Estimating metallicities with isochrone fits to photometric data of open clusters

NASA Astrophysics Data System (ADS)

Monteiro, H.; Oliveira, A. F.; Dias, W. S.; Caetano, T. C.

2014-10-01

The metallicity is a critical parameter that affects the correct determination of stellar cluster's fundamental characteristics and has important implications in Galactic and Stellar evolution research. Fewer than 10% of the 2174 currently catalogued open clusters have their metallicity determined in the literature. In this work we present a method for estimating the metallicity of open clusters via non-subjective isochrone fitting using the cross-entropy global optimization algorithm applied to UBV photometric data. The free parameters distance, reddening, age, and metallicity are simultaneously determined by the fitting method. The fitting procedure uses weights for the observational data based on the estimation of membership likelihood for each star, which considers the observational magnitude limit, the density profile of stars as a function of radius from the center of the cluster, and the density of stars in multi-dimensional magnitude space. We present results of [Fe/H] for well-studied open clusters based on distinct UBV data sets. The [Fe/H] values obtained in the ten cases for which spectroscopic determinations were available in the literature agree, indicating that our method provides a good alternative to estimating [Fe/H] by using an objective isochrone fitting. Our results show that the typical precision is about 0.1 dex.

Experiences Using OpenMP Based on Compiler Directed Software DSM on a PC Cluster

NASA Technical Reports Server (NTRS)

Hess, Matthias; Jost, Gabriele; Mueller, Matthias; Ruehle, Roland; Biegel, Bryan (Technical Monitor)

2002-01-01

In this work we report on our experiences running OpenMP (message passing) programs on a commodity cluster of PCs (personal computers) running a software distributed shared memory (DSM) system. We describe our test environment and report on the performance of a subset of the NAS (NASA Advanced Supercomputing) Parallel Benchmarks that have been automatically parallelized for OpenMP. We compare the performance of the OpenMP implementations with that of their message passing counterparts and discuss performance differences.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kim, Junghyun; Gangwon, Jo; Jaehoon, Jung

Applications written solely in OpenCL or CUDA cannot execute on a cluster as a whole. Most previous approaches that extend these programming models to clusters are based on a common idea: designating a centralized host node and coordinating the other nodes with the host for computation. However, the centralized host node is a serious performance bottleneck when the number of nodes is large. In this paper, we propose a scalable and distributed OpenCL framework called SnuCL-D for large-scale clusters. SnuCL-D's remote device virtualization provides an OpenCL application with an illusion that all compute devices in a cluster are confined inmore » a single node. To reduce the amount of control-message and data communication between nodes, SnuCL-D replicates the OpenCL host program execution and data in each node. We also propose a new OpenCL host API function and a queueing optimization technique that significantly reduce the overhead incurred by the previous centralized approaches. To show the effectiveness of SnuCL-D, we evaluate SnuCL-D with a microbenchmark and eleven benchmark applications on a large-scale CPU cluster and a medium-scale GPU cluster.« less

Study of Intermediate Age (~10-30 Myr) Open Clusters

NASA Astrophysics Data System (ADS)

Olguin, Lorenzo; Michel, Raul; Contreras, Maria; Hernandez, Jesus; Schuster, William; Chavarria-Kleinhenn, Carlos

2013-07-01

We present the study of a sample of intermediate age open clusters (age ~ 10-30 Myr) using optical (UBVRI) and infrared photometric data. Optical photometry was obtained as part of the San Pedro Martir Open Clusters Project (SPM-OCP, Schuster et al. 2007; Michel et al. 2013). Infrared photometry was retrieved from 2MASS public data archive and WISE database. Open clusters included in the SPM-OCP were selected from catalogues presented by Dias et al. (2002) and Froebrich, Scholz & Raftery (2007). One of the main goals of the SPM-OCP is to compile a self-consistent and homogeneous set of cluster fundamental parameters such as reddening, distance, age, and metallicity whenever possible. In this work, we have analyzed a set of 25 clusters from the SPM-OCP with estimated ages between 10 and 30 Myr. Derived fundamental parameters for each cluster in the sample as well as an example of typical color-color and color-magnitude diagrams are presented. Kinematic membership was established by using proper motion data taken from the literature. Based on infrared photometry, we have searched for candidate stars to posses a circumstellar disk within each clusters. For those selected candidates a follow-up spectroscpic study is being carried out. This work was partially supported by UNAM-PAPIIT grant IN-109311.

Mass-losing red giants in open clusters

NASA Technical Reports Server (NTRS)

Jura, M.

1987-01-01

Mass-losing stars in open clusters with main-sequence turn-offs at intermediate mass have been searched for by using the IRAS data base. The absence of many strong 60 micron sources in open clusters implies that intermediate-mass stars lose much of their mass during an intense wind phase of rather short duration. For stars of about seven solar masses, this phase, if it exists at all, lasts for not much more than 100,000 yr. For stars of about four solar masses, the intense wind phase appears to last considerably less than 10 million yr; it may well last for less than a million yr.

Reddening and age for 13 southern Galactic open clusters determined from integrated spectra

NASA Astrophysics Data System (ADS)

Ahumada, A. V.; Clariá, J. J.; Bica, E.; Dutra, C. M.; Torres, M. C.

2001-10-01

In this study we present flux-calibrated integrated spectra in the range 3800-6800 Å for 13 concentrated open clusters with Galactic longitudes between 219deg and 316deg, nine of which have not been previously studied. Using the equivalent widths of the Balmer lines and comparing the cluster spectra with template spectra of Magellanic Clouds and Galactic star clusters with known parameters, we derive both foreground interstellar reddening values and age. For nine clusters these two parameters have been determined for the first time, while for the rest of the sample the results show good agreement with previous studies. The present analysis indicates four very young (Hogg 11, NGC 5606, vdB-RN 80 and Pismis 17), seven moderately young (ESO 429-SC13, Hogg 3, Hogg 12, Haffner 7, BH 87, NGC 2368 and Bochum 12) and two intermediate-age (Berkeley 75 and NGC 2635) open clusters. The derived foreground interstellar reddening values are in the range 0.00 <= E(B-V) <= 0.38. The age and reddening distributions of the present sample of relatively faint open clusters match those of open clusters with known parameters in a 90deg sector centered at l = 270deg. Based on observations made at Complejo Astronómico El Leoncito, which is operated under agreement between the Consejo Nacional de Investigaciones Científicas y Técnicas de la República Argentina and the National Universities of La Plata, Córdoba and San Juan, Argentina.

The old open cluster NGC 2112: updated estimates of fundamental parameters based on a membership analysis†

NASA Astrophysics Data System (ADS)

Carraro, G.; Villanova, S.; Demarque, P.; Moni Bidin, C.; McSwain, M. V.

2008-05-01

We report on a new, wide-field (20 × 20 arcmin2), multicolour (UBVI), photometric campaign in the area of the nearby old open cluster NGC 2112. At the same time, we provide medium-resolution spectroscopy of 35 (and high-resolution of additional 5) red giant and turn-off stars. This material is analysed with the aim to update the fundamental parameters of this traditionally difficult cluster, which is very sparse and suffers from heavy field star contamination. Among the 40 stars with spectra, we identified 21 bona fide radial velocity members which allow us to put more solid constraints on the cluster's metal abundance, long suggested to be as low as the metallicity of globulars. As indicated earlier by us on a purely photometric basis, the cluster [Fe/H] abundance is slightly supersolar ([Fe/H] = 0.16 +/- 0.03) and close to the Hyades value, as inferred from a detailed abundance analysis of three of the five stars with higher resolution spectra. Abundance ratios are also marginally supersolar. Based on this result, we revise the properties of NGC 2112 using stellar models from the Padova and Yale-Yonsei groups. For this metal abundance, we find that the cluster's age, reddening and distance values are 1.8 Gyr, 0.60 mag and 940 pc, respectively. Both the Yale-Yonsei and Padova models predict the same values for the fundamental parameters within the errors. Overall, NGC 2112 is a typical solar neighbourhood, thin-disc star cluster, sharing the same chemical properties of F-G stars and open clusters close to the Sun. This investigation outlines the importance of a detailed membership analysis in the study of disc star clusters. This paper includes data gathered with the 6.5 Magellan Telescopes, located at Las Campanas Observatory, Chile. The data discussed in this paper will be made available at the WEBDA open cluster data base http://www.univie.ac.at/webda, which is maintained by E. Paunzen and J.-C. Mermilliod. ‡ E-mail: gcarraro@eso.org (GC); sandro.villanova@unipd.it (SV); demarque@astro.yale.edu (PD); mbidin@das.uchile.cl (CMB); mcswain@lehigh.edu(MVM)

Fault-tolerant measurement-based quantum computing with continuous-variable cluster states.

PubMed

Menicucci, Nicolas C

2014-03-28

A long-standing open question about Gaussian continuous-variable cluster states is whether they enable fault-tolerant measurement-based quantum computation. The answer is yes. Initial squeezing in the cluster above a threshold value of 20.5 dB ensures that errors from finite squeezing acting on encoded qubits are below the fault-tolerance threshold of known qubit-based error-correcting codes. By concatenating with one of these codes and using ancilla-based error correction, fault-tolerant measurement-based quantum computation of theoretically indefinite length is possible with finitely squeezed cluster states.

Investigating the usefulness of a cluster-based trend analysis to detect visual field progression in patients with open-angle glaucoma.

PubMed

Aoki, Shuichiro; Murata, Hiroshi; Fujino, Yuri; Matsuura, Masato; Miki, Atsuya; Tanito, Masaki; Mizoue, Shiro; Mori, Kazuhiko; Suzuki, Katsuyoshi; Yamashita, Takehiro; Kashiwagi, Kenji; Hirasawa, Kazunori; Shoji, Nobuyuki; Asaoka, Ryo

2017-12-01

To investigate the usefulness of the Octopus (Haag-Streit) EyeSuite's cluster trend analysis in glaucoma. Ten visual fields (VFs) with the Humphrey Field Analyzer (Carl Zeiss Meditec), spanning 7.7 years on average were obtained from 728 eyes of 475 primary open angle glaucoma patients. Mean total deviation (mTD) trend analysis and EyeSuite's cluster trend analysis were performed on various series of VFs (from 1st to 10th: VF1-10 to 6th to 10th: VF6-10). The results of the cluster-based trend analysis, based on different lengths of VF series, were compared against mTD trend analysis. Cluster-based trend analysis and mTD trend analysis results were significantly associated in all clusters and with all lengths of VF series. Between 21.2% and 45.9% (depending on VF series length and location) of clusters were deemed to progress when the mTD trend analysis suggested no progression. On the other hand, 4.8% of eyes were observed to progress using the mTD trend analysis when cluster trend analysis suggested no progression in any two (or more) clusters. Whole field trend analysis can miss local VF progression. Cluster trend analysis appears as robust as mTD trend analysis and useful to assess both sectorial and whole field progression. Cluster-based trend analyses, in particular the definition of two or more progressing cluster, may help clinicians to detect glaucomatous progression in a timelier manner than using a whole field trend analysis, without significantly compromising specificity. © Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2017. All rights reserved. No commercial use is permitted unless otherwise expressly granted.

TOSCA-based orchestration of complex clusters at the IaaS level

NASA Astrophysics Data System (ADS)

Caballer, M.; Donvito, G.; Moltó, G.; Rocha, R.; Velten, M.

2017-10-01

This paper describes the adoption and extension of the TOSCA standard by the INDIGO-DataCloud project for the definition and deployment of complex computing clusters together with the required support in both OpenStack and OpenNebula, carried out in close collaboration with industry partners such as IBM. Two examples of these clusters are described in this paper, the definition of an elastic computing cluster to support the Galaxy bioinformatics application where the nodes are dynamically added and removed from the cluster to adapt to the workload, and the definition of an scalable Apache Mesos cluster for the execution of batch jobs and support for long-running services. The coupling of TOSCA with Ansible Roles to perform automated installation has resulted in the definition of high-level, deterministic templates to provision complex computing clusters across different Cloud sites.

Map-based trigonometric parallaxes of open clusters: Coma

NASA Technical Reports Server (NTRS)

Gatewood, George

1995-01-01

This is the fourth study in a series to determine the direct trigonometric parallaxes of four of the nearest open star clusters, the Hyades, the Pleiades, the Praesepe, and the nearby cluster in Coma (Gatewood et al. 1990; Gatewood et al. 1992); Gatewood & Kiewiet de Jonge 1994). The results for the open star cluster in Coma are compared with those of the other three clusters, and the members are found to be significantly subluminous. The trigonometric parallax of the cluster is estimated from that of three members studied with the Multichannel Astrometric Photometer (MAP) at the Thaw Refractor of the University of Pittsburgh's Allegheny Observatory. The weighted mean parallax of the cluster is +13.53 +/- 0.54 mass (0.00054 min), corresponding to a distance modulus of 4.34 +/- 0.09 mag. The U-B excess of the Coma cluster members may be used to adjust the observed absolute magnitudes and the B-V measurements as suggested by Sandage & Eggen (1959). The agreement obtained in this manner suggests that, like subdwarf stars, the stars of the Coma cluster appear subluminous because of line blanketing. One of the three members observed in this study was recognized as a member by its parallax and is the faintest known member of the cluster.

Map-based trigonometric parallaxes of open clusters: Coma

NASA Astrophysics Data System (ADS)

Gatewood, George

1995-06-01

This is the fourth study in a series to determine the direct trigonometric parallaxes of four of the nearest open star clusters, the Hyades, the Pleiades, the Praesepe, and the nearby cluster in Coma (Gatewood et al. 1990; Gatewood et al. 1992); Gatewood & Kiewiet de Jonge 1994). The results for the open star cluster in Coma are compared with those of the other three clusters, and the members are found to be significantly subluminous. The trigonometric parallax of the cluster is estimated from that of three members studied with the Multichannel Astrometric Photometer (MAP) at the Thaw Refractor of the University of Pittsburgh's Allegheny Observatory. The weighted mean parallax of the cluster is +13.53 +/- 0.54 mass (0.00054 min), corresponding to a distance modulus of 4.34 +/- 0.09 mag. The U-B excess of the Coma cluster members may be used to adjust the observed absolute magnitudes and the B-V measurements as suggested by Sandage & Eggen (1959). The agreement obtained in this manner suggests that, like subdwarf stars, the stars of the Coma cluster appear subluminous because of line blanketing. One of the three members observed in this study was recognized as a member by its parallax and is the faintest known member of the cluster.

Development of New Open-Shell Perturbation and Coupled-Cluster Theories Based on Symmetric Spin Orbitals

NASA Technical Reports Server (NTRS)

Lee, Timothy J.; Arnold, James O. (Technical Monitor)

1994-01-01

A new spin orbital basis is employed in the development of efficient open-shell coupled-cluster and perturbation theories that are based on a restricted Hartree-Fock (RHF) reference function. The spin orbital basis differs from the standard one in the spin functions that are associated with the singly occupied spatial orbital. The occupied orbital (in the spin orbital basis) is assigned the delta(+) = 1/square root of 2(alpha+Beta) spin function while the unoccupied orbital is assigned the delta(-) = 1/square root of 2(alpha-Beta) spin function. The doubly occupied and unoccupied orbitals (in the reference function) are assigned the standard alpha and Beta spin functions. The coupled-cluster and perturbation theory wave functions based on this set of "symmetric spin orbitals" exhibit much more symmetry than those based on the standard spin orbital basis. This, together with interacting space arguments, leads to a dramatic reduction in the computational cost for both coupled-cluster and perturbation theory. Additionally, perturbation theory based on "symmetric spin orbitals" obeys Brillouin's theorem provided that spin and spatial excitations are both considered. Other properties of the coupled-cluster and perturbation theory wave functions and models will be discussed.

Data mining in the young open cluster IC2391

NASA Astrophysics Data System (ADS)

Dodd, R. J.

2004-12-01

Large-scale astrometric and photometric data bases have been used to search for and confirm stellar membership of the open cluster IC2391. 125 stars were found that satisfied criteria for membership based on proper motion components and BRI photometry from the United States Naval Observatory B (USNO-B) catalogue and JHK photometry from the Two Micron All Sky Survey (2MASS) catalogue. This listing was compared with others recently published. A distance to the cluster of 147.7 +/- 5.5 pc was found with mean proper motion components, from the Tycho2 catalogue of (-25.04 +/- 1.53 masyr-1+23.19+/-1.23 masyr-1). A revised Trumpler classification of II3r is suggested. Luminosity and mass functions for the candidate stars were constructed and compared with those of field stars and other clusters.

Open-Source Sequence Clustering Methods Improve the State Of the Art.

PubMed

Kopylova, Evguenia; Navas-Molina, Jose A; Mercier, Céline; Xu, Zhenjiang Zech; Mahé, Frédéric; He, Yan; Zhou, Hong-Wei; Rognes, Torbjørn; Caporaso, J Gregory; Knight, Rob

2016-01-01

Sequence clustering is a common early step in amplicon-based microbial community analysis, when raw sequencing reads are clustered into operational taxonomic units (OTUs) to reduce the run time of subsequent analysis steps. Here, we evaluated the performance of recently released state-of-the-art open-source clustering software products, namely, OTUCLUST, Swarm, SUMACLUST, and SortMeRNA, against current principal options (UCLUST and USEARCH) in QIIME, hierarchical clustering methods in mothur, and USEARCH's most recent clustering algorithm, UPARSE. All the latest open-source tools showed promising results, reporting up to 60% fewer spurious OTUs than UCLUST, indicating that the underlying clustering algorithm can vastly reduce the number of these derived OTUs. Furthermore, we observed that stringent quality filtering, such as is done in UPARSE, can cause a significant underestimation of species abundance and diversity, leading to incorrect biological results. Swarm, SUMACLUST, and SortMeRNA have been included in the QIIME 1.9.0 release. IMPORTANCE Massive collections of next-generation sequencing data call for fast, accurate, and easily accessible bioinformatics algorithms to perform sequence clustering. A comprehensive benchmark is presented, including open-source tools and the popular USEARCH suite. Simulated, mock, and environmental communities were used to analyze sensitivity, selectivity, species diversity (alpha and beta), and taxonomic composition. The results demonstrate that recent clustering algorithms can significantly improve accuracy and preserve estimated diversity without the application of aggressive filtering. Moreover, these tools are all open source, apply multiple levels of multithreading, and scale to the demands of modern next-generation sequencing data, which is essential for the analysis of massive multidisciplinary studies such as the Earth Microbiome Project (EMP) (J. A. Gilbert, J. K. Jansson, and R. Knight, BMC Biol 12:69, 2014, http://dx.doi.org/10.1186/s12915-014-0069-1).

Parameters of oscillation generation regions in open star cluster models

NASA Astrophysics Data System (ADS)

Danilov, V. M.; Putkov, S. I.

2017-07-01

We determine the masses and radii of central regions of open star cluster (OCL) models with small or zero entropy production and estimate the masses of oscillation generation regions in clustermodels based on the data of the phase-space coordinates of stars. The radii of such regions are close to the core radii of the OCL models. We develop a new method for estimating the total OCL masses based on the cluster core mass, the cluster and cluster core radii, and radial distribution of stars. This method yields estimates of dynamical masses of Pleiades, Praesepe, and M67, which agree well with the estimates of the total masses of the corresponding clusters based on proper motions and spectroscopic data for cluster stars.We construct the spectra and dispersion curves of the oscillations of the field of azimuthal velocities v φ in OCL models. Weak, low-amplitude unstable oscillations of v φ develop in cluster models near the cluster core boundary, and weak damped oscillations of v φ often develop at frequencies close to the frequencies of more powerful oscillations, which may reduce the non-stationarity degree in OCL models. We determine the number and parameters of such oscillations near the cores boundaries of cluster models. Such oscillations points to the possible role that gradient instability near the core of cluster models plays in the decrease of the mass of the oscillation generation regions and production of entropy in the cores of OCL models with massive extended cores.

The Gaia-ESO Survey: Probes of the inner disk abundance gradient

NASA Astrophysics Data System (ADS)

Jacobson, H. R.; Friel, E. D.; Jílková, L.; Magrini, L.; Bragaglia, A.; Vallenari, A.; Tosi, M.; Randich, S.; Donati, P.; Cantat-Gaudin, T.; Sordo, R.; Smiljanic, R.; Overbeek, J. C.; Carraro, G.; Tautvaišienė, G.; San Roman, I.; Villanova, S.; Geisler, D.; Muñoz, C.; Jiménez-Esteban, F.; Tang, B.; Gilmore, G.; Alfaro, E. J.; Bensby, T.; Flaccomio, E.; Koposov, S. E.; Korn, A. J.; Pancino, E.; Recio-Blanco, A.; Casey, A. R.; Costado, M. T.; Franciosini, E.; Heiter, U.; Hill, V.; Hourihane, A.; Lardo, C.; de Laverny, P.; Lewis, J.; Monaco, L.; Morbidelli, L.; Sacco, G. G.; Sousa, S. G.; Worley, C. C.; Zaggia, S.

2016-06-01

Context. The nature of the metallicity gradient inside the solar circle (RGC < 8 kpc) is poorly understood, but studies of Cepheids and a small sample of open clusters suggest that it steepens in the inner disk. Aims: We investigate the metallicity gradient of the inner disk using a sample of inner disk open clusters that is three times larger than has previously been studied in the literature to better characterize the gradient in this part of the disk. Methods: We used the Gaia-ESO Survey (GES) [Fe/H] values and stellar parameters for stars in 12 open clusters in the inner disk from GES-UVES data. Cluster mean [Fe/H] values were determined based on a membership analysis for each cluster. Where necessary, distances and ages to clusters were determined via comparison to theoretical isochrones. Results: The GES open clusters exhibit a radial metallicity gradient of -0.10 ± 0.02 dex kpc-1, consistent with the gradient measured by other literature studies of field red giant stars and open clusters in the range RGC ~ 6-12 kpc. We also measure a trend of increasing [Fe/H] with increasing cluster age, as has also been found in the literature. Conclusions: We find no evidence for a steepening of the inner disk metallicity gradient inside the solar circle as earlier studies indicated. The age-metallicity relation shown by the clusters is consistent with that predicted by chemical evolution models that include the effects of radial migration, but a more detailed comparison between cluster observations and models would be premature. Based on data products from observations made with ESO Telescopes at the La Silla Paranal Observatory under programme ID 188.B-3002 and 193.B-0936. These data products have been processed by the Cambridge Astronomy Survey Unit (CASU) at the Institute of Astronomy, University of Cambridge, and by the FLAMES/UVES reduction team at INAF/Osservatorio Astrofisico di Arcetri. These data have been obtained from the Gaia-ESO Survey Data Archive, prepared and hosted by the Wide Field Astronomy Unit, Institute for Astronomy, University of Edinburgh, which is funded by the UK Science and Technology Facilities Council.Full Table 2 is only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/591/A37

Ligand combination strategy for the preparation of novel low-dimensional and open-framework metal cluster materials

NASA Astrophysics Data System (ADS)

Anokhina, Ekaterina V.

Low-dimensional and open-framework materials containing transition metals have a wide range of applications in redox catalysis, solid-state batteries, and electronic and magnetic devices. This dissertation reports on research carried out with the goal to develop a strategy for the preparation of low-dimensional and open-framework materials using octahedral metal clusters as building blocks. Our approach takes its roots from crystal engineering principles where the desired framework topologies are achieved through building block design. The key idea of this work is to induce directional bonding preferences in the cluster units using a combination of ligands with a large difference in charge density. This investigation led to the preparation and characterization of a new family of niobium oxychloride cluster compounds with original structure types exhibiting 1ow-dimensional or open-framework character. Most of these materials have framework topologies unprecedented in compounds containing octahedral clusters. Comparative analysis of their structural features indicates that the novel cluster connectivity patterns in these systems are the result of complex interplay between the effects of anisotropic ligand arrangement in the cluster unit and optimization of ligand-counterion electrostatic interactions. The important role played by these factors sets niobium oxychloride systems apart from cluster compounds with one ligand type or statistical ligand distribution where the main structure-determining factor is the total number of ligands. These results provide a blueprint for expanding the ligand combination strategy to other transition metal cluster systems and for the future rational design of cluster-based materials.

Performance comparison analysis library communication cluster system using merge sort

NASA Astrophysics Data System (ADS)

Wulandari, D. A. R.; Ramadhan, M. E.

2018-04-01

Begins by using a single processor, to increase the speed of computing time, the use of multi-processor was introduced. The second paradigm is known as parallel computing, example cluster. The cluster must have the communication potocol for processing, one of it is message passing Interface (MPI). MPI have many library, both of them OPENMPI and MPICH2. Performance of the cluster machine depend on suitable between performance characters of library communication and characters of the problem so this study aims to analyze the comparative performances libraries in handling parallel computing process. The case study in this research are MPICH2 and OpenMPI. This case research execute sorting’s problem to know the performance of cluster system. The sorting problem use mergesort method. The research method is by implementing OpenMPI and MPICH2 on a Linux-based cluster by using five computer virtual then analyze the performance of the system by different scenario tests and three parameters for to know the performance of MPICH2 and OpenMPI. These performances are execution time, speedup and efficiency. The results of this study showed that the addition of each data size makes OpenMPI and MPICH2 have an average speed-up and efficiency tend to increase but at a large data size decreases. increased data size doesn’t necessarily increased speed up and efficiency but only execution time example in 100000 data size. OpenMPI has a execution time greater than MPICH2 example in 1000 data size average execution time with MPICH2 is 0,009721 and OpenMPI is 0,003895 OpenMPI can customize communication needs.

Rotation periods of open-cluster stars, 2

NASA Technical Reports Server (NTRS)

Prosser, Charles F.; Shetrone, Matthew D.; Marilli, Ettore; Catalano, Santo; Williams, Scott D.; Backman, Dana E.; Laaksonen, Bentley D.; Adige, Vikram; Marschall, Laurence A.; Stauffer, John R.

1993-01-01

We present the results from a photometric monitoring program of 21 stars observed during 1992 in the Pleiades and Alpha Persei open clusters. Period determinations for 16 stars are given, 13 of which are the first periods reported for these stars. Brightness variations for an additional five cluster stars are also given. One K dwarf member of the alpha Per cluster is observed to have a period of rotation of only 4.39 hr. perhaps the shortest period currently known among BY Draconis variables. The individual photometric measurements have been deposited with the NSSDC. Combining current X-ray flux determinations with known photometric periods, we illustrate the X-ray activity/rotation relation among Pleiades K dwarfs based on available data.

Massive open star clusters using the VVV survey. II. Discovery of six clusters with Wolf-Rayet stars

NASA Astrophysics Data System (ADS)

Chené, A.-N.; Borissova, J.; Bonatto, C.; Majaess, D. J.; Baume, G.; Clarke, J. R. A.; Kurtev, R.; Schnurr, O.; Bouret, J.-C.; Catelan, M.; Emerson, J. P.; Feinstein, C.; Geisler, D.; de Grijs, R.; Hervé, A.; Ivanov, V. D.; Kumar, M. S. N.; Lucas, P.; Mahy, L.; Martins, F.; Mauro, F.; Minniti, D.; Moni Bidin, C.

2013-01-01

Context. The ESO Public Survey "VISTA Variables in the Vía Láctea" (VVV) provides deep multi-epoch infrared observations for an unprecedented 562 sq. degrees of the Galactic bulge, and adjacent regions of the disk. Nearly 150 new open clusters and cluster candidates have been discovered in this survey. Aims: This is the second in a series of papers about young, massive open clusters observed using the VVV survey. We present the first study of six recently discovered clusters. These clusters contain at least one newly discovered Wolf-Rayet (WR) star. Methods: Following the methodology presented in the first paper of the series, wide-field, deep JHKs VVV observations, combined with new infrared spectroscopy, are employed to constrain fundamental parameters for a subset of clusters. Results: We find that the six studied stellar groups are real young (2-7 Myr) and massive (between 0.8 and 2.2 × 103 M⊙) clusters. They are highly obscured (AV ~ 5-24 mag) and compact (1-2 pc). In addition to WR stars, two of the six clusters also contain at least one red supergiant star, and one of these two clusters also contains a blue supergiant. We claim the discovery of 8 new WR stars, and 3 stars showing WR-like emission lines which could be classified WR or OIf. Preliminary analysis provides initial masses of ~30-50 M⊙ for the WR stars. Finally, we discuss the spiral structure of the Galaxy using the six new clusters as tracers, together with the previously studied VVV clusters. Based on observations with ISAAC, VLT, ESO (programme 087.D-0341A), New Technology Telescope at ESO's La Silla Observatory (programme 087.D-0490A) and with the Clay telescope at the Las Campanas Observatory (programme CN2011A-086). Also based on data from the VVV survey (programme 172.B-2002).

First CCD UBVI photometric analysis of six open cluster candidates

NASA Astrophysics Data System (ADS)

Piatti, A. E.; Clariá, J. J.; Ahumada, A. V.

2011-04-01

We have obtained CCD UBVIKC photometry down to V ˜ 22 for the open cluster candidates Haffner 3, Haffner 5, NGC 2368, Haffner 25, Hogg 3 and Hogg 4 and their surrounding fields. None of these objects have been photometrically studied so far. Our analysis shows that these stellar groups are not genuine open clusters since no clear main sequences or other meaningful features can be seen in their colour-magnitude and colour-colour diagrams. We checked for possible differential reddening across the studied fields that could be hiding the characteristics of real open clusters. However, the dust in the directions to these objects appears to be uniformly distributed. Moreover, star counts carried out within and outside the open cluster candidate fields do not support the hypothesis that these objects are real open clusters or even open cluster remnants.

Theoretical study of the H2 reaction with a Pt4 (111) cluster

NASA Astrophysics Data System (ADS)

Cruz, A.; Bertin, V.; Poulain, E.; Benitez, J. I.; Castillo, S.

2004-04-01

The Cs symmetry reaction of the H2 molecule on a Pt4 (111) clusters, has been studied using ab initio multiconfiguration self-consistent field plus extensive multireference configuration interaction variational and perturbative calculations. The H2 interaction by the vertex and by the base of a tetrahedral Pt4 cluster were studied in ground and excited triplet and singlet states (closed and open shells), where the reaction curves are obtained through many avoided crossings. The Pt4 cluster captures and activates the hydrogen molecule; it shows a similar behavior compared with other Ptn (n=1,2,3) systems. The Pt4 cluster in their lowest five open and closed shell electronic states: 3B2, 1B2, 1A1 3A1, 1A1, respectively, may capture and dissociate the H2 molecule without activation barriers for the hydrogen molecule vertex approach. For the threefolded site reaction, i.e., by the base, the situation is different, the hydrogen adsorption presents some barriers. The potential energy minima occur outside and inside the cluster, with strong activation of the H-H bond. In all cases studied, the Pt4 cluster does not absorb the hydrogen molecule.

Gaia Data Release 1. Open cluster astrometry: performance, limitations, and future prospects

NASA Astrophysics Data System (ADS)

Gaia Collaboration; van Leeuwen, F.; Vallenari, A.; Jordi, C.; Lindegren, L.; Bastian, U.; Prusti, T.; de Bruijne, J. H. J.; Brown, A. G. A.; Babusiaux, C.; Bailer-Jones, C. A. L.; Biermann, M.; Evans, D. W.; Eyer, L.; Jansen, F.; Klioner, S. A.; Lammers, U.; Luri, X.; Mignard, F.; Panem, C.; Pourbaix, D.; Randich, S.; Sartoretti, P.; Siddiqui, H. I.; Soubiran, C.; Valette, V.; Walton, N. A.; Aerts, C.; Arenou, F.; Cropper, M.; Drimmel, R.; Høg, E.; Katz, D.; Lattanzi, M. G.; O'Mullane, W.; Grebel, E. K.; Holland, A. D.; Huc, C.; Passot, X.; Perryman, M.; Bramante, L.; Cacciari, C.; Castañeda, J.; Chaoul, L.; Cheek, N.; De Angeli, F.; Fabricius, C.; Guerra, R.; Hernández, J.; Jean-Antoine-Piccolo, A.; Masana, E.; Messineo, R.; Mowlavi, N.; Nienartowicz, K.; Ordóñez-Blanco, D.; Panuzzo, P.; Portell, J.; Richards, P. J.; Riello, M.; Seabroke, G. M.; Tanga, P.; Thévenin, F.; Torra, J.; Els, S. G.; Gracia-Abril, G.; Comoretto, G.; Garcia-Reinaldos, M.; Lock, T.; Mercier, E.; Altmann, M.; Andrae, R.; Astraatmadja, T. L.; Bellas-Velidis, I.; Benson, K.; Berthier, J.; Blomme, R.; Busso, G.; Carry, B.; Cellino, A.; Clementini, G.; Cowell, S.; Creevey, O.; Cuypers, J.; Davidson, M.; De Ridder, J.; de Torres, A.; Delchambre, L.; Dell'Oro, A.; Ducourant, C.; Frémat, Y.; García-Torres, M.; Gosset, E.; Halbwachs, J.-L.; Hambly, N. C.; Harrison, D. L.; Hauser, M.; Hestroffer, D.; Hodgkin, S. T.; Huckle, H. E.; Hutton, A.; Jasniewicz, G.; Jordan, S.; Kontizas, M.; Korn, A. J.; Lanzafame, A. C.; Manteiga, M.; Moitinho, A.; Muinonen, K.; Osinde, J.; Pancino, E.; Pauwels, T.; Petit, J.-M.; Recio-Blanco, A.; Robin, A. C.; Sarro, L. M.; Siopis, C.; Smith, M.; Smith, K. W.; Sozzetti, A.; Thuillot, W.; van Reeven, W.; Viala, Y.; Abbas, U.; Abreu Aramburu, A.; Accart, S.; Aguado, J. J.; Allan, P. M.; Allasia, W.; Altavilla, G.; Álvarez, M. A.; Alves, J.; Anderson, R. I.; Andrei, A. H.; Anglada Varela, E.; Antiche, E.; Antoja, T.; Antón, S.; Arcay, B.; Bach, N.; Baker, S. G.; Balaguer-Núñez, L.; Barache, C.; Barata, C.; Barbier, A.; Barblan, F.; Barrado y Navascués, D.; Barros, M.; Barstow, M. A.; Becciani, U.; Bellazzini, M.; Bello García, A.; Belokurov, V.; Bendjoya, P.; Berihuete, A.; Bianchi, L.; Bienaymé, O.; Billebaud, F.; Blagorodnova, N.; Blanco-Cuaresma, S.; Boch, T.; Bombrun, A.; Borrachero, R.; Bouquillon, S.; Bourda, G.; Bouy, H.; Bragaglia, A.; Breddels, M. A.; Brouillet, N.; Brüsemeister, T.; Bucciarelli, B.; Burgess, P.; Burgon, R.; Burlacu, A.; Busonero, D.; Buzzi, R.; Caffau, E.; Cambras, J.; Campbell, H.; Cancelliere, R.; Cantat-Gaudin, T.; Carlucci, T.; Carrasco, J. M.; Castellani, M.; Charlot, P.; Charnas, J.; Chiavassa, A.; Clotet, M.; Cocozza, G.; Collins, R. S.; Costigan, G.; Crifo, F.; Cross, N. J. G.; Crosta, M.; Crowley, C.; Dafonte, C.; Damerdji, Y.; Dapergolas, A.; David, P.; David, M.; De Cat, P.; de Felice, F.; de Laverny, P.; De Luise, F.; De March, R.; de Martino, D.; de Souza, R.; Debosscher, J.; del Pozo, E.; Delbo, M.; Delgado, A.; Delgado, H. E.; Di Matteo, P.; Diakite, S.; Distefano, E.; Dolding, C.; Dos Anjos, S.; Drazinos, P.; Durán, J.; Dzigan, Y.; Edvardsson, B.; Enke, H.; Evans, N. W.; Eynard Bontemps, G.; Fabre, C.; Fabrizio, M.; Faigler, S.; Falcão, A. J.; Farràs Casas, M.; Federici, L.; Fedorets, G.; Fernández-Hernández, J.; Fernique, P.; Fienga, A.; Figueras, F.; Filippi, F.; Findeisen, K.; Fonti, A.; Fouesneau, M.; Fraile, E.; Fraser, M.; Fuchs, J.; Gai, M.; Galleti, S.; Galluccio, L.; Garabato, D.; García-Sedano, F.; Garofalo, A.; Garralda, N.; Gavras, P.; Gerssen, J.; Geyer, R.; Gilmore, G.; Girona, S.; Giuffrida, G.; Gomes, M.; González-Marcos, A.; González-Núñez, J.; González-Vidal, J. J.; Granvik, M.; Guerrier, A.; Guillout, P.; Guiraud, J.; Gúrpide, A.; Gutiérrez-Sánchez, R.; Guy, L. P.; Haigron, R.; Hatzidimitriou, D.; Haywood, M.; Heiter, U.; Helmi, A.; Hobbs, D.; Hofmann, W.; Holl, B.; Holland, G.; Hunt, J. A. S.; Hypki, A.; Icardi, V.; Irwin, M.; Jevardat de Fombelle, G.; Jofré, P.; Jonker, P. G.; Jorissen, A.; Julbe, F.; Karampelas, A.; Kochoska, A.; Kohley, R.; Kolenberg, K.; Kontizas, E.; Koposov, S. E.; Kordopatis, G.; Koubsky, P.; Krone-Martins, A.; Kudryashova, M.; Kull, I.; Bachchan, R. K.; Lacoste-Seris, F.; Lanza, A. F.; Lavigne, J.-B.; Le Poncin-Lafitte, C.; Lebreton, Y.; Lebzelter, T.; Leccia, S.; Leclerc, N.; Lecoeur-Taibi, I.; Lemaitre, V.; Lenhardt, H.; Leroux, F.; Liao, S.; Licata, E.; Lindstrøm, H. E. P.; Lister, T. A.; Livanou, E.; Lobel, A.; Löffler, W.; López, M.; Lorenz, D.; MacDonald, I.; Magalhães Fernandes, T.; Managau, S.; Mann, R. G.; Mantelet, G.; Marchal, O.; Marchant, J. M.; Marconi, M.; Marinoni, S.; Marrese, P. M.; Marschalkó, G.; Marshall, D. J.; Martín-Fleitas, J. M.; Martino, M.; Mary, N.; Matijevič, G.; Mazeh, T.; McMillan, P. J.; Messina, S.; Michalik, D.; Millar, N. R.; Miranda, B. M. H.; Molina, D.; Molinaro, R.; Molinaro, M.; Molnár, L.; Moniez, M.; Montegriffo, P.; Mor, R.; Mora, A.; Morbidelli, R.; Morel, T.; Morgenthaler, S.; Morris, D.; Mulone, A. F.; Muraveva, T.; Musella, I.; Narbonne, J.; Nelemans, G.; Nicastro, L.; Noval, L.; Ordénovic, C.; Ordieres-Meré, J.; Osborne, P.; Pagani, C.; Pagano, I.; Pailler, F.; Palacin, H.; Palaversa, L.; Parsons, P.; Pecoraro, M.; Pedrosa, R.; Pentikäinen, H.; Pichon, B.; Piersimoni, A. M.; Pineau, F.-X.; Plachy, E.; Plum, G.; Poujoulet, E.; Prša, A.; Pulone, L.; Ragaini, S.; Rago, S.; Rambaux, N.; Ramos-Lerate, M.; Ranalli, P.; Rauw, G.; Read, A.; Regibo, S.; Reylé, C.; Ribeiro, R. A.; Rimoldini, L.; Ripepi, V.; Riva, A.; Rixon, G.; Roelens, M.; Romero-Gómez, M.; Rowell, N.; Royer, F.; Ruiz-Dern, L.; Sadowski, G.; Sagristà Sellés, T.; Sahlmann, J.; Salgado, J.; Salguero, E.; Sarasso, M.; Savietto, H.; Schultheis, M.; Sciacca, E.; Segol, M.; Segovia, J. C.; Segransan, D.; Shih, I.-C.; Smareglia, R.; Smart, R. L.; Solano, E.; Solitro, F.; Sordo, R.; Soria Nieto, S.; Souchay, J.; Spagna, A.; Spoto, F.; Stampa, U.; Steele, I. A.; Steidelmüller, H.; Stephenson, C. A.; Stoev, H.; Suess, F. F.; Süveges, M.; Surdej, J.; Szabados, L.; Szegedi-Elek, E.; Tapiador, D.; Taris, F.; Tauran, G.; Taylor, M. B.; Teixeira, R.; Terrett, D.; Tingley, B.; Trager, S. C.; Turon, C.; Ulla, A.; Utrilla, E.; Valentini, G.; van Elteren, A.; Van Hemelryck, E.; vanLeeuwen, M.; Varadi, M.; Vecchiato, A.; Veljanoski, J.; Via, T.; Vicente, D.; Vogt, S.; Voss, H.; Votruba, V.; Voutsinas, S.; Walmsley, G.; Weiler, M.; Weingrill, K.; Wevers, T.; Wyrzykowski, Ł.; Yoldas, A.; Žerjal, M.; Zucker, S.; Zurbach, C.; Zwitter, T.; Alecu, A.; Allen, M.; Allende Prieto, C.; Amorim, A.; Anglada-Escudé, G.; Arsenijevic, V.; Azaz, S.; Balm, P.; Beck, M.; Bernstein, H.-H.; Bigot, L.; Bijaoui, A.; Blasco, C.; Bonfigli, M.; Bono, G.; Boudreault, S.; Bressan, A.; Brown, S.; Brunet, P.-M.; Bunclark, P.; Buonanno, R.; Butkevich, A. G.; Carret, C.; Carrion, C.; Chemin, L.; Chéreau, F.; Corcione, L.; Darmigny, E.; de Boer, K. S.; de Teodoro, P.; de Zeeuw, P. T.; Delle Luche, C.; Domingues, C. D.; Dubath, P.; Fodor, F.; Frézouls, B.; Fries, A.; Fustes, D.; Fyfe, D.; Gallardo, E.; Gallegos, J.; Gardiol, D.; Gebran, M.; Gomboc, A.; Gómez, A.; Grux, E.; Gueguen, A.; Heyrovsky, A.; Hoar, J.; Iannicola, G.; Isasi Parache, Y.; Janotto, A.-M.; Joliet, E.; Jonckheere, A.; Keil, R.; Kim, D.-W.; Klagyivik, P.; Klar, J.; Knude, J.; Kochukhov, O.; Kolka, I.; Kos, J.; Kutka, A.; Lainey, V.; LeBouquin, D.; Liu, C.; Loreggia, D.; Makarov, V. V.; Marseille, M. G.; Martayan, C.; Martinez-Rubi, O.; Massart, B.; Meynadier, F.; Mignot, S.; Munari, U.; Nguyen, A.-T.; Nordlander, T.; O'Flaherty, K. S.; Ocvirk, P.; Olias Sanz, A.; Ortiz, P.; Osorio, J.; Oszkiewicz, D.; Ouzounis, A.; Palmer, M.; Park, P.; Pasquato, E.; Peltzer, C.; Peralta, J.; Péturaud, F.; Pieniluoma, T.; Pigozzi, E.; Poels, J.; Prat, G.; Prod'homme, T.; Raison, F.; Rebordao, J. M.; Risquez, D.; Rocca-Volmerange, B.; Rosen, S.; Ruiz-Fuertes, M. I.; Russo, F.; Sembay, S.; Serraller Vizcaino, I.; Short, A.; Siebert, A.; Silva, H.; Sinachopoulos, D.; Slezak, E.; Soffel, M.; Sosnowska, D.; Straižys, V.; ter Linden, M.; Terrell, D.; Theil, S.; Tiede, C.; Troisi, L.; Tsalmantza, P.; Tur, D.; Vaccari, M.; Vachier, F.; Valles, P.; Van Hamme, W.; Veltz, L.; Virtanen, J.; Wallut, J.-M.; Wichmann, R.; Wilkinson, M. I.; Ziaeepour, H.; Zschocke, S.

2017-05-01

Context. The first Gaia Data Release contains the Tycho-Gaia Astrometric Solution (TGAS). This is a subset of about 2 million stars for which, besides the position and photometry, the proper motion and parallax are calculated using Hipparcos and Tycho-2 positions in 1991.25 as prior information. Aims: We investigate the scientific potential and limitations of the TGAS component by means of the astrometric data for open clusters. Methods: Mean cluster parallax and proper motion values are derived taking into account the error correlations within the astrometric solutions for individual stars, an estimate of the internal velocity dispersion in the cluster, and, where relevant, the effects of the depth of the cluster along the line of sight. Internal consistency of the TGAS data is assessed. Results: Values given for standard uncertainties are still inaccurate and may lead to unrealistic unit-weight standard deviations of least squares solutions for cluster parameters. Reconstructed mean cluster parallax and proper motion values are generally in very good agreement with earlier Hipparcos-based determination, although the Gaia mean parallax for the Pleiades is a significant exception. We have no current explanation for that discrepancy. Most clusters are observed to extend to nearly 15 pc from the cluster centre, and it will be up to future Gaia releases to establish whether those potential cluster-member stars are still dynamically bound to the clusters. Conclusions: The Gaia DR1 provides the means to examine open clusters far beyond their more easily visible cores, and can provide membership assessments based on proper motions and parallaxes. A combined HR diagram shows the same features as observed before using the Hipparcos data, with clearly increased luminosities for older A and F dwarfs. Tables D.1 to D.19 are also available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/601/A19

Integrated spectral properties of 7 galactic open clusters

NASA Astrophysics Data System (ADS)

Ahumada, A. V.; Clariá, J. J.; Bica, E.; Piatti, A. E.

2000-01-01

This paper presents flux-calibrated integrated spectra in the range 3600-9000 Ä for 7 concentrated, relatively populous Galactic open clusters. We perform simultaneous estimates of age and foreground interstellar reddening by comparing the continuum distribution and line strengths of the cluster spectra with those of template cluster spectra with known parameters. For five clusters these two parameters have been determined for the first time (Ruprecht 144, BH 132, Pismis 21, Lyng\\aa 11 and BH 217), while the results here derived for the remaining two clusters (Hogg 15 and Melotte 105) show very good agreement with previous studies based mainly on colour-magnitude diagrams. We also provide metallicity estimates for six clusters from the equivalent widths of CaII triplet and TiO features. The present cluster sample improves the age resolution around solar metal content in the cluster spectral library for population synthesis. We compare the properties of the present sample with those of clusters in similar directions. Hogg 15 and Pismis 21 are among the most reddened clusters in sectors centered at l = 270o and l = 0o, respectively. Besides, the present results would favour an important dissolution rate of star clusters in these zones. Based on observations made at Complejo Astronómico El Leoncito, which is operated under agreement between the Consejo Nacional de Investigaciones Científicas y Técnicas de la República Argentina and the National Universities of La Plata, Córdoba and San Juan, Argentina.

OpenCluster: A Flexible Distributed Computing Framework for Astronomical Data Processing

NASA Astrophysics Data System (ADS)

Wei, Shoulin; Wang, Feng; Deng, Hui; Liu, Cuiyin; Dai, Wei; Liang, Bo; Mei, Ying; Shi, Congming; Liu, Yingbo; Wu, Jingping

2017-02-01

The volume of data generated by modern astronomical telescopes is extremely large and rapidly growing. However, current high-performance data processing architectures/frameworks are not well suited for astronomers because of their limitations and programming difficulties. In this paper, we therefore present OpenCluster, an open-source distributed computing framework to support rapidly developing high-performance processing pipelines of astronomical big data. We first detail the OpenCluster design principles and implementations and present the APIs facilitated by the framework. We then demonstrate a case in which OpenCluster is used to resolve complex data processing problems for developing a pipeline for the Mingantu Ultrawide Spectral Radioheliograph. Finally, we present our OpenCluster performance evaluation. Overall, OpenCluster provides not only high fault tolerance and simple programming interfaces, but also a flexible means of scaling up the number of interacting entities. OpenCluster thereby provides an easily integrated distributed computing framework for quickly developing a high-performance data processing system of astronomical telescopes and for significantly reducing software development expenses.

A Clustering-Based Approach to Enriching Code Foraging Environment.

PubMed

Niu, Nan; Jin, Xiaoyu; Niu, Zhendong; Cheng, Jing-Ru C; Li, Ling; Kataev, Mikhail Yu

2016-09-01

Developers often spend valuable time navigating and seeking relevant code in software maintenance. Currently, there is a lack of theoretical foundations to guide tool design and evaluation to best shape the code base to developers. This paper contributes a unified code navigation theory in light of the optimal food-foraging principles. We further develop a novel framework for automatically assessing the foraging mechanisms in the context of program investigation. We use the framework to examine to what extent the clustering of software entities affects code foraging. Our quantitative analysis of long-lived open-source projects suggests that clustering enriches the software environment and improves foraging efficiency. Our qualitative inquiry reveals concrete insights into real developer's behavior. Our research opens the avenue toward building a new set of ecologically valid code navigation tools.

A Chandra X-Ray Census of the Interacting Binaries in Old Open Clusters—Collinder 261

NASA Astrophysics Data System (ADS)

Vats, Smriti; van den Berg, Maureen

2017-03-01

We present the first X-ray study of Collinder 261 (Cr 261), which at an age of 7 Gyr is one of the oldest open clusters known in the Galaxy. Our observation with the Chandra X-Ray Observatory is aimed at uncovering the close interacting binaries in Cr 261, and reaches a limiting X-ray luminosity of {L}X≈ 4× {10}29 {erg} {{{s}}}-1 (0.3-7 keV) for stars in the cluster. We detect 107 sources within the cluster half-mass radius r h , and we estimate that among the sources with {L}X≳ {10}30 {erg} {{{s}}}-1, ˜26 are associated with the cluster. We identify a mix of active binaries and candidate active binaries, candidate cataclysmic variables, and stars that have “straggled” from the main locus of Cr 261 in the color-magnitude diagram. Based on a deep optical source catalog of the field, we estimate that Cr 261 has an approximate mass of 6500 M ⊙, roughly the same as the old open cluster NGC 6791. The X-ray emissivity of Cr 261 is similar to that of other old open clusters, supporting the trend that they are more luminous in X-rays per unit mass than old populations of higher (globular clusters) and lower (the local neighborhood) stellar density. This implies that the dynamical destruction of binaries in the densest environments is not solely responsible for the observed differences in X-ray emissivity.

Clustering self-organizing maps (SOM) method for human papillomavirus (HPV) DNA as the main cause of cervical cancer disease

NASA Astrophysics Data System (ADS)

Bustamam, A.; Aldila, D.; Fatimah, Arimbi, M. D.

2017-07-01

One of the most widely used clustering method, since it has advantage on its robustness, is Self-Organizing Maps (SOM) method. This paper discusses the application of SOM method on Human Papillomavirus (HPV) DNA which is the main cause of cervical cancer disease, the most dangerous cancer in developing countries. We use 18 types of HPV DNA-based on the newest complete genome. By using open-source-based program R, clustering process can separate 18 types of HPV into two different clusters. There are two types of HPV in the first cluster while 16 others in the second cluster. The analyzing result of 18 types HPV based on the malignancy of the virus (the difficultness to cure). Two of HPV types the first cluster can be classified as tame HPV, while 16 others in the second cluster are classified as vicious HPV.

CAMPAIGN: an open-source library of GPU-accelerated data clustering algorithms.

PubMed

Kohlhoff, Kai J; Sosnick, Marc H; Hsu, William T; Pande, Vijay S; Altman, Russ B

2011-08-15

Data clustering techniques are an essential component of a good data analysis toolbox. Many current bioinformatics applications are inherently compute-intense and work with very large datasets. Sequential algorithms are inadequate for providing the necessary performance. For this reason, we have created Clustering Algorithms for Massively Parallel Architectures, Including GPU Nodes (CAMPAIGN), a central resource for data clustering algorithms and tools that are implemented specifically for execution on massively parallel processing architectures. CAMPAIGN is a library of data clustering algorithms and tools, written in 'C for CUDA' for Nvidia GPUs. The library provides up to two orders of magnitude speed-up over respective CPU-based clustering algorithms and is intended as an open-source resource. New modules from the community will be accepted into the library and the layout of it is such that it can easily be extended to promising future platforms such as OpenCL. Releases of the CAMPAIGN library are freely available for download under the LGPL from https://simtk.org/home/campaign. Source code can also be obtained through anonymous subversion access as described on https://simtk.org/scm/?group_id=453. kjk33@cantab.net.

X-Ray source populations in old open clusters: Collinder 261

NASA Astrophysics Data System (ADS)

Vats, Smriti; van den Berg, Maureen; Wijnands, Rudy

2014-09-01

We are carrying out an X-ray survey of old open clusters with the Chandra X-ray Observatory. Single old stars, being slow rotators, are very faint in X-rays (L_X < 1×10^27 erg/s). Hence, X-rays produced by mass transfer in cataclysmic variables (CVs) or by rapid rotation of the stars in tidally locked, detached binaries (active binaries; ABs) can be detected, without contamination from single stars. By comparing the properties of various types of interacting binaries in different environments (the Galactic field, old open clusters, globular clusters), we aim to study binary evolution and how it may be affected by dynamical encounters with other cluster stars. Stellar clusters are good targets to study binaries, as age, distance, chemical composition, are well constrained. Collinder (Cr) 261 is an old open cluster (age ~ 7 Gyr), with one of the richest populations inferred of close binaries and blue stragglers of all open clusters and is therefore an obvious target to study the products of close encounters in open clusters. We will present the first results of this study, detailing the low-luminosity X-ray population of Cr 261, in conjunction with other open clusters in our survey (NGC 188, Berkeley 17, NGC 6253, M67, NGC 6791) and in comparison with populations in globular clusters.

Spectroscopic determination of fundamental parameters of small angular diameter galactic open clusters

NASA Astrophysics Data System (ADS)

Ahumada, A. V.; Claria, J. J.; Bica, E.; Parisi, M. C.; Torres, M. C.; Pavani, D. B.

We present integrated spectra obtained at CASLEO (Argentina) for 9 galactic open clusters of small angular diameter. Two of them (BH 55 and Rup 159) have not been the target of previous research. The flux-calibrated spectra cover the spectral range approx. 3600-6900 A. Using the equivalent widths (EWs) of the Balmer lines and comparing the cluster spectra with template spectra, we determined E(B-V) colour excesses and ages for the present cluster sample. The parameters obtained for 6 of the clusters show good agreement with previous determinations based mainly on photometric methods. This is not the case, however, for BH 90, a scarcely reddened cluster, for which Moffat and Vogt (1975, Astron. and Astroph. SS, 20, 125) derived E(B-V) = 0.51. We explain and justify the strong discrepancy found for this object. According to the present analysis, 3 clusters are very young (Bo 14, Tr 15 and Tr 27), 2 are moderately young (NGC 6268 and BH 205), 3 are Hyades-like clusters (Rup 164, BH 90 and BH 55) and only one is an intermediate-age cluster (Rup 159).

Open clusters in the Kepler field. II. NGC 6866

DOE Office of Scientific and Technical Information (OSTI.GOV)

Janes, Kenneth; Hoq, Sadia; Barnes, Sydney A.

We have developed a maximum-likelihood procedure to fit theoretical isochrones to the observed cluster color-magnitude diagrams of NGC 6866, an open cluster in the Kepler spacecraft field of view. The Markov chain Monte Carlo algorithm permits exploration of the entire parameter space of a set of isochrones to find both the best solution and the statistical uncertainties. For clusters in the age range of NGC 6866 with few, if any, red giant members, a purely photometric determination of the cluster properties is not well-constrained. Nevertheless, based on our UBVRI photometry alone, we have derived the distance, reddening, age, and metallicitymore » of the cluster and established estimates for the binary nature and membership probability of individual stars. We derive the following values for the cluster properties: (m – M) {sub V} = 10.98 ± 0.24, E(B – V) = 0.16 ± 0.04 (so the distance = 1250 pc), age =705 ± 170 Myr, and Z = 0.014 ± 0.005.« less

Ruprecht 3: An old star cluster remnant?

NASA Astrophysics Data System (ADS)

Pavani, D. B.; Bica, E.; Ahumada, A. V.; Clariá, J. J.

2003-02-01

2MASS J and H photometry and integrated spectroscopy are employed to study the nature of the poorly populated compact concentration of stars Ruprecht 3, which was previously catalogued as an open cluster. The integrated spectrum remarkably resembles that of a moderately metal-rich globular cluster. The distribution of the object stars in the colour-magnitude diagram is compatible with that of a 1.5 +/- 0.5 Gyr open cluster or older, depending on whether the bluer stars are interpreted as turnoff stars or blue stragglers, respectively. We derive for the object a distance from the Sun dsun = 0.72 +0.04-0.03 kpc and a colour excess E(B-V) = 0.04. Although a globular cluster remnant cannot be ruled out, the integrated spectrum resemblance to that of a globular cluster probably reflects a stochastic effect owing to the few brighter stars. The structural and photometric properties of Ruprecht 3 are compatible with what would be expected for an intermediate-age open cluster remnant. Based on observations made at Complejo Astronómico El Leoncito, which is operated under agreement between the Consejo Nacional de Investigaciones Científicas y Técnicas de la República Argentina and the National Universities of La Plata, Córdoba and San Juan, Argentina.

A Survey on the Taxonomy of Cluster-Based Routing Protocols for Homogeneous Wireless Sensor Networks

PubMed Central

Naeimi, Soroush; Ghafghazi, Hamidreza; Chow, Chee-Onn; Ishii, Hiroshi

2012-01-01

The past few years have witnessed increased interest among researchers in cluster-based protocols for homogeneous networks because of their better scalability and higher energy efficiency than other routing protocols. Given the limited capabilities of sensor nodes in terms of energy resources, processing and communication range, the cluster-based protocols should be compatible with these constraints in either the setup state or steady data transmission state. With focus on these constraints, we classify routing protocols according to their objectives and methods towards addressing the shortcomings of clustering process on each stage of cluster head selection, cluster formation, data aggregation and data communication. We summarize the techniques and methods used in these categories, while the weakness and strength of each protocol is pointed out in details. Furthermore, taxonomy of the protocols in each phase is given to provide a deeper understanding of current clustering approaches. Ultimately based on the existing research, a summary of the issues and solutions of the attributes and characteristics of clustering approaches and some open research areas in cluster-based routing protocols that can be further pursued are provided. PMID:22969350

A survey on the taxonomy of cluster-based routing protocols for homogeneous wireless sensor networks.

PubMed

Naeimi, Soroush; Ghafghazi, Hamidreza; Chow, Chee-Onn; Ishii, Hiroshi

2012-01-01

The past few years have witnessed increased interest among researchers in cluster-based protocols for homogeneous networks because of their better scalability and higher energy efficiency than other routing protocols. Given the limited capabilities of sensor nodes in terms of energy resources, processing and communication range, the cluster-based protocols should be compatible with these constraints in either the setup state or steady data transmission state. With focus on these constraints, we classify routing protocols according to their objectives and methods towards addressing the shortcomings of clustering process on each stage of cluster head selection, cluster formation, data aggregation and data communication. We summarize the techniques and methods used in these categories, while the weakness and strength of each protocol is pointed out in details. Furthermore, taxonomy of the protocols in each phase is given to provide a deeper understanding of current clustering approaches. Ultimately based on the existing research, a summary of the issues and solutions of the attributes and characteristics of clustering approaches and some open research areas in cluster-based routing protocols that can be further pursued are provided.

Locally Weighted Ensemble Clustering.

PubMed

Huang, Dong; Wang, Chang-Dong; Lai, Jian-Huang

2018-05-01

Due to its ability to combine multiple base clusterings into a probably better and more robust clustering, the ensemble clustering technique has been attracting increasing attention in recent years. Despite the significant success, one limitation to most of the existing ensemble clustering methods is that they generally treat all base clusterings equally regardless of their reliability, which makes them vulnerable to low-quality base clusterings. Although some efforts have been made to (globally) evaluate and weight the base clusterings, yet these methods tend to view each base clustering as an individual and neglect the local diversity of clusters inside the same base clustering. It remains an open problem how to evaluate the reliability of clusters and exploit the local diversity in the ensemble to enhance the consensus performance, especially, in the case when there is no access to data features or specific assumptions on data distribution. To address this, in this paper, we propose a novel ensemble clustering approach based on ensemble-driven cluster uncertainty estimation and local weighting strategy. In particular, the uncertainty of each cluster is estimated by considering the cluster labels in the entire ensemble via an entropic criterion. A novel ensemble-driven cluster validity measure is introduced, and a locally weighted co-association matrix is presented to serve as a summary for the ensemble of diverse clusters. With the local diversity in ensembles exploited, two novel consensus functions are further proposed. Extensive experiments on a variety of real-world datasets demonstrate the superiority of the proposed approach over the state-of-the-art.

Design of a Golf Swing Injury Detection and Evaluation open service platform with Ontology-oriented clustering case-based reasoning mechanism.

PubMed

Ku, Hao-Hsiang

2015-01-01

Nowadays, people can easily use a smartphone to get wanted information and requested services. Hence, this study designs and proposes a Golf Swing Injury Detection and Evaluation open service platform with Ontology-oritened clustering case-based reasoning mechanism, which is called GoSIDE, based on Arduino and Open Service Gateway initative (OSGi). GoSIDE is a three-tier architecture, which is composed of Mobile Users, Application Servers and a Cloud-based Digital Convergence Server. A mobile user is with a smartphone and Kinect sensors to detect the user's Golf swing actions and to interact with iDTV. An application server is with Intelligent Golf Swing Posture Analysis Model (iGoSPAM) to check a user's Golf swing actions and to alter this user when he is with error actions. Cloud-based Digital Convergence Server is with Ontology-oriented Clustering Case-based Reasoning (CBR) for Quality of Experiences (OCC4QoE), which is designed to provide QoE services by QoE-based Ontology strategies, rules and events for this user. Furthermore, GoSIDE will automatically trigger OCC4QoE and deliver popular rules for a new user. Experiment results illustrate that GoSIDE can provide appropriate detections for Golfers. Finally, GoSIDE can be a reference model for researchers and engineers.

The Gaia-ESO Survey: open clusters in Gaia-DR1 . A way forward to stellar age calibration

NASA Astrophysics Data System (ADS)

Randich, S.; Tognelli, E.; Jackson, R.; Jeffries, R. D.; Degl'Innocenti, S.; Pancino, E.; Re Fiorentin, P.; Spagna, A.; Sacco, G.; Bragaglia, A.; Magrini, L.; Prada Moroni, P. G.; Alfaro, E.; Franciosini, E.; Morbidelli, L.; Roccatagliata, V.; Bouy, H.; Bravi, L.; Jiménez-Esteban, F. M.; Jordi, C.; Zari, E.; Tautvaišiene, G.; Drazdauskas, A.; Mikolaitis, S.; Gilmore, G.; Feltzing, S.; Vallenari, A.; Bensby, T.; Koposov, S.; Korn, A.; Lanzafame, A.; Smiljanic, R.; Bayo, A.; Carraro, G.; Costado, M. T.; Heiter, U.; Hourihane, A.; Jofré, P.; Lewis, J.; Monaco, L.; Prisinzano, L.; Sbordone, L.; Sousa, S. G.; Worley, C. C.; Zaggia, S.

2018-05-01

Context. Determination and calibration of the ages of stars, which heavily rely on stellar evolutionary models, are very challenging, while representing a crucial aspect in many astrophysical areas. Aims: We describe the methodologies that, taking advantage of Gaia-DR1 and the Gaia-ESO Survey data, enable the comparison of observed open star cluster sequences with stellar evolutionary models. The final, long-term goal is the exploitation of open clusters as age calibrators. Methods: We perform a homogeneous analysis of eight open clusters using the Gaia-DR1 TGAS catalogue for bright members and information from the Gaia-ESO Survey for fainter stars. Cluster membership probabilities for the Gaia-ESO Survey targets are derived based on several spectroscopic tracers. The Gaia-ESO Survey also provides the cluster chemical composition. We obtain cluster parallaxes using two methods. The first one relies on the astrometric selection of a sample of bona fide members, while the other one fits the parallax distribution of a larger sample of TGAS sources. Ages and reddening values are recovered through a Bayesian analysis using the 2MASS magnitudes and three sets of standard models. Lithium depletion boundary (LDB) ages are also determined using literature observations and the same models employed for the Bayesian analysis. Results: For all but one cluster, parallaxes derived by us agree with those presented in Gaia Collaboration (2017, A&A, 601, A19), while a discrepancy is found for NGC 2516; we provide evidence supporting our own determination. Inferred cluster ages are robust against models and are generally consistent with literature values. Conclusions: The systematic parallax errors inherent in the Gaia DR1 data presently limit the precision of our results. Nevertheless, we have been able to place these eight clusters onto the same age scale for the first time, with good agreement between isochronal and LDB ages where there is overlap. Our approach appears promising and demonstrates the potential of combining Gaia and ground-based spectroscopic datasets. Based on observations collected with the FLAMES instrument at VLT/UT2 telescope (Paranal Observatory, ESO, Chile), for the Gaia-ESO Large Public Spectroscopic Survey (188.B-3002, 193.B-0936).Additional tables are only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/612/A99

Determining open cluster membership. A Bayesian framework for quantitative member classification

NASA Astrophysics Data System (ADS)

Stott, Jonathan J.

2018-01-01

Aims: My goal is to develop a quantitative algorithm for assessing open cluster membership probabilities. The algorithm is designed to work with single-epoch observations. In its simplest form, only one set of program images and one set of reference images are required. Methods: The algorithm is based on a two-stage joint astrometric and photometric assessment of cluster membership probabilities. The probabilities were computed within a Bayesian framework using any available prior information. Where possible, the algorithm emphasizes simplicity over mathematical sophistication. Results: The algorithm was implemented and tested against three observational fields using published survey data. M 67 and NGC 654 were selected as cluster examples while a third, cluster-free, field was used for the final test data set. The algorithm shows good quantitative agreement with the existing surveys and has a false-positive rate significantly lower than the astrometric or photometric methods used individually.

Open clusters. III. Fundamental parameters of B stars in NGC 6087, NGC 6250, NGC 6383, and NGC 6530 B-type stars with circumstellar envelopes

NASA Astrophysics Data System (ADS)

Aidelman, Y.; Cidale, L. S.; Zorec, J.; Panei, J. A.

2018-02-01

Context. Stellar physical properties of star clusters are poorly known and the cluster parameters are often very uncertain. Methods: Our goals are to perform a spectrophotometric study of the B star population in open clusters to derive accurate stellar parameters, search for the presence of circumstellar envelopes, and discuss the characteristics of these stars. The BCD spectrophotometric system is a powerful method to obtain stellar fundamental parameters from direct measurements of the Balmer discontinuity. To this end, we wrote the interactive code MIDE3700. The BCD parameters can also be used to infer the main properties of open clusters: distance modulus, color excess, and age. Furthermore, we inspected the Balmer discontinuity to provide evidence for the presence of circumstellar disks and identify Be star candidates. We used an additional set of high-resolution spectra in the Hα region to confirm the Be nature of these stars. Results: We provide Teff, log g, Mv, Mbol, and spectral types for a sample of 68 stars in the field of the open clusters NGC 6087, NGC 6250, NGC 6383, and NGC 6530, as well as the cluster distances, ages, and reddening. Then, based on a sample of 230 B stars in the direction of the 11 open clusters studied along this series of three papers, we report 6 new Be stars, 4 blue straggler candidates, and 15 B-type stars (called Bdd) with a double Balmer discontinuity, which indicates the presence of circumstellar envelopes. We discuss the distribution of the fraction of B, Be, and Bdd star cluster members per spectral subtype. The majority of the Be stars are dwarfs and present a maximum at the spectral type B2-B4 in young and intermediate-age open clusters (<40 Myr). Another maximum of Be stars is observed at the spectral type B6-B8 in open clusters older than 40 Myr, where the population of Bdd stars also becomes relevant. The Bdd stars seem to be in a passive emission phase. Conclusions: Our results support previous statements that the Be phenomenon is present along the whole main sequence band and occurs in very different evolutionary states. We find clear evidence of an increase of stars with circumstellar envelopes with cluster age. The Be phenomenon reaches its maximum in clusters of intermediate age (10-40 Myr) and the number of B stars with circumstellar envelopes (Be plus Bdd stars) is also high for the older clusters (40-100 Myr). Observations taken at CASLEO, operating under agreement of CONICET and the Universities of La Plata, Córdoba, and San Juan, Argentina.Tables 1, 2, 9-16 are only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/610/A30

A survey for low-mass stellar and substellar members of the Hyades open cluster

NASA Astrophysics Data System (ADS)

Melnikov, Stanislav; Eislöffel, Jochen

2018-03-01

Context. Unlike young open clusters (with ages < 250 Myr), the Hyades cluster (age 600 Myr) has a clear deficit of very low-mass stars (VLM) and brown dwarfs (BD). Since this open cluster has a low stellar density and covers several tens of square degrees on the sky, extended surveys are required to improve the statistics of the VLM/BD objects in the cluster. Aim. We search for new VLM stars and BD candidates in the Hyades cluster to improve the present-day cluster mass function down to substellar masses. Methods: An imaging survey of the Hyades with a completeness limit of 21.m5 in the R band and 20.m5 in the I band was carried out with the 2k × 2k CCD Schmidt camera at the 2 m Alfred Jensch Telescope in Tautenburg. We performed a photometric selection of the cluster member candidates by combining results of our survey with 2MASS JHKs photometry Results: We present a photometric and proper motion survey covering 23.4 deg2 in the Hyades cluster core region. Using optical/IR colour-magnitude diagrams, we identify 66 photometric cluster member candidates in the magnitude range 14.m7 < I < 20.m5. The proper motion measurements are based on several all-sky surveys with an epoch difference of 60-70 yr for the bright objects. The proper motions allowed us to discriminate the cluster members from field objects and resulted in 14 proper motion members of the Hyades. We rediscover Hy 6 as a proper motion member and classify it as a substellar object candidate (BD) based on the comparison of the observed colour-magnitude diagram with theoretical model isochrones. Conclusions: With our results, the mass function of the Hyades continues to be shallow below 0.15 M⊙ indicating that the Hyades have probably lost their lowest mass members by means of dynamical evolution. We conclude that the Hyades core represents the "VLM/BD desert" and that most of the substeller objects may have already left the volume of the cluster.

The WIYN Open Cluster Study: A 15-Year Report

NASA Astrophysics Data System (ADS)

Mathieu, Robert D.; WOCS Collaboration

2013-06-01

The WIYN 3.5m telescope combines large aperture, wide field of view and superb image quality. The WIYN consortium includes investigators in numerous areas of open cluster research. The combination spawned the WIYN Open Cluster Study (WOCS) over a decade ago, with the goals of producing 1) comprehensive photometric, astrometric and spectroscopic data for new fundamental open clusters and 2) addressing key astrophysical problems with these data. The set of core WOCS open clusters spans age and metallicity. Low reddening, solar proximity and richness were also desirable features in selecting core open clusters. More than 50 WIYN Open Cluster Study papers have been published in refereed journals. Highlights include: deep and wide-field photometry of NGC 188, NGC 2168 (M35), and NGC 6819 (WOCS I, II, XI and LII); deep and wide-field proper-motion studies of the old open clusters NGC 188, NGC 2682 (M67) and NGC 6791 (WOCS XVII, XXXIII and XLVI); comprehensive radial-velocity surveys of NGC 188, NGC 2168 and NGC 6819 (WOCS XXXII, XXIV, and XXXVIII); metallicity and lithium abundances in NGC 2168 (WOCS V); comprehensive definition of the hard-binary populations of NGC 188 and NGC 2168 (WOCS XXII and XLVIII); rotation period distributions in NGC 1039 (M34) and NGC 2168 (WOCS XXXV, XLIII, and XLV); study of chromospheric activity in NGC 2682 (WOCS XVIII); photometric variability surveys in NGC 188 and NGC 2682 (IX and XV); new Bayesian techniques for determination of cluster parameters (WOCS XXIII); a new infrared age-diagnostic for open clusters (WOCS XL); theoretical studies of stellar rotation (WOCS XIII and XIV); sophisticated N-body simulations of NGC 188 (WOCS LI); and the discovery of a high binary frequency and white dwarf companions among NGC 188 blue stragglers. While the WIYN 3.5m telescope remains at its heart, today the WIYN Open Cluster Study collaboration extends beyond both the WIYN observatory and consortium, and continues as a vital and productive exploration into these fundamental stellar systems. Publication list can be found at http://www.astro.ufl.edu ata/wocs/pubs.html. The WIYN Open Cluster Study has been continuously supported by grants from the National Science Foundation.

TX Cnc AS A MEMBER OF THE PRAESEPE OPEN CLUSTER

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, X. B.; Deng, L.; Lu, P.

2009-08-15

We present B-, V-, and I-band CCD photometry of the W UMa-type binary system TX Cnc, which is a member star of the Praesepe open cluster. Based on the observations, new ephemeris and a revised photometric solution of the binary system were derived. Combined with the results of the radial velocity solution contributed by Pribulla et al., the absolute parameters of the system were determined. The mass, radius, and luminosity of the primary component are derived to be 1.35 {+-} 0.02 M {sub sun}, 1.27 {+-} 0.04 R {sub sun}, and 2.13 {+-} 0.11 L {sub sun}. Those for themore » secondary star are computed as 0.61 {+-} 0.01 M {sub sun}, 0.89 {+-} 0.03 R {sub sun}, and 1.26 {+-} 0.07 L {sub sun}, respectively. Based on these results, a distance modulus of (m - M) {sub V} = 6.34 {+-} 0.05 is determined for the star. It confirms the membership of TX Cnc to the Praesepe open cluster. The evolutionary status and the physical nature of the binary system are discussed compared with the theoretical model.« less

ClusterControl: a web interface for distributing and monitoring bioinformatics applications on a Linux cluster.

PubMed

Stocker, Gernot; Rieder, Dietmar; Trajanoski, Zlatko

2004-03-22

ClusterControl is a web interface to simplify distributing and monitoring bioinformatics applications on Linux cluster systems. We have developed a modular concept that enables integration of command line oriented program into the application framework of ClusterControl. The systems facilitate integration of different applications accessed through one interface and executed on a distributed cluster system. The package is based on freely available technologies like Apache as web server, PHP as server-side scripting language and OpenPBS as queuing system and is available free of charge for academic and non-profit institutions. http://genome.tugraz.at/Software/ClusterControl

Properties of the Open Cluster Tombaugh 1 from High-resolution Spectroscopy and uvbyCaHβ Photometry

NASA Astrophysics Data System (ADS)

Sales Silva, João V.; Carraro, Giovanni; Anthony-Twarog, Barbara J.; Moni Bidin, Christian; Costa, Edgardo; Twarog, Bruce A.

2016-01-01

Open clusters can be the key to deepening our knowledge on various issues involving the structure and evolution of the Galactic disk and details of stellar evolution because a cluster’s properties are applicable to all its members. However, the number of open clusters with detailed analysis from high-resolution spectroscopy or precision photometry imposes severe limitations on studies of these objects. To expand the number of open clusters with well-defined chemical abundances and fundamental parameters, we investigate the poorly studied, anticenter open cluster Tombaugh 1. Using precision uvbyCaHβ photometry and high-resolution spectroscopy, we derive the cluster’s reddening, obtain photometric metallicity estimates, and, for the first time, present a detailed abundance analysis of 10 potential cluster stars (nine clump stars and one Cepheid). Using the radial position from the cluster center and multiple color indices, we have isolated a sample of unevolved, probable single-star members of Tombaugh 1. From 51 stars, the cluster reddening is found to be E(b-y) = 0.221 ± 0.006 or E(B-V) = 0.303 ± 0.008, where the errors refer to the internal standard errors of the mean. The weighted photometric metallicity from m1 and hk is [Fe/H] = -0.10 ± 0.02, while a match to the Victoria-Regina Strömgren isochrones leads to an age of 0.95 ± 0.10 Gyr and an apparent modulus of (m-M) = 13.10 ± 0.10. Radial velocities identify six giants as probable cluster members, and the elemental abundances of Fe, Na, Mg, Al, Si, Ca, Ti, Cr, Ni, Y, Ba, Ce, and Nd have been derived for both the cluster and the field stars. Tombaugh 1 appears to be a typical inner thin disk, intermediate-age open cluster of slightly subsolar metallicity, located just beyond the solar circle, with solar elemental abundance ratios except for the heavy s-process elements, which are a factor of two above solar. Its metallicity is consistent with a steep metallicity gradient in the galactocentric region between 9.5 and 12 kpc. Our study also shows that Cepheid XZ CMa is not a member of Tombaugh 1 and reveals that this Cepheid presents signs of barium enrichment, making it a probable binary star. Based on observations carried out at Las Campanas Observatory (program ID: CN2009B-042) and Cerro Tololo Inter-American Observatory.

Building CHAOS: An Operating System for Livermore Linux Clusters

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garlick, J E; Dunlap, C M

2003-02-21

The Livermore Computing (LC) Linux Integration and Development Project (the Linux Project) produces and supports the Clustered High Availability Operating System (CHAOS), a cluster operating environment based on Red Hat Linux. Each CHAOS release begins with a set of requirements and ends with a formally tested, packaged, and documented release suitable for use on LC's production Linux clusters. One characteristic of CHAOS is that component software packages come from different sources under varying degrees of project control. Some are developed by the Linux Project, some are developed by other LC projects, some are external open source projects, and some aremore » commercial software packages. A challenge to the Linux Project is to adhere to release schedules and testing disciplines in a diverse, highly decentralized development environment. Communication channels are maintained for externally developed packages in order to obtain support, influence development decisions, and coordinate/understand release schedules. The Linux Project embraces open source by releasing locally developed packages under open source license, by collaborating with open source projects where mutually beneficial, and by preferring open source over proprietary software. Project members generally use open source development tools. The Linux Project requires system administrators and developers to work together to resolve problems that arise in production. This tight coupling of production and development is a key strategy for making a product that directly addresses LC's production requirements. It is another challenge to balance support and development activities in such a way that one does not overwhelm the other.« less

A revised moving cluster distance to the Pleiades open cluster

NASA Astrophysics Data System (ADS)

Galli, P. A. B.; Moraux, E.; Bouy, H.; Bouvier, J.; Olivares, J.; Teixeira, R.

2017-02-01

Context. The distance to the Pleiades open cluster has been extensively debated in the literature over several decades. Although different methods point to a discrepancy in the trigonometric parallaxes produced by the Hipparcos mission, the number of individual stars with known distances is still small compared to the number of cluster members to help solve this problem. Aims: We provide a new distance estimate for the Pleiades based on the moving cluster method, which will be useful to further discuss the so-called Pleiades distance controversy and compare it with the very precise parallaxes from the Gaia space mission. Methods: We apply a refurbished implementation of the convergent point search method to an updated census of Pleiades stars to calculate the convergent point position of the cluster from stellar proper motions. Then, we derive individual parallaxes for 64 cluster members using radial velocities compiled from the literature, and approximate parallaxes for another 1146 stars based on the spatial velocity of the cluster. This represents the largest sample of Pleiades stars with individual distances to date. Results: The parallaxes derived in this work are in good agreement with previous results obtained in different studies (excluding Hipparcos) for individual stars in the cluster. We report a mean parallax of 7.44 ± 0.08 mas and distance of pc that is consistent with the weighted mean of 135.0 ± 0.6 pc obtained from the non-Hipparcos results in the literature. Conclusions: Our result for the distance to the Pleiades open cluster is not consistent with the Hipparcos catalog, but favors the recent and more precise distance determination of 136.2 ± 1.2 pc obtained from Very Long Baseline Interferometry observations. It is also in good agreement with the mean distance of 133 ± 5 pc obtained from the first trigonometric parallaxes delivered by the Gaia satellite for the brightest cluster members in common with our sample. Full Table B.2 is only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/598/A48

Associating clinical archetypes through UMLS Metathesaurus term clusters.

PubMed

Lezcano, Leonardo; Sánchez-Alonso, Salvador; Sicilia, Miguel-Angel

2012-06-01

Clinical archetypes are modular definitions of clinical data, expressed using standard or open constraint-based data models as the CEN EN13606 and openEHR. There is an increasing archetype specification activity that raises the need for techniques to associate archetypes to support better management and user navigation in archetype repositories. This paper reports on a computational technique to generate tentative archetype associations by mapping them through term clusters obtained from the UMLS Metathesaurus. The terms are used to build a bipartite graph model and graph connectivity measures can be used for deriving associations.

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences.

PubMed

Rideout, Jai Ram; He, Yan; Navas-Molina, Jose A; Walters, William A; Ursell, Luke K; Gibbons, Sean M; Chase, John; McDonald, Daniel; Gonzalez, Antonio; Robbins-Pianka, Adam; Clemente, Jose C; Gilbert, Jack A; Huse, Susan M; Zhou, Hong-Wei; Knight, Rob; Caporaso, J Gregory

2014-01-01

We present a performance-optimized algorithm, subsampled open-reference OTU picking, for assigning marker gene (e.g., 16S rRNA) sequences generated on next-generation sequencing platforms to operational taxonomic units (OTUs) for microbial community analysis. This algorithm provides benefits over de novo OTU picking (clustering can be performed largely in parallel, reducing runtime) and closed-reference OTU picking (all reads are clustered, not only those that match a reference database sequence with high similarity). Because more of our algorithm can be run in parallel relative to "classic" open-reference OTU picking, it makes open-reference OTU picking tractable on massive amplicon sequence data sets (though on smaller data sets, "classic" open-reference OTU clustering is often faster). We illustrate that here by applying it to the first 15,000 samples sequenced for the Earth Microbiome Project (1.3 billion V4 16S rRNA amplicons). To the best of our knowledge, this is the largest OTU picking run ever performed, and we estimate that our new algorithm runs in less than 1/5 the time than would be required of "classic" open reference OTU picking. We show that subsampled open-reference OTU picking yields results that are highly correlated with those generated by "classic" open-reference OTU picking through comparisons on three well-studied datasets. An implementation of this algorithm is provided in the popular QIIME software package, which uses uclust for read clustering. All analyses were performed using QIIME's uclust wrappers, though we provide details (aided by the open-source code in our GitHub repository) that will allow implementation of subsampled open-reference OTU picking independently of QIIME (e.g., in a compiled programming language, where runtimes should be further reduced). Our analyses should generalize to other implementations of these OTU picking algorithms. Finally, we present a comparison of parameter settings in QIIME's OTU picking workflows and make recommendations on settings for these free parameters to optimize runtime without reducing the quality of the results. These optimized parameters can vastly decrease the runtime of uclust-based OTU picking in QIIME.

The Peculiarities in O-Type Galaxy Clusters

NASA Astrophysics Data System (ADS)

Panko, E. A.; Emelyanov, S. I.

We present the results of analysis of 2D distribution of galaxies in galaxy cluster fields. The Catalogue of Galaxy Clusters and Groups PF (Panko & Flin) was used as input observational data set. We selected open rich PF galaxy clusters, containing 100 and more galaxies for our study. According to Panko classification scheme open galaxy clusters (O-type) have no concentration to the cluster center. The data set contains both pure O-type clusters and O-type clusters with overdence belts, namely OL and OF types. According to Rood & Sastry and Struble & Rood ideas, the open galaxy clusters are the beginning stage of cluster evolution. We found in the O-type clusters some types of statistically significant regular peculiarities, such as two crossed belts or curved strip. We suppose founded features connected with galaxy clusters evolution and the distribution of DM inside the clusters.

uvbyβ photometry of early type open cluster and field stars

NASA Astrophysics Data System (ADS)

Handler, G.

2011-04-01

Context. The β Cephei stars and slowly pulsating B (SPB) stars are massive main sequence variables. The strength of their pulsational driving strongly depends on the opacity of iron-group elements. As many of those stars naturally occur in young open clusters, whose metallicities can be determined in several fundamental ways, it is logical to study the incidence of pulsation in several young open clusters. Aims: To provide the foundation for such an investigation, Strömgren-Crawford uvbyβ photometry of open cluster target stars was carried out to determine effective temperatures, luminosities, and therefore cluster memberships. Methods: In the course of three observing runs, uvbyβ photometry for 168 target stars was acquired and transformed into the standard system by measurements of 117 standard stars. The list of target stars also included some known cluster and field β Cephei stars, as well as β Cephei and SPB candidates that are targets of the asteroseismic part of the Kepler satellite mission. Results: The uvbyβ photometric results are presented. The data are shown to be on the standard system, and the properties of the target stars are discussed: 140 of these are indeed OB stars, a total of 101 targets lie within the β Cephei and/or SPB star instability strips, and each investigated cluster contains such potential pulsators. Conclusions: These measurements will be taken advantage of in a number of subsequent publications. Based on measurements obtained at McDonald Observatory of the University of Texas at Austin.Tables 3-6 are only available in electronic form at the CDS via anonymous ftp to cdsarc.u-strasbg.fr (130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/528/A148

Catalog of open clusters and associated interstellar matter

NASA Technical Reports Server (NTRS)

Leisawitz, David

1988-01-01

The Catalog of Open Clusters and Associated Interstellar Matter summarizes observations of 128 open clusters and their associated ionized, atomic, and molecular iinterstellar matter. Cluster sizes, distances, radial velocities, ages, and masses, and the radial velocities and masses of associated interstellar medium components, are given. The database contains information from approximately 400 references published in the scientific literature before 1988.

The same frequency of planets inside and outside open clusters of stars.

PubMed

Meibom, Søren; Torres, Guillermo; Fressin, Francois; Latham, David W; Rowe, Jason F; Ciardi, David R; Bryson, Steven T; Rogers, Leslie A; Henze, Christopher E; Janes, Kenneth; Barnes, Sydney A; Marcy, Geoffrey W; Isaacson, Howard; Fischer, Debra A; Howell, Steve B; Horch, Elliott P; Jenkins, Jon M; Schuler, Simon C; Crepp, Justin

2013-07-04

Most stars and their planets form in open clusters. Over 95 per cent of such clusters have stellar densities too low (less than a hundred stars per cubic parsec) to withstand internal and external dynamical stresses and fall apart within a few hundred million years. Older open clusters have survived by virtue of being richer and denser in stars (1,000 to 10,000 per cubic parsec) when they formed. Such clusters represent a stellar environment very different from the birthplace of the Sun and other planet-hosting field stars. So far more than 800 planets have been found around Sun-like stars in the field. The field planets are usually the size of Neptune or smaller. In contrast, only four planets have been found orbiting stars in open clusters, all with masses similar to or greater than that of Jupiter. Here we report observations of the transits of two Sun-like stars by planets smaller than Neptune in the billion-year-old open cluster NGC6811. This demonstrates that small planets can form and survive in a dense cluster environment, and implies that the frequency and properties of planets in open clusters are consistent with those of planets around field stars in the Galaxy.

A Study Of Anomalous Stars and Binary Populations Within Open Clusters: Tests Of Theoretical Models

NASA Astrophysics Data System (ADS)

Geller, Aaron M.; Mathieu, Robert D.; Braden, Ella; Latham, David W.

2008-08-01

``Anomalous'' stars, such as blue stragglers and more recently sub- subgiants, have been an enduring challenge for stellar evolution theory. Recently it has become clear that in star clusters these systems are closely linked to the binary star populations. Furthermore, through advances in N-body modeling, we have come to realize that stellar dynamical processes play a central role in the formation of such anomalous stars. Indeed, these stars trace the interface between the classical fields of stellar evolution and stellar dynamics. We propose a thesis study to directly probe this interface through high-precision radial-velocity measurements of the anomalous stars and the binary populations in four open clusters. We have selected NGC 188 (7 Gyr), M67 (NGC 2682; 4 Gyr), NGC 6819 (2.4 Gyr), and M35 (NGC 2168; 150 Myr), as these span a wide range in age, are rich enough to provide statistically significant conclusions, and already have an extensive base of kinematic, spectroscopic, and photometric observations from the WIYN Open Cluster Study. Our proposed observations will define the spectroscopic hard binary populations (fraction, frequency distributions of orbital parameters, mass ratios) for orbital periods approaching the hard-soft boundary. These observations will also provide a comprehensive survey for anomalous stars, including secure establishment of their cluster membership. These data will allow us to perform the first detailed comparison to predictions from open cluster simulations of the binary populations among normal and anomalous stars, and thereby to constrain the evolutionary paths from one to the other.

A Study Of Anomalous Stars and Binary Populations Within Open Clusters: Tests Of Theoretical Models

NASA Astrophysics Data System (ADS)

Geller, Aaron M.; Mathieu, Robert D.; Gosnell, Natalie; Latham, David W.

2009-02-01

``Anomalous'' stars, such as blue stragglers and more recently sub- subgiants, have been an enduring challenge for stellar evolution theory. Recently it has become clear that in star clusters these systems are closely linked to the binary star populations. Furthermore, through advances in N-body modeling, we have come to realize that stellar dynamical processes play a central role in the formation of such anomalous stars. Indeed, these stars trace the interface between the classical fields of stellar evolution and stellar dynamics. We propose a thesis study to directly probe this interface through high-precision radial-velocity measurements of the anomalous stars and the binary populations in four open clusters. We have selected NGC 188 (7 Gyr), M67 (NGC 2682; 4 Gyr), NGC 6819 (2.4 Gyr), and M35 (NGC 2168; 150 Myr), as these span a wide range in age, are rich enough to provide statistically significant conclusions, and already have an extensive base of kinematic, spectroscopic, and photometric observations from the WIYN Open Cluster Study. Our proposed observations will define the spectroscopic hard binary populations (fraction, frequency distributions of orbital parameters, mass ratios) for orbital periods approaching the hard-soft boundary. These observations will also provide a comprehensive survey for anomalous stars, including secure establishment of their cluster membership. These data will allow us to perform the first detailed comparison to predictions from open cluster simulations of the binary populations among normal and anomalous stars, and thereby to constrain the evolutionary paths from one to the other.

A Study Of Anomalous Stars and Binary Populations Within Open Clusters: Tests Of Theoretical Models

NASA Astrophysics Data System (ADS)

Geller, Aaron M.; Mathieu, Robert D.; Braden, Ella; Latham, David W.

2008-02-01

``Anomalous'' stars, such as blue stragglers and more recently sub- subgiants, have been an enduring challenge for stellar evolution theory. Recently it has become clear that in star clusters these systems are closely linked to the binary star populations. Furthermore, through advances in N-body modeling, we have come to realize that stellar dynamical processes play a central role in the formation of such anomalous stars. Indeed, these stars trace the interface between the classical fields of stellar evolution and stellar dynamics. We propose a thesis study to directly probe this interface through high-precision radial-velocity measurements of the anomalous stars and the binary populations in four open clusters. We have selected NGC 188 (7 Gyr), M67 (NGC 2682; 4 Gyr), NGC 6819 (2.4 Gyr), and M35 (NGC 2168; 150 Myr), as these span a wide range in age, are rich enough to provide statistically significant conclusions, and already have an extensive base of kinematic, spectroscopic, and photometric observations from the WIYN Open Cluster Study. Our proposed observations will define the spectroscopic hard binary populations (fraction, frequency distributions of orbital parameters, mass ratios) for orbital periods approaching the hard-soft boundary. These observations will also provide a comprehensive survey for anomalous stars, including secure establishment of their cluster membership. These data will allow us to perform the first detailed comparison to predictions from open cluster simulations of the binary populations among normal and anomalous stars, and thereby to constrain the evolutionary paths from one to the other.

Late-Type Membership of the Open Cluster NGC 2232

NASA Technical Reports Server (NTRS)

Orban, Chris; Patten, Brian

2004-01-01

NGC 2232 is one of the nearest open clusters (approx.360 pc) with an age of approx.25 Myr. This places it in the unique position to study the transition from T Tauri activity to the Zero Age Main Sequence. In order for those studies to begin, late-type members must be identified for the cluster. X-ray observations combined with ground-based photometry and spectroscopy offers the best way to accomplish this goal. We present photometry in the VRI bands, 2MASS near-infrared measurements in the J, H , Ks bands and spectra for the suspected optical counterparts to the X-ray sources in the field of NGC 2232. 46 candidate members were identified through these efforts ranging from F5 to M5.

BARIUM SURFACE ABUNDANCES OF BLUE STRAGGLERS IN THE OPEN CLUSTER NGC 6819

DOE Office of Scientific and Technical Information (OSTI.GOV)

Milliman, Katelyn E.; Mathieu, Robert D.; Schuler, Simon C., E-mail: milliman@astro.wisc.edu

2015-09-15

We present a barium surface abundance of 12 blue stragglers (BSs) and 18 main-sequence (MS) stars in the intermediate-age open cluster NGC 6819 (2.5 Gyr) based on spectra obtained from the Hydra Multi-object Spectrograph on the WIYN 3.5 m telescope. For the MS stars we find [Fe/H] = +0.05 ± 0.04 and [Ba/Fe] = −0.01 ± 0.10. The majority of the BS stars are consistent with these values. We identify five BSs with significant barium enhancement. These stars most likely formed through mass transfer from an asymptotic giant branch star that polluted the surface of the BS with the nucleosynthesismore » products generated during thermal pulsations. This conclusion aligns with the results from the substantial work done on the BSs in old open cluster NGC 188 that identifies mass transfer as the dominant mechanism for BS formation in that open cluster. However, four of the BSs with enhanced barium show no radial-velocity evidence for a companion. The one star that is in a binary is a double-lined system, meaning the companion is not a white dwarf and not the remnant of a prior AGB star. In this paper we attempt to develop a consistent scenario to explain the origin of these five BSs.« less

Strand swapping regulates the iron-sulfur cluster in the diabetes drug target mitoNEET

PubMed Central

Baxter, Elizabeth Leigh; Jennings, Patricia A.; Onuchic, José N.

2012-01-01

MitoNEET is a recently identified diabetes drug target that coordinates a transferable 2Fe-2S cluster, and additionally contains an unusual strand swap. In this manuscript, we use a dual basin structure-based model to predict and characterize the folding and functionality of strand swapping in mitoNEET. We demonstrate that a strand unswapped conformation is kinetically accessible and that multiple levels of control are employed to regulate the conformational dynamics of the system. Environmental factors such as temperature can shift route preference toward the unswapped pathway. Additionally we see that a region recently identified as contributing to frustration in folding acts as a regulatory hinge loop that modulates conformational balance. Interestingly, strand unswapping transfers strain specifically to cluster-coordinating residues, opening the cluster-coordinating pocket. Strengthening contacts within the cluster-coordinating pocket opens a new pathway between the swapped and unswapped conformation that utilizes cracking to bypass the unfolded basin. These results suggest that local control within distinct regions affect motions important in regulating mitoNEET’s 2Fe-2S clusters. PMID:22308404

Chemical composition of the stellar cluster Gaia1: no surprise behind Sirius

NASA Astrophysics Data System (ADS)

Mucciarelli, A.; Monaco, L.; Bonifacio, P.; Saviane, I.

2017-07-01

We observed six He-clump stars of the intermediate-age stellar cluster Gaia1 with the MIKE/Magellan spectrograph. A possible extra-galactic origin of this cluster, recently discovered thanks to the first data release of the ESA Gaia mission, has been suggested, based on its orbital parameters. Abundances for Fe, α, proton- and neutron-capture elements have been obtained. We find no evidence of intrinsic abundance spreads. The iron abundance is solar ([FeI/H] = + 0.00 ± 0.01; σ = 0.03 dex). All the other abundance ratios are generally solar-scaled, similar to the Galactic thin disk and open cluster stars of similar metallicity. The chemical composition of Gaia1 does not support an extra-galactic origin for this stellar cluster, which can be considered as a standard Galactic open cluster. The full Table A.1 is only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/603/L7

DOE Office of Scientific and Technical Information (OSTI.GOV)

Eriksen, Janus J., E-mail: janusje@chem.au.dk; Jørgensen, Poul; Matthews, Devin A.

The accuracy at which total energies of open-shell atoms and organic radicals may be calculated is assessed for selected coupled cluster perturbative triples expansions, all of which augment the coupled cluster singles and doubles (CCSD) energy by a non-iterative correction for the effect of triple excitations. Namely, the second- through sixth-order models of the recently proposed CCSD(T–n) triples series [J. J. Eriksen et al., J. Chem. Phys. 140, 064108 (2014)] are compared to the acclaimed CCSD(T) model for both unrestricted as well as restricted open-shell Hartree-Fock (UHF/ROHF) reference determinants. By comparing UHF- and ROHF-based statistical results for a test setmore » of 18 modest-sized open-shell species with comparable RHF-based results, no behavioral differences are observed for the higher-order models of the CCSD(T–n) series in their correlated descriptions of closed- and open-shell species. In particular, we find that the convergence rate throughout the series towards the coupled cluster singles, doubles, and triples (CCSDT) solution is identical for the two cases. For the CCSD(T) model, on the other hand, not only its numerical consistency, but also its established, yet fortuitous cancellation of errors breaks down in the transition from closed- to open-shell systems. The higher-order CCSD(T–n) models (orders n > 3) thus offer a consistent and significant improvement in accuracy relative to CCSDT over the CCSD(T) model, equally for RHF, UHF, and ROHF reference determinants, albeit at an increased computational cost.« less

Fundamental parameters of the highly reddened young open clusters Westerlund 1 and 2

NASA Astrophysics Data System (ADS)

Piatti, A. E.; Bica, E.; Claria, J. J.

1998-02-01

We study the compact open clusters Westerlund1 (BH197) and Westerlund2. We present CCD integrated spectroscopy for both clusters, and CCD imaging in the V and I bands for the former one. So far, Westerlund1 is possibly the most reddened open cluster studied in detail (Av ~ 13.0). It has an age of 8 +/- 3 Myr and a distance from the Sun of d_sun ~ 1.0 +/- 0.4 kpc. For Westerlund2 we derive a visual absorption AV~ 5.0 mag, an age of 2-3 Myr, and d_sun=5.7+/- 0.3 kpc. From luminosity and structural arguments we conclude that Westerlund1, although young and compact, it is a massive cluster, in contrast to Westerlund2. Based on observations made at Complejo Astronómico El Leoncito, which is operated under agreement between the Consejo Nacional de Investigaciones Cientificas y Tecnicas de la Republica Argentina and the Universities of La Plata, Cordoba and San Juan, Argentina, and at the University of Toronto (David Dunlap Observatory) 24-inch telescope, Las Campanas, Chile. The photometric observations are available at CDS via anonymous ftp to cdsarc.u-strasbg.fr (130.79.128.5) or via http://cdsweb.u-strasbg.fr/Abstract.html

Reanalysis of 24 Nearby Open Clusters using Gaia data

NASA Astrophysics Data System (ADS)

Yen, Steffi X.; Reffert, Sabine; Röser, Siegfried; Schilbach, Elena; Kharchenko, Nina V.; Piskunov, Anatoly E.

2018-04-01

We have developed a fully automated cluster characterization pipeline, which simultaneously determines cluster membership and fits the fundamental cluster parameters: distance, reddening, and age. We present results for 24 established clusters and compare them to literature values. Given the large amount of stellar data for clusters available from Gaia DR2 in 2018, this pipeline will be beneficial to analyzing the parameters of open clusters in our Galaxy.

Globular cluster chemistry in fast-rotating dwarf stars belonging to intermediate-age open clusters

NASA Astrophysics Data System (ADS)

Pancino, Elena

2018-06-01

The peculiar chemistry observed in multiple populations of Galactic globular clusters is not generally found in other systems such as dwarf galaxies and open clusters, and no model can currently fully explain it. Exploring the boundaries of the multiple-population phenomenon and the variation of its extent in the space of cluster mass, age, metallicity, and compactness has proven to be a fruitful line of investigation. In the framework of a larger project to search for multiple populations in open clusters that is based on literature and survey data, I found peculiar chemical abundance patterns in a sample of intermediate-age open clusters with publicly available data. More specifically, fast-rotating dwarf stars (v sin i ≥ 50 km s-1) that belong to four clusters (Pleiades, Ursa Major, Come Berenices, and Hyades) display a bimodality in either [Na/Fe] or [O/Fe], or both, with the low-Na and high-O peak more populated than the high-Na and low-O peak. Additionally, two clusters show a Na-O anti-correlation in the fast-rotating stars, and one cluster shows a large [Mg/Fe] variation in stars with high [Na/Fe], reaching the extreme Mg depletion observed in NGC 2808. Even considering that the sample sizes are small, these patterns call for attention in the light of a possible connection with the multiple population phenomenon of globular clusters. The specific chemistry observed in these fast-rotating dwarf stars is thought to be produced by a complex interplay of different diffusion and mixing mechanisms, such as rotational mixing and mass loss, which in turn are influenced by metallicity, binarity, mass, age, variability, and so on. However, with the sample in hand, it was not possible to identify which stellar parameters cause the observed Na and O bimodality and Na-O anti-correlation. This suggests that other stellar properties might be important in addition to stellar rotation. Stellar binarity might influence the rotational properties and enhance rotational mixing and mass loss of stars in a dense environment like that of clusters (especially globulars). In conclusion, rotation and binarity appear as a promising research avenue for better understanding multiple stellar populations in globular clusters; this is certainly worth exploring further.

Zone-Based Routing Protocol for Wireless Sensor Networks

PubMed Central

Venkateswarlu Kumaramangalam, Muni; Adiyapatham, Kandasamy; Kandasamy, Chandrasekaran

2014-01-01

Extensive research happening across the globe witnessed the importance of Wireless Sensor Network in the present day application world. In the recent past, various routing algorithms have been proposed to elevate WSN network lifetime. Clustering mechanism is highly successful in conserving energy resources for network activities and has become promising field for researches. However, the problem of unbalanced energy consumption is still open because the cluster head activities are tightly coupled with role and location of a particular node in the network. Several unequal clustering algorithms are proposed to solve this wireless sensor network multihop hot spot problem. Current unequal clustering mechanisms consider only intra- and intercluster communication cost. Proper organization of wireless sensor network into clusters enables efficient utilization of limited resources and enhances lifetime of deployed sensor nodes. This paper considers a novel network organization scheme, energy-efficient edge-based network partitioning scheme, to organize sensor nodes into clusters of equal size. Also, it proposes a cluster-based routing algorithm, called zone-based routing protocol (ZBRP), for elevating sensor network lifetime. Experimental results show that ZBRP out-performs interims of network lifetime and energy conservation with its uniform energy consumption among the cluster heads. PMID:27437455

Zone-Based Routing Protocol for Wireless Sensor Networks.

PubMed

Venkateswarlu Kumaramangalam, Muni; Adiyapatham, Kandasamy; Kandasamy, Chandrasekaran

2014-01-01

Extensive research happening across the globe witnessed the importance of Wireless Sensor Network in the present day application world. In the recent past, various routing algorithms have been proposed to elevate WSN network lifetime. Clustering mechanism is highly successful in conserving energy resources for network activities and has become promising field for researches. However, the problem of unbalanced energy consumption is still open because the cluster head activities are tightly coupled with role and location of a particular node in the network. Several unequal clustering algorithms are proposed to solve this wireless sensor network multihop hot spot problem. Current unequal clustering mechanisms consider only intra- and intercluster communication cost. Proper organization of wireless sensor network into clusters enables efficient utilization of limited resources and enhances lifetime of deployed sensor nodes. This paper considers a novel network organization scheme, energy-efficient edge-based network partitioning scheme, to organize sensor nodes into clusters of equal size. Also, it proposes a cluster-based routing algorithm, called zone-based routing protocol (ZBRP), for elevating sensor network lifetime. Experimental results show that ZBRP out-performs interims of network lifetime and energy conservation with its uniform energy consumption among the cluster heads.

Personality traits and clinical/biochemical course in the first year after kidney transplant.

PubMed

Thomas, Caroline Venzon; de Castro, Elisa Kern; Antonello, Ivan Carlos Ferreira

2016-10-01

The relationship between personality and health is frequently studied in scientific research. This study investigated the clinical/biochemical course of kidney transplant patients based on personality traits. A longitudinal study assessed 114 kidney transplant patients (men = 68 and women = 46) with an average age of 47.72 years (SD = 11.4). Personality was evaluated using the Brazilian Factorial Personality Inventory (BFP/Big Five Model). Clinical variables were analyzed based on patient charts (estimated glomerular filtration rate (eGFR), hypertension, acute rejection, infection, graft loss, and death). Personality types were assessed by hierarchical cluster analysis. Two groups with personality types were differentiated by psychological characteristics: Cluster 1 - average neuroticism, high surgency, agreeableness and conscientiousness, and low openness; Cluster 2 - high neuroticism, average surgency and agreeableness, average conscientiousness, and low openness. There was no statistically significant difference between the clusters in terms of hypertension, acute infection, graft loss, death, and Human Leukocyte Antigen (HLA) I and II panel reactive antibodies. eGFR was associated with the personality types. Cluster 2 was associated with a better renal function in the 9-month follow-up period after kidney transplantation. In this study, patients from Cluster 2 exhibited higher eGFR 9 months after the transplant procedure compared to those from Cluster 1. Monitoring these patients over a longer period may provide a better understanding of the relationship between personality traits and clinical course during the post-transplant period.

Singlet-paired coupled cluster theory for open shells

NASA Astrophysics Data System (ADS)

Gomez, John A.; Henderson, Thomas M.; Scuseria, Gustavo E.

2016-06-01

Restricted single-reference coupled cluster theory truncated to single and double excitations accurately describes weakly correlated systems, but often breaks down in the presence of static or strong correlation. Good coupled cluster energies in the presence of degeneracies can be obtained by using a symmetry-broken reference, such as unrestricted Hartree-Fock, but at the cost of good quantum numbers. A large body of work has shown that modifying the coupled cluster ansatz allows for the treatment of strong correlation within a single-reference, symmetry-adapted framework. The recently introduced singlet-paired coupled cluster doubles (CCD0) method is one such model, which recovers correct behavior for strong correlation without requiring symmetry breaking in the reference. Here, we extend singlet-paired coupled cluster for application to open shells via restricted open-shell singlet-paired coupled cluster singles and doubles (ROCCSD0). The ROCCSD0 approach retains the benefits of standard coupled cluster theory and recovers correct behavior for strongly correlated, open-shell systems using a spin-preserving ROHF reference.

Eclipsing Binaries in Open Clusters

NASA Astrophysics Data System (ADS)

Southworth, John; Clausen, Jens Viggo

2006-08-01

The study of detached eclipsing binaries in open clusters can provide stringent tests of theoretical stellar evolutionary models, which must simultaneously fit the masses, radii, and luminosities of the eclipsing stars and the radiative properties of every other star in the cluster. We review recent progress in such studies and discuss two unusually interesting objects currently under analysis. GV Carinae is an A0 m + A8 m binary in the Southern open cluster NGC 3532; its eclipse depths have changed by 0.1 mag between 1990 and 2001, suggesting that its orbit is being perturbed by a relatively close third body. DW Carinae is a high-mass unevolved B1 V + B1 V binary in the very young open cluster Collinder 228, and displays double-peaked emission in the centre of the Hα line which is characteristic of Be stars. We conclude by pointing out that the great promise of eclipsing binaries in open clusters can only be satisfied when both the binaries and their parent clusters are well-observed, a situation which is less common than we would like.

Photometry and spectroscopy in the open cluster Alpha Persei, 2

NASA Technical Reports Server (NTRS)

Prosser, Charles F.

1993-01-01

Results from a combination of new spectroscopic and photometric observations in the lower main-sequence and pre-main sequence of the open cluster alpha Persei are presented. New echelle spectroscopy has provided radial and rotational velocity information for thirteen candidate members, three of which are nonmembers based on radial velocity, absence of a Li 6707A feature, and absence of H-alpha emission. A set of revised rotational velocity estimates for several slowly rotating candidates identified earlier is given, yielding rotational velocities as low as 7 km/s for two apparent cluster members. VRI photometry for several pre-main sequence members is given; the new (V,V-I(sub K)) photometry yields a more clearly defined pre-main sequence. A list of approximately 43 new faint candidate members based on the (V,V-I(sub K)) CCD photometry is presented in an effort to identify additional cluster members at very low masses. Low-dispersion spectra obtained for several of these candidates provide in some cases supporting evidence for cluster membership. The single brown dwarf candidate in this cluster is for the first time placed in a color-magnitude diagram with other cluster members, providing a better means for establishing its true status. Stars from among the list of new photometric candidates may provide the means for establishing a sequence of cluster members down to very faint magnitudes (V approximately 21) and consequently very low masses. New coordinate determinations for previous candidate members and finding charts for the new photometric candidates are provided in appendices.

Variation in selection of microhabitats by Merriam's turkey brood hens

Treesearch

Mark A. Rumble; Stanley H. Anderson

1997-01-01

We studied microhabitats of Merriam‘s turkey (Meleagris gallopavo merriami) brood hens in a ponderosa pine (Pinus ponderosa) ecosystem in South Dakota from 1986 to 1988. Cluster analysis indicated three groups of microhabitats, open-shrub, open-grasslforb and forest, based on vegetation characteristics at sites selected by brood...

Blue straggler stars: lessons from open clusters.

NASA Astrophysics Data System (ADS)

Geller, Aaron M.

Open clusters enable a deep dive into blue straggler characteristics. Recent work shows that the binary properties (frequency, orbital elements and companion masses and evolutionary states) of the blue stragglers are the most important diagnostic for determining their origins. To date the multi-epoch radial-velocity observations necessary for characterizing these blue straggler binaries have only been carried out in open clusters. In this paper, I highlight recent results in the open clusters NGC 188, NGC 2682 (M67) and NGC 6819. The characteristics of many of the blue stragglers in these open clusters point directly to origins through mass transfer from an evolved donor star. Additionally, a handful of blue stragglers show clear signatures of past dynamical encounters. These comprehensive, diverse and detailed observations also reveal important challenges for blue straggler formation models (and particularly the mass-transfer channel), which we must overcome to fully understand the origins of blue straggler stars and other mass-transfer products.

A starburst region at the tip of the Galactic bar around l=347-350

NASA Astrophysics Data System (ADS)

Marco, Amparo; Negueruela, Ignacio; González-Fernández, Carlos; Maíz-Apellániz, Jesús; Dorda, Ricardo; Clark, J. Simon

2015-08-01

In the past few years, several clusters of red supergiants have been discovered in a small region of the Milky Way, close to the base of the Scutum-Crux Arm and the tip of the Long Bar, between l=24º and l=29º. According to the number of observed red supergiants and using population synthesis models, they must contain very large stellar populations to harbour so many RSGs, some of them being candidates to the most massive young clusters in the Galaxy. These massive open clusters are part of a huge structure most likely containing hundreds of red supergiants. These results suggest that the Scutum complex represents a giant star formation region triggered by dynamical excitation by the Galactic bar, whose tip is believed to intersect the Scutum-Crux Arm close to this region. If this scenario is correct, a similar structure would be expected close to the opposite end of the Galactic long bar. We must find in an area between l=347º-350º (these sight lines include the expected location of the far tip of the Galactic bar in the model of González-Fernández et al. (2012)) likely candidates to very massive open clusters.We are carrying out a comprehensive optical and infrared photometric and spectroscopic study of this region containing the open clusters VdBH 222, Teutsch 85 and their surroundings. We have analyzed the population of VdBH 222 and we have found a large population of luminous supergiants and OB stars. The cluster lies behind ~7.5 mag of extinction and has a probable distance of ~ 10 kpc and an age of ~12 Ma. VdBH 222 is a young massive cluster with a likely mass > 20000 Msolar. Now, we are analyzing the population of the open cluster Teutsch 85 and surroundings, finding a numerous population of supergiants.In this work, we will discuss the possible role of the Galactic bar in triggering the formation of starburst clusters.

A multimembership catalogue for 1876 open clusters using UCAC4 data

NASA Astrophysics Data System (ADS)

Sampedro, L.; Dias, W. S.; Alfaro, E. J.; Monteiro, H.; Molino, A.

2017-10-01

The main objective of this work is to determine the cluster members of 1876 open clusters, using positions and proper motions of the astrometric fourth United States Naval Observatory (USNO) CCD Astrograph Catalog (UCAC4). For this purpose, we apply three different methods, all based on a Bayesian approach, but with different formulations: a purely parametric method, another completely non-parametric algorithm and a third, recently developed by Sampedro & Alfaro, using both formulations at different steps of the whole process. The first and second statistical moments of the members' phase-space subspace, obtained after applying the three methods, are compared for every cluster. Although, on average, the three methods yield similar results, there are also specific differences between them, as well as for some particular clusters. The comparison with other published catalogues shows good agreement. We have also estimated, for the first time, the mean proper motion for a sample of 18 clusters. The results are organized in a single catalogue formed by two main files, one with the most relevant information for each cluster, partially including that in UCAC4, and the other showing the individual membership probabilities for each star in the cluster area. The final catalogue, with an interface design that enables an easy interaction with the user, is available in electronic format at the Stellar Systems Group (SSG-IAA) web site (http://ssg.iaa.es/en/content/sampedro-cluster-catalog).

Membership and Coronal Activity in the NGC 2232 and Cr 140 Open Clusters

NASA Technical Reports Server (NTRS)

Patten, Brian M.; Oliversen, Ronald J. (Technical Monitor)

2001-01-01

This is the second annual performance report for our grant "Membership and Coronal Activity in the NGC 2232 and Cr 140 Open Clusters." We propose to identify X-ray sources and extract net source counts in 8 archival ROSAT HRI images in the regions of the NGC 2232 and Cr 140 open clusters. These X-ray data will be combined with ground-based photometry and spectroscopy in order to identify G, K, and early-M type cluster members. At present, no members later than approximately F5 are currently known for either cluster. With ages of approximately 25 Myr and at a distance of just 320 - 360 pc, the combined late-type membership of the NGC 2232 and Cr 140 clusters will yield an almost unique sample of solar-type stars in the post-T Tauri/pre-main sequence phase of evolution. These stars will be used to assess the level and dispersion in coronal activity levels, as part of a probe of the importance of magnetic braking and the level of magnetic dynamo activity, for solar-type stars just before they reach the ZAMS. Over the past year we have successfully acquired all of the ground-based data necessary to support the analysis of the archival ROSAT X-ray data in the regions around both of these clusters. By the end of 2001 we expect to have completed the reduction and analysis of the ground-based photometry and spectroscopy and will begin the integration of these data with the ROSAT X-ray data. A certain amount of pressure to complete the work on NGC 2232 is coming from the SIRTF project, as this cluster may be a key component to a circumstellar disk evolution GTO program. We are only too happy to try to help and have worked to speed the analysis as much as possible. The primary activity to be undertaken in the next few months is the integration of the groundbased photometry and spectroscopy with the archival ROSAT X-ray data and then writing the paper summarizing our results. The most time consuming portion of this next phase is, of course, seeing the paper through publication in a peer-reviewed journal. Therefore, we have requested a no-cost extension to the grant to allow us to bring this project to a conclusion.

Effects of rogue ryanodine receptors on Ca2+ sparks in cardiac myocytes

PubMed Central

Chen, Xudong; Feng, Yundi; Tan, Wenchang

2018-01-01

Ca2+ sparks and Ca2+ quarks, arising from clustered and rogue ryanodine receptors (RyRs), are significant Ca2+ release events from the junctional sarcoplasmic reticulum (JSR). Based on the anomalous subdiffusion of Ca2+ in the cytoplasm, a mathematical model was developed to investigate the effects of rogue RyRs on Ca2+ sparks in cardiac myocytes. Ca2+ quarks and sparks from the stochastic opening of rogue and clustered RyRs are numerically reproduced and agree with experimental measurements. It is found that the stochastic opening Ca2+ release units (CRUs) of clustered RyRs are regulated by free Ca2+ concentration in the JSR lumen (i.e. [Ca2+]lumen). The frequency of spontaneous Ca2+ sparks is remarkably increased by the rogue RyRs opening at high [Ca2+]lumen, but not at low [Ca2+]lumen. Hence, the opening of rogue RyRs contributes to the formation of Ca2+ sparks at high [Ca2+]lumen. The interplay of Ca2+ sparks and Ca2+ quarks has been discussed in detail. This work is of significance to provide insight into understanding Ca2+ release mechanisms in cardiac myocytes. PMID:29515864

Effects of rogue ryanodine receptors on Ca2+ sparks in cardiac myocytes.

PubMed

Chen, Xudong; Feng, Yundi; Huo, Yunlong; Tan, Wenchang

2018-02-01

Ca 2+ sparks and Ca 2+ quarks, arising from clustered and rogue ryanodine receptors (RyRs), are significant Ca 2+ release events from the junctional sarcoplasmic reticulum (JSR). Based on the anomalous subdiffusion of Ca 2+ in the cytoplasm, a mathematical model was developed to investigate the effects of rogue RyRs on Ca 2+ sparks in cardiac myocytes. Ca 2+ quarks and sparks from the stochastic opening of rogue and clustered RyRs are numerically reproduced and agree with experimental measurements. It is found that the stochastic opening Ca 2+ release units (CRUs) of clustered RyRs are regulated by free Ca 2+ concentration in the JSR lumen (i.e. [Ca 2+ ] lumen ). The frequency of spontaneous Ca 2+ sparks is remarkably increased by the rogue RyRs opening at high [Ca 2+ ] lumen , but not at low [Ca 2+ ] lumen . Hence, the opening of rogue RyRs contributes to the formation of Ca 2+ sparks at high [Ca 2+ ] lumen . The interplay of Ca 2+ sparks and Ca 2+ quarks has been discussed in detail. This work is of significance to provide insight into understanding Ca 2+ release mechanisms in cardiac myocytes.

Microfracture spacing distributions and the evolution of fracture patterns in sandstones

NASA Astrophysics Data System (ADS)

Hooker, J. N.; Laubach, S. E.; Marrett, R.

2018-03-01

Natural fracture patterns in sandstone were sampled using scanning electron microscope-based cathodoluminescence (SEM-CL) imaging. All fractures are opening-mode and are fully or partially sealed by quartz cement. Most sampled fractures are too small to be height-restricted by sedimentary layers. At very low strains (<∼0.001), fracture spatial distributions are indistinguishable from random, whereas at higher strains, fractures are generally statistically clustered. All 12 large (N > 100) datasets show spacings that are best fit by log-normal size distributions, compared to exponential, power law, or normal distributions. The clustering of fractures suggests that the locations of natural factures are not determined by a random process. To investigate natural fracture localization, we reconstructed the opening history of a cluster of fractures within the Huizachal Group in northeastern Mexico, using fluid inclusions from synkinematic cements and thermal-history constraints. The largest fracture, which is the only fracture in the cluster visible to the naked eye, among 101 present, opened relatively late in the sequence. This result suggests that the growth of sets of fractures is a self-organized process, in which small, initially isolated fractures grow and progressively interact, with preferential growth of a subset of fractures developing at the expense of growth of the rest. Size-dependent sealing of fractures within sets suggests that synkinematic cementation may contribute to fracture clustering.

DISCOVERY OF 14 NEW SLOWLY PULSATING B STARS IN THE OPEN CLUSTER NGC 7654

DOE Office of Scientific and Technical Information (OSTI.GOV)

Luo, Y. P.; Han, Z. W.; Zhang, X. B.

2012-02-10

We carried out time-series BV CCD photometric observations of the open cluster NGC 7654 (Messier 52) to search for variable stars. Eighteen slowly pulsating B (SPB) stars have been detected, among which 14 candidates are newly discovered, three known ones are confirmed, and a previously found {delta} Scuti star is also identified as an SPB candidate. Twelve SPBs are probable cluster members based on membership analysis. This makes NGC 7654 the richest galactic open cluster in terms of SPB star content. It is also a new discovery that NGC 7654 hosts three {gamma} Dor star candidates. We found that allmore » these stars (18 SPB and 3 {gamma} Dor stars) have periods longer than their corresponding fundamental radial mode. With such a big sample of g-mode pulsators in a single cluster, it is clear that multi-mode pulsation is more common in the upper part of the main sequence than in the lower part. All the stars span a narrow strip on the period-luminosity plane, which also includes the {gamma} Dor stars at the low-luminosity extension. This result implies that there may be a single period-luminosity relation applicable to all g-mode main-sequence pulsators. As a by-product, three EA-type eclipsing binaries and an EW-type eclipsing binary are also discovered.« less

VizieR Online Data Catalog: Globular and open clusters observed by SDSS/SEGUE (Morrison+, 2016)

NASA Astrophysics Data System (ADS)

Morrison, H. L.; Ma, Z.; Clem, J. L.; An, D.; Connor, T.; Schechtman-Rook, A.; Casagrande, L.; Rockosi, C.; Yanny, B.; Harding, P.; Beers, T. C.; Johnson, J. A.; Schneider, D. P.

2018-03-01

The SEGUE project observed a number of globular and open clusters for calibration purposes. For calibration of the red giants, we selected the globular clusters M92, M13 and M71 (spanning metallicities from -2.4 to -0.8) and the open clusters Be 29, NGC 7789 and NGC 6791, whose [Fe/H] values range from -0.4 to +0.4. In all but one case, the clusters are within the SDSS footprint and so ugriz photometry is available for the cluster stars. The SDSS cluster images were analyzed using DAOPHOT (Stetson 1987PASP...99..191S) by An et al. (2008ApJS..179..326A) because the SDSS photometric pipeline was not designed to handle crowded fields. (8 data files).

Highly dynamically evolved intermediate-age open clusters

NASA Astrophysics Data System (ADS)

Piatti, Andrés E.; Dias, Wilton S.; Sampedro, Laura M.

2017-04-01

We present a comprehensive UBVRI and Washington CT1T2 photometric analysis of seven catalogued open clusters, namely: Ruprecht 3, 9, 37, 74, 150, ESO 324-15 and 436-2. The multiband photometric data sets in combination with 2MASS photometry and Gaia astrometry for the brighter stars were used to estimate their structural parameters and fundamental astrophysical properties. We found that Ruprecht 3 and ESO 436-2 do not show self-consistent evidence of being physical systems. The remained studied objects are open clusters of intermediate age (9.0 ≤ log(t yr-1) ≤ 9.6), of relatively small size (rcls ˜ 0.4-1.3 pc) and placed between 0.6 and 2.9 kpc from the Sun. We analysed the relationships between core, half-mass, tidal and Jacoby radii as well as half-mass relaxation times to conclude that the studied clusters are in an evolved dynamical stage. The total cluster masses obtained by summing those of the observed cluster stars resulted to be ˜10-15 per cent of the masses of open clusters of similar age located closer than 2 kpc from the Sun. We found that cluster stars occupy volumes as large as those for tidally filled clusters.

Is the Hogg 12-NGC 3590 pair a new open cluster binary system?

NASA Astrophysics Data System (ADS)

Piatti, A. E.; Clariá, J. J.; Ahumada, A. V.

Based on CCD UBVI_(KC) images obtained at Cerro Tololo Inter-American Observatory (CTIO, Chile) and on morphological criteria, as well as on the stellar density in the region, we confirm that Hogg 12 is a genuine open cluster (OC) separated in the sky from NGC 3590 by scarcely 3.6 pc. The colour-magnitude diagrams of Hogg 12, cleaned from field star contamina- tion, reveal that this is a solar metal content cluster, affected by E(B-V) = 0.40 ± 0.05, located at a heliocentric distance d = 2.0 ± 0.5 kpc, and of an age similar to that of NGC 3590. Evidence that these two objects form an OC binary system is presented. A detailed version of this work can be seen in PASP, 122, 516 (2010).

Dust-enshrouded super star-clusters

NASA Astrophysics Data System (ADS)

Sauvage, Marc; Plante, Stéphanie

2003-04-01

With the advent of either sensitive space-born infrared cameras, or their high-resolution ground-based siblings, we are uncovering a new category of star clusters: the dust-enshrouded super-star clusters. These manifest themselves only beyond a few microns, as their shroud of dust is able to block all light emitted by the stars themselves. Here we present our results on the spectacular cluster in SBS 0335-052, a very metal-poor galaxy. We also point to the growing number of galaxy analogs to SBS 0335-052, revealing the possibility that these clusters signal a major mode of star formation in starbursts. We conclude by listing a number of open points these clusters raise, in particular with respect to high-redshift counterparts.

Metallicity calibrations for dwarf stars and giants in the Geneva photometric system

NASA Astrophysics Data System (ADS)

Netopil, Martin

2017-08-01

We use the most homogeneous Geneva seven-colour photometric system to derive new metallicity calibrations for early A- to K-type stars that cover both, dwarf stars and giants. The calibrations are based on several spectroscopic data sets that were merged to a common scale, and we applied them to open cluster data to obtain an additional proof of the metallicity scale and accuracy. In total, metallicities of 54 open clusters are presented. The accuracy of the calibrations for single stars is in general below 0.1 dex, but for the open cluster sample with mean values based on several stars we find a much better precision, a scatter as low as about 0.03 dex. Furthermore, we combine the new results with another comprehensive photometric data set to present a catalogue of mean metallicities for more than 3000 F- and G-type dwarf stars with σ ˜ 0.06 dex. The list was extended by more than 1200 hotter stars up to about 8500 K (or spectral type A3) by taking advantage of their almost reddening free characteristic in the new Geneva metallicity calibrations. These two large samples are well suited as primary or secondary calibrators of other data, and we already identified about 20 spectroscopic data sets that show offsets up to about 0.4 dex.

A Chandra X-ray census of the interacting binaries in old open clusters - NGC 188

NASA Astrophysics Data System (ADS)

Vats, Smriti; Van Den Berg, Maureen

2017-01-01

We present a new X-ray study of NGC 188, one of the oldest open clusters known in the Milky Way (7 Gyr). Our X-ray observation using the Chandra X-ray Observatory is aimed at uncovering the population of close interacting binaries in the cluster. We detect 84 X-ray sources with a limiting X-ray luminosity, LX ~ 4×1029 erg s-1 (0.3-7 keV), of which 28 are within the half-mass radius. Of these, 13 are proper-motion or radial-velocity cluster members, wherein we identify a mix of active binaries (ABs) and blue straggler stars (BSSs). We also identify one tentative cataclysmic variable (CV) candidate which is a known short-period photometric variable, but whose membership to NGC 188 is unknown. We have compared the X-ray luminosity per unit of cluster mass (i.e. the X-ray emissivity) of NGC 188 with those of other old Galactic open clusters and dense globular clusters (47 Tuc, NGC 6397). Our findings confirm the earlier result that old open clusters have higher X-ray emissivities than the globular clusters (LX ≥1×1030 erg s-1). This may be explained by dynamical encounters in globulars, which could have a net effect of destroying binaries, or the typically higher metallicities of open clusters. We find one intriguing X-ray source in NGC 188 that is a BSS and cluster member, whose X-ray luminosity cannot be explained by its currently understood binary configuration. Its X-ray detection invokes the need for a third companion in the system.

Photometry of Standard Stars and Open Star Clusters

NASA Astrophysics Data System (ADS)

Jefferies, Amanda; Frinchaboy, Peter

2010-10-01

Photometric CCD observations of open star clusters and standard stars were carried out at the McDonald Observatory in Fort Davis, Texas. This data was analyzed using aperture photometry algorithms (DAOPHOT II and ALLSTAR) and the IRAF software package. Color-magnitude diagrams of these clusters were produced, showing the evolution of each cluster along the main sequence.

IoT Service Clustering for Dynamic Service Matchmaking.

PubMed

Zhao, Shuai; Yu, Le; Cheng, Bo; Chen, Junliang

2017-07-27

As the adoption of service-oriented paradigms in the IoT (Internet of Things) environment, real-world devices will open their capabilities through service interfaces, which enable other functional entities to interact with them. In an IoT application, it is indispensable to find suitable services for satisfying users' requirements or replacing the unavailable services. However, from the perspective of performance, it is inappropriate to find desired services from the service repository online directly. Instead, clustering services offline according to their similarity and matchmaking or discovering service online in limited clusters is necessary. This paper proposes a multidimensional model-based approach to measure the similarity between IoT services. Then, density-peaks-based clustering is employed to gather similar services together according to the result of similarity measurement. Based on the service clustering, the algorithms of dynamic service matchmaking, discovery, and replacement will be performed efficiently. Evaluating experiments are conducted to validate the performance of proposed approaches, and the results are promising.

IoT Service Clustering for Dynamic Service Matchmaking

PubMed Central

Yu, Le; Cheng, Bo; Chen, Junliang

2017-01-01

As the adoption of service-oriented paradigms in the IoT (Internet of Things) environment, real-world devices will open their capabilities through service interfaces, which enable other functional entities to interact with them. In an IoT application, it is indispensable to find suitable services for satisfying users’ requirements or replacing the unavailable services. However, from the perspective of performance, it is inappropriate to find desired services from the service repository online directly. Instead, clustering services offline according to their similarity and matchmaking or discovering service online in limited clusters is necessary. This paper proposes a multidimensional model-based approach to measure the similarity between IoT services. Then, density-peaks-based clustering is employed to gather similar services together according to the result of similarity measurement. Based on the service clustering, the algorithms of dynamic service matchmaking, discovery, and replacement will be performed efficiently. Evaluating experiments are conducted to validate the performance of proposed approaches, and the results are promising. PMID:28749431

A starburst region around l = 347° - 350°

NASA Astrophysics Data System (ADS)

Marco, A.; Negueruela, I.; Monguió, M.; González-Fernández, C.; Maíz Apellániz, J.; Dorda, R.; Clark, J. S.

2017-03-01

Very recently, a number of obscured massive open clusters have been identified in the Milky Way. A very significant fraction of them lie either close to the base of the Scutum Arm or towards Galactic longitude of 350°. We are studying these clusters and their neighbourhoods, finding very good evidence for a major starburst region close to the near tip of the Galactic Long Bar.

VizieR Online Data Catalog: Shape parameters for 154 Galactic open clusters (Zhai+, 2017)

NASA Astrophysics Data System (ADS)

Zhai, M.; Abt, H.; Zhao, G.; Li, C.

2017-06-01

The data used are from database WEBDA (http://www.univie.ac.at/webda/). We have found 946 open clusters with equatorial coordinates for each cluster member. Since cluster members are easily contaminated by field stars, we have only adopted stars with membership probabilities higher than 70% as cluster members. It is rarely possible to determine a cluster's shape with a small number of members, so we have only considered relatively richer clusters, which host more than 20 of the most probable member stars. After these selections, there are 154 clusters left. (1 data file).

A CCD Search for Variable Stars of Spectral Type B in the Northern Hemisphere Open Clusters. IX. NGC 457

NASA Astrophysics Data System (ADS)

Moździerski, D.; Pigulski, A.; Kopacki, G.; Kołaczkowski, Z.; Stęślicki, M.

2014-06-01

We present results of a BVIC variability survey in the young open cluster NGC 457 based on observations obtained during three separate runs spanning almost 20 years. In total, we found 79 variable stars, of which 66 are new. The BVIC photometry was transformed to the standard system and used to derive cluster parameters by means of isochrone fitting. The cluster is about 20 Myr old, the mean reddening amounts to about 0.48 mag in terms of the color excess E(B-V). Depending on the metallicity, the isochrone fitting yields a distance between 2.3 kpc and 2.9 kpc, which locates the cluster in the Perseus arm of the Galaxy. Using the complementary Hα photometry carried out in two seasons separated by over 10 years, we find that the cluster is very rich in Be stars. In total, 15 stars in the observed field of which 14 are cluster members showed Hα in emission either during our observations or in the past. Most of the Be stars vary in brightness on different time scales including short-period variability related most likely to g-mode pulsations. A single-epoch spectrum of NGC 457-6 shows that this Be star is presently in the shell phase. The inventory of variable stars in the observed field consists of a single β Cep-type star, NGC 457-8, 13 Be stars, 21 slowly pulsating B stars, seven δ Sct stars, one γ Dor star, 16 unclassified periodic stars, 8 eclipsing systems and a dozen of stars with irregular variability, of which six are also B-type stars. As many as 45 variable stars are of spectral type B which is the largest number in all open clusters presented in this series of papers. The most interesting is the discovery of a large group of slowly pulsating B stars which occupy the cluster main sequence in the range between V=11 mag and 14.5 mag, corresponding to spectral types B3 to B8. They all have very low amplitudes and about half show pulsations with frequencies higher than 3 d-1. We argue that these are most likely fast-rotating slowly pulsating B stars, observed also in other open clusters.

Integrating Data Clustering and Visualization for the Analysis of 3D Gene Expression Data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Data Analysis and Visualization; nternational Research Training Group ``Visualization of Large and Unstructured Data Sets,'' University of Kaiserslautern, Germany; Computational Research Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA 94720, USA

2008-05-12

The recent development of methods for extracting precise measurements of spatial gene expression patterns from three-dimensional (3D) image data opens the way for new analyses of the complex gene regulatory networks controlling animal development. We present an integrated visualization and analysis framework that supports user-guided data clustering to aid exploration of these new complex datasets. The interplay of data visualization and clustering-based data classification leads to improved visualization and enables a more detailed analysis than previously possible. We discuss (i) integration of data clustering and visualization into one framework; (ii) application of data clustering to 3D gene expression data; (iii)more » evaluation of the number of clusters k in the context of 3D gene expression clustering; and (iv) improvement of overall analysis quality via dedicated post-processing of clustering results based on visualization. We discuss the use of this framework to objectively define spatial pattern boundaries and temporal profiles of genes and to analyze how mRNA patterns are controlled by their regulatory transcription factors.« less

The Open Cluster Chemical Abundances and Mapping (OCCAM) Survey: Optical Extension for Neutron Capture Elements

NASA Astrophysics Data System (ADS)

Melendez, Matthew; O'Connell, Julia; Frinchaboy, Peter M.; Donor, John; Cunha, Katia M. L.; Shetrone, Matthew D.; Majewski, Steven R.; Zasowski, Gail; Pinsonneault, Marc H.; Roman-Lopes, Alexandre; Stassun, Keivan G.; APOGEE Team

2017-01-01

The Open Cluster Chemical Abundance & Mapping (OCCAM) survey is a systematic survey of Galactic open clusters using data primarily from the SDSS-III/APOGEE-1 survey. However, neutron capture elements are very limited in the IR region covered by APOGEE. In an effort to fully study detailed Galactic chemical evolution, we are conducting a high resolution (R~60,000) spectroscopic abundance analysis of neutron capture elements for OCCAM clusters in the optical regime to complement the APOGEE results. As part of this effort, we present Ba II, La II, Ce II and Eu II results for a few open clusters without previous abundance measurements using data obtained at McDonald Observatory with the 2.1m Otto Struve telescope and Sandiford Echelle Spectrograph.This work is supported by an NSF AAG grant AST-1311835.

ABUNDANCES OF RED GIANTS IN OLD OPEN CLUSTERS. V. Be 31, Be 32, Be 39, M 67, NGC 188, AND NGC 1193

DOE Office of Scientific and Technical Information (OSTI.GOV)

Friel, Eileen D.; Jacobson, Heather R.; Pilachowski, Catherine A., E-mail: friel@lowell.ed, E-mail: jacob189@msu.ed, E-mail: catyp@astro.indiana.ed

2010-05-15

We present a detailed abundance analysis based on high resolution spectroscopy for 16 stars in the old open clusters Be 31, Be 32, Be 39, M 67, NGC 188, and NGC 1193. Average cluster metallicities of [Fe/H] = -0.30 {+-} 0.02, -0.21 {+-} 0.01, +0.03 {+-} 0.07, +0.12 {+-} 0.02, and -0.22 {+-} 0.14 (s.d.) have been found for Be 32, Be 39, M 67, NGC 188, and NGC 1193, respectively. The two stars observed in the field of Be 31 have disparate radial velocities and elemental abundance patterns, and also disagree with the possible Be 31 star studied bymore » Yong et al. We conclude that membership has yet to be established for this important cluster, and therefore no element abundances measured here or in previous studies of Be 31 should be taken as definitive cluster abundances. A careful comparison of our results for the clusters M 67 and Be 32 to those of other studies shows general good agreement and identifies systematic differences resulting from different analyses. After combination of our results with those of other studies for clusters spanning the full R{sub gc} range of the thin disk, we explore the abundance distributions as a function of R{sub gc} and age for the elements Fe, O, Na, Mg, Al, Si, Ca, Ti, and Ni. As found in previous work, the [Fe/H] gradient appears to be continuous up to R{sub gc} {approx} 13 kpc before flattening in the outer disk. [X/Fe] ratios show a scatter of 0.2-0.3 dex at all R{sub gc}, for all elements considered. The [X/Fe] values of the six clusters analyzed here are consistent with those of other clusters of similar metallicity and Galactocentric location. Our whole cluster sample shows trends of increasing [O/Fe] and [Al/Fe] with age, although these trends vanish with the inclusion of other clusters from the literature. Larger, homogeneous open cluster samples are necessary to verify the existence and magnitude of abundance trends with age.« less

Determining the Ages and Distances of 4 Open Clusters

NASA Astrophysics Data System (ADS)

Sawczynec, Erica A.; James D. Armstrong, Joe M. Ritter, Jeff Kuhn

2018-01-01

The study of nearby young open clusters can give insight into star formation and potentially the local rate of metal enrichment. Presented is a BVRI photometric analysis of 4 open clusters; NGC 2509, NGC 2483, NGC 2482, and NGC 6705, in order to reevaluate previously published ages and distances using modern CCD photometry, and newer stellar models. Observations were obtained from the Cerro Tololo node of the Las Cumbres Observatory 1.0 meter network. Color magnitude diagrams were compared to modeled isochrones and the updated ages and distances determined. An interesting stellar association was found in the color magnitude diagram of NGC 6705. The structure is suggestive of two epochs of stellar formation. Members of this structure were evaluated using the Gaia Archive in order to explore the possibility of a heterogeneous population. The status of NGC 2483 as an open cluster has been debated; however, it has been noted that there is a high concentration of Be stars found in the region. It is concluded that NGC 2483 is an open cluster.

On the assessment of the nature of open star clusters and the determination of their basic parameters with limited data

NASA Astrophysics Data System (ADS)

Carraro, Giovanni; Baume, Gustavo; Seleznev, Anton F.; Costa, Edgardo

2017-07-01

Our knowledge of stellar evolution and of the structure and chemical evolution of the Galactic disk largely builds on the study of open star clusters. Because of their crucial role in these relevant topics, large homogeneous catalogues of open cluster parameters are highly desirable. Although efforts have been made to develop automatic tools to analyse large numbers of clusters, the results obtained so far vary from study to study, and sometimes are very contradictory when compared to dedicated studies of individual clusters. In this work we highlight the common causes of these discrepancies for some open clusters, and show that at present dedicated studies yield a much better assessment of the nature of star clusters, even in the absence of ideal data-sets. We make use of deep, wide-field, multi-colour photometry to discuss the nature of six strategically selected open star clusters: Trumpler 22, Lynga 6, Hogg 19, Hogg 21, Pismis 10 and Pismis 14. We have precisely derived their basic parameters by means of a combination of star counts and photometric diagrams. Trumpler 22 and Lynga 6 are included in our study because they are widely known, and thus provided a check of our data and methodology. The remaining four clusters are very poorly known, and their available parameters have been obtained using automatic tools only. Our results are in some cases in severe disagreement with those from automatic surveys.

Dolidze-35: Results for a Possible Open Cluster

NASA Astrophysics Data System (ADS)

Gulledge, Deborah J.; Borges, Richard A.; Juelfs, Elizabeth; Allyn Smith, J.; Olive, Mary E.; McDonald, Christopher P.; Williams, Sarah M.; Cohen, Eden M.; Gawel, Jason D.; McCole, Bambi A.; Robertson, Jacob M.; Wilson, Tyler; Young, William J.; Buckner, Spencer L.; Allen, Nic R.; Head, H. Hope

2016-01-01

Dolidze-35 is an under-observed northern hemisphere open cluster. It is noted in WEBDA as "No data available for this cluster". As such, we chose this cluster as an undergraduate class project to investigate its existence. We present SDSS-ugriz magnitudes for the possible cluster and cross these with existing JHK data obtained from 2MASS. Selection of possible members is aided by the proper motion study of Krone-Martins (2010).

Effect of a new motorway on social-spatial patterning of road traffic accidents: A retrospective longitudinal natural experimental study

PubMed Central

Mitchell, Richard; Ogilvie, David

2017-01-01

Background The World Health Organisation reports that road traffic accidents (accidents) could become the seventh leading cause of death globally by 2030. Accidents often occur in spatial clusters and, generally, there are more accidents in less advantaged areas. Infrastructure changes, such as new roads, can affect the locations and magnitude of accident clusters but evidence of impact is lacking. A new 5-mile motorway extension was opened in 2011 in Glasgow, Scotland. Previous research found no impact on the number of accidents but did not consider their spatial location or socio-economic setting. We evaluated impacts on these, both locally and city-wide. Methods We used STATS19 data covering the period 2008 to 2014 and describing the location and details of all reported accidents involving a personal injury. Poisson-based continuous scan statistics were used to detect spatial clusters of accidents and any change in these over time. Change in the socio-economic distribution of accident cluster locations during the study period was also assessed. Results In each year accidents were strongly clustered, with statistically significant clusters more likely to occur in socio-economically deprived areas. There was no significant shift in the magnitude or location of accident clusters during motorway construction or following opening, either locally or city-wide. There was also no impact on the socio-economic patterning of accident cluster locations. Conclusions Although urban infrastructure changes occur constantly, all around the world, this is the first study to evaluate the impact of such changes on road accident clusters. Despite expectations to the contrary from both proponents and opponents of the M74 extension, we found no beneficial or adverse change in the socio-spatial distribution of accidents associated with its construction, opening or operation. Our approach and findings can help inform urban planning internationally. PMID:28880956

Effect of a new motorway on social-spatial patterning of road traffic accidents: A retrospective longitudinal natural experimental study.

PubMed

Olsen, Jonathan R; Mitchell, Richard; Ogilvie, David

2017-01-01

The World Health Organisation reports that road traffic accidents (accidents) could become the seventh leading cause of death globally by 2030. Accidents often occur in spatial clusters and, generally, there are more accidents in less advantaged areas. Infrastructure changes, such as new roads, can affect the locations and magnitude of accident clusters but evidence of impact is lacking. A new 5-mile motorway extension was opened in 2011 in Glasgow, Scotland. Previous research found no impact on the number of accidents but did not consider their spatial location or socio-economic setting. We evaluated impacts on these, both locally and city-wide. We used STATS19 data covering the period 2008 to 2014 and describing the location and details of all reported accidents involving a personal injury. Poisson-based continuous scan statistics were used to detect spatial clusters of accidents and any change in these over time. Change in the socio-economic distribution of accident cluster locations during the study period was also assessed. In each year accidents were strongly clustered, with statistically significant clusters more likely to occur in socio-economically deprived areas. There was no significant shift in the magnitude or location of accident clusters during motorway construction or following opening, either locally or city-wide. There was also no impact on the socio-economic patterning of accident cluster locations. Although urban infrastructure changes occur constantly, all around the world, this is the first study to evaluate the impact of such changes on road accident clusters. Despite expectations to the contrary from both proponents and opponents of the M74 extension, we found no beneficial or adverse change in the socio-spatial distribution of accidents associated with its construction, opening or operation. Our approach and findings can help inform urban planning internationally.

An open source software for fast grid-based data-mining in spatial epidemiology (FGBASE).

PubMed

Baker, David M; Valleron, Alain-Jacques

2014-10-30

Examining whether disease cases are clustered in space is an important part of epidemiological research. Another important part of spatial epidemiology is testing whether patients suffering from a disease are more, or less, exposed to environmental factors of interest than adequately defined controls. Both approaches involve determining the number of cases and controls (or population at risk) in specific zones. For cluster searches, this often must be done for millions of different zones. Doing this by calculating distances can lead to very lengthy computations. In this work we discuss the computational advantages of geographical grid-based methods, and introduce an open source software (FGBASE) which we have created for this purpose. Geographical grids based on the Lambert Azimuthal Equal Area projection are well suited for spatial epidemiology because they preserve area: each cell of the grid has the same area. We describe how data is projected onto such a grid, as well as grid-based algorithms for spatial epidemiological data-mining. The software program (FGBASE), that we have developed, implements these grid-based methods. The grid based algorithms perform extremely fast. This is particularly the case for cluster searches. When applied to a cohort of French Type 1 Diabetes (T1D) patients, as an example, the grid based algorithms detected potential clusters in a few seconds on a modern laptop. This compares very favorably to an equivalent cluster search using distance calculations instead of a grid, which took over 4 hours on the same computer. In the case study we discovered 4 potential clusters of T1D cases near the cities of Le Havre, Dunkerque, Toulouse and Nantes. One example of environmental analysis with our software was to study whether a significant association could be found between distance to vineyards with heavy pesticide. None was found. In both examples, the software facilitates the rapid testing of hypotheses. Grid-based algorithms for mining spatial epidemiological data provide advantages in terms of computational complexity thus improving the speed of computations. We believe that these methods and this software tool (FGBASE) will lower the computational barriers to entry for those performing epidemiological research.

STAR CLUSTERS IN M33: UPDATED UBVRI PHOTOMETRY, AGES, METALLICITIES, AND MASSES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fan, Zhou; De Grijs, Richard, E-mail: zfan@bao.ac.cn, E-mail: grijs@pku.edu.cn

2014-04-01

The photometric characterization of M33 star clusters is far from complete. In this paper, we present homogeneous UBVRI photometry of 708 star clusters and cluster candidates in M33 based on archival images from the Local Group Galaxies Survey, which covers 0.8 deg{sup 2} along the galaxy's major axis. Our photometry includes 387, 563, 616, 580, and 478 objects in the UBVRI bands, respectively, of which 276, 405, 430, 457, and 363 do not have previously published UBVRI photometry. Our photometry is consistent with previous measurements (where available) in all filters. We adopted Sloan Digital Sky Survey ugriz photometry for complementarymore » purposes, as well as Two Micron All Sky Survey near-infrared JHK photometry where available. We fitted the spectral-energy distributions of 671 star clusters and candidates to derive their ages, metallicities, and masses based on the updated PARSEC simple stellar populations synthesis models. The results of our χ{sup 2} minimization routines show that only 205 of the 671 clusters (31%) are older than 2 Gyr, which represents a much smaller fraction of the cluster population than that in M31 (56%), suggesting that M33 is dominated by young star clusters (<1 Gyr). We investigate the mass distributions of the star clusters—both open and globular clusters—in M33, M31, the Milky Way, and the Large Magellanic Cloud. Their mean values are log (M {sub cl}/M {sub ☉}) = 4.25, 5.43, 2.72, and 4.18, respectively. The fraction of open to globular clusters is highest in the Milky Way and lowest in M31. Our comparisons of the cluster ages, masses, and metallicities show that our results are basically in agreement with previous studies (where objects in common are available); differences can be traced back to differences in the models adopted, the fitting methods used, and stochastic sampling effects.« less

Differential Behavior within a Grapevine Cluster: Decreased Ethylene-Related Gene Expression Dependent on Auxin Transport Is Correlated with Low Abscission of First Developed Berries

PubMed Central

Godoy, Francisca; Delrot, Serge; Arce-Johnson, Patricio

2014-01-01

In grapevine, fruit abscission is known to occur within the first two to three weeks after flowering, but the reason why some berries in a cluster persist and others abscise is not yet understood. Ethylene sensitivity modulates abscission in several fruit species, based on a mechanism where continuous polar auxin transport across the pedicel results in a decrease in ethylene perception, which prevents abscission. In grapevine, flowering takes about four to seven days in a single cluster, thus while some flowers are developing into berries, others are just starting to open. So, in this work it was assessed whether uneven flowering accounted for differences in berry abscission dependent on polar auxin transport and ethylene-related gene expression. For this, flowers that opened in a cluster were tagged daily, which allowed to separately analyze berries, regarding their ability to persist. It was found that berries derived from flowers that opened the day that flowering started – named as “first berries” – had lower abscission rate than berries derived from flowers that opened during the following days – named as “late berries”. Use of radiolabeled auxin showed that “first berries” had higher polar auxin transport, correlated with lower ethylene content and lower ethylene-related transcript abundance than “late berries”. When “first berries” were treated with a polar auxin transport inhibitor they showed higher ethylene-related transcript abundance and were more prone to abscise than control berries. This study provides new insights on fruit abscission control. Our results indicate that polar auxin transport sustains the ability of “first berries” to persist in the cluster during grapevine abscission and also suggest that this could be associated with changes in ethylene-related gene expression. PMID:25365421

Open Cluster Dynamics via Fundamental Plane

NASA Astrophysics Data System (ADS)

Lin, Chien-Cheng; Pang, Xiao-Ying

2018-04-01

Open clusters (OCs) are important objects for stellar dynamics studies. The short survival timescale of OCs makes them closely related to the formation of Galactic field stars. We motivate to investigate the dynamical evolution of OCs on the aspect of internal effect and the external influence. Firstly, we make use of the known OC catalog to obtain OCs masses, effective radii. Additionally, we estimate OCs kinematics properties by OC members cross-matched with radial velocity and metallicity from SDSSIV/APOGEE2. We then establish the fundamental plane of OCs based on the radial velocity dispersion, the effective radius, and average surface brightness. The deviation of the fundamental plane from the Virial Plane, so called the tilt, and the r.m.s. dispersion of OCs around the average plane are used to indicate the dynamical status of OCs. Parameters of the fitted plane will vary with cluster age and distance.

Value, Cost, and Sharing: Open Issues in Constrained Clustering

NASA Technical Reports Server (NTRS)

Wagstaff, Kiri L.

2006-01-01

Clustering is an important tool for data mining, since it can identify major patterns or trends without any supervision (labeled data). Over the past five years, semi-supervised (constrained) clustering methods have become very popular. These methods began with incorporating pairwise constraints and have developed into more general methods that can learn appropriate distance metrics. However, several important open questions have arisen about which constraints are most useful, how they can be actively acquired, and when and how they should be propagated to neighboring points. This position paper describes these open questions and suggests future directions for constrained clustering research.

The Membership and Distance of the Open Cluster Collinder 419

DTIC Science & Technology

2010-09-01

distance based upon new spectral classifications of the brighter members, UBV photometry , and an analysis of astrometric and photometric data from the... photometry of the fainter cluster members in Section 4. Our results are summarized in Section 5. 2. SPECTROSCOPY AND REDDENING OF THE BRIGHTER STARS...including the time for reviewing instructions, searching existing data sources, gathering and maintaining the data needed, and completing and reviewing

Stochastic Sampling in the IMF of Galactic Open Clusters

NASA Astrophysics Data System (ADS)

Kay, Christina; Hancock, M.; Canalizo, G.; Smith, B. J.; Giroux, M. L.

2010-01-01

We sought observational evidence of the effects of stochastic sampling of the initial mass function by investigating the integrated colors of a sample of Galactic open clusters. In particular we looked for scatter in the integrated (V-K) color as previous research resulted in little scatter in the (U-B) and (B-V) colors. Combining data from WEBDA and 2MASS we determined three different colors for 287 open clusters. Of these clusters, 39 have minimum uncertainties in age and formed a standard set. A plot of the (V-K) color versus age showed much more scatter than the (U-B) versus age. We also divided the sample into two groups based on a lowest luminosity limit which is a function of age and V magnitude. We expected the group of clusters fainter than this limit to show more scatter than the brighter group. Assuming the published ages, we compared the reddening corrected observed colors to those predicted by Starburst99. The presence of stochastic sampling should increase scatter in the distribution of the differences between observed and model colors of the fainter group relative to the brighter group. However, we found that K-S tests cannot rule out that the distribution of color difference for the brighter and fainter sets come from the same parent distribution. This indistinguishabilty may result from uncertainties in the parameters used to define the groups. This result constrains the size of the effects of stochastic sampling of the initial mass function.

Multi-documents summarization based on clustering of learning object using hierarchical clustering

NASA Astrophysics Data System (ADS)

Mustamiin, M.; Budi, I.; Santoso, H. B.

2018-03-01

The Open Educational Resources (OER) is a portal of teaching, learning and research resources that is available in public domain and freely accessible. Learning contents or Learning Objects (LO) are granular and can be reused for constructing new learning materials. LO ontology-based searching techniques can be used to search for LO in the Indonesia OER. In this research, LO from search results are used as an ingredient to create new learning materials according to the topic searched by users. Summarizing-based grouping of LO use Hierarchical Agglomerative Clustering (HAC) with the dependency context to the user’s query which has an average value F-Measure of 0.487, while summarizing by K-Means F-Measure only has an average value of 0.336.

WIYN open cluster study: photometric determination of binary mass ratios

NASA Astrophysics Data System (ADS)

Cai, Kai; Durisen, Richard H.; Deliyannis, Constantine P.

Taking advantage of WIYN Open Cluster Survey (WOCS) precision photometry, we have developed a method using appropriate Yonsei-Yale Isochrones to determine primary masses M2 and q (=M2/M1) for cluster binary stars and applied it to proper motion members of M35.

Membership and Coronal Activity in the NGC 2232 and Cr 140 Open Clusters

NASA Technical Reports Server (NTRS)

Oliversen, Ronald J. (Technical Monitor); Patten, Brian M.

2004-01-01

Making use of eight archival ROSAT HRI images in the regions of the NGC 2232 and Cr 140, this project's primary focus is to identify X-ray sources and to extract net source counts for these sources in these two open clusters. These X-ray data would be combined with ground-based photometry and spectroscopy in order to identify G, K, and early-M type cluster members. Such membership data are important because, at present, no members later than spectral type approx. F5 are currently known for either cluster. With ages estimated to be approx. 25 Myr and at distances of just approx. 350 pc, the combined late-type membership of the NGC 2232 and Cr 140 clusters would yield an almost unique sample of solar-type stars in the post-T Tauri/pre-main sequence phase of evolution. These stars could be used to assess the level and dispersion of coronal activity levels, as a part of a probe of the importance of magnetic braking and the level of magnetic dynamo activity, for solar-type stars just before they reach the zero-age main sequence.

Cluster membership probability: polarimetric approach

NASA Astrophysics Data System (ADS)

Medhi, Biman J.; Tamura, Motohide

2013-04-01

Interstellar polarimetric data of the six open clusters Hogg 15, NGC 6611, NGC 5606, NGC 6231, NGC 5749 and NGC 6250 have been used to estimate the membership probability for the stars within them. For proper-motion member stars, the membership probability estimated using the polarimetric data is in good agreement with the proper-motion cluster membership probability. However, for proper-motion non-member stars, the membership probability estimated by the polarimetric method is in total disagreement with the proper-motion cluster membership probability. The inconsistencies in the determined memberships may be because of the fundamental differences between the two methods of determination: one is based on stellar proper motion in space and the other is based on selective extinction of the stellar output by the asymmetric aligned dust grains present in the interstellar medium. The results and analysis suggest that the scatter of the Stokes vectors q (per cent) and u (per cent) for the proper-motion member stars depends on the interstellar and intracluster differential reddening in the open cluster. It is found that this method could be used to estimate the cluster membership probability if we have additional polarimetric and photometric information for a star to identify it as a probable member/non-member of a particular cluster, such as the maximum wavelength value (λmax), the unit weight error of the fit (σ1), the dispersion in the polarimetric position angles (overline{ɛ }), reddening (E(B - V)) or the differential intracluster reddening (ΔE(B - V)). This method could also be used to estimate the membership probability of known member stars having no membership probability as well as to resolve disagreements about membership among different proper-motion surveys.

Form gene clustering method about pan-ethnic-group products based on emotional semantic

NASA Astrophysics Data System (ADS)

Chen, Dengkai; Ding, Jingjing; Gao, Minzhuo; Ma, Danping; Liu, Donghui

2016-09-01

The use of pan-ethnic-group products form knowledge primarily depends on a designer's subjective experience without user participation. The majority of studies primarily focus on the detection of the perceptual demands of consumers from the target product category. A pan-ethnic-group products form gene clustering method based on emotional semantic is constructed. Consumers' perceptual images of the pan-ethnic-group products are obtained by means of product form gene extraction and coding and computer aided product form clustering technology. A case of form gene clustering about the typical pan-ethnic-group products is investigated which indicates that the method is feasible. This paper opens up a new direction for the future development of product form design which improves the agility of product design process in the era of Industry 4.0.

Core Collapse: The Race Between Stellar Evolution and Binary Heating

NASA Astrophysics Data System (ADS)

Converse, Joseph M.; Chandar, R.

2012-01-01

The dynamical formation of binary stars can dramatically affect the evolution of their host star clusters. In relatively small clusters (M < 6000 Msun) the most massive stars rapidly form binaries, heating the cluster and preventing any significant contraction of the core. The situation in much larger globular clusters (M 105 Msun) is quite different, with many showing collapsed cores, implying that binary formation did not affect them as severely as lower mass clusters. More massive clusters, however, should take longer to form their binaries, allowing stellar evolution more time to prevent the heating by causing the larger stars to die off. Here, we simulate the evolution of clusters between those of open and globular clusters in order to find at what size a star cluster is able to experience true core collapse. Our simulations make use of a new GPU-based computing cluster recently purchased at the University of Toledo. We also present some benchmarks of this new computational resource.

Implementation of Grid Tier 2 and Tier 3 facilities on a Distributed OpenStack Cloud

NASA Astrophysics Data System (ADS)

Limosani, Antonio; Boland, Lucien; Coddington, Paul; Crosby, Sean; Huang, Joanna; Sevior, Martin; Wilson, Ross; Zhang, Shunde

2014-06-01

The Australian Government is making a AUD 100 million investment in Compute and Storage for the academic community. The Compute facilities are provided in the form of 30,000 CPU cores located at 8 nodes around Australia in a distributed virtualized Infrastructure as a Service facility based on OpenStack. The storage will eventually consist of over 100 petabytes located at 6 nodes. All will be linked via a 100 Gb/s network. This proceeding describes the development of a fully connected WLCG Tier-2 grid site as well as a general purpose Tier-3 computing cluster based on this architecture. The facility employs an extension to Torque to enable dynamic allocations of virtual machine instances. A base Scientific Linux virtual machine (VM) image is deployed in the OpenStack cloud and automatically configured as required using Puppet. Custom scripts are used to launch multiple VMs, integrate them into the dynamic Torque cluster and to mount remote file systems. We report on our experience in developing this nation-wide ATLAS and Belle II Tier 2 and Tier 3 computing infrastructure using the national Research Cloud and storage facilities.

New red giant star in the Kepler open cluster NGC 6819

NASA Astrophysics Data System (ADS)

Komucyeya, E.; Abedigamba, O. P.; Jurua, E.; Anguma, S. K.

2018-05-01

A recent study indicated that 39 red giant stars showing solar-like oscillations were discovered in the field of Kepleropen cluster NGC 6819. The study was based on photometric distance estimates of 27 stars out of the 39. Using photometric method alone may not be adequate to confirm the membership of these stars. The stars were not previously known in literature to belong to the open cluster NGC 6819. In this study, Kepler data was used to study the membership of the 27 stars. A plot of apparent magnitude as a function of the large frequency separation, supplemented with the proper motion and radial velocity values from literature revealed KIC 5112840 to lie on the same plane with the well known members of the cluster. Echelle diagram was constructed, and the median gravity-mode period spacings (ΔP) calculated for KIC 5112840. A value of ΔP = 66.3 s was obtained, thus placing the red giant star KIC 5112840 on the Red Giant Branch stage of evolution. Our evolutionary status result using the approach in this paper is in agreement with what is in the available literature.

WIYN OPEN CLUSTER STUDY. XXXVI. SPECTROSCOPIC BINARY ORBITS IN NGC 188

DOE Office of Scientific and Technical Information (OSTI.GOV)

Geller, Aaron M.; Mathieu, Robert D.; Harris, Hugh C.

2009-04-15

We present 98 spectroscopic binary orbits resulting from our ongoing radial velocity survey of the old (7 Gyr) open cluster NGC 188. All but 13 are high-probability cluster members based on both radial velocity and proper motion membership analyses. Fifteen of these member binaries are double lined. Our stellar sample spans a magnitude range of 10.8 {<=}V{<=} 16.5 (1.14-0.92 M {sub sun}) and extends spatially to 17 pc ({approx}13 core radii). All of our binary orbits have periods ranging from a few days to on the order of 10{sup 3} days, and thus are hard binaries that dynamically power themore » cluster. For each binary, we present the orbital solutions and place constraints on the component masses. Additionally, we discuss a few binaries of note from our sample, identifying a likely blue straggler-blue straggler binary system (7782), a double-lined binary with a secondary star which is underluminous for its mass (5080), two potential eclipsing binaries (4705 and 5762), and two binaries which are likely members of a quadruple system (5015a and 5015b)« less

Analysis of Spectral-type A/B Stars in Five Open Clusters

NASA Astrophysics Data System (ADS)

Wilhelm, Ronald J.; Rafuil Islam, M.

2014-01-01

We have obtained low resolution (R = 1000) spectroscopy of N=68, spectral-type A/B stars in five nearby open star clusters using the McDonald Observatory, 2.1m telescope. The sample of blue stars in various clusters were selected to test our new technique for determining interstellar reddening and distances in areas where interstellar reddening is high. We use a Bayesian approach to find the posterior distribution for Teff, Logg and [Fe/H] from a combination of reddened, photometric colors and spectroscopic line strengths. We will present calibration results for this technique using open cluster star data with known reddening and distances. Preliminary results suggest our technique can produce both reddening and distance determinations to within 10% of cluster values. Our technique opens the possibility of determining distances for blue stars at low Galactic latitudes where extinction can be large and differential. We will also compare our stellar parameter determinations to previously reported MK spectral classifications and discuss the probability that some of our stars are not members of their reported clusters.

Open clusters as laboratories: The angular momentum evolution of young stars

NASA Technical Reports Server (NTRS)

Stauffer, John R.

1994-01-01

This is the annual status report for the third year of our LTSA grant 'Open Clusters as Laboratories.' Because we have now had a few years to work on the project, we have started to produce and publish a large number of papers. We have been extremely successful in obtaining ROSAT observations of open clusters. With the demise of the PSPC on ROSAT, our main data source has come to an end and we will be able to concentrate on analyzing those data.

Photometric and integrated spectral study of the young open clusters Pismis 22, NGC 6178, NGC 6216 and Ruprecht 130

NASA Astrophysics Data System (ADS)

Piatti, A. E.; Clariá, J. J.; Bica, E.

2000-08-01

We present CCD observations in the B, V , and I passbands obtained for stars in the fields of the open clusters Pismis 22, NGC 6178, NGC 6216, and Ruprecht 130, projected not far from the Galactic centre (|l| < 30̂, |b| < 2̂). The sample consists of about 790 stars reaching down to V ~ 18-19 mag. From the analysis of the colour magnitude diagrams, we confirmed the physical reality of the clusters and derived their reddening, distance and age. In addition, we obtained flux-calibrated integrated spectra in the range 3500-9200 Å for the cluster sample. The equivalent widths of the Balmer lines provided us with age estimates, while the comparison with template spectra allowed us to derive both foreground reddening and age. The photometric and spectroscopic results reveal that the four studied objects are young open clusters with ages ranging between 35 and 50 Myr. The clusters, located between 1.0 kpc and 4.3 kpc from the Sun, are affected by different amounts of interstellar visual absorption (0.6 ≃ Av ≃ 6.0). Based on observations made at Complejo Astronómico El Leoncito, which is operated under agreement between the Consejo Nacional de Investigaciones Científicas y Técnicas de la Repúbica Argentina and the National Universities of La Plata, Córdoba, and San Juan, Argentina, and at the University of Toronto (David Dunlap Observatory) 24-inch telescope, Las Campanas, Chile. Tables 3-6 are only available in electronic form at the CDS via anonymous ftp to cdsarc.u-strasbg.fr (130.79.128.5) or via http://cdsweb.u-strasbg.fr/Abstract.html

Star clusters in the Magellanic Clouds - I. Parametrization and classification of 1072 clusters in the LMC

NASA Astrophysics Data System (ADS)

Nayak, P. K.; Subramaniam, A.; Choudhury, S.; Indu, G.; Sagar, Ram

2016-12-01

We have introduced a semi-automated quantitative method to estimate the age and reddening of 1072 star clusters in the Large Magellanic Cloud (LMC) using the Optical Gravitational Lensing Experiment III survey data. This study brings out 308 newly parametrized clusters. In a first of its kind, the LMC clusters are classified into groups based on richness/mass as very poor, poor, moderate and rich clusters, similar to the classification scheme of open clusters in the Galaxy. A major cluster formation episode is found to happen at 125 ± 25 Myr in the inner LMC. The bar region of the LMC appears prominently in the age range 60-250 Myr and is found to have a relatively higher concentration of poor and moderate clusters. The eastern and the western ends of the bar are found to form clusters initially, which later propagates to the central part. We demonstrate that there is a significant difference in the distribution of clusters as a function of mass, using a movie based on the propagation (in space and time) of cluster formation in various groups. The importance of including the low-mass clusters in the cluster formation history is demonstrated. The catalogue with parameters, classification, and cleaned and isochrone fitted colour-magnitude diagrams of 1072 clusters, which are available as online material, can be further used to understand the hierarchical formation of clusters in selected regions of the LMC.

[Time for cluster C personality disorders: state of the art].

PubMed

Hutsebaut, J; Willemsen, E M C; Van, H L

Compared to cluster B personality disorders, the assessment and treatment of people with obsessive-compulsive, dependent, and avoidant personality disorders (cluster C) is given little attention in the field of research and clinical practice. Presenting the current state of affairs in regard to cluster C personality disorders. A systematic literature search was conducted using the main data bases. Cluster C personality disorders are present in approximately 3-9% of the general population. In about half of the cases of mood, anxiety, and eating disorders, there is co-morbid cluster C pathology. This has a major influence on the progression of symptoms, treatment effectiveness and potential relapse. There are barely any well conducted randomized studies on the treatment of cluster-C in existence. Open cohort studies, however, show strong, lasting treatment effects. Given the frequent occurrence of cluster C personality disorders, the burden of disease, associated societal costs and the prognostic implications in case of a co-morbid cluster C personality disorder, early detection and treatment of these disorders is warranted.

Estudio de la población estelar de varios cúmulos en Carina

NASA Astrophysics Data System (ADS)

Molina-Lera, J. A.; Baume, G. L.; Carraro, G.; Costa, E.

2015-08-01

Based on deep photometric data in the bands, complemented with infrared 2MASS data, we conducted an analysis of the fundamental parameters of six open clusters located in the Carina region. To perform a systematic study we developed a specialized code. In particular, we investigated the behavior of the respective lower main sequences. Our analysis indicated the presence of a significant population of pre-sequence stars in several of the clusters. We therefore obtained estimated values of contraction ages. Furthermore, we have determined the slopes of the initial mass functions of the studied clusters.

A Study of The Binary and Anomalous Stellar Populations in Two Intermediate-Aged Open Clusters

NASA Astrophysics Data System (ADS)

Mathieu, Robert D.; Milliman, Katelyn; Geller, Aaron M.; Gosnell, Natalie

2010-08-01

``Anomalous'' stars, such as blue stragglers and more recently sub- subgiants, have been an enduring challenge for stellar evolution theory. It is now clear that in star clusters these systems are closely linked to the binary star populations. Furthermore, sophisticated N-body models show that stellar dynamical processes play a central role in the formation of such anomalous stars. These stars trace the interface between the classical fields of stellar evolution and stellar dynamics. We propose to expand our highly successful radial-velocity survey to include two new rich open clusters NGC 7789 (1.8 Gyr, -0.1 dex) and NGC 2506 (2.1 Gyr, -0.4 dex) as part of the WIYN Open Cluster Study (WOCS). Though these two clusters are both of intermediate age and of similar richness, they have quite different blue straggler populations. NGC 2506 has only 10 known blue stragglers, while NGC 7789 has at least 27, among the largest known populations of blue stragglers in an open cluster. Defining the hard-binary populations in these two clusters is critical for understanding the factors that determine blue straggler production rates. Our proposed observations will establish the hard- binary fraction and frequency distributions of orbital parameters (periods, eccentricities, mass-ratios, etc.) for orbital periods approaching the hard-soft boundary, and will provide a comprehensive survey of the blue stragglers and other anomalous stars, including secure cluster memberships and binary properties. These data will then form direct constraints for detailed N-body open cluster simulations from which we will study the impact of the hard-binary population on the production rates and mechanisms of blue stragglers.

Open clusters in Auriga OB2

NASA Astrophysics Data System (ADS)

Marco, Amparo; Negueruela, Ignacio

2016-06-01

We study the area around the H II region Sh 2-234, including the young open cluster Stock 8, to investigate the extent and definition of the association Aur OB2 and the possible role of triggering in massive cluster formation. We obtained Strömgren and J, H, KS photometry for Stock 8 and Strömgren photometry for two other cluster candidates in the area, which we confirm as young open clusters and name Alicante 11 and Alicante 12. We took spectroscopy of ˜33 early-type stars in the area, including the brightest cluster members. We calculate a common distance of 2.80^{+0.27}_{-0.24} kpc for the three open clusters and surrounding association. We derive an age 4-6 Ma for Stock 8, and do not find a significantly different age for the other clusters or the association. The star LS V +34°23, with spectral type O8 II(f), is likely the main source of ionization of Sh 2-234. We observe an important population of pre-main-sequence stars, some of them with discs, associated with the B-type members lying on the main sequence. We interpret the region as an area of recent star formation with some residual and very localized ongoing star formation. We do not find evidence for sequential star formation on a large scale. The classical definition of Aur OB2 has to be reconsidered, because its two main open clusters, Stock 8 and NGC 1893, are not at the same distance. Stock 8 is probably located in the Perseus arm, but other nearby H II regions whose distances also place them in this arm show quite different distances and radial velocities and, therefore, are not connected.

Photometry Using Kepler "Superstamps" of Open Clusters NGC 6791 & NGC 6819

NASA Astrophysics Data System (ADS)

Kuehn, Charles A.; Drury, Jason A.; Bellamy, Beau R.; Stello, Dennis; Bedding, Timothy R.; Reed, Mike; Quick, Breanna

2015-09-01

The Kepler space telescope has proven to be a gold mine for the study of variable stars. Usually, Kepler only reads out a handful of pixels around each pre-selected target star, omitting a large number of stars in the Kepler field. Fortunately, for the open clusters NGC 6791 and NGC 6819, Kepler also read out larger "superstamps" which contained complete images of the central region of each cluster. These cluster images can be used to study additional stars in the open clusters that were not originally on Kepler's target list. We discuss our work on using two photometric techniques to analyze these superstamps and present sample results from this project to demonstrate the value of this technique for a wide variety of variable stars.

Dynamic and Contextual Information in HMM Modeling for Handwritten Word Recognition.

PubMed

Bianne-Bernard, Anne-Laure; Menasri, Farès; Al-Hajj Mohamad, Rami; Mokbel, Chafic; Kermorvant, Christopher; Likforman-Sulem, Laurence

2011-10-01

This study aims at building an efficient word recognition system resulting from the combination of three handwriting recognizers. The main component of this combined system is an HMM-based recognizer which considers dynamic and contextual information for a better modeling of writing units. For modeling the contextual units, a state-tying process based on decision tree clustering is introduced. Decision trees are built according to a set of expert-based questions on how characters are written. Questions are divided into global questions, yielding larger clusters, and precise questions, yielding smaller ones. Such clustering enables us to reduce the total number of models and Gaussians densities by 10. We then apply this modeling to the recognition of handwritten words. Experiments are conducted on three publicly available databases based on Latin or Arabic languages: Rimes, IAM, and OpenHart. The results obtained show that contextual information embedded with dynamic modeling significantly improves recognition.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gomez, John A.; Henderson, Thomas M.; Scuseria, Gustavo E.

Restricted single-reference coupled cluster theory truncated to single and double excitations accurately describes weakly correlated systems, but often breaks down in the presence of static or strong correlation. Good coupled cluster energies in the presence of degeneracies can be obtained by using a symmetry-broken reference, such as unrestricted Hartree-Fock, but at the cost of good quantum numbers. A large body of work has shown that modifying the coupled cluster ansatz allows for the treatment of strong correlation within a single-reference, symmetry-adapted framework. The recently introduced singlet-paired coupled cluster doubles (CCD0) method is one such model, which recovers correct behavior formore » strong correlation without requiring symmetry breaking in the reference. Here, we extend singlet-paired coupled cluster for application to open shells via restricted open-shell singlet-paired coupled cluster singles and doubles (ROCCSD0). The ROCCSD0 approach retains the benefits of standard coupled cluster theory and recovers correct behavior for strongly correlated, open-shell systems using a spin-preserving ROHF reference.« less

ClusterViz: A Cytoscape APP for Cluster Analysis of Biological Network.

PubMed

Wang, Jianxin; Zhong, Jiancheng; Chen, Gang; Li, Min; Wu, Fang-xiang; Pan, Yi

2015-01-01

Cluster analysis of biological networks is one of the most important approaches for identifying functional modules and predicting protein functions. Furthermore, visualization of clustering results is crucial to uncover the structure of biological networks. In this paper, ClusterViz, an APP of Cytoscape 3 for cluster analysis and visualization, has been developed. In order to reduce complexity and enable extendibility for ClusterViz, we designed the architecture of ClusterViz based on the framework of Open Services Gateway Initiative. According to the architecture, the implementation of ClusterViz is partitioned into three modules including interface of ClusterViz, clustering algorithms and visualization and export. ClusterViz fascinates the comparison of the results of different algorithms to do further related analysis. Three commonly used clustering algorithms, FAG-EC, EAGLE and MCODE, are included in the current version. Due to adopting the abstract interface of algorithms in module of the clustering algorithms, more clustering algorithms can be included for the future use. To illustrate usability of ClusterViz, we provided three examples with detailed steps from the important scientific articles, which show that our tool has helped several research teams do their research work on the mechanism of the biological networks.

New Wolf-Rayet stars in Galactic open clusters - Sher 1 and the giant H II region core Westerlund 2

NASA Technical Reports Server (NTRS)

Moffat, Anthony F. J.; Shara, Michael M.; Potter, Michael

1991-01-01

Two new Galactic Wolf-Rayet stars were found in open clusters: a WN4 star in the O9 cluster Sher 1 and a WN7 star in the O7 cluster Westerlund 2. This confirms a previous trend, namely that fainter, hotter WN stars tend to be older than brighter, cooler WN stars. This may be a consequence of evolution via extreme mass loss.

Comparing the OpenMP, MPI, and Hybrid Programming Paradigm on an SMP Cluster

NASA Technical Reports Server (NTRS)

Jost, Gabriele; Jin, Hao-Qiang; anMey, Dieter; Hatay, Ferhat F.

2003-01-01

Clusters of SMP (Symmetric Multi-Processors) nodes provide support for a wide range of parallel programming paradigms. The shared address space within each node is suitable for OpenMP parallelization. Message passing can be employed within and across the nodes of a cluster. Multiple levels of parallelism can be achieved by combining message passing and OpenMP parallelization. Which programming paradigm is the best will depend on the nature of the given problem, the hardware components of the cluster, the network, and the available software. In this study we compare the performance of different implementations of the same CFD benchmark application, using the same numerical algorithm but employing different programming paradigms.

Yellow evolved stars in open clusters

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sowell, J.R.

1987-05-01

This paper describes a program in which Galactic cluster post-AGB candidates were first identified and then analyzed for cluster membership via radial velocities, monitored for possible photometric variations, examined for evidence of mass loss, and classified as completely as possible in terms of their basic stellar parameters. The intrinsically brightest supergiants are found in the youngest clusters. With increasing cluster age, the absolute luminosities attained by the supergiants decline. It appears that the evolutionary tracks of luminosity class II stars are more similar to those of class I than of class III. Only two superluminous giant star candidates are foundmore » in open clusters. 154 references.« less

Transition paths of Met-enkephalin from Markov state modeling of a molecular dynamics trajectory.

PubMed

Banerjee, Rahul; Cukier, Robert I

2014-03-20

Conformational states and their interconversion pathways of the zwitterionic form of the pentapeptide Met-enkephalin (MetEnk) are identified. An explicit solvent molecular dynamics (MD) trajectory is used to construct a Markov state model (MSM) based on dihedral space clustering of the trajectory, and transition path theory (TPT) is applied to identify pathways between open and closed conformers. In the MD trajectory, only four of the eight backbone dihedrals exhibit bistable behavior. Defining a conformer as the string XXXX with X = "+" or "-" denoting, respectively, positive or negative values of a given dihedral angle and obtaining the populations of these conformers shows that only four conformers are highly populated, implying a strong correlation among these dihedrals. Clustering in dihedral space to construct the MSM finds the same four bistable dihedral angles. These state populations are very similar to those found directly from the MD trajectory. TPT is used to obtain pathways, parametrized by committor values, in dihedral state space that are followed in transitioning from closed to open states. Pathway costs are estimated by introducing a kinetics-based procedure that orders pathways from least (shortest) to greater cost paths. The least costly pathways in dihedral space are found to only involve the same XXXX set of dihedral angles, and the conformers accessed in the closed to open transition pathways are identified. For these major pathways, a correlation between reaction path progress (committors) and the end-to-end distance is identified. A dihedral space principal component analysis of the MD trajectory shows that the first three modes capture most of the overall fluctuation, and pick out the same four dihedrals having essentially all the weight in those modes. A MSM based on root-mean-square backbone clustering was also carried out, with good agreement found with dihedral clustering for the static information, but with results that differ significantly for the pathway analysis.

THE YOUNG OPEN CLUSTERS KING 12, NGC 7788, AND NGC 7790: PRE-MAIN-SEQUENCE STARS AND EXTENDED STELLAR HALOS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Davidge, T. J.

2012-12-20

The stellar contents of the open clusters King 12, NGC 7788, and NGC 7790 are investigated using MegaCam images. Comparisons with isochrones yield an age <20 Myr for King 12, 20-40 Myr for NGC 7788, and 60-80 Myr for NGC 7790 based on the properties of stars near the main-sequence turnoff (MSTO) in each cluster. The reddening of NGC 7788 is much larger than previously estimated. The luminosity functions (LFs) of King 12 and NGC 7788 show breaks that are attributed to the onset of pre-main-sequence (PMS) objects, and comparisons with models of PMS evolution yield ages that are consistentmore » with those measured from stars near the MSTO. In contrast, the r' LF of main-sequence stars in NGC 7790 is matched to r' = 20 by a model that is based on the solar neighborhood mass function. The structural properties of all three clusters are investigated by examining the two-point angular correlation function of blue main-sequence stars. King 12 and NGC 7788 are each surrounded by a stellar halo that extends out to a radius of 5 arcmin ({approx}3.4 pc). It is suggested that these halos form in response to large-scale mass ejection early in the evolution of the clusters, as predicted by models. In contrast, blue main-sequence stars in NGC 7790 are traced out to a radius of {approx}7.5 arcmin ({approx}5.5 pc), with no evidence of a halo. It is suggested that all three clusters may have originated in the same star-forming complex, but not in the same giant molecular cloud.« less

The ToxBank Data Warehouse: Supporting the Replacement of In Vivo Repeated Dose Systemic Toxicity Testing.

PubMed

Kohonen, Pekka; Benfenati, Emilio; Bower, David; Ceder, Rebecca; Crump, Michael; Cross, Kevin; Grafström, Roland C; Healy, Lyn; Helma, Christoph; Jeliazkova, Nina; Jeliazkov, Vedrin; Maggioni, Silvia; Miller, Scott; Myatt, Glenn; Rautenberg, Michael; Stacey, Glyn; Willighagen, Egon; Wiseman, Jeff; Hardy, Barry

2013-01-01

The aim of the SEURAT-1 (Safety Evaluation Ultimately Replacing Animal Testing-1) research cluster, comprised of seven EU FP7 Health projects co-financed by Cosmetics Europe, is to generate a proof-of-concept to show how the latest technologies, systems toxicology and toxicogenomics can be combined to deliver a test replacement for repeated dose systemic toxicity testing on animals. The SEURAT-1 strategy is to adopt a mode-of-action framework to describe repeated dose toxicity, combining in vitro and in silico methods to derive predictions of in vivo toxicity responses. ToxBank is the cross-cluster infrastructure project whose activities include the development of a data warehouse to provide a web-accessible shared repository of research data and protocols, a physical compounds repository, reference or "gold compounds" for use across the cluster (available via wiki.toxbank.net), and a reference resource for biomaterials. Core technologies used in the data warehouse include the ISA-Tab universal data exchange format, REpresentational State Transfer (REST) web services, the W3C Resource Description Framework (RDF) and the OpenTox standards. We describe the design of the data warehouse based on cluster requirements, the implementation based on open standards, and finally the underlying concepts and initial results of a data analysis utilizing public data related to the gold compounds. Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

An open-source software package for multivariate modeling and clustering: applications to air quality management.

PubMed

Wang, Xiuquan; Huang, Guohe; Zhao, Shan; Guo, Junhong

2015-09-01

This paper presents an open-source software package, rSCA, which is developed based upon a stepwise cluster analysis method and serves as a statistical tool for modeling the relationships between multiple dependent and independent variables. The rSCA package is efficient in dealing with both continuous and discrete variables, as well as nonlinear relationships between the variables. It divides the sample sets of dependent variables into different subsets (or subclusters) through a series of cutting and merging operations based upon the theory of multivariate analysis of variance (MANOVA). The modeling results are given by a cluster tree, which includes both intermediate and leaf subclusters as well as the flow paths from the root of the tree to each leaf subcluster specified by a series of cutting and merging actions. The rSCA package is a handy and easy-to-use tool and is freely available at http://cran.r-project.org/package=rSCA . By applying the developed package to air quality management in an urban environment, we demonstrate its effectiveness in dealing with the complicated relationships among multiple variables in real-world problems.

Multicolor CCD Photometry of the Open Cluster IC361

DTIC Science & Technology

2010-01-01

journal Volume 19 Numbers 1/2 2010 Contents V. Straizys, A. Kazlauskas. Young stars in the Camelopardalis dust and molecular clouds. VI. YSOs...Vilnius + I system for 7250 stars down to 1= 19.6 mag has been obtained in the 20’ x 26’ field of the open cluster IC 361 in Camelopardalis . The catalog...1= 19.6 mag has been obtained in the 20’ x 26’ field of the open cluster IC 361 in Camelopardalis . The catalog of 1420 stars down to V ~ 18.5 mag

A Survey of Open Clusters in the u'g'r'i'z' Filter System. 3. Results for the Cluster NGC 188

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fornal, Bartosz; Tucker, Douglas L.; Smith, J.Allyn

2006-11-01

The authors continue the series of papers describing the results of a photometric survey of open star clusters, primarily in the southern hemisphere, taken in the u'g'r'i'z' filter system. The entire observed sample covered more than 100 clusters, but here they present data only on NGC 188, which is one of the oldest open clusters known in the Milky Way. They fit the Padova theoretical isochrones to the data. Assuming a solar metallicity for NGC 188, they find a distance of 1700 {+-} 100 pc, an age of 7.5 {+-} 0.7 Gyr, and a reddening E(B-V) of 0.025 {+-} 0.005.more » This yields a distance modulus of 11.23 {+-} 0.14.« less

Hierarchical cluster analysis of progression patterns in open-angle glaucoma patients with medical treatment.

PubMed

Bae, Hyoung Won; Rho, Seungsoo; Lee, Hye Sun; Lee, Naeun; Hong, Samin; Seong, Gong Je; Sung, Kyung Rim; Kim, Chan Yun

2014-04-29

To classify medically treated open-angle glaucoma (OAG) by the pattern of progression using hierarchical cluster analysis, and to determine OAG progression characteristics by comparing clusters. Ninety-five eyes of 95 OAG patients who received medical treatment, and who had undergone visual field (VF) testing at least once per year for 5 or more years. OAG was classified into subgroups using hierarchical cluster analysis based on the following five variables: baseline mean deviation (MD), baseline visual field index (VFI), MD slope, VFI slope, and Glaucoma Progression Analysis (GPA) printout. After that, other parameters were compared between clusters. Two clusters were made after a hierarchical cluster analysis. Cluster 1 showed -4.06 ± 2.43 dB baseline MD, 92.58% ± 6.27% baseline VFI, -0.28 ± 0.38 dB per year MD slope, -0.52% ± 0.81% per year VFI slope, and all "no progression" cases in GPA printout, whereas cluster 2 showed -8.68 ± 3.81 baseline MD, 77.54 ± 12.98 baseline VFI, -0.72 ± 0.55 MD slope, -2.22 ± 1.89 VFI slope, and seven "possible" and four "likely" progression cases in GPA printout. There were no significant differences in age, sex, mean IOP, central corneal thickness, and axial length between clusters. However, cluster 2 included more high-tension glaucoma patients and used a greater number of antiglaucoma eye drops significantly compared with cluster 1. Hierarchical cluster analysis of progression patterns divided OAG into slow and fast progression groups, evidenced by assessing the parameters of glaucomatous progression in VF testing. In the fast progression group, the prevalence of high-tension glaucoma was greater and the number of antiglaucoma medications administered was increased versus the slow progression group. Copyright 2014 The Association for Research in Vision and Ophthalmology, Inc.

Dual emissions from MnS clusters confined in the sodalite nanocage of a chalcogenide-based semiconductor zeolite.

PubMed

Hu, Dandan; Zhang, Yingying; Lin, Jian; Hou, Yike; Li, Dongsheng; Wu, Tao

2017-03-21

A new host-guest hybrid system with MnS clusters confined in a chalcogenide-based semiconductor zeolite was for the first time constructed and its photoluminescence (PL) properties were also investigated. The existence of MnS clusters in the nanopores of the semiconductor zeolite was revealed by UV-Vis absorption spectroscopy, steady-state fluorescence analysis, Raman as well as Fourier transform infrared (FTIR) spectroscopy. The aggregation state of the entrapped MnS clusters at different measurement temperatures was probed by electron paramagnetic resonance (EPR) spectroscopy. Of significant importance is the fact that the entrapped MnS clusters displayed dual emissions at 518 nm (2.39 eV) and 746 nm (1.66 eV), respectively, and the long-wavelength emission has never been observed in other MnS-confined host-guest systems. These two emission peaks displayed tunable PL intensity affected by the loading level and measurement temperature. This can be explained by the different morphologies of MnS clusters with different aggregation states at the corresponding loading level or measurement temperature. The current study opens a new avenue to construct inorganic chalcogenide cluster involved host-guest systems with a semiconductor zeolite as the host matrix.

Protein sequences clustering of herpes virus by using Tribe Markov clustering (Tribe-MCL)

NASA Astrophysics Data System (ADS)

Bustamam, A.; Siswantining, T.; Febriyani, N. L.; Novitasari, I. D.; Cahyaningrum, R. D.

2017-07-01

The herpes virus can be found anywhere and one of the important characteristics is its ability to cause acute and chronic infection at certain times so as a result of the infection allows severe complications occurred. The herpes virus is composed of DNA containing protein and wrapped by glycoproteins. In this work, the Herpes viruses family is classified and analyzed by clustering their protein-sequence using Tribe Markov Clustering (Tribe-MCL) algorithm. Tribe-MCL is an efficient clustering method based on the theory of Markov chains, to classify protein families from protein sequences using pre-computed sequence similarity information. We implement the Tribe-MCL algorithm using an open source program of R. We select 24 protein sequences of Herpes virus obtained from NCBI database. The dataset consists of three types of glycoprotein B, F, and H. Each type has eight herpes virus that infected humans. Based on our simulation using different inflation factor r=1.5, 2, 3 we find a various number of the clusters results. The greater the inflation factor the greater the number of their clusters. Each protein will grouped together in the same type of protein.

Solid state, thermal synthesis of site-specific protein-boron cluster conjugates and their physicochemical and biochemical properties.

PubMed

Goszczyński, Tomasz M; Kowalski, Konrad; Leśnikowski, Zbigniew J; Boratyński, Janusz

2015-02-01

Boron clusters represent a vast family of boron-rich compounds with extraordinary properties that provide the opportunity of exploitation in different areas of chemistry and biology. In addition, boron clusters are clinically used in boron neutron capture therapy (BNCT) of tumors. In this paper, a novel, in solid state (solvent free), thermal method for protein modification with boron clusters has been proposed. The method is based on a cyclic ether ring opening in oxonium adduct of cyclic ether and a boron cluster with nucleophilic centers of the protein. Lysozyme was used as the model protein, and the physicochemical and biological properties of the obtained conjugates were characterized. The main residues of modification were identified as arginine-128 and threonine-51. No significant changes in the secondary or tertiary structures of the protein after tethering of the boron cluster were found using mass spectrometry and circular dichroism measurements. However, some changes in the intermolecular interactions and hydrodynamic and catalytic properties were observed. To the best of our knowledge, we have described the first example of an application of cyclic ether ring opening in the oxonium adducts of a boron cluster for protein modification. In addition, a distinctive feature of the proposed approach is performing the reaction in solid state and at elevated temperature. The proposed methodology provides a new route to protein modification with boron clusters and extends the range of innovative molecules available for biological and medical testing. Copyright © 2014 Elsevier B.V. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martinez-Medina, L. A.; Pichardo, B.; Moreno, E.

We present a dynamical study of the effect of the bar and spiral arms on the simulated orbits of open clusters in the Galaxy. Specifically, this work is devoted to the puzzling presence of high-altitude open clusters in the Galaxy. For this purpose we employ a very detailed observationally motivated potential model for the Milky Way and a careful set of initial conditions representing the newly born open clusters in the thin disk. We find that the spiral arms are able to raise an important percentage of open clusters (about one-sixth of the total employed in our simulations, depending onmore » the structural parameters of the arms) above the Galactic plane to heights beyond 200 pc, producing a bulge-shaped structure toward the center of the Galaxy. Contrary to what was expected, the spiral arms produce a much greater vertical effect on the clusters than the bar, both in quantity and height; this is due to the sharper concentration of the mass on the spiral arms, when compared to the bar. When a bar and spiral arms are included, spiral arms are still capable of raising an important percentage of the simulated open clusters through chaotic diffusion (as tested from classification analysis of the resultant high-z orbits), but the bar seems to restrain them, diminishing the elevation above the plane by a factor of about two.« less

Integrated spectral properties of 22 small angular diameter galactic open clusters

NASA Astrophysics Data System (ADS)

Ahumada, A. V.; Clariá, J. J.; Bica, E.

2007-10-01

Aims:Flux-calibrated integrated spectra of a sample of 22 Galactic open clusters of small angular diameter are presented. With one exception (ESO 429-SC2), all objects have Galactic longitudes in the range 208° < l < 33°. The spectra cover the range ≈3600-6800 Å, with a resolution of ≈14 Å. The properties of the present cluster sample are compared with those of well-studied clusters located in two 90° sectors, centred at l = 257° and l = 347°. The dissolution rate of Galactic open clusters in these two sectors is examined. Methods: Using the equivalent widths of the Balmer lines and comparing line intensities and continuum distribution of the cluster spectra with those of template cluster spectra with known properties, we derive both foreground reddening values and ages. Thus, we provide information independent of that determined through colour-magnitude diagrams. Results: The derived E(B-V) values for the whole sample vary from 0.0 in ESO 445-SC74 to 1.90 in Pismis 24, while the ages range from ~3 Myr (NGC 6604 and BH 151) to ~3.5 Gyr (Ruprecht 2). For six clusters (Dolidze 34, ESO 429-SC2, ESO 445-SC74, Ruprecht 2, BH 151 and Hogg 9) the foreground E(B-V) colour excesses and ages are determined for the first time. The results obtained for the remaining clusters show, in general terms, good agreement with previous photometric results. Conclusions: The age and reddening distributions of the present sample match those of known clusters in the two selected Galactic sectors. The present results would favour a major dissolution rate of star clusters in these two sectors. Two new solar-metallicity templates are defined corresponding to the age groups of (4-5) Myr and 30 Myr among those of Piatti et al. (2002, MNRAS, 335, 233). The Piatti et al. templates of 20 Myr and (3-4) Gyr are here redefined. Based on observations made at Complejo Astronómico El Leoncito, which is operated under agreement between the Consejo Nacional de Investigaciones Científicas y Técnicas de la República Argentina (CONICET) and the National Universities of La Plata, Córdoba and San Juan, Argentina. Tables [see full text]- [see full text] and Appendix are only available in electronic form at http://www.aanda.org

Perceptual mapping of chemesthetic stimuli in naïve assessors

PubMed Central

Byrnes, Nadia; Nestrud, Michael A.; Hayes, John E.

2015-01-01

Chemesthetic compounds, responsible for sensations such as burning, cooling, and astringency, are difficult stimuli to work with, especially when the evaluation task requires retasting. Here, we developed a protocol by which chemesthetic compounds can be assessed using sorting. We compared the performance of two cohorts of untrained assessors on this task, one with nose clips and the other without. Similarity matrices were analyzed using multidimensional scaling (MDS) to produce perceptual maps for the two cohorts. Overall, the groupings from the nose open cohort tended to follow a biological basis, consistent with previous findings that suggest compounds that activate a common receptor will elicit similar sensations. The nose-open and nose-pinched cohorts generated significantly different maps. The nose-pinched cohort had a higher variance in the MDS solution than the nose-open group. While the nose-open cohort generated seven clusters, the nose-pinched cohort generated only two clusters, seemingly based on the ready identification of chemesthetic sensations or not. There was less consensus regarding the attributes used to describe the samples in the nose-pinched cohort than in the nose-open cohort as well, as this cohort collectively generated more attributes but fewer were significant in regression. PMID:26236421

Age and Mass for 920 Large Magellanic Cloud Clusters Derived from 100 Million Monte Carlo Simulations

NASA Astrophysics Data System (ADS)

Popescu, Bogdan; Hanson, M. M.; Elmegreen, Bruce G.

2012-06-01

We present new age and mass estimates for 920 stellar clusters in the Large Magellanic Cloud (LMC) based on previously published broadband photometry and the stellar cluster analysis package, MASSCLEANage. Expressed in the generic fitting formula, d 2 N/dMdtvpropM α t β, the distribution of observed clusters is described by α = -1.5 to -1.6 and β = -2.1 to -2.2. For 288 of these clusters, ages have recently been determined based on stellar photometric color-magnitude diagrams, allowing us to gauge the confidence of our ages. The results look very promising, opening up the possibility that this sample of 920 clusters, with reliable and consistent age, mass, and photometric measures, might be used to constrain important characteristics about the stellar cluster population in the LMC. We also investigate a traditional age determination method that uses a χ2 minimization routine to fit observed cluster colors to standard infinite-mass limit simple stellar population models. This reveals serious defects in the derived cluster age distribution using this method. The traditional χ2 minimization method, due to the variation of U, B, V, R colors, will always produce an overdensity of younger and older clusters, with an underdensity of clusters in the log (age/yr) = [7.0, 7.5] range. Finally, we present a unique simulation aimed at illustrating and constraining the fading limit in observed cluster distributions that includes the complex effects of stochastic variations in the observed properties of stellar clusters.

CCD photometry of Andromeda IV - Dwarf irregular galaxy or M31 open cluster?

NASA Technical Reports Server (NTRS)

Jones, Joseph H.

1993-01-01

CCD photometry of Andromeda IV was obtained during discretionary time in August of 1989 at the Canada-France-Hawaii Telescope on Mauna Kea and the data were reduced at CFHT during the summer of 1991. And IV has been catalogued both as a dwarf galaxy and as an open star cluster in M31. The color-magnitude diagrams presented indicate that this object has a young population of stars with a narrow age range, consistent with the characteristics of an open star cluster or stellar association. A radial velocity measurement taken from the literature and analyzed with respect to the rotation curve of M31 indicates this object resides in the disk of the Andromeda Galaxy, strengthening the conclusion that it is indeed a very large open star cluster or a densely populated stellar association rather than a dwarf irregular galaxy.

Ab initio Bogoliubov coupled cluster theory for open-shell nuclei

DOE PAGES

Signoracci, Angelo J.; Duguet, Thomas; Hagen, Gaute; ...

2015-06-29

Background: Ab initio many-body methods have been developed over the past 10 yr to address closed-shell nuclei up to mass A≈130 on the basis of realistic two- and three-nucleon interactions. A current frontier relates to the extension of those many-body methods to the description of open-shell nuclei. Several routes to address open-shell nuclei are currently under investigation, including ideas that exploit spontaneous symmetry breaking. Purpose: Singly open-shell nuclei can be efficiently described via the sole breaking of U(1) gauge symmetry associated with particle-number conservation as a way to account for their superfluid character. While this route was recently followed withinmore » the framework of self-consistent Green's function theory, the goal of the present work is to formulate a similar extension within the framework of coupled cluster theory. Methods: We formulate and apply Bogoliubov coupled cluster (BCC) theory, which consists of representing the exact ground-state wave function of the system as the exponential of a quasiparticle excitation cluster operator acting on a Bogoliubov reference state. Equations for the ground-state energy and the cluster amplitudes are derived at the singles and doubles level (BCCSD) both algebraically and diagrammatically. The formalism includes three-nucleon forces at the normal-ordered two-body level. The first BCC code is implemented in m scheme, which will permit the treatment of doubly open-shell nuclei via the further breaking of SU(2) symmetry associated with angular momentum conservation. Results: Proof-of-principle calculations in an N max=6 spherical harmonic oscillator basis for 16,18O and 18Ne in the BCCD approximation are in good agreement with standard coupled cluster results with the same chiral two-nucleon interaction, while 20O and 20Mg display underbinding relative to experiment. The breaking of U(1) symmetry, monitored by computing the variance associated with the particle-number operator, is relatively constant for all five nuclei, in both the Hartree-Fock-Bogoliubov and BCCD approximations. Conclusions: The newly developed many-body formalism increases the potential span of ab initio calculations based on single-reference coupled cluster techniques tremendously, i.e., potentially to reach several hundred additional midmass nuclei. The new formalism offers a wealth of potential applications and further extensions dedicated to the description of ground and excited states of open-shell nuclei. Short-term goals include the implementation of three-nucleon forces at the normal-ordered two-body level. Midterm extensions include the approximate treatment of triples corrections and the development of the equation-of-motion methodology to treat both excited states and odd nuclei. Long-term extensions include exact restoration of U(1) and SU(2) symmetries.« less

The open cluster IC 4665

NASA Technical Reports Server (NTRS)

Prosser, Charles F.

1993-01-01

The results of a combined astrometric, photometric, and spectroscopic program to identify members of the open cluster IC 4665 are presented. Numerous new proper motion/photometric candidate members and at least 23 M dwarfs with H-alpha emission have been identified. A reanalysis of IC 4665 age using different methods yields conflicting results ranging from about 3 X 10 exp 7 yr to the age of the Pleiades. This study provides a list of candidate cluster members in the intermediate and low-mass regime of this cluster. Future spectroscopic observations of these candidates should eventually identify true cluster members.

HPC enabled real-time remote processing of laparoscopic surgery

NASA Astrophysics Data System (ADS)

Ronaghi, Zahra; Sapra, Karan; Izard, Ryan; Duffy, Edward; Smith, Melissa C.; Wang, Kuang-Ching; Kwartowitz, David M.

2016-03-01

Laparoscopic surgery is a minimally invasive surgical technique. The benefit of small incisions has a disadvantage of limited visualization of subsurface tissues. Image-guided surgery (IGS) uses pre-operative and intra-operative images to map subsurface structures. One particular laparoscopic system is the daVinci-si robotic surgical system. The video streams generate approximately 360 megabytes of data per second. Real-time processing this large stream of data on a bedside PC, single or dual node setup, has become challenging and a high-performance computing (HPC) environment may not always be available at the point of care. To process this data on remote HPC clusters at the typical 30 frames per second rate, it is required that each 11.9 MB video frame be processed by a server and returned within 1/30th of a second. We have implement and compared performance of compression, segmentation and registration algorithms on Clemson's Palmetto supercomputer using dual NVIDIA K40 GPUs per node. Our computing framework will also enable reliability using replication of computation. We will securely transfer the files to remote HPC clusters utilizing an OpenFlow-based network service, Steroid OpenFlow Service (SOS) that can increase performance of large data transfers over long-distance and high bandwidth networks. As a result, utilizing high-speed OpenFlow- based network to access computing clusters with GPUs will improve surgical procedures by providing real-time medical image processing and laparoscopic data.

Searching for the birthplaces of open clusters with ages of several billion years

NASA Astrophysics Data System (ADS)

Acharova, I. A.; Shevtsova, E. S.

2016-01-01

We discuss the possibility of finding the birthplaces of open clusters (OC) with ages of several billion years. The proposed method is based on the comparison of the results of the chemical evolution modeling of the Galactic disk with the parameters of the cluster. Five OCs older than 7 Gyr are known: NGC6791, BH176, Collinder 261, Berkeley 17, and Berkeley 39. The oxygen and iron abundances in NGC6791 and the oxygen abundance in BH176 are twice the solar level, the heavy-element abundances in other clusters are close to the corresponding solar values. According to chemical evolution models, at the time of the formation of the objects considered the regions where the oxygen and iron abundances reached the corresponding levels extended out to 5 kpc from the Galactic center.At present time theOCs considered are located several kpc from the Galactic center. Some of these clusters are located extremely high, about 1 kpc above the disk midplane, i.e., they have been subject to some mechanism that has carried them into orbits uncharacteristic of this type of objects. It follows from a comparison with the results of chemical evolution that younger clusters with ages of 4-5 Gyr, e.g., NGC1193,M67, and others, may have formed in a broad range of Galactocentric distances. Their large heights above the disk midplane is sufficient to suggest that these clusters have moved away from their likely birthplaces. Clusters are carried far away from the Galactic disk until the present time: about 40 clusters with ages from 0 to 2 Gyr are observed at heights ranging from 300 to 750 pc.

Galactic Doppelgängers: The Chemical Similarity Among Field Stars and Among Stars with a Common Birth Origin

NASA Astrophysics Data System (ADS)

Ness, M.; Rix, H.-W.; Hogg, David W.; Casey, A. R.; Holtzman, J.; Fouesneau, M.; Zasowski, G.; Geisler, D.; Shetrone, M.; Minniti, D.; Frinchaboy, Peter M.; Roman-Lopes, Alexandre

2018-02-01

We explore to what extent stars within Galactic disk open clusters resemble each other in the high-dimensional space of their photospheric element abundances and contrast this with pairs of field stars. Our analysis is based on abundances for 20 elements, homogeneously derived from APOGEE spectra (with carefully quantified uncertainties of typically 0.03 dex). We consider 90 red giant stars in seven open clusters and find that most stars within a cluster have abundances in most elements that are indistinguishable (in a {χ }2-sense) from those of the other members, as expected for stellar birth siblings. An analogous analysis among pairs of > 1000 field stars shows that highly significant abundance differences in the 20 dimensional space can be established for the vast majority of these pairs, and that the APOGEE-based abundance measurements have high discriminating power. However, pairs of field stars whose abundances are indistinguishable even at 0.03 dex precision exist: ∼0.3% of all field star pairs and ∼1.0% of field star pairs at the same (solar) metallicity [Fe/H] = 0 ± 0.02. Most of these pairs are presumably not birth siblings from the same cluster, but rather doppelgängers. Our analysis implies that “chemical tagging” in the strict sense, identifying birth siblings for typical disk stars through their abundance similarity alone, will not work with such data. However, our approach shows that abundances have extremely valuable information for probabilistic chemo-orbital modeling, and combined with velocities, we have identified new cluster members from the field.

Study of II Galactic quadrant of Milky Way Galaxy using open clusters

NASA Astrophysics Data System (ADS)

Bisht, Devendra; Ganesh, Shashikiran; Baliyan, Kiran Singh; Yadav, Ramakant Singh; Durgapal, Alok

2018-04-01

We have made UBV I CCD observations for the open clusters Teutsch 1, Riddle 4 and Czernik 6 using 1.04-m Sampurnanand telescope located at the ARIES observatory (Manora peak, Nainital, India). We have used 2MASS JHKS data for the clusters Teutsch 126, Teutsch 54 and Czernik 3. For the estimation of fundamental parameters, we have plotted radial density profiles, colour-magnitude and colour-colour diagrams. Using these inputs, we have studied the structure of Milky Way Galaxy in the second Galactic quadrant. We have considered the open clusters that are younger than 1 Gyrs and lay in the longitude range from 90 to 180 deg. Our study shows that up to 3.5 Kpc, the Galactic disc bends towards the southern hemisphere while after 3.5 Kpc it bends towards the northern hemisphere. The distribution of reddening with longitude and age shows a decreasing trend with the longitude and age of the clusters. Our study also indicates that younger clusters have more reddening than older ones.

The Open Cluster Chemical Abundances and Mapping (OCCAM) Survey: Galactic Neutron Capture Abundance Gradients

NASA Astrophysics Data System (ADS)

O'Connell, Julia; Frinchaboy, Peter M.; Shetrone, Matthew D.; Melendez, Matthew; Cunha, Katia M. L.; Majewski, Steven R.; Zasowski, Gail; APOGEE Team

2017-01-01

The evolution of elements, as a function or age, throughout the Milky Way disk provides a key constraint for galaxy evolution models. In an effort to provide these constraints, we have conducted an investigation into the r- and s- process elemental abundances for a large sample of open clusters as part of an optical follow-up to the SDSS-III/APOGEE-1 survey. Stars were identified as cluster members by the Open Cluster Chemical Abundance & Mapping (OCCAM) survey, which culls member candidates by radial velocity, metallicity, and proper motion from the observed APOGEE sample. To obtain data for neutron capture elements in these clusters, we conducted a long-term observing campaign covering three years (2013-2016) using the McDonald Observatory Otto Struve 2.1-m telescope and Sandiford Cass Echelle Spectrograph (R ~ 60,000). We present Galactic neutron-capture abundance gradients using 30+ clusters, within 6 kpc of the Sun, covering a range of ages from ~80 Myr to ~10 Gyr .

The Open Cluster Chemical Abundances and Mapping (OCCAM) Survey: Galactic Neutron CaptureAbundance Gradients

NASA Astrophysics Data System (ADS)

O'Connell, Julia; Frinchaboy, Peter M.; Shetrone, Matthew D.; Melendez, Matthew; Cunha, Katia; Majewski, Steven R.; Zasowski, Gail; APOGEE Team

2017-06-01

The evolution of elements, as a function or age, throughout the Milky Way disk provides a key constraint for galaxy evolution models. In an effort to provide these constraints, we have conducted an investigation into the r- and s- process elemental abundances for a large sample of open clusters as part of an optical follow-up to the SDSS-III/APOGEE-1 survey. Stars were identified as cluster members by the Open Cluster Chemical Abundance & Mapping (OCCAM) survey, which culls member candidates by radial velocity, metallicity and proper motion from the observed APOGEE sample. To obtain data for neutron capture elements in these clusters, we conducted a long-term observing campaign covering three years (2013-2016) using the McDonald Observatory Otto Struve 2.1-m telescope and Sandiford Cass Echelle Spectrograph (R ~ 60,000). We present Galactic neutron capture abundance gradients using 30+ clusters, within 6 kpc of the Sun, covering a range of ages from ~80 Myr to ~10 Gyr .

Hybrid MPI+OpenMP Programming of an Overset CFD Solver and Performance Investigations

NASA Technical Reports Server (NTRS)

Djomehri, M. Jahed; Jin, Haoqiang H.; Biegel, Bryan (Technical Monitor)

2002-01-01

This report describes a two level parallelization of a Computational Fluid Dynamic (CFD) solver with multi-zone overset structured grids. The approach is based on a hybrid MPI+OpenMP programming model suitable for shared memory and clusters of shared memory machines. The performance investigations of the hybrid application on an SGI Origin2000 (O2K) machine is reported using medium and large scale test problems.

High-resolution spectroscopic observations of binary stars and yellow stragglers in three open clusters: NGC 2360, NGC 3680, and NGC 5822

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sales Silva, J. V.; Peña Suárez, V. J.; Katime Santrich, O. J.

2014-11-01

Binary stars in open clusters are very useful targets in constraining the nucleosynthesis process. The luminosities of the stars are known because the distances of the clusters are also known, so chemical peculiarities can be linked directly to the evolutionary status of a star. In addition, binary stars offer the opportunity to verify a relationship between them and the straggler population in both globular and open clusters. We carried out a detailed spectroscopic analysis to derive the atmospheric parameters for 16 red giants in binary systems and the chemical composition of 11 of them in the open clusters NGC 2360,more » NGC 3680, and NGC 5822. We obtained abundances of C, N, O, Na, Mg, Al, Ca, Si, Ti, Ni, Cr, Y, Zr, La, Ce, and Nd. The atmospheric parameters of the studied stars and their chemical abundances were determined using high-resolution optical spectroscopy. We employ the local thermodynamic equilibrium model atmospheres of Kurucz and the spectral analysis code MOOG. The abundances of the light elements were derived using the spectral synthesis technique. We found that the stars NGC 2360-92 and 96, NGC 3680-34, and NGC 5822-4 and 312 are yellow straggler stars. We show that the spectra of NGC 5822-4 and 312 present evidence of contamination by an A-type star as a secondary star. For the other yellow stragglers, evidence of contamination is given by the broad wings of the Hα. Detection of yellow straggler stars is important because the observed number can be compared with the number predicted by simulations of binary stellar evolution in open clusters. We also found that the other binary stars are not s-process enriched, which may suggest that in these binaries the secondary star is probably a faint main-sequence object. The lack of any s-process enrichment is very useful in setting constraints for the number of white dwarfs in the open cluster, a subject that is related to the birthrate of these kinds of stars in open clusters and also to the age of a cluster. Finally, rotational velocities were also determined and their values were compared with those already determined for field giant stars.« less

Method for discovering relationships in data by dynamic quantum clustering

DOEpatents

Weinstein, Marvin; Horn, David

2017-05-09

Data clustering is provided according to a dynamical framework based on quantum mechanical time evolution of states corresponding to data points. To expedite computations, we can approximate the time-dependent Hamiltonian formalism by a truncated calculation within a set of Gaussian wave-functions (coherent states) centered around the original points. This allows for analytic evaluation of the time evolution of all such states, opening up the possibility of exploration of relationships among data-points through observation of varying dynamical-distances among points and convergence of points into clusters. This formalism may be further supplemented by preprocessing, such as dimensional reduction through singular value decomposition and/or feature filtering.

Method for discovering relationships in data by dynamic quantum clustering

DOEpatents

Weinstein, Marvin; Horn, David

2014-10-28

Data clustering is provided according to a dynamical framework based on quantum mechanical time evolution of states corresponding to data points. To expedite computations, we can approximate the time-dependent Hamiltonian formalism by a truncated calculation within a set of Gaussian wave-functions (coherent states) centered around the original points. This allows for analytic evaluation of the time evolution of all such states, opening up the possibility of exploration of relationships among data-points through observation of varying dynamical-distances among points and convergence of points into clusters. This formalism may be further supplemented by preprocessing, such as dimensional reduction through singular value decomposition and/or feature filtering.

A method for determining the radius of an open cluster from stellar proper motions

NASA Astrophysics Data System (ADS)

Sánchez, Néstor; Alfaro, Emilio J.; López-Martínez, Fátima

2018-04-01

We propose a method for calculating the radius of an open cluster in an objective way from an astrometric catalogue containing, at least, positions and proper motions. It uses the minimum spanning tree in the proper motion space to discriminate cluster stars from field stars and it quantifies the strength of the cluster-field separation by means of a statistical parameter defined for the first time in this paper. This is done for a range of different sampling radii from where the cluster radius is obtained as the size at which the best cluster-field separation is achieved. The novelty of this strategy is that the cluster radius is obtained independently of how its stars are spatially distributed. We test the reliability and robustness of the method with both simulated and real data from a well-studied open cluster (NGC 188), and apply it to UCAC4 data for five other open clusters with different catalogued radius values. NGC 188, NGC 1647, NGC 6603, and Ruprecht 155 yielded unambiguous radius values of 15.2 ± 1.8, 29.4 ± 3.4, 4.2 ± 1.7, and 7.0 ± 0.3 arcmin, respectively. ASCC 19 and Collinder 471 showed more than one possible solution, but it is not possible to know whether this is due to the involved uncertainties or due to the presence of complex patterns in their proper motion distributions, something that could be inherent to the physical object or due to the way in which the catalogue was sampled.

Intrinsic Variability in Multiple Systems and Clusters: Open Questions

NASA Astrophysics Data System (ADS)

Lampens, P.

2006-04-01

It is most interesting and rewarding to probe the stellar structure of stars which belong to a system originating from the same parent cloud as this provides additional and more accurate constraints for the models. New results on pulsating components in multiple systems and clusters are beginning to emerge regularly. Based on concrete studies, I will present still unsolved problems and discuss some of the issues which may affect our understanding of the pulsation physics in such systems but also in general.

The First Photometric Analysis of the Open Clusters Dolidze 32 and 36

NASA Astrophysics Data System (ADS)

Amin, M. Y.; Elsanhory, W. H.; Haroon, A. A.

2018-06-01

We present a first study of two open clusters Dolidze 32 and Dolidze 36 in the near-infrared region JHKs with the aid of PPMXL catalog. In our study, we used a method able to separate open cluster stars from those that belong to the stellar background. Our results of calculations indicate that for both cluster Dolidze 32 and Dolidze 36 the number of probable member is 286 and 780, respectively. We have estimated the cluster center for Dolidze 32 and Dolidze 36 are α = 18h41m4s.188 , δ = -04°04'57''.144 , α = 20h02m29s.95 , δ = 42°05'49''.2 , respectively. The limiting radius for both clusters Dolidze 32 and Dolidze 36 is about 0.94 ± 0.03 pc and 0.81 ± 0.03 pc, respectively. The Color Magnitude Diagram allows us to estimate the reddening E(B - V) = 1.41 ± 0.03 mag. for Dolidze 32 and E(B - V) = 0.19 ± 0.04 mag. for Dolidze 36 in such a way that the distance modulus (m - M) is 11.36 ± 0.02 and 10.10 ± 0.03 for both clusters, respectively. On the other hand, the luminosity and mass functions of these two open clusters, Dolidze 32 and Dolidze 36, have been estimated, showing that the estimated masses are 437 ± 21 M⊙ and 678 ± 26 M⊙, respectively, while the mass function slopes are -2.56 ± 0.62 and -2.01 ± 0.70 for Dolidze 32 and Dolidze 36, respectively. Finally, the dynamical state of these two clusters shows that only Dolidze 36 can be considered as a dynamically relaxed cluster.

Primordial binary populations in low-density star clusters as seen by Chandra: globular clusters versus old open clusters

NASA Astrophysics Data System (ADS)

van den Berg, Maureen C.

2015-08-01

The binaries in the core of a star cluster are the energy source that prevents the cluster from experiencing core collapse. To model the dynamical evolution of a cluster, it is important to have constraints on the primordial binary content. X-ray observations of old star clusters are very efficient in detecting the close interacting binaries among the cluster members. The X-ray sources in star clusters are a mix of binaries that were dynamically formed and primordial binaries. In massive, dense star clusters, dynamical encounters play an important role in shaping the properties and numbers of the binaries. In contrast, in the low-density clusters the impact of dynamical encounters is presumed to be very small, and the close binaries detected in X-rays represent a primordial population. The lowest density globular clusters have current masses and central densities similar to those of the oldest open clusters in our Milky Way. I will discuss the results of studies with the Chandra X-ray Observatory that have nevertheless revealed a clear dichotomy: far fewer (if any at all) X-ray sources are detected in the central regions of the low-density globular clusters compared to the number of secure cluster members that have been detected in old open clusters (above a limiting X-ray luminosity of typically 4e30 erg/s). The low stellar encounter rates imply that dynamical destruction of binaries can be ignored at present, therefore an explanation must be sought elsewhere. I will discuss several factors that can shed light on the implied differences between the primordial close binary populations in the two types of star clusters.

Espectrofotometría en NGC 3255 y Hogg 17

NASA Astrophysics Data System (ADS)

Giorgi, E. E.; Solivella, G. R.; Vázquez, R. A.; Rizzo, L.

We present a spectrophotometric study of the open clusters NGC 3255 and Hogg 17, located in Carina and Centaurus respectively, based on new CCD UBVI photometry and spectral classification carried out in brightest stars in their fields. FULL TEXT IN SPANISH

A Photometric Search for Planets in the Open Cluster NGC 7086

NASA Astrophysics Data System (ADS)

Rosvick, Joanne M.; Robb, Russell

2006-12-01

In an attempt to discover short-period, Jupiter-mass planets orbiting solar-type stars in open clusters, we searched for planetary transits in the populous and relatively unstudied open cluster NGC 7086. A color-magnitude diagram constructed from new B and V photometry is presented, along with revised estimates of the cluster's color excess, distance modulus, and age. Several turnoff stars were observed spectroscopically in order to determine a color excess of E(B-V)=0.83+/-0.02. Empirically fitting the main sequences of two young open clusters and the semiempirical zero-age main sequence of Vandenberg and Poll yielded a distance modulus of (V-MV)=13.4+/-0.3 mag. This corresponds to a true distance modulus of (m-M)0=10.8 mag or a distance of 1.5 kpc to NGC 7086. These values were used with isochrones from the Padova group to obtain a cluster age of 100 Myr. Eleven nights of R-band photometry were used to search for planetary transits. Differential magnitudes were constructed for each star in the cluster. Light curves for each star were produced on a night-to-night basis and inspected for variability. No planetary transits were apparent; however, some interesting variable stars were discovered: a pulsating variable that appears to be a member of the γ Dor class and four possible eclipsing binary stars, one of which actually may be a multiple system.

Sejong Open Cluster Survey (SOS). 0. Target Selection and Data Analysis

NASA Astrophysics Data System (ADS)

Sung, Hwankyung; Lim, Beomdu; Bessell, Michael S.; Kim, Jinyoung S.; Hur, Hyeonoh; Chun, Moo-Young; Park, Byeong-Gon

2013-06-01

Star clusters are superb astrophysical laboratories containing cospatial and coeval samples of stars with similar chemical composition. We initiate the Sejong Open cluster Survey (SOS) - a project dedicated to providing homogeneous photometry of a large number of open clusters in the SAAO Johnson-Cousins' UBVI system. To achieve our main goal, we pay much attention to the observation of standard stars in order to reproduce the SAAO standard system. Many of our targets are relatively small sparse clusters that escaped previous observations. As clusters are considered building blocks of the Galactic disk, their physical properties such as the initial mass function, the pattern of mass segregation, etc. give valuable information on the formation and evolution of the Galactic disk. The spatial distribution of young open clusters will be used to revise the local spiral arm structure of the Galaxy. In addition, the homogeneous data can also be used to test stellar evolutionary theory, especially concerning rare massive stars. In this paper we present the target selection criteria, the observational strategy for accurate photometry, and the adopted calibrations for data analysis such as color-color relations, zero-age main sequence relations, Sp - M_V relations, Sp - T_{eff} relations, Sp - color relations, and T_{eff} - BC relations. Finally we provide some data analysis such as the determination of the reddening law, the membership selection criteria, and distance determination.

Open clusters. II. Fundamental parameters of B stars in Collinder 223, Hogg 16, NGC 2645, NGC 3114, and NGC 6025

NASA Astrophysics Data System (ADS)

Aidelman, Y.; Cidale, L. S.; Zorec, J.; Panei, J. A.

2015-05-01

Context. The knowledge of accurate values of effective temperature, surface gravity, and luminosity of stars in open clusters is very important not only to derive cluster distances and ages but also to discuss the stellar structure and evolution. Unfortunately, stellar parameters are still very scarce. Aims: Our goal is to study five open clusters to derive stellar parameters of the B and Be star population and discuss the cluster properties. In a near future, we intend to gather a statistically relevant samples of Be stars to discuss their origin and evolution. Methods: We use the Barbier-Chalonge-Divan spectrophotometric system, based on the study of low-resolution spectra around the Balmer discontinuity, since it is independent of the interstellar and circumstellar extinction and provides accurate Hertzsprung-Russell diagrams and stellar parameters. Results: We determine stellar fundamental parameters, such as effective temperatures, surface gravities, spectral types, luminosity classes, absolute and bolometric magnitudes and colour gradient excesses of the stars in the field of Collinder 223, Hogg 16, NGC 2645, NGC 3114, and NGC 6025. Additional information, mainly masses and ages of cluster stellar populations, is obtained using stellar evolution models. In most cases, stellar fundamental parameters have been derived for the first time. We also discuss the derived cluster properties of reddening, age and distance. Conclusions: Collinder 223 cluster parameters are overline{E(B-V) = 0.25 ± 0.03} mag and overline{(mv - M_v)0 = 11.21 ± 0.25} mag. In Hogg 16, we clearly distinguish two groups of stars (Hogg 16a and Hogg 16b) with very different mean true distance moduli (8.91 ± 0.26 mag and 12.51 ± 0.38 mag), mean colour excesses (0.26 ± 0.03 mag and 0.63 ± 0.08 mag), and spectral types (B early-type and B late-/A-type stars, respectively). The farthest group could be merged with Collinder 272. NGC 2645 is a young cluster (<14 Myr) with overline{E(B-V) = 0.58 ± 0.05} mag and overline{(mv - M_v)0 = 12.18 ± 0.30} mag. The cluster parameters of NGC 3114 are overline{E(B-V) = 0.10 ± 0.01} mag and overline{(mv - M_v)0 = 9.20 ± 0.15} mag. This cluster presents an important population of Be star, but it is difficult to define the cluster membership of stars because of the high contamination by field stars or the possible overlapping with a nearby cluster. Finally, we derive the following cluster parameters of NGC 6025: overline{E(B-V) = 0.34 ± 0.02} mag, overline{(mv - M_v)0 = 9.25 ± 0.17} mag, and an age between 40 Myr and 69 Myr. In all the cases, new Be candidate stars are reported based on the appearance of a second Balmer discontinuity. Observations taken at CASLEO, operating under agreement of CONICET and the Universities of La Plata, Córdoba and San Juan, Argentina.

Membership, binarity, and rotation of F-G-K stars in the open cluster Blanco 1

NASA Astrophysics Data System (ADS)

Mermilliod, J.-C.; Platais, I.; James, D. J.; Grenon, M.; Cargile, P. A.

2008-07-01

Context: The nearby open cluster Blanco 1 is of considerable astrophysical interest for formation and evolution studies of open clusters because it is the third highest Galactic latitude cluster known. It has been observed often, but so far no definitive and comprehensive membership determination is readily available. Aims: An observing programme was carried out to study the stellar population of Blanco 1, and especially the membership and binary frequency of the F5-K0 dwarfs. Methods: We obtained radial-velocities with the CORAVEL spectrograph in the field of Blanco 1 for a sample of 148 F-G-K candidate stars in the magnitude range 10 < V < 14. New proper motions and UBVI CCD photometric data from two extensive surveys were obtained independently and are used to establish reliable cluster membership assignments in concert with radial-velocity data. Results: The membership of 68 stars is confirmed on the basis of proper motion, radial velocity, and photometric criteria. Fourteen spectroscopic- and suspected binaries (2 SB2s, 9 SB1s, 3 SB?) have been discovered among the confirmed members. Thirteen additional stars are located above the main sequence or close to the binary ridge, with radial velocities and proper motions supporting their membership. These are probable binaries with wide separations. Nine binaries (7 SB1 and 2 SB2) were detected among the field stars. The spectroscopic binary frequency among members is 20% (14/68); however, the overall binary rate reaches 40% (27/68) if one includes the photometric binaries. The cluster mean heliocentric radial velocity is +5.53 ± 0.11 km s-1 based on the most reliable 49 members. The V sin i distribution is similar to that of the Pleiades, confirming the age similarities between the two clusters. Conclusions: This study clearly demonstrates that, in spite of the cluster's high Galactic latitude, three membership criteria - radial velocity, proper motion, and photometry - are necessary for performing a reliable membership selection. Furthermore, even with accurate and extensive data, ambiguous cases still remain. Based on observations collected with the Danish 1.54-m and the Swiss telescopes at the European Southern Observatory, La Silla, Chile, and with the old YALO 1-m telescope at the Cerro Tololo InterAmerican Observatory, Chile. Table [see full textsee full textsee full textsee full textsee full textsee full text] is also available in electronic form at the CDS via anonymous ftp to cdsarc.u-strasbg.fr (130.79.128.5) or via http://cdsweb.u-strasbg.fr/cgi-bin/qcat?J/A+A/485/95

Open source clustering software.

PubMed

de Hoon, M J L; Imoto, S; Nolan, J; Miyano, S

2004-06-12

We have implemented k-means clustering, hierarchical clustering and self-organizing maps in a single multipurpose open-source library of C routines, callable from other C and C++ programs. Using this library, we have created an improved version of Michael Eisen's well-known Cluster program for Windows, Mac OS X and Linux/Unix. In addition, we generated a Python and a Perl interface to the C Clustering Library, thereby combining the flexibility of a scripting language with the speed of C. The C Clustering Library and the corresponding Python C extension module Pycluster were released under the Python License, while the Perl module Algorithm::Cluster was released under the Artistic License. The GUI code Cluster 3.0 for Windows, Macintosh and Linux/Unix, as well as the corresponding command-line program, were released under the same license as the original Cluster code. The complete source code is available at http://bonsai.ims.u-tokyo.ac.jp/mdehoon/software/cluster. Alternatively, Algorithm::Cluster can be downloaded from CPAN, while Pycluster is also available as part of the Biopython distribution.

Commentary on interstellar matter associated with 18 open clusters

NASA Technical Reports Server (NTRS)

Leisawitz, David

1989-01-01

Information supplementary to that contained in Section 4 of an article entitled, A CO Survey of Regions Around 34 Open Clusters, (Leisawitz, Bash, and Thaddeus) published in the Astrophysical Journal Supplement Series, Volume 70, Number 4, August 1989 is summarized. The information presented here, which describes the interstellar environments of young clusters and some cluster physical characteristics, comes from observations published in the astronomical literature and the author's carbon monoxide (CO) emission line survey, and may help clarify our understanding of the interaction of massive stars with the interstellar medium.

A Search for Variable Stars in Ruprecht 134 (Abstract)

NASA Astrophysics Data System (ADS)

El Hamri, R.; Blake, M.

2018-06-01

(Abstract only) Contact binary stars have been found in many old open clusters. These stars are useful for obtaining the distances to these star clusters and for understanding the stellar populations and evolution of the old clusters. Ruprecht 134 is a relatively neglected, old open cluster with an age of about 1 Gyr. We have obtained observations of Ruprecht 134 using the 1-meter telescope at Cerro Tololo Interamerican Observatory for the purpose of identifying candidate contact binaries. We present the preliminary results of this search and discuss future observations.

Photometric Study of Intermediate Age Open Clusters

NASA Astrophysics Data System (ADS)

Contreras, Maria Eugenia; Michel, R.; Schuster, W.; Chavarria-Kleinhenn, C.; Olguin, L.

2011-05-01

We present the study of a sample of intermediate age open clusters (age 10-30 Myr) using optical (UBVRI) and infrared (JHK) photometric data. Optical photometry was obtained as part of the San Pedro Martir Open Clusters Project (SPM-OCP, Schuster et al. 2007; Michel et al. 2011, in preparation) while near-infrared photometry was retrieved from the 2MASS public data archive (ref). Most of the clusters included in SPM-OCP were selected from the Dias et al. (2002). catalog. On one hand, UVRI photometry was used to derive fundamental parameters of each cluster in the sample, such as age, distance and reddening. On the other hand, infrared photometry has allowed us to carry out a preliminary search of candidate stars to posses a circumstellar disk detected via its near-infrared excess. Observational data show that the number of infrared excess detection decreases with stellar age and actually this emission seems to completely disappear in stars with an age of 30 Myr (Strom et al. 1993; Muzerolle et al. 2000). One possible explanation for the lack of infrared emission has been proposed to be grain coagulation where small dust particles grow into larger and larger bodies until forming planetesimals and even planets. In this work we are aimed to analyze a sample of open clusters lying in this crucial age range.

Long-Period Planets in Open Clusters and the Evolution of Planetary Systems

NASA Astrophysics Data System (ADS)

Quinn, Samuel N.; White, Russel; Latham, David W.; Stefanik, Robert

2018-01-01

Recent discoveries of giant planets in open clusters confirm that they do form and migrate in relatively dense stellar groups, though overall occurrence rates are not yet well constrained because the small sample of giant planets discovered thus far predominantly have short periods. Moreover, planet formation rates and the architectures of planetary systems in clusters may vary significantly -- e.g., due to intercluster differences in the chemical properties that regulate the growth of planetary embryos or in the stellar space density and binary populations, which can influence the dynamical evolution of planetary systems. Constraints on the population of long-period Jovian planets -- those representing the reservoir from which many hot Jupiters likely form, and which are most vulnerable to intracluster dynamical interactions -- can help quantify how the birth environment affects formation and evolution, particularly through comparison of populations possessing a range of ages and chemical and dynamical properties. From our ongoing RV survey of open clusters, we present the discovery of several long-period planets and candidate substellar companions in the Praesepe, Coma Berenices, and Hyades open clusters. From these discoveries, we improve estimates of giant planet occurrence rates in clusters, and we note that high eccentricities in several of these systems support the prediction that the birth environment helps shape planetary system architectures.

CO2 Cluster Ion Beam, an Alternative Projectile for Secondary Ion Mass Spectrometry

NASA Astrophysics Data System (ADS)

Tian, Hua; Maciążek, Dawid; Postawa, Zbigniew; Garrison, Barbara J.; Winograd, Nicholas

2016-09-01

The emergence of argon-based gas cluster ion beams for SIMS experiments opens new possibilities for molecular depth profiling and 3D chemical imaging. These beams generally leave less surface chemical damage and yield mass spectra with reduced fragmentation compared with smaller cluster projectiles. For nanoscale bioimaging applications, however, limited sensitivity due to low ionization probability and technical challenges of beam focusing remain problematic. The use of gas cluster ion beams based upon systems other than argon offer an opportunity to resolve these difficulties. Here we report on the prospects of employing CO2 as a simple alternative to argon. Ionization efficiency, chemical damage, sputter rate, and beam focus are investigated on model compounds using a series of CO2 and Ar cluster projectiles (cluster size 1000-5000) with the same mass. The results show that the two projectiles are very similar in each of these aspects. Computer simulations comparing the impact of Ar2000 and (CO2)2000 on an organic target also confirm that the CO2 molecules in the cluster projectile remain intact, acting as a single particle of m/z 44. The imaging resolution employing CO2 cluster projectiles is improved by more than a factor of two. The advantage of CO2 versus Ar is also related to the increased stability which, in addition, facilitates the operation of the gas cluster ion beams (GCIB) system at lower backing pressure.

Preface

NASA Astrophysics Data System (ADS)

Landman, Uzi; Yannouleas, Constantine

2001-09-01

This special volume of The European Physical Journal D contains papers presented at the 10th International Symposium on Small Particles and Inorganic Clusters, ISSPIC 10, which was held from October 11th to 15th, 2000, in Atlanta, Georgia, USA. The meeting was attended by over 300 scientists from all over the world, and in it 45 invited and hot-topic lectures were given, and 330 posters were presented. In keeping with the tradition of the ISSPIC meetings, the 10th anniversary symposium was devoted to a broad and balanced overview of new results, emerging trends and perspectives pertaining to the physics and chemistry of clusters. The meeting covered experimental and theoretical investigations of gas-phase and supported clusters, nanoscale cluster-based materials, and nanometer. The sessions at ISSPIC 10 were organized as mini-symposia, and topics included: electronic and structural properties of clusters, charged clusters and photoelectron spectroscopy, fast laser spectroscopy and dynamics, cluster-surface interactions and cluster deposition, helium clusters and spectroscopy, structural evolution and thermodynamics of clusters, cluster reactivity and nano-catalysis, two-dimensional quantum dots, nano-crystals and self-assembly, mechanical, electronic and transport properties of carbon nanotubes, structure and conductance properties of nanowires, formation and stability of droplets and jets, and medical applications of colloidal clusters. Most importantly, the symposium provided an interdisciplinary forum for presentation and discussion of fundamental and methodological aspects as well as technologically oriented developments. The opening session of ISSPIC 10 was dedicated to the memory of Professor Walter D. Knight, a pioneer in the field of clusters. The work of Walter and his research group at Berkeley on electronic shells in metal clusters opened new avenues in cluster science and contributed significantly to the rapid growth of this field. We would like to take this opportunity to gratefully acknowledge the financial assistance extended to the symposium by the Georgia Institute of Technology and by the United States Air Force Office of Scientific Research. We also thank the participants for contributing to the success of ISSPIC 10 through communicating their latest scientific results during the meeting and via the papers appearing in these proceedings.

BOWS (bioinformatics open web services) to centralize bioinformatics tools in web services.

PubMed

Velloso, Henrique; Vialle, Ricardo A; Ortega, J Miguel

2015-06-02

Bioinformaticians face a range of difficulties to get locally-installed tools running and producing results; they would greatly benefit from a system that could centralize most of the tools, using an easy interface for input and output. Web services, due to their universal nature and widely known interface, constitute a very good option to achieve this goal. Bioinformatics open web services (BOWS) is a system based on generic web services produced to allow programmatic access to applications running on high-performance computing (HPC) clusters. BOWS intermediates the access to registered tools by providing front-end and back-end web services. Programmers can install applications in HPC clusters in any programming language and use the back-end service to check for new jobs and their parameters, and then to send the results to BOWS. Programs running in simple computers consume the BOWS front-end service to submit new processes and read results. BOWS compiles Java clients, which encapsulate the front-end web service requisitions, and automatically creates a web page that disposes the registered applications and clients. Bioinformatics open web services registered applications can be accessed from virtually any programming language through web services, or using standard java clients. The back-end can run in HPC clusters, allowing bioinformaticians to remotely run high-processing demand applications directly from their machines.

A comprehensive study of the rich open star cluster NGC 2099 based on deep BVI CCD observations

NASA Astrophysics Data System (ADS)

Nilakshi,; Sagar, R.

2002-01-01

The CCD observations of the rich open star cluster NGC 2099 and its surrounding field region have been carried out up to a limiting magnitude of V ~ 22 mag in B, V and I passbands for the first time. A total of ~ 12 000 stars have been observed in the area of about 24arcmin x 34arcmin in the cluster region, as well as ~ 2180 stars in the ~ 12arcmin x 12arcmin area of the field region located ~ 45arcmin away from the cluster center. The cluster parameters determined by fitting the convective core overshoot isochrones in the V, (B-V) and V, (V-I) diagrams are E(B-V) = 0.30+/-0.04 mag, distance = 1360+/- 100 pc, age = 400 Myr and metallicity Z = 0.008. A well-defined cluster main sequence spread over about 8 mag in range is observed for the first time. Its intrinsic spread amounting to ~ 0.06 mag in colour is almost the same over the entire brightness and can be understood in terms of the presence of physical/optical binaries. The core and cluster radii determined from the radial stellar density profiles are 185 arcsec and 1000 arcsec respectively. Only about 22% of cluster members are present in the core region. The effects of mass segregation, most probably due to dynamical evolution, have been observed in the cluster. The mass function slope of the entire cluster is ~ -0.67+/-0.12. It becomes closer to the Salpeter value of -1.35, if flattening in the cluster mass function due to presence of both binaries and a much more extended corona is considered. Full Table 4 is only available in electronic form at the CDS via anonymous ftp to cdsarc.u-strasbg.fr (130.79.128.5) or via http://cdsweb.u-strasbg.fr/cgi-bin/qcat?J/A+A/381/65

The Magellanic Bridge Cluster NGC 796: Deep Optical AO Imaging Reveals the Stellar Content and Initial Mass Function of a Massive Open Cluster

NASA Astrophysics Data System (ADS)

Kalari, Venu M.; Carraro, Giovanni; Evans, Christopher J.; Rubio, Monica

2018-04-01

NGC 796 is a massive young cluster located 59 kpc from us in the diffuse intergalactic medium of the 1/5–1/10 Z⊙ Magellanic Bridge, allowing us to probe variations in star formation and stellar evolution processes as a function of metallicity in a resolved fashion, and providing a link between resolved studies of nearby solar-metallicity and unresolved distant metal-poor clusters located in high-redshift galaxies. In this paper, we present adaptive optics griHα imaging of NGC 796 (at 0.″5, which is ∼0.14 pc at the cluster distance) along with optical spectroscopy of two bright members to quantify the cluster properties. Our aim is to explore whether star formation and stellar evolution vary as a function of metallicity by comparing the properties of NGC 796 to higher-metallicity clusters. We find an age of {20}-5+12 Myr from isochronal fitting of the cluster main sequence in the color–magnitude diagram. Based on the cluster luminosity function, we derive a top-heavy stellar initial mass function (IMF) with a slope α = 1.99 ± 0.2, hinting at a metallicity and/or environmental dependence of the IMF, which may lead to a top-heavy IMF in the early universe. Study of the Hα emission-line stars reveals that classical Be stars constitute a higher fraction of the total B-type stars when compared with similar clusters at greater metallicity, providing some support to the chemically homogeneous theory of stellar evolution. Overall, NGC 796 has a total estimated mass of 990 ± 200 M⊙, and a core radius of 1.4 ± 0.3 pc, which classifies it as a massive young open cluster, unique in the diffuse interstellar medium of the Magellanic Bridge.

Open Mess Management Career Ladder AFS 742X0 and CEM Code 74200.

DTIC Science & Technology

1980-12-01

I. OPEN MESS MANAGERS (SPC049, N=187) 11. FOOD / BEVERAGE OPERATIONS ASSISTANI MANAGERS ’LUSTER (GRP076, N=92) a. Bar and Operations Managers (GKP085...said they will or probably will reenlist. 1I. FOOD / BEVERAGE OPERATIONS ASSISTANT MANAGERS CLUSTER (GRP076).- This cluster of 9-2 reslpo nrts-(23...operation of open mess food and beverage functions. The majority of these airmen identify themselves as Assistant Managers of open mess facilities and are

A CCD-based search for very low mass members of the Pleiades cluster

NASA Technical Reports Server (NTRS)

Stauffer, John R.; Hamilton, Donald; Probst, Ronald G.

1994-01-01

We have obtained deep charge coupled device (CCD)V and I images of a number of fields near the center of the Pleiades open cluster. We have also obtained imaging data for Praesepe, a very similar cluster in terms of distance and richness but nearly 10 times older than the Pleiades. Because brown dwarfs are predicted to become much fainter and cooler between Pleiades and Praesepe ages, this provides a powerful differential technique for placing constraints on the brown dwarf population in open clusters. Combined with our previously reported observations, we now have data for about 0.4 sq deg in the Pleiades, corresponding roughly to 5% of the area of that cluster. We have searched the new CCD frames for additional Pleiades brown dwarf candidates. Two possible candidates are present, the faintest of which has V approximately equal to 22.5, (V-I)(sub K) approximately equal to 4.6. Because we do not have proper motion data and the colors of these objects are not redder than the reddest known field stars, it is possible that some or all of our candidates are somewhat higher mass field stars rather than Pleiades-age brown dwarfs. Even if all six of the proposed brown dwarf candidates in our 0.4 sq deg field are Pleiades members, the relatively small number found suggests that low mass stars or brown dwarfs do not contribute significantly to the total mass of the cluster.

The SEGUE Stellar Parameter Pipeline. II. Validation with Galactic Globular and Open Clusters

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lee, Y.S.; Beers, T.C.; Sivarani, T.

2007-10-01

The authors validate the performance and accuracy of the current SEGUE (Sloan Extension for Galactic Understanding and Exploration) Stellar Parameter Pipeline (SSPP), which determines stellar atmospheric parameters (effective temperature, surface gravity, and metallicity) by comparing derived overall metallicities and radial velocities from selected likely members of three globular clusters (M 13, M 15, and M 2) and two open clusters (NGC 2420 and M 67) to the literature values. Spectroscopic and photometric data obtained during the course of the original Sloan Digital Sky Survey (SDSS-1) and its first extension (SDSS-II/SEGUE) are used to determine stellar radial velocities and atmospheric parametermore » estimates for stars in these clusters. Based on the scatter in the metallicities derived for the members of each cluster, they quantify the typical uncertainty of the SSPP values, {sigma}([Fe/H]) = 0.13 dex for stars in the range of 4500 K {le} T{sub eff} {le} 7500 K and 2.0 {le} log g {le} 5.0, at least over the metallicity interval spanned by the clusters studied (-2.3 {le} [Fe/H] < 0). The surface gravities and effective temperatures derived by the SSPP are also compared with those estimated from the comparison of the color-magnitude diagrams with stellar evolution models; they find satisfactory agreement. At present, the SSPP underestimates [Fe/H] for near-solar-metallicity stars, represented by members of M 67 in this study, by {approx} 0.3 dex.« less

THE YOUNG OPEN CLUSTER BERKELEY 55

DOE Office of Scientific and Technical Information (OSTI.GOV)

Negueruela, Ignacio; Marco, Amparo, E-mail: ignacio.negueruela@ua.es, E-mail: amparo.marco@ua.es

We present UBV photometry of the highly reddened and poorly studied open cluster Berkeley 55, revealing an important population of B-type stars and several evolved stars of high luminosity. Intermediate-resolution far-red spectra of several candidate members confirm the presence of one F-type supergiant and six late supergiants or bright giants. The brightest blue stars are mid-B giants. Spectroscopic and photometric analyses indicate an age 50 {+-} 10 Myr. The cluster is located at a distance d Almost-Equal-To 4 kpc, consistent with other tracers of the Perseus Arm in this direction. Berkeley 55 is thus a moderately young open cluster withmore » a sizable population of candidate red (super)giant members, which can provide valuable information about the evolution of intermediate-mass stars.« less

Wide-Field CCD Photometry around Nine Open Clusters

NASA Astrophysics Data System (ADS)

Sharma, Saurabh; Pandey, A. K.; Ogura, K.; Mito, H.; Tarusawa, K.; Sagar, R.

2006-10-01

In this paper we study the evolution of the core and corona of nine open clusters using the projected radial density profiles derived from homogeneous CCD photometric data obtained with the 105 cm Kiso Schmidt telescope. The age and galactocentric distance of the target clusters vary from 16 to 2000 Myr and 9 to 10.8 kpc, respectively. Barring Be 62, which is a young open cluster, other clusters show a uniform reddening across the cluster region. The reddening in Be 62 varies from E(B-V)min=0.70 mag to E(B-V)max=1.00 mag. The coronae of six of the clusters in the present sample are found to be elongated; however, on the basis of the present sample it is not possible to establish any correlation between the age and shape of the core. The elongated core in the case of the young cluster Be 62 may reflect the initial conditions in the parental molecular cloud. The other results of the present study are as follows: (1) Core radius rc and corona size rcn/cluster radius rcl are linearly correlated. (2) The rc, rcn, and rcl are linearly correlated with the number of stars in that region. (3) In the age range 10-1000 Myr, the core and corona shrink with age. (4) We find that in the galactocentric distance range 9-10 kpc, the core and corona/cluster extent of the clusters increase with the galactocentric distance.

Red giants and yellow stragglers in the young open cluster NGC 2447

NASA Astrophysics Data System (ADS)

da Silveira, M. D.; Pereira, C. B.; Drake, N. A.

2018-06-01

In this work we analysed, using high-resolution spectroscopy, a sample of 12 single and 4 spectroscopic binary stars of the open cluster NGC 2447. For the single stars, we obtained atmospheric parameters and chemical abundances of Li, C, N, O, Na, Mg, Al, Ca, Si, Ti, Ni, Cr, Y, Zr, La, Ce, Nd, Eu. Rotational velocities were obtained for all the stars. The abundances of the light elements and Eu and the rotational velocities were derived using spectral synthesis technique. We obtained a mean metallicity of [Fe/H] = -0.17 ± 0.05. We found that the abundances of all elements are similar to field giants and/or giants of open clusters, even for the s-process elements, which are enhanced as in other young open clusters. We show that the spectroscopic binaries NGC 2447-26, 38, and 42 are yellow-straggler stars, of which the primary is a giant star and the secondary a main-sequence A-type star.

Influence of syllable structure on L2 auditory word learning.

PubMed

Hamada, Megumi; Goya, Hideki

2015-04-01

This study investigated the role of syllable structure in L2 auditory word learning. Based on research on cross-linguistic variation of speech perception and lexical memory, it was hypothesized that Japanese L1 learners of English would learn English words with an open-syllable structure without consonant clusters better than words with a closed-syllable structure and consonant clusters. Two groups of college students (Japanese group, N = 22; and native speakers of English, N = 21) learned paired English pseudowords and pictures. The pseudoword types differed in terms of the syllable structure and consonant clusters (congruent vs. incongruent) and the position of consonant clusters (coda vs. onset). Recall accuracy was higher for the pseudowords in the congruent type and the pseudowords with the coda-consonant clusters. The syllable structure effect was obtained from both participant groups, disconfirming the hypothesized cross-linguistic influence on L2 auditory word learning.

Mechanical gate control for atom-by-atom cluster assembly with scanning probe microscopy.

PubMed

Sugimoto, Yoshiaki; Yurtsever, Ayhan; Hirayama, Naoki; Abe, Masayuki; Morita, Seizo

2014-07-11

Nanoclusters supported on substrates are of great importance in physics and chemistry as well as in technical applications, such as single-electron transistors and nanocatalysts. The properties of nanoclusters differ significantly from those of either the constituent atoms or the bulk solid, and are highly sensitive to size and chemical composition. Here we propose a novel atom gating technique to assemble various atom clusters composed of a defined number of atoms at room temperature. The present gating operation is based on the transfer of single diffusing atoms among nanospaces governed by gates, which can be opened in response to the chemical interaction force with a scanning probe microscope tip. This method provides an alternative way to create pre-designed atom clusters with different chemical compositions and to evaluate their chemical stabilities, thus enabling investigation into the influence that a single dopant atom incorporated into the host clusters has on a given cluster stability.

Characteristic and factors of competitive maritime industry clusters in Indonesia

NASA Astrophysics Data System (ADS)

Marlyana, N.; Tontowi, A. E.; Yuniarto, H. A.

2017-12-01

Indonesia is situated in the strategic position between two oceans therefore is identified as a maritime state. The fact opens big opportunity to build a competitive maritime industry. However, potential factors to boost the competitive maritime industry still need to be explored. The objective of this paper is then to determine the main characteristics and potential factors of competitive maritime industry cluster. Qualitative analysis based on literature review has been carried out in two aspects. First, benchmarking analysis conducted to distinguish the most relevant factors of maritime clusters in several countries in Europe (Norway, Spain, South West of England) and Asia (China, South Korea, Malaysia). Seven key dimensions are used for this benchmarking. Secondly, the competitiveness of maritime clusters in Indonesia was diagnosed through a reconceptualization of Porter’s Diamond model. There were four interlinked of advanced factors in and between companies within clusters, which can be influenced in a proactive way by government.

Versatile Method for the Site-Specific Modification of DNA with Boron Clusters: Anti-Epidermal Growth Factor Receptor (EGFR) Antisense Oligonucleotide Case.

PubMed

Ebenryter-Olbińska, Katarzyna; Kaniowski, Damian; Sobczak, Milena; Wojtczak, Błażej A; Janczak, Sławomir; Wielgus, Ewelina; Nawrot, Barbara; Leśnikowski, Zbigniew J

2017-11-21

A general and convenient approach for the incorporation of different types of boron clusters into specific locations of the DNA-oligonucleotide chain based on the automated phosphoramidite method of oligonucleotide synthesis and post-synthetic "click chemistry" modification has been developed. Pronounced effects of boron-cluster modification on the physico- and biochemical properties of the antisense oligonucleotides were observed. The silencing activity of antisense oligonucleotides bearing a single boron cluster modification in the middle of the oligonucleotide chain was substantially higher than that of unmodified oligonucleotides. This finding may be of importance for the design of therapeutic nucleic acids with improved properties. The proposed synthetic methodology broadens the availability of nucleic acid-boron cluster conjugates and opens up new avenues for their potential practical use. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Cluster-based MOFs with accelerated chemical conversion of CO2 through C-C bond formation.

PubMed

Xiong, Gang; Yu, Bing; Dong, Jie; Shi, Ying; Zhao, Bin; He, Liang-Nian

2017-05-30

Investigations on metal-organic frameworks (MOFs) as direct catalysts have been well documented, but direct catalysis of the chemical conversion of terminal alkynes and CO 2 as chemical feedstock by MOFs into valuable chemical products has never been reported. We report here two cluster-based MOFs I and II assembled from a multinuclear Gd-cluster and Cu-cluster, displaying high thermal and solvent stabilities. I and II as heterogeneous catalysts possess active catalytic centers [Cu 12 I 12 ] and [Cu 3 I 2 ], respectively, exhibiting excellent catalytic performance in the carboxylation reactions of CO 2 with 14 kinds of terminal alkynes under 1 atm and mild conditions. For the first time catalysis of the carboxylation reaction of terminal alkynes with CO 2 by MOF materials without any cocatalyst/additive is reported. This work not only reduces greenhouse gas emission but also provides highly valuable materials, opening a wide space in seeking recoverable catalysts to accelerate the chemical conversion of CO 2 .

Fast gene ontology based clustering for microarray experiments.

PubMed

Ovaska, Kristian; Laakso, Marko; Hautaniemi, Sampsa

2008-11-21

Analysis of a microarray experiment often results in a list of hundreds of disease-associated genes. In order to suggest common biological processes and functions for these genes, Gene Ontology annotations with statistical testing are widely used. However, these analyses can produce a very large number of significantly altered biological processes. Thus, it is often challenging to interpret GO results and identify novel testable biological hypotheses. We present fast software for advanced gene annotation using semantic similarity for Gene Ontology terms combined with clustering and heat map visualisation. The methodology allows rapid identification of genes sharing the same Gene Ontology cluster. Our R based semantic similarity open-source package has a speed advantage of over 2000-fold compared to existing implementations. From the resulting hierarchical clustering dendrogram genes sharing a GO term can be identified, and their differences in the gene expression patterns can be seen from the heat map. These methods facilitate advanced annotation of genes resulting from data analysis.

DIRECT N-BODY MODELING OF THE OLD OPEN CLUSTER NGC 188: A DETAILED COMPARISON OF THEORETICAL AND OBSERVED BINARY STAR AND BLUE STRAGGLER POPULATIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Geller, Aaron M.; Hurley, Jarrod R.; Mathieu, Robert D., E-mail: a-geller@northwestern.edu, E-mail: mathieu@astro.wisc.edu, E-mail: jhurley@astro.swin.edu.au

2013-01-01

Following on from a recently completed radial-velocity survey of the old (7 Gyr) open cluster NGC 188 in which we studied in detail the solar-type hard binaries and blue stragglers of the cluster, here we investigate the dynamical evolution of NGC 188 through a sophisticated N-body model. Importantly, we employ the observed binary properties of the young (180 Myr) open cluster M35, where possible, to guide our choices for parameters of the initial binary population. We apply pre-main-sequence tidal circularization and a substantial increase to the main-sequence tidal circularization rate, both of which are necessary to match the observed tidalmore » circularization periods in the literature, including that of NGC 188. At 7 Gyr the main-sequence solar-type hard-binary population in the model matches that of NGC 188 in both binary frequency and distributions of orbital parameters. This agreement between the model and observations is in a large part due to the similarities between the NGC 188 and M35 solar-type binaries. Indeed, among the 7 Gyr main-sequence binaries in the model, only those with P {approx}> 1000 days begin to show potentially observable evidence for modifications by dynamical encounters, even after 7 Gyr of evolution within the star cluster. This emphasizes the importance of defining accurate initial conditions for star cluster models, which we propose is best accomplished through comparisons with observations of young open clusters like M35. Furthermore, this finding suggests that observations of the present-day binaries in even old open clusters can provide valuable information on their primordial binary populations. However, despite the model's success at matching the observed solar-type main-sequence population, the model underproduces blue stragglers and produces an overabundance of long-period circular main-sequence-white-dwarf binaries as compared with the true cluster. We explore several potential solutions to the paucity of blue stragglers and conclude that the model dramatically underproduces blue stragglers through mass-transfer processes. We suggest that common-envelope evolution may have been incorrectly imposed on the progenitors of the spurious long-period circular main-sequence-white-dwarf binaries, which perhaps instead should have gone through stable mass transfer to create blue stragglers, thereby bringing both the number and binary frequency of the blue straggler population in the model into agreement with the true blue stragglers in NGC 188. Thus, improvements in the physics of mass transfer and common-envelope evolution employed in the model may in fact solve both discrepancies with the observations. This project highlights the unique accessibility of open clusters to both comprehensive observational surveys and full-scale N-body simulations, both of which have only recently matured sufficiently to enable such a project, and underscores the importance of open clusters to the study of star cluster dynamics.« less

Coherent clusters of inertial particles in homogeneous turbulence

NASA Astrophysics Data System (ADS)

Baker, Lucia; Frankel, Ari; Mani, Ali; Coletti, Filippo

2016-11-01

Clustering of heavy particles in turbulent flows manifests itself in a broad spectrum of physical phenomena, including sediment transport, cloud formation, and spray combustion. However, a clear topological definition of particle cluster has been lacking, limiting our ability to describe their features and dynamics. Here we introduce a definition of coherent cluster based on self-similarity, and apply it to the distribution of heavy particles in direct numerical simulations of homogeneous isotropic turbulence. We consider a range of particle Stokes numbers, with and without the effect of gravity. Clusters show self-similarity at length scales larger than twice the Kolmogorov length, with a specific fractal dimension. In the absence of gravity, clusters demonstrate a tendency to sample regions of the flow where strain is dominant over vorticity, and to align themselves with the local vorticity vector; when gravity is present, the clusters tend to align themselves with gravity, and their fall speed is different from the average settling velocity. This approach yields observations which are consistent with findings obtained from previous studies while opening new avenues for analysis of the topology and evolution of particle clusters in a wealth of applications.

Rotation periods of open-cluster stars, 3

NASA Technical Reports Server (NTRS)

Prosser, Charles F.; Shetrone, Matthew D.; Dasgupta, Amil; Backman, Dana E.; Laaksonen, Bentley D.; Baker, Shawn W.; Marschall, Laurence A.; Whitney, Barbara A.; Kuijken, Konrad; Stauffer, John R.

1995-01-01

We present the results from a photometric monitoring program of 15 open cluster stars and one weak-lined T Tauri star during late 1993/early 1994. Several show rotators which are members of the Alpha Persei, Pleiades, and Hyades open clusters have been monitored and period estimates derived. Using all available Pleiades stars with photometric periods together with current X-ray flux measurements, we illustrate the X-ray activity/rotation relation among Pleiades late-G/K dwarfs. The data show a clear break in the rotation-activity relation around P approximately 6-7 days -- in general accordance with previous results using more heterogeneous samples of G/K stars.

CHEMICAL ABUNDANCES OF MEMBER STARS IN THE OPEN CLUSTER NGC 2632 (PRAESEPE)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, X. L.; Chen, Y. Q.; Zhao, G.

2015-11-15

Based on high-resolution, high signal-to-noise ratio spectra, we present abundances of 17 elements (Fe, O, Na, Mg, Al, Si, Ca, Sc, Ti, V, Cr, Co, Ni, Y, Zr, Ba, La) for six stars (one Am star, one F dwarf star, and four GK giant stars) and radial velocities for 18 proper-motion selected member stars in the open cluster NGC 2632. In the Am star, s-process elements Y and Ba are clearly overabundant, which may be considered as an indicator of a peculiar Am star. The average [Fe/H] is 0.16 ± 0.06 from four GK giant member stars, which is similarmore » to that of solar-type stars in the literature. As compared with dwarf stars, significant overabundances are found for Na, Mg, and Ba elements in our giant stars, which can be explained by the evolutionary effect. We also detect a star-to-star scatter of [Na/Fe] ratios among four giants which locate approximately at the same position in the CMD. Finally, we perform an analysis on the possible connection between the abundance and spatial structure of NGC 2632, but we find no inhomogeneous abundance among different clumps of stars in this cluster based on our limited sample.« less

Design and deployment of an elastic network test-bed in IHEP data center based on SDN

NASA Astrophysics Data System (ADS)

Zeng, Shan; Qi, Fazhi; Chen, Gang

2017-10-01

High energy physics experiments produce huge amounts of raw data, while because of the sharing characteristics of the network resources, there is no guarantee of the available bandwidth for each experiment which may cause link congestion problems. On the other side, with the development of cloud computing technologies, IHEP have established a cloud platform based on OpenStack which can ensure the flexibility of the computing and storage resources, and more and more computing applications have been deployed on virtual machines established by OpenStack. However, under the traditional network architecture, network capability can’t be required elastically, which becomes the bottleneck of restricting the flexible application of cloud computing. In order to solve the above problems, we propose an elastic cloud data center network architecture based on SDN, and we also design a high performance controller cluster based on OpenDaylight. In the end, we present our current test results.

Astrophysical parameters of open star clusters using 2MASS JHKs data

NASA Astrophysics Data System (ADS)

Durgapal, Alok; Bisht, Devendra; Yadav, Ramakant Singh

2018-04-01

In the present analysis we have estimated the fundamental parameters of two poorly studied open star clusters, namely Teutsch 61 and Czernik 3, using 2MASS JHKs data. We have used the color-magnitude and colour-colour diagrams to determine their fundamental parameters.

GREEN SUPERCOMPUTING IN A DESKTOP BOX

DOE Office of Scientific and Technical Information (OSTI.GOV)

HSU, CHUNG-HSING; FENG, WU-CHUN; CHING, AVERY

2007-01-17

The computer workstation, introduced by Sun Microsystems in 1982, was the tool of choice for scientists and engineers as an interactive computing environment for the development of scientific codes. However, by the mid-1990s, the performance of workstations began to lag behind high-end commodity PCs. This, coupled with the disappearance of BSD-based operating systems in workstations and the emergence of Linux as an open-source operating system for PCs, arguably led to the demise of the workstation as we knew it. Around the same time, computational scientists started to leverage PCs running Linux to create a commodity-based (Beowulf) cluster that provided dedicatedmore » computer cycles, i.e., supercomputing for the rest of us, as a cost-effective alternative to large supercomputers, i.e., supercomputing for the few. However, as the cluster movement has matured, with respect to cluster hardware and open-source software, these clusters have become much more like their large-scale supercomputing brethren - a shared (and power-hungry) datacenter resource that must reside in a machine-cooled room in order to operate properly. Consequently, the above observations, when coupled with the ever-increasing performance gap between the PC and cluster supercomputer, provide the motivation for a 'green' desktop supercomputer - a turnkey solution that provides an interactive and parallel computing environment with the approximate form factor of a Sun SPARCstation 1 'pizza box' workstation. In this paper, they present the hardware and software architecture of such a solution as well as its prowess as a developmental platform for parallel codes. In short, imagine a 12-node personal desktop supercomputer that achieves 14 Gflops on Linpack but sips only 185 watts of power at load, resulting in a performance-power ratio that is over 300% better than their reference SMP platform.« less

Map-based trigonometric parallaxes of open clusters - The Pleiades

NASA Technical Reports Server (NTRS)

Gatewood, George; Castelaz, Michael; Han, Inwoo; Persinger, Timothy; Stein, John

1990-01-01

The multichannel astrometric photometer and Thaw refractor of the University of Pittsburgh's Allegheny Observatory have been used to determine the trigonometric parallax of the Pleiades star cluster. The distance determined, 150 with a standard error of 18 parsecs, places the cluster slightly farther away than generally accepted. This suggests that the basis of many estimations of the cosmic distance scale is approximately 20 percent short. The accuracy of the determination is limited by the number and choice of reference stars. With careful attention to the selection of reference stars in several Pleiades regions, it should be possible to examine differences in the photometric and trigonometric modulus at a precision of 0.1 magnitudes.

Search for Pulsating Stars in the Open Cluster NGC 1502

NASA Astrophysics Data System (ADS)

Stęślicki, M.

2006-04-01

We present results of a variability search in the field of the young open cluster NGC 1502. We confirm that a beta Cephei suspect WEBDA 26 is indeed pulsating with a period of 0.09612 d and semi-amplitude of about 3 mmag in V. A new VI light curve of the bright eclipsing binary and cluster member SZ Cam was obtained. In addition, we found two new variable stars. One is an interesting eclipsing binary showing total eclipses, which can be used to derive the distance to the cluster once radial velocities of the components will be obtained.

On galaxy structure: CO clouds, open clusters and stars between 270 and 300 deg

NASA Astrophysics Data System (ADS)

Giorgi, E. E.; Carraro, G.; Moitinho, A.; Perren, G. I.; Bronfman, L.; Vázquez, R. A.

2017-10-01

The most used open cluster databases of our Galaxy include about 240 objects located in the region to in galactic longitude and to in galactic latitude. Only 146 out of the total number of these clusters have been investigated with some detail. On this occasion we present preliminary results of a study including optical and CO radio observations sweeping the above mentioned extension of the Milky Way combined with literature data. As for optical data we have selected a total of 16 regions including potential clusters (some of them never observed before) to be surveyed in the system with the main purpose of scrutinising not only the properties of the open cluster system in that place but also to detect and characterise the properties of field hot stars that could help to reveal the far spiral structure in this place. The present study is a continuation of our sine die project aimed at describing the spiral structure in the third and fourth galactic quadrants.

First photometric analysis of six open cluster candidates

NASA Astrophysics Data System (ADS)

Piatti, A. E.; Clariá, J. J.; Ahumada, A. V.

2011-10-01

In this study we try to clarify the nature of six catalogued open cluster (OC) candidates using CCD UBVI_{KC} photometry down to V = 22. The objects are Haffner 3, Haffner 5, NGC 2368, Haffner 25, Hogg 3 and Hogg 4. None of them was found to be a real OC.

Graph configuration model based evaluation of the education-occupation match

PubMed Central

2018-01-01

To study education—occupation matchings we developed a bipartite network model of education to work transition and a graph configuration model based metric. We studied the career paths of 15 thousand Hungarian students based on the integrated database of the National Tax Administration, the National Health Insurance Fund, and the higher education information system of the Hungarian Government. A brief analysis of gender pay gap and the spatial distribution of over-education is presented to demonstrate the background of the research and the resulted open dataset. We highlighted the hierarchical and clustered structure of the career paths based on the multi-resolution analysis of the graph modularity. The results of the cluster analysis can support policymakers to fine-tune the fragmented program structure of higher education. PMID:29509783

Graph configuration model based evaluation of the education-occupation match.

PubMed

Gadar, Laszlo; Abonyi, Janos

2018-01-01

To study education-occupation matchings we developed a bipartite network model of education to work transition and a graph configuration model based metric. We studied the career paths of 15 thousand Hungarian students based on the integrated database of the National Tax Administration, the National Health Insurance Fund, and the higher education information system of the Hungarian Government. A brief analysis of gender pay gap and the spatial distribution of over-education is presented to demonstrate the background of the research and the resulted open dataset. We highlighted the hierarchical and clustered structure of the career paths based on the multi-resolution analysis of the graph modularity. The results of the cluster analysis can support policymakers to fine-tune the fragmented program structure of higher education.

A QUANTITATIVE ANALYSIS OF DISTANT OPEN CLUSTERS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Janes, Kenneth A.; Hoq, Sadia

2011-03-15

The oldest open star clusters are important for tracing the history of the Galactic disk, but many of the more distant clusters are heavily reddened and projected against the rich stellar background of the Galaxy. We have undertaken an investigation of several distant clusters (Berkeley 19, Berkeley 44, King 25, NGC 6802, NGC 6827, Berkeley 52, Berkeley 56, NGC 7142, NGC 7245, and King 9) to develop procedures for separating probable cluster members from the background field. We next created a simple quantitative approach for finding approximate cluster distances, reddenings, and ages. We first conclude that with the possible exceptionmore » of King 25 they are probably all physical clusters. We also find that for these distant clusters our typical errors are about {+-}0.07 in E(B - V), {+-}0.15 in log(age), and {+-}0.25 in (m - M){sub o}. The clusters range in age from 470 Myr to 7 Gyr and range from 7.1 to 16.4 kpc from the Galactic center.« less

VizieR Online Data Catalog: Gaia DR1 open cluster members (Gaia Collaboration+, 2017)

NASA Astrophysics Data System (ADS)

Gaia Collaboration; van Leeuwen F.; Vallenari, A.; Jordi, C.; Lindegren, L.; Bastian, U.; Prusti, T.; de Bruijne, J. H. J.; Brown, A. G. A.; Babusiaux, C.; Bailer-Jones, C. A. L.; Biermann, M.; Evans, D. W.; Eyer, L.; Jansen, F.; Klioner, S. A.; Lammers, U.; Luri, X.; Mignard, F.; Panem, C.; Pourbaix, D.; Randich, S.; Sartoretti, P.; Siddiqui, H. I.; Soubiran, C.; Valette, V.; Walton, N. A.; Aerts, C.; Arenou, F.; Cropper, M.; Drimmel, R.; Hog, E.; Katz, D.; Lattanzi, M. G.; O'Mullane, W.; Grebel, E. K.; Holland, A. D.; Huc, C.; Passot, X.; Perryman, M.; Bramante, L.; Cacciari, C.; Castaneda, J.; Chaoul, L.; Cheek, N.; de Angeli, F.; Fabricius, C.; Guerra, R.; Hernandez, J.; Jean-Antoine-Piccolo, A.; Masana, E.; Messineo, R.; Mowlavi, N.; Nienartowicz, K.; Ordonez-Blanco, D.; Panuzzo, P.; Portell, J.; Richards, P. J.; Riello, M.; Seabroke, G. M.; Tanga, P.; Thevenin, F.; Torra, J.; Els, S. G.; Gracia-Abril, G.; Comoretto, G.; Garcia-Reinaldos, M.; Lock, T.; Mercier, E.; Altmann, M.; Andrae, R.; Astraatmadja, T. L.; Bellas-Velidis, I.; Benson, K.; Berthier, J.; Blomme, R.; Busso, G.; Carry, B.; Cellino, A.; Clementini, G.; Cowell, S.; Creevey, O.; Cuypers, J.; Davidson, M.; De Ridder, J.; de Torres, A.; Delchambre, L.; Dell'Oro, A.; Ducourant, C.; Fremat, Y.; Garcia-Torres, M.; Gosset, E.; Halbwachs, J.-L.; Hambly, N. C.; Harrison, D. L.; Hauser, M.; Hestroffer, D.; Hodgkin, S. T.; Huckle, H. E.; Hutton, A.; Jasniewicz, G.; Jordan, S.; Kontizas, M.; Korn, A. J.; Lanzafame, A. C.; Manteiga, M.; Moitinho, A.; Muinonen, K.; Osinde, J.; Pancino, E.; Pauwels, T.; Petit, J.-M.; Recio-Blanco, A.; Robin, A. C.; Sarro, L. M.; Siopis, C.; Smith, M.; Smith, K. W.; Sozzetti, A.; Thuillot, W.; van Reeven, W.; Viala, Y.; Abbas, U.; Abreu Aramburu, A.; Accart, S.; Aguado, J. J.; Allan, P. M.; Allasia, W.; Altavilla, G.; Alvarez, M. A.; Alves, J.; Anderson, R. I.; Andrei, A. H.; Anglada Varela, E.; Antiche, E.; Antoja, T.; Anton, S.; Arcay, B.; Bach, N.; Baker, S. G.; Balaguer-Nunez, L.; Barache, C.; Barata, C.; Barbier, A.; Barblan, F.; Barrado, Y. Navascues D.; Barros, M.; Barstow, M. A.; Becciani, U.; Bellazzini, M.; Bello Garcia, A.; Belokuro, V. V.; Ben Djoya, P.; Berihuete, A.; Bianchi, L.; Bienayme, O.; Billebaud, F.; Blagorodnova, N.; Blanco-Cuaresma, S.; Boch, T.; Bombrun, A.; Borrachero, R.; Bouquillon, S.; Bourda, G.; Bouy, H.; Bragaglia, A.; Breddels, M. A.; Brouillet, N.; Bruesemeister, T.; Bucciarelli, B.; Burgess, P.; Burgon, R.; Burlacu, A.; Busonero, D.; Buzzi, R.; Caffau, E.; Cambras, J.; Campbell, H.; Cancelliere, R.; Cantat-Gaudin, T.; Carlucci, T.; Carrasco, J. M.; Castellani, M.; Charlot, P.; Charnas, J.; Chiavassa, A.; Clotet, M.; Cocozza, G.; Collins, R. S.; Costigan, G.; Crifo, F.; Cross, N. J. G.; Crosta, M.; Crowley, C.; Dafonte, C.; Damerdji, Y.; Dapergolas, A.; David, P.; David, M.; De Cat, P.; de Felice, F.; de Laverny, P.; de Luise, F.; de March, R.; de Martino, D.; de Souza, R.; Debosscher, J.; Del Pozo, E.; Delbo, M.; Delgado, A.; Delgado, H. E.; Di Matteo, P.; Diakite, S.; Distefano, E.; Dolding, C.; Dos Anjos, S.; Drazinos, P.; Duran, J.; Dzigan, Y.; Edvardsson, B.; Enke, H.; Evans, N. W.; Eynard Bontemps, G.; Fabre, C.; Fabrizio, M.; Faigler, S.; Falcao, A. J.; Farras Casas, M.; Federici, L.; Fedorets, G.; Fernandez-Hernandez, J.; Fernique, P.; Fienga, A.; Figueras, F.; Filippi, F.; Findeisen, K.; Fonti, A.; Fouesneau, M.; Fraile, E.; Fraser, M.; Fuchs, J.; Gai, M.; Galleti, S.; Galluccio, L.; Garabato, D.; Garcia-Sedano, F.; Garofalo, A.; Garralda, N.; Gavras, P.; Gerssen, J.; Geyer, R.; Gilmore, G.; Girona, S.; Giuffrida, G.; Gomes, M.; Gonzalez-Marcos, A.; Gonzalez-Nunez, J.; Gonzalez-Vidal, J. J.; Granvik, M.; Guerrier, A.; Guillout, P.; Guiraud, J.; Gurpide, A.; Gutierrez-Sanchez, R.; Guy, L. P.; Haigron, R.; Hatzidimitriou, D.; Haywood, M.; Heiter, U.; Helmi, A.; Hobbs, D.; Hofmann, W.; Holl, B.; Holland, G.; Hunt, J. A. S.; Hypki, A.; Icardi, V.; Irwin, M.; Jevardat de Fombelle, G.; Jofre, P.; Jonker, P. G.; Jorissen, A.; Julbe, F.; Karampelas, A.; Kochoska, A.; Kohley, R.; Kolenberg, K.; Kontizas, E.; Koposov, S. E.; Kordopatis, G.; Koubsky, P.; Krone-Martins, A.; Kudryashova, M.; Kull, I.; Bachchan, R. K.; Lacoste-Seris, F.; Lanza, A. F.; Lavigne, J.-B.; Le Poncin-Lafitte, C.; Lebreton, Y.; Lebzelter, T.; Leccia, S.; Lecler, C. N.; Lecoeur-Taibi, I.; Lemaitre, V.; Lenhardt, H.; Leroux, F.; Liao, S.; Licata, E.; Lindstrom, H. E. P.; Lister, T. A.; Livanou, E.; Lobel, A.; Loeffler, W.; Lopez, M.; Lorenz, D.; MacDonald, I.; Magalhaes Fernandes, T.; Managau, S.; Mann, R. G.; Mantelet, G.; Marchal, O.; Marchant, J. M.; Marconi, M.; Marinoni, S.; Marrese, P. M.; Marschalko, G.; Marshall, D. J.; Martin-Fleitas, J. M.; Martino, M.; Mary, N.; Matijevic, G.; Mazeh, T.; McMillan, P. J.; Messina, S.; Michalik, D.; Millar, N. R.; Miranda, B. M. H.; Molina, D.; Molinaro, R.; Molinaro, M.; Molnar, L.; Moniez, M.; Montegriffo, P.; Mor, R.; Mora, A.; Morbidelli, R.; Morel, T.; Morgenthaler, S.; Morris, D.; Mulone, A. F.; Muraveva, T.; Musella, I.; Narbonne, J.; Nelemans, G.; Nicastro, L.; Noval, L.; Ordenovic, C.; Ordieres-Mere, J.; Osborne, P.; Pagani, C.; Pagano, I.; Pailler, F.; Palacin, H.; Palaversa, L.; Parsons, P.; Pecoraro, M.; Pedrosa, R.; Pentikaeinen, H.; Pichon, B.; Piersimoni, A. M.; Pineau, F.-X.; Plachy, E.; Plum, G.; Poujoulet, E.; Prsa, A.; Pulone, L.; Ragaini, S.; Rago, S.; Rambaux, N.; Ramos-Lerate, M.; Ranalli, P.; Rauw, G.; Read, A.; Regibo, S.; Reyle, C.; Ribeiro, R. A.; Rimoldini, L.; Ripepi, V.; Riva, A.; Rixon, G.; Roelens, M.; Romero-Gomez, M.; Rowell, N.; Royer, F.; Ruiz-Dern, L.; Sadowski, G.; Sagrista Selles, T.; Sahlmann, J.; Salgado, J.; Salguero, E.; Sarasso, M.; Savietto, H.; Schultheis, M.; Sciacca, E.; Segol, M.; Segovia, J. C.; Segransan, D.; Shih, I.-C.; Smareglia, R.; Smart, R. L.; Solano, E.; Solitro, F.; Sordo, R.; Soria Nieto, S.; Souchay, J.; Spagna, A.; Spoto, F.; Stampa, U.; Steele, I. A.; Steidelmueller, H.; Stephenson, C. A.; Stoev, H.; Suess, F. F.; Sueveges, M.; Surdej, J.; Szabados, L.; Szegedi-Elek, E.; Tapiador, D.; Taris, F.; Tauran, G.; Taylor, M. B.; Teixeira, R.; Terrett, D.; Tingley, B.; Trager, S. C.; Turon, C.; Ulla, A.; Utrilla, E.; Valentini, G.; van Elteren, A.; van Hemelryck, E.; Vanleeuwen, M.; Varadi, M.; Vecchiato, A.; Veljanoski, J.; Via, T.; Vicente, D.; Vogt, S.; Voss, H.; Votruba, V.; Voutsinas, S.; Walmsley, G.; Weiler, M.; Weingrill, K.; Wevers, T.; Wyrzykowski, L.; Yoldas, A.; Zerjal, M.; Zucker, S.; Zurbach, C.; Zwitter, T.; Alecu, A.; Allen, M.; Allende Prieto, C.; Amorim, A.; Anglada-Escude, G.; Arsenijevic, V.; Azaz, S.; Balm, P.; Beck, M.; Bernstein, H.-H.; Bigot, L.; Bijaoui, A.; Blasco, C.; Bonfigli, M.; Bono, G.; Boudreault, S.; Bressan, A.; Brown, S.; Brunet, P.-M.; Bunclark, P.; Buonanno, R.; Butkevich, A. G.; Carret, C.; Carrion, C.; Chemin, L.; Chereau, F.; Corcione, L.; Darmigny, E.; de Boer, K. S.; de Teodoro, P.; de Zeeuw, P. T.; Delle Luche, C.; Domingues, C. D.; Dubath, P.; Fodor, F.; Frezouls, B.; Fries, A.; Fustes, D.; Fyfe, D.; Gallardo, E.; Gallegos, J.; Gardiol, D.; Gebran, M.; Gomboc, A.; Gomez, A.; Grux, E.; Gueguen, A.; Heyrovsky, A.; Hoar, J.; Iannicola, G.; Isasi Parache, Y.; Janotto, A.-M.; Joliet, E.; Jonckheere, A.; Keil, R.; Kim, D.-W.; Klagyivik, P.; Klar, J.; Knude, J.; Kochukhov, O.; Kolka, I.; Kos, J.; Kutka, A.; Lainey, V.; Lebouquin, D.; Liu, C.; Loreggia, D.; Makarov, V. V.; Marseille, M. G.; Martayan, C.; Martinez-Rubi, O.; Massart, B.; Meynadier, F.; Mignot, S.; Munari, U.; Nguyen, A.-T.; Nordlander, T.; O'Flaherty, K. S.; Ocvirk, P.; Olias Sanz, A.; Ortiz, P.; Osorio, J.; Oszkiewicz, D.; Ouzounis, A.; Palmer, M.; Park, P.; Pasquato, E.; Peltzer, C.; Peralta, J.; Peturaud, F.; Pieniluoma, T.; Pigozzi, E.; Poels, J.; Prat, G.; Prod'homme, T.; Raison, F.; Rebordao, J. M.; Risquez, D.; Rocca-Volmerange, B.; Rosen, S.; Ruiz-Fuertes, M. I.; Russo, F.; Sembay, S.; Serraller Vizcaino, I.; Short, A.; Siebert, A.; Silva, H.; Sinachopoulos, D.; Slezak, E.; Soffel, M.; Sosnowska, D.; Straizys, V.; Ter Linden, M.; Terrell, D.; Theil, S.; Tiede, C.; Troisi, L.; Tsalmantza, P.; Tur, D.; Vaccari, M.; Vachier, F.; Valles, P.; van Hamme, W.; Veltz, L.; Virtanen, J.; Wallut, J.-M.; Wichmann, R.; Wilkinson, M. I.; Ziaeepour, H.; Zschocke, S.

2017-04-01

We have determined and examined the astrometric data for 19 open clusters, ranging from the Hyades at just under 47pc to NGC 2422 at nearly 440pc. The clusters are : the Hyades, Coma Berenices, the Pleiades, Praesepe, alpha Per, IC 2391, IC 2602, Blanco 1, NGC 2451, NGC 6475, NGC 7092, NGC 2516, NGC 2232, IC 4665, NGC 6633, Collinder 140, NGC 2422, NGC 3532 and NGC 2547. (2 data files).

Mega-Amp Opening Switch with Nested Electrodes/Pulsed Generator of Ion and Ion Cluster Beams

DTIC Science & Technology

1987-07-30

The use of a plasma focus as a mega-amp opening switch has been demonstrated by two modes of operation: (a) Single shot mode; (b) Repetitive Mode...energy level and under the same voltage and filling-pressure conditions but without field distortion elements. Misfirings of the plasma focus machine...are also virtually eliminated by using FDE at the coaxial electrode breech. The tests (based on about 10000 shots and five plasma focus machines

The Low Mass IMF in Young Open Clusters

NASA Astrophysics Data System (ADS)

Williams, Douglas M.

1995-01-01

We present the results of the investigation of the Initial Mass Function at the end of the Main Sequence in young open clusters. We find that over a large range in age and environment the IMFs are similar to each other, and to recent determinations of the field star IMF. We have obtained V, I, and K band photometry of fields in the three relatively unembedded open clusters. The photometry reaches down to various masses in each cluster: 0.08{cal M}_⊙ for Praesepe, 0.04{cal M}odot for the Pleiades, and 0.15{cal M}_⊙ for NGC 7160. We compare the methods for estimating the masses of young, embedded stars developed by Comeron et al. (1993 - CRBR) and by Strom, Kepner, & Strom (1995) and show them to be in good agreement. Spectra in the 2 mu m region of six low mass objects from CRBR are also in agreement with the mass estimates using these methods. The spectrum of a brown dwarf candidate is used to place an upper limit on its mass of 60% of the minimum required for hydrogen burning. The IMFs from these four clusters plus NGC 2024 are shown to be in agreement with each other. The composite MF can be fitted with a power law between 0.04 and 0.5 {cal M}_⊙ with a slope of -0.75 +/- 0.3. There is no evidence for a cutoff at the bottom of the main sequence (0.08{cal M}odot); brown dwarfs appear to be abundant in open clusters. However, the slope of the MF is well above the value of _sp {~}<-2 required for very low mass stars and brown dwarfs to contribute a significant portion of the mass of open clusters. The composite cluster MF also is in agreement with recent determinations of the field star IMF for stellar masses. The field star data do not extend into the brown dwarf range; however, if we extrapolate in accordance with the cluster MF, we conclude that brown dwarfs probably do not contribute significantly to the dark matter.

Accurate age determinations of several nearby open clusters containing magnetic Ap stars

NASA Astrophysics Data System (ADS)

Silaj, J.; Landstreet, J. D.

2014-06-01

Context. To study the time evolution of magnetic fields, chemical abundance peculiarities, and other characteristics of magnetic Ap and Bp stars during their main sequence lives, a sample of these stars in open clusters has been obtained, as such stars can be assumed to have the same ages as the clusters to which they belong. However, in exploring age determinations in the literature, we find a large dispersion among different age determinations, even for bright, nearby clusters. Aims: Our aim is to obtain ages that are as accurate as possible for the seven nearby open clusters α Per, Coma Ber, IC 2602, NGC 2232, NGC 2451A, NGC 2516, and NGC 6475, each of which contains at least one magnetic Ap or Bp star. Simultaneously, we test the current calibrations of Te and luminosity for the Ap/Bp star members, and identify clearly blue stragglers in the clusters studied. Methods: We explore the possibility that isochrone fitting in the theoretical Hertzsprung-Russell diagram (i.e. log (L/L⊙) vs. log Te), rather than in the conventional colour-magnitude diagram, can provide more precise and accurate cluster ages, with well-defined uncertainties. Results: Well-defined ages are found for all the clusters studied. For the nearby clusters studied, the derived ages are not very sensitive to the small uncertainties in distance, reddening, membership, metallicity, or choice of isochrones. Our age determinations are all within the range of previously determined values, but the associated uncertainties are considerably smaller than the spread in recent age determinations from the literature. Furthermore, examination of proper motions and HR diagrams confirms that the Ap stars identified in these clusters are members, and that the presently accepted temperature scale and bolometric corrections for Ap stars are approximately correct. We show that in these theoretical HR diagrams blue stragglers are particularly easy to identify. Conclusions: Constructing the theoretical HR diagram of a nearby open cluster makes possible an accurate age determination, with well defined uncertainty. This diagnostic of a cluster also provides a useful tool for studying unusual stars such as Ap stars and blue stragglers. Table 3 is available in electronic form at http://www.aanda.org

CO2 Cluster Ion Beam, an Alternative Projectile for Secondary Ion Mass Spectrometry.

PubMed

Tian, Hua; Maciążek, Dawid; Postawa, Zbigniew; Garrison, Barbara J; Winograd, Nicholas

2016-09-01

The emergence of argon-based gas cluster ion beams for SIMS experiments opens new possibilities for molecular depth profiling and 3D chemical imaging. These beams generally leave less surface chemical damage and yield mass spectra with reduced fragmentation compared with smaller cluster projectiles. For nanoscale bioimaging applications, however, limited sensitivity due to low ionization probability and technical challenges of beam focusing remain problematic. The use of gas cluster ion beams based upon systems other than argon offer an opportunity to resolve these difficulties. Here we report on the prospects of employing CO2 as a simple alternative to argon. Ionization efficiency, chemical damage, sputter rate, and beam focus are investigated on model compounds using a series of CO2 and Ar cluster projectiles (cluster size 1000-5000) with the same mass. The results show that the two projectiles are very similar in each of these aspects. Computer simulations comparing the impact of Ar2000 and (CO2)2000 on an organic target also confirm that the CO2 molecules in the cluster projectile remain intact, acting as a single particle of m/z 44. The imaging resolution employing CO2 cluster projectiles is improved by more than a factor of two. The advantage of CO2 versus Ar is also related to the increased stability which, in addition, facilitates the operation of the gas cluster ion beams (GCIB) system at lower backing pressure. Graphical Abstract ᅟ.

Superresolution Modeling of Calcium Release in the Heart

PubMed Central

Walker, Mark A.; Williams, George S.B.; Kohl, Tobias; Lehnart, Stephan E.; Jafri, M. Saleet; Greenstein, Joseph L.; Lederer, W.J.; Winslow, Raimond L.

2014-01-01

Stable calcium-induced calcium release (CICR) is critical for maintaining normal cellular contraction during cardiac excitation-contraction coupling. The fundamental element of CICR in the heart is the calcium (Ca2+) spark, which arises from a cluster of ryanodine receptors (RyR). Opening of these RyR clusters is triggered to produce a local, regenerative release of Ca2+ from the sarcoplasmic reticulum (SR). The Ca2+ leak out of the SR is an important process for cellular Ca2+ management, and it is critically influenced by spark fidelity, i.e., the probability that a spontaneous RyR opening triggers a Ca2+ spark. Here, we present a detailed, three-dimensional model of a cardiac Ca2+ release unit that incorporates diffusion, intracellular buffering systems, and stochastically gated ion channels. The model exhibits realistic Ca2+ sparks and robust Ca2+ spark termination across a wide range of geometries and conditions. Furthermore, the model captures the details of Ca2+ spark and nonspark-based SR Ca2+ leak, and it produces normal excitation-contraction coupling gain. We show that SR luminal Ca2+-dependent regulation of the RyR is not critical for spark termination, but it can explain the exponential rise in the SR Ca2+ leak-load relationship demonstrated in previous experimental work. Perturbations to subspace dimensions, which have been observed in experimental models of disease, strongly alter Ca2+ spark dynamics. In addition, we find that the structure of RyR clusters also influences Ca2+ release properties due to variations in inter-RyR coupling via local subspace Ca2+ concentration ([Ca2+]ss). These results are illustrated for RyR clusters based on super-resolution stimulated emission depletion microscopy. Finally, we present a believed-novel approach by which the spark fidelity of a RyR cluster can be predicted from structural information of the cluster using the maximum eigenvalue of its adjacency matrix. These results provide critical insights into CICR dynamics in heart, under normal and pathological conditions. PMID:25517166

Análisis de la evolución química de los cúmulos abiertos de la Galaxia a través de simulaciones dinámicas con procesos de destrucción

NASA Astrophysics Data System (ADS)

Bignone, L. A.; Pellizza, L. J.; Piatti, A. E.; Tecce, T. E.

It is well known that open clusters are excellent tracers (in time and space) of the metallicity of the Galactic disk. We analyze the history of stellar for- mation of the Galactic disk using numerical simulations of the dynamical evolution of the open cluster system. We have included the effects of clus- ter disruption caused by stellar evolution, tidal fields, and the interaction with the spiral arms. We model the present astrophysical properties of open clusters from initial hypothesis regarding their formation history. FULL TEXT IN SPANISH

K2 eclipsing binaries in the benchmark open cluster Ruprecht 147

NASA Astrophysics Data System (ADS)

Torres, Guillermo

Open clusters are ideal laboratories to study stellar astrophysics. They represent homogeneous collections of hundreds or thousands of stars that were formed together and should therefore have the same age, chemical composition, space motion, and distance. Easily measured properties for member stars such as the brightness and color can be used to infer some of the characteristics of the ensemble including the age and distance, by comparing with model isochrones in the color-magnitude diagram. In recent years space missions such as CoRoT and Kepler have enabled the detection of solar-like oscillations in some of the brighter open cluster members, which can yield asteroseismic estimates of the stellar masses and radii through simple scaling relations anchored on the Sun, and also ages under certain assumptions. Furthermore, when photometric rotation periods of stars can be measured in them, clusters will well-known ages then become essential calibrators for gyrochronology relations, which describe how stars spin down as they get older due to magnetic braking from stellar winds. These relations are important because they provide one of the few empirical ways to age-date field stars. For clusters endowed with detached, double-lined eclipsing binaries amenable to study, even stronger constraints on their properties become available that are of an entirely different nature. The absolute masses and radii of the binary components can be measured very accurately and in a model-independent way, providing an opportunity for stringent tests of stellar evolution theory. The ages that can also be obtained by comparison with models can serve to validate other age estimates mentioned above. Ruprecht 147 is remarkable in that it permits all of these types of studies at the same time. It is the oldest nearby open cluster, with an age of about 3 Gyr and a distance of only 300 pc. This makes it a favorable target for follow-up studies. The metallicity is well determined from previous spectroscopic investigations. It was observed photometrically by the K2 mission for 80 days in late 2015, enabling both asteroseismic and rotation period studies of dozens of members. What makes it truly unique, however, is that it has no less than five eclipsing binaries brighter than 13th magnitude that lend themselves to high-precision mass and radius determinations. No other open cluster has as many, let alone an old one. The brightest binary happens to be at the tip of the turnoff and provides an unusually strong constraint on age. A very special opportunity for study has thus presented itself. This is a proposal to analyze publicly available K2 photometry for the five bright eclipsing binaries discovered in Ruprecht 147, with the goal of fashioning the cluster into an important new benchmark for high-precision testing of stellar astrophysics. We will supplement the K2 light curves, processed with special detrending techniques, with ground-based spectroscopic observations yielding radial velocities for the stars. With these we will derive accurate masses, radii, and temperatures for the components of each binary using well-proven classical methodologies. The impact of the project is that the large number of binaries will allow for an unprecedented and extraordinarily strong test of stellar evolution theory over a range of masses, not available for any other open cluster. The ages we will infer are completely independent of, and of a different nature than other estimates in Ruprecht 147, coming from isochrone fitting in the colormagnitude diagram, asteroseismology of the brighter cluster members, or the use of gyrochronology relations. We will thus have a unique opportunity to cross-validate four different age-dating techniques in the same cluster. Additionally, our accurate eclipsing binary masses and radii will enable crucial tests of the asteroseismic scaling relations, which will improve their use for single stars.

A PSF-based approach to Kepler/K2 data - II. Exoplanet candidates in Praesepe (M 44)

NASA Astrophysics Data System (ADS)

Libralato, M.; Nardiello, D.; Bedin, L. R.; Borsato, L.; Granata, V.; Malavolta, L.; Piotto, G.; Ochner, P.; Cunial, A.; Nascimbeni, V.

2016-12-01

In this work, we keep pushing K2 data to a high photometric precision, close to that of the Kepler main mission, using a point-spread function (PSF)-based, neighbour-subtraction technique, which also overcome the dilution effects in crowded environments. We analyse the open cluster M 44 (NGC 2632), observed during the K2 Campaign 5, and extract light curves of stars imaged on module 14, where most of the cluster lies. We present two candidate exoplanets hosted by cluster members and five by field stars. As a by-product of our investigation, we find 1680 eclipsing binaries and variable stars, 1071 of which are new discoveries. Among them, we report the presence of a heartbeat binary star. Together with this work, we release to the community a catalogue with the variable stars and the candidate exoplanets found, as well as all our raw and detrended light curves.

Use of regionalisation approach to develop fire frequency curves for Victoria, Australia

NASA Astrophysics Data System (ADS)

Khastagir, Anirban; Jayasuriya, Niranjali; Bhuyian, Muhammed A.

2017-11-01

It is important to perform fire frequency analysis to obtain fire frequency curves (FFC) based on fire intensity at different parts of Victoria. In this paper fire frequency curves (FFCs) were derived based on forest fire danger index (FFDI). FFDI is a measure related to fire initiation, spreading speed and containment difficulty. The mean temperature (T), relative humidity (RH) and areal extent of open water (LC2) during summer months (Dec-Feb) were identified as the most important parameters for assessing the risk of occurrence of bushfire. Based on these parameters, Andrews' curve equation was applied to 40 selected meteorological stations to identify homogenous stations to form unique clusters. A methodology using peak FFDI from cluster averaged FFDIs was developed by applying Log Pearson Type III (LPIII) distribution to generate FFCs. A total of nine homogeneous clusters across Victoria were identified, and subsequently their FFC's were developed in order to estimate the regionalised fire occurrence characteristics.

Investigating Open Clusters Melotte 111 and NGC 6811

NASA Astrophysics Data System (ADS)

Gunshefski, Linda; Paust, Nathaniel E. Q.; van Belle, Gerard

2018-01-01

We present photometry and color-magnitude diagrams for the open clusters Melotte 111 (Coma Bernices) and NGC 6811. These clusters were observed with Lowell Observatory’s Discovery Channel Telescope Large Monolithic Imager in the V and I bands. The images were reduced with IRAF and photometry was performed with DAOPHOT/ALLSTAR. The resulting photometry extends many magnitudes below the main sequence turnoff. Both clusters are located nearby, (Melotte 111 d=86 pc and NGC 6811 d=1,107) and are evolutionarily young (Melotte 111, age=450 Myr and NGC 6811, age=1,000 Myr). This work marks the first step of a project to determine the cluster main sequence mass functions and examine how the mass functions evolve in young stellar populations.

WIYN open cluster study. LIX. Radial velocity membership of the evolved population of the old open cluster NGC 6791

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tofflemire, Benjamin M.; Gosnell, Natalie M.; Mathieu, Robert D.

2014-10-01

The open cluster NGC 6791 has been the focus of much recent study due to its intriguing combination of old age and high metallicity (∼8 Gyr, [Fe/H] = +0.30), as well as its location within the Kepler field. As part of the WIYN Open Cluster Study, we present precise (σ = 0.38 km s{sup –1}) radial velocities for proper motion candidate members of NGC 6791 from Platais et al. Our survey, extending down to g' ∼ 16.8, is comprised of the evolved cluster population, including blue stragglers, giants, and horizontal branch stars. Of the 280 proper-motion-selected stars above our magnitudemore » limit, 93% have at least one radial velocity measurement and 79% have three measurements over the course of at least 200 days, sufficient for secure radial-velocity-determined membership of non-velocity-variable stars. The Platais et al. proper motion catalog includes 12 anomalous horizontal branch candidates blueward of the red clump, of which we find only 4 to be cluster members. Three fall slightly blueward of the red clump and the fourth is consistent with being a blue straggler. The cleaned color-magnitude diagram shows a richly populated red giant branch and a blue straggler population. Half of the blue stragglers are in binaries. From our radial velocity measurement distribution, we find the cluster's radial velocity dispersion to be σ {sub c} = 0.62 ± 0.10 km s{sup –1}. This corresponds to a dynamical mass of ∼4600 M {sub ☉}.« less

A comprehensive photometric study of dynamically evolved small van den Bergh-Hagen open clusters

NASA Astrophysics Data System (ADS)

Piatti, Andrés E.

2016-12-01

We present results from Johnson UBV, Kron-Cousins RI and Washington CT1T2 photometries for seven van den Bergh-Hagen (vdBH) open clusters, namely, vdBH 1, 10, 31, 72, 87, 92, and 118. The high-quality, multiband photometric data sets were used to trace the cluster stellar density radial profiles and to build colour-magnitude diagrams and colour-colour diagrams from which we estimated their structural parameters and fundamental astrophysical properties. The clusters in our sample cover a wide age range, from ˜60 Myr up to 2.8 Gyr, are of relatively small size (˜1-6 pc) and are placed at distances from the Sun which vary between 1.8 and 6.3 kpc, respectively. We also estimated lower limits for the cluster present-day masses as well as half-mass relaxation times (tr). The resulting values in combination with the structural parameter values suggest that the studied clusters are in advanced stages of their internal dynamical evolution (age/tr ˜ 20-320), possibly in the typical phase of those tidally filled with mass segregation in their core regions. Compared to open clusters in the solar neighbourhood, the seven vdBH clusters are within more massive (˜80-380 M⊙), with higher concentration parameter values (c ˜ 0.75-1.15) and dynamically evolved ones.

SODIUM AND OXYGEN ABUNDANCES IN THE OPEN CLUSTER NGC 6791 FROM APOGEE H-BAND SPECTROSCOPY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cunha, Katia; Souto, Diogo; Smith, Verne V.

2015-01-10

The open cluster NGC 6791 is among the oldest, most massive, and metal-rich open clusters in the Galaxy. High-resolution H-band spectra from the Apache Point Observatory Galactic Evolution Experiment (APOGEE) of 11 red giants in NGC 6791 are analyzed for their chemical abundances of iron, oxygen, and sodium. The abundances of these three elements are found to be homogeneous (with abundance dispersions at the level of ∼0.05-0.07 dex) in these cluster red giants, which span much of the red-giant branch (T {sub eff} ∼ 3500-4600 K), and include two red clump giants. From the infrared spectra, this cluster is confirmed to be amongmore » the most metal-rich clusters in the Galaxy (([Fe/H]) = 0.34 ± 0.06) and is found to have a roughly solar value of [O/Fe] and slightly enhanced [Na/Fe]. Our non-LTE calculations for the studied Na I lines in the APOGEE spectral region (16373.86 Å and 16388.85 Å) indicate only small departures from LTE (≤0.04 dex) for the parameter range and metallicity of the studied stars. The previously reported double population of cluster members with different Na abundances is not found among the studied sample.« less

Migration in the shearing sheet and estimates for young open cluster migration

NASA Astrophysics Data System (ADS)

Quillen, Alice C.; Nolting, Eric; Minchev, Ivan; De Silva, Gayandhi; Chiappini, Cristina

2018-04-01

Using tracer particles embedded in self-gravitating shearing sheet N-body simulations, we investigate the distance in guiding centre radius that stars or star clusters can migrate in a few orbital periods. The standard deviations of guiding centre distributions and maximum migration distances depend on the Toomre or critical wavelength and the contrast in mass surface density caused by spiral structure. Comparison between our simulations and estimated guiding radii for a few young supersolar metallicity open clusters, including NGC 6583, suggests that the contrast in mass surface density in the solar neighbourhood has standard deviation (in the surface density distribution) divided by mean of about 1/4 and larger than measured using COBE data by Drimmel and Spergel. Our estimate is consistent with a standard deviation of ˜0.07 dex in the metallicities measured from high-quality spectroscopic data for 38 young open clusters (<1 Gyr) with mean galactocentric radius 7-9 kpc.

WIYN Open Cluster Study. XXXVI. Spectroscopic Binary Orbits in NGC 188

DTIC Science & Technology

2009-04-01

2000; Pleiades , Mermilliod et al. 1992; M67, Mathieu et al. 1990). Today, the advent of multi-object spectrographs permits surveys of larger stellar...open clusters (e.g., M67, Mathieu et al. (1990); Praesepe, Mermilliod et al. (1994); Pleiades , Bouvier et al. (1997); Hyades, Patience et al. (1998

Formation history of open clusters constrained by detailed asteroseismology of red giant stars observed by Kepler

NASA Astrophysics Data System (ADS)

Corsaro, Enrico; Lee, Yueh-Ning; García, Rafael A.; Hennebelle, Patrick; Mathur, Savita; Beck, Paul G.; Mathis, Stephane; Stello, Dennis; Bouvier, Jérôme

2017-10-01

Stars originate by the gravitational collapse of a turbulent molecular cloud of a diffuse medium, and are often observed to form clusters. Stellar clusters therefore play an important role in our understanding of star formation and of the dynamical processes at play. However, investigating the cluster formation is diffcult because the density of the molecular cloud undergoes a change of many orders of magnitude. Hierarchical-step approaches to decompose the problem into different stages are therefore required, as well as reliable assumptions on the initial conditions in the clouds. We report for the first time the use of the full potential of NASA Kepler asteroseismic observations coupled with 3D numerical simulations, to put strong constraints on the early formation stages of open clusters. Thanks to a Bayesian peak bagging analysis of about 50 red giant members of NGC 6791 and NGC 6819, the two most populated open clusters observed in the nominal Kepler mission, we derive a complete set of detailed oscillation mode properties for each star, with thousands of oscillation modes characterized. We therefore show how these asteroseismic properties lead us to a discovery about the rotation history of stellar clusters. Finally, our observational findings will be compared with hydrodynamical simulations for stellar cluster formation to constrain the physical processes of turbulence, rotation, and magnetic fields that are in action during the collapse of the progenitor cloud into a proto-cluster.

Cluster Stability Estimation Based on a Minimal Spanning Trees Approach

NASA Astrophysics Data System (ADS)

Volkovich, Zeev (Vladimir); Barzily, Zeev; Weber, Gerhard-Wilhelm; Toledano-Kitai, Dvora

2009-08-01

Among the areas of data and text mining which are employed today in science, economy and technology, clustering theory serves as a preprocessing step in the data analyzing. However, there are many open questions still waiting for a theoretical and practical treatment, e.g., the problem of determining the true number of clusters has not been satisfactorily solved. In the current paper, this problem is addressed by the cluster stability approach. For several possible numbers of clusters we estimate the stability of partitions obtained from clustering of samples. Partitions are considered consistent if their clusters are stable. Clusters validity is measured as the total number of edges, in the clusters' minimal spanning trees, connecting points from different samples. Actually, we use the Friedman and Rafsky two sample test statistic. The homogeneity hypothesis, of well mingled samples within the clusters, leads to asymptotic normal distribution of the considered statistic. Resting upon this fact, the standard score of the mentioned edges quantity is set, and the partition quality is represented by the worst cluster corresponding to the minimal standard score value. It is natural to expect that the true number of clusters can be characterized by the empirical distribution having the shortest left tail. The proposed methodology sequentially creates the described value distribution and estimates its left-asymmetry. Numerical experiments, presented in the paper, demonstrate the ability of the approach to detect the true number of clusters.

Integrating Xgrid into the HENP distributed computing model

NASA Astrophysics Data System (ADS)

Hajdu, L.; Kocoloski, A.; Lauret, J.; Miller, M.

2008-07-01

Modern Macintosh computers feature Xgrid, a distributed computing architecture built directly into Apple's OS X operating system. While the approach is radically different from those generally expected by the Unix based Grid infrastructures (Open Science Grid, TeraGrid, EGEE), opportunistic computing on Xgrid is nonetheless a tempting and novel way to assemble a computing cluster with a minimum of additional configuration. In fact, it requires only the default operating system and authentication to a central controller from each node. OS X also implements arbitrarily extensible metadata, allowing an instantly updated file catalog to be stored as part of the filesystem itself. The low barrier to entry allows an Xgrid cluster to grow quickly and organically. This paper and presentation will detail the steps that can be taken to make such a cluster a viable resource for HENP research computing. We will further show how to provide to users a unified job submission framework by integrating Xgrid through the STAR Unified Meta-Scheduler (SUMS), making tasks and jobs submission effortlessly at reach for those users already using the tool for traditional Grid or local cluster job submission. We will discuss additional steps that can be taken to make an Xgrid cluster a full partner in grid computing initiatives, focusing on Open Science Grid integration. MIT's Xgrid system currently supports the work of multiple research groups in the Laboratory for Nuclear Science, and has become an important tool for generating simulations and conducting data analyses at the Massachusetts Institute of Technology.

Massive open star clusters using the VVV survey. I. Presentation of the data and description of the approach

NASA Astrophysics Data System (ADS)

Chené, A.-N.; Borissova, J.; Clarke, J. R. A.; Bonatto, C.; Majaess, D. J.; Moni Bidin, C.; Sale, S. E.; Mauro, F.; Kurtev, R.; Baume, G.; Feinstein, C.; Ivanov, V. D.; Geisler, D.; Catelan, M.; Minniti, D.; Lucas, P.; de Grijs, R.; Kumar, M. S. N.

2012-09-01

Context. The ESO Public Survey "VISTA Variables in the Vía Láctea" (VVV) provides deep multi-epoch infrared observations for unprecedented 562 sq. degrees of the Galactic bulge, and adjacent regions of the disk. Aims: The VVV observations will foster the construction of a sample of Galactic star clusters with reliable and homogeneously derived physical parameters (e.g., age, distance, and mass, etc.). In this first paper in a series, the methodology employed to establish cluster parameters for the envisioned database are elaborated upon by analysing four known young open clusters: Danks 1, Danks 2, RCW 79, and DBS 132. The analysis offers a first glimpse of the information that can be gleaned from the VVV observations for clusters in the final database. Methods: Wide-field, deep JHKs VVV observations, combined with new infrared spectroscopy, are employed to constrain fundamental parameters for a subset of clusters. Results: Results are inferred from VVV near-infrared photometry and numerous low resolution spectra (typically more than 10 per cluster). The high quality of the spectra and the deep wide-field VVV photometry enables us to precisely and independently determine the characteristics of the clusters studied, which we compare to previous determinations. An anomalous reddening law in the direction of the Danks clusters is found, specifically E(J - H)/E(H - Ks) = 2.20 ± 0.06, which exceeds published values for the inner Galaxy. The G305 star forming complex, which includes the Danks clusters, lies beyond the Sagittarius-Carina spiral arm and occupies the Centaurus arm. Finally, the first deep infrared colour-magnitude diagram of RCW 79 is presented, which reveals a sizeable pre-main sequence population. A list of candidate variable stars in G305 region is reported. Conclusions: This study demonstrates the strength of the dataset and methodology employed, and constitutes the first step of a broader study which shall include reliable parameters for a sizeable number of poorly characterised and/or newly discovered clusters. Based on observations made with NTT telescope at the La Silla Observatory, ESO, under programme ID 087.D-0490A, and with the Clay telescope at the Las Campanas Observatory under programme CN2011A-086. Also based on data from the VVV survey observed under program ID 172.B-2002.Tables 1, 5 and 6 are available in electronic form at http://www.aanda.org

First estimates of the fundamental parameters of the relatively bright Galactic open cluster NGC 5288

NASA Astrophysics Data System (ADS)

Piatti, Andrés E.; Clariá, Juan J.; Ahumada, Andrea V.

2006-04-01

In this paper we present charge-coupled device (CCD) images in the Johnson B and V and Kron-Cousins I passbands for the previously unstudied open cluster NGC 5288. The sample consists of 15688 stars reaching down to V~ 20.5. The cluster appears to have a relatively small but conspicuous nucleus and a low-density extended coronal region. Star counts carried out in 25 × 25 pixel2 boxes distributed throughout the whole observed field allowed us to estimate the angular core and corona radii as ~1.3 and 6.3arcmin, respectively. Our analysis suggests that NGC 5288 is moderately young and probably more metal-rich than the Sun. Adopting the theoretical metal content Z= 0.040, which provides the best global fit, we derive an age of 130+40-30Myr. Simultaneously, we have obtained colour excesses E(B-V) = 0.75 and E(V-I) = 0.95 and an apparent distance modulus V-MV= 14.00. The law of interstellar extinction in the cluster direction is found to be normal. NGC 5288 is located at 2.1 +/- 0.3kpc from the Sun beyond the Carina spiral feature and ~7.4kpc from the Galactic Centre. The cluster metallicity seems to be compatible with the cluster position in the Galaxy, given the recognized radial abundance gradient in the disc. For the first time, in this paper we determine the basic parameters for the open cluster NGC 5381, situated in the same direction as NGC 5288. This determination was reached by using CCD VI data published almost a decade ago by Pietrzyński et al. (1997) for NGC 5381. The properties of some open clusters aligned along the line of sight of NGC 5288 are examined. The properties of clusters of similar ages to NGC 5288 are also looked into. Evidence is presented that these did not form mainly along the spiral arms but rather in the thin Galactic disc (Z~+/-100pc).

Physics Instructional Resource Usage by High-, Medium-, and Low-Skilled MOOC Students

NASA Astrophysics Data System (ADS)

Balint, Trevor A.; Teodorescu, Raluca; Colvin, Kimberly; Choi, Youn-Jeng; Pritchard, David

2017-04-01

In this paper we examine how different types of participants in a physics Massive Open Online Course (MOOC) tend to use the existing course resources. We use data from the 2013 offering of the Massive Open Online Course 8.MReVx designed by the RELATE (REsearch in Learning Assessing and Tutoring Effectively) Group at the Massachusetts Institute of Technology and offered on the edX platform. We propose six measures of student performance in a course, and, based on these measures, we divide the student population into clusters and analyze the resource usage of the students from each cluster. This course contains a wide variety of physics problems targeting various levels of thinking. Our analysis focuses on 1080 participants (out of 16,787 enrolled in the course) who attempted more than 50% of available problems, as this is an indicator of students who participated actively in the entire course.

Euler-euler anisotropic gaussian mesoscale simulation of homogeneous cluster-induced gas-particle turbulence

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kong, Bo; Fox, Rodney O.; Feng, Heng

An Euler–Euler anisotropic Gaussian approach (EE-AG) for simulating gas–particle flows, in which particle velocities are assumed to follow a multivariate anisotropic Gaussian distribution, is used to perform mesoscale simulations of homogeneous cluster-induced turbulence (CIT). A three-dimensional Gauss–Hermite quadrature formulation is used to calculate the kinetic flux for 10 velocity moments in a finite-volume framework. The particle-phase volume-fraction and momentum equations are coupled with the Eulerian solver for the gas phase. This approach is implemented in an open-source CFD package, OpenFOAM, and detailed simulation results are compared with previous Euler–Lagrange simulations in a domain size study of CIT. Here, these resultsmore » demonstrate that the proposed EE-AG methodology is able to produce comparable results to EL simulations, and this moment-based methodology can be used to perform accurate mesoscale simulations of dilute gas–particle flows.« less

Euler-euler anisotropic gaussian mesoscale simulation of homogeneous cluster-induced gas-particle turbulence

DOE PAGES

Kong, Bo; Fox, Rodney O.; Feng, Heng; ...

2017-02-16

An Euler–Euler anisotropic Gaussian approach (EE-AG) for simulating gas–particle flows, in which particle velocities are assumed to follow a multivariate anisotropic Gaussian distribution, is used to perform mesoscale simulations of homogeneous cluster-induced turbulence (CIT). A three-dimensional Gauss–Hermite quadrature formulation is used to calculate the kinetic flux for 10 velocity moments in a finite-volume framework. The particle-phase volume-fraction and momentum equations are coupled with the Eulerian solver for the gas phase. This approach is implemented in an open-source CFD package, OpenFOAM, and detailed simulation results are compared with previous Euler–Lagrange simulations in a domain size study of CIT. Here, these resultsmore » demonstrate that the proposed EE-AG methodology is able to produce comparable results to EL simulations, and this moment-based methodology can be used to perform accurate mesoscale simulations of dilute gas–particle flows.« less

Be Stars in the Open Cluster NGC 6830

NASA Astrophysics Data System (ADS)

Yu, Po-Chieh; Lin, Chien-Cheng; Lin, Hsing-Wen; Lee, Chien-De; Konidaris, Nick; Ngeow, Chow-Choong; Ip, Wing-Huen; Chen, Wen-Ping; Chen, Hui-Chen; Malkan, Matthew A.; Chang, Chan-Kao; Laher, Russ; Huang, Li-Ching; Cheng, Yu-Chi; Edelson, Rick; Ritter, Andreas; Quimby, Robert; Ben-Ami, Sagi; Ofek, Eran. O.; Surace, Jason; Kulkarni, Shrinivas R.

2016-05-01

We report the discovery of two new Be stars, and re-identify one known Be star in the open cluster NGC 6830. Eleven Hα emitters were discovered using the Hα imaging photometry of the Palomar Transient Factory Survey. Stellar membership of the candidates was verified with photometric and kinematic information using 2MASS data and proper motions. The spectroscopic confirmation was carried out by using the Shane 3 m telescope at the Lick observatory. Based on their spectral types, three Hα emitters were confirmed as Be stars with Hα equivalent widths greater than -10 Å. Two objects were also observed by the new spectrograph spectral energy distribution-machine (SED-machine) on the Palomar 60-inch Telescope. The SED-machine results show strong Hα emission lines, which are consistent with the results of the Lick observations. The high efficiency of the SED-machine can provide rapid observations for Be stars in a comprehensive survey in the future.

Multimode delta Scuti stars in the open cluster NGC 7062

NASA Astrophysics Data System (ADS)

Freyhammer, L. M.; Arentoft, T.; Sterken, C.

2001-03-01

The central field of NGC 7062 was observed intensively with the main goal of finding delta Scuti stars suitable for use in asteroseismological tests of stellar structure and evolution theory. BV time series photometry was obtained for this northern open cluster, which has a large population of stars inside the delta Scuti instability strip, making it a probable host of several such variables. We report findings of 15 pulsating stars, including at least 13 delta Scuti stars. Ten variables oscillate in two or more frequencies. Only one of these variables was known before, for which we detected 9 frequencies. Five probable variables are mentioned, and period analysis is given for all 20 stars. Based on observations obtained at the Nordic Optical Telescope, operated on the island of La Palma jointly by Denmark, Finland, Iceland, Norway, and Sweden, in the Spanish Observatorio del Roque de los Muchachos of the Instituto de Astrofisíca de Canarias.

Comparing the Performance of NoSQL Approaches for Managing Archetype-Based Electronic Health Record Data

PubMed Central

Freire, Sergio Miranda; Teodoro, Douglas; Wei-Kleiner, Fang; Sundvall, Erik; Karlsson, Daniel; Lambrix, Patrick

2016-01-01

This study provides an experimental performance evaluation on population-based queries of NoSQL databases storing archetype-based Electronic Health Record (EHR) data. There are few published studies regarding the performance of persistence mechanisms for systems that use multilevel modelling approaches, especially when the focus is on population-based queries. A healthcare dataset with 4.2 million records stored in a relational database (MySQL) was used to generate XML and JSON documents based on the openEHR reference model. Six datasets with different sizes were created from these documents and imported into three single machine XML databases (BaseX, eXistdb and Berkeley DB XML) and into a distributed NoSQL database system based on the MapReduce approach, Couchbase, deployed in different cluster configurations of 1, 2, 4, 8 and 12 machines. Population-based queries were submitted to those databases and to the original relational database. Database size and query response times are presented. The XML databases were considerably slower and required much more space than Couchbase. Overall, Couchbase had better response times than MySQL, especially for larger datasets. However, Couchbase requires indexing for each differently formulated query and the indexing time increases with the size of the datasets. The performances of the clusters with 2, 4, 8 and 12 nodes were not better than the single node cluster in relation to the query response time, but the indexing time was reduced proportionally to the number of nodes. The tested XML databases had acceptable performance for openEHR-based data in some querying use cases and small datasets, but were generally much slower than Couchbase. Couchbase also outperformed the response times of the relational database, but required more disk space and had a much longer indexing time. Systems like Couchbase are thus interesting research targets for scalable storage and querying of archetype-based EHR data when population-based use cases are of interest. PMID:26958859

Comparing the Performance of NoSQL Approaches for Managing Archetype-Based Electronic Health Record Data.

PubMed

Freire, Sergio Miranda; Teodoro, Douglas; Wei-Kleiner, Fang; Sundvall, Erik; Karlsson, Daniel; Lambrix, Patrick

2016-01-01

This study provides an experimental performance evaluation on population-based queries of NoSQL databases storing archetype-based Electronic Health Record (EHR) data. There are few published studies regarding the performance of persistence mechanisms for systems that use multilevel modelling approaches, especially when the focus is on population-based queries. A healthcare dataset with 4.2 million records stored in a relational database (MySQL) was used to generate XML and JSON documents based on the openEHR reference model. Six datasets with different sizes were created from these documents and imported into three single machine XML databases (BaseX, eXistdb and Berkeley DB XML) and into a distributed NoSQL database system based on the MapReduce approach, Couchbase, deployed in different cluster configurations of 1, 2, 4, 8 and 12 machines. Population-based queries were submitted to those databases and to the original relational database. Database size and query response times are presented. The XML databases were considerably slower and required much more space than Couchbase. Overall, Couchbase had better response times than MySQL, especially for larger datasets. However, Couchbase requires indexing for each differently formulated query and the indexing time increases with the size of the datasets. The performances of the clusters with 2, 4, 8 and 12 nodes were not better than the single node cluster in relation to the query response time, but the indexing time was reduced proportionally to the number of nodes. The tested XML databases had acceptable performance for openEHR-based data in some querying use cases and small datasets, but were generally much slower than Couchbase. Couchbase also outperformed the response times of the relational database, but required more disk space and had a much longer indexing time. Systems like Couchbase are thus interesting research targets for scalable storage and querying of archetype-based EHR data when population-based use cases are of interest.

Characterization of electrically-active defects in ultraviolet light-emitting diodes with laser-based failure analysis techniques

DOE Office of Scientific and Technical Information (OSTI.GOV)

Miller, Mary A.; Tangyunyong, Paiboon; Cole, Edward I.

2016-01-14

Laser-based failure analysis techniques demonstrate the ability to quickly and non-intrusively screen deep ultraviolet light-emitting diodes (LEDs) for electrically-active defects. In particular, two laser-based techniques, light-induced voltage alteration and thermally-induced voltage alteration, generate applied voltage maps (AVMs) that provide information on electrically-active defect behavior including turn-on bias, density, and spatial location. Here, multiple commercial LEDs were examined and found to have dark defect signals in the AVM indicating a site of reduced resistance or leakage through the diode. The existence of the dark defect signals in the AVM correlates strongly with an increased forward-bias leakage current. This increased leakage ismore » not present in devices without AVM signals. Transmission electron microscopy analysis of a dark defect signal site revealed a dislocation cluster through the pn junction. The cluster included an open core dislocation. Even though LEDs with few dark AVM defect signals did not correlate strongly with power loss, direct association between increased open core dislocation densities and reduced LED device performance has been presented elsewhere [M. W. Moseley et al., J. Appl. Phys. 117, 095301 (2015)].« less

Characterization of electrically-active defects in ultraviolet light-emitting diodes with laser-based failure analysis techniques

DOE PAGES

Miller, Mary A.; Tangyunyong, Paiboon; Edward I. Cole, Jr.

2016-01-12

In this study, laser-based failure analysis techniques demonstrate the ability to quickly and non-intrusively screen deep ultraviolet light-emitting diodes(LEDs) for electrically-active defects. In particular, two laser-based techniques, light-induced voltage alteration and thermally-induced voltage alteration, generate applied voltage maps (AVMs) that provide information on electrically-active defect behavior including turn-on bias, density, and spatial location. Here, multiple commercial LEDs were examined and found to have dark defect signals in the AVM indicating a site of reduced resistance or leakage through the diode. The existence of the dark defect signals in the AVM correlates strongly with an increased forward-bias leakage current. This increasedmore » leakage is not present in devices without AVM signals. Transmission electron microscopyanalysis of a dark defect signal site revealed a dislocation cluster through the pn junction. The cluster included an open core dislocation. Even though LEDs with few dark AVM defect signals did not correlate strongly with power loss, direct association between increased open core dislocation densities and reduced LED device performance has been presented elsewhere [M. W. Moseley et al., J. Appl. Phys. 117, 095301 (2015)].« less

Electrician Cluster, STEP Training Plan. Skills Training and Education Program.

ERIC Educational Resources Information Center

Alabama State Dept. of Postsecondary Education, Montgomery.

This guide is a training plan for the electrical skills cluster of the Skills Training and Education Program (STEP), an open-entry, open-exit program funded by the Job Training Partnership Act (JTPA). In the STEP training plan, each task has its own lesson plan guide. This manual contains the following information: definitions, instructions for…

Clerical Cluster, STEP Training Plan. Skills Training and Education Program.

ERIC Educational Resources Information Center

Alabama State Dept. of Postsecondary Education, Montgomery.

This guide is a training plan for the clerical skills cluster of the Skills Training and Education Program (STEP), an open-entry, open-exit program funded by the Job Training Partnership Act (JTPA). In the STEP training plan, each task has its own lesson plan guide. This manual contains the following information: definitions, instructions for…

A Multisite Cluster Randomized Field Trial of Open Court Reading

ERIC Educational Resources Information Center

Borman, Geoffrey D.; Dowling, N. Maritza; Schneck, Carrie

2008-01-01

In this article, the authors report achievement outcomes of a multisite cluster randomized field trial of Open Court Reading 2005 (OCR), a K-6 literacy curriculum published by SRA/McGraw-Hill. The participants are 49 first-grade through fifth-grade classrooms from predominantly minority and poor contexts across the nation. Blocking by grade level…

Repair Rate of Clustered Abasic DNA Lesions by Human Endonuclease: Molecular Bases of Sequence Specificity.

PubMed

Gattuso, Hugo; Durand, Elodie; Bignon, Emmanuelle; Morell, Christophe; Georgakilas, Alexandros G; Dumont, Elise; Chipot, Christophe; Dehez, François; Monari, Antonio

2016-10-06

In the present contribution, the interaction between damaged DNA and repair enzymes is examined by means of molecular dynamics simulations. More specifically, we consider clustered abasic DNA lesions processed by the primary human apurinic/apyrimidinic (AP) endonuclease, APE1. Our results show that, in stark contrast with the corresponding bacterial endonucleases, human APE1 imposes strong geometrical constraints on the DNA duplex. As a consequence, the level of recognition and, hence, the repair rate is higher. Important features that guide the DNA/protein interactions are the presence of an extended positively charged region and of a molecular tweezers that strongly constrains DNA. Our results are on very good agreement with the experimentally determined repair rate of clustered abasic lesions. The lack of repair for one particular arrangement of the two abasic sites is also explained considering the peculiar destabilizing interaction between the recognition region and the second lesion, resulting in a partial opening of the molecular tweezers and, thus, a less stable complex. This contribution cogently establishes the molecular bases for the recognition and repair of clustered DNA lesions by means of human endonucleases.

Benchmark CCSD(T) and DFT study of binding energies in Be7 - 12: in search of reliable DFT functional for beryllium clusters

NASA Astrophysics Data System (ADS)

Labanc, Daniel; Šulka, Martin; Pitoňák, Michal; Černušák, Ivan; Urban, Miroslav; Neogrády, Pavel

2018-05-01

We present a computational study of the stability of small homonuclear beryllium clusters Be7 - 12 in singlet electronic states. Our predictions are based on highly correlated CCSD(T) coupled cluster calculations. Basis set convergence towards the complete basis set limit as well as the role of the 1s core electron correlation are carefully examined. Our CCSD(T) data for binding energies of Be7 - 12 clusters serve as a benchmark for performance assessment of several density functional theory (DFT) methods frequently used in beryllium cluster chemistry. We observe that, from Be10 clusters on, the deviation from CCSD(T) benchmarks is stable with respect to size, and fluctuating within 0.02 eV error bar for most examined functionals. This opens up the possibility of scaling the DFT binding energies for large Be clusters using CCSD(T) benchmark values for smaller clusters. We also tried to find analogies between the performance of DFT functionals for Be clusters and for the valence-isoelectronic Mg clusters investigated recently in Truhlar's group. We conclude that it is difficult to find DFT functionals that perform reasonably well for both beryllium and magnesium clusters. Out of 12 functionals examined, only the M06-2X functional gives reasonably accurate and balanced binding energies for both Be and Mg clusters.

Efficient similarity-based data clustering by optimal object to cluster reallocation.

PubMed

Rossignol, Mathias; Lagrange, Mathieu; Cont, Arshia

2018-01-01

We present an iterative flat hard clustering algorithm designed to operate on arbitrary similarity matrices, with the only constraint that these matrices be symmetrical. Although functionally very close to kernel k-means, our proposal performs a maximization of average intra-class similarity, instead of a squared distance minimization, in order to remain closer to the semantics of similarities. We show that this approach permits the relaxing of some conditions on usable affinity matrices like semi-positiveness, as well as opening possibilities for computational optimization required for large datasets. Systematic evaluation on a variety of data sets shows that compared with kernel k-means and the spectral clustering methods, the proposed approach gives equivalent or better performance, while running much faster. Most notably, it significantly reduces memory access, which makes it a good choice for large data collections. Material enabling the reproducibility of the results is made available online.

NGC 6705 a young α-enhanced open cluster from OCCASO data

NASA Astrophysics Data System (ADS)

Casamiquela, L.; Carrera, R.; Balaguer-Núñez, L.; Jordi, C.; Chiappini, C.; Anders, F.; Antoja, T.; Miret-Roig, N.; Romero-Gomez, M.; Blanco-Cuaresma, S.; Pancino, E.; Aguado, D. S.; del Pino, A.; Diaz-Perez, L.; Gallart, C.

2018-03-01

Context. The stellar [α/Fe] abundance is sometimes used as a proxy for stellar age, following standard chemical evolution models for the Galaxy, as seen by different observational results. Aim. In this work, we aim to show that the open cluster NGC 6705/M 11 has a significant α-enhancement [α/Fe] > 0.1 dex, despite its young age ( 300 Myr), challenging the current paradigm. Methods: We used high resolution (R > 65 000) high signal-to-noise ( 70) spectra of eight red clump stars, acquired within the OCCASO survey. We determined very accurate chemical abundances of several α elements, using an equivalent width methodology (Si, Ca and Ti), and spectral synthesis fits (Mg and O). Results: We obtain [Si/Fe] = 0.13 ± 0.05, [Mg/Fe] = 0.14 ± 0.07, [O/Fe] = 0.17 ± 0.07, [Ca/Fe] = 0.06 ± 0.05, and [Ti/Fe] = 0.03 ± 0.03. Our results place these clusters within the group of young [α/Fe]-enhanced field stars recently found by several authors in the literature. The ages of our stars have an uncertainty of around 50 Myr, much more precise than for field stars. By integrating the cluster's orbit in several non-axisymmetric Galactic potentials, we establish the M 11's most likely birth radius as lying between 6.8-7.5 kpc from the Galactic centre, not far from its current position. Conclusions: With the robust open cluster age scale, our results prove that a moderate [α/Fe]-enhancement is no guarantee for a star to be old, and that not all α-enhanced stars can be explained with an evolved blue straggler scenario. Based on our orbit calculations, we further argue against a Galactic bar origin of M 11. Full Table 2 is only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/610/A66

Classification and discrimination of pediatric patients undergoing open heart surgery with and without methylprednisolone treatment by cytomics

NASA Astrophysics Data System (ADS)

Bocsi, Jozsef; Mittag, Anja; Pierzchalski, Arkadiusz; Osmancik, Pavel; Dähnert, Ingo; Tárnok, Attila

2011-02-01

Introduction: Methylprednisolone (MP) is frequently preoperatively administered in children undergoing open heart surgery. The aim of this medication is to inhibit overshooting immune responses. Earlier studies demonstrated cellular and humoral immunological changes in pediatric patients undergoing heart surgeries with and without MP administration. Here in a retrospective study we investigated the modulation of the cellular immune response by MP. The aim was to identify suitable parameters characterizing MP effects by cluster analysis. Methods: Blood samples were analysed from two aged matched groups with surgical correction of septum defects. Group without MP treatment consisted of 10 patients; MP was administered on 21 patients (median dose: 11mg/kg) before cardiopulmonary bypass (CPB). EDTA anticoagulated blood was obtained 24 h preoperatively, after anesthesia, at CPB begin and end (CPB2), 4h, 24h, 48h after surgery, at discharge and at out-patient followup (8.2; 3.3-12.2 month after surgery; median and IQR). Flow cytometry showed the biggest MP relevant changes at CPB2 and 4h postoperatively. They were used for clustering analysis. Classification was made by discriminant analysis and cluster analysis by means of Genes@work software. Results & conclusion: 146 parameters were obtained from analysis. Cross-validation revealed several parameters being able to discriminate between MP groups and to identify immune modulation. MP administration resulted in a delayed activation of monocytes, increased ratio of neutrophils, reduced T-lymphocytes counts. Cluster analysis demonstrated that classification of patients is possible based on the identified cytomics parameters. Further investigation of these parameters might help to understand the MP effects in pediatric open heart surgery.

Time-Resolved Surveys of Stellar Clusters

NASA Astrophysics Data System (ADS)

Eyer, Laurent; Eggenberger, Patrick; Greco, Claudia; Saesen, Sophie; Anderson, Richard I.; Mowlavi, Nami

We describe the information that can be gained when a survey is done multi-epoch, and its particular impact in open cluster research. We first explain the irreplaceable information that multi-epoch observations are giving within astrometry, photometry and spectroscopy. Then we give three examples of results on open clusters from multi-epoch surveys, namely, the distance to the Pleiades, the angular momentum evolution of low mass stars and asteroseismology. Finally we mention several very large surveys, which are ongoing or planned for the future, Gaia, JASMINE, LSST, and VVV.

Isochrone Fittings for the Open Star Clusters NGC 3680 and Melotte 66

NASA Astrophysics Data System (ADS)

Guillemaud, Nikolas; Frinchaboy, P. M.; Thompson, B. A.

2013-01-01

I will be displaying the results from isochrone fittings on two open star clusters. The stellar evolution models used to generate the isochrones are from Dartmouth (Dotter et al. 2007) and Padova (Mango et al. 2008). Both of the models were applied to two star clusters: NGC 3680 and Melotte 66. The analysis is performed by utilizing infrared observations from the CPAPIR instrument; which is operated in conjunction with CTIO’s 1.5m telescope. This research was made possible by the NSF’s REU grant; award number 0851558.

Dynamic provisioning of a HEP computing infrastructure on a shared hybrid HPC system

NASA Astrophysics Data System (ADS)

Meier, Konrad; Fleig, Georg; Hauth, Thomas; Janczyk, Michael; Quast, Günter; von Suchodoletz, Dirk; Wiebelt, Bernd

2016-10-01

Experiments in high-energy physics (HEP) rely on elaborate hardware, software and computing systems to sustain the high data rates necessary to study rare physics processes. The Institut fr Experimentelle Kernphysik (EKP) at KIT is a member of the CMS and Belle II experiments, located at the LHC and the Super-KEKB accelerators, respectively. These detectors share the requirement, that enormous amounts of measurement data must be processed and analyzed and a comparable amount of simulated events is required to compare experimental results with theoretical predictions. Classical HEP computing centers are dedicated sites which support multiple experiments and have the required software pre-installed. Nowadays, funding agencies encourage research groups to participate in shared HPC cluster models, where scientist from different domains use the same hardware to increase synergies. This shared usage proves to be challenging for HEP groups, due to their specialized software setup which includes a custom OS (often Scientific Linux), libraries and applications. To overcome this hurdle, the EKP and data center team of the University of Freiburg have developed a system to enable the HEP use case on a shared HPC cluster. To achieve this, an OpenStack-based virtualization layer is installed on top of a bare-metal cluster. While other user groups can run their batch jobs via the Moab workload manager directly on bare-metal, HEP users can request virtual machines with a specialized machine image which contains a dedicated operating system and software stack. In contrast to similar installations, in this hybrid setup, no static partitioning of the cluster into a physical and virtualized segment is required. As a unique feature, the placement of the virtual machine on the cluster nodes is scheduled by Moab and the job lifetime is coupled to the lifetime of the virtual machine. This allows for a seamless integration with the jobs sent by other user groups and honors the fairshare policies of the cluster. The developed thin integration layer between OpenStack and Moab can be adapted to other batch servers and virtualization systems, making the concept also applicable for other cluster operators. This contribution will report on the concept and implementation of an OpenStack-virtualized cluster used for HEP workflows. While the full cluster will be installed in spring 2016, a test-bed setup with 800 cores has been used to study the overall system performance and dedicated HEP jobs were run in a virtualized environment over many weeks. Furthermore, the dynamic integration of the virtualized worker nodes, depending on the workload at the institute's computing system, will be described.

Polarimetry of an intermediate-age open cluster: NGC 5617

NASA Astrophysics Data System (ADS)

Orsatti, A. M.; Feinstein, C.; Vergne, M. M.; Martínez, R. E.; Vega, E. I.

2010-04-01

Aims: We present polarimetric observations in the UBVRI bands of 72 stars located in the direction of the medium age open cluster NGC 5617. Our intention is to use polarimetry as a tool in membership identification, by building on previous investigations intended mainly to determine the cluster's general characteristics rather than provide membership suitable for studies such as stellar content and metallicity, as well as study the characteristics of the dust lying between the Sun and the cluster. Methods: The obsevations were carried out using the five-channel photopolarimeter of the Torino Astronomical Observatory attached to the 2.15 m telescope at the Complejo Astronómico El Leoncito (CASLEO; Argentina). Results: We are able to add 32 stars to the list of members of NGC 5617, and review the situation for others listed in the literature. In particular, we find that five blue straggler stars in the region of the cluster are located behind the same dust as the member stars are and we confirm the membership of two red giants. The proposed polarimetric memberships are compared with those derived by photometric and kinematical methods, with excellent results. Among the observed stars, we identify 10 with intrinsic polarization in their light. NGC 5617 can be polarimetrically characterized with Pmax = 4.40 % and θv = 73.1 deg. The spread in polarization values for the stars observed in the direction of the cluster seems to be caused by the uneven distribution of dust in front of the cluster's face. Finally, we find that in the direction of the cluster, the interstellar medium is apparently free of dust, from the Sun's position up to the Carina-Sagittarius arm, where NGC 5617 seems to be located at its farthest border. Based on observations obtained at Complejo Astronómico El Leoncito, operated under agreement between the Consejo Nacional de Investigaciones Científicas y Técnicas de la República Argentina and the Universities of La Plata, Córdoba, and San Juan.

fast_protein_cluster: parallel and optimized clustering of large-scale protein modeling data.

PubMed

Hung, Ling-Hong; Samudrala, Ram

2014-06-15

fast_protein_cluster is a fast, parallel and memory efficient package used to cluster 60 000 sets of protein models (with up to 550 000 models per set) generated by the Nutritious Rice for the World project. fast_protein_cluster is an optimized and extensible toolkit that supports Root Mean Square Deviation after optimal superposition (RMSD) and Template Modeling score (TM-score) as metrics. RMSD calculations using a laptop CPU are 60× faster than qcprot and 3× faster than current graphics processing unit (GPU) implementations. New GPU code further increases the speed of RMSD and TM-score calculations. fast_protein_cluster provides novel k-means and hierarchical clustering methods that are up to 250× and 2000× faster, respectively, than Clusco, and identify significantly more accurate models than Spicker and Clusco. fast_protein_cluster is written in C++ using OpenMP for multi-threading support. Custom streaming Single Instruction Multiple Data (SIMD) extensions and advanced vector extension intrinsics code accelerate CPU calculations, and OpenCL kernels support AMD and Nvidia GPUs. fast_protein_cluster is available under the M.I.T. license. (http://software.compbio.washington.edu/fast_protein_cluster) © The Author 2014. Published by Oxford University Press.

Genetics Home Reference: myopathy with deficiency of iron-sulfur cluster assembly enzyme

MedlinePlus

... Myopathy with deficiency of iron-sulfur cluster assembly enzyme Printable PDF Open All Close All Enable Javascript ... Myopathy with deficiency of iron-sulfur cluster assembly enzyme is an inherited disorder that primarily affects muscles ...

A New Globular Cluster in the Area of VVVX

NASA Astrophysics Data System (ADS)

Bica, E.; Minniti, D.; Bonatto, C.; Hempel, M.

2018-06-01

We communicate the discovery of a new globular cluster in the Galaxy that was first detected on WISE/2MASS images and is now confirmed with VVVX photometry. It is a Palomar-like cluster projected at ℓ = 359.15°, b = 5.73°, and may be related to the bulge. We derive an absolute magnitude of MV ≈ -3.3, thus being an underluminous globular cluster. Our analyses provide a reddening of E(B - V) = 1.08 ± 0.18 and a distance to the Sun d⊙ = 6.3 ± 1 kpc, which implies a current position in the bulge volume. The estimated metallicity is [Fe/H] = -1.5 ± 0.25. It adds to the recently discovered faint globular cluster (Minniti 22) and candidates found with VVV, building up expectations of ≈50 globular clusters yet to be discovered in the bulge. We also communicate the discovery of an old open cluster in the same VVVX tile as the globular cluster. The VVVX photometry provided E(B - V) = 0.62 ± 0.1, d⊙ = 7.6 ± 1 kpc, and an age of 1.5 ± 0.3 Gyr. With a height from the plane of ≈0.8 kpc, it adds to nine Gyr-class clusters recently discovered within 0.8 ⩽ Z ⩽ 2.2 kpc, as recently probed in the single VVV tile b201. We suggest that these findings may be disclosing the thick disk at the bulge, which so far has no open cluster counterpart, and hardly any individual star. Thus, the VVV and VVVX surveys are opening new windows for follow-up studies, to employ present and future generations of large aperture telescopes.

Research and Project Activities in Astrophysics

NASA Technical Reports Server (NTRS)

Harnden, F. Rick, Jr.; Kaluzienski, Louis J. (Technical Monitor)

2002-01-01

In collaboration with G Micela, S. Sciortino, and others at the Osservatorio Astronomico di Palermo G. S. Valens, we conducted studies of X-ray emission from normal stars, primarily via observations of several open star clusters and star forming regions (viz. the Pleiades, NBC 2516, NBC 2264, and the Orion Nebula Cluster). Our work was based on combined data from several X-ray observatories, Einstein, ROSAT, XMM-Newton and Chandra, as well as ground-based optical and radio data. Preliminary results were presented at several meetings: HEAD/AAS, November, 1997 a 195th AAS Meeting, January 2000 a Three Islands Conference, April 2000 a X-ray Astronomy 2000, September 2000 a 197th AAS Meeting, January 2001 Two Years of Science with Chandra, September 2001

A new Be star in an open cluster - NGC 6871-8

NASA Technical Reports Server (NTRS)

Grigsby, James A.; Morrison, Nancy D.

1988-01-01

Spectroscopic observations of H-alpha show that star eight in the open cluster NGC 6871 is a previously-undiscovered Be star. The H-alpha profile was observed to vary from clear emission to pure absorption over a period of ten days; later observations over a five-day interval show weak emission along with asymmetries and filling in of the profile.

Cluster-based control of a separating flow over a smoothly contoured ramp

NASA Astrophysics Data System (ADS)

Kaiser, Eurika; Noack, Bernd R.; Spohn, Andreas; Cattafesta, Louis N.; Morzyński, Marek

2017-12-01

The ability to manipulate and control fluid flows is of great importance in many scientific and engineering applications. The proposed closed-loop control framework addresses a key issue of model-based control: The actuation effect often results from slow dynamics of strongly nonlinear interactions which the flow reveals at timescales much longer than the prediction horizon of any model. Hence, we employ a probabilistic approach based on a cluster-based discretization of the Liouville equation for the evolution of the probability distribution. The proposed methodology frames high-dimensional, nonlinear dynamics into low-dimensional, probabilistic, linear dynamics which considerably simplifies the optimal control problem while preserving nonlinear actuation mechanisms. The data-driven approach builds upon a state space discretization using a clustering algorithm which groups kinematically similar flow states into a low number of clusters. The temporal evolution of the probability distribution on this set of clusters is then described by a control-dependent Markov model. This Markov model can be used as predictor for the ergodic probability distribution for a particular control law. This probability distribution approximates the long-term behavior of the original system on which basis the optimal control law is determined. We examine how the approach can be used to improve the open-loop actuation in a separating flow dominated by Kelvin-Helmholtz shedding. For this purpose, the feature space, in which the model is learned, and the admissible control inputs are tailored to strongly oscillatory flows.

The Evolution of Rotation and Activity in Young Open Clusters: the Zero-Age Main Sequence.

NASA Astrophysics Data System (ADS)

Patten, Brian Michael

1995-01-01

I have undertaken a program of ground- and space -based observations to measure photometric rotation periods and X-ray luminosities for late-type stars in the young open clusters IC 2391 and IC 2602. With cluster ages of ~30 Myr, IC 2391 and IC 2602 are ideal sites in which to observe conditions at the ZAMS since the solar-type stars in these clusters have not been on the main sequence long enough to undergo significant magnetic braking. The ROSAT survey of IC 2391 revealed 80 X-ray sources, 44 of which were found to be associated with stars which are now classified as new cluster members. Among the solar-type stars in both IC 2391 and IC 2602, I find a factor of ~25 spread in the distribution of rotation periods, which range from 0.21 to 4.86 day. I also find a factor of ~10-20 spread in the range of LX about a median LX value of ~10^{30 } erg s^{-1} for both clusters. These results show conclusively that stars arrive on the ZAMS with a wide range of rotation rates and coronal activity levels. When compared to data from older clusters, such as the Pleiades and the Hyades, there is an overall decline observed in both the rotation rates and median X-ray luminosity of cluster members with increasing age, however, while the spread in the range of rotation rates decreases to a small value, the spread in the range of LX values as a fraction of the median is observed to increase with age. This behavior is best explained through a dependence of LX on P rot which is weak in the young clusters and strong in the older clusters. The Rossby diagram shows there is a tight correlation between L X/Lbol and the Rossby number, Prot divided by the convective turnover time. Young, rapidly rotating, main sequence stars lie along a plateau of magnetic saturation, where LX has a weak dependence on rotation period, while older, more slowly rotating stars lie in a region on the Rossby diagram where LX has a strong dependence on rotation period.

Flying across Galaxy Clusters with Google Earth: additional imagery from SDSS co-added data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hao, Jiangang; Annis, James; /Fermilab

2010-10-01

Galaxy clusters are spectacular. We provide a Google Earth compatible imagery for the deep co-added images from the Sloan Digital Sky Survey and make it a tool for examing galaxy clusters. Google Earth (in sky mode) provides a highly interactive environment for visualizing the sky. By encoding the galaxy cluster information into a kml/kmz file, one can use Google Earth as a tool for examining galaxy clusters and fly across them freely. However, the resolution of the images provided by Google Earth is not very high. This is partially because the major imagery google earth used is from Sloan Digitalmore » Sky Survey (SDSS) (SDSS collaboration 2000) and the resolutions have been reduced to speed up the web transferring. To have higher resolution images, you need to add your own images in a way that Google Earth can understand. The SDSS co-added data are the co-addition of {approx}100 scans of images from SDSS stripe 82 (Annis et al. 2010). It provides the deepest images based on SDSS and reach as deep as about redshift 1.0. Based on the co-added images, we created color images in a way as described by Lupton et al. (2004) and convert the color images to Google Earth compatible images using wcs2kml (Brewer et al. 2007). The images are stored at a public server at Fermi National Accelerator Laboratory and can be accessed by the public. To view those images in Google Earth, you need to download a kmz file, which contains the links to the color images, and then open the kmz file with your Google Earth. To meet different needs for resolutions, we provide three kmz files corresponding to low, medium and high resolution images. We recommend the high resolution one as long as you have a broadband Internet connection, though you should choose to download any of them, depending on your own needs and Internet speed. After you open the downloaded kmz file with Google Earth (in sky mode), it takes about 5 minutes (depending on your Internet connection and the resolution of images you want) to get some initial images loaded. Then, additional images corresponding to the region you are browsing will be loaded automatically. So far, you have access to all the co-added images. But you still do not have the galaxy cluster position information to look at. In order to see the galaxy clusters, you need to download another kmz file that tell Google Earth where to find the galaxy clusters in the co-added data region. We provide a kmz file for a few galaxy clusters in the stripe 82 region and you can download and open it with Google Earth. In the SDSS co-added region (stripe 82 region), the imagery from Google Earth itself is from the Digitized Sky Survey (2007), which is in very poor quality. In Figure1 and Figure2, we show screenshots of a cluster with and without the new co-added imagery in Google Earth. Much more details have been revealed with the deep images.« less

WIYN OPEN CLUSTER STUDY. LXXI. SPECTROSCOPIC MEMBERSHIP AND ORBITS OF NGC 6791 SUB-SUBGIANTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Milliman, Katelyn E.; Leiner, Emily; Mathieu, Robert D.

2016-06-01

In an optical color–magnitude diagram, sub-subgiants (SSGs) lie redward of the main sequence and fainter than the base of the red giant branch in a region not easily populated by standard stellar-evolution pathways. In this paper, we present multi-epoch radial velocities for five SSG candidates in the old and metal-rich open cluster NGC 6791 (8 Gyr, [Fe/H] = +0.30). From these data, we are able to make three-dimensional kinematic membership determinations and confirm four SSG candidates as likely cluster members. We also identify three member SSGs as short-period binary systems and present their orbital solutions. These are the first SSGsmore » with known three-dimensional kinematic membership, binary status, and orbital parameters since the two SSGs in M67 studied by Mathieu et al. We also remark on the other properties of these stars including photometric variability, H α emission, and X-ray luminosity. The membership confirmation of these SSGs in NGC 6791 strengthens the case that SSGs are a new class of nonstandard stellar evolution products, and that a physical mechanism must be found that explains the evolutionary paths of these stars.« less

Personalized microbial network inference via co-regularized spectral clustering.

PubMed

Imangaliyev, Sultan; Keijser, Bart; Crielaard, Wim; Tsivtsivadze, Evgeni

2015-07-15

We use Human Microbiome Project (HMP) cohort (Peterson et al., 2009) to infer personalized oral microbial networks of healthy individuals. To determine clustering of individuals with similar microbial profiles, co-regularized spectral clustering algorithm is applied to the dataset. For each cluster we discovered, we compute co-occurrence relationships among the microbial species that determine microbial network per cluster of individuals. The results of our study suggest that there are several differences in microbial interactions on personalized network level in healthy oral samples acquired from various niches. Based on the results of co-regularized spectral clustering we discover two groups of individuals with different topology of their microbial interaction network. The results of microbial network inference suggest that niche-wise interactions are different in these two groups. Our study shows that healthy individuals have different microbial clusters according to their oral microbiota. Such personalized microbial networks open a better understanding of the microbial ecology of healthy oral cavities and new possibilities for future targeted medication. The scripts written in scientific Python and in Matlab, which were used for network visualization, are provided for download on the website http://learning-machines.com/. Copyright © 2015 Elsevier Inc. All rights reserved.

AN ASTEROSEISMIC MEMBERSHIP STUDY OF THE RED GIANTS IN THREE OPEN CLUSTERS OBSERVED BY KEPLER: NGC 6791, NGC 6819, AND NGC 6811

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stello, Dennis; Huber, Daniel; Bedding, Timothy R.

Studying star clusters offers significant advances in stellar astrophysics due to the combined power of having many stars with essentially the same distance, age, and initial composition. This makes clusters excellent test benches for verification of stellar evolution theory. To fully exploit this potential, it is vital that the star sample is uncontaminated by stars that are not members of the cluster. Techniques for determining cluster membership therefore play a key role in the investigation of clusters. We present results on three clusters in the Kepler field of view based on a newly established technique that uses asteroseismology to identifymore » fore- or background stars in the field, which demonstrates advantages over classical methods such as kinematic and photometry measurements. Four previously identified seismic non-members in NGC 6819 are confirmed in this study, and three additional non-members are found-two in NGC 6819 and one in NGC 6791. We further highlight which stars are, or might be, affected by blending, which needs to be taken into account when analyzing these Kepler data.« less

Google Classroom and Open Clusters: An Authentic Science Research Project for High School Students

NASA Astrophysics Data System (ADS)

Johnson, Chelen H.; Linahan, Marcella; Cuba, Allison Frances; Dickmann, Samantha Rose; Hogan, Eleanor B.; Karos, Demetra N.; Kozikowski, Kendall G.; Kozikowski, Lauren Paige; Nelson, Samantha Brooks; O'Hara, Kevin Thomas; Ropinski, Brandi Lucia; Scarpa, Gabriella; Garmany, Catharine D.

2016-01-01

STEM education is about offering unique opportunities to our students. For the past three years, students from two high schools (Breck School in Minneapolis, MN, and Carmel Catholic High School in Mundelein, IL) have collaborated on authentic astronomy research projects. This past year they surveyed archival data of open clusters to determine if a clear turnoff point could be unequivocally determined. Age and distance to each open cluster were calculated. Additionally, students requested time on several telescopes to obtain original data to compare to the archival data. Students from each school worked in collaborative teams, sharing and verifying results through regular online hangouts and chats. Work papers were stored in a shared drive and on a student-designed Google site to facilitate dissemination of documents between the two schools.

Deep and wide photometry of two open clusters NGC 1245 and NGC 2506: dynamical evolution and halo

NASA Astrophysics Data System (ADS)

Lee, S. H.; Kang, Y.-W.; Ann, H. B.

2013-06-01

We studied the structure of two old open clusters, NGC 1245 and NGC 2506, from a wide and deep VI photometry data acquired using the CFH12K CCD camera at Canada-France-Hawaii Telescope. We devised a new method for assigning cluster membership probability to individual stars using both spatial positions and positions in the colour-magnitude diagram. From analyses of the luminosity functions at several cluster-centric radii and the radial surface density profiles derived from stars with different luminosity ranges, we found that the two clusters are dynamically relaxed to drive significant mass segregation and evaporation of some fraction of low-mass stars. There seems to be a signature of tidal tail in NGC 1245 but the signal is too low to be confirmed.

Multicolor CCD photometry of the open cluster NGC 752

NASA Astrophysics Data System (ADS)

Bartašiūtė, Stanislava; Janusz, Robert; Boyle, Richard P.; Philip, A. G. Davis; Deveikis, Viktoras

2010-01-01

We obtained CCD observations of the open cluster NGC 752 with the 1.8m Vatican Advanced Technology Telescope (Mt. Graham, Arizona) with a 4K CCD camera and eight intermediate-band filters of the Stromvil (Strömgren + Vilnius) system. Four 12‧ × 12‧ fields were observed, covering the central part of the cluster. The good-quality multicolor data made it possible to obtain precise estimates of distance moduli, metallicity and foreground reddening for individual stars down to the limiting magnitude, V = 17.5, enabling photometric identification of faint cluster members. The new observations provide an extension of the lower main sequence to three magnitudes beyond the previous (photographic) limit. A relatively small number of photometric members identified at fainter magnitudes seems to be indicative of actual dissolution of the cluster from the low-mass end.

Influence of Syllable Structure on L2 Auditory Word Learning

ERIC Educational Resources Information Center

Hamada, Megumi; Goya, Hideki

2015-01-01

This study investigated the role of syllable structure in L2 auditory word learning. Based on research on cross-linguistic variation of speech perception and lexical memory, it was hypothesized that Japanese L1 learners of English would learn English words with an open-syllable structure without consonant clusters better than words with a…

Interaction Networks: Generating High Level Hints Based on Network Community Clustering

ERIC Educational Resources Information Center

Eagle, Michael; Johnson, Matthew; Barnes, Tiffany

2012-01-01

We introduce a novel data structure, the Interaction Network, for representing interaction-data from open problem solving environment tutors. We show how using network community detecting techniques are used to identify sub-goals in problems in a logic tutor. We then use those community structures to generate high level hints between sub-goals.…

Molecular dynamics simulation study of PTP1B with allosteric inhibitor and its application in receptor based pharmacophore modeling

NASA Astrophysics Data System (ADS)

Bharatham, Kavitha; Bharatham, Nagakumar; Kwon, Yong Jung; Lee, Keun Woo

2008-12-01

Allosteric inhibition of protein tyrosine phosphatase 1B (PTP1B), has paved a new path to design specific inhibitors for PTP1B, which is an important drug target for the treatment of type II diabetes and obesity. The PTP1B1-282-allosteric inhibitor complex crystal structure lacks α7 (287-298) and moreover there is no available 3D structure of PTP1B1-298 in open form. As the interaction between α7 and α6-α3 helices plays a crucial role in allosteric inhibition, α7 was modeled to the PTP1B1-282 in open form complexed with an allosteric inhibitor (compound-2) and a 5 ns MD simulation was performed to investigate the relative orientation of the α7-α6-α3 helices. The simulation conformational space was statistically sampled by clustering analyses. This approach was helpful to reveal certain clues on PTP1B allosteric inhibition. The simulation was also utilized in the generation of receptor based pharmacophore models to include the conformational flexibility of the protein-inhibitor complex. Three cluster representative structures of the highly populated clusters were selected for pharmacophore model generation. The three pharmacophore models were subsequently utilized for screening databases to retrieve molecules containing the features that complement the allosteric site. The retrieved hits were filtered based on certain drug-like properties and molecular docking simulations were performed in two different conformations of protein. Thus, performing MD simulation with α7 to investigate the changes at the allosteric site, then developing receptor based pharmacophore models and finally docking the retrieved hits into two distinct conformations will be a reliable methodology in identifying PTP1B allosteric inhibitors.

The Open Cluster NGC 2437 (Messier 46)

NASA Astrophysics Data System (ADS)

Davidge, T. J.

2013-02-01

The stellar content of the open cluster NGC 2437 (Messier 46) is investigated using moderately deep u∗, g‧, and r‧ MegaCam images. When compared with solar metallicity isochrones, the (g‧,u‧ - g‧) and (r‧,g‧ - r‧) CMDs are consistent with an age log(tyr) = 8.35 ± 0.15, a distance modulus μ0 = 11.05 ± 0.05, and a color excess E(B - V) = 0.115 ± 0.035. The r‧ luminosity function (LF) of main sequence stars in the magnitude range r‧ < 17 (i.e., masses ≳0.8 M⊙) has a shape that follows solar neighborhood star counts. However, at fainter magnitudes, the cluster LF is flat, in contrast with what would be expected from solar neighborhood counts. The clustering properties of stars in NGC 2437 are investigated by examining the two-point angular correlation functions of main sequence stars in different brightness ranges. Main sequence stars fainter than r‧ = 17 are less centrally concentrated than brighter stars and are found over a larger area of the sky, suggesting that there is a corona of faint main sequence stars around NGC 2437. Based on the flat LF and extended spatial distribution of faint stars, it is concluded that NGC 2437 is actively shedding stars with masses ≲0.8 M⊙. Based on observations obtained with MegaPrime/MegaCam, a joint project of CFHT and Commissariat à l'énergie atomique et aux énergies alternative (CEA)/Dapnia, at the Canada-France-Hawaii Telescope (CFHT), which is operated by the National Research Council (NRC) of Canada, the Institut National des Sciences de l’Univers of the Centre National de la Recherche Scientifique (CNRS) of France, and the University of Hawaii.

Feature Geo Analytics and Big Data Processing: Hybrid Approaches for Earth Science and Real-Time Decision Support

NASA Astrophysics Data System (ADS)

Wright, D. J.; Raad, M.; Hoel, E.; Park, M.; Mollenkopf, A.; Trujillo, R.

2016-12-01

Introduced is a new approach for processing spatiotemporal big data by leveraging distributed analytics and storage. A suite of temporally-aware analysis tools summarizes data nearby or within variable windows, aggregates points (e.g., for various sensor observations or vessel positions), reconstructs time-enabled points into tracks (e.g., for mapping and visualizing storm tracks), joins features (e.g., to find associations between features based on attributes, spatial relationships, temporal relationships or all three simultaneously), calculates point densities, finds hot spots (e.g., in species distributions), and creates space-time slices and cubes (e.g., in microweather applications with temperature, humidity, and pressure, or within human mobility studies). These "feature geo analytics" tools run in both batch and streaming spatial analysis mode as distributed computations across a cluster of servers on typical "big" data sets, where static data exist in traditional geospatial formats (e.g., shapefile) locally on a disk or file share, attached as static spatiotemporal big data stores, or streamed in near-real-time. In other words, the approach registers large datasets or data stores with ArcGIS Server, then distributes analysis across a cluster of machines for parallel processing. Several brief use cases will be highlighted based on a 16-node server cluster at 14 Gb RAM per node, allowing, for example, the buffering of over 8 million points or thousands of polygons in 1 minute. The approach is "hybrid" in that ArcGIS Server integrates open-source big data frameworks such as Apache Hadoop and Apache Spark on the cluster in order to run the analytics. In addition, the user may devise and connect custom open-source interfaces and tools developed in Python or Python Notebooks; the common denominator being the familiar REST API.

Deriving temperature, mass, and age of evolved stars from high-resolution spectra. Application to field stars and the open cluster IC 4651

NASA Astrophysics Data System (ADS)

Biazzo, K.; Pasquini, L.; Girardi, L.; Frasca, A.; da Silva, L.; Setiawan, J.; Marilli, E.; Hatzes, A. P.; Catalano, S.

2007-12-01

Aims:We test our capability of deriving stellar physical parameters of giant stars by analysing a sample of field stars and the well studied open cluster IC 4651 with different spectroscopic methods. Methods: The use of a technique based on line-depth ratios (LDRs) allows us to determine with high precision the effective temperature of the stars and to compare the results with those obtained with a classical LTE abundance analysis. Results: (i) For the field stars we find that the temperatures derived by means of the LDR method are in excellent agreement with those found by the spectral synthesis. This result is extremely encouraging because it shows that spectra can be used to firmly derive population characteristics (e.g., mass and age) of the observed stars. (ii) For the IC 4651 stars we use the determined effective temperature to derive the following results. a) The reddening E(B-V) of the cluster is 0.12±0.02, largely independent of the color-temperature calibration used. b) The age of the cluster is 1.2±0.2 Gyr. c) The typical mass of the analysed giant stars is 2.0±0.2~M⊙. Moreover, we find a systematic difference of about 0.2 dex in log g between spectroscopic and evolutionary values. Conclusions: We conclude that, in spite of known limitations, a classical spectroscopic analysis of giant stars may indeed result in very reliable stellar parameters. We caution that the quality of the agreement, on the other hand, depends on the details of the adopted spectroscopic analysis. Based on observations collected at the ESO telescopes at the Paranal and La Silla Observatories, Chile.

Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity.

PubMed

He, Yan; Caporaso, J Gregory; Jiang, Xiao-Tao; Sheng, Hua-Fang; Huse, Susan M; Rideout, Jai Ram; Edgar, Robert C; Kopylova, Evguenia; Walters, William A; Knight, Rob; Zhou, Hong-Wei

2015-01-01

The operational taxonomic unit (OTU) is widely used in microbial ecology. Reproducibility in microbial ecology research depends on the reliability of OTU-based 16S ribosomal subunit RNA (rRNA) analyses. Here, we report that many hierarchical and greedy clustering methods produce unstable OTUs, with membership that depends on the number of sequences clustered. If OTUs are regenerated with additional sequences or samples, sequences originally assigned to a given OTU can be split into different OTUs. Alternatively, sequences assigned to different OTUs can be merged into a single OTU. This OTU instability affects alpha-diversity analyses such as rarefaction curves, beta-diversity analyses such as distance-based ordination (for example, Principal Coordinate Analysis (PCoA)), and the identification of differentially represented OTUs. Our results show that the proportion of unstable OTUs varies for different clustering methods. We found that the closed-reference method is the only one that produces completely stable OTUs, with the caveat that sequences that do not match a pre-existing reference sequence collection are discarded. As a compromise to the factors listed above, we propose using an open-reference method to enhance OTU stability. This type of method clusters sequences against a database and includes unmatched sequences by clustering them via a relatively stable de novo clustering method. OTU stability is an important consideration when analyzing microbial diversity and is a feature that should be taken into account during the development of novel OTU clustering methods.

Cluster and propensity based approximation of a network

PubMed Central

2013-01-01

Background The models in this article generalize current models for both correlation networks and multigraph networks. Correlation networks are widely applied in genomics research. In contrast to general networks, it is straightforward to test the statistical significance of an edge in a correlation network. It is also easy to decompose the underlying correlation matrix and generate informative network statistics such as the module eigenvector. However, correlation networks only capture the connections between numeric variables. An open question is whether one can find suitable decompositions of the similarity measures employed in constructing general networks. Multigraph networks are attractive because they support likelihood based inference. Unfortunately, it is unclear how to adjust current statistical methods to detect the clusters inherent in many data sets. Results Here we present an intuitive and parsimonious parametrization of a general similarity measure such as a network adjacency matrix. The cluster and propensity based approximation (CPBA) of a network not only generalizes correlation network methods but also multigraph methods. In particular, it gives rise to a novel and more realistic multigraph model that accounts for clustering and provides likelihood based tests for assessing the significance of an edge after controlling for clustering. We present a novel Majorization-Minimization (MM) algorithm for estimating the parameters of the CPBA. To illustrate the practical utility of the CPBA of a network, we apply it to gene expression data and to a bi-partite network model for diseases and disease genes from the Online Mendelian Inheritance in Man (OMIM). Conclusions The CPBA of a network is theoretically appealing since a) it generalizes correlation and multigraph network methods, b) it improves likelihood based significance tests for edge counts, c) it directly models higher-order relationships between clusters, and d) it suggests novel clustering algorithms. The CPBA of a network is implemented in Fortran 95 and bundled in the freely available R package PropClust. PMID:23497424

JMS: An Open Source Workflow Management System and Web-Based Cluster Front-End for High Performance Computing.

PubMed

Brown, David K; Penkler, David L; Musyoka, Thommas M; Bishop, Özlem Tastan

2015-01-01

Complex computational pipelines are becoming a staple of modern scientific research. Often these pipelines are resource intensive and require days of computing time. In such cases, it makes sense to run them over high performance computing (HPC) clusters where they can take advantage of the aggregated resources of many powerful computers. In addition to this, researchers often want to integrate their workflows into their own web servers. In these cases, software is needed to manage the submission of jobs from the web interface to the cluster and then return the results once the job has finished executing. We have developed the Job Management System (JMS), a workflow management system and web interface for high performance computing (HPC). JMS provides users with a user-friendly web interface for creating complex workflows with multiple stages. It integrates this workflow functionality with the resource manager, a tool that is used to control and manage batch jobs on HPC clusters. As such, JMS combines workflow management functionality with cluster administration functionality. In addition, JMS provides developer tools including a code editor and the ability to version tools and scripts. JMS can be used by researchers from any field to build and run complex computational pipelines and provides functionality to include these pipelines in external interfaces. JMS is currently being used to house a number of bioinformatics pipelines at the Research Unit in Bioinformatics (RUBi) at Rhodes University. JMS is an open-source project and is freely available at https://github.com/RUBi-ZA/JMS.

The first search for variable stars in the open cluster NGC 6253 and its surrounding field

NASA Astrophysics Data System (ADS)

de Marchi, F.; Poretti, E.; Montalto, M.; Desidera, S.; Piotto, G.

2010-01-01

Aims: This work presents the first high-precision variability survey in the field of the intermediate-age, metal-rich open cluster NGC 6253. Clusters of this type are benchmarks for stellar evolution models. Methods: Continuous photometric monitoring of the cluster and its surrounding field was performed over a time span of ten nights using the Wide Field Imager mounted at the ESO-MPI 2.2 m telescope. High-quality timeseries, each composed of about 800 datapoints, were obtained for 250 000 stars using ISIS and DAOPHOT packages. Candidate members were selected by using the colour-magnitude diagrams and period-luminosity-colour relations. Membership probabilities based on the proper motions were also used. The membership of all the variables discovered within a radius of 8´ from the centre is discussed by comparing the incidence of the classes in the cluster direction and in the surrounding field. Results: We discovered 595 variables and we also characterized most of them providing their variability classes, periods, and amplitudes. The sample is complete for short periods: we classified 20 pulsating variables, 225 contact systems, 99 eclipsing systems (22 β Lyr type, 59 β Per type, 18 RS CVn type), and 77 rotational variables. The time-baseline hampered the precise characterization of 173 variables with periods longer than 4-5 days. Moreover, we found a cataclysmic system undergoing an outburst of about 2.5 mag. We propose a list of 35 variable stars as probable members of NGC 6253. ARRAY(0x383c870)

JMS: An Open Source Workflow Management System and Web-Based Cluster Front-End for High Performance Computing

PubMed Central

Brown, David K.; Penkler, David L.; Musyoka, Thommas M.; Bishop, Özlem Tastan

2015-01-01

Complex computational pipelines are becoming a staple of modern scientific research. Often these pipelines are resource intensive and require days of computing time. In such cases, it makes sense to run them over high performance computing (HPC) clusters where they can take advantage of the aggregated resources of many powerful computers. In addition to this, researchers often want to integrate their workflows into their own web servers. In these cases, software is needed to manage the submission of jobs from the web interface to the cluster and then return the results once the job has finished executing. We have developed the Job Management System (JMS), a workflow management system and web interface for high performance computing (HPC). JMS provides users with a user-friendly web interface for creating complex workflows with multiple stages. It integrates this workflow functionality with the resource manager, a tool that is used to control and manage batch jobs on HPC clusters. As such, JMS combines workflow management functionality with cluster administration functionality. In addition, JMS provides developer tools including a code editor and the ability to version tools and scripts. JMS can be used by researchers from any field to build and run complex computational pipelines and provides functionality to include these pipelines in external interfaces. JMS is currently being used to house a number of bioinformatics pipelines at the Research Unit in Bioinformatics (RUBi) at Rhodes University. JMS is an open-source project and is freely available at https://github.com/RUBi-ZA/JMS. PMID:26280450

Scalable cloud without dedicated storage

NASA Astrophysics Data System (ADS)

Batkovich, D. V.; Kompaniets, M. V.; Zarochentsev, A. K.

2015-05-01

We present a prototype of a scalable computing cloud. It is intended to be deployed on the basis of a cluster without the separate dedicated storage. The dedicated storage is replaced by the distributed software storage. In addition, all cluster nodes are used both as computing nodes and as storage nodes. This solution increases utilization of the cluster resources as well as improves fault tolerance and performance of the distributed storage. Another advantage of this solution is high scalability with a relatively low initial and maintenance cost. The solution is built on the basis of the open source components like OpenStack, CEPH, etc.

IDENTIFICATION OF THE LITHIUM DEPLETION BOUNDARY AND AGE OF THE SOUTHERN OPEN CLUSTER BLANCO 1

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cargile, P. A.; James, D. J.; Jeffries, R. D., E-mail: p.cargile@vanderbilt.ed

2010-12-20

We present results from a spectroscopic study of the very low mass members of the Southern open cluster Blanco 1 using the Gemini-N telescope. We obtained intermediate resolution (R {approx} 4400) GMOS spectra for 15 cluster candidate members with I {approx} 14-20 mag, and employed a series of membership criteria-proximity to the cluster's sequence in an I/I - K{sub s} color-magnitude diagram (CMD), kinematics agreeing with the cluster systemic motion, magnetic activity as a youth indicator-to classify 10 of these objects as probable cluster members. For these objects, we searched for the presence of the Li I 6708 A featuremore » to identify the lithium depletion boundary (LDB) in Blanco 1. The I/I - K{sub s} CMD shows a clear mass segregation in the Li distribution along the cluster sequence; namely, all higher mass stars are found to be Li poor, while lower mass stars are found to be Li rich. The division between Li-poor and Li-rich (i.e., the LDB) in Blanco 1 is found at I = 18.78 {+-} 0.24 and I - K{sub s} = 3.05 {+-} 0.10. Using current pre-main-sequence evolutionary models, we determine an LDB age of 132 {+-} 24 Myr. Comparing our derived LDB age to upper-main-sequence isochrone ages for Blanco 1, as well as for other open clusters with identified LDBs, we find good chronometric consistency when using stellar evolution models that incorporate a moderate degree of convective core overshoot.« less

A Constraint on the Formation Timescale of the Young Open Cluster NGC 2264: Lithium Abundance of Pre-main Sequence Stars

NASA Astrophysics Data System (ADS)

Lim, Beomdu; Sung, Hwankyung; Kim, Jinyoung S.; Bessell, Michael S.; Hwang, Narae; Park, Byeong-Gon

2016-11-01

The timescale of cluster formation is an essential parameter in order to understand the formation process of star clusters. Pre-main sequence (PMS) stars in nearby young open clusters reveal a large spread in brightness. If the spread were considered to be a result of a real spread in age, the corresponding cluster formation timescale would be about 5-20 Myr. Hence it could be interpreted that star formation in an open cluster is prolonged for up to a few tens of Myr. However, difficulties in reddening correction, observational errors, and systematic uncertainties introduced by imperfect evolutionary models for PMS stars can result in an artificial age spread. Alternatively, we can utilize Li abundance as a relative age indicator of PMS star to determine the cluster formation timescale. The optical spectra of 134 PMS stars in NGC 2264 have been obtained with MMT/Hectochelle. The equivalent widths have been measured for 86 PMS stars with a detectable Li line (3500\\lt {T}{eff}[{{K}}]≤slant 6500). Li abundance under the condition of local thermodynamic equilibrium (LTE) was derived using the conventional curve of growth method. After correction for non-LTE effects, we find that the initial Li abundance of NGC 2264 is A({Li})=3.2+/- 0.2. From the distribution of the Li abundances, the underlying age spread of the visible PMS stars is estimated to be about 3-4 Myr and this, together with the presence of embedded populations in NGC 2264, suggests that the cluster formed on a timescale shorter than 5 Myr.

HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks

PubMed Central

Azad, Ariful; Ouzounis, Christos A; Kyrpides, Nikos C; Buluç, Aydin

2018-01-01

Abstract Biological networks capture structural or functional properties of relevant entities such as molecules, proteins or genes. Characteristic examples are gene expression networks or protein–protein interaction networks, which hold information about functional affinities or structural similarities. Such networks have been expanding in size due to increasing scale and abundance of biological data. While various clustering algorithms have been proposed to find highly connected regions, Markov Clustering (MCL) has been one of the most successful approaches to cluster sequence similarity or expression networks. Despite its popularity, MCL’s scalability to cluster large datasets still remains a bottleneck due to high running times and memory demands. Here, we present High-performance MCL (HipMCL), a parallel implementation of the original MCL algorithm that can run on distributed-memory computers. We show that HipMCL can efficiently utilize 2000 compute nodes and cluster a network of ∼70 million nodes with ∼68 billion edges in ∼2.4 h. By exploiting distributed-memory environments, HipMCL clusters large-scale networks several orders of magnitude faster than MCL and enables clustering of even bigger networks. HipMCL is based on MPI and OpenMP and is freely available under a modified BSD license. PMID:29315405

HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks

DOE PAGES

Azad, Ariful; Pavlopoulos, Georgios A.; Ouzounis, Christos A.; ...

2018-01-05

Biological networks capture structural or functional properties of relevant entities such as molecules, proteins or genes. Characteristic examples are gene expression networks or protein–protein interaction networks, which hold information about functional affinities or structural similarities. Such networks have been expanding in size due to increasing scale and abundance of biological data. While various clustering algorithms have been proposed to find highly connected regions, Markov Clustering (MCL) has been one of the most successful approaches to cluster sequence similarity or expression networks. Despite its popularity, MCL’s scalability to cluster large datasets still remains a bottleneck due to high running times andmore » memory demands. In this paper, we present High-performance MCL (HipMCL), a parallel implementation of the original MCL algorithm that can run on distributed-memory computers. We show that HipMCL can efficiently utilize 2000 compute nodes and cluster a network of ~70 million nodes with ~68 billion edges in ~2.4 h. By exploiting distributed-memory environments, HipMCL clusters large-scale networks several orders of magnitude faster than MCL and enables clustering of even bigger networks. Finally, HipMCL is based on MPI and OpenMP and is freely available under a modified BSD license.« less

HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks

DOE Office of Scientific and Technical Information (OSTI.GOV)

Azad, Ariful; Pavlopoulos, Georgios A.; Ouzounis, Christos A.

Biological networks capture structural or functional properties of relevant entities such as molecules, proteins or genes. Characteristic examples are gene expression networks or protein–protein interaction networks, which hold information about functional affinities or structural similarities. Such networks have been expanding in size due to increasing scale and abundance of biological data. While various clustering algorithms have been proposed to find highly connected regions, Markov Clustering (MCL) has been one of the most successful approaches to cluster sequence similarity or expression networks. Despite its popularity, MCL’s scalability to cluster large datasets still remains a bottleneck due to high running times andmore » memory demands. In this paper, we present High-performance MCL (HipMCL), a parallel implementation of the original MCL algorithm that can run on distributed-memory computers. We show that HipMCL can efficiently utilize 2000 compute nodes and cluster a network of ~70 million nodes with ~68 billion edges in ~2.4 h. By exploiting distributed-memory environments, HipMCL clusters large-scale networks several orders of magnitude faster than MCL and enables clustering of even bigger networks. Finally, HipMCL is based on MPI and OpenMP and is freely available under a modified BSD license.« less

OpenMP Parallelization and Optimization of Graph-Based Machine Learning Algorithms

DOE PAGES

Meng, Zhaoyi; Koniges, Alice; He, Yun Helen; ...

2016-09-21

In this paper, we investigate the OpenMP parallelization and optimization of two novel data classification algorithms. The new algorithms are based on graph and PDE solution techniques and provide significant accuracy and performance advantages over traditional data classification algorithms in serial mode. The methods leverage the Nystrom extension to calculate eigenvalue/eigenvectors of the graph Laplacian and this is a self-contained module that can be used in conjunction with other graph-Laplacian based methods such as spectral clustering. We use performance tools to collect the hotspots and memory access of the serial codes and use OpenMP as the parallelization language to parallelizemore » the most time-consuming parts. Where possible, we also use library routines. We then optimize the OpenMP implementations and detail the performance on traditional supercomputer nodes (in our case a Cray XC30), and test the optimization steps on emerging testbed systems based on Intel’s Knights Corner and Landing processors. We show both performance improvement and strong scaling behavior. Finally, a large number of optimization techniques and analyses are necessary before the algorithm reaches almost ideal scaling.« less

X-ray and optical spectroscopy of the massive young open cluster IC 1805

NASA Astrophysics Data System (ADS)

Rauw, G.; Nazé, Y.

2016-10-01

Context. Very young open clusters are ideal places to study the X-ray properties of a homogeneous population of early-type stars. In this respect, the IC 1805 open cluster is very interesting as it hosts the O4 If+ star HD 15570 thought to be in an evolutionary stage intermediate between a normal O-star and a Wolf-Rayet star. Aims: Such a star could provide a test for theoretical models aiming at explaining the empirical scaling relation between the X-ray and bolometric luminosities of O-type stars. Methods: We have observed IC 1805 with XMM-Newton and further collected optical spectroscopy of some of the O-star members of the cluster. Results: The optical spectra allow us to revisit the orbital solutions of BD+60° 497 and HD 15558, and provide the first evidence of binarity for BD+60° 498. X-ray emission from colliding winds does not appear to play an important role among the O-stars of IC 1805. Notably, the X-ray fluxes do not vary significantly between archival X-ray observations and our XMM-Newton pointing. The very fast rotator BD+60° 513, and to a lesser extent the O4 If+ star HD 15570 appear somewhat underluminous. Whilst the underluminosity of HD 15570 is only marginally significant, its amplitude is found to be compatible with theoretical expectations based on its stellar and wind properties. A number of other X-ray sources are detected in the field, and the brightest objects, many of which are likely low-mass pre-main sequence stars, are analyzed in detail. Based on observations collected with XMM-Newton, an ESA science mission with instruments and contributions directly funded by ESA member states and the USA (NASA), and with the TIGRE telescope (La Luz, Mexico).Table A.1 is only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/594/A82

Clustering methods applied in the detection of Ki67 hot-spots in whole tumor slide images: an efficient way to characterize heterogeneous tissue-based biomarkers.

PubMed

Lopez, Xavier Moles; Debeir, Olivier; Maris, Calliope; Rorive, Sandrine; Roland, Isabelle; Saerens, Marco; Salmon, Isabelle; Decaestecker, Christine

2012-09-01

Whole-slide scanners allow the digitization of an entire histological slide at very high resolution. This new acquisition technique opens a wide range of possibilities for addressing challenging image analysis problems, including the identification of tissue-based biomarkers. In this study, we use whole-slide scanner technology for imaging the proliferating activity patterns in tumor slides based on Ki67 immunohistochemistry. Faced with large images, pathologists require tools that can help them identify tumor regions that exhibit high proliferating activity, called "hot-spots" (HSs). Pathologists need tools that can quantitatively characterize these HS patterns. To respond to this clinical need, the present study investigates various clustering methods with the aim of identifying Ki67 HSs in whole tumor slide images. This task requires a method capable of identifying an unknown number of clusters, which may be highly variable in terms of shape, size, and density. We developed a hybrid clustering method, referred to as Seedlink. Compared to manual HS selections by three pathologists, we show that Seedlink provides an efficient way of detecting Ki67 HSs and improves the agreement among pathologists when identifying HSs. Copyright © 2012 International Society for Advancement of Cytometry.

Photometric Determination of Binary Mass Ratios in the WIYN Open Cluster Study (WOCS) Using Theoretical Isochrones

NASA Astrophysics Data System (ADS)

Cai, K.; Durisen, R. H.; Deliyannis, C. P.

2003-05-01

Binary stars in Galactic open clusters are difficult to detect without spectroscopic observations. However, from theoretical isochrones, we find that binary stars with different primary masses M1 and mass ratios q = M2/M1 have measurably different behaviors in various UBVRI color-magnitude and color-color diagrams. By using appropriate Yonsei-Yale Isochrones, in the best cases we can evaluate M1 and q to within about +/- 0.1Msun and +/- 0.1, respectively, for individual proper-motion members that have multiple WOCS UBVRI measurements of high quality. The cluster metallicity, reddening, and distance modulus and best-fit isochrones are determined self-consistently from the same WOCS data. This technique allows us to detect binaries and determine their mass ratios in open clusters without time-consuming spectrocopy, which is only sensitive to a limited range of binary separations. We will report results from this photometric technique for WOCS cluster M35 for M1 in the range of 1 to 4 Msun. For the lower main sequence, we used the empirical colors to reduce the error introduced by the problematic color transformations of Y2 Isochrones. In addition to other sources of uncertainty, we have considered effects of rapid rotation and pulsational instability. We plan to apply our method to other WOCS clusters in the future and explore differences in binary fractions and/or mass ratio distributions as a function of cluster age, metallicity, and other parameters.

Time-series Spectroscopy of Two Candidate Double Degenerates in the Open Cluster NGC 6633

NASA Astrophysics Data System (ADS)

Williams, Kurtis A.; Serna-Grey, Donald; Chakraborty, Subho; Gianninas, A.; Canton, Paul A.

2015-12-01

SNe Ia are heavily used tools in precision cosmology, yet we still are not certain what the progenitor systems are. General plausibility arguments suggest there is potential for identifying double degenerate SN Ia progenitors in intermediate-age open star clusters. We present time-resolved high-resolution spectroscopy of two white dwarfs (WDs) in the field of the open cluster NGC 6633 that had previously been identified as candidate double degenerates in the cluster. However, three hours of continuous observations of each candidate failed to detect any significant radial velocity variations at the ≳10 km s-1 level, making it highly unlikely that either WD is a double degenerate that will merge within a Hubble Time. The WD LAWDS NGC 6633 4 has a radial velocity inconsistent with cluster membership at the 2.5σ level, while the radial velocity of LAWDS NGC 6633 7 is consistent with cluster membership. We conservatively conclude that LAWDS 7 is a viable massive double degenerate candidate, though unlikely to be a Type Ia progenitor. Astrometric data from GAIA will likely be needed to determine if either WD is truly a cluster member. The data presented herein were obtained at the W.M. Keck Observatory, which is operated as a scientific partnership among the California Institute of Technology, the University of California and the National Aeronautics and Space Administration. The Observatory was made possible by the generous financial support of the W.M. Keck Foundation.

Quantifying opening-mode fracture spatial organization in horizontal wellbore image logs, core and outcrop: Application to Upper Cretaceous Frontier Formation tight gas sandstones, USA

NASA Astrophysics Data System (ADS)

Li, J. Z.; Laubach, S. E.; Gale, J. F. W.; Marrett, R. A.

2018-03-01

The Upper Cretaceous Frontier Formation is a naturally fractured gas-producing sandstone in Wyoming. Regionally, random and statistically more clustered than random patterns exist in the same upper to lower shoreface depositional facies. East-west- and north-south-striking regional fractures sampled using image logs and cores from three horizontal wells exhibit clustered patterns, whereas data collected from east-west-striking fractures in outcrop have patterns that are indistinguishable from random. Image log data analyzed with the correlation count method shows clusters ∼35 m wide and spaced ∼50 to 90 m apart as well as clusters up to 12 m wide with periodic inter-cluster spacings. A hierarchy of cluster sizes exists; organization within clusters is likely fractal. These rocks have markedly different structural and burial histories, so regional differences in degree of clustering are unsurprising. Clustered patterns correspond to fractures having core quartz deposition contemporaneous with fracture opening, circumstances that some models suggest might affect spacing patterns by interfering with fracture growth. Our results show that quantifying and identifying patterns as statistically more or less clustered than random delineates differences in fracture patterns that are not otherwise apparent but that may influence gas and water production, and therefore may be economically important.

Implementation of hybrid clustering based on partitioning around medoids algorithm and divisive analysis on human Papillomavirus DNA

NASA Astrophysics Data System (ADS)

Arimbi, Mentari Dian; Bustamam, Alhadi; Lestari, Dian

2017-03-01

Data clustering can be executed through partition or hierarchical method for many types of data including DNA sequences. Both clustering methods can be combined by processing partition algorithm in the first level and hierarchical in the second level, called hybrid clustering. In the partition phase some popular methods such as PAM, K-means, or Fuzzy c-means methods could be applied. In this study we selected partitioning around medoids (PAM) in our partition stage. Furthermore, following the partition algorithm, in hierarchical stage we applied divisive analysis algorithm (DIANA) in order to have more specific clusters and sub clusters structures. The number of main clusters is determined using Davies Bouldin Index (DBI) value. We choose the optimal number of clusters if the results minimize the DBI value. In this work, we conduct the clustering on 1252 HPV DNA sequences data from GenBank. The characteristic extraction is initially performed, followed by normalizing and genetic distance calculation using Euclidean distance. In our implementation, we used the hybrid PAM and DIANA using the R open source programming tool. In our results, we obtained 3 main clusters with average DBI value is 0.979, using PAM in the first stage. After executing DIANA in the second stage, we obtained 4 sub clusters for Cluster-1, 9 sub clusters for Cluster-2 and 2 sub clusters in Cluster-3, with the BDI value 0.972, 0.771, and 0.768 for each main cluster respectively. Since the second stage produce lower DBI value compare to the DBI value in the first stage, we conclude that this hybrid approach can improve the accuracy of our clustering results.

Integrated spectral study of small angular diameter galactic open clusters

NASA Astrophysics Data System (ADS)

Clariá, J. J.; Ahumada, A. V.; Bica, E.; Pavani, D. B.; Parisi, M. C.

2017-10-01

This paper presents flux-calibrated integrated spectra obtained at Complejo Astronómico El Leoncito (CASLEO, Argentina) for a sample of 9 Galactic open clusters of small angular diameter. The spectra cover the optical range (3800-6800 Å), with a resolution of ˜14 Å. With one exception (Ruprecht 158), the selected clusters are projected into the fourth Galactic quadrant (282o < l < 345o) near the Galactic plane (∣b∣ ≤ 9o). We performed simultaneous estimates of foreground interstellar reddening and age by comparing the continuum distribution and line strenghts of the cluster spectra with those of template cluster spectra with known parameters. We thus provide spectroscopic information independent from that derived through color-magnitude diagram studies. We found three clusters (Collinder 249, NGC 4463 and Ruprecht 122) younger than ˜40 Myr, four moderately young ones (BH 92, Harvard 5, Hogg 14 and Pismis 23) with ages within 200-400 Myr, and two intermediate-age ones (Ruprecht 158 and ESO 065-SC07) with ages within 1.0-2.2 Gyr. The derived foreground E(B - V) color excesses vary from around 0.0 in Ruprecht 158 to ˜1.1 in Pismis 23. In general terms, the results obtained show good agreement with previous photometric results. In Ruprecht 158 and BH 92, however, some differences are found between the parameters here obtained and previous values in the literature. Individual spectra of some comparatively bright stars located in the fields of 5 out of the 9 clusters here studied, allowed us to evaluate their membership status. The current cluster sample complements that of 46 open clusters previously studied by our group in an effort to gather a spectral library with several clusters per age bin. The cluster spectral library that we have been building is an important tool to tie studies of resolved and unresolved stellar content.

UBVI CCD Photometry of the Open Clusters NGC 4609 and Hogg 15

NASA Astrophysics Data System (ADS)

Kook, Seung-Hwa; Sung, Hwankyung; Bessell, M. S.

2010-10-01

{UBVI CCD photometry is obtained for the open clusters NGC 4609 and Hogg 15 in Crux. For NGC 4609, CCD data are presented for the first time. From new photometry we derive the reddening, distance modulus and age of each cluster - NGC 4609 : E(B-V) = 0.37 ± 0.03, V_0 - M_V = 10.60 ± 0.08, log τ= 7.7 ± 0.1; Hogg 15 : E(B-V) = 1.13 ± 0.11, V_0 - M_V = 12.50 ± 0.15, log τ ≲ 6.6. The young age of Hogg 15 strongly implies that WR 47 is a member of the cluster. We also determine the mass function of these clusters and obtain a slope Γ = -1.2 (± 0.3) for NGC 4609 which is normal and a somewhat shallow slope (Γ = -0.95 ± 0.5) for Hogg 15.

Evaluating gyrochronology on the zero-age-main-sequence: rotation periods in the southern open cluster Blanco 1 from the Kelt-South survey

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cargile, P. A.; Pepper, J.; Siverd, R.

2014-02-10

We report periods for 33 members of Blanco 1 as measured from Kilodegree Extremely Little Telescope-South light curves, the first reported rotation periods for this benchmark zero-age-main-sequence open cluster. The distribution of these stars spans from late-A or early-F dwarfs to mid-K with periods ranging from less than a day to ∼8 days. The rotation period distribution has a morphology similar to the coeval Pleiades cluster, suggesting the universal nature of stellar rotation distributions. Employing two different gyrochronology methods, we find an age of 146{sub −14}{sup +13} Myr for the cluster. Using the same techniques, we infer an age ofmore » 134{sub −10}{sup +9} Myr for the Pleiades measured from existing literature rotation periods. These rotation-derived ages agree with independently determined cluster ages based on the lithium depletion boundary technique. Additionally, we evaluate different gyrochronology models and quantify levels of agreement between the models and the Blanco 1/Pleiades rotation period distributions, including incorporating the rotation distributions of clusters at ages up to 1.1 Gyr. We find the Skumanich-like spin-down rate sufficiently describes the rotation evolution of stars hotter than the Sun; however, we find cooler stars rotating faster than predicted by a Skumanich law, suggesting a mass dependence in the efficiency of stellar angular momentum loss rate. Finally, we compare the Blanco 1 and Pleiades rotation period distributions to available nonlinear angular momentum evolution models. We find they require a significant mass dependence on the initial rotation rate of solar-type stars to reproduce the observed range of rotation periods at a given stellar mass and are furthermore unable to predict the observed over-density of stars along the upper envelope of the clusters' rotation distributions.« less

VizieR Online Data Catalog: 1876 open clusters multimembership catalog (Sampedro+, 2017)

NASA Astrophysics Data System (ADS)

Sampedro, L.; Dias, W. S.; Alfaro, E. J.; Monteiro, H.; Molino, A.

2017-10-01

We use version 3.5 of the New Optically Visible Open Clusters and Candidates catalogue (hereafter DAML02; Dias et al., 2002, Cat. B/ocl), to select a sample of 2167 open clusters to be analysed. The stellar positions and the proper motions are taken from the UCAC4 (Zacharias et al., 2013, Cat. I/322). The catalogue contains data for over 113 million stars (105 million of them with proper-motion data), and is complete down to magnitude R=16. The positional accuracy of the listed objects is about 15-100mas per coordinate, depending on the magnitude. Formal errors in proper motions range from about 1 to 10mas/yr, depending on the magnitude and the observational history. Systematic errors in the proper motions are estimated to be about 1-4mas/yr. (2 data files).

Tidal disruption of open clusters in their parent molecular clouds

NASA Technical Reports Server (NTRS)

Long, Kevin

1989-01-01

A simple model of tidal encounters has been applied to the problem of an open cluster in a clumpy molecular cloud. The parameters of the clumps are taken from the Blitz, Stark, and Long (1988) catalog of clumps in the Rosette molecular cloud. Encounters are modeled as impulsive, rectilinear collisions between Plummer spheres, but the tidal approximation is not invoked. Mass and binding energy changes during an encounter are computed by considering the velocity impulses given to individual stars in a random realization of a Plummer sphere. Mean rates of mass and binding energy loss are then computed by integrating over many encounters. Self-similar evolutionary calculations using these rates indicate that the disruption process is most sensitive to the cluster radius and relatively insensitive to cluster mass. The calculations indicate that clusters which are born in a cloud similar to the Rosette with a cluster radius greater than about 2.5 pc will not survive long enough to leave the cloud. The majority of clusters, however, have smaller radii and will survive the passage through their parent cloud.

Hydrogen-bonded ring closing and opening of protonated methanol clusters H(+)(CH3OH)(n) (n = 4-8) with the inert gas tagging.

PubMed

Li, Ying-Cheng; Hamashima, Toru; Yamazaki, Ryoko; Kobayashi, Tomohiro; Suzuki, Yuta; Mizuse, Kenta; Fujii, Asuka; Kuo, Jer-Lai

2015-09-14

The preferential hydrogen bond (H-bond) structures of protonated methanol clusters, H(+)(MeOH)n, in the size range of n = 4-8, were studied by size-selective infrared (IR) spectroscopy in conjunction with density functional theory calculations. The IR spectra of bare clusters were compared with those with the inert gas tagging by Ar, Ne, and N2, and remarkable changes in the isomer distribution with the tagging were found for clusters with n≥ 5. The temperature dependence of the isomer distribution of the clusters was calculated by the quantum harmonic superposition approach. The observed spectral changes with the tagging were well interpreted by the fall of the cluster temperature with the tagging, which causes the transfer of the isomer distribution from the open and flexible H-bond network types to the closed and rigid ones. Anomalous isomer distribution with the tagging, which has been recently found for protonated water clusters, was also found for H(+)(MeOH)5. The origin of the anomaly was examined by the experiments on its carrier gas dependence.

Comparing cluster-level dynamic treatment regimens using sequential, multiple assignment, randomized trials: Regression estimation and sample size considerations.

PubMed

NeCamp, Timothy; Kilbourne, Amy; Almirall, Daniel

2017-08-01

Cluster-level dynamic treatment regimens can be used to guide sequential treatment decision-making at the cluster level in order to improve outcomes at the individual or patient-level. In a cluster-level dynamic treatment regimen, the treatment is potentially adapted and re-adapted over time based on changes in the cluster that could be impacted by prior intervention, including aggregate measures of the individuals or patients that compose it. Cluster-randomized sequential multiple assignment randomized trials can be used to answer multiple open questions preventing scientists from developing high-quality cluster-level dynamic treatment regimens. In a cluster-randomized sequential multiple assignment randomized trial, sequential randomizations occur at the cluster level and outcomes are observed at the individual level. This manuscript makes two contributions to the design and analysis of cluster-randomized sequential multiple assignment randomized trials. First, a weighted least squares regression approach is proposed for comparing the mean of a patient-level outcome between the cluster-level dynamic treatment regimens embedded in a sequential multiple assignment randomized trial. The regression approach facilitates the use of baseline covariates which is often critical in the analysis of cluster-level trials. Second, sample size calculators are derived for two common cluster-randomized sequential multiple assignment randomized trial designs for use when the primary aim is a between-dynamic treatment regimen comparison of the mean of a continuous patient-level outcome. The methods are motivated by the Adaptive Implementation of Effective Programs Trial which is, to our knowledge, the first-ever cluster-randomized sequential multiple assignment randomized trial in psychiatry.

Influence of fiber packing structure on permeability

NASA Technical Reports Server (NTRS)

Cai, Zhong; Berdichevsky, Alexander L.

1993-01-01

The study on the permeability of an aligned fiber bundle is the key building block in modeling the permeability of advanced woven and braided preforms. Available results on the permeability of fiber bundles in the literature show that a substantial difference exists between numerical and analytical calculations on idealized fiber packing structures, such as square and hexagonal packing, and experimental measurements on practical fiber bundles. The present study focuses on the variation of the permeability of a fiber bundle under practical process conditions. Fiber bundles are considered as containing openings and fiber clusters within the bundle. Numerical simulations on the influence of various openings on the permeability were conducted. Idealized packing structures are used, but with introduced openings distributed in different patterns. Both longitudinal and transverse flow are considered. The results show that openings within the fiber bundle have substantial effect on the permeability. In the longitudinal flow case, the openings become the dominant flow path. In the transverse flow case, the fiber clusters reduce the gap sizes among fibers. Therefore the permeability is greatly influenced by these openings and clusters, respectively. In addition to the porosity or fiber volume fraction, which is commonly used in the permeability expression, another fiber bundle status parameter, the ultimate fiber volume fraction, is introduced to capture the disturbance within a fiber bundle.

Finding approximate gene clusters with Gecko 3.

PubMed

Winter, Sascha; Jahn, Katharina; Wehner, Stefanie; Kuchenbecker, Leon; Marz, Manja; Stoye, Jens; Böcker, Sebastian

2016-11-16

Gene-order-based comparison of multiple genomes provides signals for functional analysis of genes and the evolutionary process of genome organization. Gene clusters are regions of co-localized genes on genomes of different species. The rapid increase in sequenced genomes necessitates bioinformatics tools for finding gene clusters in hundreds of genomes. Existing tools are often restricted to few (in many cases, only two) genomes, and often make restrictive assumptions such as short perfect conservation, conserved gene order or monophyletic gene clusters. We present Gecko 3, an open-source software for finding gene clusters in hundreds of bacterial genomes, that comes with an easy-to-use graphical user interface. The underlying gene cluster model is intuitive, can cope with low degrees of conservation as well as misannotations and is complemented by a sound statistical evaluation. To evaluate the biological benefit of Gecko 3 and to exemplify our method, we search for gene clusters in a dataset of 678 bacterial genomes using Synechocystis sp. PCC 6803 as a reference. We confirm detected gene clusters reviewing the literature and comparing them to a database of operons; we detect two novel clusters, which were confirmed by publicly available experimental RNA-Seq data. The computational analysis is carried out on a laptop computer in <40 min. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

How Much Flux does a Flux Transfer Event Transfer?

NASA Astrophysics Data System (ADS)

Fear, R. C.; Trenchi, L.; Coxon, J.; Milan, S. E.

2016-12-01

Flux transfer events are bursts of reconnection at the dayside magnetopause, which give rise to characteristic signatures that are observed by a range of magnetospheric/ionospheric instrumentation. Spacecraft situated near the magnetopause observe a bipolar variation in the component of the magnetic field normal to the magnetopause (BN); auroral instrumentation (either ground- or space-based) observe poleward moving auroral forms which indicate the convection of newly-opened flux into the polar cap, and ionospheric radars similarly observe pulsed ionospheric flows or poleward moving radar auroral forms. One outstanding problem is the fact that there is a fundamental mismatch between the estimates of the flux that is opened by each flux transfer event - in other words, their overall significance in the Dungey cycle. Spacecraft-based estimates of the flux content of individual FTEs correspond to each event transferring flux equivalent to approximately 1% of the open flux in the magnetosphere, whereas studies based on global-scale radar and auroral observations suggest this figure could be more like 10%. In the former case, flux transfer events would be a minor detail in the Dungey cycle, but in the latter they could be its main driver. We present observations of a conjunction between flux transfer event signatures observed by the Cluster spacecraft, and pulsed ionospheric flows observed by the SuperDARN network on the 8th February 2002. Over the course of an hour, a similar number of FTE signatures were observed by Cluster (at 13 MLT) and the Prince George radar (at 7 MLT). We argue that the reason for the existing mismatch in flux estimates is that implicit assumptions about flux transfer event structure lead to a major underestimate of the flux content based on spacecraft observations. If these assumptions are removed, a much better match is found.

Galactic disk dynamical tracers: Open clusters and the local Milky Way rotation curve and velocity field

NASA Astrophysics Data System (ADS)

Frinchaboy, Peter Michael, III

Establishing the rotation curve of the Milky Way is one of the fundamental contributions needed to understand the Galaxy and its mass distribution. We have undertaken a systematic spectroscopic survey of open star clusters which can serve as tracers of Galactic disk dynamics. We report on our initial sample of 67 clusters for which the Hydra multi-fiber spectrographs on the WIYN and Blanco telescopes have delivered ~1-2 km s -1 radial velocities (RVs) of many dozens of stars in the fields of each cluster, which are used to derive cluster membership and bulk cluster kinematics when combined with Tycho-2 proper motions. The clusters selected for study have a broad spatial distribution in order to be sensitive to the disk velocity field in all Galactic quadrants and across a Galactocentric radius range as much as 3.0 kpc from the solar circle. Through analysis of the cluster sample, we find (1) the rotation velocity of the Local Standard of Rest (LSR) is [Special characters omitted.] km s -1 , (2 ) the local rotation curve is declining with radius having a slope of -9.1 km s -1 kpc -1 , (3) we find (using R 0 = 8.5 kpc) the following Galactic parameters: A = 17.0 km s -1 kpc -1 and B = -8.9 km s -1 kpc -1 , which using a flat rotation curve and our determined values for the rotation velocity of the LSR yields a Galaxy mass within 1.5 R 0 of M = 1.4 ± 0.2 × 10 11 [Spe cial characters omitted.] and a M/L of 9 [Special characters omitted.] . We also explore the distribution of the local velocity field and find evidence for non- circular motion due to the spiral arms. Additionally, a number of outer disk ( R gc > 12 kpc) open clusters, including Be29 and Sa1, are studied that have potentially critical leverage on radial, age and metallicity gradients in the outer Galactic disk. We find that the measured kinematics of Sa1 and Be29 are consistent with being associated with the Galactic anticenter stellar structure (GASS; or Monoceros stream), which points to a possible "accretion" origin for these and possibly other outer disk open clusters, if one believes that GASS represents an accreting dwarf galaxy system.

Pilot Study of an Open-source Image Analysis Software for Automated Screening of Conventional Cervical Smears.

PubMed

Sanyal, Parikshit; Ganguli, Prosenjit; Barui, Sanghita; Deb, Prabal

2018-01-01

The Pap stained cervical smear is a screening tool for cervical cancer. Commercial systems are used for automated screening of liquid based cervical smears. However, there is no image analysis software used for conventional cervical smears. The aim of this study was to develop and test the diagnostic accuracy of a software for analysis of conventional smears. The software was developed using Python programming language and open source libraries. It was standardized with images from Bethesda Interobserver Reproducibility Project. One hundred and thirty images from smears which were reported Negative for Intraepithelial Lesion or Malignancy (NILM), and 45 images where some abnormality has been reported, were collected from the archives of the hospital. The software was then tested on the images. The software was able to segregate images based on overall nuclear: cytoplasmic ratio, coefficient of variation (CV) in nuclear size, nuclear membrane irregularity, and clustering. 68.88% of abnormal images were flagged by the software, as well as 19.23% of NILM images. The major difficulties faced were segmentation of overlapping cell clusters and separation of neutrophils. The software shows potential as a screening tool for conventional cervical smears; however, further refinement in technique is required.

Direct synthesis of antimicrobial coatings based on tailored bi-elemental nanoparticles

NASA Astrophysics Data System (ADS)

Benetti, Giulio; Cavaliere, Emanuele; Canteri, Adalberto; Landini, Giulia; Rossolini, Gian Maria; Pallecchi, Lucia; Chiodi, Mirco; Van Bael, Margriet J.; Winckelmans, Naomi; Bals, Sara; Gavioli, Luca

2017-03-01

Ultrathin coatings based on bi-elemental nanoparticles (NPs) are very promising to limit the surface-related spread of bacterial pathogens, particularly in nosocomial environments. However, tailoring the synthesis, composition, adhesion to substrate, and antimicrobial spectrum of the coating is an open challenge. Herein, we report on a radically new nanostructured coating, obtained by a one-step gas-phase deposition technique, and composed of bi-elemental Janus type Ag/Ti NPs. The NPs are characterized by a cluster-in-cluster mixing phase with metallic Ag nano-crystals embedded in amorphous TiO2 and present a promising antimicrobial activity including also multidrug resistant strains. We demonstrate the flexibility of the method to tune the embedded Ag nano-crystals dimension, the total relative composition of the coating, and the substrate type, opening the possibility of tailoring the dimension, composition, antimicrobial spectrum, and other physical/chemical properties of such multi-elemental systems. This work is expected to significantly spread the range of applications of NPs coatings, not only as an effective tool in the prevention of healthcare-associated infections but also in other technologically relevant fields like sensors or nano-/micro joining.

X-ray Source Populations in Old Open Clusters - Collinder 261

NASA Astrophysics Data System (ADS)

Vats, Smriti

2014-11-01

We are carrying out an X-ray survey of old open clusters (OCs) with the Chandra X-ray Observatory. Single old stars emit very faint X-rays, making X-rays produced by mass transfer in CVs, or by rapid rotation of the stars in tidally-locked, detached binaries detectable, without contamination from single stars. By comparing properties of interacting binaries in different environments, we aim to study binary evolution, and how dynamical encounters with other cluster members affect it. Collinder (Cr) 261 is an old OC(~7Gyr), with one of the richest populations inferred, of close binary populations and blue stragglers of all OCs. We will present the first results, detailing the X-ray population of Cr 261, in conjugation with other OCs, and in comparison with populations in globular clusters.

An investigation of 11 previously unstudied open star clusters

NASA Astrophysics Data System (ADS)

Tadross, A. L.

2009-02-01

The main astrophysical properties of 11 previously unstudied open star clusters are probed with JHK Near-IR (2MASS) photometry of Cutri et al. [Cutri, R., et al., 2003. The IRSA 2MASS All-sky Point Source Catolog, NASA/IPAC Infrared Science Archive] and proper motions (NOMAD) astrometry of Zacharias et al. [Zacharias, N., Monet, D., Levine, S., Urban, S., Gaume, R., Wycoff, G., 2004. American Astro. Soc. Meeting 36, 1418]. The fundamental parameters have been derived for IC (1434, 2156); King (17, 18, 20, 23, 26); and Dias (2, 3, 4, 7, 8), for which no prior parameters are available in the literature. The clusters' centers coordinates and angular diameters are re-determined, while ages, distances, and color excesses for these clusters are estimated here for the first time.

Dynamic Extension of a Virtualized Cluster by using Cloud Resources

NASA Astrophysics Data System (ADS)

Oberst, Oliver; Hauth, Thomas; Kernert, David; Riedel, Stephan; Quast, Günter

2012-12-01

The specific requirements concerning the software environment within the HEP community constrain the choice of resource providers for the outsourcing of computing infrastructure. The use of virtualization in HPC clusters and in the context of cloud resources is therefore a subject of recent developments in scientific computing. The dynamic virtualization of worker nodes in common batch systems provided by ViBatch serves each user with a dynamically virtualized subset of worker nodes on a local cluster. Now it can be transparently extended by the use of common open source cloud interfaces like OpenNebula or Eucalyptus, launching a subset of the virtual worker nodes within the cloud. This paper demonstrates how a dynamically virtualized computing cluster is combined with cloud resources by attaching remotely started virtual worker nodes to the local batch system.

Shared Memory Parallelization of an Implicit ADI-type CFD Code

NASA Technical Reports Server (NTRS)

Hauser, Th.; Huang, P. G.

1999-01-01

A parallelization study designed for ADI-type algorithms is presented using the OpenMP specification for shared-memory multiprocessor programming. Details of optimizations specifically addressed to cache-based computer architectures are described and performance measurements for the single and multiprocessor implementation are summarized. The paper demonstrates that optimization of memory access on a cache-based computer architecture controls the performance of the computational algorithm. A hybrid MPI/OpenMP approach is proposed for clusters of shared memory machines to further enhance the parallel performance. The method is applied to develop a new LES/DNS code, named LESTool. A preliminary DNS calculation of a fully developed channel flow at a Reynolds number of 180, Re(sub tau) = 180, has shown good agreement with existing data.

Yellow supergiants in open clusters

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sowell, J.R.

1986-01-01

Superluminous giant stars (SLGs) have been reported in young globular clusters in the Large Magellanic Cloud (LMC). These stars appear to be in the post-asymptotic-giant-branch phase of evolution. This program was an investigation of galactic SLG candidates in open clusters, which are more like the LMC young globular clusters. These were chosen because luminosity, mass, and age determinations can be made for members since cluster distances and interstellar reddenings are known. Color magnitude diagrams were searched for candidates, using the same selection criteria as for SLGs in the LMC. Classification spectra were obtained of 115 program stars from McGraw-Hill Observatorymore » and of 68 stars from Cerro Tololo Inter-American Observatory Chile. These stars were visually classified on the MK system using spectral scans of standard stars taken at the respective observations. Published information was combined with this program's data for 83 stars in 30 clusters. Membership probabilities were assigned to these stars, and the clusters were analyzed according to age. It was seen that the intrinsically brightest supergiants are found in the youngest clusters. With increasing cluster age, the absolute luminosities attained by the supergiants decline. Also, it appears that the evolutionary tracks of luminosity class II stars are more similar to those of class I than of class III.« less

The X-ray properties of the young open cluster around alpha Persei

NASA Technical Reports Server (NTRS)

Randich, S.; Schmitt, J. H. M. M.; Prosser, C. F.; Stauffer, J. R.

1995-01-01

The observations of the 50 Myr old alpha Persei open cluster, performed by the Rosat's position sensitive proportional counter (PSPC), are discussed. The X-ray observations cover an area of about 10 sq deg. A total of 160 X-ray sources were detected. The comparison between the X-ray luminosity distribution functions of the alpha Persei sample and the Pleiades indicated that F and G-type stars in the alpha Persei are more X-ray luminous than their older counterparts in the Pleiades. No significant difference was found between the distributions of the K and M-type dwarfs in the two clusters.

Parallel and Scalable Clustering and Classification for Big Data in Geosciences

NASA Astrophysics Data System (ADS)

Riedel, M.

2015-12-01

Machine learning, data mining, and statistical computing are common techniques to perform analysis in earth sciences. This contribution will focus on two concrete and widely used data analytics methods suitable to analyse 'big data' in the context of geoscience use cases: clustering and classification. From the broad class of available clustering methods we focus on the density-based spatial clustering of appliactions with noise (DBSCAN) algorithm that enables the identification of outliers or interesting anomalies. A new open source parallel and scalable DBSCAN implementation will be discussed in the light of a scientific use case that detects water mixing events in the Koljoefjords. The second technique we cover is classification, with a focus set on the support vector machines algorithm (SVMs), as one of the best out-of-the-box classification algorithm. A parallel and scalable SVM implementation will be discussed in the light of a scientific use case in the field of remote sensing with 52 different classes of land cover types.

Particle-Size-Exclusion Clogging Regimes in Porous Media

NASA Astrophysics Data System (ADS)

Gerber, G.; Rodts, S.; Aimedieu, P.; Faure, P.; Coussot, P.

2018-04-01

From observations of the progressive deposition of noncolloidal particles by geometrical exclusion effects inside a 3D model porous medium, we get a complete dynamic view of particle deposits over a full range of regimes from transport over a long distance to clogging and caking. We show that clogging essentially occurs in the form of an accumulation of elements in pore size clusters, which ultimately constitute regions avoided by the flow. The clusters are dispersed in the medium, and their concentration (number per volume) decreases with the distance from the entrance; caking is associated with the final stage of this effect (for a critical cluster concentration at the entrance). A simple probabilistic model, taking into account the impact of clogging on particle transport, allows us to quantitatively predict all these trends up to a large cluster concentration, based on a single parameter: the clogging probability, which is a function of the confinement ratio. This opens the route towards a unification of the different fields of particle transport, clogging, caking, and filtration.

Cluster Analysis of Longidorus Species (Nematoda: Longidoridae), a New Approach in Species Identification

PubMed Central

Ye, Weimin; Robbins, R. T.

2004-01-01

Hierarchical cluster analysis based on female morphometric character means including body length, distance from vulva opening to anterior end, head width, odontostyle length, esophagus length, body width, tail length, and tail width were used to examine the morphometric relationships and create dendrograms for (i) 62 populations belonging to 9 Longidorus species from Arkansas, (ii) 137 published Longidorus species, and (iii) 137 published Longidorus species plus 86 populations of 16 Longidorus species from Arkansas and various other locations by using JMP 4.02 software (SAS Institute, Cary, NC). Cluster analysis dendograms visually illustrated the grouping and morphometric relationships of the species and populations. It provided a computerized statistical approach to assist by helping to identify and distinguish species, by indicating morphometric relationships among species, and by assisting with new species diagnosis. The preliminary species identification can be accomplished by running cluster analysis for unknown species together with the data matrix of known published Longidorus species. PMID:19262809

Explaining the unexplainable - the impact of physicians' attitude towards litigation on their incident disclosure behaviour.

PubMed

Renkema, Erik; Broekhuis, Manda H; Ahaus, Kees

2014-10-01

This study aims to provide in-depth insight into the emotions and thoughts of physicians towards malpractice litigation, and how these relate to their incident disclosure behaviour. Thirty-one Dutch physicians were interviewed and completed short questionnaires regarding malpractice litigation. We used hierarchical cluster analysis to identify physician clusters. Additional qualitative data were analysed. Physicians vary largely in their attitude towards malpractice litigation, and their attitude is not straightforward related to their disclosure behaviour. Based on their responses physicians could be divided into two clusters: one with a positive and one with a negative attitude. Physicians with a negative attitude showed often, but also 6 out of 15 not, a reluctance to disclose, whereas the majority in the positive attitude cluster (12 out of 16) showed no reluctance. If, what and how physicians disclose incidents depends on a complex interplay of their emotions and thoughts regarding litigation, and not only on their fear of litigation as many studies assume. Due to the variation among physicians in their litigation attitude and behaviour in terms of incident disclosure the oft-heard call for 'openness' about medical incidents will not be easy to achieve. A coaching system in which physicians can share and discuss their differing attitudes and disclosure principles, teaching medical students and junior physicians about disclosure, and explaining how to organize emotional and legal support for oneself in case of litigation could decrease stress feelings and support open disclosure behaviour. © 2014 John Wiley & Sons, Ltd.

New Cepheid variables in the young open clusters Berkeley 51 and Berkeley 55

NASA Astrophysics Data System (ADS)

Lohr, M. E.; Negueruela, I.; Tabernero, H. M.; Clark, J. S.; Lewis, F.; Roche, P.

2018-05-01

As part of a wider investigation of evolved massive stars in Galactic open clusters, we have spectroscopically identified three candidate classical Cepheids in the little-studied clusters Berkeley 51, Berkeley 55 and NGC 6603. Using new multi-epoch photometry, we confirm that Be 51 #162 and Be 55 #107 are bona fide Cepheids, with pulsation periods of 9.83±0.01 d and 5.850±0.005 d respectively, while NGC 6603 star W2249 does not show significant photometric variability. Using the period-luminosity relationship for Cepheid variables, we determine a distance to Be 51 of 5.3^{+1.0}_{-0.8} kpc and an age of 44^{+9}_{-8} Myr, placing it in a sparsely-attested region of the Perseus arm. For Be 55, we find a distance of 2.2±0.3 kpc and age of 63^{+12}_{-11} Myr, locating the cluster in the Local arm. Taken together with our recent discovery of a long-period Cepheid in the starburst cluster VdBH222, these represent an important increase in the number of young, massive Cepheids known in Galactic open clusters. We also consider new Gaia (data release 2) parallaxes and proper motions for members of Be 51 and Be 55; the uncertainties on the parallaxes do not allow us to refine our distance estimates to these clusters, but the well-constrained proper motion measurements furnish further confirmation of cluster membership. However, future final Gaia parallaxes for such objects should provide valuable independent distance measurements, improving the calibration of the period-luminosity relationship, with implications for the distance ladder out to cosmological scales.

OPEN CLUSTERS AS PROBES OF THE GALACTIC MAGNETIC FIELD. I. CLUSTER PROPERTIES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hoq, Sadia; Clemens, D. P., E-mail: shoq@bu.edu, E-mail: clemens@bu.edu

2015-10-15

Stars in open clusters are powerful probes of the intervening Galactic magnetic field via background starlight polarimetry because they provide constraints on the magnetic field distances. We use 2MASS photometric data for a sample of 31 clusters in the outer Galaxy for which near-IR polarimetric data were obtained to determine the cluster distances, ages, and reddenings via fitting theoretical isochrones to cluster color–magnitude diagrams. The fitting approach uses an objective χ{sup 2} minimization technique to derive the cluster properties and their uncertainties. We found the ages, distances, and reddenings for 24 of the clusters, and the distances and reddenings formore » 6 additional clusters that were either sparse or faint in the near-IR. The derived ranges of log(age), distance, and E(B−V) were 7.25–9.63, ∼670–6160 pc, and 0.02–1.46 mag, respectively. The distance uncertainties ranged from ∼8% to 20%. The derived parameters were compared to previous studies, and most cluster parameters agree within our uncertainties. To test the accuracy of the fitting technique, synthetic clusters with 50, 100, or 200 cluster members and a wide range of ages were fit. These tests recovered the input parameters within their uncertainties for more than 90% of the individual synthetic cluster parameters. These results indicate that the fitting technique likely provides reliable estimates of cluster properties. The distances derived will be used in an upcoming study of the Galactic magnetic field in the outer Galaxy.« less

Psi4 1.1: An Open-Source Electronic Structure Program Emphasizing Automation, Advanced Libraries, and Interoperability.

PubMed

Parrish, Robert M; Burns, Lori A; Smith, Daniel G A; Simmonett, Andrew C; DePrince, A Eugene; Hohenstein, Edward G; Bozkaya, Uğur; Sokolov, Alexander Yu; Di Remigio, Roberto; Richard, Ryan M; Gonthier, Jérôme F; James, Andrew M; McAlexander, Harley R; Kumar, Ashutosh; Saitow, Masaaki; Wang, Xiao; Pritchard, Benjamin P; Verma, Prakash; Schaefer, Henry F; Patkowski, Konrad; King, Rollin A; Valeev, Edward F; Evangelista, Francesco A; Turney, Justin M; Crawford, T Daniel; Sherrill, C David

2017-07-11

Psi4 is an ab initio electronic structure program providing methods such as Hartree-Fock, density functional theory, configuration interaction, and coupled-cluster theory. The 1.1 release represents a major update meant to automate complex tasks, such as geometry optimization using complete-basis-set extrapolation or focal-point methods. Conversion of the top-level code to a Python module means that Psi4 can now be used in complex workflows alongside other Python tools. Several new features have been added with the aid of libraries providing easy access to techniques such as density fitting, Cholesky decomposition, and Laplace denominators. The build system has been completely rewritten to simplify interoperability with independent, reusable software components for quantum chemistry. Finally, a wide range of new theoretical methods and analyses have been added to the code base, including functional-group and open-shell symmetry adapted perturbation theory, density-fitted coupled cluster with frozen natural orbitals, orbital-optimized perturbation and coupled-cluster methods (e.g., OO-MP2 and OO-LCCD), density-fitted multiconfigurational self-consistent field, density cumulant functional theory, algebraic-diagrammatic construction excited states, improvements to the geometry optimizer, and the "X2C" approach to relativistic corrections, among many other improvements.

New Asteroseismic Scaling Relations Based on the Hayashi Track Relation Applied to Red Giant Branch Stars in NGC 6791 and NGC 6819

NASA Astrophysics Data System (ADS)

Wu, T.; Li, Y.; Hekker, S.

2014-01-01

Stellar mass M, radius R, and gravity g are important basic parameters in stellar physics. Accurate values for these parameters can be obtained from the gravitational interaction between stars in multiple systems or from asteroseismology. Stars in a cluster are thought to be formed coevally from the same interstellar cloud of gas and dust. The cluster members are therefore expected to have some properties in common. These common properties strengthen our ability to constrain stellar models and asteroseismically derived M, R, and g when tested against an ensemble of cluster stars. Here we derive new scaling relations based on a relation for stars on the Hayashi track (\\sqrt{T_eff} \\sim g^pR^q) to determine the masses and metallicities of red giant branch stars in open clusters NGC 6791 and NGC 6819 from the global oscillation parameters Δν (the large frequency separation) and νmax (frequency of maximum oscillation power). The Δν and νmax values are derived from Kepler observations. From the analysis of these new relations we derive: (1) direct observational evidence that the masses of red giant branch stars in a cluster are the same within their uncertainties, (2) new methods to derive M and z of the cluster in a self-consistent way from Δν and νmax, with lower intrinsic uncertainties, and (3) the mass dependence in the Δν - νmax relation for red giant branch stars.

Parcellation of left parietal tool representations by functional connectivity

PubMed Central

Garcea, Frank E.; Z. Mahon, Bradford

2014-01-01

Manipulating a tool according to its function requires the integration of visual, conceptual, and motor information, a process subserved in part by left parietal cortex. How these different types of information are integrated and how their integration is reflected in neural responses in the parietal lobule remains an open question. Here, participants viewed images of tools and animals during functional magnetic resonance imaging (fMRI). K-means clustering over time series data was used to parcellate left parietal cortex into subregions based on functional connectivity to a whole brain network of regions involved in tool processing. One cluster, in the inferior parietal cortex, expressed privileged functional connectivity to the left ventral premotor cortex. A second cluster, in the vicinity of the anterior intraparietal sulcus, expressed privileged functional connectivity with the left medial fusiform gyrus. A third cluster in the superior parietal lobe expressed privileged functional connectivity with dorsal occipital cortex. Control analyses using Monte Carlo style permutation tests demonstrated that the clustering solutions were outside the range of what would be observed based on chance ‘lumpiness’ in random data, or mere anatomical proximity. Finally, hierarchical clustering analyses were used to formally relate the resulting parcellation scheme of left parietal tool representations to previous work that has parcellated the left parietal lobule on purely anatomical grounds. These findings demonstrate significant heterogeneity in the functional organization of manipulable object representations in left parietal cortex, and outline a framework that generates novel predictions about the causes of some forms of upper limb apraxia. PMID:24892224

An explicitly spin-free compact open-shell coupled cluster theory using a multireference combinatoric exponential ansatz: formal development and pilot applications.

PubMed

Datta, Dipayan; Mukherjee, Debashis

2009-07-28

In this paper, we present a comprehensive account of an explicitly spin-free compact state-universal multireference coupled cluster (CC) formalism for computing the state energies of simple open-shell systems, e.g., doublets and biradicals, where the target open-shell states can be described by a few configuration state functions spanning a model space. The cluster operators in this formalism are defined in terms of the spin-free unitary generators with respect to the common closed-shell component of all model functions (core) as vacuum. The spin-free cluster operators are either closed-shell-like n hole-n particle excitations (denoted by T(mu)) or involve excitations from the doubly occupied (nonvalence) orbitals to the singly occupied (valence) orbitals (denoted by S(e)(mu)). In addition, there are cluster operators with exchange spectator scatterings involving the valence orbitals (denoted by S(re)(mu)). We propose a new multireference cluster expansion ansatz for the wave operator with the above generally noncommuting cluster operators which essentially has the same physical content as the Jeziorski-Monkhorst ansatz with the commuting cluster operators defined in the spin-orbital basis. The T(mu) operators in our ansatz are taken to commute with all other operators, while the S(e)(mu) and S(re)(mu) operators are allowed to contract among themselves through the spectator valence orbitals. An important innovation of this ansatz is the choice of an appropriate automorphic factor accompanying each contracted composite of cluster operators in order to ensure that each distinct excitation generated by this composite appears only once in the wave operator. The resulting CC equations consist of two types of terms: a "direct" term and a "normalization" term containing the effective Hamiltonian operator. It is emphasized that the direct term is almost quartic in the cluster amplitudes, barring only a handful of terms and termination of the normalization term depends on the valence rank of the effective Hamiltonian operator and the excitation rank of the cluster operators at which the theory is truncated. Illustrative applications are presented by computing the state energies of neutral doublet radicals and doublet molecular cations and ionization energies of neutral molecules and comparing our results with the other open-shell CC theories, benchmark full CI results (when available) in the same basis, and the experimental results. Highly encouraging results show the efficacy of the method.

Identifying nearby field T dwarfs in the UKIDSS Galactic Clusters Survey

NASA Astrophysics Data System (ADS)

Lodieu, N.; Burningham, B.; Hambly, N. C.; Pinfield, D. J.

2009-07-01

We present the discovery of two new late-T dwarfs identified in the UKIRT Infrared Deep Sky Survey (UKIDSS) Galactic Clusters Survey (GCS) Data Release 2 (DR2). These T dwarfs are nearby old T dwarfs along the line of sight to star-forming regions and open clusters targeted by the UKIDSS GCS. They are found towards the αPer cluster and Orion complex, respectively, from a search in 54deg2 surveyed in five filters. Photometric candidates were picked up in two-colour diagrams, in a very similar manner to candidates extracted from the UKIDSS Large Area Survey (LAS) but taking advantage of the Z filter employed by the GCS. Both candidates exhibit near-infrared J-band spectra with strong methane and water absorption bands characteristic of late-T dwarfs. We derive spectral types of T6.5 +/- 0.5 and T7 +/- 1 and estimate photometric distances less than 50 pc for UGCS J030013.86+490142.5 and UGCS J053022.52-052447.4, respectively. The space density of T dwarfs found in the GCS seems consistent with discoveries in the larger areal coverage of the UKIDSS LAS, indicating one T dwarf in 6-11deg2. The final area surveyed by the GCS, 1000deg2 in five passbands, will allow expansion of the LAS search area by 25 per cent, increase the probability of finding ultracool brown dwarfs, and provide optimal estimates of contamination by old field brown dwarfs in deep surveys to identify such objects in open clusters and star-forming regions. Based on observations made with the United Kingdom Infrared Telescope, operated by the Joint Astronomy Centre on behalf of the U.K. Science Technology and Facility Council. E-mail: nlodieu@iac.es

Mantis BT Cluster Support

DOE Office of Scientific and Technical Information (OSTI.GOV)

Riot, V.

2009-06-05

The software is a modidication to the Mantis BT V1.5 open source application provided by the mantis BT group to support cluster web servers. It also provides various cosmetic modifications used a LLNL.

Classification of patients based on their evaluation of hospital outcomes: cluster analysis following a national survey in Norway

PubMed Central

2013-01-01

Background A general trend towards positive patient-reported evaluations of hospitals could be taken as a sign that most patients form a homogeneous, reasonably pleased group, and consequently that there is little need for quality improvement. The objective of this study was to explore this assumption by identifying and statistically validating clusters of patients based on their evaluation of outcomes related to overall satisfaction, malpractice and benefit of treatment. Methods Data were collected using a national patient-experience survey of 61 hospitals in the 4 health regions in Norway during spring 2011. Postal questionnaires were mailed to 23,420 patients after their discharge from hospital. Cluster analysis was performed to identify response clusters of patients, based on their responses to single items about overall patient satisfaction, benefit of treatment and perception of malpractice. Results Cluster analysis identified six response groups, including one cluster with systematically poorer evaluation across outcomes (18.5% of patients) and one small outlier group (5.3%) with very poor scores across all outcomes. One-Way ANOVA with post-hoc tests showed that most differences between the six response groups on the three outcome items were significant. The response groups were significantly associated with nine patient-experience indicators (p < 0.001), and all groups were significantly different from each of the other groups on a majority of the patient-experience indicators. Clusters were significantly associated with age, education, self-perceived health, gender, and the degree to write open comments in the questionnaire. Conclusions The study identified five response clusters with distinct patient-reported outcome scores, in addition to a heterogeneous outlier group with very poor scores across all outcomes. The outlier group and the cluster with systematically poorer evaluation across outcomes comprised almost one-quarter of all patients, clearly demonstrating the need to tailor quality initiatives and improve patient-perceived quality in hospitals. More research on patient clustering in patient evaluation is needed, as well as standardization of methodology to increase comparability across studies. PMID:23433450

Towards a comprehensive knowledge of the open cluster Haffner 9

NASA Astrophysics Data System (ADS)

Piatti, Andrés E.

2017-03-01

We turn our attention to Haffner 9, a Milky Way open cluster whose previous fundamental parameter estimates are far from being in agreement. In order to provide with accurate estimates, we present high-quality Washington CT1 and Johnson BVI photometry of the cluster field. We put particular care in statistically cleaning the colour-magnitude diagrams (CMDs) from field star contamination, which was found a common source in previous works for the discordant fundamental parameter estimates. The resulting cluster CMD fiducial features were confirmed from a proper motion membership analysis. Haffner 9 is a moderately young object (age ∼350 Myr), placed in the Perseus arm - at a heliocentric distance of ∼3.2 kpc - , with a lower limit for its present mass of ∼160 M⊙ and of nearly metal solar content. The combination of the cluster structural and fundamental parameters suggest that it is in an advanced stage of internal dynamical evolution, possibly in the phase typical of those with mass segregation in their core regions. However, the cluster still keeps its mass function close to that of the Salpeter's law.

Disintegration of the Aged Open Cluster Berkeley 17

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bhattacharya, Souradeep; Vaidya, Kaushar; Mishra, Ishan

We present the analysis of the morphological shape of Berkeley 17, the oldest known open cluster (∼10 Gyr), using the probabilistic star counting of Pan-STARRS point sources, and confirm its core-tail shape, plus an antitail, previously detected with the 2MASS data. The stellar population, as diagnosed by the color–magnitude diagram and theoretical isochrones, shows many massive members in the clusters core, whereas there is a paucity of such members in both of the tails. This manifests mass segregation in this aged star cluster with the low-mass members being stripped away from the system. It has been claimed that Berkeley 17more » is associated with an excessive number of blue straggler candidates. A comparison of nearby reference fields indicates that about half of these may be field contamination.« less

WIYN OPEN CLUSTER STUDY. LV. ASTROMETRY AND MEMBERSHIP IN NGC 6819

DOE Office of Scientific and Technical Information (OSTI.GOV)

Platais, Imants; Gosnell, Natalie M.; Meibom, Soren

2013-08-01

We present proper motions and astrometric membership analysis for 15,750 stars around the intermediate-age open cluster NGC 6819. The accuracy of relative proper motions for well-measured stars ranges from {approx}0.2 mas yr{sup -1} within 10' of the cluster center to 1.1 mas yr{sup -1} outside this radius. In the proper motion vector-point diagram, the separation between the cluster members and field stars is convincing down to V {approx} 18 and within 10' from the cluster center. The formal sum of membership probabilities indicates a total of {approx}2500 cluster members down to V {approx} 22. We confirm the cluster membership ofmore » several variable stars, including some eclipsing binaries. The estimated absolute proper motion of NGC 6819 is {mu}{sub x}{sup abs}=-2.6{+-}0.5 and {mu}{sub y}{sup abs}=-4.2{+-}0.5 mas yr{sup -1}. A cross-identification between the proper motion catalog and a list of X-ray sources in the field of NGC 6819 resulted in a number of new likely optical counterparts, including a candidate CV. For the first time we show that there is significant differential reddening toward NGC 6819.« less

Flying Under the LiDAR: Relating Forest Structure to Bat Community Diversity

NASA Astrophysics Data System (ADS)

Swanson, A. C.; Weishampel, J. F.

2015-12-01

Bats are important to many ecological processes such as pollination, insect (and by proxy, disease) control, and seed dispersal and can be used to monitor ecosystem health. However, they are facing unprecedented extinction risks from habitat degradation as well as pressures from pathogens (e.g., white-nose syndrome) and wind turbines. LiDAR allows ecologists to measure structural variables of forested landscapes with increased precision and accuracy at broader spatial scales than previously possible. This study used airborne LiDAR to classify forest habitat/canopy structure at the Ordway-Swisher Biological Station (OSBS) in north central Florida. LiDAR data were acquired by the NEON airborne observation platform in summer 2014. OSBS consists of open-canopy pine savannas, closed-canopy hardwood hammocks, and seasonally wet prairies. Multiple forest structural parameters (e.g., mean, maximum, and standard deviation of height returns) were derived from LiDAR point clouds using the USDA software program FUSION. K-means clustering was used to segregate each 5x5 m raster across the ~3765 ha OSBS area into six different clusters based on the derived canopy metrics. Cluster averages for maximum, mean, and standard deviation of return heights ranged from 0 to 19.4 m, 0 to 15.3 m, and 0 to 3.0 m, respectively. To determine the relationships among these landscape-canopy features and bat species diversity and abundances, AnaBat II bat detectors were deployed from May to September in 2015 stratified by these distinct clusters. Bat calls were recorded from sunset to sunrise during each sampling period. Species were identified using AnalookW. A statistical regression model selection approach was performed in order to evaluate how forest attributes such as understory clutter, open regions, open and closed canopy, etc. influence bat communities. This knowledge provides a deeper understanding of habitat-species interactions to better manage survival of these species.

Investigation of Galactic open cluster remnants: the case of NGC 7193

NASA Astrophysics Data System (ADS)

de Souza Angelo, Mateus; Francisco Coelho dos Santos, João, Jr.; Barbosa Corradi, Wagner José; Ferreira de Souza Maia, Francisco; Piatti, Andrés Eduardo

2017-01-01

Galactic open clusters (OCs) that survive the early gas-expulsion phase are gradually destroyed over time by the action of disruptive dynamical processes. Their final evolutionary stages are characterized by a poorly populated concentration of stars called an open cluster remnant (OCR). This study is devoted to assessing the real physical nature of the OCR candidate NGC 7193. GMOS/Gemini spectroscopy of 53 stars in the inner target region were obtained to derive radial velocities and atmospheric parameters. We also employed photometric and proper motion data. The analysis method consists of the following steps: (i) analysis of the statistical resemblance between the cluster and a set of field samples with respect to the sequences defined in color-magnitude diagrams (CMDs); (ii) a 5-dimensional iterative exclusion routine was employed to identify outliers from kinematical and positional data; (iii) isochrone fitting to the Ks×(J-Ks) CMD of the remaining stars and the dispersion of spectral types along empirical sequences in the (J-H)×(H-Ks) diagram were checked. A group of stars was identified for which the mean heliocentric distance is compatible with that obtained via isochrone fitting and whose metallicities are compatible with each other. Fifteen of the member stars observed spectroscopically were identified together with another 19 probable members. Our results indicate that NGC 7193 is a genuine OCR, of a once very populous OC, for which the following parameters were derived: d = 501±46 pc, t=2.5+/-1.2 Gyr, < [Fe/H] >=-0.17+/-0.23 and E(B-V)=0.05+/-0.05. Its luminosity and mass functions show depletion of low mass stars, confirming the OCR is in a dynamically evolved state. Based on observations obtained at the Gemini Observatory, which is operated by the AURA under a cooperative agreement with the NSF on behalf of the Gemini partnership: NSF (United States), STFC (United Kingdom), NRC (Canada), CONICYT (Chile), ARC (Australia), CNPq (Brazil) and CONICET (Argentina).

CCD Photometry of the Open Cluster Tombaugh 5 in the Vilnius System

DTIC Science & Technology

2011-01-01

Collinder 428 (Laugalys et ai. 2007) and IC 361 (Zdanavicius et al. 2010), and four areas in the dark cloud LDN 935 at the North America and Pelican nebulae ...based on the Dobashi et a!. (2005) atlas of dark clouds (TGU numbers) and shows the positions of the nebulae Sh2-202, Sh2-205, vdB 14 and vdB 15, the

A Project to Demonstrate Incremental Improvements in a K-12 Career Education Program through an Exemplary Model. Final Financial Status and Performance Report.

ERIC Educational Resources Information Center

Northwestern Tri-County Intermediate Unit 5, Edinboro, PA.

A project was conducted based on the following three objectives: (1) demonstrate a regional plan for the implementation of an open entry-exit (flexible) career development program encompassing career awareness, career exploration, and career preparation; (2) expose each student to a range of career clusters within the context of his educational…

Optimising the Parallelisation of OpenFOAM Simulations

DTIC Science & Technology

2014-06-01

UNCLASSIFIED UNCLASSIFIED Optimising the Parallelisation of OpenFOAM Simulations Shannon Keough Maritime Division Defence...Science and Technology Organisation DSTO-TR-2987 ABSTRACT The OpenFOAM computational fluid dynamics toolbox allows parallel computation of...performance of a given high performance computing cluster with several OpenFOAM cases, running using a combination of MPI libraries and corresponding MPI

VizieR Online Data Catalog: CCD {Delta}a-photometry of 5 open clusters (Paunzen+, 2003)

NASA Astrophysics Data System (ADS)

Paunzen, E.; Pintado, O. I.; Maitzen, H. M.

2004-01-01

Observations of the five open clusters were performed with the Bochum 61cm (ESO-La Silla), the Helen-Sawyer-Hogg 61cm telescope (UTSO-Las Campanas Observatory), the 2.15m telescope at the Complejo Astronomico el Leoncito (CASLEO) and the L. Figl Observatory (FOA) with the 150cm telescope on Mt. Schopfl (Austria) using the multimode instrument OEFOSC (see the observation log in Table 1). (5 data files).

NASA Scientific and Technical Publications: A Catalog of Special Publications, Reference Publications, Conference Publications, and Technical Papers 1987-1990

DTIC Science & Technology

1991-02-01

Technical Papers present the results of significant research conducted by NASA scientists and engineers. Presented here are citations for reports from each...CSCL contains photographs of 322 galaxies including the majority of all 03A Shapley-Ames bright galaxies, plus cluster members in the Virgo A...Catalog of Open Clusters and Associated Interstellar Matter Research Council, London, United Kingdom Sponsored by NASA, summarizes observations of 128 open

Testing cold dark matter models using Hubble flow variations

NASA Astrophysics Data System (ADS)

Shi, Xiangdong

1999-05-01

COBE-normalized flat (matter plus cosmological constant) and open cold dark matter (CDM) models are tested by comparing their expected Hubble flow variations and the observed variations in a Type Ia supernova sample and a Tully-Fisher cluster sample. The test provides a probe of the CDM power spectrum on scales of 0.02h Mpc^-1<~ k<~ 0.2h Mpc^-1, free of the bias factor b. The results favour a low matter content universe, or a flat matter-dominated universe with a very low Hubble constant and/or a very small spectral index n^ps, with the best fits having Ο_0~ 0.3 to 0.4. The test is found to be more discriminative to the open CDM models than to the flat CDM models. For example, the test results are found to be compatible with those from the X-ray cluster abundance measurements at smaller length-scales, and consistent with the galaxy and cluster correlation analysis of Peacock & Dodds at similar length-scales, if our universe is flat; but the results are marginally incompatible with the X-ray cluster abundance measurements if our universe is open. The open CDM results are consistent with that of Peacock & Dodds only if the matter density of the universe is less than about 60 per cent of the critical density. The shortcoming of the test is discussed, so are ways to minimize it.

A populous intermediate-age open cluster and evidence of an embedded cluster among the FSR globular cluster candidates

NASA Astrophysics Data System (ADS)

Bica, E.; Bonatto, C.

2008-03-01

We study the nature of the globular cluster (GC) candidates FSR 1603 and FSR1755 selected from the catalogue of Froebrich, Scholz & Raftery. Their properties are investigated with Two-Micron All-Sky Survey field-star decontaminated photometry, which is used to build colour-magnitude diagrams (CMDs) and stellar radial density profiles. FSR1603 has the open cluster Ruprecht 101 as optical counterpart, and we show it to be a massive intermediate-age cluster. Relevant parameters of FSR1603 are the age ~1Gyr, distance from the Sun dsolar ~ 2.7kpc, Galactocentric distance RGC ~ 6.4kpc, core radius RC ~ 1.1pc, mass function slope χ ~ 1.8, observed stellar mass (for stars with mass in the range 1.27 <= m <= 2.03Msolar) Mobs ~ 500Msolar and a total (extrapolated to m = 0.08Msolar) stellar mass Mtot ~ 2300Msolar. FSR1755, on the other hand, is not a populous cluster. It may be a sparse young cluster embedded in the HII region Sh2-3, subject to an absorption AV ~ 4.1, located at dsolar ~ 1.3kpc. Important field-star contamination, spatially variable heavy dust obscuration, even in Ks, and gas emission characterize its field. A nearly vertical, sparse blue stellar sequence shows up in the CMDs.

An overview of the DII-HEP OpenStack based CMS data analysis

NASA Astrophysics Data System (ADS)

Osmani, L.; Tarkoma, S.; Eerola, P.; Komu, M.; Kortelainen, M. J.; Kraemer, O.; Lindén, T.; Toor, S.; White, J.

2015-05-01

An OpenStack based private cloud with the Cluster File System has been built and used with both CMS analysis and Monte Carlo simulation jobs in the Datacenter Indirection Infrastructure for Secure High Energy Physics (DII-HEP) project. On the cloud we run the ARC middleware that allows running CMS applications without changes on the job submission side. Our test results indicate that the adopted approach provides a scalable and resilient solution for managing resources without compromising on performance and high availability. To manage the virtual machines (VM) dynamically in an elastic fasion, we are testing the EMI authorization service (Argus) and the Execution Environment Service (Argus-EES). An OpenStackplugin has been developed for Argus-EES. The Host Identity Protocol (HIP) has been designed for mobile networks and it provides a secure method for IP multihoming. HIP separates the end-point identifier and locator role for IP address which increases the network availability for the applications. Our solution leverages HIP for traffic management. This presentation gives an update on the status of the work and our lessons learned in creating an OpenStackbased cloud for HEP.

Computational methods for evaluation of cell-based data assessment--Bioconductor.

PubMed

Le Meur, Nolwenn

2013-02-01

Recent advances in miniaturization and automation of technologies have enabled cell-based assay high-throughput screening, bringing along new challenges in data analysis. Automation, standardization, reproducibility have become requirements for qualitative research. The Bioconductor community has worked in that direction proposing several R packages to handle high-throughput data including flow cytometry (FCM) experiment. Altogether, these packages cover the main steps of a FCM analysis workflow, that is, data management, quality assessment, normalization, outlier detection, automated gating, cluster labeling, and feature extraction. Additionally, the open-source philosophy of R and Bioconductor, which offers room for new development, continuously drives research and improvement of theses analysis methods, especially in the field of clustering and data mining. This review presents the principal FCM packages currently available in R and Bioconductor, their advantages and their limits. Copyright © 2012 Elsevier Ltd. All rights reserved.

Towards the use of similarity distances to music genre classification: A comparative study.

PubMed

Goienetxea, Izaro; Martínez-Otzeta, José María; Sierra, Basilio; Mendialdua, Iñigo

2018-01-01

Music genre classification is a challenging research concept, for which open questions remain regarding classification approach, music piece representation, distances between/within genres, and so on. In this paper an investigation on the classification of generated music pieces is performed, based on the idea that grouping close related known pieces in different sets -or clusters- and then generating in an automatic way a new song which is somehow "inspired" in each set, the new song would be more likely to be classified as belonging to the set which inspired it, based on the same distance used to separate the clusters. Different music pieces representations and distances among pieces are used; obtained results are promising, and indicate the appropriateness of the used approach even in a such a subjective area as music genre classification is.

Distribution and Genetic Diversity of Bacteriocin Gene Clusters in Rumen Microbial Genomes.

PubMed

Azevedo, Analice C; Bento, Cláudia B P; Ruiz, Jeronimo C; Queiroz, Marisa V; Mantovani, Hilário C

2015-10-01

Some species of ruminal bacteria are known to produce antimicrobial peptides, but the screening procedures have mostly been based on in vitro assays using standardized methods. Recent sequencing efforts have made available the genome sequences of hundreds of ruminal microorganisms. In this work, we performed genome mining of the complete and partial genome sequences of 224 ruminal bacteria and 5 ruminal archaea to determine the distribution and diversity of bacteriocin gene clusters. A total of 46 bacteriocin gene clusters were identified in 33 strains of ruminal bacteria. Twenty gene clusters were related to lanthipeptide biosynthesis, while 11 gene clusters were associated with sactipeptide production, 7 gene clusters were associated with class II bacteriocin production, and 8 gene clusters were associated with class III bacteriocin production. The frequency of strains whose genomes encode putative antimicrobial peptide precursors was 14.4%. Clusters related to the production of sactipeptides were identified for the first time among ruminal bacteria. BLAST analysis indicated that the majority of the gene clusters (88%) encoding putative lanthipeptides contained all the essential genes required for lanthipeptide biosynthesis. Most strains of Streptococcus (66.6%) harbored complete lanthipeptide gene clusters, in addition to an open reading frame encoding a putative class II bacteriocin. Albusin B-like proteins were found in 100% of the Ruminococcus albus strains screened in this study. The in silico analysis provided evidence of novel biosynthetic gene clusters in bacterial species not previously related to bacteriocin production, suggesting that the rumen microbiota represents an underexplored source of antimicrobial peptides. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Rotation Periods of Open Cluster Stars. IV.

NASA Astrophysics Data System (ADS)

Prosser, Charles F.; Grankin, Konstantin N.

We present the results from a photometric monitoring program of primarily solar-type open cluster stars obtained during 1994 and 1995. Several members of the α Persei cluster have been monitored and the corresponding relation between coronal x-ray activity and rotation period derived. The relation among mid-G/K type members illustrates both the previously noticed downturn in L_X/L_bol at high rotation rates and the sharp decrease in coronal activity at long rotation periods as seen among Pleiades stars. Intensive observation of one slowly rotating G-type member of IC 4665 has enabled a period determination of 8-10 days to be made and illustrates the need for (and limitations of) high quality observations.

Nucleotide sequence of a cluster of early and late genes in a conserved segment of the vaccinia virus genome.

PubMed Central

Plucienniczak, A; Schroeder, E; Zettlmeissl, G; Streeck, R E

1985-01-01

The nucleotide sequence of a 7.6 kb vaccinia DNA segment from a genomic region conserved among different orthopox virus has been determined. This segment contains a tight cluster of 12 partly overlapping open reading frames most of which can be correlated with previously identified early and late proteins and mRNAs. Regulatory signals used by vaccinia virus have been studied. Presumptive promoter regions are rich in A, T and carry the consensus sequences TATA and AATAA spaced at 20-24 base pairs. Tandem repeats of a CTATTC consensus sequence are proposed to be involved in the termination of early transcription. PMID:2987815

Intelligent screening of electrofusion-polyethylene joints based on a thermal NDT method

NASA Astrophysics Data System (ADS)

Doaei, Marjan; Tavallali, M. Sadegh

2018-05-01

The combinations of infrared thermal images and artificial intelligence methods have opened new avenues for pushing the boundaries of available testing methods. Hence, in the current study, a novel thermal non-destructive testing method for polyethylene electrofusion joints was combined with k-means clustering algorithms as an intelligent screening tool. The experiments focused on ovality of pipes in the coupler, as well as misalignment of pipes-couplers in 25 mm diameter joints. The temperature responses of each joint to an internal heat pulse were recorded by an IR thermal camera, and further processed to identify the faulty joints. The results represented clustering accuracy of 92%, as well as more than 90% abnormality detection capabilities.

Transmission Loss Calculation using A and B Loss Coefficients in Dynamic Economic Dispatch Problem

NASA Astrophysics Data System (ADS)

Jethmalani, C. H. Ram; Dumpa, Poornima; Simon, Sishaj P.; Sundareswaran, K.

2016-04-01

This paper analyzes the performance of A-loss coefficients while evaluating transmission losses in a Dynamic Economic Dispatch (DED) Problem. The performance analysis is carried out by comparing the losses computed using nominal A loss coefficients and nominal B loss coefficients in reference with load flow solution obtained by standard Newton-Raphson (NR) method. Density based clustering method based on connected regions with sufficiently high density (DBSCAN) is employed in identifying the best regions of A and B loss coefficients. Based on the results obtained through cluster analysis, a novel approach in improving the accuracy of network loss calculation is proposed. Here, based on the change in per unit load values between the load intervals, loss coefficients are updated for calculating the transmission losses. The proposed algorithm is tested and validated on IEEE 6 bus system, IEEE 14 bus, system IEEE 30 bus system and IEEE 118 bus system. All simulations are carried out using SCILAB 5.4 (www.scilab.org) which is an open source software.

Magnetism and exchange interaction of small rare-earth clusters; Tb as a representative

PubMed Central

Peters, Lars; Ghosh, Saurabh; Sanyal, Biplab; van Dijk, Chris; Bowlan, John; de Heer, Walt; Delin, Anna; Di Marco, Igor; Eriksson, Olle; Katsnelson, Mikhail I.; Johansson, Börje; Kirilyuk, Andrei

2016-01-01

Here we follow, both experimentally and theoretically, the development of magnetism in Tb clusters from the atomic limit, adding one atom at a time. The exchange interaction is, surprisingly, observed to drastically increase compared to that of bulk, and to exhibit irregular oscillations as a function of the interatomic distance. From electronic structure theory we find that the theoretical magnetic moments oscillate with cluster size in exact agreement with experimental data. Unlike the bulk, the oscillation is not caused by the RKKY mechanism. Instead, the inter-atomic exchange is shown to be driven by a competition between wave-function overlap of the 5d shell and the on-site exchange interaction, which leads to a competition between ferromagnetic double-exchange and antiferromagnetic super-exchange. This understanding opens up new ways to tune the magnetic properties of rare-earth based magnets with nano-sized building blocks. PMID:26795239

Silver-induced reconstruction of an adeninate-based metal-organic framework for encapsulation of luminescent adenine-stabilized silver clusters.

PubMed

Jonckheere, Dries; Coutino-Gonzalez, Eduardo; Baekelant, Wouter; Bueken, Bart; Reinsch, Helge; Stassen, Ivo; Fenwick, Oliver; Richard, Fanny; Samorì, Paolo; Ameloot, Rob; Hofkens, Johan; Roeffaers, Maarten B J; De Vos, Dirk E

2016-05-21

Bright luminescent silver-adenine species were successfully stabilized in the pores of the MOF-69A (zinc biphenyldicarboxylate) metal-organic framework, starting from the intrinsically blue luminescent bio-MOF-1 (zinc adeninate 4,4'-biphenyldicarboxylate). Bio-MOF-1 is transformed to the MOF-69A framework by selectively leaching structural adenine linkers from the original framework using silver nitrate solutions in aqueous ethanol. Simultaneously, bright blue-green luminescent silver-adenine clusters are formed inside the pores of the recrystallized MOF-69A matrix in high local concentrations. The structural transition and concurrent changes in optical properties were characterized using a range of structural, physicochemical and spectroscopic techniques (steady-state and time-resolved luminescence, quantum yield determination, fluorescence microscopy). The presented results open new avenues for exploring the use of MOFs containing luminescent silver clusters for solid-state lighting and sensor applications.

Effects of selective attention on continuous opinions and discrete decisions

NASA Astrophysics Data System (ADS)

Si, Xia-Meng; Liu, Yun; Xiong, Fei; Zhang, Yan-Chao; Ding, Fei; Cheng, Hui

2010-09-01

Selective attention describes that individuals have a preference on information according to their involving motivation. Based on achievements of social psychology, we propose an opinion interacting model to improve the modeling of individuals’ interacting behaviors. There are two parameters governing the probability of agents interacting with opponents, i.e. individual relevance and time-openness. It is found that, large individual relevance and large time-openness advance the appearance of large clusters, but large individual relevance and small time-openness favor the lessening of extremism. We also put this new model into application to work out some factor leading to a successful product. Numerical simulations show that selective attention, especially individual relevance, cannot be ignored by launcher firms and information spreaders so as to attain the most successful promotion.

New variable stars discovered in the fields of three Galactic open clusters using the VVV survey

NASA Astrophysics Data System (ADS)

Palma, T.; Minniti, D.; Dékány, I.; Clariá, J. J.; Alonso-García, J.; Gramajo, L. V.; Ramírez Alegría, S.; Bonatto, C.

2016-11-01

This project is a massive near-infrared (NIR) search for variable stars in highly reddened and obscured open cluster (OC) fields projected on regions of the Galactic bulge and disk. The search is performed using photometric NIR data in the J-, H- and Ks- bands obtained from the Vista Variables in the Vía Láctea (VVV) Survey. We performed in each cluster field a variability search using Stetson's variability statistics to select the variable candidates. Later, those candidates were subjected to a frequency analysis using the Generalized Lomb-Scargle and the Phase Dispersion Minimization algorithms. The number of independent observations range between 63 and 73. The newly discovered variables in this study, 157 in total in three different known OCs, are classified based on their light curve shapes, periods, amplitudes and their location in the corresponding color-magnitude (J -Ks ,Ks) and color-color (H -Ks , J - H) diagrams. We found 5 possible Cepheid stars which, based on the period-luminosity relation, are very likely type II Cepheids located behind the bulge. Among the newly discovered variables, there are eclipsing binaries, δ Scuti, as well as background RR Lyrae stars. Using the new version of the Wilson & Devinney code as well as the "Physics Of Eclipsing Binaries" (PHOEBE) code, we analyzed some of the best eclipsing binaries we discovered. Our results show that these studied systems turn out to be ranging from detached to double-contact binaries, with low eccentricities and high inclinations of approximately 80°. Their surface temperatures range between 3500 K and 8000 K.

T-RMSD: a web server for automated fine-grained protein structural classification.

PubMed

Magis, Cedrik; Di Tommaso, Paolo; Notredame, Cedric

2013-07-01

This article introduces the T-RMSD web server (tree-based on root-mean-square deviation), a service allowing the online computation of structure-based protein classification. It has been developed to address the relation between structural and functional similarity in proteins, and it allows a fine-grained structural clustering of a given protein family or group of structurally related proteins using distance RMSD (dRMSD) variations. These distances are computed between all pairs of equivalent residues, as defined by the ungapped columns within a given multiple sequence alignment. Using these generated distance matrices (one per equivalent position), T-RMSD produces a structural tree with support values for each cluster node, reminiscent of bootstrap values. These values, associated with the tree topology, allow a quantitative estimate of structural distances between proteins or group of proteins defined by the tree topology. The clusters thus defined have been shown to be structurally and functionally informative. The T-RMSD web server is a free website open to all users and available at http://tcoffee.crg.cat/apps/tcoffee/do:trmsd.

T-RMSD: a web server for automated fine-grained protein structural classification

PubMed Central

Magis, Cedrik; Di Tommaso, Paolo; Notredame, Cedric

2013-01-01

This article introduces the T-RMSD web server (tree-based on root-mean-square deviation), a service allowing the online computation of structure-based protein classification. It has been developed to address the relation between structural and functional similarity in proteins, and it allows a fine-grained structural clustering of a given protein family or group of structurally related proteins using distance RMSD (dRMSD) variations. These distances are computed between all pairs of equivalent residues, as defined by the ungapped columns within a given multiple sequence alignment. Using these generated distance matrices (one per equivalent position), T-RMSD produces a structural tree with support values for each cluster node, reminiscent of bootstrap values. These values, associated with the tree topology, allow a quantitative estimate of structural distances between proteins or group of proteins defined by the tree topology. The clusters thus defined have been shown to be structurally and functionally informative. The T-RMSD web server is a free website open to all users and available at http://tcoffee.crg.cat/apps/tcoffee/do:trmsd. PMID:23716642

Analytic first derivatives for a spin-adapted open-shell coupled cluster theory: Evaluation of first-order electrical properties

DOE Office of Scientific and Technical Information (OSTI.GOV)

Datta, Dipayan, E-mail: datta@uni-mainz.de; Gauss, Jürgen, E-mail: gauss@uni-mainz.de

2014-09-14

An analytic scheme is presented for the evaluation of first derivatives of the energy for a unitary group based spin-adapted coupled cluster (CC) theory, namely, the combinatoric open-shell CC (COSCC) approach within the singles and doubles approximation. The widely used Lagrange multiplier approach is employed for the derivation of an analytical expression for the first derivative of the energy, which in combination with the well-established density-matrix formulation, is used for the computation of first-order electrical properties. Derivations of the spin-adapted lambda equations for determining the Lagrange multipliers and the expressions for the spin-free effective density matrices for the COSCC approachmore » are presented. Orbital-relaxation effects due to the electric-field perturbation are treated via the Z-vector technique. We present calculations of the dipole moments for a number of doublet radicals in their ground states using restricted open-shell Hartree-Fock (ROHF) and quasi-restricted HF (QRHF) orbitals in order to demonstrate the applicability of our analytic scheme for computing energy derivatives. We also report calculations of the chlorine electric-field gradients and nuclear quadrupole-coupling constants for the CCl, CH{sub 2}Cl, ClO{sub 2}, and SiCl radicals.« less

Are the gyro-ages of field stars underestimated?

NASA Astrophysics Data System (ADS)

Kovács, Géza

2015-09-01

By using the current photometric rotational data on eight galactic open clusters, we show that the evolutionary stellar model (isochrone) ages of these clusters are tightly correlated with the period shifts applied to the (B - V)0-Prot ridges that optimally align these ridges to the one defined by Praesepe and the Hyades. On the other hand, when the traditional Skumanich-type multiplicative transformation is used, the ridges become far less aligned due to the age-dependent slope change introduced by the period multiplication. Therefore, we employ our simple additive gyro-age calibration on various datasets of Galactic field stars to test its applicability. We show that, in the overall sense, the gyro-ages are systematically greater than the isochrone ages. The difference could exceed several giga years, depending on the stellar parameters. Although the age overlap between the open clusters used in the calibration and the field star samples is only partial, the systematic difference indicates the limitation of the currently available gyro-age methods and suggests that the rotation of field stars slows down with a considerably lower speed than we would expect from the simple extrapolation of the stellar rotation rates in open clusters.

Effects of midstory reduction and thinning in red-cockaded woodpecker cavity tree clusters

Treesearch

Richard N. Conner; D. Craig Rudolph

1991-01-01

The red-cockaded woodpecker's (Picoides borealis) preference for open pine forest is well known (U.S. Fish and Wildl. Serv. 1985). Encroachment of hardwood midstory within redcockaded woodpecker clusters (colonies, aggregations of cavity trees used by groups of woodpeckers, see Walters et al. 1988) is believed to cause cluster abandonment (Hopkins and Lynn 1971,...

Cluster fescue (Festuca paradoxa Desv.): A multipurpose native cool-season grass

Treesearch

Nadia E. Navarrete-Tindall; J.W. Van Sambeek; R.A. Pierce

2005-01-01

Native cool-season grasses (NCSG) are adapted to a wide range of habitats and environmental conditions, and cluster fescue (Festuca paradoxa Desv.) is no exception. Cluster fescue can be found in unplowed upland prairies, prairie draws, savannas, forest openings, and glades (Aiken et al. 1996). Although its range includes 23 states in the continental...

The mass-ratio and eccentricity distributions of barium and S stars, and red giants in open clusters

NASA Astrophysics Data System (ADS)

Van der Swaelmen, M.; Boffin, H. M. J.; Jorissen, A.; Van Eck, S.

2017-01-01

Context. A complete set of orbital parameters for barium stars, including the longest orbits, has recently been obtained thanks to a radial-velocity monitoring with the HERMES spectrograph installed on the Flemish Mercator telescope. Barium stars are supposed to belong to post-mass-transfer systems. Aims: In order to identify diagnostics distinguishing between pre- and post-mass-transfer systems, the properties of barium stars (more precisely their mass-function distribution and their period-eccentricity (P-e) diagram) are compared to those of binary red giants in open clusters. As a side product, we aim to identify possible post-mass-transfer systems among the cluster giants from the presence of s-process overabundances. We investigate the relation between the s-process enrichment, the location in the (P-e) diagram, and the cluster metallicity and turn-off mass. Methods: To invert the mass-function distribution and derive the mass-ratio distribution, we used the method pioneered by Boffin et al. (1992) that relies on a Richardson-Lucy deconvolution algorithm. The derivation of s-process abundances in the open-cluster giants was performed through spectral synthesis with MARCS model atmospheres. Results: A fraction of 22% of post-mass-transfer systems is found among the cluster binary giants (with companion masses between 0.58 and 0.87 M⊙, typical for white dwarfs), and these systems occupy a wider area than barium stars in the (P-e) diagram. Barium stars have on average lower eccentricities at a given orbital period. When the sample of binary giant stars in clusters is restricted to the subsample of systems occupying the same locus as the barium stars in the (P-e) diagram, and with a mass function compatible with a WD companion, 33% (=4/12) show a chemical signature of mass transfer in the form of s-process overabundances (from rather moderate - about 0.3 dex - to more extreme - about 1 dex). The only strong barium star in our sample is found in the cluster with the lowest metallicity in the sample (I.e. star 173 in NGC 2420, with [Fe/H] = -0.26), whereas the barium stars with mild s-process abundance anomalies (from 0.25 to 0.6 dex) are found in the clusters with slightly subsolar metallicities. Our finding confirms the classical prediction that the s-process nucleosynthesis is more efficient at low metallicities, since the s-process overabundance is not clearly correlated with the cluster turn-off (TO) mass; such a correlation would instead hint at the importance of the dilution factor. We also find a mild barium star in NGC 2335, a cluster with a large TO mass of 4.3 M⊙, which implies that asymptotic giant branch stars that massive still operate the s-process and the third dredge-up. Based on observations made with the Mercator Telescope, operated on the island of La Palma by the Flemish Community, at the Spanish Observatorio del Roque de los Muchachos of the Instituto de Astrofisica de Canarias, and on observations made with the HARPS spectrograph installed on the 3.6 m telescope at the European Southern Observatory.

On the Origin of Sub-subgiant Stars. II. Binary Mass Transfer, Envelope Stripping, and Magnetic Activity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Leiner, Emily; Mathieu, Robert D.; Geller, Aaron M., E-mail: leiner@astro.wisc.edu

Sub-subgiant stars (SSGs) lie to the red of the main sequence and fainter than the red giant branch in cluster color–magnitude diagrams (CMDs), a region not easily populated by standard stellar evolution pathways. While there has been speculation on what mechanisms may create these unusual stars, no well-developed theory exists to explain their origins. Here we discuss three hypotheses of SSG formation: (1) mass transfer in a binary system, (2) stripping of a subgiant’s envelope, perhaps during a dynamical encounter, and (3) reduced luminosity due to magnetic fields that lower convective efficiency and produce large starspots. Using the stellar evolutionmore » code MESA, we develop evolutionary tracks for each of these hypotheses, and compare the expected stellar and orbital properties of these models with six known SSGs in the two open clusters M67 and NGC 6791. All three of these mechanisms can create stars or binary systems in the SSG CMD domain. We also calculate the frequency with which each of these mechanisms may create SSG systems, and find that the magnetic field hypothesis is expected to create SSGs with the highest frequency in open clusters. Mass transfer and envelope stripping have lower expected formation frequencies, but may nevertheless create occasional SSGs in open clusters. They may also be important mechanisms to create SSGs in higher mass globular clusters.« less

Correction to: Fe-S cluster assembly in the supergroup Excavata.

PubMed

Peña-Diaz, Priscila; Lukeš, Julius

2018-05-29

The article "Fe-S cluster assembly in the supergroup Excavata", written by Priscila Peña‑Diaz, Julius Lukeš was originally published electronically on the publisher's internet portal (currently SpringerLink) without open access.

A radial velocity survey of the open cluster IC 4665

NASA Technical Reports Server (NTRS)

Prosser, Charles F.; Giampapa, Mark S.

1994-01-01

A radial velocity survey of the open cluster IC 4665 is reported for a group of candidate members previously identified on the basis of proper motion and photometry. Of those candidates observed, 20 out of 42 have radial velocities consistent with membership; these cluster members populate the F5-K0 dwarf region and represent the first relatively conclusive membership determinations for such solar-type stars in IC 4665. Three new spectroscopic binary members of the cluster have been identified. Rotational velocities have also been derived; the v sin i distribution among IC 4665 members reveals that most apparent G dwarf members of IC 4665 are seen to exhibit substantial rotation (v sin i greater than 10 km/s). When compared to evolutionary isochrones, the current list of intermediate-mass members appears to support earlier suggestions that IC 4665 has an age comparable to the Pleiades.

The CNO Bi-cycle in the Open Cluster NGC 752

NASA Astrophysics Data System (ADS)

Hawkins, Keith; Schuler, S.; King, J.; The, L.

2011-01-01

The CNO bi-cycle is the primary energy source for main sequence stars more massive than the sun. To test our understanding of stellar evolution models using the CNO bi-cycle, we have undertaken light-element (CNO) abundance analysis of three main sequence dwarf stars and three red giant stars in the open cluster NGC 752 utilizing high resolution (R 50,000) spectroscopy from the Keck Observatory. Preliminary results indicate, as expected, there is a depletion of carbon in the giants relative to the dwarfs. Additional analysis is needed to determine if the amount of depletion is in line with model predictions, as seen in the Hyades open cluster. Oxygen abundances are derived from the high-excitation O I triplet, and there is a 0.19 dex offset in the [O/H] abundances between the giants and dwarfs which may be explained by non-local thermodynamic equilibrium (NLTE), although further analysis is needed to verify this. The standard procedure for spectroscopically determining stellar parameters used here allows for a measurement of the cluster metallicity, [Fe/H] = 0.04 ± 0.02. In addition to the Fe abundances we have determined Na, Mg, and Al abundances to determine the status of other nucleosynthesis processes. The Na, Mg and Al abundances of the giants are enhanced relative to the dwarfs, which is consistent with similar findings in giants of other open clusters. Support for K. Hawkins was provided by the NOAO/KPNO Research Experiences for Undergraduates (REU) Program which is funded by the National Science Foundation Research Experiences for Undergraduates Program and the Department of Defense ASSURE program through Scientific Program Order No. 13 (AST-0754223) of the Cooperative Agreement No. AST-0132798 between the Association of Universities for Research in Astronomy (AURA) and the NSF.

Analysis of Tropical Cyclone Tracks in the North Indian Ocean

NASA Astrophysics Data System (ADS)

Patwardhan, A.; Paliwal, M.; Mohapatra, M.

2011-12-01

Cyclones are regarded as one of the most dangerous meteorological phenomena of the tropical region. The probability of landfall of a tropical cyclone depends on its movement (trajectory). Analysis of trajectories of tropical cyclones could be useful for identifying potentially predictable characteristics. There is long history of analysis of tropical cyclones tracks. A common approach is using different clustering techniques to group the cyclone tracks on the basis of certain characteristics. Various clustering method have been used to study the tropical cyclones in different ocean basins like western North Pacific ocean (Elsner and Liu, 2003; Camargo et al., 2007), North Atlantic Ocean (Elsner, 2003; Gaffney et al. 2007; Nakamura et al., 2009). In this study, tropical cyclone tracks in the North Indian Ocean basin, for the period 1961-2010 have been analyzed and grouped into clusters based on their spatial characteristics. A tropical cyclone trajectory is approximated as an open curve and described by its first two moments. The resulting clusters have different centroid locations and also differently shaped variance ellipses. These track characteristics are then used in the standard clustering algorithms which allow the whole track shape, length, and location to be incorporated into the clustering methodology. The resulting clusters have different genesis locations and trajectory shapes. We have also examined characteristics such as life span, maximum sustained wind speed, landfall, seasonality, many of which are significantly different across the identified clusters. The clustering approach groups cyclones with higher maximum wind speed and longest life span in to one cluster. Another cluster includes short duration cyclonic events that are mostly deep depressions and significant for rainfall over Eastern and Central India. The clustering approach is likely to prove useful for analysis of events of significance with regard to impacts.

Symptoms and Symptom Clusters Identified by Adolescents and Young Adults With Cancer Using a Symptom Heuristics App.

PubMed

Ameringer, Suzanne; Erickson, Jeanne M; Macpherson, Catherine Fiona; Stegenga, Kristin; Linder, Lauri A

2015-12-01

Adolescents and young adults (AYAs) with cancer experience multiple distressing symptoms during treatment. Because the typical approach to symptom assessment does not easily reflect the symptom experience of individuals, alternative approaches to enhancing communication between the patient and provider are needed. We developed an iPad-based application that uses a heuristic approach to explore AYAs' cancer symptom experiences. In this mixed-methods descriptive study, 72 AYAs (13-29 years old) with cancer receiving myelosuppressive chemotherapy used the Computerized Symptom Capture Tool (C-SCAT) to create images of the symptoms and symptom clusters they experienced from a list of 30 symptoms. They answered open-ended questions within the C-SCAT about the causes of their symptoms and symptom clusters. The images generated through the C-SCAT and accompanying free-text data were analyzed using descriptive, content, and visual analyses. Most participants (n = 70) reported multiple symptoms (M = 8.14). The most frequently reported symptoms were nausea (65.3%), feeling drowsy (55.6%), lack of appetite (55.6%), and lack of energy (55.6%). Forty-six grouped their symptoms into one or more clusters. The most common symptom cluster was nausea/eating problems/appetite problems. Nausea was most frequently named as the priority symptom in a cluster and as a cause of other symptoms. Although common threads were present in the symptoms experienced by AYAs, the graphic images revealed unique perspectives and a range of complexity of symptom relationships, clusters, and causes. Results highlight the need for a tailored approach to symptom management based on how the AYA with cancer perceives his or her symptom experience. © 2015 Wiley Periodicals, Inc.

The absoluteness of semantic processing: lessons from the analysis of temporal clusters in phonemic verbal fluency.

PubMed

Vonberg, Isabelle; Ehlen, Felicitas; Fromm, Ortwin; Klostermann, Fabian

2014-01-01

For word production, we may consciously pursue semantic or phonological search strategies, but it is uncertain whether we can retrieve the different aspects of lexical information independently from each other. We therefore studied the spread of semantic information into words produced under exclusively phonemic task demands. 42 subjects participated in a letter verbal fluency task, demanding the production of as many s-words as possible in two minutes. Based on curve fittings for the time courses of word production, output spurts (temporal clusters) considered to reflect rapid lexical retrieval based on automatic activation spread, were identified. Semantic and phonemic word relatedness within versus between these clusters was assessed by respective scores (0 meaning no relation, 4 maximum relation). Subjects produced 27.5 (±9.4) words belonging to 6.7 (±2.4) clusters. Both phonemically and semantically words were more related within clusters than between clusters (phon: 0.33±0.22 vs. 0.19±0.17, p<.01; sem: 0.65±0.29 vs. 0.37±0.29, p<.01). Whereas the extent of phonemic relatedness correlated with high task performance, the contrary was the case for the extent of semantic relatedness. The results indicate that semantic information spread occurs, even if the consciously pursued word search strategy is purely phonological. This, together with the negative correlation between semantic relatedness and verbal output suits the idea of a semantic default mode of lexical search, acting against rapid task performance in the given scenario of phonemic verbal fluency. The simultaneity of enhanced semantic and phonemic word relatedness within the same temporal cluster boundaries suggests an interaction between content and sound-related information whenever a new semantic field has been opened.

Initial conditions of formation of starburst clusters: constraints from stellar dynamics

NASA Astrophysics Data System (ADS)

Banerjee, Sambaran

2017-03-01

How starburst clusters form out of molecular clouds is still an open question. In this article, I highlight some of the key constraints in this regard, that one can get from the dynamical evolutionary properties of dense stellar systems. I particularly focus on secular expansion of massive star clusters and hierarchical merging of sub-clusters, and discuss their implications vis-á-vis the observed properties of young massive clusters. The analysis suggests that residual gas expulsion is necessary for shaping these clusters as we see them today, irrespective of their monolithic or hierarchical mode of formation.

DEBRIS DISKS OF MEMBERS OF THE BLANCO 1 OPEN CLUSTER

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stauffer, John R.; Noriega-Crespo, Alberto; Rebull, Luisa M.

2010-08-20

We have used the Spitzer Space Telescope to obtain Multiband Imaging Photometer for Spitzer (MIPS) 24 {mu}m photometry for 37 members of the {approx}100 Myr old open cluster Blanco 1. For the brightest 25 of these stars (where we have 3{sigma} uncertainties less than 15%), we find significant mid-IR excesses for eight stars, corresponding to a debris disk detection frequency of about 32%. The stars with excesses include two A stars, four F dwarfs, and two G dwarfs. The most significant linkage between 24 {mu}m excess and any other stellar property for our Blanco 1 sample of stars is withmore » binarity. Blanco 1 members that are photometric binaries show few or no detected 24 {mu}m excesses whereas a quarter of the apparently single Blanco 1 members do have excesses. We have examined the MIPS data for two other clusters of similar age to Blanco 1-NGC 2547 and the Pleiades. The AFGK photometric binary star members of both of these clusters also show a much lower frequency of 24 {mu}m excesses compared to stars that lie near the single-star main sequence. We provide a new determination of the relation between the V - K {sub s} color and K {sub s} - [24] color for main sequence photospheres based on Hyades members observed with MIPS. As a result of our analysis of the Hyades data, we identify three low mass Hyades members as candidates for having debris disks near the MIPS detection limit.« less

Cluster stability in the analysis of mass cytometry data.

PubMed

Melchiotti, Rossella; Gracio, Filipe; Kordasti, Shahram; Todd, Alan K; de Rinaldis, Emanuele

2017-01-01

Manual gating has been traditionally applied to cytometry data sets to identify cells based on protein expression. The advent of mass cytometry allows for a higher number of proteins to be simultaneously measured on cells, therefore providing a means to define cell clusters in a high dimensional expression space. This enhancement, whilst opening unprecedented opportunities for single cell-level analyses, makes the incremental replacement of manual gating with automated clustering a compelling need. To this aim many methods have been implemented and their successful applications demonstrated in different settings. However, the reproducibility of automatically generated clusters is proving challenging and an analytical framework to distinguish spurious clusters from more stable entities, and presumably more biologically relevant ones, is still missing. One way to estimate cell clusters' stability is the evaluation of their consistent re-occurrence within- and between-algorithms, a metric that is commonly used to evaluate results from gene expression. Herein we report the usage and importance of cluster stability evaluations, when applied to results generated from three popular clustering algorithms - SPADE, FLOCK and PhenoGraph - run on four different data sets. These algorithms were shown to generate clusters with various degrees of statistical stability, many of them being unstable. By comparing the results of automated clustering with manually gated populations, we illustrate how information on cluster stability can assist towards a more rigorous and informed interpretation of clustering results. We also explore the relationships between statistical stability and other properties such as clusters' compactness and isolation, demonstrating that whilst cluster stability is linked to other properties it cannot be reliably predicted by any of them. Our study proposes the introduction of cluster stability as a necessary checkpoint for cluster interpretation and contributes to the construction of a more systematic and standardized analytical framework for the assessment of cytometry clustering results. © 2016 International Society for Advancement of Cytometry. © 2016 International Society for Advancement of Cytometry.

The GALAH survey: chemical tagging of star clusters and new members in the Pleiades

NASA Astrophysics Data System (ADS)

Kos, Janez; Bland-Hawthorn, Joss; Freeman, Ken; Buder, Sven; Traven, Gregor; De Silva, Gayandhi M.; Sharma, Sanjib; Asplund, Martin; Duong, Ly; Lin, Jane; Lind, Karin; Martell, Sarah; Simpson, Jeffrey D.; Stello, Dennis; Zucker, Daniel B.; Zwitter, Tomaž; Anguiano, Borja; Da Costa, Gary; D'Orazi, Valentina; Horner, Jonathan; Kafle, Prajwal R.; Lewis, Geraint; Munari, Ulisse; Nataf, David M.; Ness, Melissa; Reid, Warren; Schlesinger, Katie; Ting, Yuan-Sen; Wyse, Rosemary

2018-02-01

The technique of chemical tagging uses the elemental abundances of stellar atmospheres to 'reconstruct' chemically homogeneous star clusters that have long since dispersed. The GALAH spectroscopic survey - which aims to observe one million stars using the Anglo-Australian Telescope - allows us to measure up to 30 elements or dimensions in the stellar chemical abundance space, many of which are not independent. How to find clustering reliably in a noisy high-dimensional space is a difficult problem that remains largely unsolved. Here, we explore t-distributed stochastic neighbour embedding (t-SNE) - which identifies an optimal mapping of a high-dimensional space into fewer dimensions - whilst conserving the original clustering information. Typically, the projection is made to a 2D space to aid recognition of clusters by eye. We show that this method is a reliable tool for chemical tagging because it can: (i) resolve clustering in chemical space alone, (ii) recover known open and globular clusters with high efficiency and low contamination, and (iii) relate field stars to known clusters. t-SNE also provides a useful visualization of a high-dimensional space. We demonstrate the method on a data set of 13 abundances measured in the spectra of 187 000 stars by the GALAH survey. We recover seven of the nine observed clusters (six globular and three open clusters) in chemical space with minimal contamination from field stars and low numbers of outliers. With chemical tagging, we also identify two Pleiades supercluster members (which we confirm kinematically), one as far as 6° - one tidal radius away from the cluster centre.

Improving 3d Spatial Queries Search: Newfangled Technique of Space Filling Curves in 3d City Modeling

NASA Astrophysics Data System (ADS)

Uznir, U.; Anton, F.; Suhaibah, A.; Rahman, A. A.; Mioc, D.

2013-09-01

The advantages of three dimensional (3D) city models can be seen in various applications including photogrammetry, urban and regional planning, computer games, etc.. They expand the visualization and analysis capabilities of Geographic Information Systems on cities, and they can be developed using web standards. However, these 3D city models consume much more storage compared to two dimensional (2D) spatial data. They involve extra geometrical and topological information together with semantic data. Without a proper spatial data clustering method and its corresponding spatial data access method, retrieving portions of and especially searching these 3D city models, will not be done optimally. Even though current developments are based on an open data model allotted by the Open Geospatial Consortium (OGC) called CityGML, its XML-based structure makes it challenging to cluster the 3D urban objects. In this research, we propose an opponent data constellation technique of space-filling curves (3D Hilbert curves) for 3D city model data representation. Unlike previous methods, that try to project 3D or n-dimensional data down to 2D or 3D using Principal Component Analysis (PCA) or Hilbert mappings, in this research, we extend the Hilbert space-filling curve to one higher dimension for 3D city model data implementations. The query performance was tested using a CityGML dataset of 1,000 building blocks and the results are presented in this paper. The advantages of implementing space-filling curves in 3D city modeling will improve data retrieval time by means of optimized 3D adjacency, nearest neighbor information and 3D indexing. The Hilbert mapping, which maps a subinterval of the [0, 1] interval to the corresponding portion of the d-dimensional Hilbert's curve, preserves the Lebesgue measure and is Lipschitz continuous. Depending on the applications, several alternatives are possible in order to cluster spatial data together in the third dimension compared to its clustering in 2D.

Theoretical study of the electronic and optical properties of photochromic dithienylethene derivatives connected to small gold clusters.

PubMed

Perrier, Aurélie; Maurel, François; Aubard, Jean

2007-10-04

In the course of developing electronic devices on a molecular scale, dithienylethenes photochromic molecules constitute promising candidates for optoelectronic applications such as memories and switches. There is thus a great interest to understand and control the switching behavior of photochromic compounds deposited on metallic surfaces or nanoparticles. Within the framework of the density functional theory, we studied the effect of small gold clusters (Au3 and Au9) on the electronic structure and absorption spectrum of a model dithienylethene molecule. The molecular orbital interactions between the photochromic molecule and the gold cluster made it possible to rationalize some experimental findings (Dulic, D.; van der Molen, S. J.; Kudernac, T.; Jonkman, H. T.; de Jong, J. J. D.; Bowden, T. N.; van Esch, J.; Feringa, B. L.; van Wees, B. J. Phys. Rev. Lett. 2003, 91, 207402). For the closed-ring isomer, grafting a photochromic molecule on a small gold cluster does not change the characteristics of the electronic transition involved in the ring-opening reaction. On the opposite, the absorption spectrum of the photochromic open-ring isomer is strongly modified by the inclusion of the metallic cluster. In agreement with experimental results, our study thus showed that the cycloreversion reaction which involves the closed-ring isomer should be still possible, whereas the ring-closure reaction which involves the open-ring isomer should be inhibited. Connecting a dithienylethene molecule to a small gold cluster hence provides a qualitative comprehension of the photochromic activities of dithienylethenes connected to a gold surface.

An X-Ray Survey of the Open Cluster NGC 6475 (M7) with ROSAT

NASA Technical Reports Server (NTRS)

Prosser, Charles F.; Stauffer, John R.; Caillault, J.-P.; Balachandran, Suchitra; Stern, Robert A.; Randich, Sofia

1995-01-01

A ROSAT x-ray survey, with complimentary optical photometry, of the open cluster NGC 6475 has enabled the detection of approx. 50 late-F to K0 and approx. 70 K/M dwarf new candidate members, providing the first reliable detection of low-mass stars in this low. galactic latitude, 220 Myr old cluster. The x-ray observations reported here have a typical limiting sensitivity of L(sub x) approx. equal to 10(exp 29) erg/s. The detection frequency of early type cluster members is consistent with the hypothesis that the x-ray emitting early type stars are binary systems with an unseen, low-mass secondary producing the x rays. The ratio between x-ray and bolometric luminosity among NGC 6475 members saturates at a spectral-type/color which is intermediate between that in much younger and in much older clusters, consistent with rotational spindown of solar-type stars upon their arrival on the ZAMS. The upper envelope of x-ray luminosity as a function of spectral type is comparable to that of the Pleiades, with the observed spread in x-ray luminosity among low-mass members being likely due to the presence of binaries and relatively rapid rotators. However, the list of x-ray selected candidate members is likely biased against low-mass, slowly rotating single stars. While some preliminary spectroscopic information is given in an appendix, further spectroscopic observations of the new candidate members will aid in interpreting the coronal activity among solar-type NGC 6475 members and their relation to similar stars in older and younger open clusters.

New asteroseismic scaling relations based on the Hayashi track relation applied to red giant branch stars in NGC 6791 and NGC 6819

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wu, T.; Li, Y.; Hekker, S., E-mail: wutao@ynao.ac.cn, E-mail: ly@ynao.ac.cn, E-mail: hekker@mps.mpg.de

2014-01-20

Stellar mass M, radius R, and gravity g are important basic parameters in stellar physics. Accurate values for these parameters can be obtained from the gravitational interaction between stars in multiple systems or from asteroseismology. Stars in a cluster are thought to be formed coevally from the same interstellar cloud of gas and dust. The cluster members are therefore expected to have some properties in common. These common properties strengthen our ability to constrain stellar models and asteroseismically derived M, R, and g when tested against an ensemble of cluster stars. Here we derive new scaling relations based on amore » relation for stars on the Hayashi track (√(T{sub eff})∼g{sup p}R{sup q}) to determine the masses and metallicities of red giant branch stars in open clusters NGC 6791 and NGC 6819 from the global oscillation parameters Δν (the large frequency separation) and ν{sub max} (frequency of maximum oscillation power). The Δν and ν{sub max} values are derived from Kepler observations. From the analysis of these new relations we derive: (1) direct observational evidence that the masses of red giant branch stars in a cluster are the same within their uncertainties, (2) new methods to derive M and z of the cluster in a self-consistent way from Δν and ν{sub max}, with lower intrinsic uncertainties, and (3) the mass dependence in the Δν - ν{sub max} relation for red giant branch stars.« less

An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics

PubMed Central

2010-01-01

Background Bioinformatics researchers are now confronted with analysis of ultra large-scale data sets, a problem that will only increase at an alarming rate in coming years. Recent developments in open source software, that is, the Hadoop project and associated software, provide a foundation for scaling to petabyte scale data warehouses on Linux clusters, providing fault-tolerant parallelized analysis on such data using a programming style named MapReduce. Description An overview is given of the current usage within the bioinformatics community of Hadoop, a top-level Apache Software Foundation project, and of associated open source software projects. The concepts behind Hadoop and the associated HBase project are defined, and current bioinformatics software that employ Hadoop is described. The focus is on next-generation sequencing, as the leading application area to date. Conclusions Hadoop and the MapReduce programming paradigm already have a substantial base in the bioinformatics community, especially in the field of next-generation sequencing analysis, and such use is increasing. This is due to the cost-effectiveness of Hadoop-based analysis on commodity Linux clusters, and in the cloud via data upload to cloud vendors who have implemented Hadoop/HBase; and due to the effectiveness and ease-of-use of the MapReduce method in parallelization of many data analysis algorithms. PMID:21210976

An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics.

PubMed

Taylor, Ronald C

2010-12-21

Bioinformatics researchers are now confronted with analysis of ultra large-scale data sets, a problem that will only increase at an alarming rate in coming years. Recent developments in open source software, that is, the Hadoop project and associated software, provide a foundation for scaling to petabyte scale data warehouses on Linux clusters, providing fault-tolerant parallelized analysis on such data using a programming style named MapReduce. An overview is given of the current usage within the bioinformatics community of Hadoop, a top-level Apache Software Foundation project, and of associated open source software projects. The concepts behind Hadoop and the associated HBase project are defined, and current bioinformatics software that employ Hadoop is described. The focus is on next-generation sequencing, as the leading application area to date. Hadoop and the MapReduce programming paradigm already have a substantial base in the bioinformatics community, especially in the field of next-generation sequencing analysis, and such use is increasing. This is due to the cost-effectiveness of Hadoop-based analysis on commodity Linux clusters, and in the cloud via data upload to cloud vendors who have implemented Hadoop/HBase; and due to the effectiveness and ease-of-use of the MapReduce method in parallelization of many data analysis algorithms.

Hot Chips and Hot Interconnects for High End Computing Systems

NASA Technical Reports Server (NTRS)

Saini, Subhash

2005-01-01

I will discuss several processors: 1. The Cray proprietary processor used in the Cray X1; 2. The IBM Power 3 and Power 4 used in an IBM SP 3 and IBM SP 4 systems; 3. The Intel Itanium and Xeon, used in the SGI Altix systems and clusters respectively; 4. IBM System-on-a-Chip used in IBM BlueGene/L; 5. HP Alpha EV68 processor used in DOE ASCI Q cluster; 6. SPARC64 V processor, which is used in the Fujitsu PRIMEPOWER HPC2500; 7. An NEC proprietary processor, which is used in NEC SX-6/7; 8. Power 4+ processor, which is used in Hitachi SR11000; 9. NEC proprietary processor, which is used in Earth Simulator. The IBM POWER5 and Red Storm Computing Systems will also be discussed. The architectures of these processors will first be presented, followed by interconnection networks and a description of high-end computer systems based on these processors and networks. The performance of various hardware/programming model combinations will then be compared, based on latest NAS Parallel Benchmark results (MPI, OpenMP/HPF and hybrid (MPI + OpenMP). The tutorial will conclude with a discussion of general trends in the field of high performance computing, (quantum computing, DNA computing, cellular engineering, and neural networks).

Seven Sisters Get WISE

NASA Image and Video Library

2010-07-16

This image shows the famous Pleiades cluster of stars as seen through the eyes of NASA Wide-field Infrared Survey Explorer; they are what astronomers call an open cluster of stars, loosely bound to each other to eventually go their separate ways.

The 100 brigthest Blue Straggler Stars.

NASA Astrophysics Data System (ADS)

Morales Durán, C.; Llorente de Andrés, F.; Ahumada, J. A.

2015-05-01

Blue straggler stars (BSS) are characterized by their appearance in the CMD of globular and open clusters, in the Main Sequence extension, above the turn-off and blueward of this. In accordance with the Standard Theory of stellar evolution, BSS should be out of the Main Sequence and over the Giant Branch if they really belong to the cluster and are formed at the same time than the rest of cluster stars. There are several theories that try to explain the existence of BSS but at present prevails the idea that they can be the product of mass transfer in binaries (McCrea, 1964), and the luminosity of the receiver star is incremented in such a way that now it is over the Main Sequence turn-off point of its cluster. Also it is believed that they are the result of stellar fussion of two or several stars, specially in dense systems as the globular cluster nucleus. This work is focalised in all the BSS brihgter the V = 10 mag. that we have been able to identify in open clusters. It is a sample unprecedented by its number and as well it is a sample with plentiful observational information, it is why we hope to be able to assure their membership to the parent cluster and obtain reliable information about their possible origin.

Post-genome research on the biosynthesis of ergot alkaloids.

PubMed

Li, Shu-Ming; Unsöld, Inge A

2006-10-01

Genome sequencing provides new opportunities and challenges for identifying genes for the biosynthesis of secondary metabolites. A putative biosynthetic gene cluster of fumigaclavine C, an ergot alkaloid of the clavine type, was identified in the genome sequence of ASPERGILLUS FUMIGATUS by a bioinformatic approach. This cluster spans 22 kb of genomic DNA and comprises at least 11 open reading frames (ORFs). Seven of them are orthologous to genes from the biosynthetic gene cluster of ergot alkaloids in CLAVICEPS PURPUREA. Experimental evidence of the identified cluster was provided by heterologous expression and biochemical characterization of two ORFs, FgaPT1 and FgaPT2, in the cluster of A. FUMIGATUS, which show remarkable similarities to dimethylallyltryptophan synthase from C. PURPUREA and function as prenyltransferases. FgaPT2 converts L-tryptophan to dimethylallyltryptophan and thereby catalyzes the first step of ergot alkaloid biosynthesis, whilst FgaPT1 catalyzes the last step of the fumigaclavine C biosynthesis, i. e., the prenylation of fumigaclavine A at C-2 position of the indole nucleus. In addition to information obtained from the gene cluster of ergot alkaloids from C. PURPUREA, the identification of the biosynthetic gene cluster of fumigaclavine C in A. FUMIGATUS opens an alternative way to study the biosynthesis of ergot alkaloids in fungi.

Image Subtraction Reduction of Open Clusters M35 & NGC 2158 in the K2 Campaign 0 Super Stamps

NASA Astrophysics Data System (ADS)

Soares-Furtado, M.; Hartman, J. D.; Bakos, G. Á.; Huang, C. X.; Penev, K.; Bhatti, W.

2017-04-01

We observed the open clusters M35 and NGC 2158 during the initial K2 campaign (C0). Reducing these data to high-precision photometric timeseries is challenging due to the wide point-spread function (PSF) and the blending of stellar light in such dense regions. We developed an image-subtraction-based K2 reduction pipeline that is applicable to both crowded and sparse stellar fields. We applied our pipeline to the data-rich C0 K2 super stamp, containing the two open clusters, as well as to the neighboring postage stamps. In this paper, we present our image subtraction reduction pipeline and demonstrate that this technique achieves ultra-high photometric precision for sources in the C0 super stamp. We extract the raw light curves of 3960 stars taken from the UCAC4 and EPIC catalogs and de-trend them for systematic effects. We compare our photometric results with the prior reductions published in the literature. For de-trended TFA-corrected sources in the 12-12.25 {{{K}}}{{p}} magnitude range, we achieve a best 6.5-hour window running rms of 35 ppm, falling to 100 ppm for fainter stars in the 14-14.25 {{{K}}}{{p}} magnitude range. For stars with {K}p> 14, our de-trended and 6.5-hour binned light curves achieve the highest photometric precision. Moreover, all our TFA-corrected sources have higher precision on all timescales investigated. This work represents the first published image subtraction analysis of a K2 super stamp. This method will be particularly useful for analyzing the Galactic bulge observations carried out during K2 campaign 9. The raw light curves and the final results of our de-trending processes are publicly available at http://k2.hatsurveys.org/archive/.

Ten-year results of a ponderosa pine progeny test in the Black Hills

Treesearch

Wayne D. Shepperd; Sue E. McElderry

1986-01-01

Ten-year survival and growth of seedlings from 77 parent trees from throughout the Black Hills were compared, using a cluster-analysis technique. Five clusters were identified that account for most of the variability in survival and growth of the open-pollinated families. One cluster, containing 6 families, exhibited exceptional survival and growth. Another, containing...

Cataloging the Praesepe Cluster: Identifying Interlopers and Binary Systems

NASA Astrophysics Data System (ADS)

Lucey, Madeline R.; Gosnell, Natalie M.; Mann, Andrew; Douglas, Stephanie

2018-01-01

We present radial velocity measurements from an ongoing survey of the Praesepe open cluster using the WIYN 3.5m Telescope. Our target stars include 229 early-K to mid-M dwarfs with proper motion memberships that have been observed by the repurposed Kepler mission, K2. With this survey, we will provide a well-constrained membership list of the cluster. By removing interloping stars and determining the cluster binary frequency we can avoid systematic errors in our analysis of the K2 findings and more accurately determine exoplanet properties in the Praesepe cluster. Obtaining accurate exoplanet parameters in open clusters allows us to study the temporal dimension of exoplanet parameter space. We find Praesepe to have a mean radial velocity of 34.09 km/s and a velocity dispersion of 1.13 km/s, which is consistent with previous studies. We derive radial velocity membership probabilities for stars with ≥3 radial velocity measurements and compare against published membership probabilities. We also identify radial velocity variables and potential double-lined spectroscopic binaries. We plan to obtain more observations to determine the radial velocity membership of all the stars in our sample, as well as follow up on radial velocity variables to determine binary orbital solutions.

Impact of Magnetic Draping, Convection, and Field Line Tying on Magnetopause Reconnection Under Northward IMF

NASA Technical Reports Server (NTRS)

Wendel, Deirdre E.; Reiff, Patricia H.; Goldstein, Melvyn L.

2010-01-01

We simulate a northward IMF cusp reconnection event at the magnetopause using the OpenGGCM resistive MHD code. The ACE input data, solar wind parameters, and dipole tilt belong to a 2002 reconnection event observed by IMAGE and Cluster. Based on a fully three-dimensional skeleton separators, nulls, and parallel electric fields, we show magnetic draping, convection, ionospheric field line tying play a role in producing a series of locally reconnecting nulls with flux ropes. The flux ropes in the cusp along the global separator line of symmetry. In 2D projection, the flux ropes the appearance of a tearing mode with a series of 'x's' and 'o's' but bearing a kind of 'guide field' that exists only within the magnetopause. The reconnecting field lines in the string of ropes involve IMF and both open and closed Earth magnetic field lines. The observed magnetic geometry reproduces the findings of a superposed epoch impact parameter study derived from the Cluster magnetometer data for the same event. The observed geometry has repercussions for spacecraft observations of cusp reconnection and for the imposed boundary conditions reconnection simulations.

Combining analytical hierarchy process and agglomerative hierarchical clustering in search of expert consensus in green corridors development management.

PubMed

Shapira, Aviad; Shoshany, Maxim; Nir-Goldenberg, Sigal

2013-07-01

Environmental management and planning are instrumental in resolving conflicts arising between societal needs for economic development on the one hand and for open green landscapes on the other hand. Allocating green corridors between fragmented core green areas may provide a partial solution to these conflicts. Decisions regarding green corridor development require the assessment of alternative allocations based on multiple criteria evaluations. Analytical Hierarchy Process provides a methodology for both a structured and consistent extraction of such evaluations and for the search for consensus among experts regarding weights assigned to the different criteria. Implementing this methodology using 15 Israeli experts-landscape architects, regional planners, and geographers-revealed inherent differences in expert opinions in this field beyond professional divisions. The use of Agglomerative Hierarchical Clustering allowed to identify clusters representing common decisions regarding criterion weights. Aggregating the evaluations of these clusters revealed an important dichotomy between a pragmatist approach that emphasizes the weight of statutory criteria and an ecological approach that emphasizes the role of the natural conditions in allocating green landscape corridors.

Genome mining of the sordarin biosynthetic gene cluster from Sordaria araneosa Cain ATCC 36386: characterization of cycloaraneosene synthase and GDP-6-deoxyaltrose transferase.

PubMed

Kudo, Fumitaka; Matsuura, Yasunori; Hayashi, Takaaki; Fukushima, Masayuki; Eguchi, Tadashi

2016-07-01

Sordarin is a glycoside antibiotic with a unique tetracyclic diterpene aglycone structure called sordaricin. To understand its intriguing biosynthetic pathway that may include a Diels-Alder-type [4+2]cycloaddition, genome mining of the gene cluster from the draft genome sequence of the producer strain, Sordaria araneosa Cain ATCC 36386, was carried out. A contiguous 67 kb gene cluster consisting of 20 open reading frames encoding a putative diterpene cyclase, a glycosyltransferase, a type I polyketide synthase, and six cytochrome P450 monooxygenases were identified. In vitro enzymatic analysis of the putative diterpene cyclase SdnA showed that it catalyzes the transformation of geranylgeranyl diphosphate to cycloaraneosene, a known biosynthetic intermediate of sordarin. Furthermore, a putative glycosyltransferase SdnJ was found to catalyze the glycosylation of sordaricin in the presence of GDP-6-deoxy-d-altrose to give 4'-O-demethylsordarin. These results suggest that the identified sdn gene cluster is responsible for the biosynthesis of sordarin. Based on the isolated potential biosynthetic intermediates and bioinformatics analysis, a plausible biosynthetic pathway for sordarin is proposed.

Combining Analytical Hierarchy Process and Agglomerative Hierarchical Clustering in Search of Expert Consensus in Green Corridors Development Management

NASA Astrophysics Data System (ADS)

Shapira, Aviad; Shoshany, Maxim; Nir-Goldenberg, Sigal

2013-07-01

Environmental management and planning are instrumental in resolving conflicts arising between societal needs for economic development on the one hand and for open green landscapes on the other hand. Allocating green corridors between fragmented core green areas may provide a partial solution to these conflicts. Decisions regarding green corridor development require the assessment of alternative allocations based on multiple criteria evaluations. Analytical Hierarchy Process provides a methodology for both a structured and consistent extraction of such evaluations and for the search for consensus among experts regarding weights assigned to the different criteria. Implementing this methodology using 15 Israeli experts—landscape architects, regional planners, and geographers—revealed inherent differences in expert opinions in this field beyond professional divisions. The use of Agglomerative Hierarchical Clustering allowed to identify clusters representing common decisions regarding criterion weights. Aggregating the evaluations of these clusters revealed an important dichotomy between a pragmatist approach that emphasizes the weight of statutory criteria and an ecological approach that emphasizes the role of the natural conditions in allocating green landscape corridors.

qSR: a quantitative super-resolution analysis tool reveals the cell-cycle dependent organization of RNA Polymerase I in live human cells.

PubMed

Andrews, J O; Conway, W; Cho, W -K; Narayanan, A; Spille, J -H; Jayanth, N; Inoue, T; Mullen, S; Thaler, J; Cissé, I I

2018-05-09

We present qSR, an analytical tool for the quantitative analysis of single molecule based super-resolution data. The software is created as an open-source platform integrating multiple algorithms for rigorous spatial and temporal characterizations of protein clusters in super-resolution data of living cells. First, we illustrate qSR using a sample live cell data of RNA Polymerase II (Pol II) as an example of highly dynamic sub-diffractive clusters. Then we utilize qSR to investigate the organization and dynamics of endogenous RNA Polymerase I (Pol I) in live human cells, throughout the cell cycle. Our analysis reveals a previously uncharacterized transient clustering of Pol I. Both stable and transient populations of Pol I clusters co-exist in individual living cells, and their relative fraction vary during cell cycle, in a manner correlating with global gene expression. Thus, qSR serves to facilitate the study of protein organization and dynamics with very high spatial and temporal resolutions directly in live cell.

Hubble space telescope observations of young star clusters in NGC-4038/4039, 'the antennae' galaxies

NASA Technical Reports Server (NTRS)

Whitmore, Bradley C.; Schweizer, Francois

1995-01-01

New, high-resolution images of the disks of NGC 4038/4039 obtained with the Wide Field Camera of the Hubble Space Telescope (HST) are presented. NGC 4038/4039, nicknamed The Antennae, is a prototypical example of a pair of colliding galaxies believed to be at an early stage of a merger. Down to the limiting magnitude of V approximately 23 mag, the HST images reveal a population of over 700 blue pointlike objects within the disks. The mean absolute magnitude of these objects is M(sub V) = -11 mag, with the brightest objects reaching M(sub V) approximately -15. Their mean apparent color indices ar U - V = -0.7 mag and V - 1 = 0.8 mag on the Johnson UVI passband system, while their mean indices corrected for internal reddening are (u - v)(sub 0) = -1.0 mag and (V - I(sub 0) = 0.5. Their mean effective radius, determined from slightly resolved images, is 18 pc (for H(sub 0) = 50 km/s /Mpc). Based on their luminosities and resolution, most of these objects cannot be individual stars, but are likely young compact star clusters. The brighter ones are similar to the objects found in NGC 1275 and NGC 7252, which appear to be young globular clusters formed during recent galazy mergers. Based on their U - V and V - I colors, the brightest, bluest clusters of NGC 4038/4039 appear to be less than 10 Myr old. Most of these bright clusters are relatively tightly clustered themselves, with typically a dozen individual clusters belonging to a complex identified as a giant H II region from ground-based observations. The cluster luminosity function (LF) is approximately a power law, phi(L)dL proportional to L(exp -1.78+/-0.05)dL, with no hint of a turnover at fainter magnitudes. This power-law shape agrees with the LF of Magellanic Cloud clusters and Galactic open clusters, but differs from the LF of old globular cluster systems that is typically Gaussian with a Full Width at Half Maximum (FWHM) of approximately 3 mag. Besides the blue clusters, we also find about a dozen extremely red objects with V - I greater than 3.0. The highest number density of these red objects is found in the SE quadrant, where star formation appears to be most recent. We propose that these objects may be very young star clusters still embedded in their placental dust cocoons.

Clusters and the new economics of competition.

PubMed

Porter, M E

1998-01-01

Economic geography in an era of global competition poses a paradox. In theory, location should no longer be a source of competitive advantage. Open global markets, rapid transportation, and high-speed communications should allow any company to source any thing from any place at any time. But in practice, Michael Porter demonstrates, location remains central to competition. Today's economic map of the world is characterized by what Porter calls clusters: critical masses in one place of linked industries and institutions--from suppliers to universities to government agencies--that enjoy unusual competitive success in a particular field. The most famous example are found in Silicon Valley and Hollywood, but clusters dot the world's landscape. Porter explains how clusters affect competition in three broad ways: first, by increasing the productivity of companies based in the area; second, by driving the direction and pace of innovation; and third, by stimulating the formation of new businesses within the cluster. Geographic, cultural, and institutional proximity provides companies with special access, closer relationships, better information, powerful incentives, and other advantages that are difficult to tap from a distance. The more complex, knowledge-based, and dynamic the world economy becomes, the more this is true. Competitive advantage lies increasingly in local things--knowledge, relationships, and motivation--that distant rivals cannot replicate. Porter challenges the conventional wisdom about how companies should be configured, how institutions such as universities can contribute to competitive success, and how governments can promote economic development and prosperity.

The gap in the color-magnitude diagram of NGC 2420: A test of convective overshoot and cluster age

NASA Technical Reports Server (NTRS)

Demarque, Pierre; Sarajedini, Ata; Guo, X.-J.

1994-01-01

Theoretical isochrones have been constructed using the OPAL opacities specifically to study the color-magnitude diagram of the open star cluster NGC 2420. This cluster provides a rare test of core convection in intermediate-mass stars. At the same time, its age is of interest because of its low metallicity and relatively high Galactic latitude for an open cluster. The excellent color-magnitude diagram constructed by Anthony-Twarog et al. (1990) allows a detailed fit of the isochrones to the photometric data. We discuss the importance of convective overshoot at the convective core edge in determining the morphology of the gap located near the main-sequence turnoff. We find that given the assumptions made in the models, a modest amount of overshoot (0.23 H(sub p)) is required for the best fit. Good agreement is achieved with all features of the turnoff gap for a cluster age of 2.4 +/- 0.2 Gyr. We note that a photometrically complete luminosity function near the main-sequence turnoff and subgiant branch would also provide an important test of the overshoot models.

A Photometric Survey of the Open Clusters NGC 7789 and M67

NASA Astrophysics Data System (ADS)

Janes, Kenneth

2010-01-01

Although there is strong evidence that stellar activity declines as a star ages, beyond about the age of the Hyades (600 Myr) there is little direct confirmation of this decline in stars of known age. This report is an update of an earlier report (Hayes-Gehrke, et al., 2004, AJ, 128, 2862) of a long-term project to explore stellar activity in old open clusters. I have now accumulated 12 years of photometry of the old clusters NGC 7789 (about 1.8 Gyr) and M 67 (about 4 Gyr). An analysis of these data has revealed a substantial number of low-amplitude variable stars in both clusters, including a number of previously-discovered eclipsing binary stars, and several stars near the main sequence turnoff of both clusters that exhibit apparently erratic variations. Some of the M 67 erratics are known X-ray sources. On the main sequence, the large majority of stars show little or no evidence for variability at the 0.1% - 0.2% level, consistent with a regular systematic decline in activity level with age.

BioContainers: an open-source and community-driven framework for software standardization.

PubMed

da Veiga Leprevost, Felipe; Grüning, Björn A; Alves Aflitos, Saulo; Röst, Hannes L; Uszkoreit, Julian; Barsnes, Harald; Vaudel, Marc; Moreno, Pablo; Gatto, Laurent; Weber, Jonas; Bai, Mingze; Jimenez, Rafael C; Sachsenberg, Timo; Pfeuffer, Julianus; Vera Alvarez, Roberto; Griss, Johannes; Nesvizhskii, Alexey I; Perez-Riverol, Yasset

2017-08-15

BioContainers (biocontainers.pro) is an open-source and community-driven framework which provides platform independent executable environments for bioinformatics software. BioContainers allows labs of all sizes to easily install bioinformatics software, maintain multiple versions of the same software and combine tools into powerful analysis pipelines. BioContainers is based on popular open-source projects Docker and rkt frameworks, that allow software to be installed and executed under an isolated and controlled environment. Also, it provides infrastructure and basic guidelines to create, manage and distribute bioinformatics containers with a special focus on omics technologies. These containers can be integrated into more comprehensive bioinformatics pipelines and different architectures (local desktop, cloud environments or HPC clusters). The software is freely available at github.com/BioContainers/. yperez@ebi.ac.uk. © The Author(s) 2017. Published by Oxford University Press.

BioContainers: an open-source and community-driven framework for software standardization

PubMed Central

da Veiga Leprevost, Felipe; Grüning, Björn A.; Alves Aflitos, Saulo; Röst, Hannes L.; Uszkoreit, Julian; Barsnes, Harald; Vaudel, Marc; Moreno, Pablo; Gatto, Laurent; Weber, Jonas; Bai, Mingze; Jimenez, Rafael C.; Sachsenberg, Timo; Pfeuffer, Julianus; Vera Alvarez, Roberto; Griss, Johannes; Nesvizhskii, Alexey I.; Perez-Riverol, Yasset

2017-01-01

Abstract Motivation BioContainers (biocontainers.pro) is an open-source and community-driven framework which provides platform independent executable environments for bioinformatics software. BioContainers allows labs of all sizes to easily install bioinformatics software, maintain multiple versions of the same software and combine tools into powerful analysis pipelines. BioContainers is based on popular open-source projects Docker and rkt frameworks, that allow software to be installed and executed under an isolated and controlled environment. Also, it provides infrastructure and basic guidelines to create, manage and distribute bioinformatics containers with a special focus on omics technologies. These containers can be integrated into more comprehensive bioinformatics pipelines and different architectures (local desktop, cloud environments or HPC clusters). Availability and Implementation The software is freely available at github.com/BioContainers/. Contact yperez@ebi.ac.uk PMID:28379341

Clustering-based energy-saving algorithm in ultra-dense network

NASA Astrophysics Data System (ADS)

Huang, Junwei; Zhou, Pengguang; Teng, Deyang; Zhang, Renchi; Xu, Hao

2017-06-01

In Ultra-dense Networks (UDN), dense deployment of low power small base stations will cause serious small cells interference and a large amount of energy consumption. The purpose of this paper is to explore the method of reducing small cells interference and energy saving system in UDN, and we innovatively propose a sleep-waking-active (SWA) scheme. The scheme decreases the user outage causing by failure to detect users’ service requests, shortens the opening time of active base stations directly switching to sleep mode; we further proposes a Vertex Surrounding Clustering(VSC) algorithm, which first colours the small cells with the most strongest interference and next extends to the adjacent small cells. VSC algorithm can use the least colour to stain the small cell, reduce the number of iterations and promote the efficiency of colouring. The simulation results show that SWA scheme can effectively improve the system Energy Efficiency (EE), the VSC algorithm can reduce the small cells interference and optimize the users’ Spectrum Efficiency (SE) and throughput.

On the determination of age and mass functions of stars in young open star clusters from the analysis of their luminosity functions

NASA Astrophysics Data System (ADS)

Piskunov, A. E.; Belikov, A. N.; Kharchenko, N. V.; Sagar, R.; Subramaniam, A.

2004-04-01

We construct the observed luminosity functions of the remote young open clusters NGC 2383, 2384, 4103, 4755, 7510 and Hogg 15 from CCD observations of them. The observed LFs are corrected for field star contamination determined with the help of a Galactic star count model. In the case of Hogg 15 and NGC 2383 we also consider the additional contamination from neighbouring clusters NGC 4609 and 2384, respectively. These corrections provide a realistic pattern of cluster LF in the vicinity of the main-sequence (MS) turn-on point and at fainter magnitudes reveal the so-called H-feature arising as a result of the transition of the pre-MS phase to the MS, which is dependent on the cluster age. The theoretical LFs are constructed representing a cluster population model with continuous star formation for a short time-scale and a power-law initial mass function (IMF), and these are fitted to the observed LF. As a result, we are able to determine for each cluster a set of parameters describing the cluster population (the age, duration of star formation, IMF slope and percentage of field star contamination). It is found that in spite of the non-monotonic behaviour of observed LFs, cluster IMFs can be described as power-law functions with slopes similar to Salpeter's value. The present main-sequence turn-on cluster ages are several times lower than those derived from the fitting of theoretical isochrones to the turn-off region of the upper main sequences.

Star Formation in NGC 6531-Evidence From the age Spread and Initial Mass Function

NASA Astrophysics Data System (ADS)

Forbes, Douglas

1996-09-01

The results of a photometric UBV study of the young open cluster NGC 6531 are presented. The cluster is found to have a mean reddening E(B-V)=0.28±0.04 (s.d.) and distance modulus (V0-Mv)=10.70±0.13 (s.e.), and 105±11 likely cluster members have been identified within the cluster coronal radius of 9 arcmin. A comparison of the high-luminosity end of the cluster color-magnitude diagram to the evolutionary models by Maeder & Meynet [A&AS, 76, 411(1988)] suggests a nuclear age of (8±2) Myr. The very clear gap in the distribution of stars with 0≤(B-V)0≤0.20, corresponding to the "burn-off" of 3He in stars contracting to the main sequence [Ulrich, ApJ, 168, 57 (1971)], implies a contraction age of (8±3) Myr. There would seem to be no evidence of a spread in the ages of cluster stars, as has been observed in several other young open clusters [Herbst & Miller, AJ, 87, 1478 (1982)]. The initial mass function (IMF) constructed from the cluster luminosity function and the mass-luminosity relation given by Scab (1986) shows good agreement with the field star IMF, and with the IMFS of a number of clusters of similar age and richness. The relative deficiency of low-mass stars seen by Herbst and Miller in NGC 3293 (a cluster of quite similar age and reddening) is not evident in NGC 6531.

Analysis of Parallel Algorithms on SMP Node and Cluster of Workstations Using Parallel Programming Models with New Tile-based Method for Large Biological Datasets.

PubMed

Shrimankar, D D; Sathe, S R

2016-01-01

Sequence alignment is an important tool for describing the relationships between DNA sequences. Many sequence alignment algorithms exist, differing in efficiency, in their models of the sequences, and in the relationship between sequences. The focus of this study is to obtain an optimal alignment between two sequences of biological data, particularly DNA sequences. The algorithm is discussed with particular emphasis on time, speedup, and efficiency optimizations. Parallel programming presents a number of critical challenges to application developers. Today's supercomputer often consists of clusters of SMP nodes. Programming paradigms such as OpenMP and MPI are used to write parallel codes for such architectures. However, the OpenMP programs cannot be scaled for more than a single SMP node. However, programs written in MPI can have more than single SMP nodes. But such a programming paradigm has an overhead of internode communication. In this work, we explore the tradeoffs between using OpenMP and MPI. We demonstrate that the communication overhead incurs significantly even in OpenMP loop execution and increases with the number of cores participating. We also demonstrate a communication model to approximate the overhead from communication in OpenMP loops. Our results are astonishing and interesting to a large variety of input data files. We have developed our own load balancing and cache optimization technique for message passing model. Our experimental results show that our own developed techniques give optimum performance of our parallel algorithm for various sizes of input parameter, such as sequence size and tile size, on a wide variety of multicore architectures.

Analysis of Parallel Algorithms on SMP Node and Cluster of Workstations Using Parallel Programming Models with New Tile-based Method for Large Biological Datasets

PubMed Central

Shrimankar, D. D.; Sathe, S. R.

2016-01-01

Sequence alignment is an important tool for describing the relationships between DNA sequences. Many sequence alignment algorithms exist, differing in efficiency, in their models of the sequences, and in the relationship between sequences. The focus of this study is to obtain an optimal alignment between two sequences of biological data, particularly DNA sequences. The algorithm is discussed with particular emphasis on time, speedup, and efficiency optimizations. Parallel programming presents a number of critical challenges to application developers. Today’s supercomputer often consists of clusters of SMP nodes. Programming paradigms such as OpenMP and MPI are used to write parallel codes for such architectures. However, the OpenMP programs cannot be scaled for more than a single SMP node. However, programs written in MPI can have more than single SMP nodes. But such a programming paradigm has an overhead of internode communication. In this work, we explore the tradeoffs between using OpenMP and MPI. We demonstrate that the communication overhead incurs significantly even in OpenMP loop execution and increases with the number of cores participating. We also demonstrate a communication model to approximate the overhead from communication in OpenMP loops. Our results are astonishing and interesting to a large variety of input data files. We have developed our own load balancing and cache optimization technique for message passing model. Our experimental results show that our own developed techniques give optimum performance of our parallel algorithm for various sizes of input parameter, such as sequence size and tile size, on a wide variety of multicore architectures. PMID:27932868

Detecting cancer clusters in a regional population with local cluster tests and Bayesian smoothing methods: a simulation study

PubMed Central

2013-01-01

Background There is a rising public and political demand for prospective cancer cluster monitoring. But there is little empirical evidence on the performance of established cluster detection tests under conditions of small and heterogeneous sample sizes and varying spatial scales, such as are the case for most existing population-based cancer registries. Therefore this simulation study aims to evaluate different cluster detection methods, implemented in the open soure environment R, in their ability to identify clusters of lung cancer using real-life data from an epidemiological cancer registry in Germany. Methods Risk surfaces were constructed with two different spatial cluster types, representing a relative risk of RR = 2.0 or of RR = 4.0, in relation to the overall background incidence of lung cancer, separately for men and women. Lung cancer cases were sampled from this risk surface as geocodes using an inhomogeneous Poisson process. The realisations of the cancer cases were analysed within small spatial (census tracts, N = 1983) and within aggregated large spatial scales (communities, N = 78). Subsequently, they were submitted to the cluster detection methods. The test accuracy for cluster location was determined in terms of detection rates (DR), false-positive (FP) rates and positive predictive values. The Bayesian smoothing models were evaluated using ROC curves. Results With moderate risk increase (RR = 2.0), local cluster tests showed better DR (for both spatial aggregation scales > 0.90) and lower FP rates (both < 0.05) than the Bayesian smoothing methods. When the cluster RR was raised four-fold, the local cluster tests showed better DR with lower FPs only for the small spatial scale. At a large spatial scale, the Bayesian smoothing methods, especially those implementing a spatial neighbourhood, showed a substantially lower FP rate than the cluster tests. However, the risk increases at this scale were mostly diluted by data aggregation. Conclusion High resolution spatial scales seem more appropriate as data base for cancer cluster testing and monitoring than the commonly used aggregated scales. We suggest the development of a two-stage approach that combines methods with high detection rates as a first-line screening with methods of higher predictive ability at the second stage. PMID:24314148

The Googlization of health research: from disruptive innovation to disruptive ethics.

PubMed

Sharon, Tamar

2016-11-01

Consumer-oriented mobile technologies offer new ways of capturing multidimensional health data, and are increasingly seen as facilitators of medical research. This has opened the way for large consumer tech companies, like Apple, Google, Amazon and Facebook, to enter the space of health research, offering new methods for collecting, storing and analyzing health data. While these developments are often portrayed as 'disrupting' research in beneficial ways, they also raise many ethical issues. These can be organized into three clusters: questions concerning the quality of research; privacy/informed consent; and new power asymmetries based on access to data and control over technological infrastructures. I argue that this last cluster, insofar as it may affect future research agendas, deserves more critical attention.

The Chandra Strong Lens Sample: Revealing Baryonic Physics In Strong Lensing Selected Clusters

NASA Astrophysics Data System (ADS)

Bayliss, Matthew

2017-08-01

We propose for Chandra imaging of the hot intra-cluster gas in a unique new sample of 29 galaxy clusters selected purely on their strong gravitational lensing signatures. This will be the first program targeting a purely strong lensing selected cluster sample, enabling new comparisons between the ICM properties and scaling relations of strong lensing and mass/ICM selected cluster samples. Chandra imaging, combined with high precision strong lens models, ensures powerful constraints on the distribution and state of matter in the cluster cores. This represents a novel angle from which we can address the role played by baryonic physics |*| the infamous |*|gastrophysics|*| in shaping the cores of massive clusters, and opens up an exciting new galaxy cluster discovery space with Chandra.

The Chandra Strong Lens Sample: Revealing Baryonic Physics In Strong Lensing Selected Clusters

NASA Astrophysics Data System (ADS)

Bayliss, Matthew

2017-09-01

We propose for Chandra imaging of the hot intra-cluster gas in a unique new sample of 29 galaxy clusters selected purely on their strong gravitational lensing signatures. This will be the first program targeting a purely strong lensing selected cluster sample, enabling new comparisons between the ICM properties and scaling relations of strong lensing and mass/ICM selected cluster samples. Chandra imaging, combined with high precision strong lens models, ensures powerful constraints on the distribution and state of matter in the cluster cores. This represents a novel angle from which we can address the role played by baryonic physics -- the infamous ``gastrophysics''-- in shaping the cores of massive clusters, and opens up an exciting new galaxy cluster discovery space with Chandra.

Supramolecular clusters between carbohydrates and concave pyridines. Detection in the gas phase by resonance-enhanced multi-photon ionization reflectron time-of-flight mass spectrometer.

PubMed

Liebig, Timo; Lüning, Ulrich; Grotemeyer, Jürgen

2006-01-01

For the first time the formation of supramolecular clusters between concave pyridines and different carbohydrates could be observed in the gas phase. The different clusters have been investigated by means of laser desorption into a supersonic beam followed by resonant multi photon excitation yielding mass spectra with high intensity of the different cluster. These preliminary results open a way for the investigations of the hydrogen bonds in these compounds.

Dynamic VM Provisioning for TORQUE in a Cloud Environment

NASA Astrophysics Data System (ADS)

Zhang, S.; Boland, L.; Coddington, P.; Sevior, M.

2014-06-01

Cloud computing, also known as an Infrastructure-as-a-Service (IaaS), is attracting more interest from the commercial and educational sectors as a way to provide cost-effective computational infrastructure. It is an ideal platform for researchers who must share common resources but need to be able to scale up to massive computational requirements for specific periods of time. This paper presents the tools and techniques developed to allow the open source TORQUE distributed resource manager and Maui cluster scheduler to dynamically integrate OpenStack cloud resources into existing high throughput computing clusters.

Orbital Analysis of Two Triple Systems in the Open Cluster NGC 2516

NASA Astrophysics Data System (ADS)

Veramendi, M. E.; González, J. F.

2010-12-01

We report the discovery of two hierarchical triple systems in the open cluster NGC 2516. Both systems are double-lined spectroscopic binaries whose center-of-mass velocity varies in a time scale of a few years. The system BDA 19 consists of an eccentric spectroscopic binary with a period of 8.7 days and a third body orbiting with a period of about 3300 days. The close pair in the triple BDA 2 has an orbital period of 11.2 days and contains a HgMn star.

VizieR Online Data Catalog: WIYN open cluster study. LIX. RVs of NGC 6791 (Tofflemire+, 2014)

NASA Astrophysics Data System (ADS)

Tofflemire, B. M.; Gosnell, N. M.; Mathieu, R. D.; Platais, I.

2014-11-01

Our observations utilize the Hydra Multi-Object Spectrograph (MOS) on the WIYN 3.5m telescope. We use 3.1'' diameter fibers along with the bench spectrograph echelle grating, resulting in a spectral resolution of ~20000 (15km/s). See Geller et al. 2008 (cat. J/AJ/135/2264; Paper XXXII) for full details about our observing and data reduction procedures. Variations in our methods from previous WIYN Open Cluster Study (WOCS) radial velocity papers are given in Section 3. (3 data files).

Observations and analysis of the contact binary H 235 in the open cluster NGC 752

NASA Astrophysics Data System (ADS)

Milone, E. F.; Stagg, C. R.; Sugars, B. A.; McVean, J. R.; Schiller, S. J.; Kallrath, J.; Bradstreet, D. H.

1995-01-01

The short-period variable star Heinemann 235 in the open cluster NGC 752 has been identified as a contact binary with a variable period of about 0 d 4118. BVRI light curves and radial velocity curves have been obtained and analyzed with enhanced versions of the Wilson-Devinney light curve program. We find that the system is best modeled as an A-type W UMa system, with a contact parameter of 0.21 +/- 0.11. The masses of the components are found to be 1.18 +/- 0.17 and 0.24 +/- 0.04 solar mass, with bolometric magnitudes of 3.60 +/- 0.10 and 5.21 +/- 0.13, for the hotter (6500 K, assumed) and cooler (6421 K) components, respectively, with Delta T=79 +/- 25 K. The distance to the binary is established at 381 +/- 17 pc. H235 becomes one of a relatively small number of open-cluster contact systems with detailed light curve analysis for which an age may be estimated. If it is coeval with the cluster, and with the detached eclipsing and double-lined spectroscopic binary H219 (DS And), H235 is approximately 1.8 Gyr old, and may provide a fiducial point for the evolution of contact systems. There is, however, evidence for dynamical evolution of the cluster and the likelihood of weak interactions over the age of the binary precludes the determination of its initial state with certainty.

Rotational and radial velocities of 1.3-2.2 M {sub ☉} red giants in open clusters

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carlberg, Joleen K., E-mail: jcarlberg@dtm.ciw.edu

2014-06-01

This study presents the rotational distribution of red giant (RG) stars in 11 old to intermediate age open clusters. The masses of these stars are all above the Kraft break, so they lose negligible amounts of their birth angular momentum (AM) during the main-sequence (MS) evolution. However, they do span a mass range with quite different AM distributions imparted during formation, with the stars less massive than ∼1.6M {sub ☉} arriving on the MS with lower rotation rates than the more massive stars. The majority of RGs in this study are slow rotators across the entire red giant branch regardlessmore » of mass, supporting the picture that intermediate-mass stars rapidly spin down when they evolve off the MS and develop convection zones capable of driving a magnetic dynamo. Nevertheless, a small fraction of RGs in open clusters show some level of enhanced rotation, and faster rotators are as common in these clusters as in the field RG population. Most of these enhanced rotators appear to be red clump stars, which is also true of the underlying stellar sample, while others are clearly RGs that are above or below the clump. In addition to rotational velocities, the radial velocities (RVs) and membership probabilities of individual stars are also presented. Cluster heliocentric RVs for NGC 6005 and Pismis 18 are reported for the first time.« less

Wild Duck Cluster

NASA Technical Reports Server (NTRS)

2005-01-01

On April 7, 2005, the Deep Impact spacecraft's Impactor Target Sensor camera recorded this image of M11, the Wild Duck cluster, a galactic open cluster located 6 thousand light years away. The camera is located on the impactor spacecraft, which will image comet Tempel 1 beginning 22 hours before impact until about 2 seconds before impact. Impact with comet Tempel 1 is planned for July 4, 2005.

A mass transfer origin for blue stragglers in NGC 188 as revealed by half-solar-mass companions.

PubMed

Geller, Aaron M; Mathieu, Robert D

2011-10-19

In open star clusters, where all members formed at about the same time, blue straggler stars are typically observed to be brighter and bluer than hydrogen-burning main-sequence stars, and therefore should already have evolved into giant stars and stellar remnants. Correlations between blue straggler frequency and cluster binary star fraction, core mass and radial position suggest that mass transfer or mergers in binary stars dominates the production of blue stragglers in open clusters. Analytic models, detailed observations and sophisticated N-body simulations, however, argue in favour of stellar collisions. Here we report that the blue stragglers in long-period binaries in the old (7 × 10(9)-year) open cluster NGC 188 have companions with masses of about half a solar mass, with a surprisingly narrow mass distribution. This conclusively rules out a collisional origin, as the collision hypothesis predicts a companion mass distribution with significantly higher masses. Mergers in hierarchical triple stars are marginally permitted by the data, but the observations do not favour this hypothesis. The data are highly consistent with a mass transfer origin for the long-period blue straggler binaries in NGC 188, in which the companions would be white dwarfs of about half a solar mass.

Interacting star clusters in the Large Magellanic Cloud. Overmerging problem solved by cluster group formation

NASA Astrophysics Data System (ADS)

Leon, Stéphane; Bergond, Gilles; Vallenari, Antonella

1999-04-01

We present the tidal tail distributions of a sample of candidate binary clusters located in the bar of the Large Magellanic Cloud (LMC). One isolated cluster, SL 268, is presented in order to study the effect of the LMC tidal field. All the candidate binary clusters show tidal tails, confirming that the pairs are formed by physically linked objects. The stellar mass in the tails covers a large range, from 1.8x 10(3) to 3x 10(4) \\msun. We derive a total mass estimate for SL 268 and SL 356. At large radii, the projected density profiles of SL 268 and SL 356 fall off as r(-gamma ) , with gamma = 2.27 and gamma =3.44, respectively. Out of 4 pairs or multiple systems, 2 are older than the theoretical survival time of binary clusters (going from a few 10(6) years to 10(8) years). A pair shows too large age difference between the components to be consistent with classical theoretical models of binary cluster formation (Fujimoto & Kumai \\cite{fujimoto97}). We refer to this as the ``overmerging'' problem. A different scenario is proposed: the formation proceeds in large molecular complexes giving birth to groups of clusters over a few 10(7) years. In these groups the expected cluster encounter rate is larger, and tidal capture has higher probability. Cluster pairs are not born together through the splitting of the parent cloud, but formed later by tidal capture. For 3 pairs, we tentatively identify the star cluster group (SCG) memberships. The SCG formation, through the recent cluster starburst triggered by the LMC-SMC encounter, in contrast with the quiescent open cluster formation in the Milky Way can be an explanation to the paucity of binary clusters observed in our Galaxy. Based on observations collected at the European Southern Observatory, La Silla, Chile}

Variability survey of brightest stars in selected OB associations

NASA Astrophysics Data System (ADS)

Laur, Jaan; Kolka, Indrek; Eenmäe, Tõnis; Tuvikene, Taavi; Leedjärv, Laurits

2017-02-01

Context. The stellar evolution theory of massive stars remains uncalibrated with high-precision photometric observational data mainly due to a small number of luminous stars that are monitored from space. Automated all-sky surveys have revealed numerous variable stars but most of the luminous stars are often overexposed. Targeted campaigns can improve the time base of photometric data for those objects. Aims: The aim of this investigation is to study the variability of luminous stars at different timescales in young open clusters and OB associations. Methods: We monitored 22 open clusters and associations from 2011 to 2013 using a 0.25-m telescope. Variable stars were detected by comparing the overall light-curve scatter with measurement uncertainties. Variability was analysed by the light curve feature extraction tool FATS. Periods of pulsating stars were determined using the discrete Fourier transform code SigSpec. We then classified the variable stars based on their pulsation periods and available spectral information. Results: We obtained light curves for more than 20 000 sources of which 354 were found to be variable. Amongst them we find 80 eclipsing binaries, 31 α Cyg, 13 β Cep, 62 Be, 16 slowly pulsating B, 7 Cepheid, 1 γ Doradus, 3 Wolf-Rayet and 63 late-type variable stars. Up to 55% of these stars are potential new discoveries as they are not present in the Variable Star Index (VSX) database. We find the cluster membership fraction for variable stars to be 13% with an upper limit of 35%. Variable star catalogue (Tables A.1-A.10) and light curves are only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/598/A108

Technical structure of the global nanoscience and nanotechnology literature

NASA Astrophysics Data System (ADS)

Kostoff, Ronald N.; Koytcheff, Raymond G.; Lau, Clifford G. Y.

2007-10-01

Text mining was used to extract technical intelligence from the open source global nanotechnology and nanoscience research literature. An extensive nanotechnology/nanoscience-focused query was applied to the Science Citation Index/Social Science Citation Index (SCI/SSCI) databases. The nanotechnology/nanoscience research literature technical structure (taxonomy) was obtained using computational linguistics/document clustering and factor analysis. The infrastructure (prolific authors, key journals/institutions/countries, most cited authors/journals/documents) for each of the clusters generated by the document clustering algorithm was obtained using bibliometrics. Another novel addition was the use of phrase auto-correlation maps to show technical thrust areas based on phrase co-occurrence in Abstracts, and the use of phrase-phrase cross-correlation maps to show technical thrust areas based on phrase relations due to the sharing of common co-occurring phrases. The ˜400 most cited nanotechnology papers since 1991 were grouped, and their characteristics generated. Whereas the main analysis provided technical thrusts of all nanotechnology papers retrieved, analysis of the most cited papers allowed their characteristics to be displayed. Finally, most cited papers from selected time periods were extracted, along with all publications from those time periods, and the institutions and countries were compared based on their representation in the most cited documents list relative to their representation in the most publications list.

Performance evaluation of PCA-based spike sorting algorithms.

PubMed

Adamos, Dimitrios A; Kosmidis, Efstratios K; Theophilidis, George

2008-09-01

Deciphering the electrical activity of individual neurons from multi-unit noisy recordings is critical for understanding complex neural systems. A widely used spike sorting algorithm is being evaluated for single-electrode nerve trunk recordings. The algorithm is based on principal component analysis (PCA) for spike feature extraction. In the neuroscience literature it is generally assumed that the use of the first two or most commonly three principal components is sufficient. We estimate the optimum PCA-based feature space by evaluating the algorithm's performance on simulated series of action potentials. A number of modifications are made to the open source nev2lkit software to enable systematic investigation of the parameter space. We introduce a new metric to define clustering error considering over-clustering more favorable than under-clustering as proposed by experimentalists for our data. Both the program patch and the metric are available online. Correlated and white Gaussian noise processes are superimposed to account for biological and artificial jitter in the recordings. We report that the employment of more than three principal components is in general beneficial for all noise cases considered. Finally, we apply our results to experimental data and verify that the sorting process with four principal components is in agreement with a panel of electrophysiology experts.

A framework using cluster-based hybrid network architecture for collaborative virtual surgery.

PubMed

Qin, Jing; Choi, Kup-Sze; Poon, Wai-Sang; Heng, Pheng-Ann

2009-12-01

Research on collaborative virtual environments (CVEs) opens the opportunity for simulating the cooperative work in surgical operations. It is however a challenging task to implement a high performance collaborative surgical simulation system because of the difficulty in maintaining state consistency with minimum network latencies, especially when sophisticated deformable models and haptics are involved. In this paper, an integrated framework using cluster-based hybrid network architecture is proposed to support collaborative virtual surgery. Multicast transmission is employed to transmit updated information among participants in order to reduce network latencies, while system consistency is maintained by an administrative server. Reliable multicast is implemented using distributed message acknowledgment based on cluster cooperation and sliding window technique. The robustness of the framework is guaranteed by the failure detection chain which enables smooth transition when participants join and leave the collaboration, including normal and involuntary leaving. Communication overhead is further reduced by implementing a number of management approaches such as computational policies and collaborative mechanisms. The feasibility of the proposed framework is demonstrated by successfully extending an existing standalone orthopedic surgery trainer into a collaborative simulation system. A series of experiments have been conducted to evaluate the system performance. The results demonstrate that the proposed framework is capable of supporting collaborative surgical simulation.

Polymer-coated nanoparticles: Carrier platforms for hydrophobic water- and air-sensitive metallo-organic compounds.

PubMed

Valdeperez, Daniel; Wang, Tianqiang; Eußner, Jens P; Weinert, Bastian; Hao, Jianyuan; Parak, Wolfgang J; Dehnen, Stefanie; Pelaz, Beatriz

2017-03-01

Many of the relevant compounds for anticancer therapy are metal-based compounds (metallodrugs), being platinum-based drugs such as cisplatin, carboplatin (Paraplatin ® ), and oxaliplatin (Eloxatin ® ) the most widely used. Despite this, their application is limited by issues such as cell-acquired platinum resistance and manifold side effects following systemic delivery. Thus, the development of new metal-based compounds is highly needed. The catalytic properties of a variety of metal-based compounds are nowadays very well known, which opens new opportunities to take advantage of them inside living cells or organisms. However, many of these compounds are hydrophobic and thus not soluble in aqueous solution, as they lack stability against water or oxygen presence. Thus, versatile platforms capable of enhancing the features of these compounds in aqueous solutions are of importance in the development of new drugs. Surface engineered nanoparticles may render metallodrugs with good colloidal stability in water and in complex media containing high salt concentration and/or proteins. Herein, polymer coated nanoparticles are proposed as a platform to link insoluble and water/oxygen sensitive drugs. The linkage of insoluble and oxygen sensitive tin clusters to nanoparticles is presented, aiming to enhance both, the solubility and the stability of these compounds in water, which may be an alternative approach in the development of metal-based drugs. The formation of the cluster-nanoparticle system was confirmed via inductively coupled plasma mass spectrometry experiments. The catalytic activity and the stability of the cluster in water were studied through the reduction of methylene blue. Results demonstrate that in fact the tin clusters could be transferred into aqueous solution and retained their catalytic activity. Copyright © 2016 Elsevier Ltd. All rights reserved.

Time-Series Monitoring of Open Star Clusters

NASA Astrophysics Data System (ADS)

Hojaev, A. S.; Semakov, D. G.

2006-08-01

Star clusters especially a compact ones (with diameter of few to ten arcmin) are suitable targets to search of light variability for orchestera of stars by means of ordinary Casegrain telescope plus CCD system. A special patroling with short time-fixed exposures and mmag accuracy could be used also to study of stellar oscillation for group of stars simultaneously. The last can be carried out both separately from one site and within international campaigns. Detection and study of optical variability of X-ray sources including X-ray binaries with compact objects might be as a result of a long-term monitoring of such clusters as well. We present the program of open star clusters monitoring with Zeiss 1 meter RCC telescope of Maidanak observatory has been recently automated. In combination with quite good seeing at this observatory (see, e.g., Sarazin, M. 1999, URL http://www.eso.org/gen-fac/pubs/astclim/) the automatic telescope equipped with large-format (2KX2K) CCD camera AP-10 available will allow to collect homogenious time-series for analysis. We already started this program in 2001 and had a set of patrol observations with Zeiss 0.6 meter telescope and AP-10 camera in 2003. 7 compact open clusters in the Milky Way (NGC 7801, King1, King 13, King18, King20, Berkeley 55, IC 4996) have been monitored for stellar variability and some results of photometry will be presented. A few interesting variables were discovered and dozens were suspected for variability to the moment in these clusters for the first time. We have made steps to join the Whole-Earth Telescope effort in its future campaigns.

ClusterTAD: an unsupervised machine learning approach to detecting topologically associated domains of chromosomes from Hi-C data.

PubMed

Oluwadare, Oluwatosin; Cheng, Jianlin

2017-11-14

With the development of chromosomal conformation capturing techniques, particularly, the Hi-C technique, the study of the spatial conformation of a genome is becoming an important topic in bioinformatics and computational biology. The Hi-C technique can generate genome-wide chromosomal interaction (contact) data, which can be used to investigate the higher-level organization of chromosomes, such as Topologically Associated Domains (TAD), i.e., locally packed chromosome regions bounded together by intra chromosomal contacts. The identification of the TADs for a genome is useful for studying gene regulation, genomic interaction, and genome function. Here, we formulate the TAD identification problem as an unsupervised machine learning (clustering) problem, and develop a new TAD identification method called ClusterTAD. We introduce a novel method to represent chromosomal contacts as features to be used by the clustering algorithm. Our results show that ClusterTAD can accurately predict the TADs on a simulated Hi-C data. Our method is also largely complementary and consistent with existing methods on the real Hi-C datasets of two mouse cells. The validation with the chromatin immunoprecipitation (ChIP) sequencing (ChIP-Seq) data shows that the domain boundaries identified by ClusterTAD have a high enrichment of CTCF binding sites, promoter-related marks, and enhancer-related histone modifications. As ClusterTAD is based on a proven clustering approach, it opens a new avenue to apply a large array of clustering methods developed in the machine learning field to the TAD identification problem. The source code, the results, and the TADs generated for the simulated and real Hi-C datasets are available here: https://github.com/BDM-Lab/ClusterTAD .

The Search for Bright Variable Stars in Open Cluster NGC 6819.

NASA Astrophysics Data System (ADS)

Talamantes, Antonio; Sandquist, E. L.

2009-01-01

During this research period data was taken for seven nights at the 1m telescope at Mt. Laguna Observatory for the open cluster NGC 6819. For four of the nights data was taken using a V-band filter. For the three nights remaining nights the data was taken using an R-band filter. Photometry was done using the ISIS image subtraction package. Six new variable stars were located using these techniques. These variable types include a pulsating variable, five detached eclipsing binaries. Of the detached eclipsing binaries, three are near the cluster turnoff and two in the blue straggler region(and one of these has total eclipses). Nine previously known variables(six contact binaries, two detached eclipsing binaries and one near-contact binary) were also studied.

Scalable Regression Tree Learning on Hadoop using OpenPlanet

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yin, Wei; Simmhan, Yogesh; Prasanna, Viktor

As scientific and engineering domains attempt to effectively analyze the deluge of data arriving from sensors and instruments, machine learning is becoming a key data mining tool to build prediction models. Regression tree is a popular learning model that combines decision trees and linear regression to forecast numerical target variables based on a set of input features. Map Reduce is well suited for addressing such data intensive learning applications, and a proprietary regression tree algorithm, PLANET, using MapReduce has been proposed earlier. In this paper, we describe an open source implement of this algorithm, OpenPlanet, on the Hadoop framework usingmore » a hybrid approach. Further, we evaluate the performance of OpenPlanet using realworld datasets from the Smart Power Grid domain to perform energy use forecasting, and propose tuning strategies of Hadoop parameters to improve the performance of the default configuration by 75% for a training dataset of 17 million tuples on a 64-core Hadoop cluster on FutureGrid.« less

Interstellar Extinction in 20 Open Star Clusters

NASA Astrophysics Data System (ADS)

Rangwal, Geeta; Yadav, R. K. S.; Durgapal, Alok K.; Bisht, D.

2017-12-01

The interstellar extinction law in 20 open star clusters namely, Berkeley 7, Collinder 69, Hogg 10, NGC 2362, Czernik 43, NGC 6530, NGC 6871, Bochum 10, Haffner 18, IC 4996, NGC 2384, NGC 6193, NGC 6618, NGC 7160, Collinder 232, Haffner 19, NGC 2401, NGC 6231, NGC 6823, and NGC 7380 have been studied in the optical and near-IR wavelength ranges. The difference between maximum and minimum values of E(B - V) indicates the presence of non-uniform extinction in all the clusters except Collinder 69, NGC 2362, and NGC 2384. The colour excess ratios are consistent with a normal extinction law for the clusters NGC 6823, Haffner 18, Haffner 19, NGC 7160, NGC 6193, NGC 2401, NGC 2384, NGC 6871, NGC 7380, Berkeley 7, Collinder 69, and IC 4996. We have found that the differential colour-excess ΔE(B - V), which may be due to the occurrence of dust and gas inside the clusters, decreases with the age of the clusters. A spatial variation of colour excess is found in NGC 6193 in the sense that it decreases from east to west in the cluster region. For the clusters Berkeley 7, NGC 7380, and NGC 6871, a dependence of colour excess E(B - V) with spectral class and luminosity is observed. Eight stars in Collinder 232, four stars in NGC 6530, and one star in NGC 6231 have excess flux in near-IR. This indicates that these stars may have circumstellar material around them.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hayes, Christian R.; Friel, Eileen D.; Slack, Taleah J.

We present new photometric and spectroscopic data of the old open cluster Czernik 30. Wide field BVI photometry allows us to correct for the high field contamination by statistical subtraction to produce a color–magnitude diagram (CMD) that clearly reveals the cluster sequence. From spectra of stars in the cluster field obtained with the Hydra spectrograph on the Wisconsin-Indiana-Yale-NOAO 3.5 m telescope we determine a mean cluster velocity of +79.9 ± 1.5 km s{sup −1} and provide membership information that helps further define the cluster giant branch and red clump. Stellar abundances for the brighter giants in the cluster indicate a mean metallicity ofmore » [Fe/H] = −0.2 ± 0.15. Fitting theoretical isochrones to the CMD we determine the following properties of Czernik 30: age = 2.8 ± 0.3 Gyr, (m − M){sub v} = 14.8 ± 0.1, E(B − V) = 0.24 ± 0.06, and E(V − I) = 0.36 ± 0.04. Czernik 30 is an old, sub-solar metallicity cluster located at a Galactocentric radius of R{sub gc}  ∼ 13.3 kpc. Given its age and position just beyond the transition to a flat abundance gradient seen in the open cluster population, Czernik 30 provides an interesting target for future observations.« less

Long-term occipital nerve stimulation for drug-resistant chronic cluster headache.

PubMed

Leone, Massimo; Proietti Cecchini, Alberto; Messina, Giuseppe; Franzini, Angelo

2017-07-01

Introduction Chronic cluster headache is rare and some of these patients become drug-resistant. Occipital nerve stimulation has been successfully employed in open studies to treat chronic drug-resistant cluster headache. Data from large group of occipital nerve stimulation-treated chronic cluster headache patients with long duration follow-up are advantageous. Patients and methods Efficacy of occipital nerve stimulation has been evaluated in an experimental monocentric open-label study including 35 chronic drug-resistant cluster headache patients (mean age 42 years; 30 men; mean illness duration: 6.7 years). The primary end-point was a reduction in number of daily attacks. Results After a median follow-up of 6.1 years (range 1.6-10.7), 20 (66.7%) patients were responders (≥50% reduction in headache number per day): 12 (40%) responders showed a stable condition characterized by sporadic attacks, five responders had a 60-80% reduction in headache number per day and in the remaining three responders chronic cluster headache was transformed in episodic cluster headache. Ten (33.3%) patients were non-responders; half of these have been responders for a long period (mean 14.6 months; range 2-48 months). Battery depletion (21 patients 70%) and electrode migration (six patients - 20%) were the most frequent adverse events. Conclusions Occipital nerve stimulation efficacy is confirmed in chronic drug-resistant cluster headaches even after an exceptional long-term follow-up. Tolerance can occur years after improvement.

A Gaia study of the Hyades open cluster

NASA Astrophysics Data System (ADS)

Reino, Stella; de Bruijne, Jos; Zari, Eleonora; d'Antona, Francesca; Ventura, Paolo

2018-03-01

We present a study of the membership of the Hyades open cluster, derive kinematically-modelled parallaxes of its members, and study the colour-absolute magnitude diagram of the cluster. We use Gaia DR1 Tycho-Gaia Astrometric Solution (TGAS) data complemented by Hipparcos-2 data for bright stars not contained in TGAS. We supplement the astrometric data with radial velocities collected from a dozen literature sources. By assuming that all cluster members move with the mean cluster velocity to within the velocity dispersion, we use the observed and the expected motions of the stars to determine individual cluster membership probabilities. We subsequently derive improved parallaxes through maximum-likelihood kinematic modelling of the cluster. This method has an iterative component to deal with 'outliers', caused for instance by double stars or escaping members. Our method extends an existing method and supports the mixed presence of stars with and without radial velocities. We find 251 candidate members, 200 of which have a literature radial velocity, and 70 of which are new candidate members with TGAS astrometry. The cluster is roughly spherical in its centre but significantly flattened at larger radii. The observed colour-absolute magnitude diagram shows a clear binary sequence. The kinematically-modelled parallaxes that we derive are a factor ˜1.7 / 2.9 more precise than the TGAS / Hipparcos-2 values and allow to derive an extremely sharp main sequence. This sequence shows evidence for fine-detailed structure which is elegantly explained by the full spectrum turbulence model of convection.

A distance of 133-137 parsecs to the Pleiades star cluster.

PubMed

Pan, Xiaopei; Shao, M; Kulkarni, S R

2004-01-22

Nearby 'open' clusters of stars (those that are not gravitationally bound) have played a crucial role in the development of stellar astronomy because, as a consequence of the stars having a common age, they provide excellent natural laboratories to test theoretical stellar models. Clusters also play a fundamental part in determining distance scales. The satellite Hipparcos surprisingly found that an extensively studied open cluster--the Pleiades (also known as the Seven Sisters)--had a distance of D = 118 +/- 4 pc (refs 2, 3), about ten per cent smaller than the accepted value. The discrepancy generated a spirited debate because the implication was that either current stellar models were incorrect by a surprising amount or Hipparcos was giving incorrect distances. Here we report the orbital parameters of the bright double star Atlas in the Pleiades, using long-baseline optical/infrared interferometry. From the data we derive a firm lower bound of D > 127 pc, with the most likely range being 133 < D < 137 pc. Our result reaffirms the fidelity of current stellar models.

Southern Clusters for Standardizing CCD Photometry

NASA Astrophysics Data System (ADS)

Moon, T. T.

2017-06-01

Standardizing photometric measurements typically involves undertaking all-sky photometry. This can be laborious and time-consuming and, for CCD photometry, particularly challenging. Transforming photometry to a standard system is, however, a crucial step when routinely measuring variable stars, as it allows photoelectric measurements from different observers to be combined. For observers in the northern hemisphere, standardized UBVRI values of stars in open clusters such as M67 and NGC 7790 have been established, greatly facilitating quick and accurate transformation of CCD measurements. Recently the AAVSO added the cluster NGC 3532 for southern hemisphere observers to similarly standardize their photometry. The availability of NGC 3532 standards was announced on the AAVSO Variable Star Observing, Photometry forum on 27 October 2016. Published photometry, along with some new measurements by the author, provide a means of checking these NGC 3532 standards which were determined through the AAVSO's Bright Star Monitor (BSM) program (see: https://www.aavso.org/aavsonet-epoch-photometry-database). New measurements of selected stars in the open clusters M25 and NGC 6067 are also included.

The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience.

PubMed

Burns, Randal; Roncal, William Gray; Kleissas, Dean; Lillaney, Kunal; Manavalan, Priya; Perlman, Eric; Berger, Daniel R; Bock, Davi D; Chung, Kwanghun; Grosenick, Logan; Kasthuri, Narayanan; Weiler, Nicholas C; Deisseroth, Karl; Kazhdan, Michael; Lichtman, Jeff; Reid, R Clay; Smith, Stephen J; Szalay, Alexander S; Vogelstein, Joshua T; Vogelstein, R Jacob

2013-01-01

We describe a scalable database cluster for the spatial analysis and annotation of high-throughput brain imaging data, initially for 3-d electron microscopy image stacks, but for time-series and multi-channel data as well. The system was designed primarily for workloads that build connectomes - neural connectivity maps of the brain-using the parallel execution of computer vision algorithms on high-performance compute clusters. These services and open-science data sets are publicly available at openconnecto.me. The system design inherits much from NoSQL scale-out and data-intensive computing architectures. We distribute data to cluster nodes by partitioning a spatial index. We direct I/O to different systems-reads to parallel disk arrays and writes to solid-state storage-to avoid I/O interference and maximize throughput. All programming interfaces are RESTful Web services, which are simple and stateless, improving scalability and usability. We include a performance evaluation of the production system, highlighting the effec-tiveness of spatial data organization.

The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience

PubMed Central

Burns, Randal; Roncal, William Gray; Kleissas, Dean; Lillaney, Kunal; Manavalan, Priya; Perlman, Eric; Berger, Daniel R.; Bock, Davi D.; Chung, Kwanghun; Grosenick, Logan; Kasthuri, Narayanan; Weiler, Nicholas C.; Deisseroth, Karl; Kazhdan, Michael; Lichtman, Jeff; Reid, R. Clay; Smith, Stephen J.; Szalay, Alexander S.; Vogelstein, Joshua T.; Vogelstein, R. Jacob

2013-01-01

We describe a scalable database cluster for the spatial analysis and annotation of high-throughput brain imaging data, initially for 3-d electron microscopy image stacks, but for time-series and multi-channel data as well. The system was designed primarily for workloads that build connectomes— neural connectivity maps of the brain—using the parallel execution of computer vision algorithms on high-performance compute clusters. These services and open-science data sets are publicly available at openconnecto.me. The system design inherits much from NoSQL scale-out and data-intensive computing architectures. We distribute data to cluster nodes by partitioning a spatial index. We direct I/O to different systems—reads to parallel disk arrays and writes to solid-state storage—to avoid I/O interference and maximize throughput. All programming interfaces are RESTful Web services, which are simple and stateless, improving scalability and usability. We include a performance evaluation of the production system, highlighting the effec-tiveness of spatial data organization. PMID:24401992

Optical–Mid-infrared Period–Luminosity Relations for W UMa-type Contact Binaries Based on Gaia DR 1: 8% Distance Accuracy

NASA Astrophysics Data System (ADS)

Chen, Xiaodian; Deng, Licai; de Grijs, Richard; Wang, Shu; Feng, Yuting

2018-06-01

W Ursa Majoris (W UMa)-type contact binary systems (CBs) are useful statistical distance indicators because of their large numbers. Here, we establish (orbital) period–luminosity relations (PLRs) in 12 optical to mid-infrared bands (GBVRIJHK s W1W2W3W4) based on 183 nearby W UMa-type CBs with accurate Tycho–Gaia parallaxes. The 1σ dispersion of the PLRs decreases from optical to near- and mid-infrared wavelengths. The minimum scatter, 0.16 mag, implies that W UMa-type CBs can be used to recover distances to 7% precision. Applying our newly determined PLRs to 19 open clusters containing W UMa-type CBs demonstrates that the PLR and open cluster CB distance scales are mutually consistent to within 1%. Adopting our PLRs as secondary distance indicators, we compiled a catalog of 55,603 CB candidates, of which 80% have distance estimates based on a combination of optical, near-infrared, and mid-infrared photometry. Using Fourier decomposition, 27,318 high-probability W UMa-type CBs were selected. The resulting 8% distance accuracy implies that our sample encompasses the largest number of objects with accurate distances within a local volume with a radius of 3 kpc available to date. The distribution of W UMa-type CBs in the Galaxy suggests that in different environments, the CB luminosity function may be different: larger numbers of brighter (longer-period) W UMa-type CBs are found in younger environments.

Crowdsourcing for Challenging Technical Problems - It Works!

NASA Technical Reports Server (NTRS)

Davis, Jeffrey R.

2011-01-01

The NASA Johnson Space Center Space Life Sciences Directorate (SLSD) and Wyle Integrated Science and Engineering (Wyle) will conduct a one-day business cluster at the 62nd IAC so that IAC attendees will understand the benefits of open innovation (crowdsourcing), review successful results of conducting technical challenges in various open innovation projects, and learn how an organization can effectively deploy these new problem solving tools to innovate more efficiently and effectively. Results from both the SLSD open innovation pilot program and the open innovation workshop conducted by the NASA Human Health and Performance Center will be discussed. NHHPC members will be recruited to participate in the business cluster (see membership http://nhhpc.nasa.gov) and as IAF members. Crowdsourcing may be defined as the act of outsourcing tasks that are traditionally performed by an employee or contractor to an undefined, generally large group of people or community (a crowd) in the form of an open call. The open call may be issued by the organization wishing to find a solution to a particular problem or complete a task, or by an open innovation service provider on behalf of that organization. In 2008, the SLSD, with the support of Wyle, established and implemented pilot projects in open innovation (crowdsourcing) to determine if these new internet-based platforms could indeed find solutions to difficult technical challenges. These unsolved technical problems were converted to problem statements, called Challenges by some open innovation service providers, and were then posted externally to seek solutions to these problems. In addition, an open call was issued internally to NASA employees Agency wide (11 Field Centers and NASA HQ) using an open innovation service provider crowdsourcing platform to post NASA challenges from each Center for the others to propose solutions). From 2008 to 2010, the SLSD issued 34 challenges, 14 externally and 20 internally. The 14 external problems or challenges were posted through three different vendors: InnoCentive, yet2.com and TopCoder. The 20 internal challenges were conducted using the InnoCentive crowdsourcing platform designed for use internal to an organization and customized for NASA use, and promoted as NASA@Work. The results were significant. Of the seven InnoCentive external challenges, two full and five partial awards were made in complex technical areas such as predicting solar flares and long-duration food packaging.

Association of Interleukin-1 gene clusters polymorphisms with primary open-angle glaucoma: a meta-analysis.

PubMed

Li, Junhua; Feng, Yifan; Sung, Mi Sun; Lee, Tae Hee; Park, Sang Woo

2017-11-28

Previous studies have associated the Interleukin-1 (IL-1) gene clusters polymorphisms with the risk of primary open-angle glaucoma (POAG). However, the results were not consistent. Here, we performed a meta-analysis to evaluate the role of IL-1 gene clusters polymorphisms in POAG susceptibility. PubMed, EMBASE and Cochrane Library (up to July 15, 2017) were searched by two independent investigators. All case-control studies investigating the association between single-nucleotide polymorphisms (SNPs) of IL-1 gene clusters and POAG risk were included. Odds ratios (ORs) with 95% confidence intervals (CIs) were calculated for quantifying the strength of association that has been involved in at least two studies. Five studies on IL-1β rs16944 (c. -511C > T) (1053 cases and 986 controls), 4 studies on IL-1α rs1800587 (c. -889C > T) (822 cases and 714 controls), and 4 studies on IL-1β rs1143634 (c. +3953C > T) (798 cases and 730 controls) were included. The results suggest that all three SNPs were not associated with POAG risk. Stratification analyses indicated that the rs1143634 has a suggestive associated with high tension glaucoma (HTG) under dominant (P = 0.03), heterozygote (P = 0.04) and allelic models (P = 0.02), however, the weak association was nullified after Bonferroni adjustments for multiple tests. Based on current meta-analysis, we indicated that there is lack of association between the three SNPs of IL-1 and POAG. However, this conclusion should be interpreted with caution and further well designed studies with large sample-size are required to validate the conclusion as low statistical powers.

Polarimetry of the Highly Reddened Open Clusters HOGG 15 and Lyngå 14

NASA Astrophysics Data System (ADS)

Orsatti, A. M.; Vega, E.; Marraco, H. G.

1998-07-01

We present UBVRI polarimetric observations of stars belonging to the highly reddened open clusters Hogg 15 and Lyngå 14. The wavelength of maximum polarization is computed and then analyzed in the context of its relation to the optical properties and characteristic particle size distribution of the grains responsible for the polarization in each case. The amount and direction of the linear polarization are also computed. Results indicate that the polarization efficiency is relatively low in both cases, compared with the values attributed to the interstellar medium, and probably due to depolarization effects. Only one out of the 12 observed members in Hogg 15, and none in Lyngå 14, presents indications of intrinsic polarization in its measures. There exists some ``intracluster'' dust in association with Hogg 15, with a slightly different grain size distribution when compared with the Coalsack dust itself. For Lyngå 14, we conclude that the polarization detected in this case possibly comes from dust present in a nearby cloud located along the line of sight to the cluster, with some dust related to the cluster itself. The magnetic field in the direction to Hogg 15 follows the general trend of the polarization directions in the region, but this is not true for Lyngå 14, where differences seem to exist. Based on observations at the Complejo Astronómico El Leoncito, operated under agreement among the Consejo Nacional de Investigaciones Científicas y Técnicas de la República Argentina, Secretaría de Ciencia y Tecnología de la Nación, and the National Universities of La Plata, Córdoba, and San Juan.

Rotation Period of Blanco 1 Members from KELT Light Curves: Comparing Rotation-Ages to Various Stellar Chronometers at 100 Myr

NASA Astrophysics Data System (ADS)

Cargile, Phillip; James, D. J.; Pepper, J.; Kuhn, R.; Siverd, R. J.; Stassun, K. G.

2012-01-01

The age of a star is one of its most fundamental properties, and yet tragically it is also the one property that is not directly measurable in observations. We must therefore rely on age estimates based on mostly model-dependent or empirical methods. Moreover, there remains a critical need for direct comparison of different age-dating techniques using the same stars analyzed in a consistent fashion. One chronometer commonly being employed is using stellar rotation rates to measure stellar ages, i.e., gyrochronology. Although this technique is one of the better-understood chronometers, its calibration relies heavily on the solar datum, as well as benchmark open clusters with reliable ages, and also lacks a comprehensive comparative analysis to other stellar chronometers. The age of the nearby (? pc) open cluster Blanco 1 has been estimated using various techniques, including being one of only 7 clusters with an LDB age measurement, making it a unique and powerful comparative laboratory for stellar chronometry, including gyrochronology. Here, we present preliminary results from our light-curve analysis of solar-type stars in Blanco 1 in order to identify and measure rotation periods of cluster members. The light-curve data were obtained during the engineering and calibration phase of the KELT-South survey. The large area on the sky and low number of contaminating field stars makes Blanco 1 an ideal target for the extremely wide field and large pixel scale of the KELT telescope. We apply a period-finding technique using the Lomb-Scargle periodogram and FAP statistics to measure significant rotation periods in the KELT-South light curves for confirmed Blanco 1 members. These new rotation periods allow us to test and inform rotation evolution models for stellar ages at ? Myr, determining a rotation-age for Blanco 1 using gyrochronology, and compare this rotation-age to other age measurements for this cluster.

Fungal secondary metabolites - strategies to activate silent gene clusters.

PubMed

Brakhage, Axel A; Schroeckh, Volker

2011-01-01

Filamentous fungi produce a multitude of low molecular weight bioactive compounds. The increasing number of fungal genome sequences impressively demonstrated that their biosynthetic potential is far from being exploited. In fungi, the genes required for the biosynthesis of a secondary metabolite are clustered. Many of these bioinformatically newly discovered secondary metabolism gene clusters are silent under standard laboratory conditions. Consequently, no product can be found. This review summarizes the current strategies that have been successfully applied during the last years to activate these silent gene clusters in filamentous fungi, especially in the genus Aspergillus. The techniques take advantage of genome mining, vary from the simple search for compounds with bioinformatically predicted physicochemical properties up to methods that exploit a probable interaction of microorganisms. Until now, the majority of successful approaches have been based on molecular biology like the generation of gene "knock outs", promoter exchange, overexpression of transcription factors or other pleiotropic regulators. Moreover, strategies based on epigenetics opened a new avenue for the elucidation of the regulation of secondary metabolite formation and will certainly continue to play a significant role for the elucidation of cryptic natural products. The conditions under which a given gene cluster is naturally expressed are largely unknown. One technique is to attempt to simulate the natural habitat by co-cultivation of microorganisms from the same ecosystem. This has already led to the activation of silent gene clusters and the identification of novel compounds in Aspergillus nidulans. These simulation strategies will help discover new natural products in the future, and may also provide fundamental new insights into microbial communication. Copyright © 2010 Elsevier Inc. All rights reserved.

The end of the White Dwarf Cooling Sequence of NGC 6752

NASA Astrophysics Data System (ADS)

Bedin, Luigi

2017-08-01

We propose to study the last HST-accessible white dwarf (WD) cooling sequence (CS) for a nearby globular cluster (GC), the chemically complex, extreme blue horizontal branch cluster NGC 6752. Over 97% of stars end their lives as WDs, and the WD CS provides constraints not only on the age, but also potentially the star formation history of a GC. The CS of WDs also lies in the least-explored region of the color-magnitude diagram of old stellar populations. Recent deep imaging with HST has successfully reached the end of the WD CS in only three classical old GCs, M4, NGC 6397 and 47 Tuc, and reveals an unexpectedly complex, and double-peaked, WD CS in the metal rich old open cluster NGC 6791. One more investigation is in progress on the massive globular Omega Centauri, where over 14 sub-populations are known to exist.While almost every cluster is known to host multiple populations, every single cluster is unique. NGC 6752 is a bridge between the relatively simple globular clusters, and Omega Cen, the most complex globular cluster known. NGC 6752 has an extended blue horizontal branch, a collapsed core and 3 chemically distinct populations. It is our last chance to add diversity to our very limited sample of WD CS, so far containing only 3 globular clusters, one old open cluster, and the complex Omega Cen system. We need to undertake this investigation while HST is still operational, as there is no foreseeable opportunity in the post-HST era to have one extra WD CS in the homogeneus optical photometric system of HST.

Equalizer: a scalable parallel rendering framework.

PubMed

Eilemann, Stefan; Makhinya, Maxim; Pajarola, Renato

2009-01-01

Continuing improvements in CPU and GPU performances as well as increasing multi-core processor and cluster-based parallelism demand for flexible and scalable parallel rendering solutions that can exploit multipipe hardware accelerated graphics. In fact, to achieve interactive visualization, scalable rendering systems are essential to cope with the rapid growth of data sets. However, parallel rendering systems are non-trivial to develop and often only application specific implementations have been proposed. The task of developing a scalable parallel rendering framework is even more difficult if it should be generic to support various types of data and visualization applications, and at the same time work efficiently on a cluster with distributed graphics cards. In this paper we introduce a novel system called Equalizer, a toolkit for scalable parallel rendering based on OpenGL which provides an application programming interface (API) to develop scalable graphics applications for a wide range of systems ranging from large distributed visualization clusters and multi-processor multipipe graphics systems to single-processor single-pipe desktop machines. We describe the system architecture, the basic API, discuss its advantages over previous approaches, present example configurations and usage scenarios as well as scalability results.

Deep and wide photometry of the two open clusters NGC 1245 and NGC 2506: CCD observation and physical properties

NASA Astrophysics Data System (ADS)

Lee, S. H.; Kang, Y.-W.; Ann, H. B.

2012-09-01

We have conducted VI CCD photometry of the two open clusters NGC 1245 and NGC 2506 using the CFH12K CCD camera. Our photometry covers a sky area of 84 × 82 and 42 × 81 arcmin2 for the two clusters, respectively, and reaches down to V ≈ 23. We derived the physical parameters using detailed theoretical isochrone fittings using χ2 minimization. The derived cluster parameters are E(B - V) = 0.24 ± 0.05 and 0.03 ± 0.04, (V - MV)0 = 12.25 ± 0.12 and 12.47 ± 0.08, age (Gyr) = 1.08 ± 0.09 and 2.31 ± 0.16, and [Fe/H] = -0.08 ± 0.06 and -0.24 ± 0.06, respectively, for NGC 1245 and NGC 2506. We present the luminosity functions of the two clusters, which reach down to MV ≈ 10, and derive mass functions with slopes of Γ = -1.29 for NGC 1245 and Γ = -1.26 for NGC 2506. The slopes are slightly shallower than that of the solar neighbourhood, implying the existence of dynamical evolution that drives the evaporation of the low-mass stars in the clusters.

Two Massive White Dwarfs from NGC 2323 and the Initial-Final Mass Relation for Progenitors of 4 to 6.5 M

NASA Astrophysics Data System (ADS)

Cummings, Jeffrey D.; Kalirai, Jason S.; Tremblay, P.-E.; Ramirez-Ruiz, Enrico

2016-02-01

We observed a sample of 10 white dwarf candidates in the rich open cluster NGC 2323 (M50) with the Keck Low-Resolution Imaging Spectrometer. The spectroscopy shows eight to be DA white dwarfs, with six of these having high signal-to-noise ratio appropriate for our analysis. Two of these white dwarfs are consistent with singly evolved cluster membership, and both are high mass ˜1.07 M⊙, and give equivalent progenitor masses of 4.69 M⊙. To supplement these new high-mass white dwarfs and analyze the initial-final mass relation (IFMR), we also looked at 30 white dwarfs from publicly available data that are mostly all high-mass (≳ 0.9 M⊙). These original published data exhibited significant scatter, and to test if this scatter is true or simply the result of systematics, we have uniformly analyzed the white dwarf spectra and have adopted thorough photometric techniques to derive uniform cluster parameters for their parent clusters. The resulting IFMR scatter is significantly reduced, arguing that mass-loss rates are not stochastic in nature and that within the ranges of metallicity and mass analyzed in this work mass loss is not highly sensitive to variations in metallicity. Lastly, when adopting cluster ages based on Y2 isochrones, the slope of the high-mass IFMR remains steep and consistent with that found from intermediate-mass white dwarfs, giving a linear IFMR from progenitor masses between 3 and 6.5 M⊙. In contrast, when adopting the slightly younger cluster ages based on PARSEC isochrones, the high-mass IFMR has a moderate turnover near an initial mass of 4 M⊙. Based on observations with the W.M. Keck Observatory, which is operated as a scientific partnership among the California Institute of Technology, the University of California, and NASA, was made possible by the generous financial support of the W.M. Keck Foundation.

A High-precision Trigonometric Parallax to an Ancient Metal-poor Globular Cluster

NASA Astrophysics Data System (ADS)

Brown, T. M.; Casertano, S.; Strader, J.; Riess, A.; VandenBerg, D. A.; Soderblom, D. R.; Kalirai, J.; Salinas, R.

2018-03-01

Using the Wide Field Camera 3 (WFC3) on the Hubble Space Telescope (HST), we have obtained a direct trigonometric parallax for the nearest metal-poor globular cluster, NGC 6397. Although trigonometric parallaxes have been previously measured for many nearby open clusters, this is the first parallax for an ancient metal-poor population—one that is used as a fundamental template in many stellar population studies. This high-precision measurement was enabled by the HST/WFC3 spatial-scanning mode, providing hundreds of astrometric measurements for dozens of stars in the cluster and also for Galactic field stars along the same sightline. We find a parallax of 0.418 ± 0.013 ± 0.018 mas (statistical, systematic), corresponding to a true distance modulus of 11.89 ± 0.07 ± 0.09 mag (2.39 ± 0.07 ± 0.10 kpc). The V luminosity at the stellar main-sequence turnoff implies an absolute cluster age of 13.4 ± 0.7 ± 1.2 Gyr. Based on observations made with the NASA/ESA Hubble Space Telescope, obtained at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-26555. These observations are associated with programs GO-13817, GO-14336, and GO-14773.

Mimicking the magnetic properties of rare earth elements using superatoms.

PubMed

Cheng, Shi-Bo; Berkdemir, Cuneyt; Castleman, A W

2015-04-21

Rare earth elements (REs) consist of a very important group in the periodic table that is vital to many modern technologies. The mining process, however, is extremely damaging to the environment, making them low yield and very expensive. Therefore, mimicking the properties of REs in a superatom framework is especially valuable but at the same time, technically challenging and requiring advanced concepts about manipulating properties of atom/molecular complexes. Herein, by using photoelectron imaging spectroscopy, we provide original idea and direct experimental evidence that chosen boron-doped clusters could mimic the magnetic characteristics of REs. Specifically, the neutral LaB and NdB clusters are found to have similar unpaired electrons and magnetic moments as their isovalent REs (namely Nd and Eu, respectively), opening up the great possibility in accomplishing rare earth mimicry. Extension of the superatom concept into the rare earth group not only further shows the power and advance of this concept but also, will stimulate more efforts to explore new superatomic clusters to mimic the chemistry of these heavy atoms, which will be of great importance in designing novel building blocks in the application of cluster-assembled nanomaterials. Additionally, based on these experimental findings, a novel "magic boron" counting rule is proposed to estimate the numbers of unpaired electrons in diatomic LnB clusters.

Turbulent heating in galaxy clusters brightest in X-rays.

PubMed

Zhuravleva, I; Churazov, E; Schekochihin, A A; Allen, S W; Arévalo, P; Fabian, A C; Forman, W R; Sanders, J S; Simionescu, A; Sunyaev, R; Vikhlinin, A; Werner, N

2014-11-06

The hot (10(7) to 10(8) kelvin), X-ray-emitting intracluster medium (ICM) is the dominant baryonic constituent of clusters of galaxies. In the cores of many clusters, radiative energy losses from the ICM occur on timescales much shorter than the age of the system. Unchecked, this cooling would lead to massive accumulations of cold gas and vigorous star formation, in contradiction to observations. Various sources of energy capable of compensating for these cooling losses have been proposed, the most promising being heating by the supermassive black holes in the central galaxies, through inflation of bubbles of relativistic plasma. Regardless of the original source of energy, the question of how this energy is transferred to the ICM remains open. Here we present a plausible solution to this question based on deep X-ray data and a new data analysis method that enable us to evaluate directly the ICM heating rate from the dissipation of turbulence. We find that turbulent heating is sufficient to offset radiative cooling and indeed appears to balance it locally at each radius-it may therefore be the key element in resolving the gas cooling problem in cluster cores and, more universally, in the atmospheres of X-ray-emitting, gas-rich systems on scales from galaxy clusters to groups and elliptical galaxies.

Spectroscopic Analyses of Neutron Capture Elements in Open Clusters

NASA Astrophysics Data System (ADS)

O'Connell, Julia E.

The evolution of elements as a function or age throughout the Milky Way disk provides strong constraints for galaxy evolution models, and on star formation epochs. In an effort to provide such constraints, we conducted an investigation into r- and s-process elemental abundances for a large sample of open clusters as part of an optical follow-up to the SDSS-III/APOGEE-1 near infrared survey. To obtain data for neutron capture abundance analysis, we conducted a long-term observing campaign spanning three years (2013-2016) using the McDonald Observatory Otto Struve 2.1-meter telescope and Sandiford Cass Echelle Spectrograph (SES, R(lambda/Deltalambda) ˜60,000). The SES provides a wavelength range of ˜1400 A, making it uniquely suited to investigate a number of other important chemical abundances as well as the neutron capture elements. For this study, we derive abundances for 18 elements covering four nucleosynthetic families- light, iron-peak, neutron capture and alpha-elements- for ˜30 open clusters within 6 kpc of the Sun with ages ranging from ˜80 Myr to ˜10 Gyr. Both equivalent width (EW) measurements and spectral synthesis methods were employed to derive abundances for all elements. Initial estimates for model stellar atmospheres- effective temperature and surface gravity- were provided by the APOGEE data set, and then re-derived for our optical spectra by removing abundance trends as a function of excitation potential and reduced width log(EW/lambda). With the exception of Ba II and Zr I, abundance analyses for all neutron capture elements were performed by generating synthetic spectra from the new stellar parameters. In order to remove molecular contamination, or blending from nearby atomic features, the synthetic spectra were modeled by a best-fit Gaussian to the observed data. Nd II shows a slight enhancement in all cluster stars, while other neutron capture elements follow solar abundance trends. Ba II shows a large cluster-to-cluster abundance spread, consistent with other open cluster abundance studies. From log(Age) ˜8.5, this large spread as a function of age appears to replicate the findings from an earlier, much debated study by Orazi et al. (2009) which found a linear trend of decreasing barium abundance with increasing age.

Formation of vacancy clusters and cavities in He-implanted silicon studied by slow-positron annihilation spectroscopy

NASA Astrophysics Data System (ADS)

Brusa, Roberto S.; Karwasz, Grzegorz P.; Tiengo, Nadia; Zecca, Antonio; Corni, Federico; Tonini, Rita; Ottaviani, Gianpiero

2000-04-01

The depth profile of open volume defects has been measured in Si implanted with He at an energy of 20 keV, by means of a slow-positron beam and the Doppler broadening technique. The evolution of defect distributions has been studied as a function of isochronal annealing in two series of samples implanted at the fluence of 5×1015 and 2×1016 He cm-2. A fitting procedure has been applied to the experimental data to extract a positron parameter characterizing each open volume defect. The defects have been identified by comparing this parameter with recent theoretical calculations. In as-implanted samples the major part of vacancies and divacancies produced by implantation is passivated by the presence of He. The mean depth of defects as seen by the positron annihilation technique is about five times less than the helium projected range. During the successive isochronal annealing the number of positron traps decreases, then increases and finally, at the highest annealing temperatures, disappears only in the samples implanted at the lowest fluence. A minimum of open volume defects is reached at the annealing temperature of 250 °C in both series. The increase of open volume defects at temperatures higher than 250 °C is due to the appearance of vacancy clusters of increasing size, with a mean depth distribution that moves towards the He projected range. The appearance of vacancy clusters is strictly related to the out diffusion of He. In the samples implanted at 5×1015 cm-2 the vacancy clusters are mainly four vacancy agglomerates stabilized by He related defects. They disappear starting from an annealing temperature of 700 °C. In the samples implanted at 2×1016 cm-2 and annealed at 850-900 °C the vacancy clusters disappear and only a distribution of cavities centered around the He projected range remains. The role of vacancies in the formation of He clusters, which evolve in bubble and then in cavities, is discussed.

Formation of metallic magnetic clusters in a Kondo-lattice metal: Evidence from an optical study

PubMed Central

Kovaleva, N. N.; Kugel, K. I.; Bazhenov, A. V.; Fursova, T. N.; Löser, W.; Xu, Y.; Behr, G.; Kusmartsev, F. V.

2012-01-01

Magnetic materials are usually divided into two classes: those with localised magnetic moments, and those with itinerant charge carriers. We present a comprehensive experimental (spectroscopic ellipsomerty) and theoretical study to demonstrate that these two types of magnetism do not only coexist but complement each other in the Kondo-lattice metal, Tb2PdSi3. In this material the itinerant charge carriers interact with large localised magnetic moments of Tb(4f) states, forming complex magnetic lattices at low temperatures, which we associate with self-organisation of magnetic clusters. The formation of magnetic clusters results in low-energy optical spectral weight shifts, which correspond to opening of the pseudogap in the conduction band of the itinerant charge carriers and development of the low- and high-spin intersite electronic transitions. This phenomenon, driven by self-trapping of electrons by magnetic fluctuations, could be common in correlated metals, including besides Kondo-lattice metals, Fe-based and cuprate superconductors. PMID:23189239

A uniform approach for programming distributed heterogeneous computing systems

PubMed Central

Grasso, Ivan; Pellegrini, Simone; Cosenza, Biagio; Fahringer, Thomas

2014-01-01

Large-scale compute clusters of heterogeneous nodes equipped with multi-core CPUs and GPUs are getting increasingly popular in the scientific community. However, such systems require a combination of different programming paradigms making application development very challenging. In this article we introduce libWater, a library-based extension of the OpenCL programming model that simplifies the development of heterogeneous distributed applications. libWater consists of a simple interface, which is a transparent abstraction of the underlying distributed architecture, offering advanced features such as inter-context and inter-node device synchronization. It provides a runtime system which tracks dependency information enforced by event synchronization to dynamically build a DAG of commands, on which we automatically apply two optimizations: collective communication pattern detection and device-host-device copy removal. We assess libWater’s performance in three compute clusters available from the Vienna Scientific Cluster, the Barcelona Supercomputing Center and the University of Innsbruck, demonstrating improved performance and scaling with different test applications and configurations. PMID:25844015

A uniform approach for programming distributed heterogeneous computing systems.

PubMed

Grasso, Ivan; Pellegrini, Simone; Cosenza, Biagio; Fahringer, Thomas

2014-12-01

Large-scale compute clusters of heterogeneous nodes equipped with multi-core CPUs and GPUs are getting increasingly popular in the scientific community. However, such systems require a combination of different programming paradigms making application development very challenging. In this article we introduce libWater, a library-based extension of the OpenCL programming model that simplifies the development of heterogeneous distributed applications. libWater consists of a simple interface, which is a transparent abstraction of the underlying distributed architecture, offering advanced features such as inter-context and inter-node device synchronization. It provides a runtime system which tracks dependency information enforced by event synchronization to dynamically build a DAG of commands, on which we automatically apply two optimizations: collective communication pattern detection and device-host-device copy removal. We assess libWater's performance in three compute clusters available from the Vienna Scientific Cluster, the Barcelona Supercomputing Center and the University of Innsbruck, demonstrating improved performance and scaling with different test applications and configurations.

Synthesis and characterization of Mn quantum dots by bioreduction with water hyacinth.

PubMed

Rosano-Ortega, G; Schabes-Retchkiman, P; Zorrilla, C; Liu, H B; Canizal, G; Avila-Pérez, P; Ascencio, J A

2006-01-01

The bio-reduction method is reported as a part of a complimentary self-sustained technology, where bioremediation and metal particle production are related. The use of the characterization methods in this self sustainable technique open the expectative to be used for several other elements and with other plants, which will be discussed. However, the particular case of Mn nanoparticles involves an important option to generate nanoparticles in the range of 1-4 nanometers with a well controlled size and with a structure based on an fcc-like geometry for the smallest clusters and with more complex arrays for cluster greater than four shells, which involves magnetic moments significantly related to their atomistic configuration. At the same time, the use of the characterization methods establishes the dependence of the nanoparticle's size on the pH conditions used during the synthesis; small clusters in the range of 1-2 nm were generated using pH=5, and it was shown that for the smallest aggregates, simple polyhedron shapes are stable.

Identifying and reducing error in cluster-expansion approximations of protein energies.

PubMed

Hahn, Seungsoo; Ashenberg, Orr; Grigoryan, Gevorg; Keating, Amy E

2010-12-01

Protein design involves searching a vast space for sequences that are compatible with a defined structure. This can pose significant computational challenges. Cluster expansion is a technique that can accelerate the evaluation of protein energies by generating a simple functional relationship between sequence and energy. The method consists of several steps. First, for a given protein structure, a training set of sequences with known energies is generated. Next, this training set is used to expand energy as a function of clusters consisting of single residues, residue pairs, and higher order terms, if required. The accuracy of the sequence-based expansion is monitored and improved using cross-validation testing and iterative inclusion of additional clusters. As a trade-off for evaluation speed, the cluster-expansion approximation causes prediction errors, which can be reduced by including more training sequences, including higher order terms in the expansion, and/or reducing the sequence space described by the cluster expansion. This article analyzes the sources of error and introduces a method whereby accuracy can be improved by judiciously reducing the described sequence space. The method is applied to describe the sequence-stability relationship for several protein structures: coiled-coil dimers and trimers, a PDZ domain, and T4 lysozyme as examples with computationally derived energies, and SH3 domains in amphiphysin-1 and endophilin-1 as examples where the expanded pseudo-energies are obtained from experiments. Our open-source software package Cluster Expansion Version 1.0 allows users to expand their own energy function of interest and thereby apply cluster expansion to custom problems in protein design. © 2010 Wiley Periodicals, Inc.

Notes from Workshop Center for Open Education. Fall 1977.

ERIC Educational Resources Information Center

City Univ. of New York, NY. City Coll. Workshop Center for Open Education.

This publication provides a periodic report on the changes begun in the New York City public schools under the direction of the City College Advisory Service to Open Corridors. The Open Corridor concept involves a cluster of classrooms around a single corridor which is used as an activity center. Children from the various classrooms may go to the…

Findings from a Multiyear Scale-Up Effectiveness Trial of Open Court Reading

ERIC Educational Resources Information Center

Vaden-Kiernan, Michael; Borman, Geoffrey; Caverly, Sarah; Bell, Nance; Sullivan, Kate; Ruiz de Castilla, Veronica; Fleming, Grace; Rodriguez, Debra; Henry, Chad; Long, Tracy; Hughes Jones, Debra

2018-01-01

This multiyear scale-up effectiveness study of Open Court Reading (OCR) involved approximately 4,500 students and more than 1,000 teachers per year in Grades K-5 from 49 elementary schools in seven districts across the country. Using a school-level cluster randomized trial design, we assessed the implementation and effectiveness of Open Court…

Infrared absorption of methanol clusters (CH3OH)n with n = 2-6 recorded with a time-of-flight mass spectrometer using infrared depletion and vacuum-ultraviolet ionization.

PubMed

Han, Hui-Ling; Camacho, Cristopher; Witek, Henryk A; Lee, Yuan-Pern

2011-04-14

We investigated IR spectra in the CH- and OH-stretching regions of size-selected methanol clusters, (CH(3)OH)(n) with n = 2-6, in a pulsed supersonic jet by using the IR-VUV (vacuum-ultraviolet) ionization technique. VUV emission at 118 nm served as the source of ionization in a time-of-flight mass spectrometer. The tunable IR laser emission served as a source of predissociation or excitation before ionization. The variations of intensity of protonated methanol cluster ions (CH(3)OH)(n)H(+) and CH(3)OH(+) and (CH(3)OH)(2)(+) were monitored as the IR laser light was tuned across the range 2650-3750 cm(-1). Careful processing of these action spectra based on photoionization efficiencies and the production and loss of each cluster due to photodissociation yielded IR spectra of the size-selected clusters. Spectra of methanol clusters in the OH region have been extensively investigated; our results are consistent with previous reports, except that the band near 3675 cm(-1) is identified as being associated with the proton acceptor of (CH(3)OH)(2). Spectra in the CH region are new. In the region 2800-3050 cm(-1), bands near 2845, 2956, and 3007 cm(-1) for CH(3)OH split into 2823, 2849, 2934, 2955, 2984, and 3006 cm(-1) for (CH(3)OH)(2) that correspond to proton donor and proton acceptor, indicating that the methanol dimer has a preferred open-chain structure. In contrast, for (CH(3)OH)(3), the splitting diminishes and the bands near 2837, 2954, and 2987 cm(-1) become narrower, indicating a preferred cyclic structure. Anharmonic vibrational wavenumbers predicted for the methanol open-chain dimer and the cyclic trimer with the B3LYP∕VPT2∕ANO1 level of theory are consistent with experimental results. For the tetramer and pentamer, the spectral pattern similar to that of the trimer but with greater widths was observed, indicating that the most stable structures are also cyclic.

Weather during bloom affects pollination and yield of highbush blueberry.

PubMed

Tuell, Julianna K; Isaacs, Rufus

2010-06-01

Weather plays an important role in spring-blooming fruit crops due to the combined effects on bee activity, flower opening, pollen germination, and fertilization. To determine the effects of weather on highbush blueberry, Vaccinium corymbosum L., productivity, we monitored bee activity and compared fruit set, weight, and seed number in a field stocked with honey bees, Apis mellifera L., and common eastern bumble bees, Bombus impatiens (Cresson). Flowers were subjected to one of five treatments during bloom: enclosed, open, open during poor weather only, open during good weather only, or open during poor and good weather. Fewer bees of all types were observed foraging and fewer pollen foragers returned to colonies during poor weather than during good weather. There were also changes in foraging community composition: honey bees dominated during good weather, whereas bumble bees dominated during poor weather. Berries from flowers exposed only during poor weather had higher fruit set in 1 yr and higher berry weight in the other year compared with enclosed clusters. In both years, clusters exposed only during good weather had > 5 times as many mature seeds, weighed twice as much, and had double the fruit set of those not exposed. No significant increase over flowers exposed during good weather was observed when clusters were exposed during good and poor weather. Our results are discussed in terms of the role of weather during bloom on the contribution of bees adapted to foraging during cool conditions.

Magnetic Force Switches for Magnetic Fluid Micromixing

NASA Astrophysics Data System (ADS)

Wei, Zung-Hang; Lee, Chiun-Peng; Lai, Mei-Feng

2010-01-01

A magnetic fluid micromixer with energy-saving magnetic force switches that can manipulate the magnetic fluid flow is proposed. The micromixer of high mixing efficiency uses single-domain micro magnets that have strong magnetic anisotropy to produce the magnetic force for the mixing. By altering the magnetization directions of the magnets that have different aspect ratios and coercivities, open and closed magnetic fluxes can be produced around each magnet cluster. For open magnetic flux, the mixing efficiency is numerically found to increase with the saturation magnetization of the magnets. On the contrary, the magnet clusters barely affects the mixing efficiency in the case of closed magnetic flux. Due to the different magnetic forces produced in open and closed magnetic fluxes, the magnetic fluid mixing can be switched on and off.

On the physical nature of six galactic open cluster candidates

NASA Astrophysics Data System (ADS)

Piatti, A. E.; Clariá, J. J.; Ahumada, A. V.

We present CCD UBVI_(KC) photometry in the fields of the unstudied open cluster (OC) candidates Haffner 3, Haffner 5, NGC 2368, Haffner 25, Hogg 3 and Hogg 4. Our analysis shows that none of these objects are genuine OCs since no clear main sequences or other typical features can be seen in their colour-magnitude and colour-colour diagrams. Star counts performed within and outside the OC candidate fields not only support these results but also suggest that these objects are not OC remnants. A detailed version of this work can be seen in New Astronomy, 16, 161 (2011).

Detailed studies om three open clusters from Gaia ESO Survey (GES)

NASA Astrophysics Data System (ADS)

Balaguer-Núnez, L.; Casamiquela, L.; Jordana, N.; Massana, P.; Jordi, C.; Masana, E.

2017-03-01

We present results for the intermediate-age and old open clusters NGC 6633, NGC 6705 (M 11) and NGC 2682 (M 67). We have used new Str ̈omgren-Crawford photometry, proper motions from ROA observations and spectral information from Gaia-ESO Survey (GES), to study the physical parameters of the stars in the three cluster's areas. The astrometric studies cover an area of about 1°x2° and down to r' ˜ 17 while our INT-WFC CCD intermediate-band photometry covers an area of about 40'x40' down to V ˜ 19. The stars of those areas selected as cluster members from their proper motions, are classified into photometric regions and their physical parameters determined, using uvbyHβ photometry and standard relations among colour indices for each of the photometric regions of the HR diagram. That allows us to determine reddening, distances, absolute magnitudes, spectral types, effective temperatures, gravities and metallicities, thus providing an astrophysical characterization of the clusters. These results are compared with the physical parameters obtained from GES spectral data as well as radial velocities to confirm membership. All these data lead us to a comparison of photometric and spectroscopic physical parameters.

VizieR Online Data Catalog: Hogg 16 peculiar stars (Cariddi+, 2018)

NASA Astrophysics Data System (ADS)

Cariddi, S.; Azatyan, N. M.; Kurfurst, P.; Stofanova, L.; Netopil, M.; Paunzen, E.; Pintado, O. I.; Aidelman, Y. J.

2017-07-01

The photometric observations of Hogg 16 were performed on 2004 June 15, with the EFOSC2 instrument, installed on the 3.6m telescope at ESO - La Silla within the program 073.C-0144(A), and the target field was centred on the main concentration of stars in the cluster area (J2000 RA=13:29:18, DE=-61:12:00). The field-of-view is about 5.2'x5.2', and the 2x2 binning mode results in a resolution of 0.31"/pixel. Thus, we cover almost the complete cluster area if adopting a diameter of 6' as listed in the updated open cluster catalogue by Dias et al. (2002, version 3.5, Cat. B/ocl). We used a Δa filter set with the following characteristics: g1 (λc=5007Å, FWHM=126Å, TP=78%), g2 (5199, 95, 68), and y (5466, 108, 70). We have investigated 150 stars in the area of the young open cluster Hogg 16 using the Delta-a photometric system. We have performed a membership analysis and identified several chemically peculiar cluster stars. (1 data file).

COS Spectroscopy of White Dwarf Companions to Blue Stragglers

NASA Astrophysics Data System (ADS)

Gosnell, Natalie M.; Geller, Aaron M.; Knigge, Christian; Mathieu, Robert D.; Sills, Alison; Leiner, Emily; Leigh, Nathan

2017-01-01

Complete membership studies of open stellar clusters reveal that 25% of the evolved stars follow alternative pathways in stellar evolution, meaning something in the history of these stars changed their composition or mass (or both). In order to draw a complete picture of stellar evolution we must include these canonically "strange" stars in our definition of standard stellar populations. The formation mechanism of blue straggler stars, traditionally defined to be brighter and bluer than the main sequence turnoff in a star cluster, has been an outstanding question for almost six decades. Recent Hubble Space Telescope (HST) far-ultraviolet (far-UV) observations directly reveal that the blue straggler stars in the old (7 Gyr) open cluster NGC 188 are predominantly formed through mass transfer. We will present HST far-UV COS spectroscopy of white dwarf companions to blue stragglers. These white dwarfs are the remnants of the mass transfer formation process. The effective temperatures and surface gravities of the white dwarfs delineate the timeline of blue straggler formation in this cluster. The existence of these binaries in a well-studied cluster environment provides an unprecedented opportunity to observationally constrain mass transfer models and inform our understanding of many other alternative pathway stellar products.

SPECTROSCOPIC ABUNDANCES AND MEMBERSHIP IN THE WOLF 630 MOVING GROUP

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bubar, Eric J.; King, Jeremy R., E-mail: ebubar@gmail.co, E-mail: jking2@ces.clemson.ed

The concept of kinematic assemblages evolving from dispersed stellar clusters has remained contentious since Eggen's initial formulation of moving groups in the 1960s. With high-quality parallaxes from the Hipparcos space astrometry mission, distance measurements for thousands of nearby, seemingly isolated stars are currently available. With these distances, a high-resolution spectroscopic abundance analysis can be brought to bear on the alleged members of these moving groups. If a structure is a relic of an open cluster, the members can be expected to be monolithic in age and abundance in as much as homogeneity is observed in young open clusters. In thismore » work, we have examined 34 putative members of the proposed Wolf 630 moving group using high-resolution stellar spectroscopy. The stars of the sample have been chemically tagged to determine abundance homogeneity and confirm the existence of a homogeneous subsample of 19 stars. Fitting the homogeneous subsample with Yale-Yonsei isochrones yields a single evolutionary sequence of {approx}2.7 {+-} 0.5 Gyr. It is concluded that this 19 star subsample of the Wolf 630 moving group sample of 34 stars could represent a dispersed cluster with an ([Fe/H]) = -0.01 {+-} 0.02 and an age of 2.7 {+-} 0.5 Gyr. In addition, chemical abundances of Na and Al in giants are examined for indications of enhancements as observed in field giants of old open clusters; overexcitation/ionization effects are explored in the cooler dwarfs of the sample; and oxygen is derived from the infrared triplet and the forbidden line at {lambda}6300.« less

Rotational Periods and Starspot Activity of Young Solar-Type Dwarfs in the Open Cluster IC 4665

NASA Technical Reports Server (NTRS)

Allain, S.; Bouvier, J.; Prosser, C.; Marschall, L. A.; Laaksonen, B. D.

1995-01-01

We present the results of a V-band photometric monitoring survey of 15 late-type dwarfs in the young open cluster IC 4665. Low-amplitude periodic light variations are found for 8 stars and ascribed to the modulation by starspots that cover typically a few percent of the stellar disk. Periods range from 0.6 to 3.7 d, translating to equatorial velocities between 13 and 93 km/s. That no period longer than 4 d was detected suggests a relative paucity of extremely slow rotators (V(sub eq) much less than 10 km/s) among late-type dwarfs in IC 4665. The fractional number of slow rotators in IC 4665 is similar to that of Alpha Per cluster, suggesting that IC 4665 is close in age to Alpha Per (approx. 50 Myr).

Querying Archetype-Based Electronic Health Records Using Hadoop and Dewey Encoding of openEHR Models.

PubMed

Sundvall, Erik; Wei-Kleiner, Fang; Freire, Sergio M; Lambrix, Patrick

2017-01-01

Archetype-based Electronic Health Record (EHR) systems using generic reference models from e.g. openEHR, ISO 13606 or CIMI should be easy to update and reconfigure with new types (or versions) of data models or entries, ideally with very limited programming or manual database tweaking. Exploratory research (e.g. epidemiology) leading to ad-hoc querying on a population-wide scale can be a challenge in such environments. This publication describes implementation and test of an archetype-aware Dewey encoding optimization that can be used to produce such systems in environments supporting relational operations, e.g. RDBMs and distributed map-reduce frameworks like Hadoop. Initial testing was done using a nine-node 2.2 GHz quad-core Hadoop cluster querying a dataset consisting of targeted extracts from 4+ million real patient EHRs, query results with sub-minute response time were obtained.

Implementation of Parallel Dynamic Simulation on Shared-Memory vs. Distributed-Memory Environments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jin, Shuangshuang; Chen, Yousu; Wu, Di

2015-12-09

Power system dynamic simulation computes the system response to a sequence of large disturbance, such as sudden changes in generation or load, or a network short circuit followed by protective branch switching operation. It consists of a large set of differential and algebraic equations, which is computational intensive and challenging to solve using single-processor based dynamic simulation solution. High-performance computing (HPC) based parallel computing is a very promising technology to speed up the computation and facilitate the simulation process. This paper presents two different parallel implementations of power grid dynamic simulation using Open Multi-processing (OpenMP) on shared-memory platform, and Messagemore » Passing Interface (MPI) on distributed-memory clusters, respectively. The difference of the parallel simulation algorithms and architectures of the two HPC technologies are illustrated, and their performances for running parallel dynamic simulation are compared and demonstrated.« less

Diphosphine-protected ultrasmall gold nanoclusters: opened icosahedral Au 13 and heart-shaped Au 8 clusters

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Shan-Shan; Feng, Lei; Senanayake, Ravithree D.

Two ultrasmall gold clusters, Au 13 and Au 8 , were identified as a distorted I h icosahedral Au 13 and edge-shared “core + 4 exo ” structure Au 8 S 2 cores, respectively. They showed interesting luminescence and electrochemical properties.

Diphosphine-protected ultrasmall gold nanoclusters: opened icosahedral Au 13 and heart-shaped Au 8 clusters

DOE PAGES

Zhang, Shan-Shan; Feng, Lei; Senanayake, Ravithree D.; ...

2018-01-01

Two ultrasmall gold clusters, Au 13 and Au 8 , were identified as a distorted I h icosahedral Au 13 and edge-shared “core + 4 exo ” structure Au 8 S 2 cores, respectively. They showed interesting luminescence and electrochemical properties.

High-mass stars in Milky Way clusters

NASA Astrophysics Data System (ADS)

Negueruela, Ignacio

2017-11-01

Young open clusters are our laboratories for studying high-mass star formation and evolution. Unfortunately, the information that they provide is difficult to interpret, and sometimes contradictory. In this contribution, I present a few examples of the uncertainties that we face when confronting observations with theoretical models and our own assumptions.

Merger types forming the Virgo cluster in recent gigayears

NASA Astrophysics Data System (ADS)

Olchanski, M.; Sorce, J. G.

2018-06-01

Context. As our closest cluster-neighbor, the Virgo cluster of galaxies is intensely studied by observers to unravel the mysteries of galaxy evolution within clusters. At this stage, cosmological numerical simulations of the cluster are useful to efficiently test theories and calibrate models. However, it is not trivial to select the perfect simulacrum of the Virgo cluster to fairly compare in detail its observed and simulated galaxy populations that are affected by the type and history of the cluster. Aims: Determining precisely the properties of Virgo for a later selection of simulated clusters becomes essential. It is still not clear how to access some of these properties, such as the past history of the Virgo cluster from current observations. Therefore, directly producing effective simulacra of the Virgo cluster is inevitable. Methods: Efficient simulacra of the Virgo cluster can be obtained via simulations that resemble the local Universe down to the cluster scale. In such simulations, Virgo-like halos form in the proper local environment and permit assessing the most probable formation history of the cluster. Studies based on these simulations have already revealed that the Virgo cluster has had a quiet merging history over the last seven gigayears and that the cluster accretes matter along a preferential direction. Results: This paper reveals that in addition such Virgo halos have had on average only one merger larger than about a tenth of their mass at redshift zero within the last four gigayears. This second branch (by opposition to main branch) formed in a given sub-region and merged recently (within the last gigayear). These properties are not shared with a set of random halos within the same mass range. Conclusions: This study extends the validity of the scheme used to produce the Virgo simulacra down to the largest sub-halos of the Virgo cluster. It opens up great prospects for detailed comparisons with observations, including substructures and markers of past history, to be conducted with a large sample of high resolution "Virgos" and including baryons, in the near future.

Simulating protein folding initiation sites using an alpha-carbon-only knowledge-based force field

PubMed Central

Buck, Patrick M.; Bystroff, Christopher

2015-01-01

Protein folding is a hierarchical process where structure forms locally first, then globally. Some short sequence segments initiate folding through strong structural preferences that are independent of their three-dimensional context in proteins. We have constructed a knowledge-based force field in which the energy functions are conditional on local sequence patterns, as expressed in the hidden Markov model for local structure (HMMSTR). Carbon-alpha force field (CALF) builds sequence specific statistical potentials based on database frequencies for α-carbon virtual bond opening and dihedral angles, pairwise contacts and hydrogen bond donor-acceptor pairs, and simulates folding via Brownian dynamics. We introduce hydrogen bond donor and acceptor potentials as α-carbon probability fields that are conditional on the predicted local sequence. Constant temperature simulations were carried out using 27 peptides selected as putative folding initiation sites, each 12 residues in length, representing several different local structure motifs. Each 0.6 μs trajectory was clustered based on structure. Simulation convergence or representativeness was assessed by subdividing trajectories and comparing clusters. For 21 of the 27 sequences, the largest cluster made up more than half of the total trajectory. Of these 21 sequences, 14 had cluster centers that were at most 2.6 Å root mean square deviation (RMSD) from their native structure in the corresponding full-length protein. To assess the adequacy of the energy function on nonlocal interactions, 11 full length native structures were relaxed using Brownian dynamics simulations. Equilibrated structures deviated from their native states but retained their overall topology and compactness. A simple potential that folds proteins locally and stabilizes proteins globally may enable a more realistic understanding of hierarchical folding pathways. PMID:19137613

The K2 M67 Study: A Curiously Young Star in an Eclipsing Binary in an Old Open Cluster

NASA Astrophysics Data System (ADS)

Sandquist, Eric L.; Mathieu, Robert D.; Quinn, Samuel N.; Pollack, Maxwell L.; Latham, David W.; Brown, Timothy M.; Esselstein, Rebecca; Aigrain, Suzanne; Parviainen, Hannu; Vanderburg, Andrew; Stello, Dennis; Somers, Garrett; Pinsonneault, Marc H.; Tayar, Jamie; Orosz, Jerome A.; Bedin, Luigi R.; Libralato, Mattia; Malavolta, Luca; Nardiello, Domenico

2018-04-01

We present an analysis of a slightly eccentric (e = 0.05), partially eclipsing, long-period (P = 69.73 days) main-sequence binary system (WOCS 12009, Sanders 1247) in the benchmark old open cluster M67. Using Kepler K2 and ground-based photometry, along with a large set of new and reanalyzed spectra, we derived highly precise masses (1.111 ± 0.015 and 0.748 ± 0.005 M ⊙) and radii (1.071 ± 0.008 ± 0.003 and 0.713 ± 0.019 ± 0.026 R ⊙, with statistical and systematic error estimates) for the stars. The radius of the secondary star is in agreement with theory. The primary, however, is approximately 15% smaller than reasonable isochrones for the cluster predict. Our best explanation is that the primary star was produced from the merger of two stars, as this can also account for the nondetection of photospheric lithium and its higher temperature relative to other cluster main-sequence stars at the same V magnitude. To understand the dynamical characteristics (low measured rotational line broadening of the primary star and low eccentricity of the current binary orbit), we believe that the most probable (but not the only) explanation is the tidal evolution of a close binary within a primordial triple system (possibly after a period of Kozai–Lidov oscillations), leading to merger approximately 1 Gyr ago. This star appears to be a future blue straggler that is being revealed as the cluster ages and the most massive main-sequence stars die out. Based on observations made at Kitt Peak National Observatory, National Optical Astronomy Observatory, which is operated by the Association of Universities for Research in Astronomy (AURA) under a cooperative agreement with the National Science Foundation; with the Tillinghast Reflector Echelle Spectrograph (TRES) on the 1.5 m Tillinghast telescope, located at the Smithsonian Astrophysical Observatory’s Fred L. Whipple Observatory on Mt. Hopkins in Arizona; the HARPS-N spectrograph on the Italian Telescopio Nazionale Galileo (TNG), operated on the island of La Palma by the INAF Fundacion Galileo Galilei (Spanish Observatory of Roque de los Muchachos of the IAC); and the Las Cumbres Observatory Global Telescope network.

Jade: using on-demand cloud analysis to give scientists back their flow

NASA Astrophysics Data System (ADS)

Robinson, N.; Tomlinson, J.; Hilson, A. J.; Arribas, A.; Powell, T.

2017-12-01

The UK's Met Office generates 400 TB weather and climate data every day by running physical models on its Top 20 supercomputer. As data volumes explode, there is a danger that analysis workflows become dominated by watching progress bars, and not thinking about science. We have been researching how we can use distributed computing to allow analysts to process these large volumes of high velocity data in a way that's easy, effective and cheap.Our prototype analysis stack, Jade, tries to encapsulate this. Functionality includes: An under-the-hood Dask engine which parallelises and distributes computations, without the need to retrain analysts Hybrid compute clusters (AWS, Alibaba, and local compute) comprising many thousands of cores Clusters which autoscale up/down in response to calculation load using Kubernetes, and balances the cluster across providers based on the current price of compute Lazy data access from cloud storage via containerised OpenDAP This technology stack allows us to perform calculations many orders of magnitude faster than is possible on local workstations. It is also possible to outperform dedicated local compute clusters, as cloud compute can, in principle, scale to much larger scales. The use of ephemeral compute resources also makes this implementation cost efficient.

A Review of Subsequence Time Series Clustering

PubMed Central

Teh, Ying Wah

2014-01-01

Clustering of subsequence time series remains an open issue in time series clustering. Subsequence time series clustering is used in different fields, such as e-commerce, outlier detection, speech recognition, biological systems, DNA recognition, and text mining. One of the useful fields in the domain of subsequence time series clustering is pattern recognition. To improve this field, a sequence of time series data is used. This paper reviews some definitions and backgrounds related to subsequence time series clustering. The categorization of the literature reviews is divided into three groups: preproof, interproof, and postproof period. Moreover, various state-of-the-art approaches in performing subsequence time series clustering are discussed under each of the following categories. The strengths and weaknesses of the employed methods are evaluated as potential issues for future studies. PMID:25140332

A review of subsequence time series clustering.

PubMed

Zolhavarieh, Seyedjamal; Aghabozorgi, Saeed; Teh, Ying Wah

2014-01-01

Clustering of subsequence time series remains an open issue in time series clustering. Subsequence time series clustering is used in different fields, such as e-commerce, outlier detection, speech recognition, biological systems, DNA recognition, and text mining. One of the useful fields in the domain of subsequence time series clustering is pattern recognition. To improve this field, a sequence of time series data is used. This paper reviews some definitions and backgrounds related to subsequence time series clustering. The categorization of the literature reviews is divided into three groups: preproof, interproof, and postproof period. Moreover, various state-of-the-art approaches in performing subsequence time series clustering are discussed under each of the following categories. The strengths and weaknesses of the employed methods are evaluated as potential issues for future studies.

The apparent overdensity of open clusters in the Canis Major overdensity

NASA Astrophysics Data System (ADS)

Piatti, Andrés E.; Clariá, Juan J.

2008-10-01

The exciting debate on the existence and nature of the relatively recent discovery of the so-called Canis Major (CMa) overdensity is re-examined here based on the positions, reddenings, ages and metallicities of Galactic open clusters (OCs). The data used to carry out the current study were taken from the recently updated version of the Dias et al.'s 1776 OC catalogue. We found that only Tombaugh 2 is physically located within the main body of CMa. Even if we take into account the whole sample of catalogued OCs with unknown distances, it is statistically expected that only one additional OC could be found within the CMa region. Since the CMa overdensity appears to be quite transparent to dust, only a few OCs in that zone could have been missed. Both metallicity and age distributions of OCs located in the Galactic outer disc, including Tombaugh 2 and those projected on to CMa, are in good agreement with the paradigm of a main dispersion of age and metallicity values. There are only marginal indications for a radial abundance variation. We conclude that CMa does not contain a significant population of OCs which share its properties. This result does not favour the dwarf galaxy scenario.

Using Open Clusters to Trace the Local Milky Way Rotation Curve and Velocity Field

NASA Astrophysics Data System (ADS)

Frinchaboy, Peter M.; Majewski, S. R.

2006-12-01

Establishing the rotation curve of the Milky Way is one of the fundamental contributions needed to understand the Galaxy and its mass distribution. We have undertaken a systematic spectroscopic survey of open star clusters which can serve as tracers of Galactic disk dynamics. We report on our initial sample of 67 clusters for which the Hydra multi-fiber spectrographs on the WIYN and Blanco telescopes have delivered 1-2 km/s radial velocities (RVs) of many dozens of stars in the fields of each cluster, which are used to derive cluster membership and bulk cluster kinematics when combined with Tycho-2 proper motions. The clusters selected for study have a broad spatial distribution in order to be sensitive to the disk velocity field in all Galactic quadrants and across a Galactocentric radius range as much as 3.0 kpc from the solar circle. Through analysis of the cluster sample, we find (1) the rotation velocity of the LSR is 221 (+2,-4) km/s, (2) the local rotation curve is declining with radius having a slope of -9.0 km/s/kpc, (3) we find (using R_0 = 8.5 kpc) the following Galactic parameters: A = 17.0 km/s/kpc and B = -8.9 km/s/kpc, which yields a Galaxy mass within of 1.5 R_0 of M = 0.9 ± 0.2 x 10^11 solar masses and a M/L of 5.9 in solar units. We also explore the distribution of the local velocity field and find evidence for non-circular motion due to the sprial arms.

Photometric study of open star clusters in II quadrant: Teutsch 1 and Riddle 4

NASA Astrophysics Data System (ADS)

Bisht, D.; Yadav, R. K. S.; Durgapal, A. K.

2016-01-01

We present the broad band UBVI CCD photometry in the region of two open star clusters Teutsch 1 and Riddle 4 located in the second Galactic quadrant. The optical CCD data for these clusters are obtained for the first time. Radii of the clusters are estimated as 3‧.5 for both the clusters. Using two color (U - B) versus (B - V) diagram we determined the reddening as E(B - V) = 0.40 ± 0.05 mag for Teutsch 1 and 1.10 ± 0.05 mag for Riddle 4. Using 2MASS JHK and optical data, we estimated E(J - K) = 0.24 ± 0.05 mag and E(V - K) = 1.40 ± 0.05 mag for Teutsch 1 and E(J - K) = 0.47 ± 0.06 mag and E(V - K) = 2.80 ± 0.06 mag for Riddle 4. Color-excess ratio indicates normal interstellar extinction law in the direction of both the clusters. We estimated distance as 4.3 ± 0.5 Kpc for Teutsch 1 and 2.8 ± 0.2 Kpc for Riddle 4 by comparing the color-magnitude diagram of the clusters with theoretical isochrones. The age of the clusters has been estimated as 200 ± 20 Myr for Teutsch 1 and 40 ± 10 Myr for Riddle 4 using the stellar isochrones of metallicity Z = 0.02 . The Mass function slope has been derived 1.89 ± 0.43 and 1.41 ± 0.70 for Teutsch 1 and Riddle 4 respectively. Our analysis indicates that both the clusters are dynamically relaxed. A slight bend of Galactic disc towards the southern latitude is found in the longitude range l = 130-180°.

Color-magnitude Diagrams for the Stellar Open Cluster M 67 in theVilnius Photometric System

NASA Astrophysics Data System (ADS)

Boyle, Richard P.; Janusz, Robert

2015-01-01

Stellar photometry in the Vilnius Photometric System requires one percent quality for deriving luminosity class and spectral type subclass. We use such existing photometry of the open cluster M 67 to calibrate new CCD observations at the Vatican Advanced Technology Telescope (VATT) for correcting the flat-fielding zero-point and deriving the color-transformation in this intermediate-band, seven filter system (Boyle et al., BAAS 37 #4, 2005).Recently we have developed a "tie-in" observational practice to apply the zero-point and color transformation of the M 67 observations to neighboring starfields of interest that have no existing photometry. Sky transparency must remain constant to better than one percent during a round of short exposures in a filter between the field having calibrated photometry and the new field having no photometry as if the new field was exposed simultaneously with the master field.Proof of success for this "tie-in" method is shown with the master field being M 67 and the "tie-in" field being the nearby extended "corona" area. The distinctive color-magnitude diagrams of the old open clusterM 67 reveal the sensitivity to having constant sky transparency during the round of short exposures on M 67 and its extended area. For the extended area has the same form in its color-magnitude diagram as M 67. So variation in sky transparency shows displacement on the color-magnitude diagrams at the one percent quality.We will attempt new analysis concerning evolution of this very old open cluster (2.56 Gyr, WEBDA, http://www.univie.ac.at/webda/) and the surrounding "coronal" extent with reference to previous work by Chupina and Vereshchagin (Astron. Astrophys, 334, 552, 1998).

Exploring the galaxy cluster-group transition regime at high redshifts. Physical properties of two newly detected z > 1 systems

NASA Astrophysics Data System (ADS)

Šuhada, R.; Fassbender, R.; Nastasi, A.; Böhringer, H.; de Hoon, A.; Pierini, D.; Santos, J. S.; Rosati, P.; Mühlegger, M.; Quintana, H.; Schwope, A. D.; Lamer, G.; Kohnert, J.; Pratt, G. W.

2011-06-01

Context. Multi-wavelength surveys for clusters of galaxies are opening a window on the elusive high-redshift (z > 1) cluster population. Well controlled statistical samples of distant clusters will enable us to answer questions about their cosmological context, early assembly phases and the thermodynamical evolution of the intracluster medium. Aims: We report on the detection of two z > 1 systems, XMMU J0302.2-0001 and XMMU J1532.2-0836, as part of the XMM-Newton Distant Cluster Project (XDCP) sample. We investigate the nature of the sources, measure their spectroscopic redshift and determine their basic physical parameters. Methods: The results of the present paper are based on the analysis of XMM-Newton archival data, optical/near-infrared imaging and deep optical follow-up spectroscopy of the clusters. Results: We confirm the X-ray source XMMU J0302.2-0001 as a gravitationally bound, bona fide cluster of galaxies at spectroscopic redshift z = 1.185. We estimate its M500 mass to (1.6 ± 0.3) × 1014 M⊙ from its measured X-ray luminosity. This ranks the cluster among intermediate mass system. In the case of XMMU J1532.2-0836 we find the X-ray detection to be coincident with a dynamically bound system of galaxies at z = 1.358. Optical spectroscopy reveals the presence of a central active galactic nucleus, which can be a dominant source of the detected X-ray emission from this system. We provide upper limits of X-ray parameters for the system and discuss cluster identification challenges in the high-redshift low-mass cluster regime. A third, intermediate redshift (z = 0.647) cluster, XMMU J0302.1-0000, is serendipitously detected in the same field as XMMU J0302.2-0001. We provide its analysis as well. Based on observations obtained with ESO Telescopes at the Paranal Observatory under program ID 080.A-0659 and 081.A-0312, observations collected at the Centro Astrnómico Hispano Alemán (CAHA) at Calar Alto, Spain operated jointly by the Max-Planck Institut für Astronomie and the Instituto de Astrofísica de Andalucía (CSIC). X-ray observations were obtained by XMM-Newton.

Impact of a star formation efficiency profile on the evolution of open clusters

NASA Astrophysics Data System (ADS)

Shukirgaliyev, B.; Parmentier, G.; Berczik, P.; Just, A.

2017-09-01

Aims: We study the effect of the instantaneous expulsion of residual star-forming gas on star clusters in which the residual gas has a density profile that is shallower than that of the embedded cluster. This configuration is expected if star formation proceeds with a given star-formation efficiency per free-fall time in a centrally concentrated molecular gas clump. Methods: We performed direct N-body simulations whose initial conditions were generated by the program "mkhalo" from the package "falcON", adapted for our models. Our model clusters initially had a Plummer profile and are in virial equilibrium with the gravitational potential of the cluster-forming clump. The residual gas contribution was computed based on a local-density driven clustered star formation model. Our simulations included mass loss by stellar evolution and the tidal field of a host galaxy. Results: We find that a star cluster with a minimum global star formation efficiency (SFE) of 15 percent is able to survive instantaneous gas expulsion and to produce a bound cluster. Its violent relaxation lasts no longer than 20 Myr, independently of its global SFE and initial stellar mass. At the end of violent relaxation, the bound fractions of the surviving clusters with the same global SFEs are similar, regardless of their initial stellar mass. Their subsequent lifetime in the gravitational field of the Galaxy depends on their bound stellar masses. Conclusions: We therefore conclude that the critical SFE needed to produce a bound cluster is 15 percent, which is roughly half the earlier estimates of 33 percent. Thus we have improved the survival likelihood of young clusters after instantaneous gas expulsion. Young clusters can now survive instantaneous gas expulsion with a global SFEs as low as the SFEs observed for embedded clusters in the solar neighborhood (15-30 percent). The reason is that the star cluster density profile is steeper than that of the residual gas. However, in terms of the effective SFE, measured by the virial ratio of the cluster at gas expulsion, our results are in agreement with previous studies.

Modeling healthcare authorization and claim submissions using the openEHR dual-model approach

PubMed Central

2011-01-01

Background The TISS standard is a set of mandatory forms and electronic messages for healthcare authorization and claim submissions among healthcare plans and providers in Brazil. It is not based on formal models as the new generation of health informatics standards suggests. The objective of this paper is to model the TISS in terms of the openEHR archetype-based approach and integrate it into a patient-centered EHR architecture. Methods Three approaches were adopted to model TISS. In the first approach, a set of archetypes was designed using ENTRY subclasses. In the second one, a set of archetypes was designed using exclusively ADMIN_ENTRY and CLUSTERs as their root classes. In the third approach, the openEHR ADMIN_ENTRY is extended with classes designed for authorization and claim submissions, and an ISM_TRANSITION attribute is added to the COMPOSITION class. Another set of archetypes was designed based on this model. For all three approaches, templates were designed to represent the TISS forms. Results The archetypes based on the openEHR RM (Reference Model) can represent all TISS data structures. The extended model adds subclasses and an attribute to the COMPOSITION class to represent information on authorization and claim submissions. The archetypes based on all three approaches have similar structures, although rooted in different classes. The extended openEHR RM model is more semantically aligned with the concepts involved in a claim submission, but may disrupt interoperability with other systems and the current tools must be adapted to deal with it. Conclusions Modeling the TISS standard by means of the openEHR approach makes it aligned with ISO recommendations and provides a solid foundation on which the TISS can evolve. Although there are few administrative archetypes available, the openEHR RM is expressive enough to represent the TISS standard. This paper focuses on the TISS but its results may be extended to other billing processes. A complete communication architecture to simulate the exchange of TISS data between systems according to the openEHR approach still needs to be designed and implemented. PMID:21992670

OpenSWPC: an open-source integrated parallel simulation code for modeling seismic wave propagation in 3D heterogeneous viscoelastic media

NASA Astrophysics Data System (ADS)

Maeda, Takuto; Takemura, Shunsuke; Furumura, Takashi

2017-07-01

We have developed an open-source software package, Open-source Seismic Wave Propagation Code (OpenSWPC), for parallel numerical simulations of seismic wave propagation in 3D and 2D (P-SV and SH) viscoelastic media based on the finite difference method in local-to-regional scales. This code is equipped with a frequency-independent attenuation model based on the generalized Zener body and an efficient perfectly matched layer for absorbing boundary condition. A hybrid-style programming using OpenMP and the Message Passing Interface (MPI) is adopted for efficient parallel computation. OpenSWPC has wide applicability for seismological studies and great portability to allowing excellent performance from PC clusters to supercomputers. Without modifying the code, users can conduct seismic wave propagation simulations using their own velocity structure models and the necessary source representations by specifying them in an input parameter file. The code has various modes for different types of velocity structure model input and different source representations such as single force, moment tensor and plane-wave incidence, which can easily be selected via the input parameters. Widely used binary data formats, the Network Common Data Form (NetCDF) and the Seismic Analysis Code (SAC) are adopted for the input of the heterogeneous structure model and the outputs of the simulation results, so users can easily handle the input/output datasets. All codes are written in Fortran 2003 and are available with detailed documents in a public repository.[Figure not available: see fulltext.

The Origin Billions Star Survey: Galactic Explorer

DTIC Science & Technology

2006-10-18

Using OBSS, it will be possible to measure proper motions of galaxies (the motion in the plane of the sky) out to the distance of the Virgo Cluster ...within the Milky Way, as well as the local group toward the Virgo Cluster , will also be discerned at the microarcsecond level. All of this will be...supercluster of galaxies, dark matter, star for- mation, open clusters , the solar system, and the celestial ref- erence frame. This research was supported by

Concerted Changes in Gene Expression and Cell Physiology of the Cyanobacterium Synechocystis sp. Strain PCC 6803 during Transitions between Nitrogen and Light-Limited Growth1[W][OA

PubMed Central

Aguirre von Wobeser, Eneas; Ibelings, Bas W.; Bok, Jasper; Krasikov, Vladimir; Huisman, Jef; Matthijs, Hans C.P.

2011-01-01

Physiological adaptation and genome-wide expression profiles of the cyanobacterium Synechocystis sp. strain PCC 6803 in response to gradual transitions between nitrogen-limited and light-limited growth conditions were measured in continuous cultures. Transitions induced changes in pigment composition, light absorption coefficient, photosynthetic electron transport, and specific growth rate. Physiological changes were accompanied by reproducible changes in the expression of several hundred open reading frames, genes with functions in photosynthesis and respiration, carbon and nitrogen assimilation, protein synthesis, phosphorus metabolism, and overall regulation of cell function and proliferation. Cluster analysis of the nearly 1,600 regulated open reading frames identified eight clusters, each showing a different temporal response during the transitions. Two large clusters mirrored each other. One cluster included genes involved in photosynthesis, which were up-regulated during light-limited growth but down-regulated during nitrogen-limited growth. Conversely, genes in the other cluster were down-regulated during light-limited growth but up-regulated during nitrogen-limited growth; this cluster included several genes involved in nitrogen uptake and assimilation. These results demonstrate complementary regulation of gene expression for two major metabolic activities of cyanobacteria. Comparison with batch-culture experiments revealed interesting differences in gene expression between batch and continuous culture and illustrates that continuous-culture experiments can pick up subtle changes in cell physiology and gene expression. PMID:21205618

Execution of a parallel edge-based Navier-Stokes solver on commodity graphics processor units

NASA Astrophysics Data System (ADS)

Corral, Roque; Gisbert, Fernando; Pueblas, Jesus

2017-02-01

The implementation of an edge-based three-dimensional Reynolds Average Navier-Stokes solver for unstructured grids able to run on multiple graphics processing units (GPUs) is presented. Loops over edges, which are the most time-consuming part of the solver, have been written to exploit the massively parallel capabilities of GPUs. Non-blocking communications between parallel processes and between the GPU and the central processor unit (CPU) have been used to enhance code scalability. The code is written using a mixture of C++ and OpenCL, to allow the execution of the source code on GPUs. The Message Passage Interface (MPI) library is used to allow the parallel execution of the solver on multiple GPUs. A comparative study of the solver parallel performance is carried out using a cluster of CPUs and another of GPUs. It is shown that a single GPU is up to 64 times faster than a single CPU core. The parallel scalability of the solver is mainly degraded due to the loss of computing efficiency of the GPU when the size of the case decreases. However, for large enough grid sizes, the scalability is strongly improved. A cluster featuring commodity GPUs and a high bandwidth network is ten times less costly and consumes 33% less energy than a CPU-based cluster with an equivalent computational power.

Towards Accurate Modelling of Galaxy Clustering on Small Scales: Testing the Standard ΛCDM + Halo Model

NASA Astrophysics Data System (ADS)

Sinha, Manodeep; Berlind, Andreas A.; McBride, Cameron K.; Scoccimarro, Roman; Piscionere, Jennifer A.; Wibking, Benjamin D.

2018-04-01

Interpreting the small-scale clustering of galaxies with halo models can elucidate the connection between galaxies and dark matter halos. Unfortunately, the modelling is typically not sufficiently accurate for ruling out models statistically. It is thus difficult to use the information encoded in small scales to test cosmological models or probe subtle features of the galaxy-halo connection. In this paper, we attempt to push halo modelling into the "accurate" regime with a fully numerical mock-based methodology and careful treatment of statistical and systematic errors. With our forward-modelling approach, we can incorporate clustering statistics beyond the traditional two-point statistics. We use this modelling methodology to test the standard ΛCDM + halo model against the clustering of SDSS DR7 galaxies. Specifically, we use the projected correlation function, group multiplicity function and galaxy number density as constraints. We find that while the model fits each statistic separately, it struggles to fit them simultaneously. Adding group statistics leads to a more stringent test of the model and significantly tighter constraints on model parameters. We explore the impact of varying the adopted halo definition and cosmological model and find that changing the cosmology makes a significant difference. The most successful model we tried (Planck cosmology with Mvir halos) matches the clustering of low luminosity galaxies, but exhibits a 2.3σ tension with the clustering of luminous galaxies, thus providing evidence that the "standard" halo model needs to be extended. This work opens the door to adding interesting freedom to the halo model and including additional clustering statistics as constraints.

Interstellar reddening information system

NASA Astrophysics Data System (ADS)

Burnashev, V. I.; Grigorieva, E. A.; Malkov, O. Yu.

2013-10-01

We describe an electronic bibliographic information system, based on a card catalog, containing some 2500 references (publications of 1930-2009) on interstellar extinction. We have classified the articles according to their content. We present here a list of articles devoted to two categories: maps of total extinction and variation of interstellar extinction with the distance to the object. The catalog is tested using published data on open clusters, and conclusions on the applicability of different maps of interstellar extinctions for various distances are made.

SLURM: Simple Linux Utility for Resource Management

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jette, M; Grondona, M

2002-12-19

Simple Linux Utility for Resource Management (SLURM) is an open source, fault-tolerant, and highly scalable cluster management and job scheduling system for Linux clusters of thousands of nodes. Components include machine status, partition management, job management, scheduling and stream copy modules. This paper presents an overview of the SLURM architecture and functionality.

SLURM: Simplex Linux Utility for Resource Management

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jette, M; Grondona, M

2003-04-22

Simple Linux Utility for Resource Management (SLURM) is an open source, fault-tolerant, and highly scalable cluster management and job scheduling system for Linux clusters of thousands of nodes. Components include machine status, partition management, job management, scheduling, and stream copy modules. This paper presents an overview of the SLURM architecture and functionality.

Kinematical Focus on NGC 7086

NASA Astrophysics Data System (ADS)

Tadross, A. L.

2005-12-01

The main physical parameters; the cluster center, distance, radius, age, reddening, and visual absorbtion; have been re-estimated and improved for the open cluster NGC 7086. The metal abundance, galactic distances, membership richness, luminosity function, mass function, and the total mass of NGC 7086 have been examined for the first time here using Monet et al. (2003) catalog.

M16

NASA Astrophysics Data System (ADS)

Murdin, P.

2000-11-01

M16 is an open cluster in the constellation Serpens, associated with the EAGLE NEBULA (1 degree north and 2.5 degrees west of γ Scuti). It was discovered by de Chéseaux in 1746 as a `cluster of stars' and sits on the next inner spiral arm of the galaxy away from us next to M17....

Direct evidence on the existence of [Mo132]Keplerate-type species in aqueous solution.

PubMed

Roy, Soumyajit; Planken, Karel L; Kim, Robbert; Mandele, Dexx v d; Kegel, Willem K

2007-10-15

We demonstrate the existence of discrete single molecular [Mo(132)] Keplerate-type clusters in aqueous solution. Starting from a discrete spherical [Mo(132)] cluster, the formation of an open-basket-type [Mo(116)] defect structure is shown for the first time in solution using analytical ultracentrifugation sedimentation velocity experiments.

iso-Migrastatin, migrastatin, and dorrigocin production in Streptomyces platensis NRRL 18993 is governed by a single biosynthetic machinery featuring an acyltransferase-less type I polyketide synthase.

PubMed

Lim, Si-Kyu; Ju, Jianhua; Zazopoulos, Emmanuel; Jiang, Hui; Seo, Jeong-Woo; Chen, Yihua; Feng, Zhiyang; Rajski, Scott R; Farnet, Chris M; Shen, Ben

2009-10-23

iso-Migrastatin and related glutarimide-containing polyketides are potent inhibitors of tumor cell migration and their implied potential as antimetastatic agents for human cancers has garnered significant attention. Genome scanning of Streptomyces platensis NRRL 18993 unveiled two candidate gene clusters (088D and mgs); each encodes acyltransferase-less type I polyketide synthases commensurate with iso-migrastatin biosynthesis. Both clusters were inactivated by lambda-RED-mediated PCR-targeting mutagenesis in S. platensis; iso-migrastatin production was completely abolished in the DeltamgsF mutant SB11012 strain, whereas inactivation of 088D-orf7 yielded the SB11006 strain that exhibited no discernible change in iso-migrastatin biosynthesis. These data indicate that iso-migrastatin production is governed by the mgs cluster. Systematic gene inactivation allowed determination of the precise boundaries of the mgs cluster and the essentiality of the genes within the mgs cluster in iso-migrastatin production. The mgs cluster consists of 11 open reading frames that encode three acyltransferase-less type I polyketide synthases (MgsEFG), one discrete acyltransferase (MgsH), a type II thioesterase (MgsB), three post-PKS tailoring enzymes (MgsIJK), two glutarimide biosynthesis enzymes (MgsCD), and one regulatory protein (MgsA). A model for iso-migrastatin biosynthesis is proposed based on functional assignments derived from bioinformatics and is further supported by the results of in vivo gene inactivation experiments.

iso-Migrastatin, Migrastatin, and Dorrigocin Production in Streptomyces platensis NRRL 18993 Is Governed by a Single Biosynthetic Machinery Featuring an Acyltransferase-less Type I Polyketide Synthase*

PubMed Central

Lim, Si-Kyu; Ju, Jianhua; Zazopoulos, Emmanuel; Jiang, Hui; Seo, Jeong-Woo; Chen, Yihua; Feng, Zhiyang; Rajski, Scott R.; Farnet, Chris M.; Shen, Ben

2009-01-01

iso-Migrastatin and related glutarimide-containing polyketides are potent inhibitors of tumor cell migration and their implied potential as antimetastatic agents for human cancers has garnered significant attention. Genome scanning of Streptomyces platensis NRRL 18993 unveiled two candidate gene clusters (088D and mgs); each encodes acyltransferase-less type I polyketide synthases commensurate with iso-migrastatin biosynthesis. Both clusters were inactivated by λ-RED-mediated PCR-targeting mutagenesis in S. platensis; iso-migrastatin production was completely abolished in the ΔmgsF mutant SB11012 strain, whereas inactivation of 088D-orf7 yielded the SB11006 strain that exhibited no discernible change in iso-migrastatin biosynthesis. These data indicate that iso-migrastatin production is governed by the mgs cluster. Systematic gene inactivation allowed determination of the precise boundaries of the mgs cluster and the essentiality of the genes within the mgs cluster in iso-migrastatin production. The mgs cluster consists of 11 open reading frames that encode three acyltransferase-less type I polyketide synthases (MgsEFG), one discrete acyltransferase (MgsH), a type II thioesterase (MgsB), three post-PKS tailoring enzymes (MgsIJK), two glutarimide biosynthesis enzymes (MgsCD), and one regulatory protein (MgsA). A model for iso-migrastatin biosynthesis is proposed based on functional assignments derived from bioinformatics and is further supported by the results of in vivo gene inactivation experiments. PMID:19726666

Structural and magnetic properties of FeGen-/0 (n = 3-12) clusters: Mass-selected anion photoelectron spectroscopy and density functional theory calculations

NASA Astrophysics Data System (ADS)

Deng, Xiao-Jiao; Kong, Xiang-Yu; Liang, Xiaoqing; Yang, Bin; Xu, Hong-Guang; Xu, Xi-Ling; Feng, Gang; Zheng, Wei-Jun

2017-12-01

The structural, electronic, and magnetic properties of FeGen-/0 (n = 3-12) clusters were investigated by using anion photoelectron spectroscopy in combination with density functional theory calculations. For both anionic and neutral FeGen (n = 3-12) clusters with n ≤ 7, the dominant structures are exohedral. The FeGe8-/0 clusters have half-encapsulated boat-shaped structures, and the opening of the boat-shaped structure is gradually covered by the additional Ge atoms to form Gen cage from n = 9 to 11. The structures of FeGe10-/0 can be viewed as two Ge atoms symmetrically capping the opening of the boat-shaped structure of FeGe8, and those of FeGe12-/0 are distorted hexagonal prisms with the Fe atom at the center. Natural population analysis shows that there is an electron transfer from the Ge atoms to the Fe atom at n = 8-12. The total magnetic moment of FeGen-/0 and local magnetic moment of the Fe atom have not been quenched.

The Problem of Hipparcos Distances to Open Clusters. II. Constraints from Nearby Field Theory. Report 2; ClustersConstraints from nearly Field Stars

NASA Technical Reports Server (NTRS)

Soderblom, David R.; King, Jeremy R.; Hanson, Robert B.; Jones, Burton F.; Fischer, Debra; Stauffer, John R.; Pinsonneault, Marc H.

1998-01-01

This paper examines the discrepancy between distances to nearby open clusters as determined by parallaxes from Hipparcos compared to traditional main-sequence fitting. The biggest difference is seen for the Pleiades, and our hypothesis is that if the Hipparcos distance to the Pleiades is correct, then similar subluminous zero-age main-sequence (ZAMS) stars should exist elsewhere, including in the immediate solar neighborhood. We examine a color-magnitude diagram of very young and nearby solar-type stars and show that none of them lie below the traditional ZAMS, despite the fact that the Hipparcos Pleiades parallax would place its members 0.3 mag below that ZAMS. We also present analyses and observations of solar-type stars that do lie below the ZAMS, and we show that they are subluminous because of low metallicity and that they have the kinematics of old stars.