understood. The purpose of this study was to determine if oxytetracycline (OTC) use in aquaculture facilities increased the detection frequency (i.e. prevalence) of tetracycline resistance genes relative to facilities with no recent OTC treatment. We used PCR to screen water and sediment from four non-commercial fish farms in northwestern Wisconsin for the presence of ten tetracycline resistance determinants (tetR): tet(A), tet(B), tet(D), tet(E), tet(G), tet(M), tet(O), tet(Q), tet(S) and tet(W). Water from farms with recent OTC use had significantly higher tetR detection frequencies than did water from farms without recent OTC use, with prevalence in raceways and rearing ponds of farms with recent OTC use exceeded by more than two-fold that of farms not using OTC. Effluent from all farms, regardless of treatment regime, had higher tetR detection frequencies than their corresponding influent for all genes, but the specific combinations of tetR genes detected in a sample were not different from their corresponding influent. Although OTC use was associated with the increased occurrence and diversity of tetR genes in water samples, it was not found to relate to tetR gene occurrence in sediment samples. Sediment samples from facilities with no recent OTC use had significantly higher frequencies of tetR gene detection than did samples from facilities with recent OTC use. All of the tetR genes were detected in both the medicated and non-medicated feed samples analyzed in this study. These findings suggest that both OTC treatment in aquaculture facilities, and the farms themselves, may be sources of tetR gene introduction to the environment. To our knowledge, this is the first study to use genotypic and cultivation-independent methods to examine tetR gene occurrence associated with OTC use in aquaculture. PMID:20217406

Assessing bat detectability and occupancy with multiple automated echolocation detectors

Treesearch

Marcos P. Gorresen; Adam C. Miles; Christopher M. Todd; Frank J. Bonaccorso; Theodore J. Weller

2008-01-01

Occupancy analysis and its ability to account for differential detection probabilities is important for studies in which detecting echolocation calls is used as a measure of bat occurrence and activity. We examined the feasibility of remotely acquiring bat encounter histories to estimate detection probability and occupancy. We used echolocation detectors coupled o...

Anthropogenic organic compounds in ground water and finished water of community water systems in the Greater Twin Cities metropolitan area, Minnesota and Wisconsin, 2004–05

USGS Publications Warehouse

Tornes, Lan H.; Stark, James R.; Hoard, Christopher J.; Smith, Erik A.

2007-01-01

Water-quality results from source-water samples were compared to characterize differences between aquifers. VOC and other AOC detections were more frequent in water from the Prairie du Chien-Jordan aquifer compared to the glacial aquifer. Pesticides, however, were detected more frequently in the glacial aquifer. On the basis of study results, the hydrogeologic setting, land use, and aquifer productivity are important in explaining the occurrence of AOCs in community water system wells. Results of this study indicate that monitoring for pesticides in source water generally indicates the potential occurrence of pesticides in finished water but that this is not necessarily true of VOCs. Additional monitoring is needed to better understand the occurrence of other AOCs in source and finished waters.

Imaging before cryoablation of atrial fibrillation: is phrenic nerve palsy predictable?

PubMed

Canpolat, Uğur; Aytemir, Kudret; Hızal, Mustafa; Hazırolan, Tuncay; Yorgun, Hikmet; Sahiner, Levent; Kaya, Ergun Barış; Oto, Ali

2014-04-01

Multidetector computerized tomography (MDCT) with improved temporal and spatial resolution is one of the most commonly used non-invasive tests for evaluation of pulmonary veins (PVs) and adjacent structures before cryoablation of atrial fibrillation (AF). Identification of spatial neighbouring of phrenic nerves is important to decrease likelihood of phrenic nerve palsy (PNP). The purpose of our study is to clarify the course of right phrenic nerve, its relations to PVs using 64-slice MDCT, and effect on occurrence of PNP. A total of 162 patients underwent MDCT with 3D reconstruction of left atrium prior to cryoablation for AF. The location of the right pericardiophrenic artery (RPA) was identified on axial images and artery distance to the right upper PV (RUPV) ostium was measured in 3D image. Right pericardiophrenic artery was detectable in 145 of 162 (89.5%) patients (52.4% male, age 54.5 ± 10.1 years, and 80.7% paroxysmal AF). Acute procedural success rate was 96.2%. Mean procedural and fluoroscopy times were 74.4 ± 6.2 and 15.7 ± 4.3 min. Transient right PNP was developed in four (2.75%) patients. RUPV ostium to RPA distance was lower in patients with PNP (P = 0.033). In multivariate regression analysis, only RUPV ostium to RPA distance (odds ratio: 2.95; 95% confidence interval: 1.76-4.66, P = 0.001) was the independent predictor of PNP occurrence during cryoablation. Our results revealed that pre-ablation cardiac imaging with 64-slice MDCT adequately detected RPA bordering the phrenic nerve, which was an important determinant of PNP development during cryoballoon-based AF ablation.

Reconnaissance of Organic Wastewater Compounds at a Concentrated Swine Feeding Operation in the North Carolina Coastal Plain, 2008

USGS Publications Warehouse

Harden, Stephen L.

2009-01-01

Water-quality and hydrologic data were collected during 2008 to examine the occurrence of organic wastewater compounds at a concentrated swine feeding operation located in the North Carolina Coastal Plain. Continuous groundwater level and stream-stage data were collected at one monitoring well and one stream site, respectively, throughout 2008. One round of environmental and quality-control samples was collected in September 2008 following a period of below-normal precipitation and when swine waste was not being applied to the spray fields. Samples were collected at one lagoon site, seven shallow groundwater sites, and one surface-water site for analysis of 111 organic wastewater compounds, including household, industrial, and agricultural-use compounds, sterols, pharmaceutical compounds, hormones, and antibiotics. Analytical data for environmental samples collected during the study provide preliminary information on the occurrence of organic wastewater compounds in the lagoon-waste source material, groundwater beneath fields that receive spray applications of the lagoon wastes, and surface water in the tributary adjacent to the site. Overall, 28 organic wastewater compounds were detected in the collected samples, including 11 household, industrial, and agricultural-use compounds; 3 sterols; 2 pharmaceutical compounds; 5 hormones; and 7 antibiotics. The lagoon sample had the greatest number (20) and highest concentrations of compounds compared to groundwater and surface-water samples. The antibiotic lincomycin had the maximum detected concentration (393 micrograms per liter) in the lagoon sample. Of the 11 compounds identified in the groundwater and surface-water samples, all with reported concentrations less than 1 microgram per liter, only lincomycin identified in groundwater at 1 well and 3-methyl-1H-indole and indole identified in surface water at 1 site also were identified in the lagoon waste material.

Occurrence of nonylphenol and nonylphenol monoethoxylate in soil and vegetables from vegetable farms in the Pearl River Delta, South China.

PubMed

Cai, Quan-Ying; Huang, Hui-Juan; Lü, Huixiong; Mo, Ce-Hui; Zhang, Jun; Zeng, Qiao-Yun; Tian, Jun-Jian; Li, Yan-Wen; Wu, Xiao-Lian

2012-07-01

Low molecular-mass nonylphenol ethoxylates (NPEOs) and 4-nonylphenol (NP) are biodegradation products of higher molecular mass NPEOs used as surface active agents, and they are endocrine-disrupting contaminants. In this study, surface soil (0-20 cm) samples and different vegetable samples were collected from 27 representative vegetable farms located in Shenzhen, Dongguan, and Huizhou within the Pearl River Delta region, South China, and NP and nonylphenol monoethoxylate (NP(1)EO) were analyzed using high-performance liquid chromatography with ultraviolet detection. The results show that NP and NP(1)EO were detected in soil and vegetable samples. The concentrations of NP and NP(1)EO in soil samples ranged from nondetectable (ND) to 7.22 μg kg(-1) dry weight (dw) and from ND to 8.24 μg kg(-1) dw, respectively. The average concentrations of both NP and NP(1)EO in soil samples decreased in the following order: Dongguan > Huizhou > Shenzhen. The levels of NP and NP(1)EO in vegetable samples varied from 1.11 to 4.73 μg kg(-1) dw and from 1.32 to 5.33 μg kg(-1) dw, respectively. The greatest levels of both NP and NP(1)EO were observed in water spinach, and the lowest levels of NP and NP(1)EO were recorded in cowpea. The bioconcentration factors (the ratio of contaminant concentration in plant tissue to soil concentration) of NP and NP(1)EO were <1.0 (mean 0.535 and 0.550, respectively). The occurrences of NP and NP(1)EO in this study are compared with other studies, and their potential sources are discussed.

The genomic architecture of mastitis resistance in dairy sheep.

PubMed

Banos, G; Bramis, G; Bush, S J; Clark, E L; McCulloch, M E B; Smith, J; Schulze, G; Arsenos, G; Hume, D A; Psifidi, A

2017-08-16

Mastitis is the most prevalent disease in dairy sheep with major economic, hygienic and welfare implications. The disease persists in all dairy sheep production systems despite the implementation of improved management practises. Selective breeding for enhanced mastitis resistance may provide the means to further control the disease. In the present study, we investigated the genetic architecture of four mastitis traits in dairy sheep. Individual animal records for clinical mastitis occurrence and three mastitis indicator traits (milk somatic cell count, total viable bacterial count in milk and the California mastitis test) were collected monthly throughout lactation for 609 ewes of the Greek Chios breed. All animals were genotyped with a custom-made 960-single nucleotide polymorphism (SNP) DNA array based on markers located in quantitative trait loci (QTL) regions for mastitis resistance previously detected in three other distinct dairy sheep populations. Heritable variation and strong positive genetic correlations were estimated for clinical mastitis occurrence and the three mastitis indicator traits. SNP markers significantly associated with these mastitis traits were confirmed on chromosomes 2, 3, 5, 16 and 19. We identified pathways, molecular interaction networks and functional gene clusters for mastitis resistance. Candidate genes within the detected regions were identified based upon analysis of an ovine transcriptional atlas and transcriptome data derived from milk somatic cells. Relevant candidate genes implicated in innate immunity included SOCS2, CTLA4, C6, C7, C9, PTGER4, DAB2, CARD6, OSMR, PLXNC1, IDH1, ICOS, FYB, and LYFR. The results confirmed the presence of animal genetic variability in mastitis resistance and identified genomic regions associated with specific mastitis traits in the Chios sheep. The conserved genetic architecture of mastitis resistance between distinct dairy sheep breeds suggests that across-breed selection programmes would be feasible.

Integrating occupancy models and structural equation models to understand species occurrence

PubMed Central

Joseph, Maxwell B.; Preston, Daniel L.; Johnson, Pieter T. J.

2016-01-01

Understanding the drivers of species occurrence is a fundamental goal in basic and applied ecology. Occupancy models have emerged as a popular approach for inferring species occurrence because they account for problems associated with imperfect detection in field surveys. Current models, however, are limited because they assume covariates are independent (i.e., indirect effects do not occur). Here, we combined structural equation and occupancy models to investigate complex influences on species occurrence while accounting for imperfect detection. These two methods are inherently compatible because they both provide means to make inference on latent or unobserved quantities based on observed data. Our models evaluated the direct and indirect roles of cattle grazing, water chemistry, vegetation, nonnative fishes, and pond permanence on the occurrence of six pond-breeding amphibians, two of which are threatened: the California tiger salamander (Ambystoma californiense), and the California red-legged frog (Rana draytonii). While cattle had strong effects on pond vegetation and water chemistry, their overall effects on amphibian occurrence were small compared to the consistently negative effects of nonnative fish. Fish strongly reduced occurrence probabilities for four of five native amphibians, including both species of conservation concern. These results could help to identify drivers of amphibian declines and to prioritize strategies for amphibian conservation. More generally, this approach facilitates a more mechanistic representation of ideas about the causes of species distributions in space and time. As shown here, occupancy modeling and structural equation modeling are readily combined, and bring rich sets of techniques that may provide unique theoretical and applied insights into basic ecological questions. PMID:27197402

Detection of rainfall-induced landslides on regional seismic networks

NASA Astrophysics Data System (ADS)

Manconi, Andrea; Coviello, Velio; Gariano, Stefano Luigi; Picozzi, Matteo

2017-04-01

Seismic techniques are increasingly adopted to detect signals induced by mass movements and to quantitatively evaluate geo-hydrological hazards at different spatial and temporal scales. By analyzing landslide-induced seismicity, it is possible obtaining significant information on the source of the mass wasting, as well as on its dynamics. However, currently only few studies have performed a systematic back analysis on comprehensive catalogues of events to evaluate the performance of proposed algorithms. In this work, we analyze a catalogue of 1058 landslides induced by rainfall in Italy. Among these phenomena, there are 234 rock falls, 55 debris flows, 54 mud flows, and 715 unspecified shallow landslides. This is a subset of a larger catalogue collected by the Italian research institute for geo-hydrological protection (CNR IRPI) during the period 2000-2014 (Brunetti et al., 2015). For each record, the following information are available: the type of landslide; the geographical location of the landslide (coordinates, site, municipality, province, and 3 classes of geographic accuracy); the temporal information on the landslide occurrence (day, month, year, time, date, and 3 classes of temporal accuracy); the rainfall conditions (rainfall duration and cumulated event rainfall) that have resulted in the landslide. We consider here only rainfall-induced landslides for which exact date and time were known from chronicle information. The analysis of coeval seismic data acquired by regional seismic networks show clear signals in at least 3 stations for 64 events (6% of the total dataset). Among them, 20 are associated to local earthquakes and 2 to teleseisms; 10 are anomalous signals characterized by irregular and impulsive waveforms in both time and frequency domains; 33 signals are likely associated to the landslide occurrence, as they have a cigar-shaped waveform characterized by emerging onsets, duration of several tens of seconds, and low frequencies (1-10 Hz). For this last category of events, we have applied the approach proposed in Manconi et al. (2016), in order to evaluate the performance of automatic identification, location and first order classification of landslide events trough seismic data only. Our analysis may provide important insights for the development and calibration of landslide identification algorithms, which might be used to enhance the completeness of landslide catalogues by relying on quantitative data. Brunetti, M.T., Peruccacci, S., Antronico, L., Bartolini, D., Deganutti, A.M., Gariano, S.L., Iovine, G., Luciani, S., Luino, F., Melillo, M., Palladino, M.R., Parise, M., Rossi, M., Turconi, L., Vennari, C., Vessia, G., Viero, A., and Guzzetti, F.: Catalogue of Rainfall Events with Shallow Landslides and New Rainfall thresholds in Italy, in Lollino G, Giordan D, Crosta G B, Corominas J, Azzam R, Wasowski J, Sciarra N (eds.), Engineering Geology for Society and Territory - Volume 2, Springer International Publishing, Switzerland, 1575-1579, 2015. Manconi, A., Picozzi, M., Coviello, V., De Santis, F., and Elia, L.: Real-time detection, location, and characterization of rockslides using broadband regional seismic networks, Geophys. Res. Lett., 43, 6960-6967, doi:10.1002/2016GL069572, 2016.

Using constrained information entropy to detect rare adverse drug reactions from medical forums.

PubMed

Yi Zheng; Chaowang Lan; Hui Peng; Jinyan Li

2016-08-01

Adverse drug reactions (ADRs) detection is critical to avoid malpractices yet challenging due to its uncertainty in pre-marketing review and the underreporting in post-marketing surveillance. To conquer this predicament, social media based ADRs detection methods have been proposed recently. However, existing researches are mostly co-occurrence based methods and face several issues, in particularly, leaving out the rare ADRs and unable to distinguish irrelevant ADRs. In this work, we introduce a constrained information entropy (CIE) method to solve these problems. CIE first recognizes the drug-related adverse reactions using a predefined keyword dictionary and then captures high- and low-frequency (rare) ADRs by information entropy. Extensive experiments on medical forums dataset demonstrate that CIE outperforms the state-of-the-art co-occurrence based methods, especially in rare ADRs detection.

Recurrent occurrences of CDKL5 mutations in patients with epileptic encephalopathy.

PubMed

Yamamoto, Toshiyuki; Shimojima, Keiko; Kimura, Nobusuke; Mogami, Yukiko; Usui, Daisuke; Takayama, Rumiko; Ikeda, Hiroko; Imai, Katsumi

2015-01-01

The cyclin-dependent kinase-like 5 gene (CDKL5) is recognized as one of the genes responsible for epileptic encephalopathy. We identified CDKL5 mutations in five Japanese patients (one male and four female) with epileptic encephalopathy. Although all mutations were of de novo origin, they were located in the same positions as previously reported pathogenic mutations. These recurrent occurrences of de novo mutations in the same loci may indicate hot spots of nucleotide alteration.

Analysis of Isentropic Transport in the Lower Tropical Stratosphere from Laminae Observed in Shadoz Ozone Profiles

NASA Astrophysics Data System (ADS)

Portafaix, T.; Bencherif, H.; Godin-Beekmann, S.; Begue, N.; Culot, A.

2014-12-01

The subtropical dynamical barrier located in the lower stratosphere on the edge of the Tropical Stratospheric Reservoir (TSR), controls and limits exchanges between tropical and extratropical lower stratosphere. The geographical position of stations located near from the edge of the Tropical Stratospheric Reservoir is interesting since they are regularly interested by air-mass filaments originated from TSR or mid-latitudes. During such filamentary events, profiles of chemical species are modified according to the origin and the height of the air mass. These perturbations called "laminae" are generally associated to quasi-horizontal transport events. Many SHADOZ (Southern Hemisphere ADditional OZonesondes) stations from all around the southern tropics were selected in order to study the variability of laminae. Profiles from ozonesondes were analyzed to detect laminae using a statistical standard deviation method from the climatology. Time series of laminae were investigated by a multilinear regression model in order to estimate the influence of several proxy on laminae variability from 1998 to 2013. Different forcings such as QBO, ENSO or IOD were applied. The first objective is to better quantify isentropic transport as function of the station location and the influence of the QBO on the laminae occurrences. Finally, cases studies were conducted from high-resolution advection model MIMOSA. These allow us to identify the air mass origin and to highlight privileged roads where meridional transport occurs between tropics and midlatitudes.

Preliminary Analysis of IR Cloudtop Temperatures of Sprite Producing Storms over Argentina Observed from Brazil, and Comparison with US Case Study

NASA Astrophysics Data System (ADS)

Sao Sabbas, F. T.; Pautet, P.; Taylor, M. J.; Pinto, O.; Thomas, J.; Solorzano, N.; Holzworth, R.; Bailey, M.; Schuch, N.; Michels, M.

2006-12-01

We will present the preliminary results of the cloudtop temperature characteristics of two very active sprite- producing Mesoscale Convective System (MCS) which occurred over Argentina in the evening of February 22, and March 04, 2006. These were prolific storms, e.g. the first one produced more than 400 TLEs, including sprites, halos and possibly elves. The events were observed from the INPE Observatorio Espacial Sul-OES (Southern Space Observatory), located at the center of Rio Grande do Sul State, the most Southern State of Brazil. Except for the lack of triangulated locations for the sprites and halos recorded, the methodology used for this study is the same as for the paper Sao Sabbas and Sentman [2003], where a sprite producing storm over the central U.S. was observed during the night of July 22, 1996. We analyzed the IR satellite data provided by GOES-12 and the lightning information from the Brazilian Lightning Detection Network in combination with data from the World Wide Lightning Location Network WWLLN. We will also show a comparison between the obtained results and the results presented at the Sao Sabbas and Sentman [2003] paper. Sao Sabbas, F.T. and D. D. Sentman, Dynamical Relationship of IR Cloudtop Temperatures With Occurrence Rates of Cloud-to-Ground Lightning and Sprites, Geophys. Res. Lett., 30 (5), 40-1-40-4, 2003.

LINE-1 retrotransposons: from 'parasite' sequences to functional elements.

PubMed

Paço, Ana; Adega, Filomena; Chaves, Raquel

2015-02-01

Long interspersed nuclear elements-1 (LINE-1) are the most abundant and active retrotransposons in the mammalian genomes. Traditionally, the occurrence of LINE-1 sequences in the genome of mammals has been explained by the selfish DNA hypothesis. Nevertheless, recently, it has also been argued that these sequences could play important roles in these genomes, as in the regulation of gene expression, genome modelling and X-chromosome inactivation. The non-random chromosomal distribution is a striking feature of these retroelements that somehow reflects its functionality. In the present study, we have isolated and analysed a fraction of the open reading frame 2 (ORF2) LINE-1 sequence from three rodent species, Cricetus cricetus, Peromyscus eremicus and Praomys tullbergi. Physical mapping of the isolated sequences revealed an interspersed longitudinal AT pattern of distribution along all the chromosomes of the complement in the three genomes. A detailed analysis shows that these sequences are preferentially located in the euchromatic regions, although some signals could be detected in the heterochromatin. In addition, a coincidence between the location of imprinted gene regions (as Xist and Tsix gene regions) and the LINE-1 retroelements was also observed. According to these results, we propose an involvement of LINE-1 sequences in different genomic events as gene imprinting, X-chromosome inactivation and evolution of repetitive sequences located at the heterochromatic regions (e.g. satellite DNA sequences) of the rodents' genomes analysed.

Passive detection of subpixel obstacles for flight safety

NASA Astrophysics Data System (ADS)

Nixon, Matthew D.; Loveland, Rohan C.

2001-12-01

Military aircraft fly below 100 ft. above ground level in support of their missions. These aircraft include fixed and rotary wing and may be manned or unmanned. Flying at these low altitudes presents a safety hazard to the aircrew and aircraft, due to the occurrences of obstacles within the aircraft's flight path. The pilot must rely on eyesight and in some cases, infrared sensors to see obstacles. Many conditions can exacerbate visibility creating a situation in which obstacles are essentially invisible, creating a safety hazard, even to an alerted aircrew. Numerous catastrophic accidents have occurred in which aircraft have collided with undetected obstacles. Accidents of this type continue to be a problem for low flying military and commercial aircraft. Unmanned Aerial Vehicles (UAVs) have the same problem, whether operating autonomously or under control of a ground operator. Boeing-SVS has designed a passive, small, low- cost (under $100k) gimbaled, infrared imaging based system with advanced obstacle detection algorithms. Obstacles are detected in the infrared band, and linear features are analyzed by innovative cellular automata based software. These algorithms perform detection and location of sub-pixel linear features. The detection of the obstacles is performed on a frame by frame basis, in real time. Processed images are presented to the aircrew on their display as color enhanced features. The system has been designed such that the detected obstacles are displayed to the aircrew in sufficient time to react and maneuver the aircraft to safety. A patent for this system is on file with the US patent office, and all material herein should be treated accordingly.

Data set of world phosphate mines, deposits, and occurrences: Part A. geologic data; Part B. location and mineral economic data

USGS Publications Warehouse

Chernoff, Carlotta B.; Orris, G.J.

2002-01-01

An inventory of more than 1,600 world phosphate mines, deposits, and occurrences was compiled from smaller data sets collected as part of multiple research efforts by Carlotta Chernoff, University of Arizona, and Greta Orris, U.S. Geological Survey. These data have been utilized during studies of black shale depositional environments and to construct phosphate deposit models. The compiled data have been edited for consistency and additional location information has been added where possible. The database of compiled phosphate information is being released in two sections; the geologic data in one section and the location and mineral economic data in the second. This report, U.S. Geological Survey Open-File Report 02–156–A, contains the geologic data and is best used with the complimentary data contained in Open-File Report 02–156–B. U.S. Geological Survey Open-File Report 02–156–B contains commodity data, location and analytical data, a variety of mineral economic data, reference information, and pointers to related records in the U.S. Geological Survey National mineral databases—MASMILS and MRDS.

High-resolution seismicity catalog of Italian peninsula in the period 1981-2015

NASA Astrophysics Data System (ADS)

Michele, M.; Latorre, D.; Castello, B.; Di Stefano, R.; Chiaraluce, L.

2017-12-01

In order to provide an updated reference catalog of Italian seismicity, the absolute location of the last 35 years (1981-2015) of seismic activity was computed with a three-dimensional VP and VS velocity model covering the whole Italian territory. The NonLinLoc code (Lomax et al., 2000), which is based on a probabilistic approach, was used to provide a complete and robust description of the uncertainties associated to the locations corresponding to the hypocentral solutions with the highest probability density. Moreover, the code using a finite difference approximation of the eikonal equation (Podvin and Lecomte, 1991), allows to manage very contrasted velocity models in the arrival time computation. To optimize the earthquakes location, we included the station corrections in the inverse problem. For each year, the number of available earthquakes depends on both the network detection capability and the occurrence of major seismic sequences. The starting earthquakes catalog was based on 2.6 million P and 1.9 million S arrival time picks for 278.607 selected earthquakes, recorded at least by 3 seismic stations of the Italian seismic network. The new catalog compared to the previous ones consisting of hypocentral locations retrieved with linearized location methods, shows a very good improvement as testified by the location parameters assessing the quality of the solution (i.e., RMS, azimuthal gap, formal error on horizontal and vertical components). In addition, we used the distance between the expected and the maximum likelihood hypocenter location to establish the unimodal (high-resolved location) or multimodal (poor-resolved location) character of the probability distribution. We used these parameters to classify the resulting locations in four classes (A, B, C and D) considering the simultaneous goodness of the previous parameters. The upper classes (A and B) include the 65% of the relocated earthquake, while the lowest class (D) only includes the 7% of the seismicity. We present the new catalog, consisting of 272.847 events, showing some example of earthquakes location related to the background as well as small to large seismic sequences occurred in Italy the last 35 years.

Application of portfolio theory to risk-based allocation of surveillance resources in animal populations.

PubMed

Prattley, D J; Morris, R S; Stevenson, M A; Thornton, R

2007-09-14

Distribution of finite levels of resources between multiple competing tasks can be a challenging problem. Resources need to be distributed across time periods and geographic locations to increase the probability of detection of a disease incursion or significant change in disease pattern. Efforts should focus primarily on areas and populations where risk factors for a given disease reach relatively high levels. In order to target resources into these areas, the overall risk level can be evaluated periodically across locations to create a dynamic national risk landscape. Methods are described to integrate the levels of various risk factors into an overall risk score for each area, to account for the certainty or variability around those measures and then to allocate surveillance resources across this risk landscape. In addition to targeting resources into high risk areas, surveillance continues in lower risk areas where there is a small yet positive chance of disease occurrence. In this paper we describe the application of portfolio theory concepts, routinely used in finance, to design surveillance portfolios for a series of examples. The appropriate level of resource investment is chosen for each disease or geographical area and time period given the degree of disease risk and uncertainty present.

Temporal variation of tectonic tremor activity in southern Taiwan around the 2010 ML6.4 Jiashian earthquake

NASA Astrophysics Data System (ADS)

Chao, Kevin; Peng, Zhigang; Hsu, Ya-Ju; Obara, Kazushige; Wu, Chunquan; Ching, Kuo-En; van der Lee, Suzan; Pu, Hsin-Chieh; Leu, Peih-Lin; Wech, Aaron

2017-07-01

Deep tectonic tremor, which is extremely sensitive to small stress variations, could be used to monitor fault zone processes during large earthquake cycles and aseismic processes before large earthquakes. In this study, we develop an algorithm for the automatic detection and location of tectonic tremor beneath the southern Central Range of Taiwan and examine the spatiotemporal relationship between tremor and the 4 March 2010 ML6.4 Jiashian earthquake, located about 20 km from active tremor sources. We find that tremor in this region has a relatively short duration, short recurrence time, and no consistent correlation with surface GPS data. We find a short-term increase in the tremor rate 19 days before the Jiashian main shock, and around the time when the tremor rate began to rise one GPS station recorded a flip in its direction of motion. We hypothesize that tremor is driven by a slow-slip event that preceded the occurrence of the shallower Jiashian main shock, even though the inferred slip is too small to be observed by all GPS stations. Our study shows that tectonic tremor may reflect stress variation during the prenucleation process of a nearby earthquake.

Source Region Identification for Low Latitude Whistlers (L=1.08)

NASA Astrophysics Data System (ADS)

Gokani, S. A.; Singh, R.; Maurya, A. K.; Bhaskara, V.; Cohen, M.; Kumar, S.; Lichtenberger, J.

2014-12-01

Though whistlers are known and studied from past one century, the scientific community still strives to understand the generation and propagation mechanism of whistlers in very low latitude region. One of the solutions comes from locating the causative lightning discharges and source region of low latitude whistlers. In the present study, ~ 2000 whistlers recorded during period of one year (Dec, 2010 to Jan, 2011) at Allahabad (Geomag. lat. 16.79o N; L=1.08), India are correlated with lightning activity detected by World Wide Lightning Location Network (WWLLN) at and around conjugate region. About 63% of whistlers are correlated with the lightning strikes around conjugate region. Further to confirm this correlation, arrival azimuths of causative sferics are determined and the obtained azimuths points towards conjugate region of Allahabad. The characteristics of thunder cloud generating these whistlers are examined and found that the clouds with South-East alignment are more prone to trigger whistler waves. The seasonal and diurnal variation of whistler parameters such as occurrence rate, power spectral density and dispersion are also studied and explained on the basis of ionospheric conditions in low latitudes. The results obtained open a new window to look for the propagation mechanism of low latitude whistlers.

Occurrence, seasonal variation and risk assessment of antibiotics in the reservoirs in North China.

PubMed

Li, Nan; Zhang, Xinbo; Wu, Wei; Zhao, Xinhua

2014-09-01

The occurrence and seasonal variability of five groups (tetracycline, quinolone, chloramphenicol, macrolide and sulfonamide) of antibiotics were investigated in the surface water of four reservoirs. The dissolved concentrations of 29 antibiotics were in the ngL(-1) level. Trace levels of all target antibiotics were analyzed using solid-phase extraction followed by liquid chromatography electrospray tandem mass spectrometry. All of the antibiotics were detected at all sampling sites, indicating widespread occurrence of antibiotics in the study area. The detection of florfenicol, josamycin, kitasamycin, spiramycin and sulfameter is the first report of these compounds in reservoir samples. The results showed an association between the presence of some antibiotics at Panjiakou reservoir and cage culture of fish. Twenty-three types of antibiotics showed significant seasonal variations (p<0.001) due to human activities and flow conditions. A risk assessment showed that all antibiotics detected could cause very low risk to algae, daphnid and fish. Further health risk need to be investigated because these reservoirs are drinking water sources. Copyright © 2014 Elsevier Ltd. All rights reserved.

Toxicology and detection methods of the alkaloid neurotoxin produced by cyanobacteria, anatoxin-a.

PubMed

Osswald, Joana; Rellán, Sandra; Gago, Ana; Vasconcelos, Vitor

2007-11-01

Freshwater resources are under stress due to naturally occurring conditions and human impacts. One of the consequences is the proliferation of cyanobacteria, microphytoplankton organisms that are capable to produce toxins called cyanotoxins. Anatoxin-a is one of the main cyanotoxins. It is a very potent neurotoxin that was already responsible for some animal fatalities. In this review we endeavor to divulgate much of the internationally published information about toxicology, occurrence and detection methods of anatoxin-a. Cyanobacteria generalities, anatoxin-a occurrence and production as well as anatoxin-a toxicology and its methods of detection are the aspects focused in this review. Remediation of anatoxin-a occurrence will be addressed with a public health perspective. Final remarks call the attention for some important gaps in the knowledge about this neurotoxin and its implication to public health. Alterations of aquatic ecosystems caused by anatoxin-a is also addressed. Although anatoxin-a is not the more frequent cyanotoxin worldwide, it has to be regarded as a health risk that can be fatal to terrestrial and aquatic organisms because of its high toxicity.