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Sample records for open gln spin

  1. Open Rotor Spin Test

    NASA Video Gallery

    An open rotor, also known as a high-speed propeller, is tested in a wind tunnel. The propeller moves much more quickly than a standard propeller, and the blades of the propeller are shaped differen...

  2. Cytosolic Glutamine Synthetase Gln1;2 Is the Main Isozyme Contributing to GS1 Activity and Can Be Up-Regulated to Relieve Ammonium Toxicity1[OPEN

    PubMed Central

    Pedersen, Carsten

    2016-01-01

    Cytosolic GS1 (Gln synthetase) is central for ammonium assimilation in plants. High ammonium treatment enhanced the expression of the GS1 isogene Gln-1;2 encoding a low-affinity high-capacity GS1 protein in Arabidopsis (Arabidopsis thaliana) shoots. Under the same conditions, the expression of the high-affinity low-capacity isoform Gln-1;1 was reduced. The expression of Gln-1;3 did not respond to ammonium treatment while Gln-1;4 and Gln-1;5 isogenes in all cases were expressed at a very low level. Gln-2 was highly expressed in shoots but only at a very low level in roots. To investigate the specific functions of the two isogenes Gln-1;1 and Gln-1;2 in shoots for ammonium detoxification, single and double knock-out mutants were grown under standard N supply or with high ammonium provision. Phenotypes of the single mutant gln1;1 were similar to the wild type, while growth of the gln1;2 single mutant and the gln1;1:gln1;2 double mutant was significantly impaired irrespective of N regime. GS1 activity was significantly reduced in both gln1;2 and gln1;1:gln1;2. Along with this, the ammonium content increased while that of Gln decreased, showing that Gln-1;2 was essential for ammonium assimilation and amino acid synthesis. We conclude that Gln-1;2 is the main isozyme contributing to shoot GS1 activity in vegetative growth stages and can be up-regulated to relieve ammonium toxicity. This reveals, to our knowledge, a novel shoot function of Gln-1;2 in Arabidopsis shoots. PMID:27231101

  3. Higher spins and open strings: Quartic interactions

    SciTech Connect

    Polyakov, Dimitri

    2011-02-15

    We analyze quartic gauge-invariant interactions of massless higher spin fields by using vertex operators constructed in our previous works and computing their 4-point amplitudes in superstring theory. The kinematic part of the quartic interactions of the higher spins is determined by the matter structure of their vertex operators; the nonlocality of the interactions is the consequence of the specific ghost structure of these operators. We compute explicitly the 4-point amplitude describing the complete gauge-invariant 1-1-3-3 quartic interaction (two massless spin 3 particles interacting with two photons) and comment on more general 1-1-s-s cases, particularly pointing out the structure of 1-1-5-5 coupling.

  4. Sudden transition and sudden change from open spin environments

    SciTech Connect

    Hu, Zheng-Da; Xu, Jing-Bo; Yao, Dao-Xin

    2014-11-15

    We investigate the necessary conditions for the existence of sudden transition or sudden change phenomenon for appropriate initial states under dephasing. As illustrative examples, we study the behaviors of quantum correlation dynamics of two noninteracting qubits in independent and common open spin environments, respectively. For the independent environments case, we find that the quantum correlation dynamics is closely related to the Loschmidt echo and the dynamics exhibits a sudden transition from classical to quantum correlation decay. It is also shown that the sudden change phenomenon may occur for the common environment case and stationary quantum discord is found at the high temperature region of the environment. Finally, we investigate the quantum criticality of the open spin environment by exploring the probability distribution of the Loschmidt echo and the scaling transformation behavior of quantum discord, respectively. - Highlights: • Sudden transition or sudden change from open spin baths are studied. • Quantum discord is related to the Loschmidt echo in independent open spin baths. • Steady quantum discord is found in a common open spin bath. • The probability distribution of the Loschmidt echo is analyzed. • The scaling transformation behavior of quantum discord is displayed.

  5. Q-operators for the open Heisenberg spin chain

    NASA Astrophysics Data System (ADS)

    Frassek, Rouven; Szécsényi, István M.

    2015-12-01

    We construct Q-operators for the open spin-1/2 XXX Heisenberg spin chain with diagonal boundary matrices. The Q-operators are defined as traces over an infinite-dimensional auxiliary space involving novel types of reflection operators derived from the boundary Yang-Baxter equation. We argue that the Q-operators defined in this way are polynomials in the spectral parameter and show that they commute with transfer matrix. Finally, we prove that the Q-operators satisfy Baxter's TQ-equation and derive the explicit form of their eigenvalues in terms of the Bethe roots.

  6. PULSAR BINARY BIRTHRATES WITH SPIN-OPENING ANGLE CORRELATIONS

    SciTech Connect

    O'Shaughnessy, Richard; Kim, Chunglee E-mail: ckim@astro.lu.s

    2010-05-20

    One ingredient in an empirical birthrate estimate for pulsar binaries is the fraction of sky subtended by the pulsar beam: the pulsar beaming fraction. This fraction depends on both the pulsar's opening angle and the misalignment angle between its spin and magnetic axes. The current estimates for pulsar binary birthrates are based on an average value of beaming fractions for only two pulsars, i.e., PSRs B1913+16 and B1534+12. In this paper, we revisit the observed pulsar binaries to examine the sensitivity of birthrate predictions to different assumptions regarding opening angle and alignment. Based on empirical estimates for the relative likelihood of different beam half-opening angles and misalignment angles between the pulsar rotation and magnetic axes, we calculate an effective beaming correction factor, f{sub b,eff}, whose reciprocal is equivalent to the average fraction of all randomly selected pulsars that point toward us. For those pulsars without any direct beam geometry constraints, we find that f{sub b,eff} is likely to be smaller than 6, a canonically adopted value when calculating birthrates of Galactic pulsar binaries. We calculate f{sub b,eff} for PSRs J0737-3039A and J1141-6545, applying the currently available constraints for their beam geometry. As in previous estimates of the posterior probability density function P(R) for pulsar binary birthrates R, PSRs J0737-3039A and J1141-6545 still significantly contribute to, if not dominate, the Galactic birthrate of tight pulsar-neutron star (NS) and pulsar-white dwarf (WD) binaries, respectively. Our median posterior present-day birthrate predictions for tight PSR-NS binaries, wide PSR-NS binaries, and tight PSR-WD binaries given a preferred pulsar population model and beaming geometry are 89 Myr{sup -1}, 0.5 Myr{sup -1}, and 34 Myr{sup -1}, respectively. For long-lived PSR-NS binaries, these estimates include a weak (x1.6) correction for slowly decaying star formation in the galactic disk. For pulsars

  7. Spin polarized bound states in the continuum in open Aharonov-Bohm rings with the Rashba spin-orbit interaction.

    PubMed

    Bulgakov, Evgeny N; Sadreev, Almas F

    2016-07-01

    We consider the trapping of electrons with a definite spin polarization by bound states in the continuum (BSC) in the open Aharonov-Bohm rings in the presence of the Rashba spin-orbit interaction (RSOI). Neglecting the Zeeman term we show the existence of BSCs in the one-dimensional ring when the eigenstates of the closed ring are doubly degenerate. With account of the Zeeman term BSCs occur only at the points of threefold degeneracy. The BSCs are found in the parametric space of flux and RSOI strength in close pairs with opposite spin polarization. Thereby the spin polarization of electrons transmitted through the ring can be altered by minor variation of magnetic or electric field at the vicinity of these pairs. Numerical simulations of the two-dimensional open ring show similar results for the BSCs. Encircling the BSC points in the parametric space of the flux and the RSOI constant gives rise to a geometric phase. PMID:27165662

  8. Spin polarized bound states in the continuum in open Aharonov-Bohm rings with the Rashba spin-orbit interaction

    NASA Astrophysics Data System (ADS)

    Bulgakov, Evgeny N.; Sadreev, Almas F.

    2016-07-01

    We consider the trapping of electrons with a definite spin polarization by bound states in the continuum (BSC) in the open Aharonov-Bohm rings in the presence of the Rashba spin-orbit interaction (RSOI). Neglecting the Zeeman term we show the existence of BSCs in the one-dimensional ring when the eigenstates of the closed ring are doubly degenerate. With account of the Zeeman term BSCs occur only at the points of threefold degeneracy. The BSCs are found in the parametric space of flux and RSOI strength in close pairs with opposite spin polarization. Thereby the spin polarization of electrons transmitted through the ring can be altered by minor variation of magnetic or electric field at the vicinity of these pairs. Numerical simulations of the two-dimensional open ring show similar results for the BSCs. Encircling the BSC points in the parametric space of the flux and the RSOI constant gives rise to a geometric phase.

  9. Involvement of glnB, glnZ, and glnD genes in the regulation of poly-3-hydroxybutyrate biosynthesis by ammonia in Azospirillum brasilense Sp7.

    PubMed

    Sun, Jun; Van Dommelen, Anne; Van Impe, Jan; Vanderleyden, Jozef

    2002-02-01

    The role of three key nitrogen regulatory genes, glnB (encoding the P(II) protein), glnZ (encoding the P(z) protein), and glnD (encoding the GlnD protein), in regulation of poly-3-hydroxybutyrate (PHB) biosynthesis by ammonia in Azospirillum brasilense Sp7 was investigated. It was observed that glnB glnZ and glnD mutants produce substantially higher amounts of PHB than the wild type produces during the active growth phase. glnB and glnZ mutants have PHB production phenotypes similar to that of the wild type. Our results indicate that the P(II)-P(z) system is apparently involved in nitrogen-dependent regulation of PHB biosynthesis in A. brasilense Sp7.

  10. Dynamical analysis of tRNA Gln-GlnRS complex using normal mode calculation

    NASA Astrophysics Data System (ADS)

    Nakamura, Shugo; Ikeguchi, Mitsunori; Shimizu, Kentaro

    2003-04-01

    We applied normal mode calculation in internal coordinates to a complex of glutamine transfer RNA (tRNA Gln) and glutaminyl-tRNA synthetase (GlnRS). Calculated deviations of atoms agreed well with those obtained from X-ray data. The differences of motions corresponding to low mode frequencies between the free state and the complex state were analyzed. For GlnRS, many motions in the free state were conserved in the complex state, while the dynamics of tRNA Gln was largely affected by the complex formation. Superimposed images of the conserved and non-conserved motions of tRNA Gln clearly indicated the restricted direction of motions in the complex.

  11. Different responses of the GlnB and GlnZ proteins upon in vitro uridylylation by the Azospirillum brasilense GlnD protein.

    PubMed

    Araújo, L M; Huergo, L F; Invitti, A L; Gimenes, C I; Bonatto, A C; Monteiro, R A; Souza, E M; Pedrosa, F O; Chubatsu, L S

    2008-04-01

    Azospirillum brasilense is a diazotroph found in association with important agricultural crops. In this organism, the regulation of nitrogen fixation by ammonium ions involves several proteins including the uridylyltransferase/uridylyl-removing enzyme, GlnD, which reversibly uridylylates the two PII proteins, GlnB and GlnZ, in response to the concentration of ammonium ions. In the present study, the uridylylation/deuridylylation cycle of A. brasilense GlnB and GlnZ proteins by GlnD was reconstituted in vitro using the purified proteins. The uridylylation assay was analyzed using non-denaturing polyacrylamide gel electrophoresis and fluorescent protein detection. Our results show that the purified A. brasilense GlnB and GlnZ proteins were uridylylated by the purified A. brasilense GlnD protein in a process dependent on ATP and 2-oxoglutarate. The dependence on ATP for uridylylation was similar for both proteins. On the other hand, at micromolar concentration of 2-oxoglutarate (up to 100 microM), GlnB uridylylation was almost twice that of GlnZ, an effect that was not observed at higher concentrations of 2-oxoglutarate (up to 10 mM). Glutamine inhibited uridylylation and stimulated deuridylylation of both GlnB and GlnZ. However, glutamine seemed to inhibit GlnZ uridylylation more efficiently. Our results suggest that the differences in the uridylylation pattern of GlnB and GlnZ might be important for fine-tuning of the signaling pathway of cellular nitrogen status in A. brasilense.

  12. Open quantum billiard in a magnetic field: A perfect spin filter

    SciTech Connect

    Isupova, G. G. Malyshev, A. I.

    2015-10-15

    The transport properties of an open system, a circular billiard with attached channels, are studied in the presence of Rashba spin-orbit coupling. The inclusion of even a weak magnetic field in the structure plane is shown to cause the conductance to become dependent on the spin state of charge carriers. By choosing the system’s parameters, this property allows a spin filter based on it to be realized.

  13. The solution of an open XXZ chain with arbitrary spin revisited

    NASA Astrophysics Data System (ADS)

    Murgan, Rajan; Silverthorn, Chris

    2015-02-01

    The Bethe ansatz solutions for an open XXZ spin chain with arbitrary spin with N sites and nondiagonal boundary terms are revisited. The anisotropy parameter, for cases considered here, has values η = iπ \\frac{r}{q} , where r and q are positive integers with q restricted to odd integers. Numerical results are presented to support the solutions.

  14. The open XXZ spin chain model and the topological basis realization

    NASA Astrophysics Data System (ADS)

    Wang, Qingyong; Du, Yangyang; Wu, Chunfeng; Wang, Gangcheng; Sun, Chunfang; Xue, Kang

    2016-07-01

    In this paper, it is shown that the Hamiltonian of the open spin-1 XXZ chain model can be constructed from the generators of the Birman-Murakami-Wenzl (B-M-W) algebra. Without the topological parameter d (describing the unknotted loop ◯ in topology) reducing to a fixed value, the topological basis states can be connected with the open XXZ spin chain. Then some particular properties of the topological basis states in this system have been investigated. We find that the topological basis states are the three eigenstates of a four-spin-1 XXZ chain model without boundary term. Specifically, all the spin single states of the system fall on the topological basis subspace. And the number of the spin single states of the system is equal to that of the topological basis states.

  15. Precise characterization of GlnR Box in actinomycetes.

    PubMed

    Wang, Jin; Wang, Ying; Zhao, Guo-Ping

    2015-03-13

    GlnR has been characterized as a central regulator governing most nitrogen metabolisms in many important actinomycetes. So far, the GlnR binding consensus sequences have been extensively studied, but with different motifs proposed, which has therefore brought confusion and impeded the understanding of the in-depth molecular mechanisms of GlnR-mediated transcriptional regulation. Here, a 30-nt GlnR-protected DNA sequence in the promoter of glnA in Amycolatopsis mediterranei was employed for precise characterization of GlnR binding consensus sequences. Site-by-site mutagenesis strategy combining with the Electrophoretic Mobility Shift Assay were employed, and a 5-nt GlnR Box was precisely defined as the basic unit for GlnR binding. PMID:25684190

  16. Characterization of pII Family (GlnK1, GlnK2, GlnB) Protein Uridylylation in Response to Nitrogen Availability for Rhodopseudomonas palustris

    SciTech Connect

    Connelly, Heather M; Pelletier, Dale A; Lu, Tse-Yuan; Lankford, Patricia K; Hettich, Robert {Bob} L

    2006-01-01

    The GlnK and GlnB proteins are members of the pII signal transduction protein family, which is essential in nitrogen regulation due to this protein family's ability to sense internal cellular ammonium levels and control cellular response. The role of GlnK in nitrogen regulation has been studied in a variety of bacteria but previously has been uncharacterized in the purple nonsulfur anoxygenic phototropic bacterium Rhodopseudomonas palustris. R. palustris has tremendous metabolic versatility in its modes of energy generation and carbon metabolism, and it employs a sensitive nitrogen-ammonium regulation system that may vary from that of other commonly studied bacteria. In R. palustris, there are three annotated forms of pII proteins: GlnK1, GlnK2, and GlnB. Here we describe, for the first time, the characterization of GlnK1, GlnK2, and GlnB modifications as a response to nitrogen availability, thereby providing information about how this bacterium regulates the AmtB ammonium transporter and glutamine synthetase, which controls the rate of glutamate to glutamine conversion. Using a strategy of creating C-terminally tagged GlnK and GlnB proteins followed by tandem affinity purification in combination with top-down mass spectrometry, four isoforms of the GlnK2 and GlnB proteins and two isoforms of the GlnK1 protein were characterized at high resolution and mass accuracy. Wild-type or endogenous expression of all three proteins was also examined under normal ammonium conditions and ammonium starvation to ensure that the tagging and affinity purification methods employed did not alter the natural state of the proteins. All three proteins were found to undergo uridylylation under ammonium starvation conditions, presumably to regulate the AmtB ammonium transporter and glutamine synthetase. Under high-ammonium conditions, the GlnK1, GlnK2, and GlnB proteins are unmodified. This experimental protocol involving high-resolution mass spectrometry measurements of intact proteins

  17. The GlnR Regulon in Streptococcus mutans Is Differentially Regulated by GlnR and PmrA.

    PubMed

    Chen, Yi-Ywan M; Chen, Yueh-Ying; Hung, Jui-Lung; Chen, Pei-Min; Chia, Jean-San

    2016-01-01

    GlnR-mediated repression of the GlnR regulon at acidic pH is required for optimal acid tolerance in Streptococcus mutans, the etiologic agent for dental caries. Unlike most streptococci, the GlnR regulon is also regulated by newly identified PmrA (SMUGS5_RS05810) at the transcriptional level in S. mutans GS5. Results from gel mobility shift assays confirmed that both GlnR and PmrA recognized the putative GlnR box in the promoter regions of the GlnR regulon genes. By using a chemostat culture system, we found that PmrA activated the expression of the GlnR regulon at pH 7, and that this activation was enhanced by excess glucose. Deletion of pmrA (strain ΔPmrA) reduced the survival rate of S. mutans GS5 at pH 3 moderately, whereas the GlnR mutant (strain ΔGlnR) exhibited an acid-sensitive phenotype in the acid killing experiments. Elevated biofilm formation in both ΔGlnR and ΔPmrA mutant strains is likely a result of indirect regulation of the GlnR regulon since GlnR and PmrA regulate the regulon differently. Taken together, it is suggested that activation of the GlnR regulon by PmrA at pH 7 ensures adequate biosynthesis of amino acid precursor, whereas repression by GlnR at acidic pH allows greater ATP generation for acid tolerance. The tight regulation of the GlnR regulon in response to pH provides an advantage for S. mutans to better survive in its primary niche, the oral cavity. PMID:27454482

  18. The GlnR Regulon in Streptococcus mutans Is Differentially Regulated by GlnR and PmrA

    PubMed Central

    Chen, Yi-Ywan M.; Chen, Yueh-Ying; Hung, Jui-Lung; Chen, Pei-Min; Chia, Jean-San

    2016-01-01

    GlnR-mediated repression of the GlnR regulon at acidic pH is required for optimal acid tolerance in Streptococcus mutans, the etiologic agent for dental caries. Unlike most streptococci, the GlnR regulon is also regulated by newly identified PmrA (SMUGS5_RS05810) at the transcriptional level in S. mutans GS5. Results from gel mobility shift assays confirmed that both GlnR and PmrA recognized the putative GlnR box in the promoter regions of the GlnR regulon genes. By using a chemostat culture system, we found that PmrA activated the expression of the GlnR regulon at pH 7, and that this activation was enhanced by excess glucose. Deletion of pmrA (strain ΔPmrA) reduced the survival rate of S. mutans GS5 at pH 3 moderately, whereas the GlnR mutant (strain ΔGlnR) exhibited an acid-sensitive phenotype in the acid killing experiments. Elevated biofilm formation in both ΔGlnR and ΔPmrA mutant strains is likely a result of indirect regulation of the GlnR regulon since GlnR and PmrA regulate the regulon differently. Taken together, it is suggested that activation of the GlnR regulon by PmrA at pH 7 ensures adequate biosynthesis of amino acid precursor, whereas repression by GlnR at acidic pH allows greater ATP generation for acid tolerance. The tight regulation of the GlnR regulon in response to pH provides an advantage for S. mutans to better survive in its primary niche, the oral cavity. PMID:27454482

  19. Creation of localized spins in graphene by ring-opening of epoxy derived hydroxyl.

    PubMed

    Chen, Jie; Zhang, Weili; Sun, Yuanyuan; Zheng, Yongping; Tang, Nujiang; Du, Youwei

    2016-05-26

    Creation of high-density localized spins in the basal plane of graphene sheet by introduction of sp(3)-type defects is considered to be a potential route for the realization of high-magnetization graphene. Theoretical and experimental studies confirmed that hydroxyl can be an effective sp(3)-type candidate for inducing robust magnetic moment. However, the artificial generation of hydroxyl groups for creating high-density spins on the basal plane of graphene sheet is very scarce. Here we demonstrate that high-content hydroxyl groups can be generated on the basal plane of graphene oxide (GO) sheet by ring opening of epoxy groups. We show that by introduction of 10.74 at.% hydroxyl groups, the density of localized spins of GO can be significantly increased from 0.4 to 5.17 μB/1000 C. Thus, this study provided an effective method to obtain graphene with high-density localized spins.

  20. Creation of localized spins in graphene by ring-opening of epoxy derived hydroxyl

    PubMed Central

    Chen, Jie; Zhang, Weili; Sun, Yuanyuan; Zheng, Yongping; Tang, Nujiang; Du, Youwei

    2016-01-01

    Creation of high-density localized spins in the basal plane of graphene sheet by introduction of sp3-type defects is considered to be a potential route for the realization of high-magnetization graphene. Theoretical and experimental studies confirmed that hydroxyl can be an effective sp3-type candidate for inducing robust magnetic moment. However, the artificial generation of hydroxyl groups for creating high-density spins on the basal plane of graphene sheet is very scarce. Here we demonstrate that high-content hydroxyl groups can be generated on the basal plane of graphene oxide (GO) sheet by ring opening of epoxy groups. We show that by introduction of 10.74 at.% hydroxyl groups, the density of localized spins of GO can be significantly increased from 0.4 to 5.17 μB/1000 C. Thus, this study provided an effective method to obtain graphene with high-density localized spins. PMID:27225991

  1. Graphene-diamond interface: Gap opening and electronic spin injection

    NASA Astrophysics Data System (ADS)

    Ma, Yandong; Dai, Ying; Guo, Meng; Huang, Baibiao

    2012-06-01

    Creating a finite band gap, injecting electronic spin, and finding a suitable substrate are the three important challenges for building graphene-based devices. Here, first-principles calculations are performed to investigate the electronic and magnetic properties of graphene adsorbed on the (111) surface of diamond, which is synthesized experimentally [Nature10.1038/nature09979 472, 74 (2011); J. Appl. Phys.10.1063/1.3627370 110, 044324 (2011); Nano Lett.10.1021/nl204545q 12, 1603 (2012); ACS Nano10.1021/nn204362p 6, 1018 (2012)]. Our results reveal that the graphene adsorbed on the diamond surface is a semiconductor with a finite gap depending on the adsorption arrangements due to the variation of on-site energy induced by the diamond surface, with the extra advantage of maintaining main characters of the linear band dispersion of graphene. More interestingly, different from typical graphene/semiconductor hybrid systems, we find that electronic spin can arise ``intrinsically'' in graphene owing to the exchange proximity interaction between electrons in graphene and localized electrons in the diamond surface rather than the characteristic graphene states. These predications strongly revive this new synthesized system as a viable candidate to overcome all the aforementioned challenges, providing an ideal platform for future graphene-based electronics.

  2. Integrable open spin-chains in AdS3 /CFT2 correspondences

    NASA Astrophysics Data System (ADS)

    Prinsloo, Andrea; Regelskis, Vidas; Torrielli, Alessandro

    2015-11-01

    We study integrable open boundary conditions for d (2 ,1 ;α )2 and p s u (1 ,1 |2 )2 spin-chains. Magnon excitations of these open spin-chains are mapped to massive excitations of type-IIB open superstrings ending on D-branes in the AdS3×S3×S3×S1 and AdS3×S3×T4 supergravity geometries with pure R-R flux. We derive reflection matrix solutions of the boundary Yang-Baxter equation which intertwine representations of a variety of boundary coideal subalgebras of the bulk Hopf superalgebra. Many of these integrable boundaries are matched to D1- and D5-brane maximal giant gravitons.

  3. Self-similar spectral structures and edge-locking hierarchy in open-boundary spin chains

    SciTech Connect

    Haque, Masudul

    2010-07-15

    For an anisotropic Heisenberg (XXZ) spin chain, we show that an open boundary induces a series of approximately self-similar features at different energy scales, high up in the eigenvalue spectrum. We present a nonequilibrium phenomenon related to this fractal structure, involving states in which a connected block near the edge is polarized oppositely to the rest of the chain. We show that such oppositely polarized blocks can be 'locked' to the edge of the spin chain and that there is a hierarchy of edge-locking effects at various orders of the anisotropy. The phenomenon enables dramatic control of quantum-state transmission and magnetization control.

  4. Integrable open spin chain in super Yang-Mills and the plane-wave/SYM duality

    NASA Astrophysics Data System (ADS)

    Chen, Bin; Wang, Xiao-Jun; Wu, Yong-Shi

    2004-02-01

    We investigate the integrable structures in an Script N = 2 superconformal Sp(N) Yang-Mills theory with matter, which is dual to an open+closed string system. We restrict ourselves to the BMN operators that correspond to free string states. In the closed string sector, an integrable structure is inherited from its parent theory, Script N = 4 SYM. For the open string sector, the planar one-loop mixing matrix for gauge invariant holomorphic scalar operators is identified with the hamiltonian of an integrable SU(3) open spin chain. Using the K-matrix formalism we identify the integrable open-chain boundary conditions that correspond to string boundary conditions. The solutions to the algebraic Bethe ansatz equations (ABAE) with a few impurities are shown to recover the anomalous dimensions that exactly match the spectrum of free open string in the plane-wave background. We also discuss the properties of the solutions of ABAE beyond the BMN regime.

  5. Recurrence relations of higher spin BPST vertex operators for open strings

    NASA Astrophysics Data System (ADS)

    Fu, Chih-Hao; Lee, Jen-Chi; Tan, Chung-I.; Yang, Yi

    2013-08-01

    We calculate higher-spin Brower-Polchinski-Strassler-Tan (BPST) vertex operators for an open bosonic string and express these operators in terms of a Kummer function of the second kind. We derive an infinite number of recurrence relations among BPST vertex operators of different string states. These recurrence relations among BPST vertex operators lead to the recurrence relations among Regge string scattering amplitudes discovered recently.

  6. Torque Enhancement, Spin Equilibrium, and Jet Power from Disk-Induced Opening of Pulsar Magnetic Fields

    NASA Astrophysics Data System (ADS)

    Parfrey, Kyle; Spitkovsky, Anatoly; Beloborodov, Andrei M.

    2016-05-01

    The interaction of a rotating star’s magnetic field with a surrounding plasma disk lies at the heart of many questions posed by neutron stars in X-ray binaries. We consider the opening of stellar magnetic flux due to differential rotation along field lines coupling the star and disk, using a simple model for the disk-opened flux, the torques exerted on the star by the magnetosphere, and the power extracted by the electromagnetic wind. We examine the conditions under which the system enters an equilibrium spin state, in which the accretion torque is instantaneously balanced by the pulsar wind torque alone. For magnetic moments, spin frequencies, and accretion rates relevant to accreting millisecond pulsars, the spin-down torque from this enhanced pulsar wind can be substantially larger than that predicted by existing models of the disk-magnetosphere interaction, and is in principle capable of maintaining spin equilibrium at frequencies less than 1 kHz. We speculate that this mechanism may account for the non-detection of frequency increases during outbursts of SAX J1808.4-3658 and XTE J1814-338, and may be generally responsible for preventing spin-up to sub-millisecond periods. If the pulsar wind is collimated by the surrounding environment, the resulting jet can satisfy the power requirements of the highly relativistic outflows from Cir X-1 and Sco X-1. In this framework, the jet power scales relatively weakly with accretion rate, {L}{{j}}\\propto {\\dot{M}}4/7, and would be suppressed at high accretion rates only if the stellar magnetic moment is sufficiently low.

  7. Torque Enhancement, Spin Equilibrium, and Jet Power from Disk-Induced Opening of Pulsar Magnetic Fields

    NASA Astrophysics Data System (ADS)

    Parfrey, Kyle; Spitkovsky, Anatoly; Beloborodov, Andrei M.

    2016-05-01

    The interaction of a rotating star’s magnetic field with a surrounding plasma disk lies at the heart of many questions posed by neutron stars in X-ray binaries. We consider the opening of stellar magnetic flux due to differential rotation along field lines coupling the star and disk, using a simple model for the disk-opened flux, the torques exerted on the star by the magnetosphere, and the power extracted by the electromagnetic wind. We examine the conditions under which the system enters an equilibrium spin state, in which the accretion torque is instantaneously balanced by the pulsar wind torque alone. For magnetic moments, spin frequencies, and accretion rates relevant to accreting millisecond pulsars, the spin-down torque from this enhanced pulsar wind can be substantially larger than that predicted by existing models of the disk–magnetosphere interaction, and is in principle capable of maintaining spin equilibrium at frequencies less than 1 kHz. We speculate that this mechanism may account for the non-detection of frequency increases during outbursts of SAX J1808.4-3658 and XTE J1814-338, and may be generally responsible for preventing spin-up to sub-millisecond periods. If the pulsar wind is collimated by the surrounding environment, the resulting jet can satisfy the power requirements of the highly relativistic outflows from Cir X-1 and Sco X-1. In this framework, the jet power scales relatively weakly with accretion rate, {L}{{j}}\\propto {\\dot{M}}4/7, and would be suppressed at high accretion rates only if the stellar magnetic moment is sufficiently low.

  8. [The different functions of glnB and glnZ from Azospirillum brasilense YU62 in the control of nitrogen fixation].

    PubMed

    Chen, S; Guan, Y; Ying, J; Li, Z; Wang, J; Li, J

    2001-10-01

    The glnB and glnZ genes of A. brasilense have 70% homology at nucleotide sequence. glnB is located in a 3.7 kb Eco RI+ PstI fragment and glnZ is located in a 3.7 kb SalI fragment. Both glnB and glnZ genes were mutagenized by Kmr cassette insertions and glnB- and glnZ- mutants were obtained. glnB- mutant did not have any nitrogenase activity, while glnZ- mutant still has nitrogenase activity. The coding regions of glnB and glnZ were cloned into pVK100 vectors and recombinant plasmids pVK-II and pVK-Z were obtained, respectively. The recombinant plasmids pVK-II and pVK-Z were introduced into glnB- and glnZ- to produce C-glnB and C-glnZ, respectively. C-glnB can restore nitrogenase activity and C-glnZ does not have effect on nitrogenase activity. When pVK-II and pVK-Z were introduced into A. brasilense Yu62 and draT-, respectively, the Yu62-II (containing pVK-II) and draT-II (containing pVK-II) have higher nitrogenase activity than that of wild type Yu62. In contrast, Yu62-Z (containing pVK-Z) and draT-Z (containing pVK-Z) has no effect on nitrogenase activity. The nifA(-)-II (containg pVK-II) and nifA(-)-Z (containing pVK-Z) still have no nitrogenase activity.

  9. Trigluon correlations and single transverse spin asymmetry in open charm production

    SciTech Connect

    Kang Zhongbo; Qiu Jianwei

    2009-08-04

    We study the single transverse-spin asymmetry for open charm production in the semiinclusive lepton-hadron deep inelastic scattering (SIDIS) and pp collision. Within collinear factorization approach, we find that the asymmetry is sensitive to the twist-3 trigluon correlation functions in the proton. With a simple model for the trigluon correlation functions, we estimate the asymmetry in SIDIS for both COMPASS and eRHIC kinematics, as well as in pp collision at RHIC energy. We discuss the possibilities of extracting the trigluon correlation functions in these experiments.

  10. Communication: Spin densities within a unitary group based spin-adapted open-shell coupled-cluster theory: Analytic evaluation of isotropic hyperfine-coupling constants for the combinatoric open-shell coupled-cluster scheme

    SciTech Connect

    Datta, Dipayan Gauss, Jürgen

    2015-07-07

    We report analytical calculations of isotropic hyperfine-coupling constants in radicals using a spin-adapted open-shell coupled-cluster theory, namely, the unitary group based combinatoric open-shell coupled-cluster (COSCC) approach within the singles and doubles approximation. A scheme for the evaluation of the one-particle spin-density matrix required in these calculations is outlined within the spin-free formulation of the COSCC approach. In this scheme, the one-particle spin-density matrix for an open-shell state with spin S and M{sub S} = + S is expressed in terms of the one- and two-particle spin-free (charge) density matrices obtained from the Lagrangian formulation that is used for calculating the analytic first derivatives of the energy. Benchmark calculations are presented for NO, NCO, CH{sub 2}CN, and two conjugated π-radicals, viz., allyl and 1-pyrrolyl in order to demonstrate the performance of the proposed scheme.

  11. Spin-orbit-path hybrid Greenberger-Horne-Zeilinger entanglement and open-destination teleportation with multiple degrees of freedom

    SciTech Connect

    Chen Lixiang; She Weilong

    2011-03-15

    We propose a scheme to generate hybrid Greenberger-Horne-Zeilinger (GHZ) entanglement where multiple photons are entangled in different degrees of freedom of spin, orbital angular momentum (OAM), and path (linear momentum). The generation involves mapping the preliminary OAM entanglement of photon pairs onto their spin-orbit and spin-path degrees of freedom, respectively. Based on the hybrid GHZ entanglement, we demonstrate an open-destination teleportation with multiples degrees of freedom, via which a spin state of a single photon is teleported onto a superposition of multiple photons with the postselection technique and the original information could be read out at any photon in individual spin, OAM, or the linear-momentum state. Our scheme holds promise for asymmetric optical quantum network.

  12. An inhomogeneous T-Q equation for the open XXX chain with general boundary terms: completeness and arbitrary spin

    NASA Astrophysics Data System (ADS)

    Nepomechie, Rafael I.

    2013-11-01

    An inhomogeneous T-Q equation has recently been proposed by Cao, Yang, Shi and Wang for the open spin-1/2 XXX chain with general (nondiagonal) boundary terms. We argue that a simplified version of this equation describes all the eigenvalues of the transfer matrix of this model. We also propose a generating function for the inhomogeneous T-Q equations of arbitrary spin.

  13. Structures of Arg- and Gln-type bacterial cysteine dioxygenase homologs: Arg- and Gln-type Bacterial CDO Homologs

    SciTech Connect

    Driggers, Camden M.; Hartman, Steven J.; Karplus, P. Andrew

    2015-01-01

    In some bacteria, cysteine is converted to cysteine sulfinic acid by cysteine dioxygenases (CDO) that are only ~15–30% identical in sequence to mammalian CDOs. Among bacterial proteins having this range of sequence similarity to mammalian CDO are some that conserve an active site Arg residue (“Arg-type” enzymes) and some having a Gln substituted for this Arg (“Gln-type” enzymes). Here, we describe a structure from each of these enzyme types by analyzing structures originally solved by structural genomics groups but not published: a Bacillus subtilis “Arg-type” enzyme that has cysteine dioxygenase activity (BsCDO), and a Ralstonia eutropha “Gln-type” CDO homolog of uncharacterized activity (ReCDOhom). The BsCDO active site is well conserved with mammalian CDO, and a cysteine complex captured in the active site confirms that the cysteine binding mode is also similar. The ReCDOhom structure reveals a new active site Arg residue that is hydrogen bonding to an iron-bound diatomic molecule we have interpreted as dioxygen. Notably, the Arg position is not compatible with the mode of Cys binding seen in both rat CDO and BsCDO. As sequence alignments show that this newly discovered active site Arg is well conserved among “Gln-type” CDO enzymes, we conclude that the “Gln-type” CDO homologs are not authentic CDOs but will have substrate specificity more similar to 3-mercaptopropionate dioxygenases.

  14. Structures of Arg- and Gln-type bacterial cysteine dioxygenase homologs: Arg- and Gln-type Bacterial CDO Homologs

    DOE PAGESBeta

    Driggers, Camden M.; Hartman, Steven J.; Karplus, P. Andrew

    2015-01-01

    In some bacteria, cysteine is converted to cysteine sulfinic acid by cysteine dioxygenases (CDO) that are only ~15–30% identical in sequence to mammalian CDOs. Among bacterial proteins having this range of sequence similarity to mammalian CDO are some that conserve an active site Arg residue (“Arg-type” enzymes) and some having a Gln substituted for this Arg (“Gln-type” enzymes). Here, we describe a structure from each of these enzyme types by analyzing structures originally solved by structural genomics groups but not published: a Bacillus subtilis “Arg-type” enzyme that has cysteine dioxygenase activity (BsCDO), and a Ralstonia eutropha “Gln-type” CDO homolog ofmore » uncharacterized activity (ReCDOhom). The BsCDO active site is well conserved with mammalian CDO, and a cysteine complex captured in the active site confirms that the cysteine binding mode is also similar. The ReCDOhom structure reveals a new active site Arg residue that is hydrogen bonding to an iron-bound diatomic molecule we have interpreted as dioxygen. Notably, the Arg position is not compatible with the mode of Cys binding seen in both rat CDO and BsCDO. As sequence alignments show that this newly discovered active site Arg is well conserved among “Gln-type” CDO enzymes, we conclude that the “Gln-type” CDO homologs are not authentic CDOs but will have substrate specificity more similar to 3-mercaptopropionate dioxygenases.« less

  15. Cloning and characterisation of the Azospirillum brasilense glnD gene and analysis of a glnD mutant.

    PubMed

    Van Dommelen, A; Keijers, V; Somers, E; Vanderleyden, J

    2002-01-01

    Nitrogen regulation in bacteria involves the capacity to sense the availability of fixed nitrogen and to translate a signal indicating nitrogen deficiency or nitrogen excess into a cellular response. One of the key enzymes in this complex regulation process, the uridylyltransferase/uridylyl-removing (UTase) enzyme, encoded by the glnD gene, was characterised in the diazotroph Azospirillum brasilense, which promotes plant growth. The glnD gene product is responsible for the uridylylation of both P(II)-like nitrogen regulatory proteins, P(II) and P(Z), depending on the nitrogen status of the cell. The nitrogen-regulated activity of the main ammonium-assimilating enzyme, glutamine synthetase, is not altered in a glnD-Tn 5-B30 insertion mutant. UTase influences processes that are regulated by the NtrB-NtrC two-component histidine protein kinase system, such as ammonium uptake and nitrate assimilation. Moreover, the glnD gene product is indispensable for the activation of nitrogen fixation. Transcription of glnD is up-regulated under nitrogen-fixing conditions. This regulation is only partially dependent on the global nitrogen regulation (Ntr) system.

  16. GlnB is specifically required for Azospirillum brasilense NifA activity in Escherichia coli.

    PubMed

    Araújo, Luiza M; Monteiro, Rose A; Souza, Emanuel M; Steffens, M Berenice R; Rigo, Liu U; Pedrosa, Fábio O; Chubatsu, Leda S

    2004-01-01

    The Azospirillum brasilense transcription regulator NifA and the nitrogen-status signaling proteins GlnB, GlnZ and GlnK were expressed in Escherichia coli and analyzed for their ability to activate nif gene expression. When expressed separately, none of the proteins were able to activate nifH promoter expression in any tested conditions; in contrast, nifH expression was observed in cells grown in the absence of ammonium and oxygen and when expressing simultaneously NifA and GlnB proteins, but not when expressing NifA and GlnZ or GlnK. Our results show that the GlnB protein is required for transcription activation by Azospirillum brasilense NifA and it cannot be replaced by GlnZ or GlnK.

  17. [Cloning and functional analysis of glnB from Azospirillum brasilense Yu62].

    PubMed

    Li, Z H; Chen, S F; Li, J L

    2001-01-01

    The glnB gene of A. brasilense Yu62 was determined in a 3.7 kb EcoRI + PstI fragment. The glnA is located downstream of glnB and an ORF for hypothetical protein is on upstream of glnB. The deduced amino acid sequence of PII encoded by glnB is 71%, 77%, 79% and 69% identical to that of K. pneumoniae, Bradyrhizobium japonicum, Rhizobium leguninosarum and E. coli, respectively. A Km-casette was inserted into BglII site of glnB coding region and GlnB- mutant was obtained by homologous recombination. The GlnB- mutant has lost the nitrogenase activity, i.e.: Nif-. For the functional confirmation of glnB gene, a complementary test was carried out and it was shown that C-glnB(glnB::Km/glnB) can restore the nitrogenase activity. When the recombinant plasmid pVK-II which containined the coding region of glnB was introduced into A. brasilense Yu62 and A. brasilense Yu62 DraT-, respectively, the Yu62-II (containing pVK-II) and draT-II(containing pVK-II) showed higher nitrogenase activity than wild type. These results confirmed that glnB plays an important role in the regulation of nitrogen in A. brasilense.

  18. Mutational analysis of GlnB residues critical for NifA activation in Azospirillum brasilense.

    PubMed

    Inaba, Juliana; Thornton, Jeremy; Huergo, Luciano Fernandes; Monteiro, Rose Adele; Klassen, Giseli; Pedrosa, Fábio de Oliveira; Merrick, Mike; de Souza, Emanuel Maltempi

    2015-02-01

    PII proteins are signal transduction that sense cellular nitrogen status and relay this signals to other targets. Azospirillum brasilense is a nitrogen fixing bacterium, which associates with grasses and cereals promoting beneficial effects on plant growth and crop yields. A. brasilense contains two PII encoding genes, named glnB and glnZ. In this paper, glnB was mutagenised in order to identify amino acid residues involved in GlnB signaling. Two variants were obtained by random mutagenesis, GlnBL13P and GlnBV100A and a site directed mutant, GlnBY51F, was obtained. Their ability to complement nitrogenase activity of glnB mutant strains of A. brasilense were determined. The variant proteins were also overexpressed in Escherichia coli, purified and characterized biochemically. None of the GlnB variant forms was able to restore nitrogenase activity in glnB mutant strains of A. brasilense LFH3 and 7628. The purified GlnBY51F and GlnBL13P proteins could not be uridylylated by GlnD, whereas GlnBV100A was uridylylated but at only 20% of the rate for wild type GlnB. Biochemical and computational analyses suggest that residue Leu13, located in the α helix 1 of GlnB, is important to maintain GlnB trimeric structure and function. The substitution V100A led to a lower affinity for ATP binding. Together the results suggest that NifA activation requires uridylylated GlnB bound to ATP.

  19. Small deformations of supersymmetric Wilson loops and open spin-chains

    NASA Astrophysics Data System (ADS)

    Drukker, Nadav; Kawamoto, Shoichi

    2006-07-01

    We study insertions of composite operators into Wilson loops in Script N = 4 supersymmetric Yang-Mills theory in four dimensions. The loops follow a circular or straight path and the composite insertions transform in the adjoint representation of the gauge group. This provides a gauge invariant way to define the correlator of non-singlet operators. Since the basic loop preserves an SL(2,Bbb R) subgroup of the conformal group, we can assign a conformal dimension to those insertions and calculate the corrections to the classical dimension in perturbation theory. The calculation turns out to be very similar to that of single-trace local operators and may also be expressed in terms of a spin-chain. In this case the spin-chain is open and at one-loop order has Neumann boundary conditions on the type of scalar insertions that we consider. This system is integrable and we write the Bethe ansatz describing it. We compare the spectrum in the limit of large angular momentum both in the dilute gas approximation and the thermodynamic limit to the relevant string solution in the BMN limit and in the full AdS5 × S5 metric and find agreement.

  20. Role of open boundary conditions on the hysteretic behaviour of one-dimensional spin crossover nanoparticles

    SciTech Connect

    Chiruta, Daniel; Linares, Jorge E-mail: miya@spin.phys.s.u-tokyo.ac.jp; Boukheddaden, Kamel; Miyashita, Seiji E-mail: miya@spin.phys.s.u-tokyo.ac.jp

    2014-05-21

    In order to explain clearly the role of the open boundary conditions (OBCs) on phase transition in one dimensional system, we consider an Ising model with both short-range (J) and long-range (G) interactions, which has allowed us to study the cooperative nature of spin-crossover (SCO) materials at the nanometer scale. At this end, we developed a transfer-matrix method for one-dimensional (1D) SCO system with free boundary conditions, and we give numerical evidences for how the thermal spin transition curves vary as a function of the physical parameters (J, G) or an applied pressure. Moreover for OBCs case, we have derived the bulk, surface and finite-size contributions to the free energy and we have investigated the variation of these energies as function of J and system size. We have found that the surface free energy behaves like J〈σ〉{sup 2}, where 〈σ〉 is the average magnetization per site. Since the properties of the nanometric scale are dramatically influenced by the system's size (N), our analytical outcomes for the size dependence represent a step to achieve new characteristic of the future devices and also a way to find various novel properties which are absent in the bulk materials.

  1. Modeling structural transitions from the periplasmic-open state of lactose permease and interpretations of spin label experiments.

    PubMed

    Zhuang, Xiaohong; Klauda, Jeffery B

    2016-07-01

    Lactose permease of E. coli (LacY) is a secondary active transporter (SAT) that belongs to the major facilitator superfamily (MFS). Experimental structures of the cytoplasmic-open and more recently occluded-like structure have been determined, however, the crystal structure of LacY in the periplasmic-open state is still not available. The periplasmic-open LacY structure is important for understanding complete proton/sugar transport process of LacY as well as other similar SAT proteins. Previously, a structural model of periplasmic-open LacY has been obtained through a two-step hybrid implicit-explicit (IM-EX) simulation method (JMB404: 506). Molecular dynamics simulations are performed to further test the IM-EX model for the periplasmic-open LacY with ββ-(Galp)2 in a lipid membrane. The comparison of the calculated pore radii to the data of the crystal structure indicates that the IM-EX model of LacY remains periplasmic-open in E269-protonated states. The neighbor residue distance change based on Cα are very similar in simulation results, but they are significantly different in double electron-electron resonance (DEER) experimental data, which motivates us to perform the molecular dynamics dummy spin-label (MDDS) simulations to test the effect of spin labels (size and internal flexibility) on DEER spin label distance measurements. The MDDS simulation results show that the orientation and movement of the spin labels significantly affect the residue pair distance measurement. DEER data alone may not provide an accurate guide for predicting protein structures. MDDS simulations can be applied to analyze the distance distribution due to spin labels and also aid in proper interpretation of DEER experimental data. PMID:27107553

  2. Expression of glnA in Escherichia coli is regulated at tandem promoters.

    PubMed Central

    Reitzer, L J; Magasanik, B

    1985-01-01

    We have determined that the glnA gene of the complex glnALG operon of Escherichia coli is transcribed from tandem promoters. Expression from the upstream promoter, glnAp1, requires the catabolite activating protein, is repressed by nitrogen regulator I (NRI), the product of glnG, and produces a transcript with an untranslated leader of 187 nucleotides. Expression from the downstream promoter, glnAp2, requires NRI as well as the glnF product; full expression also requires growth in a nitrogen-limited environment. The downstream transcript has an untranslated leader of 73 nucleotides. We also provide evidence that the function of the glnL product is to mediate the interconversion of NRI between a form capable of activating glnAp2 and an inactive form in response to changes in the intracellular concentration of ammonia. The function of the two minor promoters of the glnALG operon, glnAp1 and glnLp, is to maintain the products of glnA, glutamine synthetase, an essential enzyme, and of glnG, NRI, an activator of nitrogen-controlled genes, during carbon-limited growth. Images PMID:2858855

  3. Probing the holographic principle using dynamical gauge effects from open spin-orbit coupling

    NASA Astrophysics Data System (ADS)

    Zhao, Jianshi; Price, Craig; Liu, Qi; Gemelke, Nathan

    2016-05-01

    Dynamical gauge fields result from locally defined symmetries and an effective over-labeling of quantum states. Coupling atoms weakly to a reservoir of laser modes can create an effective dynamical gauge field purely due to the disregard of information in the optical states. Here we report measurements revealing effects of open spin-orbit coupling in a system where an effective model can be formed from a non-abelian SU(2) × U(1) field theory following the Yang-Mills construct. Forming a close analogy to dynamical gauge effects in quantum chromodynamics, we extract a measure of atomic motion which reveals the analog of a closing mass gap for the relevant gauge boson, shedding insight on long standing open problems in gauge-fixing scale anomalies. Using arguments following the holographic principle, we measure scaling relations which can be understood by quantifying information present in the local potential. New prospects using these techniques for developing fractionalization of multi-particle and macroscopic systems using dissipative and non-abelian gauge fields will also be discussed. We acknowledge support from NSF Award No. 1068570, and the Charles E. Kaufman Foundation.

  4. A meta-analysis of XPD/ERCC2 Lys751Gln polymorphism and melanoma susceptibility

    PubMed Central

    Sun, Yalin; Zhang, Hao; Ying, Haifeng; Jiang, Wencheng; Chen, Qiwen

    2015-01-01

    We performed a comprehensive meta-analysis to determine the association between XPD/ERCC2 Lys751Gln polymorphism and melanoma susceptibility. Based on comprehensive searches of the MEDLINE, EMBASE and ISI Web of knowledge, China National Knowledge Infrastructure (CNKI) and Wanfang Database, we identified eligible studies about the association between XPD/ERCC2 Lys751Gln polymorphism and melanoma risk. A total of 5,961 cases and 8,669 controls in studies were included in this meta-analysis. All studies were conducted in Caucasian populations. Allele model (Lys vs. Gln: P = 0.53; OR = 0.98, 95% CI = 0.91-1.05), and homozygous model (Lys/ Lys vs. Gln/Gln: P = 0.32; OR = 0.93, 95% CI = 0.81 to 1.07) did not show increased risk of developing melanoma. Similarly, dominant model (Lys/ Lys+Lys/Gln vs. Gln/Gln: P = 0.18; OR = 0.93, 95% CI = 0.83 to 1.03) and recessive model (Lys/ Lys vs. Lys/Gln+Gln/Gln: P = 0.73; OR = 0.98, 95% CI = 0.88 to 1.09) failed to show increased risk of developing melanoma. Our pooled data suggest that there was no evidence for a major role of XPD/ERCC2 Lys751Gln polymorphism in the pathogenesis of melanoma among Caucasian populations. PMID:26550341

  5. Glutamine synthetase-constitutive mutation affecting the glnALG upstream promoter of Escherichia coli.

    PubMed Central

    León, P; Romero, D; Garciarrubio, A; Bastarrachea, F; Covarrubias, A A

    1985-01-01

    The spontaneous gln-76 mutation of Escherichia coli (Osorio et al., Mol. Gen. Genet. 194:114-123, 1984) was previously shown to be responsible for the cis-dominant constitutive expression of the glnA gene in the absence of a glnG-glnF activator system. Nucleotide sequence analysis has now revealed that gln-76 is a single transversion T.A to A.T, an up-promoter mutation affecting the -10 region of glnAp1, the upstream promoter of the glnALG control region. Both, wild-type and gln-76 DNA control regions were cloned into the promoter-probe plasmid pKO1. Galactokinase activity determinations of cells carrying the fused plasmids showed 10-fold more effective expression mediated by gln-76 than by the glnA wild-type control region. Primer extension experiments with RNA from strains carrying the gln-76 control region indicated that the transcription initiation sites were the same in both the gln-76 mutant and the wild type. Images PMID:2866175

  6. Local conservation laws in spin-\\frac{1}{2} XY chains with open boundary conditions

    NASA Astrophysics Data System (ADS)

    Fagotti, Maurizio

    2016-06-01

    We revisit the conserved quantities of the spin-\\frac{1}{2} XY model with open boundary conditions. In the absence of a transverse field, we find new families of local charges and show that half of the seeming conservation laws are conserved only if the number of sites is odd. In even chains the set of noninteracting charges is abelian, like in the periodic case when the number of sites is odd. In odd chains the set is doubled and becomes non-abelian, like in even periodic chains. The dependence of the charges on the parity of the chain’s size undermines the common belief that the thermodynamic limit of diagonal ensembles exists. We consider also the transverse-field Ising chain, where the situation is more ordinary. The generalization to the XY model in a transverse field is not straightforward and we propose a general framework to carry out similar calculations. We conjecture the form of the bulk part of the local charges and discuss the emergence of quasilocal conserved quantities. We provide evidence that in a region of the parameter space there is a reduction of the number of quasilocal conservation laws invariant under chain inversion. As a by-product, we study a class of block-Toeplitz-plus-Hankel operators and identify the conditions that their symbols satisfy in order to commute with a given block-Toeplitz.

  7. Competition between the GlnR and PhoP regulators for the glnA and amtB promoters in Streptomyces coelicolor

    PubMed Central

    Sola-Landa, Alberto; Rodríguez-García, Antonio; Amin, Rafat; Wohlleben, Wolfgang; Martín, Juan F.

    2013-01-01

    Interaction of regulatory networks is a subject of great interest in systems biology of bacteria. Phosphate control of metabolism in Streptomyces is mediated by the two-component system PhoR–PhoP. Similarly, the utilization of different nitrogen sources is controlled by the regulator GlnR. Transcriptomic and biochemical analysis revealed that glnA (encoding a glutamine synthetase), glnR and other nitrogen metabolism genes are under PhoP control. DNA-binding experiments showed that PhoP binds to other nitrogen-regulated genes (SCO0255, SCO01863 and ureA). Using the glnA promoter as model, we observed that PhoP and GlnR compete for binding to the same promoter region, showing GlnR a higher affinity. Using a total of 14 GlnR-binding sites (50 direct repeat units) we established two information-based models that describe the GlnR box as consisting of two 11-nt direct repeats each with clear differences to PHO box. DNA-binding studies with different mutant sequences of glnA promoter revealed that the sequence recognized by GlnR is found in the coding strand whereas that recognized by PhoP is overlapping in the non-coding strand. In amtB promoter PhoP and GlnR boxes are not totally overlapping and both proteins bind simultaneously. PhoP control of nitrogen metabolism genes helps to balance the cellular P/N equilibrium. PMID:23248009

  8. Conformational dynamics in substrate-binding domains influences transport in the ABC importer GlnPQ.

    PubMed

    Gouridis, Giorgos; Schuurman-Wolters, Gea K; Ploetz, Evelyn; Husada, Florence; Vietrov, Ruslan; de Boer, Marijn; Cordes, Thorben; Poolman, Bert

    2015-01-01

    The conformational dynamics in ABC transporters is largely elusive. The ABC importer GlnPQ from Lactococcus lactis has different covalently linked substrate-binding domains (SBDs), thus making it an excellent model system to elucidate the dynamics and role of the SBDs in transport. We demonstrate by single-molecule spectroscopy that the two SBDs intrinsically transit from open to closed ligand-free conformation, and the proteins capture their amino acid ligands via an induced-fit mechanism. High-affinity ligands elicit transitions without changing the closed-state lifetime, whereas low-affinity ligands dramatically shorten it. We show that SBDs in the closed state compete for docking onto the translocator, but remarkably the effect is strongest without ligand. We find that the rate-determining steps depend on the SBD and the amino acid transported. We conclude that the lifetime of the closed conformation controls both SBD docking to the translocator and substrate release.

  9. Open spin chains with generic integrable boundaries: Baxter equation and Bethe ansatz completeness from separation of variables

    NASA Astrophysics Data System (ADS)

    Kitanine, N.; Maillet, J. M.; Niccoli, G.

    2014-05-01

    We solve the longstanding problem of defining a functional characterization of the spectrum of the transfer matrix associated with the most general spin-1/2 representations of the six-vertex reflection algebra for general inhomogeneous chains. The corresponding homogeneous limit reproduces the spectrum of the Hamiltonian of the spin-1/2 open XXZ and XXX quantum chains with the most general integrable boundaries. The spectrum is characterized by a second order finite difference functional equation of Baxter type with an inhomogeneous term which vanishes only for some special but yet interesting non-diagonal boundary conditions. This functional equation is shown to be equivalent to the known separation of variables (SOV) representation, hence proving that it defines a complete characterization of the transfer matrix spectrum. The polynomial form of the Q-function allows us to show that a finite system of generalized Bethe equations can also be used to describe the complete transfer matrix spectrum.

  10. XPC Lys939Gln polymorphism, smoking and risk of sporadic colorectal cancer among Malaysians

    PubMed Central

    Ahmad Aizat, Abdul Aziz; Siti Nurfatimah, Mohd Shahpudin; Aminudin, Mustapha Mohd; Ankathil, Ravindran

    2013-01-01

    AIM: To investigate the risk association of xeroderma pigmentosum group C (XPC) Lys939Gln polymorphism alone and in combination with cigarette smoking on colorectal cancer (CRC) predisposition. METHODS: Peripheral blood samples of 510 study subjects (255 CRC patients, 255 controls)were collected. DNA was extracted and genotyping was performed using polymerase chain reaction-restriction fragment length polymorphism. The association between polymorphic genotype and CRC predisposition was determined using the OR and 95%CI. RESULTS: The frequency of the homozygous variant (Gln/Gln) genotype was significantly higher in cases compared with controls (16.0% vs 10.2%, P = 0.049). The Gln/Gln genotype of XPC showed a significantly higher association with the risk of CRC (OR = 1.884; 95%CI: 1.082-3.277; P = 0.025). In the case of allele frequencies, variant allele C was associated with a significantly increased risk of CRC (OR = 1.375; 95%CI: 1.050-1.802; P = 0.020). Moreover, the risk was markedly higher for those who were carriers of the Gln/Gln variant genotype and were also cigarette smokers (OR = 3.409; 95%CI: 1.061-10.949; P = 0.032). CONCLUSION: The XPC Gln/Gln genotype alone and in combination with smoking increases the risk of CRC among Malaysians. PMID:23801864

  11. Regulation of glnB gene promoter expression in Azospirillum brasilense by the NtrC protein.

    PubMed

    Huergo, Luciano F; Souza, Emanuel M; Steffens, M Berenice R; Yates, M Geoffrey; Pedrosa, Fabio O; Chubatsu, Leda S

    2003-06-01

    In Azospirillum brasilense the glnB and glnA genes are clustered in an operon regulated by three different promoters: two located upstream of glnB (glnBp1-sigma(70), and glnBp2-sigma(N)) and one as yet unidentified promoter, in the glnBA intergenic region. We have investigated the expression of the glnB gene promoter using glnB-lacZ gene fusions, mutation analysis, heterologous expression and DNA band-shift assays. Deletion of the glnB promoter region showed that NtrC-binding sequences were essential for glnB expression under nitrogen limitation. The A. brasilense NtrC protein activated transcription of glnB-lacZ fusions in the heterologous genetic background of Escherichia coli. Expression of glnB-lacZ fusions in two A. brasilense ntrC mutants differed from that in the wild-type strain. In vitro studies also indicated that the purified NtrC protein from E. coli was able to bind to the glnB promoter region of A. brasilense. Our results show that the NtrC protein activates glnBglnA expression under nitrogen limitation in A. brasilense.

  12. Open XXZ spin chain: nonequilibrium steady state and a strict bound on ballistic transport.

    PubMed

    Prosen, Tomaž

    2011-05-27

    An explicit matrix product ansatz is presented, in the first two orders in the (weak) coupling parameter, for the nonequilibrium steady state of the homogeneous, nearest neighbor Heisenberg XXZ spin 1/2 chain driven by Lindblad operators which act only at the edges of the chain. The first order of the density operator becomes, in the thermodynamic limit, an exact pseudolocal conservation law and yields-via the Mazur inequality-a rigorous lower bound on the high-temperature spin Drude weight. Such a Mazur bound is a nonvanishing fractal function of the anisotropy parameter Δ for |Δ|<1. PMID:21699339

  13. Dynamics of open quantum spin systems: An assessment of the quantum master equation approach

    NASA Astrophysics Data System (ADS)

    Zhao, P.; De Raedt, H.; Miyashita, S.; Jin, F.; Michielsen, K.

    2016-08-01

    Data of the numerical solution of the time-dependent Schrödinger equation of a system containing one spin-1/2 particle interacting with a bath of up to 32 spin-1/2 particles is used to construct a Markovian quantum master equation describing the dynamics of the system spin. The procedure of obtaining this quantum master equation, which takes the form of a Bloch equation with time-independent coefficients, accounts for all non-Markovian effects inasmuch the general structure of the quantum master equation allows. Our simulation results show that, with a few rather exotic exceptions, the Bloch-type equation with time-independent coefficients provides a simple and accurate description of the dynamics of a spin-1/2 particle in contact with a thermal bath. A calculation of the coefficients that appear in the Redfield master equation in the Markovian limit shows that this perturbatively derived equation quantitatively differs from the numerically estimated Markovian master equation, the results of which agree very well with the solution of the time-dependent Schrödinger equation.

  14. Dynamics of open quantum spin systems: An assessment of the quantum master equation approach.

    PubMed

    Zhao, P; De Raedt, H; Miyashita, S; Jin, F; Michielsen, K

    2016-08-01

    Data of the numerical solution of the time-dependent Schrödinger equation of a system containing one spin-1/2 particle interacting with a bath of up to 32 spin-1/2 particles is used to construct a Markovian quantum master equation describing the dynamics of the system spin. The procedure of obtaining this quantum master equation, which takes the form of a Bloch equation with time-independent coefficients, accounts for all non-Markovian effects inasmuch the general structure of the quantum master equation allows. Our simulation results show that, with a few rather exotic exceptions, the Bloch-type equation with time-independent coefficients provides a simple and accurate description of the dynamics of a spin-1/2 particle in contact with a thermal bath. A calculation of the coefficients that appear in the Redfield master equation in the Markovian limit shows that this perturbatively derived equation quantitatively differs from the numerically estimated Markovian master equation, the results of which agree very well with the solution of the time-dependent Schrödinger equation. PMID:27627265

  15. The wild-type gene for glutamine synthetase restores ammonia control of nitrogen fixation to Gln- (glnA) mutants of Rhodopseudomonas capsulata.

    PubMed Central

    Scolnik, P A; Virosco, J; Haselkorn, R

    1983-01-01

    The wild-type glnA gene, coding for glutamine synthetase, was cloned from the photosynthetic bacterium Rhodopseudomonas capsulata by using a cosmid library to complement the Gln- phenotype of an Escherichia coli glnA deletion strain. The original cosmid plasmid contained 37 kilobase pairs (kbp) of R. capsulata DNA, of which only 2 kbp was necessary for Gln complementation in E. coli. A plasmid containing this 2-kbp insert was mobilized into G29, a Gln- mutant of R. capsulata which is also unable to repress nitrogenase in ammonia-containing media (Nifc phenotype). The 2-kbp fragment restored glutamine-independent growth and ammonia repression of nitrogenase, indicating that in R. capsulata, production of the signal for nitrogen repression of nif depends on the activity of the glnA gene. Repression of nitrogenase was shown, by hybridization of RNA to cloned nif DNA, to occur at the level of transcription in the wild-type and the complemented G29 strains. Images PMID:6134715

  16. Efficient and accurate local single reference correlation methods for high-spin open-shell molecules using pair natural orbitals

    NASA Astrophysics Data System (ADS)

    Hansen, Andreas; Liakos, Dimitrios G.; Neese, Frank

    2011-12-01

    A production level implementation of the high-spin open-shell (spin unrestricted) single reference coupled pair, quadratic configuration interaction and coupled cluster methods with up to doubly excited determinants in the framework of the local pair natural orbital (LPNO) concept is reported. This work is an extension of the closed-shell LPNO methods developed earlier [F. Neese, F. Wennmohs, and A. Hansen, J. Chem. Phys. 130, 114108 (2009), 10.1063/1.3086717; F. Neese, A. Hansen, and D. G. Liakos, J. Chem. Phys. 131, 064103 (2009), 10.1063/1.3173827]. The internal space is spanned by localized orbitals, while the external space for each electron pair is represented by a truncated PNO expansion. The laborious integral transformation associated with the large number of PNOs becomes feasible through the extensive use of density fitting (resolution of the identity (RI)) techniques. Technical complications arising for the open-shell case and the use of quasi-restricted orbitals for the construction of the reference determinant are discussed in detail. As in the closed-shell case, only three cutoff parameters control the average number of PNOs per electron pair, the size of the significant pair list, and the number of contributing auxiliary basis functions per PNO. The chosen threshold default values ensure robustness and the results of the parent canonical methods are reproduced to high accuracy. Comprehensive numerical tests on absolute and relative energies as well as timings consistently show that the outstanding performance of the LPNO methods carries over to the open-shell case with minor modifications. Finally, hyperfine couplings calculated with the variational LPNO-CEPA/1 method, for which a well-defined expectation value type density exists, indicate the great potential of the LPNO approach for the efficient calculation of molecular properties.

  17. In vitro uridylylation of the Azospirillum brasilense N-signal transducing GlnZ protein.

    PubMed

    Araujo, Mariana S; Baura, Valter A; Souza, Emanuel M; Benelli, Elaine M; Rigo, Liu U; Steffens, M Berenice R; Pedrosa, Fabio O; Chubatsu, Leda S

    2004-01-01

    Azospirillum brasilense is a diazotroph which associates with important agricultural crops. The nitrogen fixation process in this organism is highly regulated by ammonium and oxygen, and involves several proteins including the two PII-like proteins, GlnB and GlnZ. Although these proteins are structurally very similar, they play different roles in the control of nitrogen fixation. In this work, we describe the expression, purification, and uridylylation of the GlnZ protein of A. brasilense strain FP2. The amplified glnZ gene was sub-cloned and expressed as a His-tagged fusion protein. After purification, we obtained 30-40 mg of purified GlnZ per liter of culture. This protein was purified to 99% purity and assayed for in vitro uridylylation using a partially purified Escherichia coli GlnD as a source of uridylylyl-transferase activity. Analyses of the uridylylation reactions in non-denaturing and denaturing polyacrylamide gel electrophoresis showed that up to 74% of GlnZ monomers were modified after 30 min reaction. This covalent modification is strictly dependent on ATP and 2-ketoglutarate, while glutamine acts as an inhibitor and promotes deuridylylation.

  18. Combined study of 2 S and 1 D open-charm mesons with natural spin-parity

    NASA Astrophysics Data System (ADS)

    Chen, Bing; Liu, Xiang; Zhang, Ailin

    2015-08-01

    In this paper, we perform a combined study of 2 S and 1 D open-charm mesons with natural spin-parity. Our results indicate that D1*(2600 )/Ds1 *(2700 ) and D1*(2760 )/Ds1 *(2860 ) are predominantly the 2 3S1 3 and 1 3D1 charmed/charmed-strange mesons, respectively, while D3*(2760 )/Ds3 *(2860 ) can be regarded as the 1 3<.SUP>D3 3 charmed/charmed-strange mesons. In addition, some typical ratios of partial widths of the discussed natural states are predicted, by which future experiments can test these assignments, especially for the 2 S -1 D mixing scheme existing in D1*(2600 )/D1*(2760 ) and Ds1 *(2700 )/Ds1 *(2860 ).

  19. Synthetic approaches to peptides containing the L-Gln-L-Val-D(S)-Dmt motif.

    PubMed

    Suaifan, Ghadeer A R Y; Arafat, Tawfiq; Threadgill, Michael D

    2007-05-15

    The pseudoprolines S-Dmo (5,5-dimethyl-4-oxaproline) and R-Dmt (5,5-dimethyl-4-thiaproline) have been used to study the effects of forcing a fully cis conformation in peptides. Synthesis of peptides containing these (which have the same configuration as L-Pro) is straightforward. However, synthesis of peptides containing S-Dmt is difficult, owing to the rapid cyclisation of L-Aaa-S-Dmt amides and esters to form the corresponding diketopiperazines (DKP); thus the intermediacy of L-Aaa-S-Dmt amides and esters must be avoided in the synthetic sequence. Peptides containing the L-Gln-L-Val-D(S)-Dmt motif are particularly difficult, owing to the insolubility of coupling partners containing Gln. Introduction of Gln as N-Boc-pyroglutamate overcame the latter difficulty and the dipeptide active ester BocPygValOC(6)F(5) coupled in good yield with S-DmtOH. BocPygVal-S- DmtNH(CH(2))(2)C(6)H(4)NO(2) was converted quantitatively to BocGlnVal-S-DmtNH(CH(2))(2)C(6)H(4)NO(2) with ammonia, demonstrating the utility of this approach. Two peptide derivatives (CbzSerLysLeuGlnVal-S-DmtNH(CH(2))(2)C(6)H(4)NO(2) and CbzSerSerLysLeuGlnVal-S- DmtNH(CH(2))(2)C(6)H(4)NO(2)) were assembled, using these new methods of coupling a dipeptide acid active ester with S-DmtOH and introduction of Gln as Pyg, followed by conventional peptide couplings. The presence of the Val caused these peptides to be cleaved very slowly by prostate-specific antigen (PSA) at Leu Gln, rather than the expected Gln Val.

  20. Dual-targeted tRNA-dependent amidotransferase ensures both mitochondrial and chloroplastic Gln-tRNAGln synthesis in plants.

    PubMed

    Pujol, Claire; Bailly, Marc; Kern, Daniel; Maréchal-Drouard, Laurence; Becker, Hubert; Duchêne, Anne-Marie

    2008-04-29

    Aminoacyl-tRNAs are generally formed by direct attachment of an amino acid to tRNAs by aminoacyl-tRNA synthetases, but Gln-tRNA is an exception to this rule. Gln-tRNA(Gln) is formed by this direct pathway in the eukaryotic cytosol and in protists or fungi mitochondria but is formed by an indirect transamidation pathway in most of bacteria, archaea, and chloroplasts. We show here that the formation of Gln-tRNA(Gln) is also achieved by the indirect pathway in plant mitochondria. The mitochondrial-encoded tRNA(Gln), which is the only tRNA(Gln) present in mitochondria, is first charged with glutamate by a nondiscriminating GluRS, then is converted into Gln-tRNA(Gln) by a tRNA-dependent amidotransferase (AdT). The three subunits GatA, GatB, and GatC are imported into mitochondria and assemble into a functional GatCAB AdT. Moreover, the mitochondrial pathway of Gln-tRNA(Gln) formation is shared with chloroplasts as both the GluRS, and the three AdT subunits are dual-imported into mitochondria and chloroplasts.

  1. Multiple Targets on the Gln3 Transcription Activator Are Cumulatively Required for Control of Its Cytoplasmic Sequestration

    PubMed Central

    Rai, Rajendra; Tate, Jennifer J.; Cooper, Terrance G.

    2016-01-01

    A remarkable characteristic of nutritional homeostatic mechanisms is the breadth of metabolite concentrations to which they respond, and the resolution of those responses; adequate but rarely excessive. Two general ways of achieving such exquisite control are known: stoichiometric mechanisms where increasing metabolite concentrations elicit proportionally increasing responses, and the actions of multiple independent metabolic signals that cumulatively generate appropriately measured responses. Intracellular localization of the nitrogen-responsive transcription activator, Gln3, responds to four distinct nitrogen environments: nitrogen limitation or short-term starvation, i.e., nitrogen catabolite repression (NCR), long-term starvation, glutamine starvation, and rapamycin inhibition of mTorC1. We have previously identified unique sites in Gln3 required for rapamycin-responsiveness, and Gln3-mTor1 interaction. Alteration of the latter results in loss of about 50% of cytoplasmic Gln3 sequestration. However, except for the Ure2-binding domain, no evidence exists for a Gln3 site responsible for the remaining cytoplasmic Gln3-Myc13 sequestration in nitrogen excess. Here, we identify a serine/threonine-rich (Gln3477–493) region required for effective cytoplasmic Gln3-Myc13 sequestration in excess nitrogen. Substitutions of alanine but not aspartate for serines in this peptide partially abolish cytoplasmic Gln3 sequestration. Importantly, these alterations have no effect on the responses of Gln3-Myc13 to rapamycin, methionine sulfoximine, or limiting nitrogen. However, cytoplasmic Gln3-Myc13 sequestration is additively, and almost completely, abolished when mutations in the Gln3-Tor1 interaction site are combined with those in Gln3477–493 cytoplasmic sequestration site. These findings clearly demonstrate that multiple individual regulatory pathways cumulatively control cytoplasmic Gln3 sequestration. PMID:26976442

  2. Characterization of the glnK-amtB operon of Azotobacter vinelandii.

    PubMed

    Meletzus, D; Rudnick, P; Doetsch, N; Green, A; Kennedy, C

    1998-06-01

    To determine whether in Azotobacter vinelandii the PII protein influences the regulation of nif gene expression in response to fluxes in the ammonium supply, the gene encoding PII was isolated and characterized. Its deduced translation product was highly similar to PII proteins from other organisms, with the greatest degree of relatedness being exhibited to the Escherichia coli glnK gene product. A gene designated amtB was found downstream of and was contranscribed with glnK as in E. coli. The AmtB protein is similar to functionally characterized ammonium transport proteins from a few other eukaryotes and one other prokaryote. glnK and amtB comprise an operon. Attempts to isolate a stable glnK mutant strain were unsuccessful, suggesting that glnK, like glnA, is an essential gene in A. vinelandii. amtB mutants were isolated, and although growth on limiting amounts of ammonium was similar in the mutant and wild-type strains, the mutants were unable to transport [14C]methylammonium.

  3. Schelling segregation in an open city: A kinetically constrained Blume-Emery-Griffiths spin-1 system

    NASA Astrophysics Data System (ADS)

    Gauvin, Laetitia; Nadal, Jean-Pierre; Vannimenus, Jean

    2010-06-01

    In the 70s Schelling introduced a multiagent model to describe the segregation dynamics that may occur with individuals having only weak preferences for “similar” neighbors. Recently variants of this model have been discussed, in particular, with emphasis on the links with statistical physics models. Whereas these models consider a fixed number of agents moving on a lattice, here, we present a version allowing for exchanges with an external reservoir of agents. The density of agents is controlled by a parameter which can be viewed as measuring the attractiveness of the city lattice. This model is directly related to the zero-temperature dynamics of the Blume-Emery-Griffiths spin-1 model, with kinetic constraints. With a varying vacancy density, the dynamics with agents making deterministic decisions leads to a variety of “phases” whose main features are the characteristics of the interfaces between clusters of agents of different types. The domains of existence of each type of interface are obtained analytically as well as numerically. These interfaces may completely isolate the agents leading to another type of segregation as compared to what is observed in the original Schelling model, and we discuss its possible socioeconomic correlates.

  4. Functional analysis of three amino acid residues of purR repressor, Trpl47, Gln-218 and Gln-292 in Salmonella typhimurium.

    PubMed

    Zhang, H; Wang, A

    2001-04-01

    The amber mutation sites of 6 purR(am) mutants were determined by cloning and DNA sequencing. The results showed that the mutations were distributed at three different sites in PurR coding region, G(721)(-->A), C(933)(-->T) and C(1155)(-->T), which respectively turn Trp-147, Gln-218 and Gln-292 of PurR into TAG terminal codon. To determine the effect of the three amino acid residues on regulatory function of PurR protein 5 different kinds of tRNA suppressor genes, Su3, Su4, Su6, Su7 and Su9 were used for creating the PurR protein variants with single amino acid substitution. The results indicated that Cys, Glu, Gly, His and Arg which substituted Trp-147 respectively all could not recover the regulation function of PurR. It confirmed that Trp-147 is a critical amino acid for the PurR function. Gln-292 substituted respectively by the same amino acids also could not recover the PurR function, demonstrating that Gln-292 is also an important amino acid residue in PurR.

  5. Lethality of glnD null mutations in Azotobacter vinelandii is suppressible by prevention of glutamine synthetase adenylylation.

    PubMed

    Colnaghi, R; Rudnick, P; He, L; Green, A; Yan, D; Larson, E; Kennedy, C

    2001-05-01

    GlnD is a pivotal protein in sensing intracellular levels of fixed nitrogen and has been best studied in enteric bacteria, where it reversibly uridylylates two related proteins, PII and GlnK. The uridylylation state of these proteins determines the activities of glutamine synthetase (GS) and NtrC. Results presented here demonstrate that glnD is an essential gene in Azotobacter vinelandii. Null glnD mutations were introduced into the A. vinelandii genome, but none could be stably maintained unless a second mutation was present that resulted in unregulated activity of GS. One mutation, gln-71, occurred spontaneously to give strain MV71, which failed to uridylylate the GlnK protein. The second, created by design, was glnAY407F (MV75), altering the adenylylation site of GS. The gln-71 mutation is probably located in glnE, encoding adenylyltransferase, because introducing the Escherichia coli glnE gene into MV72, a glnD(+) derivative of MV71, restored the regulation of GS activity. GlnK-UMP is therefore apparently required for GS to be sufficiently deadenylylated in A. vinelandii for growth to occur. The DeltaglnD GS(c) isolates were Nif(-), which could be corrected by introducing a nifL mutation, confirming a role for GlnD in mediating nif gene regulation via some aspect of the NifL/NifA interaction. MV71 was unexpectedly NtrC(+), suggesting that A. vinelandii NtrC activity might be regulated differently than in enteric organisms.

  6. GlnR-Mediated Regulation of ectABCD Transcription Expands the Role of the GlnR Regulon to Osmotic Stress Management

    PubMed Central

    Shao, ZhiHui; Deng, WanXin; Li, ShiYuan; He, JuanMei; Ren, ShuangXi; Huang, WeiRen; Lu, YinHua; Zhao, GuoPing

    2015-01-01

    ABSTRACT Ectoine and hydroxyectoine are excellent compatible solutes for bacteria to deal with environmental osmotic stress and temperature damages. The biosynthesis cluster of ectoine and hydroxyectoine is widespread among microorganisms, and its expression is activated by high salinity and temperature changes. So far, little is known about the mechanism of the regulation of the transcription of ect genes and only two MarR family regulators (EctR1 in methylobacteria and the EctR1-related regulator CosR in Vibrio cholerae) have been found to negatively regulate the expression of ect genes. Here, we characterize GlnR, the global regulator for nitrogen metabolism in actinomycetes, as a negative regulator for the transcription of ectoine/hydroxyectoine biosynthetic genes (ect operon) in Streptomyces coelicolor. The physiological role of this transcriptional repression by GlnR is proposed to protect the intracellular glutamate pool, which acts as a key nitrogen donor for both the nitrogen metabolism and the ectoine/hydroxyectoine biosynthesis. IMPORTANCE High salinity is deleterious, and cells must evolve sophisticated mechanisms to cope with this osmotic stress. Although production of ectoine and hydroxyectoine is one of the most frequently adopted strategies, the in-depth mechanism of regulation of their biosynthesis is less understood. So far, only two MarR family negative regulators, EctR1 and CosR, have been identified in methylobacteria and Vibrio, respectively. Here, our work demonstrates that GlnR, the global regulator for nitrogen metabolism, is a negative transcriptional regulator for ect genes in Streptomyces coelicolor. Moreover, a close relationship is found between nitrogen metabolism and osmotic resistance, and GlnR-mediated regulation of ect transcription is proposed to protect the intracellular glutamate pool. Meanwhile, the work reveals the multiple roles of GlnR in bacterial physiology. PMID:26170409

  7. The minimal transactivation region of Saccharomyces cerevisiae Gln3p is localized to 13 amino acids.

    PubMed Central

    Svetlov, V; Cooper, T G

    1997-01-01

    Regulated nitrogen catabolic gene transcription in Saccharomyces cerevisiae is mediated by four positive (Gln3p and Gat1p/Nil1p) and negative (Dal80p/Uga43p and Deh1p/Nil2p/GZF3p) regulators which function in opposition to one another. All four proteins contain GATA-type zinc finger domains, and three of them (Gln3p, Dal80p, and Deh1p) have been shown to bind to GATA sequences situated upstream of genes whose expression is sensitive to nitrogen catabolite repression (NCR). The positive regulators, Gln3p and Gat1p, are able to support transcriptional activation when tethered by LexAp to the promoter of a reporter gene whose upstream activation sequences have been replaced with one or more lexA operator sites. Existing data suggest that these four proteins regulate transcription by competing with one another for binding to the GATA sequences which mediate NCR-sensitive gene expression. We show that the minimal Gln3p domain mediating transcriptional activation consists of 13 amino acids with a predicted propensity to form an alpha-helix. Genetic analysis of this region (Gln3p residues 126 to 138, QQNGEIAQLWDFN) demonstrated that alanine may be substituted for the aromatic and acidic amino acids without destroying transcriptional activation potential. Similar substitution of alanine for the two hydrophobic amino acids, isoleucine and leucine, however, destroys activation, as does introduction of basic amino acids in place of the acidic residues or introduction of proline into the center of the sequence. A point mutation in the Gln3p activation region destroys its in vivo ability to support NCR-sensitive DAL5 expression. We find no convincing evidence that NCR regulates Gln3p function by modulating the functioning of its activation region. PMID:9401021

  8. Synthesis of Glu-tRNA(Gln) by engineered and natural aminoacyl-tRNA synthetases.

    PubMed

    Rodríguez-Hernández, Annia; Bhaskaran, Hari; Hadd, Andrew; Perona, John J

    2010-08-10

    A protein engineering approach to delineating which distinct elements of homologous tRNA synthetase architectures are responsible for divergent RNA-amino acid pairing specificities is described. Previously, we constructed a hybrid enzyme in which 23 amino acids from the catalytic domain of Escherichia coli glutaminyl-tRNA synthetase (GlnRS) were replaced with the corresponding residues of human glutamyl-tRNA synthetase (GluRS). The engineered hybrid (GlnRS S1/L1/L2) synthesizes Glu-tRNA(Gln) more than 10(4)-fold more efficiently than GlnRS. Detailed comparison of kinetic parameters between GlnRS S1/L1/L2 and the naturally occurring Methanothermobacter thermautotrophicus GluRS(ND), which is also capable of Glu-tRNA(Gln) synthesis, now shows that both k(cat) and K(m) for glutamate are recapitulated in the engineered enzyme, but that K(m) for tRNA is 200-fold higher. Thus, the simultaneous optimization of paired amino acid and tRNA binding sites found in a naturally occurring enzyme is not recapitulated in a hybrid that is successfully engineered for amino acid complementarity. We infer that the GlnRS architecture has differentiated to match only cognate amino acid-RNA pairs, and that the substrate selection functions do not operate independently of each other. Design and characterization of four additional hybrids identify further residues involved in improving complementarity for glutamate and in communicating between amino acid and tRNA binding sites. The robust catalytic function demonstrated in this engineered system offers a novel platform for exploring the stereochemical origins of coding as a property of the ancient Rossmann fold.

  9. Characterization of a New GlnR Binding Box in the Promoter of amtB in Streptomyces coelicolor Inferred a PhoP/GlnR Competitive Binding Mechanism for Transcriptional Regulation of amtB

    PubMed Central

    Wang, Ying; Cen, Xu-Feng

    2012-01-01

    The transcription of amtB in Streptomyces coelicolor has been proposed to be counter-regulated by GlnR (a global regulator for nitrogen metabolism) and PhoP (a global regulator for phosphate metabolism). However, the GlnR-protected region, which was deduced to be two 22-bp GlnR binding boxes (gTnAc-n6-GaAAc-n6-GtnAC-n6-GAAAc-n6, abbreviated as a1-b1 and a2-b2), was separated from the PhoP-protected region in the promoter of amtB, leaving the mechanism for this regulation undefined. In this study, another 22-bp GlnR binding box, which consisted of a3-site-n6-b3-site (a3-b3) overlapping with the PhoP-binding sequences, was identified in the promoter region of amtB by a DNase I footprinting assay. An electrophoretic mobility shift assay (EMSA) using purified recombinant GlnR and the synthetic amtB promoter fragments with the three GlnR binding boxes individually mutated demonstrated that every box was involved in GlnR binding in vitro. Further in vivo assays using the egfp reporter gene fused to various kinds of mutated promoter regions of amtB demonstrated that all of the three GlnR binding boxes were required for GlnR-mediated activation of amtB transcription under the nitrogen-limited condition. The results of EMSA using the amtB promoter with mixtures of recombinant His-tagged GlnR and Trx-His-S-tagged PhoP inferred that PhoP might compete against GlnR from binding at the a3-b3 site, attributable to the PhoP/GlnR counter-regulatory function subjected to further experimental proof. PMID:22821977

  10. The crystal structure of human GlnRS provides basis for the development of neurological disorders

    PubMed Central

    Ognjenović, Jana; Wu, Jiang; Matthies, Doreen; Baxa, Ulrich; Subramaniam, Sriram; Ling, Jiqiang; Simonović, Miljan

    2016-01-01

    Cytosolic glutaminyl-tRNA synthetase (GlnRS) is the singular enzyme responsible for translation of glutamine codons. Compound heterozygous mutations in GlnRS cause severe brain disorders by a poorly understood mechanism. Herein, we present crystal structures of the wild type and two pathological mutants of human GlnRS, which reveal, for the first time, the domain organization of the intact enzyme and the structure of the functionally important N-terminal domain (NTD). Pathological mutations mapping in the NTD alter the domain structure, and decrease catalytic activity and stability of GlnRS, whereas missense mutations in the catalytic domain induce misfolding of the enzyme. Our results suggest that the reduced catalytic efficiency and a propensity of GlnRS mutants to misfold trigger the disease development. This report broadens the spectrum of brain pathologies elicited by protein misfolding and provides a paradigm for understanding the role of mutations in aminoacyl-tRNA synthetases in neurological diseases. PMID:26869582

  11. The crystal structure of human GlnRS provides basis for the development of neurological disorders

    DOE PAGESBeta

    Ognjenovic, Jana; Wu, Jiang; Matthies, Doreen; Baxa, Ulrich; Subramaniam, Sriram; Ling, Jiqiang; Simonovic, Miljan

    2016-02-10

    Cytosolic glutaminyl-tRNA synthetase (GlnRS) is the singular enzyme responsible for translation of glutamine codons. Compound heterozygous mutations in GlnRS cause severe brain disorders by a poorly understood mechanism. Herein, we present crystal structures of the wild type and two pathological mutants of human GlnRS, which reveal, for the first time, the domain organization of the intact enzyme and the structure of the functionally important N-terminal domain (NTD). Pathological mutations mapping in the NTD alter the domain structure, and decrease catalytic activity and stability of GlnRS, whereas missense mutations in the catalytic domain induce misfolding of the enzyme. Our results suggestmore » that the reduced catalytic efficiency and a propensity of GlnRS mutants to misfold trigger the disease development. As a result, this report broadens the spectrum of brain pathologies elicited by protein misfolding and provides a paradigm for understanding the role of mutations in aminoacyl-tRNA synthetases in neurological diseases. Keywords« less

  12. Potential roles for the glnB and ntrYX genes in Azospirillum brasilense.

    PubMed

    Vitorino, J C; Steffens, M B; Machado, H B; Yates, M G; Souza, E M; Pedrosa, F O

    2001-07-24

    Three Azospirillum brasilense mutants constitutive for nitrogen fixation (Nif(C)) in the presence of NH4(+) and deficient in nitrate-dependent growth were used as tools to define the roles of the glnB and ntrYX genes in this organism. Mutant HM14 was complemented for nitrate-dependent growth and NH4(+) regulation of nitrogenase by plasmid pL46 which contains the ntrYX genes of A. brasilense. Mutant HM26 was restored for NH4(+) regulation and nitrate-dependent growth by plasmid pJC1, carrying the A. brasilense glnB gene expressed from a constitutive promoter. Mutant HM053, on the other hand, was not complemented for NH4(+) regulation of nitrogenase and nitrate-dependent growth by both plasmids pJCI and pL46. The levels and control of glutamine synthetase activity of all mutants were not affected by both plasmids pL46 (ntrYX) and pJC1 (glnB). These results support the characterization of strains HM14 as an ntrYX mutant and strain HM26 as a glnB mutant and the involvement of ntrYX and glnB in the regulation of the general nitrogen metabolism in A. brasilense.

  13. Nitrogenase switch-off by ammonium ions in Azospirillum brasilense requires the GlnB nitrogen signal-transducing protein.

    PubMed

    Klassen, Giseli; Souza, Emanuel M; Yates, M Geoffrey; Rigo, Liu Un; Costa, Roberta M; Inaba, Juliana; Pedrosa, Fábio O

    2005-09-01

    Nitrogenase activity in several diazotrophs is switched off by ammonium and reactivated after consumption. The signaling pathway to this system in Azospirillum brasilense is not understood. We show that ammonium-dependent switch-off through ADP-ribosylation of Fe protein was partial in a glnB mutant of A. brasilense but absent in a glnB glnZ double mutant. Triggering of inactivation by anaerobic conditions was not affected in either mutant. The results suggest that glnB is necessary for full ammonium-dependent nitrogenase switch-off in A. brasilense.

  14. A meta-analysis of xeroderma pigmentosum gene D Ls751Gln polymorphism and susceptibility to hepatocellular carcinoma.

    PubMed

    Wang, Yu; Zhao, Yingren; Zhang, Aiyun; Ma, Juan; Wang, Zhenzhen; Zhang, Xu

    2015-01-01

    Hepatocellular carcinoma (HCC) is one of most common malignant tumors worldwide, but with unclear mechanisms. Xeroderma pigmentosum gene D (XPD) is one important DNA damage repair gene and can be involved in protein mutation. Currently little has been known about XPD polymorphism and HCC susceptibility in Chinese people. This study used a meta-analysis approach to comprehensively investigate the correlation between XPD polymorphism and HCC susceptibility in Chinese population, based on previously published literatures. A computer retrieval system was used to collect all case-control studies about XPD Lys751Gln polymorphism and HCC susceptibility. Data in literatures were extracted for meta-analysis. After the primary screening, four independent studies, which were published in 3 English articles and one Chinese article, were recruited in this study. There were 1,717 samples included in all studies. Using Gln/Gln + Lys/Gln, Lys/Lys + Lys/Gln and Lys allels as the reference, HCC disease alleles including Lys/Lys, Gln/Gln and Gln had OR values (95% CI, I(2)) of 1.007 (0.657~4.672, 91%), 3.516 (0.220~20.661, 48%) and 3.225 (0.278~12.326, 84%), respectively. The polymorphism of XPD751 loci is closely correlated with primary HCC. Lys751Gln polymorphism of XPD gene can be used as one susceptibility factor for HCC. PMID:26722489

  15. Nuclear Gln3 Import Is Regulated by Nitrogen Catabolite Repression Whereas Export Is Specifically Regulated by Glutamine.

    PubMed

    Rai, Rajendra; Tate, Jennifer J; Shanmuganatham, Karthik; Howe, Martha M; Nelson, David; Cooper, Terrance G

    2015-11-01

    Gln3, a transcription activator mediating nitrogen-responsive gene expression in Saccharomyces cerevisiae, is sequestered in the cytoplasm, thereby minimizing nitrogen catabolite repression (NCR)-sensitive transcription when cells are grown in nitrogen-rich environments. In the face of adverse nitrogen supplies, Gln3 relocates to the nucleus and activates transcription of the NCR-sensitive regulon whose products transport and degrade a variety of poorly used nitrogen sources, thus expanding the cell's nitrogen-acquisition capability. Rapamycin also elicits nuclear Gln3 localization, implicating Target-of-rapamycin Complex 1 (TorC1) in nitrogen-responsive Gln3 regulation. However, we long ago established that TorC1 was not the sole regulatory system through which nitrogen-responsive regulation is achieved. Here we demonstrate two different ways in which intracellular Gln3 localization is regulated. Nuclear Gln3 entry is regulated by the cell's overall nitrogen supply, i.e., by NCR, as long accepted. However, once within the nucleus, Gln3 can follow one of two courses depending on the glutamine levels themselves or a metabolite directly related to glutamine. When glutamine levels are high, e.g., glutamine or ammonia as the sole nitrogen source or addition of glutamine analogues, Gln3 can exit from the nucleus without binding to DNA. In contrast, when glutamine levels are lowered, e.g., adding additional nitrogen sources to glutamine-grown cells or providing repressive nonglutamine nitrogen sources, Gln3 export does not occur in the absence of DNA binding. We also demonstrate that Gln3 residues 64-73 are required for nuclear Gln3 export.

  16. Bacillus subtilis glutamine synthetase regulates its own synthesis by acting as a chaperone to stabilize GlnR-DNA complexes.

    PubMed

    Fisher, Susan H; Wray, Lewis V

    2008-01-22

    The Bacillus subtilis GlnR repressor controls gene expression in response to nitrogen availability. Because all GlnR-regulated genes are expressed constitutively in mutants lacking glutamine synthetase (GS), GS is required for repression by GlnR. Feedback-inhibited GS (FBI-GS) was shown to activate GlnR DNA binding with an in vitro electophoretic mobility shift assay (EMSA). The activation of GlnR DNA binding by GS in these experiments depended on the feedback inhibitor glutamine and did not occur with mutant GS proteins defective in regulating GlnR activity in vivo. Although stable GS-GlnR-DNA ternary complexes were not observed in the EMSA experiments, cross-linking experiments showed that a protein-protein interaction occurs between GlnR and FBI-GS. This interaction was reduced in the absence of the feedback inhibitor glutamine and with mutant GS proteins. Because FBI-GS significantly reduced the dissociation rate of the GlnR-DNA complexes, the stability of these complexes is enhanced by FBI-GS. These results argue that FBI-GS acts as a chaperone that activates GlnR DNA binding through a transient protein-protein interaction that stabilizes GlnR-DNA complexes. GS was shown to control the activity of the B. subtilis nitrogen transcription factor TnrA by forming a stable complex between FBI-GS and TnrA that inhibits TnrA DNA binding. Thus, B. subtilis GS is an enzyme with dual catalytic and regulatory functions that uses distinct mechanisms to control the activity of two different transcription factors.

  17. Orbital-optimized opposite-spin scaled second order correlation: An economical method to improve the description of open-shell molecules

    SciTech Connect

    Lochan, Rohini C.; Head-Gordon, Martin

    2007-01-01

    Coupled cluster methods based on Brueckner orbitals are well-known to resolve the problems of symmetry-breaking and spin-contamination that are often associated with Hartree-Fock orbitals. However their computational cost is large enough to prevent application to large molecules. Here they present a simple approximation where the orbitals are optimized with the mean-field energy plus a correlation energy taken as the opposite-spin component of the second order many-body correlation energy, scaled by an empirically chosen parameter (recommended as 1.2 for general applications). This optimized 2nd order opposite spin (abbreviated as O2) method requires fourth order computation on each orbital iteration. O2 is shown to yield predictions of structure and frequencies for closed shell molecules that are very similar to scaled second order Moller-Plesset methods. However it yields substantial improvements for open shell molecules, where problems with spin-contamination and symmetry breaking are shown to be greatly reduced.

  18. Analytic first derivatives for a spin-adapted open-shell coupled cluster theory: Evaluation of first-order electrical properties

    SciTech Connect

    Datta, Dipayan Gauss, Jürgen

    2014-09-14

    An analytic scheme is presented for the evaluation of first derivatives of the energy for a unitary group based spin-adapted coupled cluster (CC) theory, namely, the combinatoric open-shell CC (COSCC) approach within the singles and doubles approximation. The widely used Lagrange multiplier approach is employed for the derivation of an analytical expression for the first derivative of the energy, which in combination with the well-established density-matrix formulation, is used for the computation of first-order electrical properties. Derivations of the spin-adapted lambda equations for determining the Lagrange multipliers and the expressions for the spin-free effective density matrices for the COSCC approach are presented. Orbital-relaxation effects due to the electric-field perturbation are treated via the Z-vector technique. We present calculations of the dipole moments for a number of doublet radicals in their ground states using restricted open-shell Hartree-Fock (ROHF) and quasi-restricted HF (QRHF) orbitals in order to demonstrate the applicability of our analytic scheme for computing energy derivatives. We also report calculations of the chlorine electric-field gradients and nuclear quadrupole-coupling constants for the CCl, CH{sub 2}Cl, ClO{sub 2}, and SiCl radicals.

  19. Polariton condensates: Electrical spin switching

    NASA Astrophysics Data System (ADS)

    Liew, T. C. H.

    2016-10-01

    Ultra-low-power electronic switching of stable exciton-polariton spin states has now been achieved in a semiconductor microcavity. This opens a new route to the integration of spin-based photonics and electronics.

  20. Leptin receptor expression and Gln223Arg polymorphism as prognostic markers in oral and oropharyngeal cancer.

    PubMed

    Rodrigues, P R S; Maia, L L; Santos, M; Peterle, G T; Alves, L U; Takamori, J T; Souza, R P; Barbosa, W M; Mercante, A M C; Nunes, F D; Carvalho, M B; Tajara, E H; Louro, I D; Silva-Conforti, A M A

    2015-11-25

    The leptin gene product is released into the blood stream, passes through the blood-brain barrier, and finds the leptin receptor (LEPR) in the central nervous system. This hormone regulates food intake, hematopoiesis, inflammation, immunity, differentiation, and cell proliferation. The LEPR Gln223Arg polymorphism has been reported to alter receptor function and expression, both of which have been related with prognostics in several tumor types. Furthermore, several studies have shown a relationship between the Gln223Arg polymorphism and tumor development, and its role in oral and oropharyngeal squamous cell carcinoma is now well understood. In this study, 315 DNA samples were used for LEPR Gln223Arg genotyping and 87 primary oral and oropharyngeal squamous cell carcinomas were used for immunohistochemical expression analysis, such that a relationship between these and tumor development and prognosis could be established. Homozygous LEPR Arg223 was found to be associated with a 2-fold reduction in oral and oropharyngeal cancer risk. In contrast, the presence of the Arg223 allele in tumors was associated with worse disease-free and disease-specific survival. Low LEPR expression was found to be an independent risk factor, increasing the risk for lymph node metastasis 4-fold. In conclusion, the Gln223Arg polymorphism and LEPR expression might be valuable markers for oral and oropharyngeal cancer, suggesting that LEPR might serve as a potential target for future therapies.

  1. Spin-Hall effect and spin-Coulomb drag in doped semiconductors.

    PubMed

    Hankiewicz, E M; Vignale, G

    2009-06-24

    In this review, we describe in detail two important spin-transport phenomena: the extrinsic spin-Hall effect (coming from spin-orbit interactions between electrons and impurities) and the spin-Coulomb drag. The interplay of these two phenomena is analyzed. In particular, we discuss the influence of scattering between electrons with opposite spins on the spin current and the spin accumulation produced by the spin-Hall effect. Future challenges and open questions are briefly discussed.

  2. TOPICAL REVIEW: Spin-Hall effect and spin-Coulomb drag in doped semiconductors

    NASA Astrophysics Data System (ADS)

    Hankiewicz, E. M.; Vignale, G.

    2009-06-01

    In this review, we describe in detail two important spin-transport phenomena: the extrinsic spin-Hall effect (coming from spin-orbit interactions between electrons and impurities) and the spin-Coulomb drag. The interplay of these two phenomena is analyzed. In particular, we discuss the influence of scattering between electrons with opposite spins on the spin current and the spin accumulation produced by the spin-Hall effect. Future challenges and open questions are briefly discussed.

  3. Nuclear localization domains of GATA activator Gln3 are required for transcription of target genes through dephosphorylation in Saccharomyces cerevisiae.

    PubMed

    Numamoto, Minori; Tagami, Shota; Ueda, Yusuke; Imabeppu, Yusuke; Sasano, Yu; Sugiyama, Minetaka; Maekawa, Hiromi; Harashima, Satoshi

    2015-08-01

    The GATA transcription activator Gln3 in the budding yeast (Saccharomyces cerevisiae) activates transcription of nitrogen catabolite repression (NCR)-sensitive genes. In cells grown in the presence of preferred nitrogen sources, Gln3 is phosphorylated in a TOR-dependent manner and localizes in the cytoplasm. In cells grown in non-preferred nitrogen medium or treated with rapamycin, Gln3 is dephosphorylated and is transported from the cytoplasm to the nucleus, thereby activating the transcription of NCR-sensitive genes. Caffeine treatment also induces dephosphorylation of Gln3 and its translocation to the nucleus and transcription of NCR-sensitive genes. However, the details of the mechanism by which phosphorylation controls Gln3 localization and transcriptional activity are unknown. Here, we focused on two regions of Gln3 with nuclear localization signal properties (NLS-K, and NLS-C) and one with nuclear export signal (NES). We constructed various mutants for our analyses: gln3 containing point mutations in all potential phosphoacceptor sites (Thr-339, Ser-344, Ser-347, Ser-355, Ser-391) in the NLS and NES regions to produce non-phosphorylatable (alanine) or mimic-phosphorylatable (aspartic acid) residues; and deletion mutants. We found that phosphorylation of Gln3 was impaired in all of these mutations and that the aspartic acid substitution mutants showed drastic reduction of Gln3-mediated transcriptional activity despite the fact that the mutations had no effect on nuclear localization of Gln3. Our observations suggest that these regions are required for transcription of target genes presumably through dephosphorylation.

  4. Reciprocal Regulation of GlnR and PhoP in Response to Nitrogen and Phosphate Limitations in Saccharopolyspora erythraea

    PubMed Central

    Yao, Li-li

    2015-01-01

    Nitrogen and phosphate source sensing, uptake, and assimilation are essential for the growth and development of microorganisms. In this study, we demonstrated that SACE_6965 encodes the phosphate regulator PhoP, which controls the transcription of genes involved in phosphate metabolism in the erythromycin-producing Saccharopolyspora erythraea. We found that PhoP and the nitrogen regulator GlnR both regulate the transcription of glnR as well as other nitrogen metabolism-related genes. Interestingly, both GlnR- and PhoP-binding sites were identified in the phoP promoter region. Unlike the nonreciprocal regulation of GlnR and PhoP observed in Streptomyces coelicolor and Streptomyces lividans, GlnR negatively controls the transcription of the phoP gene in S. erythraea. This suggests that GlnR directly affects phosphate metabolism and demonstrates that the cross talk between GlnR and PhoP is reciprocal. Although GlnR and PhoP sites in the glnR and phoP promoter regions are located in close proximity to one another (separated by only 2 to 4 bp), the binding of both regulators to their respective region was independent and noninterfering. These results indicate that two regulators could separately bind to their respective binding sites and control nitrogen and phosphate metabolism in response to environmental changes. The reciprocal cross talk observed between GlnR and PhoP serves as a foundation for understanding the regulation of complex primary and secondary metabolism in antibiotic-producing actinomycetes. PMID:26519391

  5. The feeding route (enteral or parenteral) affects the plasma response of the dipetide Ala-Gln and the amino acids glutamine, citrulline and arginine, with the administration of Ala-Gln in preoperative patients.

    PubMed

    Melis, Gerdien C; Boelens, Petra G; van der Sijp, Joost R M; Popovici, Theodora; De Bandt, Jean-Pascal; Cynober, Luc; van Leeuwen, Paul A M

    2005-07-01

    Enhancement of depressed plasma concentrations of glutamine and arginine is associated with better clinical outcome. Supplementation of glutamine might be a way to provide the patient with glutamine, and also arginine, because glutamine provides the kidney with citrulline, from which the kidney produces arginine when plasma levels of arginine are low. The aim of the present study was to investigate the parenteral and enteral response of the administered dipeptide Ala-Gln, glutamine, citrulline and arginine. Therefore, seven patients received 20 g Ala-Gln, administered over 4 h, parenterally or enterally, on two separate occasions. Arterial blood samples were taken before and during the administration of Ala-Gln. ANOVA and a paired t test were used to test differences (P<0.05). Ala-Gln was undetectable with enteral administration, whereas Ala-Gln remained stable at a plasma concentration of 268 micromol/l throughout parenteral infusion and rapidly decreased towards zero after infusion was stopped. The highest level of glutamine was observed with parenteral infusion of the dipeptide, although enteral infusion also significantly increased plasma levels of glutamine. The highest plasma response of citrulline was observed with the enteral administration of the dipeptide, although parenteral administration also increased plasma levels of citrulline. Plasma arginine increased significantly with parenteral infusion, but not with enteral administration of Ala-Gln. In conclusion, administrations of Ala-Gln, parenteral or enteral, resulted in an increased plasma glutamine response, as compared with baseline. Interestingly, in spite of the high availability of citrulline with enteral administration of the dipeptide, only parenteral infusion of Ala-Gln increased plasma arginine concentration.

  6. Spin foams without spins

    NASA Astrophysics Data System (ADS)

    Hnybida, Jeff

    2016-10-01

    We formulate the spin foam representation of discrete SU(2) gauge theory as a product of vertex amplitudes each of which is the spin network generating function of the boundary graph dual to the vertex. In doing so the sums over spins have been carried out. The boundary data of each n-valent node is explicitly reduced with respect to the local gauge invariance and has a manifest geometrical interpretation as a framed polyhedron of fixed total area. Ultimately, sums over spins are traded for contour integrals over simple poles and recoupling theory is avoided using generating functions.

  7. XRCC1 Arg194Trp and Arg399Gln polymorphisms and arsenic methylation capacity are associated with urothelial carcinoma.

    PubMed

    Chiang, Chien-I; Huang, Ya-Li; Chen, Wei-Jen; Shiue, Horng-Sheng; Huang, Chao-Yuan; Pu, Yeong-Shiau; Lin, Ying-Chin; Hsueh, Yu-Mei

    2014-09-15

    The association between DNA repair gene polymorphisms and bladder cancer has been widely studied. However, few studies have examined the correlation between urothelial carcinoma (UC) and arsenic or its metabolites. The aim of this study was to examine the association between polymorphisms of the DNA repair genes, XRCC1 Arg194Trp, XRCC1 Arg399Gln, XRCC3 Thr241Met, and XPD Lys751Gln, with urinary arsenic profiles and UC. To this end, we conducted a hospital-based case-control study with 324 UC patients and 647 age- and gender-matched non-cancer controls. Genomic DNA was used to examine the genotype of XRCC1 Arg194Trp, XRCC1 Arg399Gln, XRCC3 Thr241Met, and XPD Lys751Gln by PCR-restriction fragment length polymorphism analysis (PCR-RFLP). Urinary arsenic profiles were measured by high performance liquid chromatography (HPLC) linked with hydride generator and atomic absorption spectrometry. The XRCC1 399 Gln/Gln and 194 Arg/Trp and Trp/Trp genotypes were significantly related to UC, and the odds ratio (OR) and 95% confidence interval (95%CI) were 1.68 (1.03-2.75) and 0.66 (0.48-0.90), respectively. Participants with higher total urinary arsenic levels, a higher percentage of inorganic arsenic (InAs%) and a lower percentage of dimethylarsinic acid (DMA%) had a higher OR of UC. Participants carrying XRCC1 risk diplotypes G-C/G-C, A-C/A-C, and A-T/G-T, and who had higher total arsenic levels, higher InAs%, or lower DMA% compared to those with other XRCC1 diplotypes had a higher OR of UC. Our results suggest that the XRCC1 399 Gln/Gln and 194 Arg/Arg DNA repair genes play an important role in poor arsenic methylation capacity, thereby increasing the risk of UC in non-obvious arsenic exposure areas.

  8. Improving the Specificity of the Prostate-Specific Antigen Substrate Glutaryl-Hyp-Ala-Ser-Chg-Gln as a Promoiety.

    PubMed

    Aloysius, Herve; Hu, Longqin

    2015-10-01

    To develop PSA peptide substrates with improved specificity and plasma stability from the known substrate sequence glutaryl-Hyp-Ala-Ser-Chg-Gln, systematic replacements of the N-terminal segment with D-retro-inverso-peptides were performed with the incorporation of 7-amino-4-methylcoumarin (7-AMC) after Gln for convenient fluorometric determination and ranking of the PSA substrate activity. The D-retro-inverso-peptide conjugates with P2-P5 D-amino acid substitutions were moderate but poorer PSA substrates as compared to the original peptide, suggesting that inversion of the amide bonds and/or incorporation of the additional atom as in the urea linker adversely affected PSA binding. However, P5 substitution of Hyp with Ser showed significant improvements in PSA cleavage rate; the resulting AMC conjugate, glutaryl-Ser-Ala-Ser-Chg-Gln-AMC (11), exhibited the fastest PSA cleavage rate of 351 pmol/min/100 nmol PSA. In addition, GABA←mGly-Ala-Ser-Chg-Gln-AMC (conjugate 6) was the second best PSA substrate and released 7-AMC at a rate of 225 pmol/min/100 nmol PSA as compared to 171 pmol/min/100 nmol PSA for the control conjugate glutaryl-Hyp-Ala-Ser-Chg-Gln-AMC. Incubations of selected AMC conjugates with mouse and human plasma revealed that GABA←D-Ser-ψ[NH-CO-NH]-Ala-Ser-Chg-Gln-AMC (5) and GABA←mGly-Ala-Ser-Chg-Gln-AMC (6) were most stable to non-PSA-mediated proteolysis. Our results suggest that the PSA specificity of glutaryl-Hyp-Ala-Ser-Chg-Gln is improved with Ser and mGly substitutions of Hyp at the P5.

  9. Spin guides and spin splitters: waveguide analogies in one-dimensional spin chains.

    PubMed

    Makin, Melissa I; Cole, Jared H; Hill, Charles D; Greentree, Andrew D

    2012-01-01

    Here we show a mapping between waveguide theory and spin-chain transport, opening an alternative approach to solid-state quantum information transport. By applying temporally varying control profiles to a spin chain, we design a virtual waveguide or "spin guide" to conduct spin excitations along defined space-time trajectories of the chain. We show that the concepts of confinement, adiabatic bend loss, and beam splitting can be mapped from optical waveguide theory to spin guides, and hence to "spin splitters." Importantly, the spatial scale of applied control pulses is required to be large compared to the interspin spacing, thereby allowing the design of scalable control architectures.

  10. XRCC1 Arg194Trp and Arg399Gln polymorphisms and arsenic methylation capacity are associated with urothelial carcinoma

    SciTech Connect

    Chiang, Chien-I; Huang, Ya-Li; Chen, Wei-Jen; Shiue, Horng-Sheng; Huang, Chao-Yuan; Pu, Yeong-Shiau; Lin, Ying-Chin; Hsueh, Yu-Mei

    2014-09-15

    The association between DNA repair gene polymorphisms and bladder cancer has been widely studied. However, few studies have examined the correlation between urothelial carcinoma (UC) and arsenic or its metabolites. The aim of this study was to examine the association between polymorphisms of the DNA repair genes, XRCC1 Arg194Trp, XRCC1 Arg399Gln, XRCC3 Thr241Met, and XPD Lys751Gln, with urinary arsenic profiles and UC. To this end, we conducted a hospital-based case–control study with 324 UC patients and 647 age- and gender-matched non-cancer controls. Genomic DNA was used to examine the genotype of XRCC1 Arg194Trp, XRCC1 Arg399Gln, XRCC3 Thr241Met, and XPD Lys751Gln by PCR-restriction fragment length polymorphism analysis (PCR-RFLP). Urinary arsenic profiles were measured by high performance liquid chromatography (HPLC) linked with hydride generator and atomic absorption spectrometry. The XRCC1 399 Gln/Gln and 194 Arg/Trp and Trp/Trp genotypes were significantly related to UC, and the odds ratio (OR) and 95% confidence interval (95%CI) were 1.68 (1.03–2.75) and 0.66 (0.48–0.90), respectively. Participants with higher total urinary arsenic levels, a higher percentage of inorganic arsenic (InAs%) and a lower percentage of dimethylarsinic acid (DMA%) had a higher OR of UC. Participants carrying XRCC1 risk diplotypes G-C/G-C, A-C/A-C, and A-T/G-T, and who had higher total arsenic levels, higher InAs%, or lower DMA% compared to those with other XRCC1 diplotypes had a higher OR of UC. Our results suggest that the XRCC1 399 Gln/Gln and 194 Arg/Arg DNA repair genes play an important role in poor arsenic methylation capacity, thereby increasing the risk of UC in non-obvious arsenic exposure areas. - Highlights: • The XRCC1 399Gln/Gln genotype was significantly associated with increased OR of UC. • The XRCC1 194 Arg/Trp and Trp/Trp genotype had a significantly decreased OR of UC. • Combined effect of the XRCC1 genotypes and poor arsenic methylation capacity on

  11. Low expression level of glnA1 accounts for absence of cell wall associated poly-l-glutamate/glutamine in Mycobacterium smegmatis.

    PubMed

    Tripathi, Deeksha; Kant, Sashi; Garg, Rajni; Bhatnagar, Rakesh

    2015-03-01

    Cell wall associated poly-l-glutamine (PLG) layer synthesis is directly linked to glutamine synthetase (GS) encoded by glnA1 in tuberculosis causing mycobacteria. Avirulent Mycobacterium smegmatis (M. smegmatis) despite of having a glnA1 homolog lacks cell wall associated PLG layer. In the present study, we complemented a ΔglnA1 mutant of Mycobacterium bovis (lack PLG in cell wall) with M. smegmatis glnA1 cloned under M. bovis glnA1 promoter. PLG synthesis was restored in the cell wall of complemented strain. The complemented strain also showed increased resistance to physical stresses such as lysozyme, SDS and increased survival in THP-1 macrophages in comparison to the knockout. Further, in β-galactosidase reporter assay M. smegmatis glnA1 promoter showed ten times less activity as compared to M. bovis glnA1 promoter. GACT-8-11 → TGAC mutations in the M. smegmatis glnA1 promoter restored its activity by 60% as compared to the activity of glnA1 promoter of M. bovis. This mutation also showed increased GS expression and produced cell wall associated PLG in M. smegmatis. The results of this study demonstrate that glnA1 promoter of M. smegmatis accounts for low expression level of GS and apparently responsible for absence of cell wall associated PLG layer. PMID:25637529

  12. Low expression level of glnA1 accounts for absence of cell wall associated poly-l-glutamate/glutamine in Mycobacterium smegmatis.

    PubMed

    Tripathi, Deeksha; Kant, Sashi; Garg, Rajni; Bhatnagar, Rakesh

    2015-03-01

    Cell wall associated poly-l-glutamine (PLG) layer synthesis is directly linked to glutamine synthetase (GS) encoded by glnA1 in tuberculosis causing mycobacteria. Avirulent Mycobacterium smegmatis (M. smegmatis) despite of having a glnA1 homolog lacks cell wall associated PLG layer. In the present study, we complemented a ΔglnA1 mutant of Mycobacterium bovis (lack PLG in cell wall) with M. smegmatis glnA1 cloned under M. bovis glnA1 promoter. PLG synthesis was restored in the cell wall of complemented strain. The complemented strain also showed increased resistance to physical stresses such as lysozyme, SDS and increased survival in THP-1 macrophages in comparison to the knockout. Further, in β-galactosidase reporter assay M. smegmatis glnA1 promoter showed ten times less activity as compared to M. bovis glnA1 promoter. GACT-8-11 → TGAC mutations in the M. smegmatis glnA1 promoter restored its activity by 60% as compared to the activity of glnA1 promoter of M. bovis. This mutation also showed increased GS expression and produced cell wall associated PLG in M. smegmatis. The results of this study demonstrate that glnA1 promoter of M. smegmatis accounts for low expression level of GS and apparently responsible for absence of cell wall associated PLG layer.

  13. Enhanced spin polarization in graphene with spin energy gap induced by spin-orbit coupling and strain

    SciTech Connect

    Liu, Zheng-Fang; Wu, Qing-Ping E-mail: aixichen@ecjtu.jx.cn; Chen, Ai-Xi E-mail: aixichen@ecjtu.jx.cn; Xiao, Xian-Bo; Liu, Nian-Hua

    2014-05-28

    We investigate the possibility of spin polarization in graphene. The result shows that a spin energy gap can be opened in the presence of both spin-orbit coupling and strain. We find that high spin polarization with large spin-polarized current is achieved in the spin energy gap. However, only one of the two modulations is present, no spin polarization can be generated. So the combination of the two modulations provides a way to design tunable spin polarization without need for a magnetic element or an external magnetic field.

  14. TLR7 Gln11Leu single nucleotide polymorphism and susceptibility to cutaneous melanoma

    PubMed Central

    ELEFANTI, LISA; SACCO, GIORGIA; STAGNI, CAMILLA; RASTRELLI, MARCO; MENIN, CHIARA; RUSSO, IRENE; ALAIBAC, MAURO

    2016-01-01

    Cutaneous melanoma is a life-threatening skin cancer. Its incidence is rapidly increasing, and early diagnosis is the main factor able to improve its poor prognosis. Toll-like receptors (TLRs) are transmembrane glycoproteins that recognize pathogen- and damage-associated molecular patterns, against which TLRs activate the innate immune response and initiate the adaptive immune response. Genetic variations of these receptors may alter the immune system, and are involved in evolution and susceptibility to various diseases, including cancer. The aim of the present study was to evaluate whether the presence of TLR7 glutamine (Gln) 11 leucine (Leu) polymorphism confers an increased susceptibility to cutaneous melanoma. For that purpose, a case-control study was performed with 182 melanoma cases and 89 controls. To highlight the possible association between the aforementioned polymorphism and the susceptibility to melanoma, 93 cases of single melanoma and 89 cases of multiple primary melanoma (MPM) were compared in the present study. Since the TLR7 gene is localized on the chromosome X, the allelic frequency of the Gln11Leu polymorphism was analyzed separately in males and females. The distribution of allele frequencies between melanoma cases and controls (P=0.245) and between single melanoma and MPM cases (P=0.482) was not significant. Therefore, the present results do not suggest an association between TLR7 Gln11Leu polymorphism and susceptibility to cutaneous melanoma. Further studies are required to analyze the influence of other TLR polymorphisms on the susceptibility to malignant melanoma and the involvement of innate immunity in this malignancy. PMID:27347137

  15. Spectroscopic Identification of Cyclic Imide b2-Ions from Peptides Containing Gln and Asn Residues

    NASA Astrophysics Data System (ADS)

    Grzetic, Josipa; Oomens, Jos

    2013-08-01

    In mass-spectrometry based peptide sequencing, formation of b- and y-type fragments by cleavage of the amide C-N bond constitutes the main dissociation pathway of protonated peptides under low-energy collision induced dissociation (CID). The structure of the b 2 fragment ion from peptides containing glutamine (Gln) and asparagine (Asn) residues is investigated here by infrared ion spectroscopy using the free electron laser FELIX. The spectra are compared with theoretical spectra calculated using density functional theory for different possible isomeric structures as well as to experimental spectra of synthesized model systems. The spectra unambiguously show that the b2-ions do not possess the common oxazolone structure, nor do they possess the alternative diketopiperazine structure. Instead, cyclic imide structures are formed through nucleophilic attack by the amide nitrogen atom of the Gln and Asn side chains. The alternative pathway involving nucleophilic attack from the side-chain amide oxygen atom leading to cyclic isoimide structures, which had been suggested by several authors, can clearly be excluded based on the present IR spectra. This mechanism is perhaps surprising as the amide oxygen atom is considered to be the better nucleophile; however, computations show that the products formed via attack by the amide nitrogen are considerably lower in energy. Hence, b2-ions with Asn or Gln in the second position form structures with a five-membered succinimide or a six-membered glutarimide ring, respectively. b2-Ions formed from peptides with Asn in the first position are spectroscopically shown to possess the classical oxazolone structure.

  16. Relative Rates of Amino Acid Import via the ABC Transporter GlnPQ Determine the Growth Performance of Lactococcus lactis

    PubMed Central

    Fulyani, Faizah; Schuurman-Wolters, Gea K.; Slotboom, Dirk-Jan

    2015-01-01

    ABSTRACT The GlnPQ transporter from Lactococcus lactis has the remarkable feature of having two substrate-binding domains (SBDs) fused to the N terminus of the transmembrane domain (TMD), and thus four SBDs are present in the homodimeric complex. Although X-ray structures and ligand binding data are available for both SBDs, little is known of how different amino acids compete with each other for transport via GlnPQ. Here we show GlnPQ has a broader substrate specificity than previously thought, with the ability to take up asparagine, glutamine, and glutamic acid, albeit via different routes and with different affinities. Asparagine and glutamine compete with each other at the level of binding to SBD1 and SBD2 (with differences in dissociation constant), but at the same time SBD1 and SBD2 compete with each other at the level of interaction with the translocator domain (with differences in affinity constant and rate of transport). Although glutamine transport via SBD1 is outcompeted by physiological concentrations of asparagine, SBD2 ensures high rates of import of the essential amino acid glutamine. Taken together, this study demonstrates that even in the presence of competing asparagine concentrations, GlnPQ has a high capacity to transport glutamine, which matches the high needs of the cell for glutamine and glutamate. IMPORTANCE GlnPQ is an ATP-binding cassette (ABC) transporter for glutamine, glutamic acid, and asparagine. The system is essential in various Gram-positive bacteria, including L. lactis and several pathogens. Here we show how the amino acids compete with each other for binding to the multiple SBDs of GlnPQ and how these SBDs compete with each other for substrate delivery to the transporter. Overall, our results show that GlnPQ has evolved to transport diverse substrates via different paths and to optimally acquire the abundant and essential amino acid glutamine. PMID:26553850

  17. Glutamyl-gamma-boronate inhibitors of bacterial Glu-tRNA(Gln) amidotransferase.

    PubMed

    Decicco, C P; Nelson, D J; Luo, Y; Shen, L; Horiuchi, K Y; Amsler, K M; Foster, L A; Spitz, S M; Merrill, J J; Sizemore, C F; Rogers, K C; Copeland, R A; Harpel, M R

    2001-09-17

    Analogues of glutamyl-gamma-boronate (1) were synthesized as mechanism-based inhibitors of bacterial Glu-tRNA(Gln) amidotransferase (Glu-AdT) and were designed to engage a putative catalytic serine nucleophile required for the glutaminase activity of the enzyme. Although 1 provides potent enzyme inhibition, structure-activity studies revealed a narrow range of tolerated chemical changes that maintained activity. Nonetheless, growth inhibition of organisms that require Glu-AdT by the most potent enzyme inhibitors appears to validate mechanism-based inhibitor design of Glu-AdT as an approach to antimicrobial development.

  18. Glutamyl-gamma-boronate inhibitors of bacterial Glu-tRNA(Gln) amidotransferase.

    PubMed

    Decicco, C P; Nelson, D J; Luo, Y; Shen, L; Horiuchi, K Y; Amsler, K M; Foster, L A; Spitz, S M; Merrill, J J; Sizemore, C F; Rogers, K C; Copeland, R A; Harpel, M R

    2001-09-17

    Analogues of glutamyl-gamma-boronate (1) were synthesized as mechanism-based inhibitors of bacterial Glu-tRNA(Gln) amidotransferase (Glu-AdT) and were designed to engage a putative catalytic serine nucleophile required for the glutaminase activity of the enzyme. Although 1 provides potent enzyme inhibition, structure-activity studies revealed a narrow range of tolerated chemical changes that maintained activity. Nonetheless, growth inhibition of organisms that require Glu-AdT by the most potent enzyme inhibitors appears to validate mechanism-based inhibitor design of Glu-AdT as an approach to antimicrobial development. PMID:11549469

  19. Structural analysis of APOB variants, p.(Arg3527Gln), p.(Arg1164Thr) and p.(Gln4494del), causing Familial Hypercholesterolaemia provides novel insights into variant pathogenicity

    PubMed Central

    Fernández-Higuero, J. A.; Etxebarria, A.; Benito-Vicente, A.; Alves, A. C.; Arrondo, J. L. R.; Ostolaza, H.; Bourbon, M.; Martin, C.

    2015-01-01

    Familial hypercholesterolaemia (FH) is an inherited autosomal dominant disorder resulting from defects in the low-density lipoprotein receptor (LDLR), in the apolipoprotein B (APOB) or in the proprotein convertase subtilisin/kexin type 9 (PCSK9) genes. In the majority of the cases FH is caused by mutations occurring within LDLR, while only few mutations in APOB and PCSK9 have been proved to cause disease. p.(Arg3527Gln) was the first mutation in APOB being identified and characterized. Recently two novel pathogenic APOB variants have been described: p.(Arg1164Thr) and p.(Gln4494del) showing impaired LDLR binding capacity, and diminished LDL uptake. The objective of this work was to analyse the structure of p.(Arg1164Thr) and p.(Gln4494del) variants to gain insight into their pathogenicity. Secondary structure of the human ApoB100 has been investigated by infrared spectroscopy (IR) and LDL particle size both by dynamic light scattering (DLS) and electron microscopy. The results show differences in secondary structure and/or in particle size of p.(Arg1164Thr) and p.(Gln4494del) variants compared with wild type. We conclude that these changes underlie the defective binding and uptake of p.(Arg1164Thr) and p.(Gln4494del) variants. Our study reveals that structural studies on pathogenic variants of APOB may provide very useful information to understand their role in FH disease. PMID:26643808

  20. Asthma: Gln27Glu and Arg16Gly polymorphisms of the beta2-adrenergic receptor gene as risk factors

    PubMed Central

    2014-01-01

    Background Asthma is caused by both environmental and genetic factors. The ADRB2 gene, which encodes the beta 2-adrenergic receptor, is one of the most extensively studied genes with respect to asthma prevalence and severity. The Arg16Gly (+46A > G) and Gln27Glu (+79C > G) polymorphisms in the ADRB2 gene cause changes in the amino acids flanking the receptor ligand site, altering the response to bronchodilators and the risk of asthma through complex pathways. The ADRB2 polymorphisms affect beta-adrenergic bronchodilator action and are a tool to identify at-risk populations. Objective To determine the frequency of these two polymorphisms in allergic asthma patients and healthy subjects and to correlate these data with the occurrence and severity of asthma. Methods Eighty-eight allergic asthma patients and 141 healthy subjects were included in this study. The ADRB2 polymorphisms were analyzed using the amplification-refractory mutation system – polymerase chain reaction (ARMS-PCR) technique. The statistical analysis was performed with the SPSS 21.0 software using the Fisher’s Exact and χ2 tests. Results The ADRB2 polymorphisms were associated with asthma occurrence. The Arg16Arg, Gln27Gln and Gln27Glu genotypes were risk factors; the odds ratios were 6.782 (CI = 3.07 to 16.03), 2.120 (CI = 1.22 to 3.71) and 8.096 (CI = 3.90 to 17.77), respectively. For the Gly16Gly and Glu27Glu genotypes, the odds ratios were 0.312 (CI = 0.17 to 0.56) and 0.084 (CI = 0.04 to 0.17), respectively. The haplotype analysis showed that there were associations between the following groups: Arg16Arg-Gln27Gln (OR = 5.108, CI = 1.82 to 16.37), Gly16Gly-Glu27Glu (OR = 2.816, CI = 1.25 to 6.54), Arg16Gly-Gln27Glu (OR = 0.048, CI = 0.01 to 0.14) and Gly16Gly-Gln27Glu (OR = 0.1036, CI = 0.02 to 0.39). The polymorphism Gln27Glu was associated with asthma severity, as the Gln27Gln genotype was a risk factor for severe asthma (OR

  1. Effects of Ala-Gln feeding strategies on growth, metabolism, and crowding stress resistance of juvenile Cyprinus carpio var. Jian.

    PubMed

    Chen, Xiu-Mei; Guo, Gui-Liang; Sun, Li; Yang, Qiu-Shi; Wang, Gui-Qin; Qin, Gui-Xin; Zhang, Dong-Ming

    2016-04-01

    The present study was conducted to evaluate the effects of different L-alanyl-l-glutamine (Ala-Gln) feeding strategies on the growth performance, metabolism and crowding stress resistance related parameters in juvenile Jian carp (Cyprinus carpio var. Jian) under crowded condition (80 g/L). Juvenile Jian carp (initial weight 26.1 ± 0.6 g) were distributed into five groups which fed with graded concentrations (0% or 1.0%) of Ala-Gln for eight weeks. Control group (I, 0/0) fed with control diet (0% Ala-Gln) throughout the feeding trial. The other four groups employed different control and experimental diet feeding strategies ranging from two weeks control diet fed and two weeks experimental diet (1% Ala-Gln) fed (II, 0/2) to eight weeks experimental diet fed (V, 4/4). Results revealed that Mean weight gain (MEG) under all different feeding strategies of Ala-Gln were significantly higher than that of the control group (p < 0.05), and MEG of group II (201.90%) was even higher than that of group IV (184.70%). Liver glycogen and blood total protein of groups II, III and V were significantly higher than that in groups I and IV (p < 0.05). The highest level of serum thyroxine (10.07 ng/ml), insulin-like growth factor-I (52.40 ng/ml) and insulin (9.73 μ IU/mL) were observed in group V. However, diet supplemented with Ala-Gln did not affect the levels of serum glucose, cortisol and catecholamine in fish. The mRNA expression of GR1a, GR1b and GR2 were also significantly changed in Ala-Gln supplementation groups compared with control group (p < 0.05). After fish intraperitoneally injected with virulent Aeromonas hydrophila, the fish survival rates were significantly increased in all Ala-Gln supplementation groups compared with control group (p < 0.05). Results from the present experiment showed the importance of dietary supplementation of Ala-Gln in benefaction of the growth performance, metabolism and crowding stress resistance in Jian carp breeding. The

  2. Beta-2 adrenergic receptor gene polymorphisms Gln27Glu, Arg16Gly in patients with heart failure

    PubMed Central

    Mansur, Alfredo José; Fontes, Rosana Seleri; Canzi, Regina Airoldi; Nishimura, Raphael; Alencar, Airlane Pereira; de Lima, Antonio Carlos Pedroso; Krieger, José Eduardo; Pereira, Alexandre Costa

    2009-01-01

    Background - Beta-2 adrenergic receptor gene polymorphisms Gln27Glu, Arg16Gly and Thr164Ile were suggested to have an effect in heart failure. We evaluated these polymorphisms relative to clinical characteristics and prognosis of alarge cohort of patients with heart failure of different etiologies. Methods - We studied 501 patients with heart failure of different etiologies. Mean age was 58 years (standard deviation 14.4 years), 298 (60%) were men. Polymorphisms were identified by polymerase chain reaction-restriction fragment length polymorphism. Results - During the mean follow-up of 12.6 months (standard deviation 10.3 months), 188 (38%) patients died. Distribution of genotypes of polymorphism Arg16Gly was different relative to body mass index (χ2 = 9.797;p = 0.04). Overall the probability of survival was not significantly predicted by genotypes of Gln27Glu, Arg16Gly, or Thr164Ile. Allele and haplotype analysis also did not disclose any significant difference regarding mortality. Exploratory analysis through classification trees pointed towards a potential association between the Gln27Glu polymorphism and mortality in older individuals. Conclusion - In this study sample, we were not able to demonstrate an overall influence of polymorphisms Gln27Glu and Arg16Gly of beta-2 receptor gene on prognosis. Nevertheless, Gln27Glu polymorphism may have a potential predictive value in older individuals. PMID:19886995

  3. Nitrogen regulator GlnR controls uptake and utilization of non-phosphotransferase-system carbon sources in actinomycetes.

    PubMed

    Liao, Cheng-Heng; Yao, Lili; Xu, Ya; Liu, Wei-Bing; Zhou, Ying; Ye, Bang-Ce

    2015-12-22

    The regulatory mechanisms underlying the uptake and utilization of multiple types of carbohydrates in actinomycetes remain poorly understood. In this study, we show that GlnR (central regulator of nitrogen metabolism) serves as a universal regulator of nitrogen metabolism and plays an important, previously unknown role in controlling the transport of non-phosphotransferase-system (PTS) carbon sources in actinomycetes. It was observed that GlnR can directly interact with the promoters of most (13 of 20) carbohydrate ATP-binding cassette (ABC) transporter loci and can activate the transcription of these genes in response to nitrogen availability in industrial, erythromycin-producing Saccharopolyspora erythraea. Deletion of the glnR gene resulted in severe growth retardation under the culture conditions used, with select ABC-transported carbohydrates (maltose, sorbitol, mannitol, cellobiose, trehalose, or mannose) used as the sole carbon source. Furthermore, we found that GlnR-mediated regulation of carbohydrate transport was highly conserved in actinomycetes. These results demonstrate that GlnR serves a role beyond nitrogen metabolism, mediating critical functions in carbon metabolism and crosstalk of nitrogen- and carbon-metabolism pathways in response to the nutritional states of cells. These findings provide insights into the molecular regulation of transport and metabolism of non-PTS carbohydrates and reveal potential applications for the cofermentation of biomass-derived sugars in the production of biofuels and bio-based chemicals.

  4. Nitrogen regulator GlnR controls uptake and utilization of non-phosphotransferase-system carbon sources in actinomycetes.

    PubMed

    Liao, Cheng-Heng; Yao, Lili; Xu, Ya; Liu, Wei-Bing; Zhou, Ying; Ye, Bang-Ce

    2015-12-22

    The regulatory mechanisms underlying the uptake and utilization of multiple types of carbohydrates in actinomycetes remain poorly understood. In this study, we show that GlnR (central regulator of nitrogen metabolism) serves as a universal regulator of nitrogen metabolism and plays an important, previously unknown role in controlling the transport of non-phosphotransferase-system (PTS) carbon sources in actinomycetes. It was observed that GlnR can directly interact with the promoters of most (13 of 20) carbohydrate ATP-binding cassette (ABC) transporter loci and can activate the transcription of these genes in response to nitrogen availability in industrial, erythromycin-producing Saccharopolyspora erythraea. Deletion of the glnR gene resulted in severe growth retardation under the culture conditions used, with select ABC-transported carbohydrates (maltose, sorbitol, mannitol, cellobiose, trehalose, or mannose) used as the sole carbon source. Furthermore, we found that GlnR-mediated regulation of carbohydrate transport was highly conserved in actinomycetes. These results demonstrate that GlnR serves a role beyond nitrogen metabolism, mediating critical functions in carbon metabolism and crosstalk of nitrogen- and carbon-metabolism pathways in response to the nutritional states of cells. These findings provide insights into the molecular regulation of transport and metabolism of non-PTS carbohydrates and reveal potential applications for the cofermentation of biomass-derived sugars in the production of biofuels and bio-based chemicals. PMID:26644570

  5. Leptin receptor gene Gln223Arg polymorphism is not associated with obesity and metabolic syndrome in Turkish children.

    PubMed

    Komşu-Ornek, Zuhal; Demirel, Fatma; Dursun, Ahmet; Ermiş, Bahri; Pişkin, Etem; Bideci, Aysun

    2012-01-01

    The aim of the study was to investigate the relationship between leptin receptor gene (LEPR) Gln223Arg polymorphism and obesity in Turkish children. Ninety-two obese and 99 lean children (between 5-15 years) were included in the study. Twenty-three of the obese children were diagnosed with metabolic syndrome. Blood samples were collected for morning fasting blood glucose, insulin, leptin, and lipid level measurements. LEPR Gln223Arg polymorphism was analyzed by restriction fragment length polymorphism. Significant differences were observed in anthropometric measurements, fasting blood glucose, insulin, leptin, and lipid levels between obese and lean children. Serum leptin levels were markedly higher in obese children. No significant association was noted between Gln223Arg polymorphism and serum leptin, insulin and lipid levels. There were no differences in the genotype frequencies or allele distribution for Gln223Arg polymorphism among obese, obese with metabolic syndrome and lean children. Our findings suggest that there is no association between Gln223Arg polymorphism and obesity in Turkish children.

  6. Nitrogen regulator GlnR controls uptake and utilization of non-phosphotransferase-system carbon sources in actinomycetes

    PubMed Central

    Liao, Cheng-Heng; Yao, Lili; Xu, Ya; Liu, Wei-Bing; Zhou, Ying; Ye, Bang-Ce

    2015-01-01

    The regulatory mechanisms underlying the uptake and utilization of multiple types of carbohydrates in actinomycetes remain poorly understood. In this study, we show that GlnR (central regulator of nitrogen metabolism) serves as a universal regulator of nitrogen metabolism and plays an important, previously unknown role in controlling the transport of non-phosphotransferase-system (PTS) carbon sources in actinomycetes. It was observed that GlnR can directly interact with the promoters of most (13 of 20) carbohydrate ATP-binding cassette (ABC) transporter loci and can activate the transcription of these genes in response to nitrogen availability in industrial, erythromycin-producing Saccharopolyspora erythraea. Deletion of the glnR gene resulted in severe growth retardation under the culture conditions used, with select ABC-transported carbohydrates (maltose, sorbitol, mannitol, cellobiose, trehalose, or mannose) used as the sole carbon source. Furthermore, we found that GlnR-mediated regulation of carbohydrate transport was highly conserved in actinomycetes. These results demonstrate that GlnR serves a role beyond nitrogen metabolism, mediating critical functions in carbon metabolism and crosstalk of nitrogen- and carbon-metabolism pathways in response to the nutritional states of cells. These findings provide insights into the molecular regulation of transport and metabolism of non-PTS carbohydrates and reveal potential applications for the cofermentation of biomass-derived sugars in the production of biofuels and bio-based chemicals. PMID:26644570

  7. Co-Expression of Wild-Type P2X7R with Gln460Arg Variant Alters Receptor Function

    PubMed Central

    Aprile-Garcia, Fernando; Metzger, Michael W.; Paez-Pereda, Marcelo; Stadler, Herbert; Acuña, Matías; Liberman, Ana C.; Senin, Sergio A.; Gerez, Juan; Hoijman, Esteban; Refojo, Damian; Mitkovski, Mišo; Panhuysen, Markus; Stühmer, Walter; Holsboer, Florian; Deussing, Jan M.; Arzt, Eduardo

    2016-01-01

    The P2X7 receptor is a member of the P2X family of ligand-gated ion channels. A single-nucleotide polymorphism leading to a glutamine (Gln) by arginine (Arg) substitution at codon 460 of the purinergic P2X7 receptor (P2X7R) has been associated with mood disorders. No change in function (loss or gain) has been described for this SNP so far. Here we show that although the P2X7R-Gln460Arg variant per se is not compromised in its function, co-expression of wild-type P2X7R with P2X7R-Gln460Arg impairs receptor function with respect to calcium influx, channel currents and intracellular signaling in vitro. Moreover, co-immunoprecipitation and FRET studies show that the P2X7R-Gln460Arg variant physically interacts with P2X7R-WT. Specific silencing of either the normal or polymorphic variant rescues the heterozygous loss of function phenotype and restores normal function. The described loss of function due to co-expression, unique for mutations in the P2RX7 gene so far, explains the mechanism by which the P2X7R-Gln460Arg variant affects the normal function of the channel and may represent a mechanism of action for other mutations. PMID:26986975

  8. Association of XRCC1 Arg399Gln polymorphism with bladder cancer susceptibility: a meta-analysis.

    PubMed

    Yang, Dengfeng; Liu, Chuan; Shi, Jing; Wang, Ning; Du, Xiaobo; Yin, Qinghua; Wang, Yajie

    2014-01-15

    Genetic variations in DNA repair genes are thought to modify DNA repair capacity and may to be related to cancer susceptibility. However, epidemiological study results have been inconsistent. In this meta-analysis, we assessed 24 case-control studies of association between the X-ray repair cross complementing group 1 (XRCC1) Arg399Gln polymorphism and bladder cancer susceptibility in the general population and in Asian and non-Asian subgroups. A moderately significant association with bladder cancer risk was found for AG vs GG (OR=1.110, 95% CI=1.018-1.210). No significant associations with bladder cancer risk were found for AA vs GG (OR=0.942, 95% CI=0.823-1.077), the dominant model AA/AG vs GG (OR=1.075, 95% CI=0.990-1.167) and the recessive model AA vs AG/GG(OR=0.890, 95% CI=0.788-1.005). In subgroup analysis, a moderately significant association was also found for AG vs GG (OR=1.091, 95% CI=1.008-1.180) in non-Asian subgroup. The analysis suggests that the XRCC1 Arg399Gln polymorphism might be a moderate risk factor for bladder cancer, especially in non-Asian population.

  9. Spin-Wave Diode

    NASA Astrophysics Data System (ADS)

    Lan, Jin; Yu, Weichao; Wu, Ruqian; Xiao, Jiang

    2015-10-01

    A diode, a device allowing unidirectional signal transmission, is a fundamental element of logic structures, and it lies at the heart of modern information systems. The spin wave or magnon, representing a collective quasiparticle excitation of the magnetic order in magnetic materials, is a promising candidate for an information carrier for the next-generation energy-saving technologies. Here, we propose a scalable and reprogrammable pure spin-wave logic hardware architecture using domain walls and surface anisotropy stripes as waveguides on a single magnetic wafer. We demonstrate theoretically the design principle of the simplest logic component, a spin-wave diode, utilizing the chiral bound states in a magnetic domain wall with a Dzyaloshinskii-Moriya interaction, and confirm its performance through micromagnetic simulations. Our findings open a new vista for realizing different types of pure spin-wave logic components and finally achieving an energy-efficient and hardware-reprogrammable spin-wave computer.

  10. CheMPS2: A free open-source spin-adapted implementation of the density matrix renormalization group for ab initio quantum chemistry

    NASA Astrophysics Data System (ADS)

    Wouters, Sebastian; Poelmans, Ward; Ayers, Paul W.; Van Neck, Dimitri

    2014-06-01

    The density matrix renormalization group (DMRG) has become an indispensable numerical tool to find exact eigenstates of finite-size quantum systems with strong correlation. In the fields of condensed matter, nuclear structure and molecular electronic structure, it has significantly extended the system sizes that can be handled compared to full configuration interaction, without losing numerical accuracy. For quantum chemistry (QC), the most efficient implementations of DMRG require the incorporation of particle number, spin and point group symmetries in the underlying matrix product state (MPS) ansatz, as well as the use of so-called complementary operators. The symmetries introduce a sparse block structure in the MPS ansatz and in the intermediary contracted tensors. If a symmetry is non-abelian, the Wigner-Eckart theorem allows to factorize a tensor into a Clebsch-Gordan coefficient and a reduced tensor. In addition, the fermion signs have to be carefully tracked. Because of these challenges, implementing DMRG efficiently for QC is not straightforward. Efficient and freely available implementations are therefore highly desired. In this work we present CheMPS2, our free open-source spin-adapted implementation of DMRG for ab initio QC. Around CheMPS2, we have implemented the augmented Hessian Newton-Raphson complete active space self-consistent field method, with exact Hessian. The bond dissociation curves of the 12 lowest states of the carbon dimer were obtained at the DMRG(28 orbitals, 12 electrons, DSU(2) = 2500)/cc-pVDZ level of theory. The contribution of 1 s core correlation to the X1Σg+ bond dissociation curve of the carbon dimer was estimated by comparing energies at the DMRG(36o, 12e, DSU(2) = 2500)/cc-pCVDZ and DMRG-SCF(34o, 8e, DSU(2) = 2500)/cc-pCVDZ levels of theory.

  11. Theory of open quantum systems with bath of electrons and phonons and spins: Many-dissipaton density matrixes approach

    SciTech Connect

    Yan, YiJing

    2014-02-07

    This work establishes a strongly correlated system-and-bath dynamics theory, the many-dissipaton density operators formalism. It puts forward a quasi-particle picture for environmental influences. This picture unifies the physical descriptions and algebraic treatments on three distinct classes of quantum environments, electron bath, phonon bath, and two-level spin or exciton bath, as their participating in quantum dissipation processes. Dynamical variables for theoretical description are no longer just the reduced density matrix for system, but remarkably also those for quasi-particles of bath. The present theoretical formalism offers efficient and accurate means for the study of steady-state (nonequilibrium and equilibrium) and real-time dynamical properties of both systems and hybridizing environments. It further provides universal evaluations, exact in principle, on various correlation functions, including even those of environmental degrees of freedom in coupling with systems. Induced environmental dynamics could be reflected directly in experimentally measurable quantities, such as Fano resonances and quantum transport current shot noise statistics.

  12. Post-translational Serine/Threonine Phosphorylation and Lysine Acetylation: A Novel Regulatory Aspect of the Global Nitrogen Response Regulator GlnR in S. coelicolor M145.

    PubMed

    Amin, Rafat; Franz-Wachtel, Mirita; Tiffert, Yvonne; Heberer, Martin; Meky, Mohamed; Ahmed, Yousra; Matthews, Arne; Krysenko, Sergii; Jakobi, Marco; Hinder, Markus; Moore, Jane; Okoniewski, Nicole; Maček, Boris; Wohlleben, Wolfgang; Bera, Agnieszka

    2016-01-01

    Soil-dwelling Streptomyces bacteria such as S.coelicolor have to constantly adapt to the nitrogen (N) availability in their habitat. Thus, strict transcriptional and post-translational control of the N-assimilation is fundamental for survival of this species. GlnR is a global response regulator that controls transcription of the genes related to the N-assimilation in S. coelicolor and other members of the Actinomycetales. GlnR represents an atypical orphan response regulator that is not activated by the phosphorylation of the conserved aspartate residue (Asp 50). We have applied transcriptional analysis, LC-MS/MS analysis and electrophoretic mobility shift assays (EMSAs) to understand the regulation of GlnR in S. coelicolor M145. The expression of glnR and GlnR-target genes was revisited under four different N-defined conditions and a complex N-rich condition. Although, the expression of selected GlnR-target genes was strongly responsive to changing N-concentrations, the glnR expression itself was independent of the N-availability. Using LC-MS/MSanalysis we demonstrated that GlnR was post-translationally modified. The post-translational modifications of GlnR comprise phosphorylation of the serine/threonine residues and acetylation of lysine residues. In the complex N-rich medium GlnR was phosphorylated on six serine/threonine residues and acetylated on one lysine residue. Under defined N-excess conditions only two phosphorylated residues were detected whereas under defined N-limiting conditions no phosphorylation was observed. GlnR phosphorylation is thus clearly correlated with N-rich conditions. Furthermore, GlnR was acetylated on four lysine residues independently of the N-concentration in the defined media and on only one lysine residue in the complex N-rich medium. Using EMSAs we demonstrated that phosphorylation inhibited the binding of GlnR to its targets genes, whereas acetylation had little influence on the formation of GlnR-DNA complex. This study clearly

  13. Post-translational Serine/Threonine Phosphorylation and Lysine Acetylation: A Novel Regulatory Aspect of the Global Nitrogen Response Regulator GlnR in S. coelicolor M145

    PubMed Central

    Amin, Rafat; Franz-Wachtel, Mirita; Tiffert, Yvonne; Heberer, Martin; Meky, Mohamed; Ahmed, Yousra; Matthews, Arne; Krysenko, Sergii; Jakobi, Marco; Hinder, Markus; Moore, Jane; Okoniewski, Nicole; Maček, Boris; Wohlleben, Wolfgang; Bera, Agnieszka

    2016-01-01

    Soil-dwelling Streptomyces bacteria such as S.coelicolor have to constantly adapt to the nitrogen (N) availability in their habitat. Thus, strict transcriptional and post-translational control of the N-assimilation is fundamental for survival of this species. GlnR is a global response regulator that controls transcription of the genes related to the N-assimilation in S. coelicolor and other members of the Actinomycetales. GlnR represents an atypical orphan response regulator that is not activated by the phosphorylation of the conserved aspartate residue (Asp 50). We have applied transcriptional analysis, LC-MS/MS analysis and electrophoretic mobility shift assays (EMSAs) to understand the regulation of GlnR in S. coelicolor M145. The expression of glnR and GlnR-target genes was revisited under four different N-defined conditions and a complex N-rich condition. Although, the expression of selected GlnR-target genes was strongly responsive to changing N-concentrations, the glnR expression itself was independent of the N-availability. Using LC-MS/MSanalysis we demonstrated that GlnR was post-translationally modified. The post-translational modifications of GlnR comprise phosphorylation of the serine/threonine residues and acetylation of lysine residues. In the complex N-rich medium GlnR was phosphorylated on six serine/threonine residues and acetylated on one lysine residue. Under defined N-excess conditions only two phosphorylated residues were detected whereas under defined N-limiting conditions no phosphorylation was observed. GlnR phosphorylation is thus clearly correlated with N-rich conditions. Furthermore, GlnR was acetylated on four lysine residues independently of the N-concentration in the defined media and on only one lysine residue in the complex N-rich medium. Using EMSAs we demonstrated that phosphorylation inhibited the binding of GlnR to its targets genes, whereas acetylation had little influence on the formation of GlnR-DNA complex. This study clearly

  14. Openings

    PubMed Central

    Selwyn, Peter A.

    2015-01-01

    Reviewing his clinic patient schedule for the day, a physician reflects on the history of a young woman he has been caring for over the past 9 years. What starts out as a routine visit then turns into a unique opening for communication and connection. A chance glimpse out the window of the exam room leads to a deeper meditation on parenthood, survival, and healing, not only for the patient but also for the physician. How many missed opportunities have we all had, without even realizing it, to allow this kind of fleeting but profound opening? PMID:26195687

  15. The Role of Gln61 in HRas GTP Hydrolysis: A Quantum Mechanics/Molecular Mechanics Study

    PubMed Central

    Martín-García, Fernando; Mendieta-Moreno, Jesús Ignacio; López-Viñas, Eduardo; Gómez-Puertas, Paulino; Mendieta, Jesús

    2012-01-01

    Activation of the water molecule involved in GTP hydrolysis within the HRas⋅RasGAP system is analyzed using a tailored approach based on hybrid quantum mechanics/molecular mechanics (QM/MM) simulation. A new path emerges: transfer of a proton from the attacking water molecule to a second water molecule, then a different proton is transferred from this second water molecule to the GTP. Gln61 will stabilize the transient OH− and H3O+ molecules thus generated. This newly proposed mechanism was generated by using, for the first time to our knowledge, the entire HRas-RasGAP protein complex in a QM/MM simulation context. It also offers a rational explanation for previous experimental results regarding the decrease of GTPase rate found in the HRas Q61A mutant and the increase exhibited by the HRas Q61E mutant. PMID:22225809

  16. Hydrodynamics of spin-polarized transport and spin pendulum

    SciTech Connect

    Gurzhi, R. N. Kalinenko, A. N.; Kopeliovich, A. I.; Pyshkin, P. V.; Yanovsky, A. V.

    2007-07-15

    The dynamics of a nonequilibrium spin system dominated by collisions preserving the total quasimomentum of the interacting electrons and quasiparticles is considered. An analysis of the derived hydrodynamic equations shows that weakly attenuated spin-polarization waves associated with an oscillating drift current can exist in a magnetically inhomogeneous conducting ring. Spin-polarized transport in a ballistic regime of wave propagation through a conductor is also considered, and a simple method is proposed for distinguishing these waves from spin and current oscillations that develop in the hydrodynamic regime. It is shown that a potential difference arises between the leads of an open nonuniformly spin-polarized conductor as a manifestation of spin polarization of electron density. This spin-mediated electrical phenomenon occurs in both hydrodynamic and diffusive limits.

  17. Tensor spin observables and spin stucture at low Q2

    SciTech Connect

    Slifer, Karl J.

    2015-04-01

    We discuss recent spin structure results from Jefferson Lab, and outline an emerging program to study tensor spin observables using solid deuteron targets. These new experiments open the potential to study hidden color, the tensor nature of short range correlations, and to probe for exotic gluonic states.

  18. Geometrical spin symmetry and spin

    SciTech Connect

    Pestov, I. B.

    2011-07-15

    Unification of General Theory of Relativity and Quantum Mechanics leads to General Quantum Mechanics which includes into itself spindynamics as a theory of spin phenomena. The key concepts of spindynamics are geometrical spin symmetry and the spin field (space of defining representation of spin symmetry). The essence of spin is the bipolar structure of geometrical spin symmetry induced by the gravitational potential. The bipolar structure provides a natural derivation of the equations of spindynamics. Spindynamics involves all phenomena connected with spin and provides new understanding of the strong interaction.

  19. Molecular analysis and regulation of the glnA gene of the gram-positive anaerobe Clostridium acetobutylicum.

    PubMed Central

    Janssen, P J; Jones, W A; Jones, D T; Woods, D R

    1988-01-01

    The nucleotide sequence of a 2.0-kilobase DNA segment containing the Clostridium acetobutylicum glnA gene was determined. The upstream region of the glnA gene contained two putative extended promoter consensus sequences (p1 and p2), characteristic of gram-positive bacteria. A third putative extended gram-positive promoter consensus sequence (p3), oriented towards the glnA gene, was detected downstream of the structural gene. The sequences containing the proposed promoter regions p1 and p2 or p3 were shown to have promoter activity by subcloning into promoter probe vectors. The complete amino acid sequence (444 residues) of the C. acetobutylicum glutamine synthetase (GS) was deduced, and comparisons were made with the reported amino acid sequences of GS from other organisms. To determine whether the putative promoter p3 and a downstream region with an extensive stretch of inverted repeat sequences were involved in regulation of C. acetobutylicum glnA gene expression by nitrogen in Escherichia coli, deletion plasmids were constructed lacking p3 and various downstream sequences. Deletion of the putative promoter p3 and downstream inverted repeat sequences affected the regulation of GS and reduced the levels of GS approximately fivefold under nitrogen-limiting conditions but did not affect the repression of GS levels in cells grown under nitrogen-excess conditions. PMID:2891680

  20. Structure and thermodynamics of effector molecule binding to the nitrogen signal transduction PII protein GlnZ from Azospirillum brasilense.

    PubMed

    Truan, Daphné; Bjelić, Saša; Li, Xiao-Dan; Winkler, Fritz K

    2014-07-29

    The trimeric PII signal transduction proteins regulate the function of a variety of target proteins predominantly involved in nitrogen metabolism. ATP, ADP and 2-oxoglutarate (2-OG) are key effector molecules influencing PII binding to targets. Studies of PII proteins have established that the 20-residue T-loop plays a central role in effector sensing and target binding. However, the specific effects of effector binding on T-loop conformation have remained poorly documented. We present eight crystal structures of the Azospirillum brasilense PII protein GlnZ, six of which are cocrystallized and liganded with ADP or ATP. We find that interaction with the diphosphate moiety of bound ADP constrains the N-terminal part of the T-loop in a characteristic way that is maintained in ADP-promoted complexes with target proteins. In contrast, the interactions with the triphosphate moiety in ATP complexes are much more variable and no single predominant interaction mode is apparent except for the ternary MgATP/2-OG complex. These conclusions can be extended to most investigated PII proteins of the GlnB/GlnK subfamily. Unlike reported for other PII proteins, microcalorimetry reveals no cooperativity between the three binding sites of GlnZ trimers for any of the three effectors under carefully controlled experimental conditions.

  1. Bovine rhodopsin: amino acid substitutions Asp-83----Asn and Glu-134----Gln prevent activation of cyclic GMP phosphodiesterase.

    PubMed

    Gurevich, V V; Zozulya, S A; Zerf, E P; Pokrovskaya, I D; Obukhova, T A; Garnovskaya, M N; Dumler, I L; Rychkova, M P

    1990-01-01

    Two bovine rhodopsin mutants with substitutions of negatively charged residues within transmembrane domains II and III by uncharged ones (Asp-83----Asn and Glu-134----Gln) were constructed. Both mutants stimulated transducin GTPase with slightly lowered efficiency, but were completely unable to activate cyclic GMP phosphodiesterase. PMID:1966786

  2. Atypical OmpR/PhoB Subfamily Response Regulator GlnR of Actinomycetes Functions as a Homodimer, Stabilized by the Unphosphorylated Conserved Asp-focused Charge Interactions*

    PubMed Central

    Lin, Wei; Wang, Ying; Han, Xiaobiao; Zhang, Zilong; Wang, Chengyuan; Wang, Jin; Yang, Huaiyu; Lu, Yinhua; Jiang, Weihong; Zhao, Guo-Ping; Zhang, Peng

    2014-01-01

    The OmpR/PhoB subfamily protein GlnR of actinomycetes is an orphan response regulator that globally coordinates the expression of genes related to nitrogen metabolism. Biochemical and genetic analyses reveal that the functional GlnR from Amycolatopsis mediterranei is unphosphorylated at the potential phosphorylation Asp50 residue in the N-terminal receiver domain. The crystal structure of this receiver domain demonstrates that it forms a homodimer through the α4-β5-α5 dimer interface highly similar to the phosphorylated typical response regulator, whereas the so-called “phosphorylation pocket” is not conserved, with its space being occupied by an Arg52 from the β3-α3 loop. Both in vitro and in vivo experiments confirm that GlnR forms a functional homodimer via its receiver domain and suggest that the charge interactions of Asp50 with the highly conserved Arg52 and Thr9 in the receiver domain may be crucial in maintaining the proper conformation for homodimerization, as also supported by molecular dynamics simulations of the wild type GlnR versus the deficient mutant GlnR(D50A). This model is backed by the distinct phenotypes of the total deficient GlnR(R52A/T9A) double mutant versus the single mutants of GlnR (i.e. D50N, D50E, R52A and T9A), which have only minor effects upon both dimerization and physiological function of GlnR in vivo, albeit their DNA binding ability is weakened compared with that of the wild type. By integrating the supportive data of GlnRs from the model Streptomyces coelicolor and the pathogenic Mycobacterium tuberculosis, we conclude that the actinomycete GlnR is atypical with respect to its unphosphorylated conserved Asp residue being involved in the critical Arg/Asp/Thr charge interactions, which is essential for maintaining the biologically active homodimer conformation. PMID:24733389

  3. Pathogen specific cytokine release reveals an effect of TLR2 Arg753Gln during Candida sepsis in humans.

    PubMed

    Woehrle, Tobias; Du, Weidong; Goetz, Achim; Hsu, Hsin-Yun; Joos, Thomas O; Weiss, Manfred; Bauer, Ute; Brueckner, Uwe B; Marion Schneider, E

    2008-03-01

    Toll-like receptors (TLRs) are crucial pattern-recognition receptors (PRRs) for activation of innate and adapted immunity. TLR2 heterodimerizes with TLR1 or TLR6 to recognize multiple pathogen-associated molecular patterns (PAMPs) of fungi, Gram-positive pathogens, and mycobacteria. Receptor activation culminates in monocyte, T-helper (Th)1, and Th2 cytokine release. Single nucleotide polymorphisms (SNPs) Arg753Gln and Arg677Trp affect TLR2 responsiveness and may contribute to the course of sepsis, which is associated with substantial morbidity and mortality during intensive care treatment. We genotyped 325 critically ill patients with septic shock, and performed a detailed clinical follow-up with 47 of these patients. Here, we investigated whether distinct sepsis episodes result in defined plasma cytokine patterns, and whether cytokine profiles may be linked to the TLR2 polymorphisms. Blood sampling was done daily and microbiological testing was performed on a routine basis. DNA was extracted from whole blood and TLR2 SNPs were typed by pyrosequencing. Cytokines were measured by multiplexed array technologies and the leukocyte phenotype was determined by flow cytometry. Among the 325 ICU patients, 17 individuals (5.2%) were heterozygous for Arg753Gln. The SNP Arg677Trp was not found in any patient. Episodes of Gram-negative, Gram-positive, and Candida sepsis were recorded. During Gram-positive sepsis, the cytokine pattern did not differ between Arg753Gln heterozygous patients and wild type patients. By contrast, during Candida sepsis, the Arg753Gln heterozygous patients showed biomarker patterns that differed from wild type patients with elevated TNF-alpha plasma concentrations, but reduced IFN-gamma and IL-8 levels. In conclusion, TLR2 SNP Arg753Gln results in altered cytokine release in response to Candida but not to Gram-positive sepsis.

  4. Spin selectivity effect in achiral molecular systems

    NASA Astrophysics Data System (ADS)

    Guo, Ai-Min; Pan, Ting-Rui; Fang, Tie-Feng; Xie, X. C.; Sun, Qing-Feng

    2016-10-01

    Recently, chiral-induced spin selectivity has been attracting intense interest. Here, we report a theoretical study of spin-dependent electron transport in achiral nanotubes contacted by nonmagnetic leads. Our results reveal that by properly connecting to the leads, the achiral nanotubes can present a pronounced spin filtering phenomenon even if the spin-orbit coupling is very weak. In addition, the spin selectivity effect holds for various achiral nanotubes with different radii and is still significant in the presence of strong disorder and dephasing. These findings open new opportunities of using achiral molecules in spintronic applications and could motivate further studies on spin transport along achiral systems.

  5. In vivo formation of glutamyl-tRNA(Gln) in Escherichia coli by heterologous glutamyl-tRNA synthetases.

    PubMed

    Núñez, Harold; Lefimil, Claudia; Min, Bokkee; Söll, Dieter; Orellana, Omar

    2004-01-16

    Two types of glutamyl-tRNA synthetase exist: the discriminating enzyme (D-GluRS) forms only Glu-tRNA(Glu), while the non-discriminating one (ND-GluRS) also synthesizes Glu-tRNA(Gln), a required intermediate in protein synthesis in many organisms (but not in Escherichia coli). Testing the capacity to complement a thermosensitive E. coli gltX mutant and to suppress an E. coli trpA49 missense mutant we examined the properties of heterologous gltX genes. We demonstrate that while Acidithiobacillus ferrooxidans GluRS1 and Bacillus subtilis Q373R GluRS form Glu-tRNA(Glu), A. ferrooxidans and Helicobacter pylori GluRS2 form Glu-tRNA(Gln) in E. coli in vivo.

  6. Identification of BC005512 as a DNA Damage Responsive Murine Endogenous Retrovirus of GLN Family Involved in Cell Growth Regulation

    PubMed Central

    Wu, Yuanfeng; Qi, Xinming; Gong, Likun; Xing, Guozhen; Chen, Min; Miao, Lingling; Yao, Jun; Suzuki, Takayoshi; Furihata, Chie; Luan, Yang; Ren, Jin

    2012-01-01

    Genotoxicity assessment is of great significance in drug safety evaluation, and microarray is a useful tool widely used to identify genotoxic stress responsive genes. In the present work, by using oligonucleotide microarray in an in vivo model, we identified an unknown gene BC005512 (abbreviated as BC, official full name: cDNA sequence BC005512), whose expression in mouse liver was specifically induced by seven well-known genotoxins (GTXs), but not by non-genotoxins (NGTXs). Bioinformatics revealed that BC was a member of the GLN family of murine endogenous retrovirus (ERV). However, the relationship to genotoxicity and the cellular function of GLN are largely unknown. Using NIH/3T3 cells as an in vitro model system and quantitative real-time PCR, BC expression was specifically induced by another seven GTXs, covering diverse genotoxicity mechanisms. Additionally, dose-response and linear regression analysis showed that expression level of BC in NIH/3T3 cells strongly correlated with DNA damage, measured using the alkaline comet assay,. While in p53 deficient L5178Y cells, GTXs could not induce BC expression. Further functional studies using RNA interference revealed that down-regulation of BC expression induced G1/S phase arrest, inhibited cell proliferation and thus suppressed cell growth in NIH/3T3 cells. Together, our results provide the first evidence that BC005512, a member from GLN family of murine ERV, was responsive to DNA damage and involved in cell growth regulation. These findings could be of great value in genotoxicity predictions and contribute to a deeper understanding of GLN biological functions. PMID:22514700

  7. Analysis of Gln223Agr polymorphism of Leptin Receptor Gene in type II diabetic mellitus subjects among Malaysians.

    PubMed

    Etemad, Ali; Ramachandran, Vasudevan; Pishva, Seyyed Reza; Heidari, Farzad; Aziz, Ahmad Fazli Abdul; Yusof, Ahmad Khairuddin Mohamed; Pei, Chong Pei; Ismail, Patimah

    2013-09-18

    Leptin is known as the adipose peptide hormone. It plays an important role in the regulation of body fat and inhibits food intake by its action. Moreover, it is believed that leptin level deductions might be the cause of obesity and may play an important role in the development of Type 2 Diabetes Mellitus (T2DM), as well as in cardiovascular diseases (CVD). The Leptin Receptor (LEPR) gene and its polymorphisms have not been extensively studied in relation to the T2DM and its complications in various populations. In this study, we have determined the association of Gln223Agr loci of LEPR gene in three ethnic groups of Malaysia, namely: Malays, Chinese and Indians. A total of 284 T2DM subjects and 281 healthy individuals were recruited based on International Diabetes Federation (IDF) criteria. Genomic DNA was extracted from the buccal specimens of the subjects. The commercial polymerase chain reaction (PCR) method was carried out by proper restriction enzyme MSP I to both amplify and digest the Gln223Agr polymorphism. The p-value among the three studied races was 0.057, 0.011 and 0.095, respectively. The values such as age, WHR, FPG, HbA1C, LDL, HDL, Chol and Family History were significantly different among the subjects with Gln223Agr polymorphism of LEPR (p < 0.05).

  8. Analysis of Gln223Agr polymorphism of Leptin Receptor Gene in type II diabetic mellitus subjects among Malaysians.

    PubMed

    Etemad, Ali; Ramachandran, Vasudevan; Pishva, Seyyed Reza; Heidari, Farzad; Aziz, Ahmad Fazli Abdul; Yusof, Ahmad Khairuddin Mohamed; Pei, Chong Pei; Ismail, Patimah

    2013-01-01

    Leptin is known as the adipose peptide hormone. It plays an important role in the regulation of body fat and inhibits food intake by its action. Moreover, it is believed that leptin level deductions might be the cause of obesity and may play an important role in the development of Type 2 Diabetes Mellitus (T2DM), as well as in cardiovascular diseases (CVD). The Leptin Receptor (LEPR) gene and its polymorphisms have not been extensively studied in relation to the T2DM and its complications in various populations. In this study, we have determined the association of Gln223Agr loci of LEPR gene in three ethnic groups of Malaysia, namely: Malays, Chinese and Indians. A total of 284 T2DM subjects and 281 healthy individuals were recruited based on International Diabetes Federation (IDF) criteria. Genomic DNA was extracted from the buccal specimens of the subjects. The commercial polymerase chain reaction (PCR) method was carried out by proper restriction enzyme MSP I to both amplify and digest the Gln223Agr polymorphism. The p-value among the three studied races was 0.057, 0.011 and 0.095, respectively. The values such as age, WHR, FPG, HbA1C, LDL, HDL, Chol and Family History were significantly different among the subjects with Gln223Agr polymorphism of LEPR (p < 0.05). PMID:24051404

  9. Analysis of Gln223Agr Polymorphism of Leptin Receptor Gene in Type II Diabetic Mellitus Subjects among Malaysians

    PubMed Central

    Etemad, Ali; Ramachandran, Vasudevan; Pishva, Seyyed Reza; Heidari, Farzad; Aziz, Ahmad Fazli Abdul; Yusof, Ahmad Khairuddin Mohamed; Pei, Chong Pei; Ismail, Patimah

    2013-01-01

    Leptin is known as the adipose peptide hormone. It plays an important role in the regulation of body fat and inhibits food intake by its action. Moreover, it is believed that leptin level deductions might be the cause of obesity and may play an important role in the development of Type 2 Diabetes Mellitus (T2DM), as well as in cardiovascular diseases (CVD). The Leptin Receptor (LEPR) gene and its polymorphisms have not been extensively studied in relation to the T2DM and its complications in various populations. In this study, we have determined the association of Gln223Agr loci of LEPR gene in three ethnic groups of Malaysia, namely: Malays, Chinese and Indians. A total of 284 T2DM subjects and 281 healthy individuals were recruited based on International Diabetes Federation (IDF) criteria. Genomic DNA was extracted from the buccal specimens of the subjects. The commercial polymerase chain reaction (PCR) method was carried out by proper restriction enzyme MSP I to both amplify and digest the Gln223Agr polymorphism. The p-value among the three studied races was 0.057, 0.011 and 0.095, respectively. The values such as age, WHR, FPG, HbA1C, LDL, HDL, Chol and Family History were significantly different among the subjects with Gln223Agr polymorphism of LEPR (p < 0.05). PMID:24051404

  10. A common IL-13 Arg130Gln single nucleotide polymorphism among Chinese atopy patients with allergic rhinitis.

    PubMed

    Wang, Min; Xing, Zhi-Min; Lu, Chao; Ma, You-Xiang; Yu, De-Lin; Yan, Zheng; Wang, Shen-Wu; Yu, Li-Sheng

    2003-10-01

    Allergic rhinitis is a major public health problem and has seen its prevalence increase during the past few decades. Interleukin 13 (IL-13) has been implicated in the pathogenesis and in the regulation of immunoglobulin E (IgE) production. Single nucleotide polymorphisms (SNPs) have been found in both the coding sequence and the promoter region of IL-13, and such SNPs have been associated with allergic asthma. We have investigated whether IL-13 SNPs are associated with allergic rhinitis. Among 188 Chinese adult patients with allergic rhinitis and 87 normal controls, no significant difference was found in either allele or haplotype frequency of the SNPs between the two groups. Within patients, there was a significant association of the IL-13 Arg130Gln SNP, but not of the IL-13 promoter -1112(C/T) SNP, with serum total IgE levels. Patients with a Gln/Gln genotype showed much higher serum total IgE than those with an Arg/Arg genotype. When tested for serum-specific IgE, patients allergic to Derp 1, but not those allergic to Artemisia pollen, showed a significant association with the IL-13 promoter SNP. Thus, our results suggest a possible involvement of IL-13 SNPs in the regulation of IgE production in response to allergens in this Chinese population. PMID:12928861

  11. Spin Density Distribution in Open-Shell Transition Metal Systems: A Comparative Post-Hartree-Fock, Density Functional Theory, and Quantum Monte Carlo Study of the CuCl2 Molecule.

    PubMed

    Caffarel, Michel; Giner, Emmanuel; Scemama, Anthony; Ramírez-Solís, Alejandro

    2014-12-01

    We present a comparative study of the spatial distribution of the spin density of the ground state of CuCl2 using Density Functional Theory (DFT), quantum Monte Carlo (QMC), and post-Hartree-Fock wave function theory (WFT). A number of studies have shown that an accurate description of the electronic structure of the lowest-lying states of this molecule is particularly challenging due to the interplay between the strong dynamical correlation effects in the 3d shell and the delocalization of the 3d hole over the chlorine atoms. More generally, this problem is representative of the difficulties encountered when studying open-shell metal-containing molecular systems. Here, it is shown that qualitatively different results for the spin density distribution are obtained from the various quantum-mechanical approaches. At the DFT level, the spin density distribution is found to be very dependent on the functional employed. At the QMC level, Fixed-Node Diffusion Monte Carlo (FN-DMC) results are strongly dependent on the nodal structure of the trial wave function. Regarding wave function methods, most approaches not including a very high amount of dynamic correlation effects lead to a much too high localization of the spin density on the copper atom, in sharp contrast with DFT. To shed some light on these conflicting results Full CI-type (FCI) calculations using the 6-31G basis set and based on a selection process of the most important determinants, the so-called CIPSI approach (Configuration Interaction with Perturbative Selection done Iteratively) are performed. Quite remarkably, it is found that for this 63-electron molecule and a full CI space including about 10(18) determinants, the FCI limit can almost be reached. Putting all results together, a natural and coherent picture for the spin distribution is proposed. PMID:26583212

  12. Spin Density Distribution in Open-Shell Transition Metal Systems: A Comparative Post-Hartree-Fock, Density Functional Theory, and Quantum Monte Carlo Study of the CuCl2 Molecule.

    PubMed

    Caffarel, Michel; Giner, Emmanuel; Scemama, Anthony; Ramírez-Solís, Alejandro

    2014-12-01

    We present a comparative study of the spatial distribution of the spin density of the ground state of CuCl2 using Density Functional Theory (DFT), quantum Monte Carlo (QMC), and post-Hartree-Fock wave function theory (WFT). A number of studies have shown that an accurate description of the electronic structure of the lowest-lying states of this molecule is particularly challenging due to the interplay between the strong dynamical correlation effects in the 3d shell and the delocalization of the 3d hole over the chlorine atoms. More generally, this problem is representative of the difficulties encountered when studying open-shell metal-containing molecular systems. Here, it is shown that qualitatively different results for the spin density distribution are obtained from the various quantum-mechanical approaches. At the DFT level, the spin density distribution is found to be very dependent on the functional employed. At the QMC level, Fixed-Node Diffusion Monte Carlo (FN-DMC) results are strongly dependent on the nodal structure of the trial wave function. Regarding wave function methods, most approaches not including a very high amount of dynamic correlation effects lead to a much too high localization of the spin density on the copper atom, in sharp contrast with DFT. To shed some light on these conflicting results Full CI-type (FCI) calculations using the 6-31G basis set and based on a selection process of the most important determinants, the so-called CIPSI approach (Configuration Interaction with Perturbative Selection done Iteratively) are performed. Quite remarkably, it is found that for this 63-electron molecule and a full CI space including about 10(18) determinants, the FCI limit can almost be reached. Putting all results together, a natural and coherent picture for the spin distribution is proposed.

  13. Spin heat accumulation and spin-dependent temperatures in nanopillar spin valves

    NASA Astrophysics Data System (ADS)

    Dejene, F. K.; Flipse, J.; Bauer, G. E. W.; van Wees, B. J.

    2013-10-01

    Since the discovery of the giant magnetoresistance effect the intrinsic angular momentum of the electron has opened up new spin-based device concepts. Our present understanding of the coupled transport of charge, spin and heat relies on the two-channel model for spin-up and spin-down electrons having equal temperatures. Here we report the observation of different (effective) temperatures for the spin-up and spin-down electrons in a nanopillar spin valve subject to a heat current. By three-dimensional finite element modelling of our devices for varying thickness of the non-magnetic layer, spin heat accumulations (the difference of the spin temperatures) of 120mK and 350mK are extracted at room temperature and 77K, respectively, which is of the order of 10% of the total temperature bias over the nanopillar. This technique uniquely allows the study of inelastic spin scattering at low energies and elevated temperatures, which is not possible by spectroscopic methods.

  14. Co-Inactivation of GlnR and CodY Regulators Impacts Pneumococcal Cell Wall Physiology

    PubMed Central

    Johnston, Calum; Bootsma, Hester J.; Aldridge, Christine; Manuse, Sylvie; Gisch, Nicolas; Schwudke, Dominik; Hermans, Peter W. M.; Grangeasse, Christophe; Polard, Patrice; Vollmer, Waldemar; Claverys, Jean-Pierre

    2015-01-01

    CodY, a nutritional regulator highly conserved in low G+C Gram-positive bacteria, is essential in Streptococcus pneumoniae (the pneumococcus). A published codY mutant possessed suppressing mutations inactivating the fatC and amiC genes, respectively belonging to iron (Fat/Fec) and oligopeptide (Ami) ABC permease operons, which are directly repressed by CodY. Here we analyzed two additional published codY mutants to further explore the essentiality of CodY. We show that one, in which the regulator of glutamine/glutamate metabolism glnR had been inactivated by design, had only a suppressor in fecE (a gene in the fat/fec operon), while the other possessed both fecE and amiC mutations. Independent isolation of three different fat/fec suppressors thus establishes that reduction of iron import is crucial for survival without CodY. We refer to these as primary suppressors, while inactivation of ami, which is not essential for survival of codY mutants and acquired after initial fat/fec inactivation, can be regarded as a secondary suppressor. The availability of codY- ami+ cells allowed us to establish that CodY activates competence for genetic transformation indirectly, presumably by repressing ami which is known to antagonize competence. The glnR codY fecE mutant was then found to be only partially viable on solid medium and hypersensitive to peptidoglycan (PG) targeting agents such as the antibiotic cefotaxime and the muramidase lysozyme. While analysis of PG and teichoic acid composition uncovered no alteration in the glnR codY fecE mutant compared to wildtype, electron microscopy revealed altered ultrastructure of the cell wall in the mutant, establishing that co-inactivation of GlnR and CodY regulators impacts pneumococcal cell wall physiology. In light of rising levels of resistance to PG-targeting antibiotics of natural pneumococcal isolates, GlnR and CodY constitute potential alternative therapeutic targets to combat this debilitating pathogen, as co

  15. Cooperative binding of MgATP and MgADP in the trimeric P(II) protein GlnK2 from Archaeoglobus fulgidus.

    PubMed

    Helfmann, Sarah; Lü, Wei; Litz, Claudia; Andrade, Susana L A

    2010-09-10

    P(II)-like proteins, such as GlnK, found in a wide variety of organisms from prokaryotes to plants constitute a family of cytoplasmic signaling proteins that play a central regulatory role in the assimilation of nitrogen for biosyntheses. They specifically bind and are modulated by effector molecules such as adenosine triphosphate, adenosine diphosphate and 2-oxoglutarate. Their highly conserved, trimeric structure suggests that cooperativity in effector binding might be the basis for the ability to integrate and respond to a wide range of concentrations, but to date no direct quantification of this cooperative behavior has been presented. The hyperthermophilic archaeon Archaeoglobus fulgidus contains three GlnK proteins, functionally associated with ammonium transport proteins (Amt). We have characterized GlnK2 and its interaction with effectors by high-resolution X-ray crystallography and isothermal titration calorimetry. Binding of adenosine nucleotides resulted in distinct, cooperative behavior for ATP and ADP. While 2-oxoglutarate has been shown to interact with other GlnK proteins, GlnK2 was completely insensitive to this key indicator of a low level of intracellular nitrogen. These findings point to different regulation and modulation patterns and add to our understanding of the flexibility and versatility of the GlnK family of signaling proteins.

  16. Ternary complex formation between AmtB, GlnZ and the nitrogenase regulatory enzyme DraG reveals a novel facet of nitrogen regulation in bacteria.

    PubMed

    Huergo, Luciano F; Merrick, Mike; Pedrosa, Fábio O; Chubatsu, Leda S; Araujo, Luíza M; Souza, Emanuel M

    2007-12-01

    Ammonium movement across biological membranes is facilitated by a class of ubiquitous channel proteins from the Amt/Rh family. Amt proteins have also been implicated in cellular responses to ammonium availability in many organisms. Ammonium sensing by Amt in bacteria is mediated by complex formation with cytosolic proteins of the P(II) family. In this study we have characterized in vitro complex formation between the AmtB and P(II) proteins (GlnB and GlnZ) from the diazotrophic plant-associative bacterium Azospirillum brasilense. AmtB-P(II) complex formation only occurred in the presence of adenine nucleotides and was sensitive to 2-oxoglutarate when Mg(2+) and ATP were present, but not when ATP was substituted by ADP. We have also shown in vitro complex formation between GlnZ and the nitrogenase regulatory enzyme DraG, which was stimulated by ADP. The stoichiometry of this complex was 1:1 (DraG monomer : GlnZ trimer). We have previously reported that in vivo high levels of extracellular ammonium cause DraG to be sequestered to the cell membrane in an AmtB and GlnZ-dependent manner. We now report the reconstitution of a ternary complex involving AmtB, GlnZ and DraG in vitro. Sequestration of a regulatory protein by the membrane-bound AmtB-P(II) complex defines a new regulatory role for Amt proteins in Prokaryotes.

  17. Lactosylated gramicidin-based lipid nanoparticles (Lac-GLN) for targeted delivery of anti-miR-155 to hepatocellular carcinoma.

    PubMed

    Zhang, Mengzi; Zhou, Xiaoju; Wang, Bo; Yung, Bryant C; Lee, Ly J; Ghoshal, Kalpana; Lee, Robert J

    2013-06-28

    Lactosylated gramicidin-containing lipid nanoparticles (Lac-GLN) were developed for delivery of anti-microRNA-155 (anti-miR-155) to hepatocellular carcinoma (HCC) cells. MiR-155 is an oncomiR frequently elevated in HCC. The Lac-GLN formulation contained N-lactobionyl-dioleoyl phosphatidylethanolamine (Lac-DOPE), a ligand for the asialoglycoprotein receptor (ASGR), and an antibiotic peptide gramicidin A. The nanoparticles exhibited a mean particle diameter of 73 nm, zeta potential of +3.5mV, anti-miR encapsulation efficiency of 88%, and excellent colloidal stability at 4°C. Lac-GLN effectively delivered anti-miR-155 to HCC cells with a 16.1- and 4.1-fold up-regulation of miR-155 targets C/EBPβ and FOXP3 genes, respectively, and exhibited significant greater efficiency over Lipofectamine 2000. In mice, intravenous injection of Lac-GLN containing Cy3-anti-miR-155 led to preferential accumulation of the anti-miR-155 in hepatocytes. Intravenous administration of 1.5 mg/kg anti-miR-155 loaded Lac-GLN resulted in up-regulation of C/EBPβ and FOXP3 by 6.9- and 2.2-fold, respectively. These results suggest potential application of Lac-GLN as a liver-specific delivery vehicle for anti-miR therapy.

  18. Spin hydrodynamic generation

    NASA Astrophysics Data System (ADS)

    Takahashi, R.; Matsuo, M.; Ono, M.; Harii, K.; Chudo, H.; Okayasu, S.; Ieda, J.; Takahashi, S.; Maekawa, S.; Saitoh, E.

    2016-01-01

    Magnetohydrodynamic generation is the conversion of fluid kinetic energy into electricity. Such conversion, which has been applied to various types of electric power generation, is driven by the Lorentz force acting on charged particles and thus a magnetic field is necessary. On the other hand, recent studies of spintronics have revealed the similarity between the function of a magnetic field and that of spin-orbit interactions in condensed matter. This suggests the existence of an undiscovered route to realize the conversion of fluid dynamics into electricity without using magnetic fields. Here we show electric voltage generation from fluid dynamics free from magnetic fields; we excited liquid-metal flows in a narrow channel and observed longitudinal voltage generation in the liquid. This voltage has nothing to do with electrification or thermoelectric effects, but turned out to follow a universal scaling rule based on a spin-mediated scenario. The result shows that the observed voltage is caused by spin-current generation from a fluid motion: spin hydrodynamic generation. The observed phenomenon allows us to make mechanical spin-current and electric generators, opening a door to fluid spintronics.

  19. Geometric spin echo under zero field

    NASA Astrophysics Data System (ADS)

    Sekiguchi, Yuhei; Komura, Yusuke; Mishima, Shota; Tanaka, Touta; Niikura, Naeko; Kosaka, Hideo

    2016-05-01

    Spin echo is a fundamental tool for quantum registers and biomedical imaging. It is believed that a strong magnetic field is needed for the spin echo to provide long memory and high resolution, since a degenerate spin cannot be controlled or addressed under a zero magnetic field. While a degenerate spin is never subject to dynamic control, it is still subject to geometric control. Here we show the spin echo of a degenerate spin subsystem, which is geometrically controlled via a mediating state split by the crystal field, in a nitrogen vacancy centre in diamond. The demonstration reveals that the degenerate spin is protected by inherent symmetry breaking called zero-field splitting. The geometric spin echo under zero field provides an ideal way to maintain the coherence without any dynamics, thus opening the way to pseudo-static quantum random access memory and non-invasive biosensors.

  20. Geometric spin echo under zero field

    PubMed Central

    Sekiguchi, Yuhei; Komura, Yusuke; Mishima, Shota; Tanaka, Touta; Niikura, Naeko; Kosaka, Hideo

    2016-01-01

    Spin echo is a fundamental tool for quantum registers and biomedical imaging. It is believed that a strong magnetic field is needed for the spin echo to provide long memory and high resolution, since a degenerate spin cannot be controlled or addressed under a zero magnetic field. While a degenerate spin is never subject to dynamic control, it is still subject to geometric control. Here we show the spin echo of a degenerate spin subsystem, which is geometrically controlled via a mediating state split by the crystal field, in a nitrogen vacancy centre in diamond. The demonstration reveals that the degenerate spin is protected by inherent symmetry breaking called zero-field splitting. The geometric spin echo under zero field provides an ideal way to maintain the coherence without any dynamics, thus opening the way to pseudo-static quantum random access memory and non-invasive biosensors. PMID:27193936

  1. Ehrlichia chaffeensis Proliferation Begins with NtrY/NtrX and PutA/GlnA Upregulation and CtrA Degradation Induced by Proline and Glutamine Uptake

    PubMed Central

    Cheng, Zhihui; Lin, Mingqun

    2014-01-01

    ABSTRACT How the obligatory intracellular bacterium Ehrlichia chaffeensis begins to replicate upon entry into human monocytes is poorly understood. Here, we examined the potential role of amino acids in initiating intracellular replication. PutA converts proline to glutamate, and GlnA converts glutamate to glutamine. E. chaffeensis PutA and GlnA complemented Escherichia coli putA and glnA mutants. Methionine sulfoximine, a glutamine synthetase inhibitor, inhibited E. chaffeensis GlnA activity and E. chaffeensis infection of human cells. Incubation of E. chaffeensis with human cells rapidly induced putA and glnA expression that peaked at 24 h postincubation. E. chaffeensis took up proline and glutamine but not glutamate. Pretreatment of E. chaffeensis with a proline transporter inhibitor (protamine), a glutamine transporter inhibitor (histidine), or proline analogs inhibited E. chaffeensis infection, whereas pretreatment with proline or glutamine enhanced infection and upregulated putA and glnA faster than no treatment or glutamate pretreatment. The temporal response of putA and glnA expression was similar to that of NtrY and NtrX, a two-component system, and electrophoretic mobility shift assays showed specific binding of recombinant E. chaffeensis NtrX (rNtrX) to the promoter regions of E. chaffeensis putA and glnA. Furthermore, rNtrX transactivated E. chaffeensis putA and glnA promoter-lacZ fusions in E. coli. Growth-promoting activities of proline and glutamine were also accompanied by rapid degradation of the DNA-binding protein CtrA. Our results suggest that proline and glutamine uptake regulates putA and glnA expression through NtrY/NtrX and facilitates degradation of CtrA to initiate a new cycle of E. chaffeensis growth. PMID:25425236

  2. The β2 Adrenergic Receptor Gln27Glu Polymorphism Affects Insulin Resistance in Patients with Heart Failure

    PubMed Central

    Vardeny, Orly; Detry, Michelle A.; Moran, John J.M.; Johnson, Maryl R.; Sweitzer, Nancy K.

    2009-01-01

    Insulin resistance is prevalent in heart failure (HF) patients, and beta2 adrenergic receptors (β2-AR) are involved in glucose homeostasis. We hypothesized that β2-AR Gln27Glu and Arg16Gly polymorphisms affect insulin resistance in HF patients and explored if effects of β2-AR polymorphisms on glucose handling are modified by choice of beta blocker. We studied 30 non-diabetic adults with HF and a history of systolic dysfunction, 15 on metoprolol succinate and 15 on carvedilol. We measured fasting glucose, insulin, and insulin resistance, and determined β2-AR genotypes at codons 27 and 16. The cohort was insulin resistant with a mean HOMA-IR score of 3.4 (95%CI 2.3-4.5, normal value=1.0). Patients with the Glu27Glu genotype exhibited higher insulin and HOMA-IR compared to individuals carrying a Gln allele (p=0.019). Patients taking carvedilol demonstrated lower insulin resistance if also carrying a wild type allele at codon 27 (fasting insulin 9.8±10.5 versus 20.5±2.1 for variant, p=0.072, HOMA-IR 2.4±2.7 versus 5.1±0.6, p=0.074, respectively); those on metoprolol succinate had high insulin resistance irrespective of genotype. The β2-AR Glu27Glu genotype may be associated with higher insulin concentrations and insulin resistance in patients with HF. Future studies are needed to confirm whether treatment with carvedilol may be associated with decreased insulin and insulin resistance in β2-AR codon 27 Gln carriers. PMID:19034036

  3. Frequencies of the Arg16Gly, Gln27Glu and Thr164Ile Adrenoceptor β2 Polymorphisms among Omanis

    PubMed Central

    Al-Balushi, Khalid; Zadjali, Fahad; Al-Sinani, Sawsan; Al-Zadjali, Al-Muatasim; Bayoumi, Riad

    2015-01-01

    Objectives: This study aimed to assess the distribution of missense mutations in the adrenoceptor β2 (ADRB2) gene in an Omani cohort. Methods: This study was carried out between May 2014 and March 2015 at the Sultan Qaboos University, Muscat, Oman. Blood samples were taken from 316 unrelated Omani subjects. Genotyping for rs1042713 (c.46A>G, p.Arg16Gly), rs1042714 (c.79C>G, p.Gln27Glu) and rs1800888 (c.491C>T, p.Thr164Ile) polymorphisms was performed by real-time polymerase chain reaction using single nucleotide polymorphism (SNP) genotyping assays. The allelic frequencies of these polymorphisms were estimated on the basis of the observed numbers of specific alleles from the genotype data for male and female subjects. The genotype frequencies for each polymorphism were tested for deviation from the Hardy-Weinberg equilibrium. Results: Gly16 and Glu27 were the most frequent variants found among the cohort (63% and 75%, respectively). The Ile164 variant was not detected in the study population. There was a significant linkage disequilibrium between the rs1042713 and rs1042714 SNPs (r2 = 0.209; P ≤0.001). The most observed haplotypes were Gly16-Gln27 and Arg16-Gln27 (0.37 and 0.38, respectively). The frequency of Gly16-Glu27 was 0.25, comprising all Glu27 carriers. Conclusion: The allelic distribution of variants in this Omani cohort was similar to distributions reported among Caucasian populations. PMID:26629374

  4. Raman Spectroscopy Reveals Direct Chromophore Interactions in the Leu/Gln105 Spectral Tuning Switch of Proteorhodopsins

    PubMed Central

    Kralj, Joel M.; Spudich, Elena N.; Spudich, John L.; Rothschild, Kenneth J.

    2013-01-01

    Proteorhodopsins are an extensive family of photoactive membrane proteins found in proteobacteria distributed throughout the world’s oceans which are often classified as green- or blue-absorbing (GPR and BPR, respectively) on the basis of their visible absorption maxima. GPR and BPR have significantly different properties including photocycle lifetimes and wavelength dependence on pH. Previous studies revealed that these different properties are correlated with a single residue, Leu105 in GPR and Gln105 in BPR, although the molecular basis for the different properties of GPR and BPR has not yet been elucidated. We have studied the unexcited states of GPR and BPR using resonance Raman spectroscopy which enhances almost exclusively chromophore vibrations. We find that both spectra are remarkably similar, indicating that the retinylidene structure of GPR and BPR are almost identical. However, the frequency of a band assigned to the retinal C13-methyl-rock vibration is shifted from 1006 cm−1 in GPR to 1012 cm−1 in BPR. A similar shift is observed in the GPR mutant L105Q indicating Leu and Gln residues interact differently with the retinal C13-methyl group. The environment of the Schiff base of GPR and BPR differ as indicated by differences in the H/D induced down-shift of the Schiff base vibration. Residues located in transmembrane helices (D–G) do not contribute to the observed differences in the protein–chromophore interaction between BPR and GPR based on the Raman spectra of chimeras. These results support a model whereby the substitution of the hydrophilic Gln105 in BPR with the smaller hydrophobic Leu105 in GPR directly alters the environment of both the retinal C13 group and the Schiff base. PMID:18717545

  5. A novel mutation (Arg169Gln) of the cardiac ryanodine receptor gene causing exercise-induced bidirectional ventricular tachycardia.

    PubMed

    Hsueh, Chia-Hsiang; Weng, Yi-Chun; Chen, Chao-Yu; Lin, Tin-Kwang; Lin, Yen-Hung; Lai, Ling-Ping; Lin, Jiunn-Lee

    2006-04-01

    An 18-year-old woman presented with exercise induced sudden collapse. Series of cardiac work up revealed no structural cardiac abnormalities. Bidirectional ventricular tachycardia occurred during a treadmill exercise test. Under the impression of catecholaminergic polymorphic ventricular tachycardia, we screened the cardiac ryanodine receptor gene for mutation. We identified a novel heterozygous mutation at the 169th amino acid (Arg169Gln). This amino acid is highly conserved among many species and this mutation was not present in 50 normal control subjects. This patient was treated with a beta-block with good response. PMID:16517285

  6. Realization of a micrometre-scale spin-wave interferometer

    PubMed Central

    Rousseau, O.; Rana, B.; Anami, R.; Yamada, M.; Miura, K.; Ogawa, S.; Otani, Y.

    2015-01-01

    The recent development of spin dynamics opens perspectives for various applications based on spin waves, including logic devices. The first important step in the realization of spin-wave-based logics is the manipulation of spin-wave interference. Here, we present the experimental realization of a micrometre-scale spin-wave interferometer consisting of two parallel spin-wave waveguides. The spin waves propagate through the waveguides and the superposition or interference of the electrical signals corresponding to the spin waves is measured. A direct current flowing through a metal wire underneath one of the spin-wave waveguides affects the propagation properties of the corresponding spin wave. The signal of constructive or destructive interference depends on the magnitude and direction of the applied direct current. Thus, the present work demonstrates a unique manipulation of spin-wave interference. PMID:25975283

  7. Realization of a micrometre-scale spin-wave interferometer.

    PubMed

    Rousseau, O; Rana, B; Anami, R; Yamada, M; Miura, K; Ogawa, S; Otani, Y

    2015-01-01

    The recent development of spin dynamics opens perspectives for various applications based on spin waves, including logic devices. The first important step in the realization of spin-wave-based logics is the manipulation of spin-wave interference. Here, we present the experimental realization of a micrometre-scale spin-wave interferometer consisting of two parallel spin-wave waveguides. The spin waves propagate through the waveguides and the superposition or interference of the electrical signals corresponding to the spin waves is measured. A direct current flowing through a metal wire underneath one of the spin-wave waveguides affects the propagation properties of the corresponding spin wave. The signal of constructive or destructive interference depends on the magnitude and direction of the applied direct current. Thus, the present work demonstrates a unique manipulation of spin-wave interference.

  8. Transposon mutations in the 5' end of glnD, the gene for a nitrogen regulatory sensor, that suppress the osmosensitive phenotype caused by otsBA lesions in Escherichia coli.

    PubMed

    Tøndervik, Anne; Torgersen, Haakon R; Botnmark, Hans K; Strøm, Arne R

    2006-06-01

    GlnD of Escherichia coli is a bifunctional signal-transducing enzyme (102.4 kDa) which uridylylates the allosteric regulatory protein PII and deuridylylates PII-UMP in response to growth with nitrogen excess or limitation, respectively. GlnD catalyzes these reactions in response to high or low levels of cytoplasmic glutamine, respectively, and indirectly directs the expression of nitrogen-regulated genes, e.g., the glnK-amtB operon. We report that chromosomal mini-Tn10 insertions situated after nucleotide number 997 or 1075 of glnD partially suppressed the osmosensitive phenotype of DeltaotsBA or otsA::Tn10 mutations (defective osmoregulatory trehalose synthesis). Strains carrying these glnD::mini-Tn10 mutations either completely repressed the expression of trp::(glnKp-lacZ) or induced this reporter system to nearly 60% of the wild-type glnD level in response to nitrogen availability, an essentially normal response. This was in contrast to the much-studied glnD99::Tn10 mutation, which carries its insertion in the 3' end of the gene, causes a complete repression of glnKp-lacZ expression under all growth conditions, and also confers leaky glutamine auxotrophy. When expressed from the Pm promoter in plasmid constructs, the present glnD mutations produced proteins with an apparent mass of 39 or 42 kDa. These proteins were deduced to comprise 344 or 370 N-terminal residues, respectively, harboring the known nucleotidyltransferase domain of GlnD, plus a common C-terminal addition of 12 residues encoded by IS10. They lacked three other domains of GlnD. Apparently, the transferase domain by itself enabled the cells to catalyze the uridylylation reaction and direct nitrogen-regulated gene expression. Our data indicate that there exists a link between osmotic stress and the nitrogen response. PMID:16740928

  9. Transposon Mutations in the 5′ End of glnD, the Gene for a Nitrogen Regulatory Sensor, That Suppress the Osmosensitive Phenotype Caused by otsBA Lesions in Escherichia coli

    PubMed Central

    Tøndervik, Anne; Torgersen, Haakon R.; Botnmark, Hans K.; Strøm, Arne R.

    2006-01-01

    GlnD of Escherichia coli is a bifunctional signal-transducing enzyme (102.4 kDa) which uridylylates the allosteric regulatory protein PII and deuridylylates PII-UMP in response to growth with nitrogen excess or limitation, respectively. GlnD catalyzes these reactions in response to high or low levels of cytoplasmic glutamine, respectively, and indirectly directs the expression of nitrogen-regulated genes, e.g., the glnK-amtB operon. We report that chromosomal mini-Tn10 insertions situated after nucleotide number 997 or 1075 of glnD partially suppressed the osmosensitive phenotype of ΔotsBA or otsA::Tn10 mutations (defective osmoregulatory trehalose synthesis). Strains carrying these glnD::mini-Tn10 mutations either completely repressed the expression of trp::(glnKp-lacZ) or induced this reporter system to nearly 60% of the wild-type glnD level in response to nitrogen availability, an essentially normal response. This was in contrast to the much-studied glnD99::Tn10 mutation, which carries its insertion in the 3′ end of the gene, causes a complete repression of glnKp-lacZ expression under all growth conditions, and also confers leaky glutamine auxotrophy. When expressed from the Pm promoter in plasmid constructs, the present glnD mutations produced proteins with an apparent mass of 39 or 42 kDa. These proteins were deduced to comprise 344 or 370 N-terminal residues, respectively, harboring the known nucleotidyltransferase domain of GlnD, plus a common C-terminal addition of 12 residues encoded by IS10. They lacked three other domains of GlnD. Apparently, the transferase domain by itself enabled the cells to catalyze the uridylylation reaction and direct nitrogen-regulated gene expression. Our data indicate that there exists a link between osmotic stress and the nitrogen response. PMID:16740928

  10. The spin structure of the proton

    SciTech Connect

    Bass, Steven D.

    2005-10-15

    This article reviews the present understanding of the QCD spin structure of the proton. The author first outlines the proton spin puzzle and its possible resolution in QCD. Then the review explores the present and next generation of experiments being undertaken to resolve the proton's spin-flavor structure, explaining the theoretical issues involved, the present status of experimental investigation, and the open questions and challenges for future investigation.

  11. Supramolecular spin valves

    NASA Astrophysics Data System (ADS)

    Urdampilleta, M.; Klyatskaya, S.; Cleuziou, J.-P.; Ruben, M.; Wernsdorfer, W.

    2011-07-01

    Magnetic molecules are potential building blocks for the design of spintronic devices. Moreover, molecular materials enable the combination of bottom-up processing techniques, for example with conventional top-down nanofabrication. The development of solid-state spintronic devices based on the giant magnetoresistance, tunnel magnetoresistance and spin-valve effects has revolutionized magnetic memory applications. Recently, a significant improvement of the spin-relaxation time has been observed in organic semiconductor tunnel junctions, single non-magnetic molecules coupled to magnetic electrodes have shown giant magnetoresistance and hybrid devices exploiting the quantum tunnelling properties of single-molecule magnets have been proposed. Herein, we present an original spin-valve device in which a non-magnetic molecular quantum dot, made of a single-walled carbon nanotube contacted with non-magnetic electrodes, is laterally coupled through supramolecular interactions to TbPc2 single-molecule magnets (Pc=phthalocyanine). Their localized magnetic moments lead to a magnetic field dependence of the electrical transport through the single-walled carbon nanotube, resulting in magnetoresistance ratios up to 300% at temperatures less than 1 K. We thus demonstrate the functionality of a supramolecular spin valve without magnetic leads. Our results open up prospects of new spintronic devices with quantum properties.

  12. Supramolecular spin valves.

    PubMed

    Urdampilleta, M; Klyatskaya, S; Cleuziou, J-P; Ruben, M; Wernsdorfer, W

    2011-07-01

    Magnetic molecules are potential building blocks for the design of spintronic devices. Moreover, molecular materials enable the combination of bottom-up processing techniques, for example with conventional top-down nanofabrication. The development of solid-state spintronic devices based on the giant magnetoresistance, tunnel magnetoresistance and spin-valve effects has revolutionized magnetic memory applications. Recently, a significant improvement of the spin-relaxation time has been observed in organic semiconductor tunnel junctions, single non-magnetic molecules coupled to magnetic electrodes have shown giant magnetoresistance and hybrid devices exploiting the quantum tunnelling properties of single-molecule magnets have been proposed. Herein, we present an original spin-valve device in which a non-magnetic molecular quantum dot, made of a single-walled carbon nanotube contacted with non-magnetic electrodes, is laterally coupled through supramolecular interactions to TbPc(2) single-molecule magnets (Pc=phthalocyanine). Their localized magnetic moments lead to a magnetic field dependence of the electrical transport through the single-walled carbon nanotube, resulting in magnetoresistance ratios up to 300% at temperatures less than 1 K. We thus demonstrate the functionality of a supramolecular spin valve without magnetic leads. Our results open up prospects of new spintronic devices with quantum properties. PMID:21685902

  13. Functional analysis of the GAF domain of NifA in Azospirillum brasilense: effects of Tyr-->Phe mutations on NifA and its interaction with GlnB.

    PubMed

    Chen, Sanfeng; Liu, Li; Zhou, Xiaoyu; Elmerich, Claudine; Li, Ji-Lun

    2005-06-01

    Regulation of NifA activity in Azospirillum brasilense depends on GlnB (a PII protein), and it was previously reported that the target of GlnB activity is the N-terminal domain of NifA. Furthermore, mutation of the Tyr residue at position 18 in the N-terminal domain resulted in a NifA protein that did not require GlnB for activity under nitrogen fixation conditions. We report here that a NifA double mutant in which the Tyr residues at positions 18 and 53 of NifA N-were simultaneously replaced by Phe (NifA-Y1853F) displays high nitrogenase activity, which is still regulatable by ammonia, but not by GlnB. The yeast two-hybrid technique was used to investigate whether GlnB can physically interact with wild-type and mutant NifA proteins. GlnB was found to interact directly with the N-terminal GAF domain of wild-type NifA, but not with its central or C-terminal domain. GlnB could still bind to the single NifA mutants Y18F and Y53F. In contrast, no interaction was detected between GlnB and the double mutant NifA-Y18/53F or between GlnB and NifA-Y43.

  14. Charge and spin transport in mesoscopic superconductors

    PubMed Central

    Wolf, M J; Hübler, F; Kolenda, S

    2014-01-01

    Summary Background: Non-equilibrium charge transport in superconductors has been investigated intensely in the 1970s and 1980s, mostly in the vicinity of the critical temperature. Much less attention has been paid to low temperatures and the role of the quasiparticle spin. Results: We report here on nonlocal transport in superconductor hybrid structures at very low temperatures. By comparing the nonlocal conductance obtained by using ferromagnetic and normal-metal detectors, we discriminate charge and spin degrees of freedom. We observe spin injection and long-range transport of pure, chargeless spin currents in the regime of large Zeeman splitting. We elucidate charge and spin transport by comparison to theoretical models. Conclusion: The observed long-range chargeless spin transport opens a new path to manipulate and utilize the quasiparticle spin in superconductor nanostructures. PMID:24605283

  15. Spin filter for arbitrary spins by substrate engineering

    NASA Astrophysics Data System (ADS)

    Pal, Biplab; Römer, Rudolf A.; Chakrabarti, Arunava

    2016-08-01

    We design spin filters for particles with potentially arbitrary spin S≤ft(=1/2,1,3/2,\\ldots \\right) using a one-dimensional periodic chain of magnetic atoms as a quantum device. Describing the system within a tight-binding formalism we present an analytical method to unravel the analogy between a one-dimensional magnetic chain and a multi-strand ladder network. This analogy is crucial, and is subsequently exploited to engineer gaps in the energy spectrum by an appropriate choice of the magnetic substrate. We obtain an exact correlation between the magnitude of the spin of the incoming beam of particles and the magnetic moment of the substrate atoms in the chain desired for opening up of a spectral gap. Results of spin polarized transport, calculated within a transfer matrix formalism, are presented for particles having half-integer as well as higher spin states. We find that the chain can be made to act as a quantum device which opens a transmission window only for selected spin components over certain ranges of the Fermi energy, blocking them in the remaining part of the spectrum. The results appear to be robust even when the choice of the substrate atoms deviates substantially from the ideal situation, as verified by extending the ideas to the case of a ‘spin spiral’. Interestingly, the spin spiral geometry, apart from exhibiting the filtering effect, is also seen to act as a device flipping spins—an effect that can be monitored by an interplay of the system size and the period of the spiral. Our scheme is applicable to ultracold quantum gases, and might inspire future experiments in this direction.

  16. Structural and Functional Study of the GlnB22-Insulin Mutant Responsible for Maturity-Onset Diabetes of the Young

    PubMed Central

    Křížková, Květoslava; Veverka, Václav; Maletínská, Lenka; Hexnerová, Rozálie; Brzozowski, Andrzej M.; Jiráček, Jiří; Žáková, Lenka

    2014-01-01

    The insulin gene mutation c.137G>A (R46Q), which changes an arginine at the B22 position of the mature hormone to glutamine, causes the monogenic diabetes variant maturity-onset diabetes of the young (MODY). In MODY patients, this mutation is heterozygous, and both mutant and wild-type (WT) human insulin are produced simultaneously. However, the patients often depend on administration of exogenous insulin. In this study, we chemically synthesized the MODY mutant [GlnB22]-insulin and characterized its biological and structural properties. The chemical synthesis of this insulin analogue revealed that its folding ability is severely impaired. In vitro and in vivo tests showed that its binding affinity and biological activity are reduced (both approximately 20% that of human insulin). Comparison of the solution structure of [GlnB22]-insulin with the solution structure of native human insulin revealed that the most significant structural effect of the mutation is distortion of the B20-B23 β-turn, leading to liberation of the B chain C-terminus from the protein core. The distortion of the B20-B23 β-turn is caused by the extended conformational freedom of the GlnB22 side chain, which is no longer anchored in a hydrogen bonding network like the native ArgB22. The partially disordered [GlnB22]-insulin structure appears to be one reason for the reduced binding potency of this mutant and may also be responsible for its low folding efficiency in vivo. The altered orientation and flexibility of the B20-B23 β-turn may interfere with the formation of disulfide bonds in proinsulin bearing the R46Q (GlnB22) mutation. This may also have a negative effect on the WT proinsulin simultaneously biosynthesized in β-cells and therefore play a major role in the development of MODY in patients producing [GlnB22]-insulin. PMID:25423173

  17. Magnetoelectric control of spin currents

    NASA Astrophysics Data System (ADS)

    Gómez, J. E.; Vargas, J. M.; Avilés-Félix, L.; Butera, A.

    2016-06-01

    The ability to control the spin current injection has been explored on a hybrid magnetoelectric system consisting of a (011)-cut ferroelectric lead magnesium niobate-lead titanate (PMNT) single crystal, a ferromagnetic FePt alloy, and a metallic Pt. With this PMNT/FePt/Pt structure we have been able to control the magnetic field position or the microwave excitation frequency at which the spin pumping phenomenon between FePt and Pt occurs. We demonstrate that the magnetoelectric heterostructure operating in the L-T (longitudinal magnetized-transverse polarized) mode couples the PMNT crystal to the magnetostrictive FePt/Pt bilayer, displaying a strong magnetoelectric coefficient of ˜140 Oe cm kV-1. Our results show that this mechanism can be effectively exploited as a tunable spin current intensity emitter and open the possibility to create an oscillating or a bistable switch to effectively manipulate spin currents.

  18. Spin ejector

    DOEpatents

    Andersen, John A.; Flanigan, John J.; Kindley, Robert J.

    1978-01-01

    The disclosure relates to an apparatus for spin ejecting a body having a flat plate base containing bosses. The apparatus has a base plate and a main ejection shaft extending perpendicularly from the base plate. A compressible cylindrical spring is disposed about the shaft. Bearings are located between the shaft and the spring. A housing containing a helical aperture releasably engages the base plate and surrounds the shaft bearings and the spring. A piston having an aperture follower disposed in the housing aperture is seated on the spring and is guided by the shaft and the aperture. The spring is compressed and when released causes the piston to spin eject the body.

  19. Spin-torque generator engineered by natural oxidation of Cu

    NASA Astrophysics Data System (ADS)

    An, Hongyu; Kageyama, Yuito; Kanno, Yusuke; Enishi, Nagisa; Ando, Kazuya

    2016-10-01

    The spin Hall effect is a spin-orbit coupling phenomenon, which enables electric generation and detection of spin currents. This relativistic effect provides a way for realizing efficient spintronic devices based on electric manipulation of magnetization through spin torque. However, it has been believed that heavy metals are indispensable for the spin-torque generation. Here we show that the spin Hall effect in Cu, a light metal with weak spin-orbit coupling, is significantly enhanced through natural oxidation. We demonstrate that the spin-torque generation efficiency of a Cu/Ni81Fe19 bilayer is enhanced by over two orders of magnitude by tuning the surface oxidation, reaching the efficiency of Pt/ferromagnetic metal bilayers. This finding illustrates a crucial role of oxidation in the spin Hall effect, opening a route for engineering the spin-torque generator by oxygen control and manipulating magnetization without using heavy metals.

  20. Association between the XPG Asp1104His and XPF Arg415Gln Polymorphisms and Risk of Cancer: A Meta-Analysis

    PubMed Central

    Wei, Wu; Liu, Yi; Su, Jiao; Wang, Su-Lan; Shen, Xu-Liang; Yang, Xian-Bin

    2014-01-01

    Backgroud The XPG (xeroderma pigmentosum type G) Asp1104His and XPF (xeroderma pigmentosum type F) Arg415Gln polymorphisms had been implicated in cancer susceptibility. The previous published data on the association between XPG Asp1104His and XPF Arg415Gln polymorphisms and cancer risk remained controversial. Methodology/Principal Findings To derive a more precise estimation of the association between the XPG Asp1104His and XPF Arg415Gln polymorphisms and overall cancer risk, we performed a meta-analysis to investigate the association between cancer susceptibility and XPG Asp1104His (32,162 cases and 39,858 controls from 66 studies) and XPF Arg415Gln polymorphisms (17,864 cases and 20,578 controls from 32 studies) in different inheritance models. We used odds ratios with 95% confidence intervals to assess the strength of the association. Overall, significantly elevated cancer risk was found when all studies were pooled into the meta-analysis of XPG Asp1104His (dominant model: OR = 1.05, 95% CI = 1.00–1.10; Asp/His vs. Asp/Asp: OR = 1.06, 95% CI = 1.01–1.11). In the further stratified and sensitivity analyses, significantly decreased lung cancer risk was found for XPF Arg415Gln (dominant model: OR = 0.82, 95% CI = 0.71–0.96; Arg/Gln versus Arg/Arg: OR = 0.83, 95% CI = 0.71–0.97; additive model: OR = 0.83, 95% CI = 0.72–0.95) and significantly increased other cancer risk was found among hospital-based studies for XPG Asp1104His (dominant model: OR = 1.23, 95% CI = 1.02–1.49). Conclusions/Significance In summary, this meta-analysis suggests that XPF Arg415Gln polymorphism may be associated with decreased lung cancer risk and XPG Asp1104His may be a low-penetrant risk factor in some cancers development. And larger scale primary studies are required to further evaluate the interaction of XPG Asp1104His and XPF Arg415Gln polymorphisms and cancer risk in specific populations. PMID:24802942

  1. Generation of full polarization in ferromagnetic graphene with spin energy gap

    SciTech Connect

    Wu, Qing-Ping; Liu, Zheng-Fang E-mail: aixichen@ecjtu.edu.cn; Liu, Zhi-Min; Chen, Ai-Xi E-mail: aixichen@ecjtu.edu.cn; Xiao, Xian-Bo

    2014-12-22

    We propose a workable scheme for the generation of full spin polarization in ferromagnetic graphene system with strain or Rashba spin-orbit interaction. A spin energy gap can be opened in ferromagnetic graphene system in the presence of strain or Rashba spin-orbit interaction, leading to the full polarization in the spin energy gap. In addition, under the combined modulation of strain and Rashba spin-orbit interaction, the ferromagnetic graphene system can generate significantly large spin-polarized current with a full polarization in the spin energy gap. It is anticipated to apply such a phenomenon to design the electron spin devices based on the graphene.

  2. Functional analysis of the phosphoprotein PII (glnB gene product) in the cyanobacterium Synechococcus sp. strain PCC 7942.

    PubMed Central

    Forchhammer, K; Tandeau de Marsac, N

    1995-01-01

    The PII protein (glnB gene product) in the cyanobacterium Synechococcus sp. strain PCC 7942 signals the cellular N status by being phosphorylated or dephosphorylated at a seryl residue. Here we show that the PII-modifying system responds to the activity of ammonium assimilation via the glutamine synthase-glutamate synthase pathway and to the state of CO2 fixation. To identify possible functions of PII in this microorganism, a PII-deficient mutant was created and its general phenotype was characterized. The analysis shows that the PII protein interferes with the regulation of enzymes required for nitrogen assimilation, although ammonium repression is still detectable in the PII-deficient mutant. We suggest that the phosphorylation and dephosphorylation of PII are part of a complex signal transduction network involved in global nitrogen control in cyanobacteria. In this regulatory process, PII might be involved in mediating the tight coordination between carbon and nitrogen assimilation. PMID:7721695

  3. Effect of ZIP2 Gln/Arg/Leu (rs2234632) polymorphism on zinc homeostasis and inflammatory response following zinc supplementation.

    PubMed

    Giacconi, Robertina; Costarelli, Laura; Malavolta, Marco; Cardelli, Maurizio; Galeazzi, Roberta; Piacenza, Francesco; Gasparini, Nazzarena; Basso, Andrea; Mariani, Erminia; Fulop, Tamas; Rink, Lothar; Dedoussis, George; Herbein, Georges; Jajte, Jolanta; Provinciali, Mauro; Busco, Franco; Mocchegiani, Eugenio

    2015-01-01

    Zinc dyshomeostasis may lead to an augmented production of proinflammatory cytokines promoting chronic inflammation and increasing the susceptibility to age-related diseases. Several studies suggest that the zinc transporter protein ZIP2 may play a relevant role in the immune system especially during zinc deficiency, while a polymorphism on the coding region of ZIP2 gene (Gln/Arg/Leu) has been associated with severe carotid artery disease. The aim of this study is to investigate the role of ZIP2 SNP on zinc and inflammatory status in 1090 elderly healthy free-living subjects enrolled in the ZincAge project and to assess the effect of zinc supplementation on zinc status, inflammatory mediators, and zinc transporter expression depending on ZIP2 genotype. ZIP2 Leu- (Arg43Arg) carriers showed enhanced IL-6, TNF-α, and RANTES plasma levels associated with decreased free cytosolic zinc in PBMCs and an upregulation of zinc transporters ZIP2, ZIP8, and Znt1. Moreover, Leu- subjects displayed significant decrement of inflammatory mediators such as MCP-1, TNF-α, and RANTES following zinc supplementation. In summary, this investigation provides new evidence on the effect of ZIP2 Gln/Arg/Leu polymorphism on proinflammatory mediators and zinc homeostasis in elderly population with a more pronounced anti-inflammatory effect of zinc supplementation in subjects carrying ZIP2 Leu- (Arg43Arg) genotype. These novel findings could be useful in identifying elderly subjects who may benefit of zinc intervention to decrease the inflammatory status and to prevent or delay the development of age-related diseases.

  4. Gln27Glu polymorphism of the beta2 adrenergic receptor gene in healthy Japanese men is associated with the change of fructosamine level caused by exercise.

    PubMed

    Kahara, Toshio; Hayakawa, Tetsuo; Nagai, Yukihiro; Shimizu, Akiko; Takamura, Toshinari

    2004-06-01

    Adrenaline plays a major role in the maintenance of blood glucose level by promoting glycogenolysis during prolonged exercise predominantly via the beta2 adrenergic receptor (beta2AR). Because beta2ARs are mainly present in the muscle and liver, beta2AR gene polymorphism may affect changes in glucose metabolism caused by exercise. We, therefore, investigated the effect of beta2AR gene polymorphism on glucose metabolism in healthy Japanese men. The study group consisted of 124 unrelated healthy Japanese men who were aged 21-69 years (mean +/- S.D.: 45.3+/-11.7). They participated in an exercise program which was defined as low-moderate intensity at 20-60min per day, 2-3 days per week for 3 months. The genotype of Gln27Gln was detected in 109 subjects (87.9%), of Gln27Glu in 15 subjects (12.1%) and of Glu27Glu in none, and that of Arg16Arg, Arg16Gly and Gly16Gly in 32 (25.8%), 79 (63.7%) and 13 subjects (10.5%), respectively. There was no association between these polymorphisms and the metabolic characteristics at baseline. The change in fructosamine level as a result of exercise showed that the carrier of the Glu allele had a better response to exercise than the non-carrier. In conclusion, Gln27Glu polymorphism was associated with the change in fructosamine level resulting from exercise, but not Arg16Gly polymorphism.

  5. Overlapping binding of PhoP and AfsR to the promoter region of glnR in Streptomyces coelicolor.

    PubMed

    Santos-Beneit, Fernando; Rodríguez-García, Antonio; Martín, Juan F

    2012-10-12

    Growth of soil bacteria is often limited by the availability of essential nutrients such as carbon, nitrogen and phosphate. The reaction to a specific nutrient starvation triggers interconnected responses to equilibrate the metabolism. It is known that PhoP (response regulator involved in phosphate control) specifically binds to several promoters of genes involved in nitrogen metabolism which are also regulated by GlnR (regulator involved in nitrogen control). In this article we report a novel cross-talk between GlnR and the SARP-like regulator, AfsR. AfsR binds to some PhoP-regulated promoters including those of afsS (a small regulatory protein of secondary metabolism), pstS (a component of the phosphate transport system) and phoRP (encoding the two component system itself). We have characterized the regulation exerted upon the nitrogen regulator glnR gene by AfsR, using EMSA and DNase I footprinting assays as well as in vivo expression studies with ΔphoP, ΔafsR and ΔafsR-ΔphoP mutants. Both PhoP and AfsR proteins are able to bind to overlapping regions within the glnR promoter producing different effects. This work demonstrates a cross-talk of three different regulators of both primary and secondary metabolism.

  6. Effect of ATP and 2-oxoglutarate on the in vitro interaction between the NifA GAF domain and the GlnB protein of Azospirillum brasilense.

    PubMed

    Sotomaior, P; Araújo, L M; Nishikawa, C Y; Huergo, L F; Monteiro, R A; Pedrosa, F O; Chubatsu, L S; Souza, E M

    2012-12-01

    Azospirillum brasilense is a diazotroph that associates with important agricultural crops and thus has potential to be a nitrogen biofertilizer. The A. brasilense transcription regulator NifA, which seems to be constitutively expressed, activates the transcription of nitrogen fixation genes. It has been suggested that the nitrogen status-signaling protein GlnB regulates NifA activity by direct interaction with the NifA N-terminal GAF domain, preventing the inhibitory effect of this domain under conditions of nitrogen fixation. In the present study, we show that an N-terminal truncated form of NifA no longer required GlnB for activity and lost regulation by ammonium. On the other hand, in trans co-expression of the N-terminal GAF domain inhibited the N-truncated protein in response to fixed nitrogen levels. We also used pull-down assays to show in vitro interaction between the purified N-terminal GAF domain of NifA and the GlnB protein. The results showed that A. brasilense GlnB interacts directly with the NifA N-terminal domain and this interaction is dependent on the presence of ATP and 2-oxoglutarate.

  7. Realization of a spin-wave multiplexer.

    PubMed

    Vogt, K; Fradin, F Y; Pearson, J E; Sebastian, T; Bader, S D; Hillebrands, B; Hoffmann, A; Schultheiss, H

    2014-04-23

    Recent developments in the field of spin dynamics--like the interaction of charge and heat currents with magnons, the quasi-particles of spin waves--opens the perspective for novel information processing concepts and potential applications purely based on magnons without the need of charge transport. The challenges related to the realization of advanced concepts are the spin-wave transport in two-dimensional structures and the transfer of existing demonstrators to the micro- or even nanoscale. Here we present the experimental realization of a microstructured spin-wave multiplexer as a fundamental building block of a magnon-based logic. Our concept relies on the generation of local Oersted fields to control the magnetization configuration as well as the spin-wave dispersion relation to steer the spin-wave propagation in a Y-shaped structure. Thus, the present work illustrates unique features of magnonic transport as well as their possible utilization for potential technical applications.

  8. Spin valve effect of the interfacial spin accumulation in yttrium iron garnet/platinum bilayers

    SciTech Connect

    Jin, Lichuan; Zhang, Dainan; Zhang, Huaiwu Tang, Xiaoli; Bai, Feiming; Zhong, Zhiyong; Fan, Xin; Xiao, John Q.

    2014-09-29

    We report the spin valve effect in yttrium iron garnet/platinum (YIG/Pt) bilayers. The spin Hall effect (SHE) generates spin accumulation at the YIG/Pt interface and can be opened/closed by magnetization switching in the electrical insulator YIG. The interfacial spin accumulation was measured in both YIG/Pt and YIG/Cu/Pt structures using a planar Hall configuration. The spin valve effect remained, even after a 2 nm thick Cu layer was inserted between the YIG and Pt layers, which aimed to exclude the induced magnetization at the YIG/Pt interface. The transverse Hall voltage and switching field were dependent on the applied charge current density. The origin of this behavior can be explained by the SHE induced torque exerted on the domain wall, caused by the transfer of the spin angular momentum from the spin-polarized current to the YIG magnetic moment.

  9. A systematic approach to interpreting Hanle spin precession data in non-local spin valves

    NASA Astrophysics Data System (ADS)

    Swartz, Adrian G.; McCreary, Kathleen M.; Han, Wei; Wen, Hua; Kawakami, Roland K.

    2013-09-01

    Graphene's two dimensional nature and high surface sensitivity have led to fascinating predictions regarding induced spin-based phenomena through careful control of adsorbates on the graphene surface, including the extrinsic spin Hall effect, band gap opening, and induced magnetism. By taking advantage of atomic scale control provided by MBE, we have investigated submonolayer deposition of adsorbates and their interactions with graphene. Spin transport measurements performed in-situ during systematic introduction of atomic hydrogen demonstrated that hydrogen adsorbed on graphene forms magnetic moments that couple via exchange to the injected spin current. The effects of induced magnetic moments are evident in the non-local magnetoresistance and Hanle spin precession. Exchange coupling between the injected spin current and the induced moments impact the Hanle curves through an effective exchange field leading to new interpretations of Hanle spin precession data and analysis. Here we present a simple procedure in which Hanle curves can be reliably interpreted.

  10. Detection of atomic spin labels in a lipid bilayer using a single-spin nanodiamond probe

    PubMed Central

    Kaufmann, Stefan; Simpson, David A.; Hall, Liam T.; Perunicic, Viktor; Senn, Philipp; Steinert, Steffen; McGuinness, Liam P.; Johnson, Brett C.; Ohshima, Takeshi; Caruso, Frank; Wrachtrup, Jörg; Scholten, Robert E.; Mulvaney, Paul; Hollenberg, Lloyd

    2013-01-01

    Magnetic field fluctuations arising from fundamental spins are ubiquitous in nanoscale biology, and are a rich source of information about the processes that generate them. However, the ability to detect the few spins involved without averaging over large ensembles has remained elusive. Here, we demonstrate the detection of gadolinium spin labels in an artificial cell membrane under ambient conditions using a single-spin nanodiamond sensor. Changes in the spin relaxation time of the sensor located in the lipid bilayer were optically detected and found to be sensitive to near-individual (4 ± 2) proximal gadolinium atomic labels. The detection of such small numbers of spins in a model biological setting, with projected detection times of 1 s [corresponding to a sensitivity of ∼5 Gd spins per Hz1/2], opens a pathway for in situ nanoscale detection of dynamical processes in biology. PMID:23776230

  11. Tensor spin observables and spin stucture at low Q{sup 2}

    SciTech Connect

    Slifer, K.

    2015-04-10

    We discuss recent spin structure results from Jefferson Lab, and outline an emerging program to study tensor spin observables using solid deuteron targets. These new experiments open the potential to study hidden color, the tensor nature of short range correlations, and to probe for exotic gluonic states.

  12. High spin isomer beam line at RIKEN

    SciTech Connect

    Kishida, T.; Ideguchi, E.; Wu, H.Y.

    1996-12-31

    Nuclear high spin states have been the subject of extensive experimental and theoretical studies. For the production of high spin states, fusion reactions are usually used. The orbital angular momentum brought in the reaction is changed into the nuclear spin of the compound nucleus. However, the maximum induced angular momentum is limited in this mechanism by the maximum impact parameter of the fusion reaction and by the competition with fission reactions. It is, therefore, difficult to populate very high spin states, and as a result, large {gamma}-detector arrays have been developed in order to detect subtle signals from such very high spin states. The use of high spin isomers in the fusion reactions can break this limitation because the high spin isomers have their intrinsic angular momentum, which can bring the additional angular momentum without increasing the excitation energy. There are two methods to use the high spin isomers for secondary reactions: the use of the high spin isomers as a target and that as a beam. A high spin isomer target has already been developed and used for several experiments. But this method has an inevitable shortcoming that only {open_quotes}long-lived{close_quotes} isomers can be used for a target: {sup 178}Hf{sup m2} (16{sup +}) with a half-life of 31 years in the present case. By developing a high spin isomer beam, the authors can utilize various short-lived isomers with a short half-life around 1 {mu}s. The high spin isomer beam line of RIKEN Accelerator Facility is a unique apparatus in the world which provides a high spin isomer as a secondary beam. The combination of fusion-evaporation reaction and inverse kinematics are used to produce high spin isomer beams; in particular, the adoption of `inverse kinematics` is essential to use short-lived isomers as a beam.

  13. Arg16Gly and Gln27Glu β2 adrenergic polymorphisms influence cardiac autonomic modulation and baroreflex sensitivity in healthy young Brazilians

    PubMed Central

    Atala, Magda M; Goulart, Alessandra; Guerra, Grazia M; Mostarda, Cristiano; Rodrigues, Bruno; Mello, Priscila R; Casarine, Dulce E; Irigoyen, Maria-Claudia; Pereira, Alexandre C; Consolim-Colombo, Fernanda M

    2015-01-01

    The association between functional β2 adrenergic receptor (β2-AR) polymorphisms and cardiac autonomic modulation is still unclear. Thus, two common polymorphisms in the β2-AR gene (Gln27Glu β2 and Arg16Gly β2) were studied to determine whether they might affect tonic and reflex cardiac sympathetic activity in healthy young subjects. A total of 213 healthy young white subjects of both genders (53% female), aged 18-30 years (23.5±3.4 y), had their continuous blood pressure curves noninvasively recorded by Finometer at baseline, and other hemodynamic parameters, as cardiac autonomic modulation, baroreflex sensitivity, and allele, genotype, and diplotype frequencies calculated. Associations were made between Arg16Gly β2 and Gln27Glu β2 polymorphisms and between β2-AR diplotypes and all variables. The heart rate was significantly lower (P<0.001) in the presence of homozygous Arg/Arg alleles (60.9±1.5 bpm) than in that of Arg/Gly heterozygotes (65.9±1.0 bpm) or Gly/Gly homozygotes (66.3±1.2 bpm). Homozygous carriers of Arg16 allele had an alpha index (19.2±1.3) significantly higher (P<0.001) than that of the subjects with the Gly allele Gly/Gly (14.5±0.7) or Arg/Gly (14.6±0.7). Furthermore, the recessive Glu27Glu and the heterozygous Gln27Glu genotypes had a higher percentage of low-frequency components (LF%) than the homozygous Gln27Gln (15.1% vs. 16.0% vs. 8.2%, P=0.03, respectively). In healthy young subjects, the presence of β2-AR Arg16 allele in a recessive model was associated with higher baroreflex sensitivity, and increased parasympathetic modulation in studied individuals. PMID:25755837

  14. Crystal Structure of a Thermostable Alanine Racemase from Thermoanaerobacter tengcongensis MB4 Reveals the Role of Gln360 in Substrate Selection

    PubMed Central

    Wang, Xiaoyan; Xu, Shujing; Ju, Jiansong; Xu, Xiaoling

    2015-01-01

    Pyridoxal 5’-phosphate (PLP) dependent alanine racemase catalyzes racemization of L-Ala to D-Ala, a key component of the peptidoglycan network in bacterial cell wall. It has been extensively studied as an important antimicrobial drug target due to its restriction in eukaryotes. However, many marketed alanine racemase inhibitors also act on eukaryotic PLP-dependent enzymes and cause side effects. A thermostable alanine racemase (AlrTt) from Thermoanaerobacter tengcongensis MB4 contains an evolutionarily non-conserved residue Gln360 in inner layer of the substrate entryway, which is supposed to be a key determinant in substrate specificity. Here we determined the crystal structure of AlrTt in complex with L-Ala at 2.7 Å resolution, and investigated the role of Gln360 by saturation mutagenesis and kinetic analysis. Compared to typical bacterial alanine racemase, presence of Gln360 and conformational changes of active site residues disrupted the hydrogen bonding interactions necessary for proper PLP immobilization, and decreased both the substrate affinity and turnover number of AlrTt. However, it could be complemented by introduction of hydrophobic amino acids at Gln360, through steric blocking and interactions with a hydrophobic patch near active site pocket. These observations explained the low racemase activity of AlrTt, revealed the essential role of Gln360 in substrate selection, and its preference for hydrophobic amino acids especially Tyr in bacterial alanine racemization. Our work will contribute new insights into the alanine racemization mechanism for antimicrobial drug development. PMID:26218070

  15. A rare P2X7 variant Arg307Gln with absent pore formation function protects against neuroinflammation in multiple sclerosis.

    PubMed

    Gu, Ben J; Field, Judith; Dutertre, Sébastien; Ou, Amber; Kilpatrick, Trevor J; Lechner-Scott, Jeannette; Scott, Rodney; Lea, Rodney; Taylor, Bruce V; Stankovich, Jim; Butzkueven, Helmut; Gresle, Melissa; Laws, Simon M; Petrou, Steven; Hoffjan, Sabine; Akkad, Denis A; Graham, Colin A; Hawkins, Stanley; Glaser, Anna; Bedri, Sahl Khalid; Hillert, Jan; Matute, Carlos; Antiguedad, Alfredo; Wiley, James S

    2015-10-01

    Multiple sclerosis (MS) is a chronic relapsing-remitting inflammatory disease of the central nervous system characterized by oligodendrocyte damage, demyelination and neuronal death. Genetic association studies have shown a 2-fold or greater prevalence of the HLA-DRB1*1501 allele in the MS population compared with normal Caucasians. In discovery cohorts of Australasian patients with MS (total 2941 patients and 3008 controls), we examined the associations of 12 functional polymorphisms of P2X7, a microglial/macrophage receptor with proinflammatory effects when activated by extracellular adenosine triphosphate (ATP). In discovery cohorts, rs28360457, coding for Arg307Gln was associated with MS and combined analysis showed a 2-fold lower minor allele frequency compared with controls (1.11% for MS and 2.15% for controls, P = 0.0000071). Replication analysis of four independent European MS case-control cohorts (total 2140 cases and 2634 controls) confirmed this association [odds ratio (OR) = 0.69, P = 0.026]. A meta-analysis of all Australasian and European cohorts indicated that Arg307Gln confers a 1.8-fold protective effect on MS risk (OR = 0.57, P = 0.0000024). Fresh human monocytes heterozygous for Arg307Gln have >85% loss of 'pore' function of the P2X7 receptor measured by ATP-induced ethidium uptake. Analysis shows Arg307Gln always occurred with 270His suggesting a single 307Gln-270His haplotype that confers dominant negative effects on P2X7 function and protection against MS. Modeling based on the homologous zP2X4 receptor showed Arg307 is located in a region rich in basic residues located only 12 Å from the ligand binding site. Our data show the protective effect against MS of a rare genetic variant of P2RX7 with heterozygotes showing near absent proinflammatory 'pore' function.

  16. Snell's Law for Spin Waves

    NASA Astrophysics Data System (ADS)

    Stigloher, J.; Decker, M.; Körner, H. S.; Tanabe, K.; Moriyama, T.; Taniguchi, T.; Hata, H.; Madami, M.; Gubbiotti, G.; Kobayashi, K.; Ono, T.; Back, C. H.

    2016-07-01

    We report the experimental observation of Snell's law for magnetostatic spin waves in thin ferromagnetic Permalloy films by imaging incident, refracted, and reflected waves. We use a thickness step as the interface between two media with different dispersion relations. Since the dispersion relation for magnetostatic waves in thin ferromagnetic films is anisotropic, deviations from the isotropic Snell's law known in optics are observed for incidence angles larger than 25 ° with respect to the interface normal between the two magnetic media. Furthermore, we can show that the thickness step modifies the wavelength and the amplitude of the incident waves. Our findings open up a new way of spin wave steering for magnonic applications.

  17. Spin pumping with coherent elastic waves

    NASA Astrophysics Data System (ADS)

    Weiler, M.; Huebl, H.; Goerg, F. S.; Czeschka, F. D.; Gross, R.; Goennenwein, S. T. B.

    2012-02-01

    The generation and detection of pure spin currents is an important topic for spintronic applications. Spin currents may be generated, e.g., via spin pumping. In this approach, a precessing magnetization relaxes via the emission of a spin current. Conventionally, electromagnetic waves, i.e. microwave photons, are used to drive the magnetization precession. We here show that a spin current can also be pumped by means of an acoustic wave, i.e. microwave phonons. In the experiments, coherent surface acoustic wave (SAW) phonons with a frequency of 1.55 GHz traverse a ferromagnetic thin film/normal metal (Co/Pt) bilayer. The SAW phonons drive the resonant magnetization precession via magnetoelastic coupling [1]. We use the inverse spin Hall voltage in the Pt film as a measure for the generated spin current and record its evolution as a function of time and external magnetic field magnitude and orientation. Our experiments show that a spin current is generated in the exclusive presence of a resonant elastic excitation. This establishes acoustic spin pumping as a resonant analogue to the spin Seebeck effect and opens intriguing perspectives for applications in, e.g., micromechanical resonators. [4pt] [1] M. Weiler et al., Phys. Rev. Lett. 106, 117601 (2011)

  18. spin pumping occurred under nonlinear spin precession

    NASA Astrophysics Data System (ADS)

    Zhou, Hengan; Fan, Xiaolong; Ma, Li; Zhou, Shiming; Xue, Desheng

    Spin pumping occurs when a pure-spin current is injected into a normal metal thin layer by an adjacent ferromagnetic metal layer undergoing ferromagnetic resonance, which can be understood as the inverse effect of spin torque, and gives access to the physics of magnetization dynamics and damping. An interesting question is that whether spin pumping occurring under nonlinear spin dynamics would differ from linear case. It is known that nonlinear spin dynamics differ distinctly from linear response, a variety of amplitude dependent nonlinear effect would present. It has been found that for spin precession angle above a few degrees, nonlinear damping term would present and dominated the dynamic energy/spin-moment dissipation. Since spin pumping are closely related to the damping process, it is interesting to ask whether the nonlinear damping term could be involved in spin pumping process. We studied the spin pumping effect occurring under nonlinear spin precession. A device which is a Pt/YIG microstrip coupled with coplanar waveguide was used. High power excitation resulted in spin precession entering in a nonlinear regime. Foldover resonance lineshape and nonlinear damping have been observed. Based on those nonlinear effects, we determined the values of the precession cone angles, and the maximum cone angle can reach a values as high as 21.5 degrees. We found that even in nonlinear regime, spin pumping is still linear, which means the nonlinear damping and foldover would not affect spin pumping process.

  19. Role of VicRKX and GlnR in pH-Dependent Regulation of the Streptococcus salivarius 57.I Urease Operon

    PubMed Central

    Huang, Szu-Chuan

    2016-01-01

    ABSTRACT Ureolysis by Streptococcus salivarius is critical for pH homeostasis of dental plaque and prevention of dental caries. The expression of S. salivarius urease is induced by acidic pH and carbohydrate excess. The differential expression is mainly controlled at the transcriptional level from the promoter 5′ to ureI (pureI). Our previous study demonstrates that CodY represses pureI by binding to a CodY box 5′ to pureI, and the repression is more pronounced in cells grown at pH 7 than in cells grown at pH 5.5. Recent sequence analysis revealed a putative VicR consensus and two GlnR boxes 5′ to the CodY box. The results of DNA affinity precipitation assay, electrophoretic mobility shift assay, and chromatin immunoprecipitation-PCR analysis confirmed that both GlnR and VicR interact with the predicted binding sites in pureI. Isogenic mutant strains (vicRKX null and glnR null) and their derivatives (harboring S. salivarius vicRKX and glnR, respectively) were generated in a recombinant Streptococcus gordonii strain harboring a pureI-chloramphenicol acetyltransferase gene fusion on gtfG to investigate the regulation of VicR and GlnR. The results indicated that GlnR activates, whereas VicR represses, pureI expression. The repression by VicR is more pronounced at pH 7, whereas GlnR is more active at pH 5.5. Furthermore, the VicR box acts as an upstream element to enhance pureI expression in the absence of the cognate regulator. The overall regulation by CodY, VicR, and GlnR in response to pH ensures an optimal expression of urease in S. salivarius when the enzyme is most needed. IMPORTANCE Dental plaque rich in alkali-producing bacteria is less cariogenic, and thus, urease-producing Streptococcus salivarius has been considered as a therapeutic agent for dental caries control. Being one of the few ureolytic microbes in the oral cavity, S. salivarius strain 57.I promotes its competitiveness by mass-producing urease only at acidic growth pH. Here, we

  20. Role of VicRKX and GlnR in pH-Dependent Regulation of the Streptococcus salivarius 57.I Urease Operon.

    PubMed

    Huang, Szu-Chuan; Chen, Yi-Ywan M

    2016-01-01

    Ureolysis by Streptococcus salivarius is critical for pH homeostasis of dental plaque and prevention of dental caries. The expression of S. salivarius urease is induced by acidic pH and carbohydrate excess. The differential expression is mainly controlled at the transcriptional level from the promoter 5' to ureI (p ureI ). Our previous study demonstrates that CodY represses p ureI by binding to a CodY box 5' to p ureI , and the repression is more pronounced in cells grown at pH 7 than in cells grown at pH 5.5. Recent sequence analysis revealed a putative VicR consensus and two GlnR boxes 5' to the CodY box. The results of DNA affinity precipitation assay, electrophoretic mobility shift assay, and chromatin immunoprecipitation-PCR analysis confirmed that both GlnR and VicR interact with the predicted binding sites in p ureI . Isogenic mutant strains (vicRKX null and glnR null) and their derivatives (harboring S. salivarius vicRKX and glnR, respectively) were generated in a recombinant Streptococcus gordonii strain harboring a p ureI-chloramphenicol acetyltransferase gene fusion on gtfG to investigate the regulation of VicR and GlnR. The results indicated that GlnR activates, whereas VicR represses, p ureI expression. The repression by VicR is more pronounced at pH 7, whereas GlnR is more active at pH 5.5. Furthermore, the VicR box acts as an upstream element to enhance p ureI expression in the absence of the cognate regulator. The overall regulation by CodY, VicR, and GlnR in response to pH ensures an optimal expression of urease in S. salivarius when the enzyme is most needed. IMPORTANCE Dental plaque rich in alkali-producing bacteria is less cariogenic, and thus, urease-producing Streptococcus salivarius has been considered as a therapeutic agent for dental caries control. Being one of the few ureolytic microbes in the oral cavity, S. salivarius strain 57.I promotes its competitiveness by mass-producing urease only at acidic growth pH. Here, we

  1. Role of VicRKX and GlnR in pH-Dependent Regulation of the Streptococcus salivarius 57.I Urease Operon.

    PubMed

    Huang, Szu-Chuan; Chen, Yi-Ywan M

    2016-01-01

    Ureolysis by Streptococcus salivarius is critical for pH homeostasis of dental plaque and prevention of dental caries. The expression of S. salivarius urease is induced by acidic pH and carbohydrate excess. The differential expression is mainly controlled at the transcriptional level from the promoter 5' to ureI (p ureI ). Our previous study demonstrates that CodY represses p ureI by binding to a CodY box 5' to p ureI , and the repression is more pronounced in cells grown at pH 7 than in cells grown at pH 5.5. Recent sequence analysis revealed a putative VicR consensus and two GlnR boxes 5' to the CodY box. The results of DNA affinity precipitation assay, electrophoretic mobility shift assay, and chromatin immunoprecipitation-PCR analysis confirmed that both GlnR and VicR interact with the predicted binding sites in p ureI . Isogenic mutant strains (vicRKX null and glnR null) and their derivatives (harboring S. salivarius vicRKX and glnR, respectively) were generated in a recombinant Streptococcus gordonii strain harboring a p ureI-chloramphenicol acetyltransferase gene fusion on gtfG to investigate the regulation of VicR and GlnR. The results indicated that GlnR activates, whereas VicR represses, p ureI expression. The repression by VicR is more pronounced at pH 7, whereas GlnR is more active at pH 5.5. Furthermore, the VicR box acts as an upstream element to enhance p ureI expression in the absence of the cognate regulator. The overall regulation by CodY, VicR, and GlnR in response to pH ensures an optimal expression of urease in S. salivarius when the enzyme is most needed. IMPORTANCE Dental plaque rich in alkali-producing bacteria is less cariogenic, and thus, urease-producing Streptococcus salivarius has been considered as a therapeutic agent for dental caries control. Being one of the few ureolytic microbes in the oral cavity, S. salivarius strain 57.I promotes its competitiveness by mass-producing urease only at acidic growth pH. Here, we

  2. The Impact of LEP G-2548A and LEPR Gln223Arg Polymorphisms on Adiposity, Leptin, and Leptin-Receptor Serum Levels in a Mexican Mestizo Population.

    PubMed

    Chavarria-Avila, Efraín; Vázquez-Del Mercado, Mónica; Gomez-Bañuelos, Eduardo; Ruiz-Quezada, Sandra-Luz; Castro-Albarran, Jorge; Sánchez-López, Lizeth; Martín-Marquez, Beatriz Teresita; Navarro-Hernández, Rosa-Elena

    2015-01-01

    The polymorphisms in leptin (LEP G-2548A) and leptin-receptor (LEPR Gln223Arg) seem to influence obesity and lipid metabolism among others. The aim of this study was to investigate the effect of these polymorphisms on adiposity, leptin (sLeptin), and leptin-receptor (sLeptin-receptor) serum concentrations as well as inflammation markers. We included 382 adults originally from Western Mexico. They were genotyped by PCR-RFLP. Obese individuals showed higher sLeptin (58.2 ± 31.35 ng/mL) but lower sLeptin-receptor (12.6 ± 3.74 ng/mL) levels than normal weight ones (17.6 ± 14.62 ng/mL, 17.4 ± 4.62 ng/mL, resp.), P < 0.001. Obese subjects carriers of Arg/Arg genotype had more (P = 0.016) sLeptin-receptor (14.7 ± 4.96 ng/mL) and less (P = 0.004) sLeptin (44.0 ± 28.12 ng/mL) levels than Gln/Gln genotype (11.0 ± 2.92 ng/mL, 80.3 ± 33.24 ng/mL, resp.). Body fat mass was lower (P from 0.003 to 0.045) for A/A (36.5% ± 6.80) or Arg/Arg (36.8% ± 6.82) genotypes with respect to G/G (41.3% ± 5.52) and G/A (41.6% ± 5.61) or Gln/Gln (43.7% ± 4.74) and Gln/Arg (41.0% ± 5.52) genotypes carriers. Our results suggest that LEP -2548A and LEPR 223Arg could be genetic markers of less body fat mass accumulation in obese subjects from Western Mexico.

  3. The Impact of LEP G-2548A and LEPR Gln223Arg Polymorphisms on Adiposity, Leptin, and Leptin-Receptor Serum Levels in a Mexican Mestizo Population

    PubMed Central

    Chavarria-Avila, Efraín; Gomez-Bañuelos, Eduardo; Ruiz-Quezada, Sandra-Luz; Castro-Albarran, Jorge; Sánchez-López, Lizeth; Martín-Marquez, Beatriz Teresita; Navarro-Hernández, Rosa-Elena

    2015-01-01

    The polymorphisms in leptin (LEP G-2548A) and leptin-receptor (LEPR Gln223Arg) seem to influence obesity and lipid metabolism among others. The aim of this study was to investigate the effect of these polymorphisms on adiposity, leptin (sLeptin), and leptin-receptor (sLeptin-receptor) serum concentrations as well as inflammation markers. We included 382 adults originally from Western Mexico. They were genotyped by PCR-RFLP. Obese individuals showed higher sLeptin (58.2 ± 31.35 ng/mL) but lower sLeptin-receptor (12.6 ± 3.74 ng/mL) levels than normal weight ones (17.6 ± 14.62 ng/mL, 17.4 ± 4.62 ng/mL, resp.), P < 0.001. Obese subjects carriers of Arg/Arg genotype had more (P = 0.016) sLeptin-receptor (14.7 ± 4.96 ng/mL) and less (P = 0.004) sLeptin (44.0 ± 28.12 ng/mL) levels than Gln/Gln genotype (11.0 ± 2.92 ng/mL, 80.3 ± 33.24 ng/mL, resp.). Body fat mass was lower (P from 0.003 to 0.045) for A/A (36.5% ± 6.80) or Arg/Arg (36.8% ± 6.82) genotypes with respect to G/G (41.3% ± 5.52) and G/A (41.6% ± 5.61) or Gln/Gln (43.7% ± 4.74) and Gln/Arg (41.0% ± 5.52) genotypes carriers. Our results suggest that LEP -2548A and LEPR 223Arg could be genetic markers of less body fat mass accumulation in obese subjects from Western Mexico. PMID:26064921

  4. GlnD Is Essential for NifA Activation, NtrB/NtrC-Regulated Gene Expression, and Posttranslational Regulation of Nitrogenase Activity in the Photosynthetic, Nitrogen-Fixing Bacterium Rhodospirillum rubrum

    PubMed Central

    Zhang, Yaoping; Pohlmann, Edward L.; Roberts, Gary P.

    2005-01-01

    GlnD is a bifunctional uridylyltransferase/uridylyl-removing enzyme and is thought to be the primary sensor of nitrogen status in the cell. It plays an important role in nitrogen assimilation and metabolism by reversibly regulating the modification of PII proteins, which in turn regulate a variety of other proteins. We report here the characterization of glnD mutants from the photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum and the analysis of the roles of GlnD in the regulation of nitrogen fixation. Unlike glnD mutations in Azotobacter vinelandii and some other bacteria, glnD deletion mutations are not lethal in R. rubrum. Such mutants grew well in minimal medium with glutamate as the sole nitrogen source, although they grew slowly with ammonium as the sole nitrogen source (MN medium) and were unable to fix N2. The slow growth in MN medium is apparently due to low glutamine synthetase activity, because a ΔglnD strain with an altered glutamine synthetase that cannot be adenylylated can grow well in MN medium. Various mutation and complementation studies were used to show that the critical uridylyltransferase activity of GlnD is localized to the N-terminal region. Mutants with intermediate levels of uridylyltransferase activity are differentially defective in nif gene expression, the posttranslational regulation of nitrogenase, and NtrB/NtrC function, indicating the complexity of the physiological role of GlnD. These results have implications for the interpretation of results obtained with GlnD in many other organisms. PMID:15687189

  5. Adiabatic quantum computing with spin qubits hosted by molecules.

    PubMed

    Yamamoto, Satoru; Nakazawa, Shigeaki; Sugisaki, Kenji; Sato, Kazunobu; Toyota, Kazuo; Shiomi, Daisuke; Takui, Takeji

    2015-01-28

    A molecular spin quantum computer (MSQC) requires electron spin qubits, which pulse-based electron spin/magnetic resonance (ESR/MR) techniques can afford to manipulate for implementing quantum gate operations in open shell molecular entities. Importantly, nuclear spins, which are topologically connected, particularly in organic molecular spin systems, are client qubits, while electron spins play a role of bus qubits. Here, we introduce the implementation for an adiabatic quantum algorithm, suggesting the possible utilization of molecular spins with optimized spin structures for MSQCs. We exemplify the utilization of an adiabatic factorization problem of 21, compared with the corresponding nuclear magnetic resonance (NMR) case. Two molecular spins are selected: one is a molecular spin composed of three exchange-coupled electrons as electron-only qubits and the other an electron-bus qubit with two client nuclear spin qubits. Their electronic spin structures are well characterized in terms of the quantum mechanical behaviour in the spin Hamiltonian. The implementation of adiabatic quantum computing/computation (AQC) has, for the first time, been achieved by establishing ESR/MR pulse sequences for effective spin Hamiltonians in a fully controlled manner of spin manipulation. The conquered pulse sequences have been compared with the NMR experiments and shown much faster CPU times corresponding to the interaction strength between the spins. Significant differences are shown in rotational operations and pulse intervals for ESR/MR operations. As a result, we suggest the advantages and possible utilization of the time-evolution based AQC approach for molecular spin quantum computers and molecular spin quantum simulators underlain by sophisticated ESR/MR pulsed spin technology.

  6. Water proton spin saturation affects measured protein backbone 15 N spin relaxation rates

    NASA Astrophysics Data System (ADS)

    Chen, Kang; Tjandra, Nico

    2011-12-01

    Protein backbone 15N NMR spin relaxation rates are useful in characterizing the protein dynamics and structures. To observe the protein nuclear-spin resonances a pulse sequence has to include a water suppression scheme. There are two commonly employed methods, saturating or dephasing the water spins with pulse field gradients and keeping them unperturbed with flip-back pulses. Here different water suppression methods were incorporated into pulse sequences to measure 15N longitudinal T1 and transversal rotating-frame T1ρ spin relaxation. Unexpectedly the 15N T1 relaxation time constants varied significantly with the choice of water suppression method. For a 25-kDa Escherichiacoli. glutamine binding protein (GlnBP) the T1 values acquired with the pulse sequence containing a water dephasing gradient are on average 20% longer than the ones obtained using a pulse sequence containing the water flip-back pulse. In contrast the two T1ρ data sets are correlated without an apparent offset. The average T1 difference was reduced to 12% when the experimental recycle delay was doubled, while the average T1 values from the flip-back measurements were nearly unchanged. Analysis of spectral signal to noise ratios ( s/ n) showed the apparent slower 15N relaxation obtained with the water dephasing experiment originated from the differences in 1H N recovery for each relaxation time point. This in turn offset signal reduction from 15N relaxation decay. The artifact becomes noticeable when the measured 15N relaxation time constant is comparable to recycle delay, e.g., the 15N T1 of medium to large proteins. The 15N relaxation rates measured with either water suppression schemes yield reasonable fits to the structure. However, data from the saturated scheme results in significantly lower Model-Free order parameters (< S2> = 0.81) than the non-saturated ones (< S2> = 0.88), indicating such order parameters may be previously underestimated.

  7. Ultrafast and Gigantic Spin Injection in Semiconductors.

    PubMed

    Battiato, M; Held, K

    2016-05-13

    The injection of spin currents in semiconductors is one of the big challenges of spintronics. Motivated by the ultrafast demagnetization and spin injection into metals, we propose an alternative femtosecond route based on the laser excitation of superdiffusive spin currents in a ferromagnet such as Ni. Our calculations show that even though only a fraction of the current crosses the Ni-Si interface, the laser-induced creation of strong transient electrical fields at a ferromagnet-semiconductor interface allows for the injection of chargeless spin currents with record spin polarizations of 80%. Beyond that they are pulsed on the time scale of 100 fs which opens the door for new experiments and ultrafast spintronics. PMID:27232029

  8. Ultrafast and Gigantic Spin Injection in Semiconductors

    NASA Astrophysics Data System (ADS)

    Battiato, M.; Held, K.

    2016-05-01

    The injection of spin currents in semiconductors is one of the big challenges of spintronics. Motivated by the ultrafast demagnetization and spin injection into metals, we propose an alternative femtosecond route based on the laser excitation of superdiffusive spin currents in a ferromagnet such as Ni. Our calculations show that even though only a fraction of the current crosses the Ni-Si interface, the laser-induced creation of strong transient electrical fields at a ferromagnet-semiconductor interface allows for the injection of chargeless spin currents with record spin polarizations of 80%. Beyond that they are pulsed on the time scale of 100 fs which opens the door for new experiments and ultrafast spintronics.

  9. Integrable deformations of the XXZ spin chain

    NASA Astrophysics Data System (ADS)

    Beisert, Niklas; Fiévet, Lucas; de Leeuw, Marius; Loebbert, Florian

    2013-09-01

    We consider integrable deformations of the XXZ spin chain for periodic and open boundary conditions. In particular, we classify all long-range deformations and study their impact on the spectrum. As compared to the XXX case, we have the z-spin at our disposal, which induces two additional deformations: the short-range magnetic twist and a new long-range momentum-dependent twist.

  10. [GENE POLYMORPHISM Gln27Glu β2-ADRENERGIC RECEPTORS IN PATIENTS WITH ISCHEMIC HEART DISEASE AS A FACTOR OF DEVELOPMENT AND PROGRESSION OF OBESITY].

    PubMed

    Kadykova, O; Kravchun, P; Ryndina, N; Gabisoniya, T; Molotyagin, D

    2015-12-01

    Currently large numbers of genetic markers that are closely linked to the development of cardiovascular diseases and obesity are identified. The aim of our study was the study of polymorphism Gln27Glu β2-adrenergic receptor gene as a possible factor in the pathogenesis of obesity in patients with coronary heart disease. We conducted a comprehensive survey of 337 patients with coronary heart disease. All patients were divided into two groups according to the presence of obesity: the first group - patients with coronary artery disease with normal body weight (n=115), the second group - patients with coronary heart disease and obesity (n=222). The control group consisted of 35 healthy people. It was established that the presence of the G allele and genotype G/G Gln27Glu β2-adrenergic receptor gene are at risk of development and progression of obesity in patients with coronary heart disease.

  11. The arginine finger of RasGAP helps Gln-61 align the nucleophilic water in GAP-stimulated hydrolysis of GTP.

    PubMed

    Resat, H; Straatsma, T P; Dixon, D A; Miller, J H

    2001-05-22

    The Ras family of GTPases is a collection of molecular switches that link receptors on the plasma membrane to signaling pathways that regulate cell proliferation and differentiation. The accessory GTPase-activating proteins (GAPs) negatively regulate the cell signaling by increasing the slow intrinsic GTP to GDP hydrolysis rate of Ras. Mutants of Ras are found in 25-30% of human tumors. The most dramatic property of these mutants is their insensitivity to the negative regulatory action of GAPs. All known oncogenic mutants of Ras map to a small subset of amino acids. Gln-61 is particularly important because virtually all mutations of this residue eliminate sensitivity to GAPs. Despite its obvious importance for carcinogenesis, the role of Gln-61 in the GAP-stimulated GTPase activity of Ras has remained a mystery. Our molecular dynamics simulations of the p21ras-p120GAP-GTP complex suggest that the local structure around the catalytic region can be different from that revealed by the x-ray crystal structure. We find that the carbonyl oxygen on the backbone of the arginine finger supplied in trans by p120GAP (Arg-789) interacts with a water molecule in the active site that is forming a bridge between the NH(2) group of the Gln-61 and the gamma-phosphate of GTP. Thus, Arg-789 may play a dual role in generating the nucleophile as well as stabilizing the transition state for PO bond cleavage. PMID:11371635

  12. Roles of Residues Arg-61 and Gln-38 of Human DNA Polymerase η in Bypass of Deoxyguanosine and 7,8-Dihydro-8-oxo-2'-deoxyguanosine.

    PubMed

    Su, Yan; Patra, Amritraj; Harp, Joel M; Egli, Martin; Guengerich, F Peter

    2015-06-26

    Like the other Y-family DNA polymerases, human DNA polymerase η (hpol η) has relatively low fidelity and is able to tolerate damage during DNA synthesis, including 7,8-dihydro-8-oxo-2'-deoxyguanosine (8-oxoG), one of the most abundant DNA lesions in the genome. Crystal structures show that Arg-61 and Gln-38 are located near the active site and may play important roles in the fidelity and efficiency of hpol η. Site-directed mutagenesis was used to replace these side chains either alone or together, and the wild type or mutant proteins were purified and tested by replicating DNA past deoxyguanosine (G) or 8-oxoG. The catalytic activity of hpol η was dramatically disrupted by the R61M and Q38A/R61A mutations, as opposed to the R61A and Q38A single mutants. Crystal structures of hpol η mutant ternary complexes reveal that polarized water molecules can mimic and partially compensate for the missing side chains of Arg-61 and Gln-38 in the Q38A/R61A mutant. The combined data indicate that the positioning and positive charge of Arg-61 synergistically contribute to the nucleotidyl transfer reaction, with additional influence exerted by Gln-38. In addition, gel filtration chromatography separated multimeric and monomeric forms of wild type and mutant hpol η, indicating the possibility that hpol η forms multimers in vivo. PMID:25947374

  13. Spin Relaxation and Spin Transport in Graphene

    NASA Astrophysics Data System (ADS)

    Wu, M. W.

    2012-02-01

    In this talk we are going to present our theoretical investigations on spin dynamics of graphene under various conditions based on a fully microscopic kinetic-spin-Bloch-equation approach [1]. We manage to nail down the solo spin relaxation mechanism of graphene in measurements from two leading groups, one in US and one in the Netherland. Many novel effects of the electron-electron Coulomb interaction on spin relaxation in graphene are addressed. Our theory can have nice agreement with experimental data.[4pt] [1] M. W. Wu, J. H. Jiang, and M. Q. Weng, ``Spin dynamics in semiconductors,'' Phys. Rep. 493, 61 (2010).

  14. Spin Liquid Condensate of Spinful Bosons

    NASA Astrophysics Data System (ADS)

    Lian, Biao; Zhang, Shoucheng

    2015-03-01

    We introduce the concept of a bosonic spin liquid condensate (SLC), where spinful bosons in a lattice form a zero-temperature spin disordered charge condensate that preserves the spin rotation symmetry, but breaks the U(1) symmetry due to a spinless order parameter with charge one. It has an energy gap to all the spin excitations. We show that such SLC states can be realized in a system of spin S >= 2 bosons. In particular, we analyze the SLC phase diagram in the spin 2 case using a mean-field variational wave function method. We show there is a direct analogy between the SLC and the resonating-valence-bond (RVB) state. The existence of SLC reveals the possible existence of a more general new class of superfluid phases in a lattice.

  15. Spin-Liquid Condensate of Spinful Bosons

    NASA Astrophysics Data System (ADS)

    Lian, Biao; Zhang, Shoucheng

    2014-08-01

    We introduce the concept of a bosonic spin liquid condensate (SLC), where spinful bosons in a lattice form a zero-temperature spin disordered charge condensate that preserves the spin rotation symmetry, but breaks the U(1) symmetry due to a spinless order parameter with charge one. It has an energy gap to all the spin excitations. We show that such SLC states can be realized in a system of spin S ≥2 bosons. In particular, we analyze the SLC phase diagram in the spin 2 case using a mean-field variational wave function method. We show there is a direct analogy between the SLC and the resonating-valence-bond state.

  16. Ballistic spin resonance.

    PubMed

    Frolov, S M; Lüscher, S; Yu, W; Ren, Y; Folk, J A; Wegscheider, W

    2009-04-16

    The phenomenon of spin resonance has had far-reaching influence since its discovery 70 years ago. Electron spin resonance driven by high-frequency magnetic fields has enhanced our understanding of quantum mechanics, and finds application in fields as diverse as medicine and quantum information. Spin resonance can also be induced by high-frequency electric fields in materials with a spin-orbit interaction; the oscillation of the electrons creates a momentum-dependent effective magnetic field acting on the electron spin. Here we report electron spin resonance due to a spin-orbit interaction that does not require external driving fields. The effect, which we term ballistic spin resonance, is driven by the free motion of electrons that bounce at frequencies of tens of gigahertz in micrometre-scale channels of a two-dimensional electron gas. This is a frequency range that is experimentally challenging to access in spin resonance, and especially difficult on a chip. The resonance is manifest in electrical measurements of pure spin currents-we see a strong suppression of spin relaxation length when the oscillating spin-orbit field is in resonance with spin precession in a static magnetic field. These findings illustrate how the spin-orbit interaction can be harnessed for spin manipulation in a spintronic circuit, and point the way to gate-tunable coherent spin rotations in ballistic nanostructures without external alternating current fields. PMID:19370029

  17. Nitrogen starvation and TorC1 inhibition differentially affect nuclear localization of the Gln3 and Gat1 transcription factors through the rare glutamine tRNACUG in Saccharomyces cerevisiae.

    PubMed

    Tate, Jennifer J; Rai, Rajendra; Cooper, Terrance G

    2015-02-01

    A leucine, leucyl-tRNA synthetase-dependent pathway activates TorC1 kinase and its downstream stimulation of protein synthesis, a major nitrogen consumer. We previously demonstrated, however, that control of Gln3, a transcription activator of catabolic genes whose products generate the nitrogenous precursors for protein synthesis, is not subject to leucine-dependent TorC1 activation. This led us to conclude that excess nitrogen-dependent down-regulation of Gln3 occurs via a second mechanism that is independent of leucine-dependent TorC1 activation. A major site of Gln3 and Gat1 (another GATA-binding transcription activator) control occurs at their access to the nucleus. In excess nitrogen, Gln3 and Gat1 are sequestered in the cytoplasm in a Ure2-dependent manner. They become nuclear and activate transcription when nitrogen becomes limiting. Long-term nitrogen starvation and treatment of cells with the glutamine synthetase inhibitor methionine sulfoximine (Msx) also elicit nuclear Gln3 localization. The sensitivity of Gln3 localization to glutamine and inhibition of glutamine synthesis prompted us to investigate the effects of a glutamine tRNA mutation (sup70-65) on nitrogen-responsive control of Gln3 and Gat1. We found that nuclear Gln3 localization elicited by short- and long-term nitrogen starvation; growth in a poor, derepressive medium; Msx or rapamycin treatment; or ure2Δ mutation is abolished in a sup70-65 mutant. However, nuclear Gat1 localization, which also exhibits a glutamine tRNACUG requirement for its response to short-term nitrogen starvation or growth in proline medium or a ure2Δ mutation, does not require tRNACUG for its response to rapamycin. Also, in contrast with Gln3, Gat1 localization does not respond to long-term nitrogen starvation. These observations demonstrate the existence of a specific nitrogen-responsive component participating in the control of Gln3 and Gat1 localization and their downstream production of nitrogenous precursors. This

  18. RHIC SPIN FLIPPER

    SciTech Connect

    BAI,M.; ROSER, T.

    2007-06-25

    This paper proposes a new design of spin flipper for RHIC to obtain full spin flip with the spin tune staying at half integer. The traditional technique of using an rf dipole or solenoid as spin flipper to achieve full spin flip in the presence of full Siberian snake requires one to change the snake configuration to move the spin tune away from half integer. This is not practical for an operational high energy polarized proton collider like RHIC where beam lifetime is sensitive to small betatron tune change. The design of the new spin flipper as well as numerical simulations are presented.

  19. Association between Toll-like receptor 7 Gln11Leu single-nucleotide polymorphism and basal cell carcinoma

    PubMed Central

    RUSSO, IRENE; CONA, CAMILLA; SAPONERI, ANDREA; BASSETTO, FRANCO; BALDO, VINCENZO; ALAIBAC, MAURO

    2016-01-01

    Non-melanoma skin cancers (NMSC) are the most common form of human skin cancer. The majority of NMSC are basal cell carcinoma (BCC) and squamous cell carcinoma (SCC) with a BCC:SCC incidence ratio of 4:1 in immunocompetent patients. Toll-like receptors (TLRs) are transmembrane glycoproteins that recognize pathogen-associated molecular patterns and damage-associated molecular patterns, against which they activate the innate immune response and initiate the adaptive immune response. Genetic variations of these receptors can alter the immune system and are involved in evolution and susceptibility of various diseases, including cancer. Imiquimod, an agonist of TLR7, is applied topically in the treatment of premalignant and malignant skin disorders, in particular BCC. The high efficacy of this TLR7 agonist toward BCC supports a possible role of this receptor in the induction of BCC and, consequently, polymorphisms of this receptor could be responsible for a greater or lesser susceptibility to BCC. The aim of the present study was to evaluate whether the presence of the functional TLR7 rs179008/Gln11Leu promoter polymorphism conferred an increased susceptibility to BCC. A case-control study with 177 BCC cases and 158 controls was performed to highlight the possible association between this polymorphism and the susceptibility to BCC. As the TLR7 gene is localized on chromosome X, the allelic frequency of this polymorphism was analyzed separately in males and females. The analysis of the distribution of frequencies of wild-type TLR7 and variant TLR7 carrying the single-nucleotide polymorphism (SNP) rs179008 in patients with BCC and healthy subjects did not reveal any statistically significant difference between cases and controls. This study does not suggest the involvement of the SNP rs179008 of TLR7 in the susceptibility to BCC, but cannot exclude a role for TLR7 in BCC carcinogenesis considering the high efficacy of the TLR7 agonist, imiquimod, in the treatment of this

  20. Magnons, Spin Current and Spin Seebeck Effect

    NASA Astrophysics Data System (ADS)

    Maekawa, Sadamichi

    2012-02-01

    When metals and semiconductors are placed in a temperature gradient, the electric voltage is generated. This mechanism to convert heat into electricity, the so-called Seebeck effect, has attracted much attention recently as the mechanism for utilizing wasted heat energy. [1]. Ferromagnetic insulators are good conductors of spin current, i.e., the flow of electron spins [2]. When they are placed in a temperature gradient, generated are magnons, spin current and the spin voltage [3], i.e., spin accumulation. Once the spin voltage is converted into the electric voltage by inverse spin Hall effect in attached metal films such as Pt, the electric voltage is obtained from heat energy [4-5]. This is called the spin Seebeck effect. Here, we present the linear-response theory of spin Seebeck effect based on the fluctuation-dissipation theorem [6-8] and discuss a variety of the devices. [4pt] [1] S. Maekawa et al, Physics of Transition Metal Oxides (Springer, 2004). [0pt] [2] S. Maekawa: Nature Materials 8, 777 (2009). [0pt] [3] Concept in Spin Electronics, eds. S. Maekawa (Oxford University Press, 2006). [0pt] [4] K. Uchida et al., Nature 455, 778 (2008). [0pt] [5] K. Uchida et al., Nature Materials 9, 894 (2010) [0pt] [6] H. Adachi et al., APL 97, 252506 (2010) and Phys. Rev. B 83, 094410 (2011). [0pt] [7] J. Ohe et al., Phys. Rev. B (2011) [0pt] [8] K. Uchida et al., Appl. Phys. Lett. 97, 104419 (2010).

  1. Interacting spin-orbit-coupled spin-1 Bose-Einstein condensates

    NASA Astrophysics Data System (ADS)

    Sun, Kuei; Qu, Chunlei; Xu, Yong; Zhang, Yongping; Zhang, Chuanwei

    2016-02-01

    The recent experimental realization of spin-orbit (SO) coupling for spin-1 ultracold atoms opens an interesting avenue for exploring SO-coupling-related physics in large-spin systems, which is generally unattainable in electronic materials. In this paper, we study the effects of interactions between atoms on the ground states and collective excitations of SO-coupled spin-1 Bose-Einstein condensates (BECs) in the presence of a spin-tensor potential. We find that ferromagnetic interaction between atoms can induce a stripe phase exhibiting in-phase or out-of-phase modulating patterns between spin-tensor and zero-spin-component density waves. We characterize the phase transitions between different phases using the spin-tensor density as well as the collective dipole motion of the BEC. We show that there exists a double maxon-roton structure in the Bogoliubov-excitation spectrum, attributed to the three band minima of the SO-coupled spin-1 BEC.

  2. Spin dynamics simulation of electron spin relaxation in Ni{sup 2+}(aq)

    SciTech Connect

    Rantaharju, Jyrki Mareš, Jiří Vaara, Juha

    2014-07-07

    The ability to quantitatively predict and analyze the rate of electron spin relaxation of open-shell systems is important for electron paramagnetic resonance and paramagnetic nuclear magnetic resonance spectroscopies. We present a combined molecular dynamics (MD), quantum chemistry (QC), and spin dynamics simulation method for calculating such spin relaxation rates. The method is based on the sampling of a MD trajectory by QC calculations, to produce instantaneous parameters of the spin Hamiltonian used, in turn, to numerically solve the Liouville-von Neumann equation for the time evolution of the spin density matrix. We demonstrate the approach by simulating the relaxation of electron spin in an aqueous solution of Ni{sup 2+} ion. The spin-lattice (T{sub 1}) and spin-spin (T{sub 2}) relaxation rates are extracted directly from the simulations of the time dependence of the longitudinal and transverse magnetization, respectively. Good agreement with the available, indirectly obtained experimental data is obtained by our method.

  3. Spin-filtering at COSY

    NASA Astrophysics Data System (ADS)

    Weidemann, Christian; PAX Collaboration

    2011-05-01

    The Spin Filtering experiments at COSY and AD at CERN within the framework of the Polarized Antiproton EXperiments (PAX) are proposed to determine the spin-dependent cross sections in bar pp scattering by observation of the buildup of polarization of an initially unpolarized stored antiproton beam after multiple passage through an internal polarized gas target. In order to commission the experimental setup for the AD and to understand the relevant machine parameters spin-filtering will first be done with protons at COSY. A first major step toward this goal has been achieved with the installation of the required mini-β section in summer 2009 and it's commissioning in January 2010. The target chamber together with the atomic beam source and the so-called Breit-Rabi polarimeter have been installed and commissioned in summer 2010. In addition an openable storage cell has been used. It provides a target thickness of 5·1013 atoms/cm2. We report on the status of spin-filtering experiments at COSY and the outcome of a recent beam time including studies on beam lifetime limitations like intra-beam scattering and the electron-cooling performance as well as machine acceptance studies.

  4. Hierarchical spin-orbital polarization of a giant Rashba system.

    PubMed

    Bawden, Lewis; Riley, Jonathan M; Kim, Choong H; Sankar, Raman; Monkman, Eric J; Shai, Daniel E; Wei, Haofei I; Lochocki, Edward B; Wells, Justin W; Meevasana, Worawat; Kim, Timur K; Hoesch, Moritz; Ohtsubo, Yoshiyuki; Le Fèvre, Patrick; Fennie, Craig J; Shen, Kyle M; Chou, Fangcheng; King, Phil D C

    2015-09-01

    The Rashba effect is one of the most striking manifestations of spin-orbit coupling in solids and provides a cornerstone for the burgeoning field of semiconductor spintronics. It is typically assumed to manifest as a momentum-dependent splitting of a single initially spin-degenerate band into two branches with opposite spin polarization. Combining polarization-dependent and resonant angle-resolved photoemission measurements with density functional theory calculations, we show that the two "spin-split" branches of the model giant Rashba system BiTeI additionally develop disparate orbital textures, each of which is coupled to a distinct spin configuration. This necessitates a reinterpretation of spin splitting in Rashba-like systems and opens new possibilities for controlling spin polarization through the orbital sector. PMID:26601268

  5. Hierarchical spin-orbital polarization of a giant Rashba system

    PubMed Central

    Bawden, Lewis; Riley, Jonathan M.; Kim, Choong H.; Sankar, Raman; Monkman, Eric J.; Shai, Daniel E.; Wei, Haofei I.; Lochocki, Edward B.; Wells, Justin W.; Meevasana, Worawat; Kim, Timur K.; Hoesch, Moritz; Ohtsubo, Yoshiyuki; Le Fèvre, Patrick; Fennie, Craig J.; Shen, Kyle M.; Chou, Fangcheng; King, Phil D. C.

    2015-01-01

    The Rashba effect is one of the most striking manifestations of spin-orbit coupling in solids and provides a cornerstone for the burgeoning field of semiconductor spintronics. It is typically assumed to manifest as a momentum-dependent splitting of a single initially spin-degenerate band into two branches with opposite spin polarization. Combining polarization-dependent and resonant angle-resolved photoemission measurements with density functional theory calculations, we show that the two “spin-split” branches of the model giant Rashba system BiTeI additionally develop disparate orbital textures, each of which is coupled to a distinct spin configuration. This necessitates a reinterpretation of spin splitting in Rashba-like systems and opens new possibilities for controlling spin polarization through the orbital sector. PMID:26601268

  6. Spin Hall effect devices.

    PubMed

    Jungwirth, Tomas; Wunderlich, Jörg; Olejník, Kamil

    2012-05-01

    The spin Hall effect is a relativistic spin-orbit coupling phenomenon that can be used to electrically generate or detect spin currents in non-magnetic systems. Here we review the experimental results that, since the first experimental observation of the spin Hall effect less than 10 years ago, have established the basic physical understanding of the phenomenon, and the role that several of the spin Hall devices have had in the demonstration of spintronic functionalities and physical phenomena. We have attempted to organize the experiments in a chronological order, while simultaneously dividing the Review into sections on semiconductor or metal spin Hall devices, and on optical or electrical spin Hall experiments. The spin Hall device studies are placed in a broader context of the field of spin injection, manipulation, and detection in non-magnetic conductors.

  7. Spin Rotation of Formalism for Spin Tracking

    SciTech Connect

    Luccio,A.

    2008-02-01

    The problem of which coefficients are adequate to correctly represent the spin rotation in vector spin tracking for polarized proton and deuteron beams in synchrotrons is here re-examined in the light of recent discussions. The main aim of this note is to show where some previous erroneous results originated and how to code spin rotation in a tracking code. Some analysis of a recent experiment is presented that confirm the correctness of the assumptions.

  8. The Master T-Operator for Inhomogeneous XXX Spin Chain and mKP Hierarchy

    NASA Astrophysics Data System (ADS)

    Zabrodin, Anton

    2014-01-01

    Following the approach of [Alexandrov A., Kazakov V., Leurent S., Tsuboi Z., Zabrodin A., J. High Energy Phys. 2013 (2013), no. 9, 064, 65 pages, arXiv:1112.3310], we show how to construct the master T-operator for the quantum inhomogeneous GL(N) XXX spin chain with twisted boundary conditions. It satisfies the bilinear identity and Hirota equations for the classical mKP hierarchy. We also characterize the class of solutions to the mKP hierarchy that correspond to eigenvalues of the master T-operator and study dynamics of their zeros as functions of the spectral parameter. This implies a remarkable connection between the quantum spin chain and the classical Ruijsenaars-Schneider system of particles.

  9. Effects of symmetry and spin configuration on spin-dependent transport properties of iron-phthalocyanine-based devices

    SciTech Connect

    Cui, Li-Ling; Yang, Bing-Chu Li, Xin-Mei; Cao, Can; Long, Meng-Qiu

    2014-07-21

    Spin-dependent transport properties of nanodevices constructed by iron-phthalocyanine (FePc) molecule sandwiched between two zigzag graphene nanoribbon electrodes are studied using first-principles quantum transport calculations. The effects of the symmetry and spin configuration of electrodes have been taken into account. It is found that large magnetoresistance, large spin polarization, dual spin-filtering, and negative differential resistance (NDR) can coexist in these devices. Our results show that 5Z-FePc system presents well conductive ability in both parallel (P) and anti-parallel (AP) configurations. For 6Z-FePc-P system, spin filtering effect and large spin polarization can be found. A dual spin filtering and NDR can also be shown in 6Z-FePc-AP. Our studies indicate that the dual spin filtering effect depends on the orbitals symmetry of the energy bands and spin mismatching of the electrodes. And all the effects would open up possibilities for their applications in spin-valve, spin-filter as well as effective spin diode devices.

  10. Effects of symmetry and spin configuration on spin-dependent transport properties of iron-phthalocyanine-based devices

    NASA Astrophysics Data System (ADS)

    Cui, Li-Ling; Yang, Bing-Chu; Li, Xin-Mei; Cao, Can; Long, Meng-Qiu

    2014-07-01

    Spin-dependent transport properties of nanodevices constructed by iron-phthalocyanine (FePc) molecule sandwiched between two zigzag graphene nanoribbon electrodes are studied using first-principles quantum transport calculations. The effects of the symmetry and spin configuration of electrodes have been taken into account. It is found that large magnetoresistance, large spin polarization, dual spin-filtering, and negative differential resistance (NDR) can coexist in these devices. Our results show that 5Z-FePc system presents well conductive ability in both parallel (P) and anti-parallel (AP) configurations. For 6Z-FePc-P system, spin filtering effect and large spin polarization can be found. A dual spin filtering and NDR can also be shown in 6Z-FePc-AP. Our studies indicate that the dual spin filtering effect depends on the orbitals symmetry of the energy bands and spin mismatching of the electrodes. And all the effects would open up possibilities for their applications in spin-valve, spin-filter as well as effective spin diode devices.

  11. Snell's Law for Spin Waves.

    PubMed

    Stigloher, J; Decker, M; Körner, H S; Tanabe, K; Moriyama, T; Taniguchi, T; Hata, H; Madami, M; Gubbiotti, G; Kobayashi, K; Ono, T; Back, C H

    2016-07-15

    We report the experimental observation of Snell's law for magnetostatic spin waves in thin ferromagnetic Permalloy films by imaging incident, refracted, and reflected waves. We use a thickness step as the interface between two media with different dispersion relations. Since the dispersion relation for magnetostatic waves in thin ferromagnetic films is anisotropic, deviations from the isotropic Snell's law known in optics are observed for incidence angles larger than 25° with respect to the interface normal between the two magnetic media. Furthermore, we can show that the thickness step modifies the wavelength and the amplitude of the incident waves. Our findings open up a new way of spin wave steering for magnonic applications. PMID:27472134

  12. Antiferromagnetic Spin Wave Field-Effect Transistor

    DOE PAGESBeta

    Cheng, Ran; Daniels, Matthew W.; Zhu, Jian-Gang; Xiao, Di

    2016-04-06

    In a collinear antiferromagnet with easy-axis anisotropy, symmetry dictates that the spin wave modes must be doubly degenerate. Theses two modes, distinguished by their opposite polarization and available only in antiferromagnets, give rise to a novel degree of freedom to encode and process information. We show that the spin wave polarization can be manipulated by an electric field induced Dzyaloshinskii-Moriya interaction and magnetic anisotropy. We propose a prototype spin wave field effect transistor which realizes a gate-tunable magnonic analog of the Faraday effect, and demonstrate its application in THz signal modulation. In conclusion, our findings open up the exciting possibilitymore » of digital data processing utilizing antiferromagnetic spin waves and enable the direct projection of optical computing concepts onto the mesoscopic scale.« less

  13. Integral dependent spin couplings in CI calculations

    NASA Technical Reports Server (NTRS)

    Iberle, K.; Davidson, E. R.

    1982-01-01

    Although the number of ways to combine Slater determinants to form spin eigenfunctions increases rapidly with the number of open shells, most of these spin couplings will make only a small contribution to a given state, provided the spin coupling is chosen judiciously. The technique of limiting calculations to the interacting subspace pioneered by Bunge (1970) was employed by Munch and Davidson (1975) to the vanadium atom. The use of an interacting space looses its advantage in more complex cases. However, the problem can always be reduced to only one interacting spin coupling by making the coefficients integral dependent. The present investigation is concerned with the performance of integral dependent interacting couplings, taking into account the results of three test calculations.

  14. Spin transistor action from hidden Onsager reciprocity.

    PubMed

    Adagideli, İ; Lutsker, V; Scheid, M; Jacquod, Ph; Richter, K

    2012-06-01

    We investigate generic Hamiltonians for confined electrons with weak inhomogeneous spin-orbit coupling. Using a local gauge transformation we show how the SU(2) Hamiltonian structure reduces to a U(1)×U(1) structure for spinless fermions in a fictitious orbital magnetic field, to leading order in the spin-orbit strength. Using an Onsager relation, we further show how the resulting spin conductance vanishes in a two-terminal setup, and how it is turned on by either weakly breaking time-reversal symmetry or opening additional transport terminals, thus allowing one to switch the generated spin current on or off. We numerically check our theory for mesoscopic cavities as well as Aharonov-Bohm rings.

  15. Antiferromagnetic Spin Wave Field-Effect Transistor

    NASA Astrophysics Data System (ADS)

    Cheng, Ran; Daniels, Matthew W.; Zhu, Jian-Gang; Xiao, Di

    2016-04-01

    In a collinear antiferromagnet with easy-axis anisotropy, symmetry dictates that the spin wave modes must be doubly degenerate. Theses two modes, distinguished by their opposite polarization and available only in antiferromagnets, give rise to a novel degree of freedom to encode and process information. We show that the spin wave polarization can be manipulated by an electric field induced Dzyaloshinskii-Moriya interaction and magnetic anisotropy. We propose a prototype spin wave field-effect transistor which realizes a gate-tunable magnonic analog of the Faraday effect, and demonstrate its application in THz signal modulation. Our findings open up the exciting possibility of digital data processing utilizing antiferromagnetic spin waves and enable the direct projection of optical computing concepts onto the mesoscopic scale.

  16. Antiferromagnetic Spin Wave Field-Effect Transistor

    PubMed Central

    Cheng, Ran; Daniels, Matthew W.; Zhu, Jian-Gang; Xiao, Di

    2016-01-01

    In a collinear antiferromagnet with easy-axis anisotropy, symmetry dictates that the spin wave modes must be doubly degenerate. Theses two modes, distinguished by their opposite polarization and available only in antiferromagnets, give rise to a novel degree of freedom to encode and process information. We show that the spin wave polarization can be manipulated by an electric field induced Dzyaloshinskii-Moriya interaction and magnetic anisotropy. We propose a prototype spin wave field-effect transistor which realizes a gate-tunable magnonic analog of the Faraday effect, and demonstrate its application in THz signal modulation. Our findings open up the exciting possibility of digital data processing utilizing antiferromagnetic spin waves and enable the direct projection of optical computing concepts onto the mesoscopic scale. PMID:27048928

  17. Role of β/δ101Gln in regulating the effect of temperature and allosteric effectors on oxygen affinity in woolly mammoth hemoglobin.

    PubMed

    Yuan, Yue; Byrd, Catherine; Shen, Tong-Jian; Simplaceanu, Virgil; Tam, Tsuey Chyi S; Ho, Chien

    2013-12-10

    The oxygen affinity of woolly mammoth hemoglobin (rHb WM) is less affected by temperature change than that of Asian elephant hemoglobin (rHb AE) or human normal adult hemoglobin (Hb A). We report here a biochemical-biophysical study of Hb A, rHb AE, rHb WM, and three rHb WM mutants with amino acid substitutions at β/δ101 (β/δ101Gln→Glu, Lys, or Asp) plus a double and a triple mutant, designed to clarify the role of the β/δ101 residue. The β/δ101Gln residue is important for responding to allosteric effectors, such as phosphate, inositol hexaphosphate (IHP), and chloride. The rHb WM mutants studied generally have higher affinity for oxygen under various conditions of pH, temperature, and salt concentration, and in the presence or absence of organic phosphate, than do rHb WM, rHb AE, and Hb A. Titrations for the O2 affinity of these mutant rHbs as a function of chloride concentration indicate a lower heterotopic effect of this anion due to the replacement of β/δ101Gln in rHb WM. The alkaline Bohr effect of rHb WM and its mutants is reduced by 20-50% compared to that of Hb A and is independent of changes in temperature, in contrast to what has been observed in the hemoglobins of most mammalian species, including human. The results of our study on the temperature dependence of the O2 affinity of rHb WM and its mutant rHbs illustrate the important role of β/δ101Gln in regulating the functional properties of these hemoglobins.

  18. Role of β/δ101Gln in regulating the effect of temperature and allosteric effectors on oxygen affinity in woolly mammoth hemoglobin.

    PubMed

    Yuan, Yue; Byrd, Catherine; Shen, Tong-Jian; Simplaceanu, Virgil; Tam, Tsuey Chyi S; Ho, Chien

    2013-12-10

    The oxygen affinity of woolly mammoth hemoglobin (rHb WM) is less affected by temperature change than that of Asian elephant hemoglobin (rHb AE) or human normal adult hemoglobin (Hb A). We report here a biochemical-biophysical study of Hb A, rHb AE, rHb WM, and three rHb WM mutants with amino acid substitutions at β/δ101 (β/δ101Gln→Glu, Lys, or Asp) plus a double and a triple mutant, designed to clarify the role of the β/δ101 residue. The β/δ101Gln residue is important for responding to allosteric effectors, such as phosphate, inositol hexaphosphate (IHP), and chloride. The rHb WM mutants studied generally have higher affinity for oxygen under various conditions of pH, temperature, and salt concentration, and in the presence or absence of organic phosphate, than do rHb WM, rHb AE, and Hb A. Titrations for the O2 affinity of these mutant rHbs as a function of chloride concentration indicate a lower heterotopic effect of this anion due to the replacement of β/δ101Gln in rHb WM. The alkaline Bohr effect of rHb WM and its mutants is reduced by 20-50% compared to that of Hb A and is independent of changes in temperature, in contrast to what has been observed in the hemoglobins of most mammalian species, including human. The results of our study on the temperature dependence of the O2 affinity of rHb WM and its mutant rHbs illustrate the important role of β/δ101Gln in regulating the functional properties of these hemoglobins. PMID:24228693

  19. Role of β/δ101Gln in Regulating the Effect of Temperature and Allosteric Effectors on Oxygen Affinity in Woolly Mammoth Hemoglobin†

    PubMed Central

    Yuan, Yue; Byrd, Catherine; Shen, Tong-Jian; Simplaceanu, Virgil; Tam, Tsuey Chyi S.; Ho, Chien

    2013-01-01

    The oxygen affinity of woolly mammoth hemoglobin (rHb WM) is less affected by temperature change than that of Asian elephant hemoglobin (rHb AE) or human adult hemoglobin (Hb A). We report here a biochemical-biophysical study of Hb A, rHb AE, rHb WM and three rHb WM mutants with amino acid substitutions at β/δ101 (β/δ101Gln→Glu, Lys, or Asp) plus a double and a triple mutant, designed to clarify the role of the β/δ101 residue. The β/δ101Gln residue is important for responding to allosteric effectors, such as phosphate, inositol hexaphosphate (IHP), and chloride. The rHb WM mutants studied generally have higher affinity for oxygen under various conditions of pH, temperature, and salt concentration, and in the presence or absence of organic phosphate, than do rHb WM, rHb AE and Hb A. Titrations for the O2 affinity of these mutant rHbs as a function of chloride concentration indicate a lower heterotopic effect of this anion due to the replacement of β/δ101Gln in rHb WM. The alkaline Bohr effect of rHb WM and its mutants is reduced by 20–50% compared to that of Hb A and is independent of changes in temperature, in contrast to what has been observed in the hemoglobins of most mammalian species, including human. The results of our study on the temperature dependence of the O2 affinity of rHb WM and its mutant rHbs illustrate the important role of β/δ101Gln in regulating the functional properties of these hemoglobins. PMID:24228693

  20. Axial ligand modulation of the electronic structures of binuclear copper sites: analysis of paramagnetic 1H NMR spectra of Met160Gln Cu(A).

    PubMed

    Fernández, C O; Cricco, J A; Slutter, C E; Richards, J H; Gray, H B; Vila, A J

    2001-11-28

    Cu(A) is an electron-transfer copper center present in heme-copper oxidases and N2O reductases. The center is a binuclear unit, with two cysteine ligands bridging the metal ions and two terminal histidine residues. A Met residue and a peptide carbonyl group are located on opposite sides of the Cu2S2 plane; these weaker ligands are fully conserved in all known Cu(A) sites. The Met160Gln mutant of the soluble subunit II of Thermus thermophilus ba3 oxidase has been studied by NMR spectroscopy. In its oxidized form, the binuclear copper is a fully delocalized mixed-valence pair, as are all natural Cu(A) centers. The faster nuclear relaxation in this mutant suggests that a low-lying excited state has shifted to higher energies compared to that of the wild-type protein. The introduction of the Gln residue alters the coordination mode of His114 but does not affect His157, thereby confirming the proposal that the axial ligand-to-copper distances influence the copper-His interactions (Robinson, H.; Ang, M. C.; Gao, Y. G.; Hay, M. T.; Lu, Y.; Wang, A. H. Biochemistry 1999, 38, 5677). Changes in the hyperfine coupling constants of the Cys beta-CH2 groups are attributed to minor geometrical changes that affect the Cu-S-C(beta)-H(beta) dihedral angles. These changes, in addition, shift the thermally accessible excited states, thus influencing the spectral position of the Cys beta-CH2 resonances. The Cu-Cys bonds are not substantially altered by the Cu-Gln160 interaction, in contrast to the situation found in the evolutionarily related blue copper proteins. It is possible that regulatory subunits in the mitochondrial oxidases fix the relative positions of thermally accessible Cu(A) excited states by tuning axial ligand interactions.

  1. Spin Transport by Collective Spin Excitations

    NASA Astrophysics Data System (ADS)

    Hammel, P. Chris

    We report studies of angular momentum transport in insulating materials. Our measurements reveal efficient spin pumping from high wavevector k spin waves in thin film Y3Fe5O12 (YIG): spin pumping is independent of wavevector up to k ~ 20 μm-1. Optical detection of YIG FMR by NV centers in diamond reveals a role for spin waves in this insulator-to-insulator spin transfer process. Spin transport is typically suppressed by insulating barriers, but we find that fluctuating antiferromagnetic correlations enable efficient spin transport at nm-scale thicknesses in insulating antiferromagnets, even in the absence of long-range order, and that the spin decay length increases with the strength of the antiferromagnetic correlations. This research is supported by the U.S. DOE through Grants DE-FG02-03ER46054 and DE-SC0001304, by the NSF MRSEC program through Grant No. 1420451 and by the Army Research Office through Grant W911NF0910147.

  2. The effect of nitrate addition on abundance of nirK, nirS and gln genes in acidified Norway spruce forest soil

    NASA Astrophysics Data System (ADS)

    Bárta, Jiří; Tahovská, Karolina; Kaåa, Jiří; Antrå¯Čková, Hana Å.

    2010-05-01

    The denitrification is the main biotic process leading to loses of fixed nitrogen as well as removal of excess of nitrate (NO3-) from the soil environment. The reduction of NO2- to nitric oxide (NO) distinguishes the 'true' denitrifiers from other nitrate-respiring bacteria. This reaction is catalyzed by two different types of nitrite reductases, either a cytochrome cd1 encoded by nirS gene (nirS denitrifiers) or a Cu-containing enzyme encoded by nirK gene (nirK denitrifiers). The nirS denitrifiers are located mostly in rhizosphere, while the nirK denitrifiers are more abundant in bulk soil. These two groups can be also classified as markers of denitrification. Glutamine synthetase is one of the main bacterial NH4+ assimilating enzymes; it is coded by glnI gene. Glutamine synthetase is mostly active when N is the limiting factor for bacterial growth. There is recent evidence that the activity may be affected by the presence of alternative N source (i.e. NO3-). However, in anaerobic condition NO3- can be used also by the denitrifying bacteria so there may be strong competition for this nutrient. The laboratory experiment was performed to evaluate the effect of nitrates (NO3-) on abundance of nirK, nirS and gln gene copy numbers. The amount of NO3- corresponded to the actual atmospheric depositions on experimental sites in the Bohemian Forest. Litter organic layer (0-5cm of soil) was used for laboratory incubation experiment. Four replicates of control (no addition of NO3-), and NO3-addition were incubated anaerobically for one month. After the incubation DNA was extracted and the number of nirK, nirS and gln gene copies was determined using qPCR (SYBRGreen methodology). Results showed that the addition of NO3- significantly increased the number of nirK and nirS denitrifiers from 5.9x106 to 1.1x107 and from not detectable amount to 1.4x106, respectively. The gln gene copy number was also higher after NO3-addition. However, the difference was not statistically

  3. Spin structure functions

    SciTech Connect

    Jian-ping Chen, Alexandre Deur, Sebastian Kuhn, Zein-eddine Meziani

    2011-06-01

    Spin-dependent observables have been a powerful tool to probe the internal structure of the nucleon and to understand the dynamics of the strong interaction. Experiments involving spin degrees of freedom have often brought out surprises and puzzles. The so-called "spin crisis" in the 1980s revealed the limitation of naive quark-parton models and led to intensive worldwide efforts, both experimental and theoretical, to understand the nucleon spin structure. With high intensity and high polarization of both the electron beam and targets, Jefferson Lab has the world's highest polarized luminosity and the best figure-of-merit for precision spin structure measurements. It has made a strong impact in this subfield of research. This chapter will highlight Jefferson Lab's unique contributions in the measurements of valence quark spin distributions, in the moments of spin structure functions at low to intermediate Q2, and in the transverse spin structure.

  4. Spinning Eggs and Ballerinas

    ERIC Educational Resources Information Center

    Cross, Rod

    2013-01-01

    Measurements are presented on the rise of a spinning egg. It was found that the spin, the angular momentum and the kinetic energy all decrease as the egg rises, unlike the case of a ballerina who can increase her spin and kinetic energy by reducing her moment of inertia. The observed effects can be explained, in part, in terms of rolling friction…

  5. Inelastic electron tunneling spectroscopy of a single nuclear spin.

    PubMed

    Delgado, F; Fernández-Rossier, J

    2011-08-12

    Detection of a single nuclear spin constitutes an outstanding problem in different fields of physics such as quantum computing or magnetic imaging. Here we show that the energy levels of a single nuclear spin can be measured by means of inelastic electron tunneling spectroscopy (IETS). We consider two different systems, a magnetic adatom probed with scanning tunneling microscopy and a single Bi dopant in a silicon nanotransistor. We find that the hyperfine coupling opens new transport channels which can be resolved at experimentally accessible temperatures. Our simulations evince that IETS yields information about the occupations of the nuclear spin states, paving the way towards transport-detected single nuclear spin resonance.

  6. The spin-partitioned total position-spread tensor: An application to Heisenberg spin chains

    SciTech Connect

    Fertitta, Edoardo; Paulus, Beate; El Khatib, Muammar; Evangelisti, Stefano; Leininger, Thierry

    2015-12-28

    The spin partition of the Total Position-Spread (TPS) tensor has been performed for one-dimensional Heisenberg chains with open boundary conditions. Both the cases of a ferromagnetic (high-spin) and an anti-ferromagnetic (low-spin) ground-state have been considered. In the case of a low-spin ground-state, the use of alternating magnetic couplings allowed to investigate the effect of spin-pairing. The behavior of the spin-partitioned TPS (SP-TPS) tensor as a function of the number of sites turned to be closely related to the presence of an energy gap between the ground-state and the first excited-state at the thermodynamic limit. Indeed, a gapped energy spectrum is associated to a linear growth of the SP-TPS tensor with the number of sites. On the other hand, in gapless situations, the spread presents a faster-than-linear growth, resulting in the divergence of its per-site value. Finally, for the case of a high-spin wave function, an analytical expression of the dependence of the SP-TPS on the number of sites n and the total spin-projection S{sub z} has been derived.

  7. Spin transport measurements in gallium arsenide quantum dots

    NASA Astrophysics Data System (ADS)

    Folk, Joshua Alexander

    This thesis presents a series of measurements investigating the spin physics of lateral quantum dots, defined electrostatically in the 2-D electron gas at the interface of a GaAs/AlGaAs heterostructure. The experiments span a range from open dots, where the leads of the dot carry at least one fully transmitting mode, to closed dots, where the leads are set to be tunnel barriers. For open dots, spin physics is inferred from measurements of conductance fluctuations; the effects of spin degeneracy in the orbital levels as well as a spin-orbit interaction are observed. In the closed dot measurements, ground state spin transitions as electrons are added to the dot may be determined from the motion of Coulomb blockade peaks in an in-plane magnetic field. In addition, this thesis demonstrates for the first time a direct measurement of the spin polarization of current emitted from a quantum dot, or a quantum point contact, during transport. These experiments make use of a spin-sensitive focusing geometry in which a quantum point contact serves as a spin analyzer for the mesoscopic device under test. Measurements are presented both in the open dot regime, where good agreement with theory is found, as well as the closed dot regime, where the data defies a simple theoretical explanation.

  8. The Transcriptional Repressor, MtrR, of the mtrCDE Efflux Pump Operon of Neisseria gonorrhoeae Can Also Serve as an Activator of "off Target" Gene (glnE) Expression.

    PubMed

    Johnson, Paul J T; Shafer, William M

    2015-06-01

    MtrR is a well-characterized repressor of the Neisseria gonorrhoeae mtrCDE efflux pump operon. However, results from a previous transcriptional profiling study suggested that MtrR also represses or activates expression of at least sixty genes outside of the mtr locus. Evidence that MtrR can directly repress so-called "off target" genes has previously been reported; in particular, MtrR was shown to directly repress glnA, which encodes glutamine synthetase. In contrast, evidence for the ability of MtrR to directly activate expression of gonococcal genes has been lacking; herein, we provide such evidence. We now report that MtrR has the ability to directly activate expression of glnE, which encodes the dual functional adenyltransferase/deadenylase enzyme GlnE that modifies GlnA resulting in regulation of its role in glutamine biosynthesis. With its capacity to repress expression of glnA, the results presented herein emphasize the diverse and often opposing regulatory properties of MtrR that likely contributes to the overall physiology and metabolism of N. gonorrhoeae. PMID:26078871

  9. The Steady Spin

    NASA Technical Reports Server (NTRS)

    Fuchs, Richard; Schmidt, Wilhelm

    1931-01-01

    With the object of further clarifying the problem of spinning, the equilibrium of the forces and moments acting on an airplane is discussed in light of the most recent test data. Convinced that in a spin the flight attitude by only small angles of yaw is more or less completely steady, the study is primarily devoted to an investigation of steady spin with no side slip. At small angles, wholly arbitrary and perfectly steady spins may be forced, depending on the type of control displacements. But at large angles only very steep and only "approaching steady" spins are possible, no matter what the control displacements.

  10. Macroscopic rotation of photon polarization induced by a single spin.

    PubMed

    Arnold, Christophe; Demory, Justin; Loo, Vivien; Lemaître, Aristide; Sagnes, Isabelle; Glazov, Mikhaïl; Krebs, Olivier; Voisin, Paul; Senellart, Pascale; Lanco, Loïc

    2015-01-01

    Entangling a single spin to the polarization of a single incoming photon, generated by an external source, would open new paradigms in quantum optics such as delayed-photon entanglement, deterministic logic gates or fault-tolerant quantum computing. These perspectives rely on the possibility that a single spin induces a macroscopic rotation of a photon polarization. Such polarization rotations induced by single spins were recently observed, yet limited to a few 10(-3) degrees due to poor spin-photon coupling. Here we report the enhancement by three orders of magnitude of the spin-photon interaction, using a cavity quantum electrodynamics device. A single hole spin in a semiconductor quantum dot is deterministically coupled to a micropillar cavity. The cavity-enhanced coupling between the incoming photons and the solid-state spin results in a polarization rotation by ± 6° when the spin is optically initialized in the up or down state. These results open the way towards a spin-based quantum network. PMID:25687134

  11. P2RX7 polymorphisms Gln460Arg and His155Tyr are not associated with major depressive disorder or remission after SSRI or ECT.

    PubMed

    Viikki, Merja; Kampman, Olli; Anttila, Sami; Illi, Ari; Setälä-Soikkeli, Eija; Huuhka, Martti; Mononen, Nina; Lehtimäki, Terho; Leinonen, Esa

    2011-04-15

    Purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7) gene polymorphism, has been suggested to be associated with major depressive disorder (MDD). The association between P2RX7 gene polymorphism and remission after serotonin selective reuptake inhibitors (SSRI) or electroconvulsive therapy (ECT) has not previously been studied. The aims of the present study were to test for an association between P2RX7 polymorphisms Gln460Arg (rs2230912) and His155Tyr (rs208294) and MDD in two patient populations compared to controls. The first patient sample consisted of 119 subjects with treatment-resistant major depressive disorder, who were treated with ECT and the second of 99 depressive outpatients treated with SSRI. Genotype frequencies were also compared between remitters (Montgomery and Åsberg Depression Rating Scale (MADRS)<8) and non-remitters (defined as MADRS≥8) to SSRI or ECT treatment. There were no differences in allele or genotype frequencies of either rs2230912 or rs208294 between patient groups and controls. Neither rs2230912 nor rs208294 was associated with MDD or remission after SSRI or ECT. The results suggest that P2RX7 gene polymorphisms Gln460Arg (rs2230912) and His155Tyr (rs208294) are not associated with MDD or remission after SSRI or ECT.

  12. Novel Expression Pattern of Cytosolic Gln Synthetase in Nitrogen-Fixing Root Nodules of the Actinorhizal Host, Datisca glomerata1[w

    PubMed Central

    Berry, Alison M.; Murphy, Terence M.; Okubara, Patricia A.; Jacobsen, Karin R.; Swensen, Susan M.; Pawlowski, Katharina

    2004-01-01

    Gln synthetase (GS) is the key enzyme of primary ammonia assimilation in nitrogen-fixing root nodules of legumes and actinorhizal (Frankia-nodulated) plants. In root nodules of Datisca glomerata (Datiscaceae), transcripts hybridizing to a conserved coding region of the abundant nodule isoform, DgGS1-1, are abundant in uninfected nodule cortical tissue, but expression was not detectable in the infected zone or in the nodule meristem. Similarly, the GS holoprotein is immunolocalized exclusively to the uninfected nodule tissue. Phylogenetic analysis of the full-length cDNA of DgGS1-1 indicates affinities with cytosolic GS genes from legumes, the actinorhizal species Alnus glutinosa, and nonnodulating species, Vitis vinifera and Hevea brasilensis. The D. glomerata nodule GS expression pattern is a new variant among reported root nodule symbioses and may reflect an unusual nitrogen transfer pathway from the Frankia nodule microsymbiont to the plant infected tissue, coupled to a distinctive nitrogen cycle in the uninfected cortical tissue. Arg, Gln, and Glu are the major amino acids present in D. glomerata nodules, but Arg was not detected at high levels in leaves or roots. Arg as a major nodule nitrogen storage form is not found in other root nodule types except in the phylogenetically related Coriaria. Catabolism of Arg through the urea cycle could generate free ammonium in the uninfected tissue where GS is expressed. PMID:15247391

  13. Relationships between plasma leptin levels, leptin G2548A, leptin receptor Gln223Arg polymorphisms and gestational diabetes mellitus in Chinese population

    PubMed Central

    Yang, Mei; Peng, Songxu; Li, Wei; Wan, Zhihua; Fan, Linlin; Du, Yukai

    2016-01-01

    The purposes of this study were to examine concentrations of leptin and biochemical parameters in gestational diabetes mellitus (GDM) patients and normal glucose tolerance (NGT) individuals, and also to explore the links of leptin (LEP) G2548A and leptin receptor (LEPR) Gln223Arg polymorphisms with leptin levels and GDM risk among Chinese. Our study included 357 GDM and 355 NGT individuals who were at 24~30 gestational weeks. Plasma leptin and insulin levels were analyzed by ELISA. Gene polymorphisms were genotyped using TaqMan real-time polymerase chain reaction assay. The results showed that plasma leptin levels were significantly higher in the impaired fasting glucose (IFG) group than NGT group (34.35 (26.54, 56.48) ng/mL vs 26.31 (17.99, 37.87) ng/mL, P < 0.05). Plasma leptin levels correlated with plasma fasting insulin levels, pre-pregnant body mass index, homeostasis model assessment-insulin resistance and quantitative insulin sensitivity check index both in GDM and NGT group (P < 0.05). However, neither LEP G2548A nor LEPR Gln223Arg polymorphisms were significantly associated with GDM risk and plasma leptin levels (P > 0.05). Our findings showed that high leptin level was associated with GDM. And larger and more rigorous researches were needed to further explore the association of LEP and LEPR gene polymorphisms and GDM among Chinese population. PMID:27034205

  14. The complete mitochondrial genome sequence of Cynoglossus abbreviatus (Pleuronectiformes: Cynoglossidae) with control region translocation and tRNA-Gln gene inversion.

    PubMed

    Shi, Wei; Gong, Li; Kong, Xiao-Yu

    2016-05-01

    Cynoglossus abbreviatus (Cynoglossidae, Soleoidei) is characterized by a bilaterally asymmetrical with both eyes on the left side. In this study, the complete mitogenome of this tongue sole has been reported for the first time. The gene order in C. abbreviatus mitogenome possesses a novel rearrangement like other tonguefish. The tRNA-Gln gene moves from the light strand to the heavy strand, accompanied by tRNA-Ile gene shuffling, leaving a large non-coding region (88 bp) between these two tRNAs. Additionally, the control region translocates to the place between ND1 and tRNA-Gln genes. The total length is 16,417 bp, with 30.9%, 29.5%, 24.9% and 14.7% for A, T, C and G, respectively (60.4% for AT content). These molecular data will provide useful information about the mechanism of gene reorganization in Cynoglossidae mitogenome and further phylogenetic study on Pleuronectiformes.

  15. Inverse spin Hall effect by spin injection

    NASA Astrophysics Data System (ADS)

    Liu, S. Y.; Horing, Norman J. M.; Lei, X. L.

    2007-09-01

    Motivated by a recent experiment [S. O. Valenzuela and M. Tinkham, Nature (London) 442, 176 (2006)], the authors present a quantitative microscopic theory to investigate the inverse spin-Hall effect with spin injection into aluminum considering both intrinsic and extrinsic spin-orbit couplings using the orthogonalized-plane-wave method. Their theoretical results are in good agreement with the experimental data. It is also clear that the magnitude of the anomalous Hall resistivity is mainly due to contributions from extrinsic skew scattering.

  16. Generalized Momentum Control of the Spin-Stabilized Magnetospheric Multiscale (MMS) Formation

    NASA Technical Reports Server (NTRS)

    Benegalrao, Suyog; Queen, Steven; Shah, Neerav; Blackman, Kathleen

    2015-01-01

    Angular momentum control maneuvers required to keep spin-axis in science box. Traditional approach uses de-coupled modes for pointing, spin, nutation Impractical for MMS Frequency and Number of maneuvers (Orbit Control, Pointing, Nutation, Spin, four observatories, every 2-4 weeks). Difficult to implement de-coupled open-loop control with flexible wire booms. Desire a unified angular momentum controller. Comprehensively control pointing, spin, and nutation.

  17. Kagome spin ice

    NASA Astrophysics Data System (ADS)

    Mellado, Paula

    Spin ice in magnetic pyrochlore oxides is a peculiar magnetic state. Like ordinary water ice, these materials are in apparent violation with the third law of thermodynamics, which dictates that the entropy of a system in thermal equilibrium vanishes as its temperature approaches absolute zero. In ice, a "zero-point" entropy is retained down to low temperatures thanks to a high number of low-energy positions of hydrogen ions associated with the Bernal-Fowler ice-rules. Spins in pyrochlore oxides Ho2Ti 2O7 and Dy2Ti2O7 exhibit a similar degeneracy of ground states and thus also have a sizable zero-point entropy. A recent discovery of excitations carrying magnetic charges in pyrochlore spin ice adds another interesting dimension to these magnets. This thesis is devoted to a theoretical study of a two-dimensional version of spin ice whose spins reside on kagome, a lattice of corner-sharing triangles. It covers two aspects of this frustrated classical spin system: the dynamics of artificial spin ice in a network of magnetic nanowires and the thermodynamics of crystalline spin ice. Magnetization dynamics in artificial spin ice is mediated by the emission, propagation and absorption of domain walls in magnetic nanowires. The dynamics shows signs of self-organized behavior such as avalanches. The theoretical model compares favorably to recent experiments. The thermodynamics of the microscopic version of spin ice on kagome is examined through analytical calculations and numerical simulations. The results show that, in addition to the high-temperature paramagnetic phase and the low-temperature phase with magnetic order, spin ice on kagome may have an intermediate phase with fluctuating spins and ordered magnetic charges. This work is concluded with a calculation of the entropy of kagome spin ice at zero temperature when one of the sublattices is pinned by an applied magnetic field and the system breaks up into independent spin chains, a case of dimensional reduction.

  18. Ultrafast tristable spin memory of a coherent polariton gas.

    PubMed

    Cerna, R; Léger, Y; Paraïso, T K; Wouters, M; Morier-Genoud, F; Portella-Oberli, M T; Deveaud, B

    2013-01-01

    Non-linear interactions in coherent gases are not only at the origin of bright and dark solitons and superfluids; they also give rise to phenomena such as multistability, which hold great promise for the development of advanced photonic and spintronic devices. In particular, spinor multistability in strongly coupled semiconductor microcavities shows that the spin of hundreds of exciton-polaritons can be coherently controlled, opening the route to spin-optronic devices such as ultrafast spin memories, gates or even neuronal communication schemes. Here we demonstrate that switching between the stable spin states of a driven polariton gas can be controlled by ultrafast optical pulses. Although such a long-lived spin memory necessarily relies on strong and anisotropic spinor interactions within the coherent polariton gas, we also highlight the crucial role of non-linear losses and formation of a non-radiative particle reservoir for ultrafast spin switching.

  19. Information storage capacity of discrete spin systems

    SciTech Connect

    Yoshida, Beni

    2013-11-15

    Understanding the limits imposed on information storage capacity of physical systems is a problem of fundamental and practical importance which bridges physics and information science. There is a well-known upper bound on the amount of information that can be stored reliably in a given volume of discrete spin systems which are supported by gapped local Hamiltonians. However, all the previously known systems were far below this theoretical bound, and it remained open whether there exists a gapped spin system that saturates this bound. Here, we present a construction of spin systems which saturate this theoretical limit asymptotically by borrowing an idea from fractal properties arising in the Sierpinski triangle. Our construction provides not only the best classical error-correcting code which is physically realizable as the energy ground space of gapped frustration-free Hamiltonians, but also a new research avenue for correlated spin phases with fractal spin configurations. -- Highlights: •We propose a spin model with fractal ground states and study its coding properties. •We show that the model asymptotically saturates a theoretical limit on information storage capacity. •We discuss its relations to various theoretical physics problems.

  20. Cavity-Assisted Spin Orbit Coupling

    NASA Astrophysics Data System (ADS)

    Zhu, Chuanzhou; Dong, Lin; Pu, Han

    We consider a single ultracold atom trapped inside a single-mode optical cavity, where a two-photon Raman process induces an effective coupling between atom's pseudo-spin and external center-of-mass (COM) motion. Without the COM motion, this system is described by the Jaynes-Cummings (JC) model. We show how the atomic COM motion dramatically modifies the predictions based on the JC model. We also investigated the situation when cavity pumping and decay are taken into account. We take a quantum Master equation approach to study this open system and again show how the cavity-induced spin-orbit coupling affects the properties of the system.

  1. Cooper pairs spintronics in triplet spin valves.

    PubMed

    Romeo, F; Citro, R

    2013-11-27

    We study a spin valve with a triplet superconductor spacer intercalated between two ferromagnets with noncollinear magnetizations. We show that the magnetoresistance of the triplet spin valve depends on the relative orientations of the d vector, characterizing the superconducting order parameter, and the magnetization directions of the ferromagnetic layers. For devices characterized by a long superconductor, the effects of a polarized current sustained by Cooper pairs only are observed. In this regime, a supermagnetoresistance effect emerges, and the chiral symmetry of the order parameter of the superconducting spacer is easily recognized. Our findings open new perspectives in designing spintronics devices based on the cooperation of ferromagnetic and triplet correlations.

  2. Cooper pairs spintronics in triplet spin valves.

    PubMed

    Romeo, F; Citro, R

    2013-11-27

    We study a spin valve with a triplet superconductor spacer intercalated between two ferromagnets with noncollinear magnetizations. We show that the magnetoresistance of the triplet spin valve depends on the relative orientations of the d vector, characterizing the superconducting order parameter, and the magnetization directions of the ferromagnetic layers. For devices characterized by a long superconductor, the effects of a polarized current sustained by Cooper pairs only are observed. In this regime, a supermagnetoresistance effect emerges, and the chiral symmetry of the order parameter of the superconducting spacer is easily recognized. Our findings open new perspectives in designing spintronics devices based on the cooperation of ferromagnetic and triplet correlations. PMID:24329463

  3. Terahertz spin current pulses controlled by magnetic heterostructures.

    PubMed

    Kampfrath, T; Battiato, M; Maldonado, P; Eilers, G; Nötzold, J; Mährlein, S; Zbarsky, V; Freimuth, F; Mokrousov, Y; Blügel, S; Wolf, M; Radu, I; Oppeneer, P M; Münzenberg, M

    2013-04-01

    In spin-based electronics, information is encoded by the spin state of electron bunches. Processing this information requires the controlled transport of spin angular momentum through a solid, preferably at frequencies reaching the so far unexplored terahertz regime. Here, we demonstrate, by experiment and theory, that the temporal shape of femtosecond spin current bursts can be manipulated by using specifically designed magnetic heterostructures. A laser pulse is used to drive spins from a ferromagnetic iron thin film into a non-magnetic cap layer that has either low (ruthenium) or high (gold) electron mobility. The resulting transient spin current is detected by means of an ultrafast, contactless amperemeter based on the inverse spin Hall effect, which converts the spin flow into a terahertz electromagnetic pulse. We find that the ruthenium cap layer yields a considerably longer spin current pulse because electrons are injected into ruthenium d states, which have a much lower mobility than gold sp states. Thus, spin current pulses and the resulting terahertz transients can be shaped by tailoring magnetic heterostructures, which opens the door to engineering high-speed spintronic devices and, potentially, broadband terahertz emitters.

  4. Spin polarized transport in MoS2

    NASA Astrophysics Data System (ADS)

    Dankert, André; Pashaei, Parham; Mutta, Venkata Kamalakar; Dash, Saroj Prasad; Spintronic SPD Team

    The two-dimensional (2D) semiconductor MoS2 possesses a high potential for spintronic devices due to a rich spin-valley physics and large spin-orbit coupling. While there have been significant advances in studying the spin and valley dynamics in MoS2 using optical spectroscopy techniques, electronic spin transport in semiconducting MoS2 or its heterostructures have not yet been demonstrated. Here we report the electronic and spin transport properties in MoS2 employing ferromagnetic electrodes in a vertical device geometry. Such vertical devices with MoS2 channel length defined by the thickness of the 2D layer allow to investigate the spin injection, transport and detection. We observe a magnetoresistance effect over a large temperature range up to 300 K and investigate the temperature and bias dependence behavior. Using magnetotransport data and calculations we extract spin parameters in the MoS2 spin valve devices. These findings can open new avenues for exploring spin functionalities in 2D semiconductor heterostructures for spin logic applications.

  5. GlnR negatively regulates the transcription of the alanine dehydrogenase encoding gene ald in Amycolatopsis mediterranei U32 under nitrogen limited conditions via specific binding to its major transcription initiation site.

    PubMed

    Wang, Ying; Li, Chen; Duan, Na; Li, Bin; Ding, Xiao-Ming; Yao, Yu-Feng; Hu, Jun; Zhao, Guo-Ping; Wang, Jin

    2014-01-01

    Ammonium assimilation is catalyzed by two enzymatic pathways, i.e., glutamine synthetase/glutamate synthase (GS/GOGAT) and alanine dehydrogenase (AlaDH) in Amycolatopsis mediterranei U32. Under nitrogen-rich conditions, the AlaDH pathway is the major route for ammonium assimilation, while the GS/GOGAT pathway takes over when the extracellular nitrogen supply is limited. The global nitrogen regulator GlnR was previously characterized to activate the transcription of the GS encoding gene glnA in response to nitrogen limitation and is demonstrated in this study as a repressor for the transcription of the AlaDH encoding gene ald, whose regulation is consistent with the switch of the ammonium assimilation pathways from AlaDH to GS/GOGAT responding to nitrogen limitation. Three transcription initiation sites (TISs) of ald were determined with primer extension assay, among which transcription from aldP2 contributed the major transcripts under nitrogen-rich conditions but was repressed to an undetectable level in response to nitrogen limitation. Through DNase I footprinting assay, two separate regions were found to be protected by GlnR within ald promoter, within which three GlnR binding sites (a1, b1 sites in region I and a2 site in region II) were defined. Interestingly, the major TIS aldP2 is located in the middle of a2 site within region II. Therefore, one may easily conclude that GlnR represses the transcription of ald via specific binding to the GlnR binding sites, which obviously blocks the transcription initiation from aldP2 and therefore reduces ald transcripts.

  6. GlnR Negatively Regulates the Transcription of the Alanine Dehydrogenase Encoding Gene ald in Amycolatopsis mediterranei U32 under Nitrogen Limited Conditions via Specific Binding to Its Major Transcription Initiation Site

    PubMed Central

    Li, Bin; Ding, Xiao-Ming; Yao, Yu-Feng; Hu, Jun; Zhao, Guo-Ping; Wang, Jin

    2014-01-01

    Ammonium assimilation is catalyzed by two enzymatic pathways, i.e., glutamine synthetase/glutamate synthase (GS/GOGAT) and alanine dehydrogenase (AlaDH) in Amycolatopsis mediterranei U32. Under nitrogen-rich conditions, the AlaDH pathway is the major route for ammonium assimilation, while the GS/GOGAT pathway takes over when the extracellular nitrogen supply is limited. The global nitrogen regulator GlnR was previously characterized to activate the transcription of the GS encoding gene glnA in response to nitrogen limitation and is demonstrated in this study as a repressor for the transcription of the AlaDH encoding gene ald, whose regulation is consistent with the switch of the ammonium assimilation pathways from AlaDH to GS/GOGAT responding to nitrogen limitation. Three transcription initiation sites (TISs) of ald were determined with primer extension assay, among which transcription from aldP2 contributed the major transcripts under nitrogen-rich conditions but was repressed to an undetectable level in response to nitrogen limitation. Through DNase I footprinting assay, two separate regions were found to be protected by GlnR within ald promoter, within which three GlnR binding sites (a1, b1 sites in region I and a2 site in region II) were defined. Interestingly, the major TIS aldP2 is located in the middle of a2 site within region II. Therefore, one may easily conclude that GlnR represses the transcription of ald via specific binding to the GlnR binding sites, which obviously blocks the transcription initiation from aldP2 and therefore reduces ald transcripts. PMID:25144373

  7. Spin accumulation in the extrinsic spin Hall effect

    NASA Astrophysics Data System (ADS)

    Tse, Wang-Kong; Fabian, J.; Žutić, I.; Das Sarma, S.

    2005-12-01

    The drift-diffusion formalism for spin-polarized carrier transport in semiconductors is generalized to include spin-orbit coupling. The theory is applied to treat the extrinsic spin Hall effect using realistic boundary conditions. It is shown that carrier and spin-diffusion lengths are modified by the presence of spin-orbit coupling and that spin accumulation due to the extrinsic spin Hall effect is strongly and qualitatively influenced by boundary conditions. Analytical formulas for the spin-dependent carrier recombination rates and inhomogeneous spin densities and currents are presented.

  8. Spin-polarization and spin-dependent logic gates in a double quantum ring based on Rashba spin-orbit effect: Non-equilibrium Green's function approach

    SciTech Connect

    Eslami, Leila Esmaeilzadeh, Mahdi

    2014-02-28

    Spin-dependent electron transport in an open double quantum ring, when each ring is made up of four quantum dots and threaded by a magnetic flux, is studied. Two independent and tunable gate voltages are applied to induce Rashba spin-orbit effect in the quantum rings. Using non-equilibrium Green's function formalism, we study the effects of electron-electron interaction on spin-dependent electron transport and show that although the electron-electron interaction induces an energy gap, it has no considerable effect when the bias voltage is sufficiently high. We also show that the double quantum ring can operate as a spin-filter for both spin up and spin down electrons. The spin-polarization of transmitted electrons can be tuned from −1 (pure spin-down current) to +1 (pure spin-up current) by changing the magnetic flux and/or the gates voltage. Also, the double quantum ring can act as AND and NOR gates when the system parameters such as Rashba coefficient are properly adjusted.

  9. Selectable towline spin chute system

    NASA Technical Reports Server (NTRS)

    Vairo, Daniel M. (Inventor); Whipple, Raymond D. (Inventor)

    1991-01-01

    An emergency spin recovery parachute is presented that is housed within a centrally mounted housing on the aft end of an aircraft and connected to a ring fitting within the housing. Two selectively latching shackles connected to separate towlines are openly disposed adjacent the ring fitting. The towlines extend in opposite directions from the housing along the aircraft wing to attachment points adjacent the wing-tips where the other end of each towline is secured. Upon pilot command, one of the open shackles latches to the ring fitting to attach the towline connected thereto, and a second command signal deploys the parachute. Suitable break-away straps secure the towlines to the aircraft surface until the parachute is deployed and the resulting force on the towline attached to the parachute overcomes the straps and permits the towline to extend to the point of attachment to exert sufficient drag on the spinning aircraft to permit the pilot to regain control of the aircraft. To employ the parachute as a drag chute to reduce landing speeds, both shackles and their respective towlines are latched to the ring fitting.

  10. Spin Hall effects

    NASA Astrophysics Data System (ADS)

    Sinova, Jairo; Valenzuela, Sergio O.; Wunderlich, J.; Back, C. H.; Jungwirth, T.

    2015-10-01

    Spin Hall effects are a collection of relativistic spin-orbit coupling phenomena in which electrical currents can generate transverse spin currents and vice versa. Despite being observed only a decade ago, these effects are already ubiquitous within spintronics, as standard spin-current generators and detectors. Here the theoretical and experimental results that have established this subfield of spintronics are reviewed. The focus is on the results that have converged to give us the current understanding of the phenomena, which has evolved from a qualitative to a more quantitative measurement of spin currents and their associated spin accumulation. Within the experimental framework, optical-, transport-, and magnetization-dynamics-based measurements are reviewed and linked to both phenomenological and microscopic theories of the effect. Within the theoretical framework, the basic mechanisms in both the extrinsic and intrinsic regimes are reviewed, which are linked to the mechanisms present in their closely related phenomenon in ferromagnets, the anomalous Hall effect. Also reviewed is the connection to the phenomenological treatment based on spin-diffusion equations applicable to certain regimes, as well as the spin-pumping theory of spin generation used in many measurements of the spin Hall angle. A further connection to the spin-current-generating spin Hall effect to the inverse spin galvanic effect is given, in which an electrical current induces a nonequilibrium spin polarization. This effect often accompanies the spin Hall effect since they share common microscopic origins. Both can exhibit the same symmetries when present in structures comprising ferromagnetic and nonmagnetic layers through their induced current-driven spin torques or induced voltages. Although a short chronological overview of the evolution of the spin Hall effect field and the resolution of some early controversies is given, the main body of this review is structured from a pedagogical

  11. Spin-Dependent Transport in Fe/GaAs(100)/Fe Vertical Spin-Valves.

    PubMed

    Wong, P K Johnny; Zhang, Wen; Wu, Jing; Will, Iain G; Xu, Yongbing; Xia, Ke; Holmes, Stuart N; Farrer, Ian; Beere, Harvey E; Ritchie, Dave A

    2016-07-19

    The integration of magnetic materials with semiconductors will lead to the development of the next spintronics devices such as spin field effect transistor (SFET), which is capable of both data storage and processing. While the fabrication and transport studies of lateral SFET have attracted greatly attentions, there are only few studies of vertical devices, which may offer the opportunity for the future three-dimensional integration. Here, we provide evidence of two-terminal electrical spin injection and detection in Fe/GaAs/Fe vertical spin-valves (SVs) with the GaAs layer of 50 nanometers thick and top and bottom Fe electrodes deposited by molecular beam epitaxy. The spin-valve effect, which corresponds to the individual switching of the top and bottom Fe layers, is bias dependent and observed up to 20 K. We propose that the strongly bias- and temperature-dependent MR is associated with spin transport at the interfacial Fe/GaAs Schottky contacts and in the GaAs membranes, where balance between the barrier profiles as well as the dwell time to spin lifetime ratio are crucial factors for determining the device operations. The demonstration of the fabrication and spin injection in the vertical SV with a semiconductor interlayer is expected to open a new avenue in exploring the SFET.

  12. Spin-Dependent Transport in Fe/GaAs(100)/Fe Vertical Spin-Valves

    PubMed Central

    Wong, P. K. Johnny; Zhang, Wen; Wu, Jing; Will, Iain G.; Xu, Yongbing; Xia, Ke; Holmes, Stuart N.; Farrer, Ian; Beere, Harvey E.; Ritchie, Dave A.

    2016-01-01

    The integration of magnetic materials with semiconductors will lead to the development of the next spintronics devices such as spin field effect transistor (SFET), which is capable of both data storage and processing. While the fabrication and transport studies of lateral SFET have attracted greatly attentions, there are only few studies of vertical devices, which may offer the opportunity for the future three-dimensional integration. Here, we provide evidence of two-terminal electrical spin injection and detection in Fe/GaAs/Fe vertical spin-valves (SVs) with the GaAs layer of 50 nanometers thick and top and bottom Fe electrodes deposited by molecular beam epitaxy. The spin-valve effect, which corresponds to the individual switching of the top and bottom Fe layers, is bias dependent and observed up to 20 K. We propose that the strongly bias- and temperature-dependent MR is associated with spin transport at the interfacial Fe/GaAs Schottky contacts and in the GaAs membranes, where balance between the barrier profiles as well as the dwell time to spin lifetime ratio are crucial factors for determining the device operations. The demonstration of the fabrication and spin injection in the vertical SV with a semiconductor interlayer is expected to open a new avenue in exploring the SFET. PMID:27432047

  13. Spin-Dependent Transport in Fe/GaAs(100)/Fe Vertical Spin-Valves

    NASA Astrophysics Data System (ADS)

    Wong, P. K. Johnny; Zhang, Wen; Wu, Jing; Will, Iain G.; Xu, Yongbing; Xia, Ke; Holmes, Stuart N.; Farrer, Ian; Beere, Harvey E.; Ritchie, Dave A.

    2016-07-01

    The integration of magnetic materials with semiconductors will lead to the development of the next spintronics devices such as spin field effect transistor (SFET), which is capable of both data storage and processing. While the fabrication and transport studies of lateral SFET have attracted greatly attentions, there are only few studies of vertical devices, which may offer the opportunity for the future three-dimensional integration. Here, we provide evidence of two-terminal electrical spin injection and detection in Fe/GaAs/Fe vertical spin-valves (SVs) with the GaAs layer of 50 nanometers thick and top and bottom Fe electrodes deposited by molecular beam epitaxy. The spin-valve effect, which corresponds to the individual switching of the top and bottom Fe layers, is bias dependent and observed up to 20 K. We propose that the strongly bias- and temperature-dependent MR is associated with spin transport at the interfacial Fe/GaAs Schottky contacts and in the GaAs membranes, where balance between the barrier profiles as well as the dwell time to spin lifetime ratio are crucial factors for determining the device operations. The demonstration of the fabrication and spin injection in the vertical SV with a semiconductor interlayer is expected to open a new avenue in exploring the SFET.

  14. Spin-Dependent Transport in Fe/GaAs(100)/Fe Vertical Spin-Valves.

    PubMed

    Wong, P K Johnny; Zhang, Wen; Wu, Jing; Will, Iain G; Xu, Yongbing; Xia, Ke; Holmes, Stuart N; Farrer, Ian; Beere, Harvey E; Ritchie, Dave A

    2016-01-01

    The integration of magnetic materials with semiconductors will lead to the development of the next spintronics devices such as spin field effect transistor (SFET), which is capable of both data storage and processing. While the fabrication and transport studies of lateral SFET have attracted greatly attentions, there are only few studies of vertical devices, which may offer the opportunity for the future three-dimensional integration. Here, we provide evidence of two-terminal electrical spin injection and detection in Fe/GaAs/Fe vertical spin-valves (SVs) with the GaAs layer of 50 nanometers thick and top and bottom Fe electrodes deposited by molecular beam epitaxy. The spin-valve effect, which corresponds to the individual switching of the top and bottom Fe layers, is bias dependent and observed up to 20 K. We propose that the strongly bias- and temperature-dependent MR is associated with spin transport at the interfacial Fe/GaAs Schottky contacts and in the GaAs membranes, where balance between the barrier profiles as well as the dwell time to spin lifetime ratio are crucial factors for determining the device operations. The demonstration of the fabrication and spin injection in the vertical SV with a semiconductor interlayer is expected to open a new avenue in exploring the SFET. PMID:27432047

  15. Stripe phase and double-roton excitations in interacting spin-orbit-coupled spin-1 Bose-Einstein condensates

    NASA Astrophysics Data System (ADS)

    Sun, Kuei; Qu, Chunlei; Xu, Yong; Zhang, Yongping; Zhang, Chuanwei

    Spin-orbit (SO) coupling plays a major role in many important phenomena in condensed matter physics. However, the SO coupling physics in high-spin systems, especially with superfluids, has not been well explored because of the spin half of electrons in solids. In this context, the recent experimental realization of spin-orbit coupling in spin-1 Bose-Einstein condensates (BECs) has opened a completely new avenue for exploring SO-coupled high-spin superfluids. Nevertheless, the experiment has only revealed the single-particle physics of the system. Here, we study the effects of interactions between atoms on the ground states and collective excitations of SO-coupled spin-1 BECs in the presence of a spin-tensor potential. We find that ferromagnetic interaction between atoms can induce a stripe phase exhibiting two modulating patterns. We characterize the phase transitions between different phases using the spin-tensor density as well as the collective dipole motion of the BEC. We show that there exists a new type of double maxon-roton structure in the Bogoliubov-excitation spectrum, attributing to the three band minima of the SO-coupled spin-1 BEC. Our work could motivate further theoretical and experimental study along this direction.

  16. Pulsed electron-electron double resonance spectroscopy between a high-spin Mn(2+) ion and a nitroxide spin label.

    PubMed

    Akhmetzyanov, D; Plackmeyer, J; Endeward, B; Denysenkov, V; Prisner, T F

    2015-03-14

    Pulsed Electron-Electron Double Resonance (PELDOR) has attracted considerable attention for biomolecular applications, as it affords precise measurements of distances between pairs of spin labels in the range of 1.5-8 nm. Usually nitroxide moieties incorporated by site-directed spin labelling with cysteine residues are used as spin probes in protein systems. Recently, naturally occurring cofactors and metal ions have also been explored as paramagnetic spin species for such measurements. In this work we investigate the performance of PELDOR between a nitroxide spin label and a high-spin Mn(2+) ion in a synthetic model compound at Q-band (34 GHz) and G-band (180 GHz). We demonstrate that the distances obtained with high-frequency PELDOR are in good agreement with structural predictions. At Q-band frequencies experiments have been performed by probing either the high-spin Mn(2+) ion or the nitroxide spin label. At G-band frequencies we have been able to detect changes in the dipolar oscillation frequency, depending on the pump-probe positions across the g-tensor resolved nitroxide EPR spectrum. These changes result from the restricted mobility of the nitroxide spin label in the model compound. Our results demonstrate that the high-spin Mn(2+) ion can be used for precise distance measurements and open the doors for many biological applications, as naturally occurring Mg(2+) sites can be readily exchanged for Mn(2+). PMID:25669744

  17. Spin-flip configuration interaction singles with exact spin-projection: Theory and applications to strongly correlated systems

    SciTech Connect

    Tsuchimochi, Takashi

    2015-10-14

    Spin-flip approaches capture static correlation with the same computational scaling as the ordinary single reference methods. Here, we extend spin-flip configuration interaction singles (SFCIS) by projecting out intrinsic spin-contamination to make it spin-complete, rather than by explicitly complementing it with spin-coupled configurations. We give a general formalism of spin-projection for SFCIS, applicable to any spin states. The proposed method is viewed as a natural unification of SFCIS and spin-projected CIS to achieve a better qualitative accuracy at a low computational cost. While our wave function ansatz is more compact than previously proposed spin-complete SF approaches, it successfully offers more general static correlation beyond biradicals without sacrificing good quantum numbers. It is also shown that our method is invariant with respect to open-shell orbital rotations, due to the uniqueness of spin-projection. We will report benchmark calculations to demonstrate its qualitative performance on strongly correlated systems, including conical intersections that appear both in ground-excited and excited-excited degeneracies.

  18. Spin caloritronics in graphene

    SciTech Connect

    Ghosh, Angsula; Frota, H. O.

    2015-06-14

    Spin caloritronics, the combination of spintronics with thermoelectrics, exploiting both the intrinsic spin of the electron and its associated magnetic moment in addition to its fundamental electronic charge and temperature, is an emerging technology mainly in the development of low-power-consumption technology. In this work, we study the thermoelectric properties of a Rashba dot attached to two single layer/bilayer graphene sheets as leads. The temperature difference on the two graphene leads induces a spin current, which depends on the temperature and chemical potential. We demonstrate that the Rashba dot behaves as a spin filter for selected values of the chemical potential and is able to filter electrons by their spin orientation. The spin thermopower has also been studied where the effects of the chemical potential, temperature, and also the Rashba term have been observed.

  19. Spin caloritronics in graphene

    NASA Astrophysics Data System (ADS)

    Frota, H. O.; Ghosh, Angsula

    2014-08-01

    Spin caloritronics, the combination of spintronics with thermoelectrics, based on spin and heat transport has attracted a great attention mainly in the development of low-power-consumption technology. In this work we study the thermoelectric properties of a quantum dot attached to two single layer graphene sheets as leads. The temperature difference on the two graphene leads induces a spin current which depends on the temperature and chemical potential. We demonstrate that the quantum dot behaves as a spin filter for selected values of the chemical potential and is able to filter electrons by their spin orientation. The spin thermopower has also been studied where the effects of the chemical potential, temperature and also the Coulomb repulsion due to the double occupancy of an energy level have been observed.

  20. Electric field effects on spin accumulation in Nb-doped SrTiO{sub 3} using tunable spin injection contacts at room temperature

    SciTech Connect

    Kamerbeek, A. M.; Vries, E. K. de; Wees, B. J. van; Banerjee, T.; Dankert, A.; Dash, S. P.

    2014-05-26

    We report on features in charge transport and spin injection in an oxide semiconductor, Nb-doped SrTiO{sub 3}. This is demonstrated using electrically tunable spin injection contacts which exploit the large electric field at the interface and its interplay with the relative permittivity of the semiconductor. We realize spin accumulation in Nb-doped SrTiO{sub 3} which displays a unique dependence of the spin lifetime with bias polarity. These findings suggest a strong influence of the interface electric field on the charge transport as well as on spin accumulation unlike in conventional semiconductors and opens up promising avenues in oxide spintronics.

  1. Picosecond Spin Caloritronics

    NASA Astrophysics Data System (ADS)

    Cahill, David G.

    The coupling of spin and heat, i.e., spin caloritronics, gives rise to new physical phenomena in nanoscale spin devices and new ways to manipulate local magnetization. Our work in this field takes advantage of recent advances in the measurement and understanding of heat transport at the nanoscale using ultrafast lasers. We use a picosecond duration pump laser pulses as a source of heat and picosecond duration probe laser pulses to detect changes in temperature, spin accumulation, and spin transfer torque using a combination of time-domain thermoreflectance and time-resolved magneto-optic Kerr effect Our pump-probe optical methods enable us to change the temperature of ferromagnetic layers on a picosecond time-scale and generate enormous heat fluxes on the order of 100 GW m-2 that persist for ~ 30 ps. Thermally-driven ultrafast demagnetization of a perpendicular ferromagnet leads to spin accumulation in a normal metal and spin transfer torque in an in-plane ferromagnet. The data are well described by models of spin generation and transport based on differences and gradients of thermodynamic parameters. The spin-dependent Seebeck effect of a perpendicular ferromagnetic layer converts a heat current into spin current, which in turn can be used to exert a spin transfer torque (STT) on a second ferromagnetic layer with in-plane magnetization. Using a [Co,Ni] multilayer as the source of spin, an energy fluence of ~ 4 J m-2 creates thermal STT sufficient to induce ~ 1 % tilting of the magnetization of a 2 nm-thick CoFeB layer.

  2. Spin coating apparatus

    DOEpatents

    Torczynski, John R.

    2000-01-01

    A spin coating apparatus requires less cleanroom air flow than prior spin coating apparatus to minimize cleanroom contamination. A shaped exhaust duct from the spin coater maintains process quality while requiring reduced cleanroom air flow. The exhaust duct can decrease in cross section as it extends from the wafer, minimizing eddy formation. The exhaust duct can conform to entrainment streamlines to minimize eddy formation and reduce interprocess contamination at minimal cleanroom air flow rates.

  3. Rockets for spin recovery

    NASA Technical Reports Server (NTRS)

    Whipple, R. D.

    1980-01-01

    The potential effectiveness of rockets as an auxiliary means for an aircraft to effect recovery from spins was investigated. The advances in rocket technology produced by the space effort suggested that currently available systems might obviate many of the problems encountered in earlier rocket systems. A modern fighter configuration known to exhibit a flat spin mode was selected. An analytical study was made of the thrust requirements for a rocket spin recovery system for the subject configuration. These results were then applied to a preliminary systems study of rocket components appropriate to the problem. Subsequent spin tunnel tests were run to evaluate the analytical results.

  4. Spin-mediated Hybrid Quantum Optomechanics

    NASA Astrophysics Data System (ADS)

    Shaffer, Airlia; Chang, Laura; Patil, Yogesh Sharad; Bariani, Francesco; Singh, Swati; Date, Aditya; Chakram, Srivatsan; Schwab, Keith; Meystre, Pierre; Vengalattore, Mukund

    2015-05-01

    We describe our realization of a hybrid quantum system where a macroscopic mechanical resonator is coupled to the collective spin of an ultracold gas through a remote optical interface. Through this interface, the spin ensemble is capable of sympathetic cooling, sub-SQL detection and quantum control of the mechanical resonator. As such, this hybrid quantum system presents a powerful scheme to combine the robustness of the mesoscopic resonator with the sensitivity and coherence of the spin ensemble. Our ongoing studies of this system include various aspects of quantum metrology and the out-of-equilibrium dynamics of open quantum systems. This work is supported by the ARO MURI on non-equilibrium dynamics, the DARPA QuASAR program through a grant from the ARO and an NSF INSPIRE award.

  5. Terahertz Antiferromagnetic Spin Hall Nano-Oscillator

    NASA Astrophysics Data System (ADS)

    Cheng, Ran; Xiao, Di; Brataas, Arne

    2016-05-01

    We consider the current-induced dynamics of insulating antiferromagnets in a spin Hall geometry. Sufficiently large in-plane currents perpendicular to the Néel order trigger spontaneous oscillations at frequencies between the acoustic and the optical eigenmodes. The direction of the driving current determines the chirality of the excitation. When the current exceeds a threshold, the combined effect of spin pumping and current-induced torques introduces a dynamic feedback that sustains steady-state oscillations with amplitudes controllable via the applied current. The ac voltage output is calculated numerically as a function of the dc current input for different feedback strengths. Our findings open a route towards terahertz antiferromagnetic spin-torque oscillators.

  6. Graphene-based half-metal and spin-semiconductor for spintronic applications

    NASA Astrophysics Data System (ADS)

    Qi, Jingshan; Chen, Xiaofang; Hu, Kaige; Feng, Ji

    2016-03-01

    In this letter we propose a strategy to make graphene become a half-metal or spin-semiconductor by combining the magnetic proximity effects and sublattice symmetry breaking in graphone/graphene and graphone/graphene/BN heterostructures. Exchange interactions lift the spin degeneracy and sublattice symmetry breaking opens a band gap in graphene. More interestingly, the gap opening depends on the spin direction and the competition between the sublattice asymmetry and exchange field determines the system is a half-metal or a spin-semiconductor. By first-principles calculations and a low-energy effective model analysis, we elucidate the underlying physical mechanism of spin-dependent gap opening and spin degeneracy splitting. This offers an alternative practical platform for graphene-based spintronics.

  7. Influence of ADRB2 Gln27Glu and ADRB3 Trp64Arg polymorphisms on body weight and body composition changes after a controlled weight-loss intervention.

    PubMed

    Szendrei, Barbara; González-Lamuño, Domingo; Amigo, Teresa; Wang, Guan; Pitsiladis, Yannis; Benito, Pedro J; Gomez-Candela, Carmen; Calderón, Francisco J; Cupeiro, Rocío

    2016-03-01

    The β-2 and β-3 adrenergic receptors (ADRB2 and ADRB3) are thought to play a role in energy expenditure and lipolysis. However, the effects of the ADRB2 glutamine (Gln) 27 glutamic acid (glutamate) (Glu) and ADRB3 tryptophan (Trp) 64 arginine (Arg) polymorphisms on weight loss remain controversial. The aim of this study was to investigate the effect of these polymorphisms on changes in weight and body composition during a controlled weight-loss program. One hundred seventy-three healthy overweight and obese participants (91 women, 82 men) aged 18-50 years participated in a 22-week-long intervention based on a hypocaloric diet and exercise. They were randomly assigned to 1 of 4 groups: strength, endurance, strength and endurance combined, and physical activity recommendations only. Body weight, body mass index (BMI), and body composition variables were assessed before and after the intervention. Genetic analysis was carried out according to standard protocols. No effect of the ADRB2 gene was shown on final weight, BMI, or body composition, although in the supervised male group, Glu27 carriers tended to have greater weight (p = 0.019, 2.5 kg) and BMI (p = 0.019, 0.88 kg/m(2)) reductions than did noncarriers. There seems to be an individual effect of the ADRB3 polymorphism on fat mass (p = 0.004) and fat percentage (p = 0.036), in addition to an interaction with exercise for fat mass (p = 0.038). After the intervention, carriers of the Arg64 allele had a greater fat mass and fat percentage than did noncarriers (p = 0.004, 2.8 kg). In conclusion, the ADRB2 Gln27Glu and ADRB3 Trp64Arg polymorphisms may influence weight loss and body composition, although the current evidence is weak; however, further studies are necessary to clarify their roles. PMID:26888112

  8. Influence of ADRB2 Gln27Glu and ADRB3 Trp64Arg polymorphisms on body weight and body composition changes after a controlled weight-loss intervention.

    PubMed

    Szendrei, Barbara; González-Lamuño, Domingo; Amigo, Teresa; Wang, Guan; Pitsiladis, Yannis; Benito, Pedro J; Gomez-Candela, Carmen; Calderón, Francisco J; Cupeiro, Rocío

    2016-03-01

    The β-2 and β-3 adrenergic receptors (ADRB2 and ADRB3) are thought to play a role in energy expenditure and lipolysis. However, the effects of the ADRB2 glutamine (Gln) 27 glutamic acid (glutamate) (Glu) and ADRB3 tryptophan (Trp) 64 arginine (Arg) polymorphisms on weight loss remain controversial. The aim of this study was to investigate the effect of these polymorphisms on changes in weight and body composition during a controlled weight-loss program. One hundred seventy-three healthy overweight and obese participants (91 women, 82 men) aged 18-50 years participated in a 22-week-long intervention based on a hypocaloric diet and exercise. They were randomly assigned to 1 of 4 groups: strength, endurance, strength and endurance combined, and physical activity recommendations only. Body weight, body mass index (BMI), and body composition variables were assessed before and after the intervention. Genetic analysis was carried out according to standard protocols. No effect of the ADRB2 gene was shown on final weight, BMI, or body composition, although in the supervised male group, Glu27 carriers tended to have greater weight (p = 0.019, 2.5 kg) and BMI (p = 0.019, 0.88 kg/m(2)) reductions than did noncarriers. There seems to be an individual effect of the ADRB3 polymorphism on fat mass (p = 0.004) and fat percentage (p = 0.036), in addition to an interaction with exercise for fat mass (p = 0.038). After the intervention, carriers of the Arg64 allele had a greater fat mass and fat percentage than did noncarriers (p = 0.004, 2.8 kg). In conclusion, the ADRB2 Gln27Glu and ADRB3 Trp64Arg polymorphisms may influence weight loss and body composition, although the current evidence is weak; however, further studies are necessary to clarify their roles.

  9. Effect of spin rotation coupling on spin transport

    SciTech Connect

    Chowdhury, Debashree Basu, B.

    2013-12-15

    We have studied the spin rotation coupling (SRC) as an ingredient to explain different spin-related issues. This special kind of coupling can play the role of a Dresselhaus like coupling in certain conditions. Consequently, one can control the spin splitting, induced by the Dresselhaus like term, which is unusual in a semiconductor heterostructure. Within this framework, we also study the renormalization of the spin-dependent electric field and spin current due to the k{sup →}⋅p{sup →} perturbation, by taking into account the interband mixing in the rotating system. In this paper we predict the enhancement of the spin-dependent electric field resulting from the renormalized spin rotation coupling. The renormalization factor of the spin electric field is different from that of the SRC or Zeeman coupling. The effect of renormalized SRC on spin current and Berry curvature is also studied. Interestingly, in the presence of this SRC-induced SOC it is possible to describe spin splitting as well as spin galvanic effect in semiconductors. -- Highlights: •Studied effect of spin rotation coupling on the spin electric field, spin current and Berry curvature. •In the k{sup →}⋅p{sup →} framework we study the renormalization of spin electric field and spin current. •For an inertial system we have discussed the spin splitting. •Expression for the Berry phase in the inertial system is discussed. •The inertial spin galvanic effect is studied.

  10. Electron spin susceptibility of superconductors

    SciTech Connect

    Levitov, L.S.; Nazarov, Y.V.; Eliashberg, G.M.

    1985-03-10

    The effect of spin polarization due to the Meissner currents on the electron spin susceptibility of a superconductor is studied. This effect accounts for a susceptibility considerably stronger than that of a normal metal. The spin distribution is discussed.

  11. Spin splitting generated in a Y-shaped semiconductor nanostructure with a quantum point contact

    SciTech Connect

    Wójcik, P. Adamowski, J. Wołoszyn, M.; Spisak, B. J.

    2015-07-07

    We have studied the spin splitting of the current in the Y-shaped semiconductor nanostructure with a quantum point contact (QPC) in a perpendicular magnetic field. Our calculations show that the appropriate tuning of the QPC potential and the external magnetic field leads to an almost perfect separation of the spin-polarized currents: electrons with opposite spins flow out through different output branches. The spin splitting results from the joint effect of the QPC, the spin Zeeman splitting, and the electron transport through the edge states formed in the nanowire at the sufficiently high magnetic field. The Y-shaped nanostructure can be used to split the unpolarized current into two spin currents with opposite spins as well as to detect the flow of the spin current. We have found that the separation of the spin currents is only slightly affected by the Rashba spin-orbit coupling. The spin-splitter device is an analogue of the optical device—the birefractive crystal that splits the unpolarized light into two beams with perpendicular polarizations. In the magnetic-field range, in which the current is carried through the edges states, the spin splitting is robust against the spin-independent scattering. This feature opens up a possibility of the application of the Y-shaped nanostructure as a non-ballistic spin-splitter device in spintronics.

  12. Coherent transport and manipulation of spins in indirect-exciton nanostructures

    NASA Astrophysics Data System (ADS)

    Violante, A.; Hey, R.; Santos, P. V.

    2015-03-01

    We report on the coherent control and transport of indirect-exciton (IX) spins in GaAs double quantum well (DQW) nanostructures. The spin dynamics was investigated by optically generating spins using a focused, circularly polarized light spot and by probing their spatial distribution using spatially and polarization resolved photoluminescence spectroscopy. Optically injected IX spins precess while moving over distances exceeding 20 μ m from the excitation spot with a precession length that depends on the spin transport direction as well as on the bias applied across the DQW structure. This behavior is attributed to the spin precession in the effective magnetic field induced by the spin-orbit interaction. From the dependence of the spin dynamics on the transport direction, bias, and external magnetic fields we directly determined the Dresselhaus and Rashba electron spin splitting coefficients for the DQW structure. The precession dynamics is essentially independent of the IX density, thus indicating that the long spin lifetimes are not associated with IX collective effects. The long IX lifetimes, together with the negligible contribution of holes to the spin dynamics, are rather attributed to spatial separation of the electron and hole wave functions by the electric field, which reduces the electron-hole exchange interaction. If extended to the single-exciton regime, the present results on coherent spin precession over long transport distances as well as the control of the spin vector using electric and magnetic fields open the way for the application of IX spins in quantum information processing.

  13. Spin splitting generated in a Y-shaped semiconductor nanostructure with a quantum point contact

    NASA Astrophysics Data System (ADS)

    Wójcik, P.; Adamowski, J.; Wołoszyn, M.; Spisak, B. J.

    2015-07-01

    We have studied the spin splitting of the current in the Y-shaped semiconductor nanostructure with a quantum point contact (QPC) in a perpendicular magnetic field. Our calculations show that the appropriate tuning of the QPC potential and the external magnetic field leads to an almost perfect separation of the spin-polarized currents: electrons with opposite spins flow out through different output branches. The spin splitting results from the joint effect of the QPC, the spin Zeeman splitting, and the electron transport through the edge states formed in the nanowire at the sufficiently high magnetic field. The Y-shaped nanostructure can be used to split the unpolarized current into two spin currents with opposite spins as well as to detect the flow of the spin current. We have found that the separation of the spin currents is only slightly affected by the Rashba spin-orbit coupling. The spin-splitter device is an analogue of the optical device—the birefractive crystal that splits the unpolarized light into two beams with perpendicular polarizations. In the magnetic-field range, in which the current is carried through the edges states, the spin splitting is robust against the spin-independent scattering. This feature opens up a possibility of the application of the Y-shaped nanostructure as a non-ballistic spin-splitter device in spintronics.

  14. Spin Waves in Quasiequilibrium Spin Systems

    SciTech Connect

    Bedell, Kevin S.; Dahal, Hari P.

    2006-07-28

    Using the Landau Fermi liquid theory we discovered a new propagating transverse spin wave in a paramagnetic system which is driven slightly out of equilibrium without applying an external magnetic field. We find a gapless mode which describes the uniform precession of the magnetization in the absence of a magnetic field. We also find a gapped mode associated with the precession of the spin current around the internal field. The gapless mode has a quadratic dispersion leading to a T{sup 3/2} contribution to the specific heat. These modes significantly contribute to the dynamic structure function.

  15. Single spin magnetic resonance

    NASA Astrophysics Data System (ADS)

    Wrachtrup, Jörg; Finkler, Amit

    2016-08-01

    Different approaches have improved the sensitivity of either electron or nuclear magnetic resonance to the single spin level. For optical detection it has essentially become routine to observe a single electron spin or nuclear spin. Typically, the systems in use are carefully designed to allow for single spin detection and manipulation, and of those systems, diamond spin defects rank very high, being so robust that they can be addressed, read out and coherently controlled even under ambient conditions and in a versatile set of nanostructures. This renders them as a new type of sensor, which has been shown to detect single electron and nuclear spins among other quantities like force, pressure and temperature. Adapting pulse sequences from classic NMR and EPR, and combined with high resolution optical microscopy, proximity to the target sample and nanoscale size, the diamond sensors have the potential to constitute a new class of magnetic resonance detectors with single spin sensitivity. As diamond sensors can be operated under ambient conditions, they offer potential application across a multitude of disciplines. Here we review the different existing techniques for magnetic resonance, with a focus on diamond defect spin sensors, showing their potential as versatile sensors for ultra-sensitive magnetic resonance with nanoscale spatial resolution.

  16. Spin coating of electrolytes

    DOEpatents

    Stetter, Joseph R.; Maclay, G. Jordan

    1989-01-01

    Methods for spin coating electrolytic materials onto substrates are disclosed. More particularly, methods for depositing solid coatings of ion-conducting material onto planar substrates and onto electrodes are disclosed. These spin coating methods are employed to fabricate electrochemical sensors for use in measuring, detecting and quantifying gases and liquids.

  17. Coherent spin-networks

    SciTech Connect

    Bianchi, Eugenio; Magliaro, Elena; Perini, Claudio

    2010-07-15

    In this paper we discuss a proposal of coherent states for loop quantum gravity. These states are labeled by a point in the phase space of general relativity as captured by a spin-network graph. They are defined as the gauge-invariant projection of a product over links of Hall's heat kernels for the cotangent bundle of SU(2). The labels of the state are written in terms of two unit vectors, a spin and an angle for each link of the graph. The heat-kernel time is chosen to be a function of the spin. These labels are the ones used in the spin-foam setting and admit a clear geometric interpretation. Moreover, the set of labels per link can be written as an element of SL(2,C). These states coincide with Thiemann's coherent states with the area operator as complexifier. We study the properties of semiclassicality of these states and show that, for large spins, they reproduce a superposition over spins of spin-networks with nodes labeled by Livine-Speziale coherent intertwiners. Moreover, the weight associated to spins on links turns out to be given by a Gaussian times a phase as originally proposed by Rovelli.

  18. Sparkling and Spinning Words.

    ERIC Educational Resources Information Center

    Carlson, Ruth Kearney

    1964-01-01

    Teachers should foster in children's writing the use of words with "sparkle" and "spin"--"sparkle" implying brightness and vitality, "spin" connoting industry, patience, and painstaking work. By providing creative listening experiences with good children's or adult literature, the teacher can encourage students to broaden their imaginations and…

  19. Single spin magnetic resonance.

    PubMed

    Wrachtrup, Jörg; Finkler, Amit

    2016-08-01

    Different approaches have improved the sensitivity of either electron or nuclear magnetic resonance to the single spin level. For optical detection it has essentially become routine to observe a single electron spin or nuclear spin. Typically, the systems in use are carefully designed to allow for single spin detection and manipulation, and of those systems, diamond spin defects rank very high, being so robust that they can be addressed, read out and coherently controlled even under ambient conditions and in a versatile set of nanostructures. This renders them as a new type of sensor, which has been shown to detect single electron and nuclear spins among other quantities like force, pressure and temperature. Adapting pulse sequences from classic NMR and EPR, and combined with high resolution optical microscopy, proximity to the target sample and nanoscale size, the diamond sensors have the potential to constitute a new class of magnetic resonance detectors with single spin sensitivity. As diamond sensors can be operated under ambient conditions, they offer potential application across a multitude of disciplines. Here we review the different existing techniques for magnetic resonance, with a focus on diamond defect spin sensors, showing their potential as versatile sensors for ultra-sensitive magnetic resonance with nanoscale spatial resolution.

  20. Spin-orbit photonics

    NASA Astrophysics Data System (ADS)

    Cardano, Filippo; Marrucci, Lorenzo

    2015-12-01

    Spin-orbit optical phenomena involve the interaction of the photon spin with the light wave propagation and spatial distribution, mediated by suitable optical media. Here we present a short overview of the emerging photonic applications that rely on such effects.

  1. Single-spin CCD

    NASA Astrophysics Data System (ADS)

    Baart, T. A.; Shafiei, M.; Fujita, T.; Reichl, C.; Wegscheider, W.; Vandersypen, L. M. K.

    2016-04-01

    Spin-based electronics or spintronics relies on the ability to store, transport and manipulate electron spin polarization with great precision. In its ultimate limit, information is stored in the spin state of a single electron, at which point quantum information processing also becomes a possibility. Here, we demonstrate the manipulation, transport and readout of individual electron spins in a linear array of three semiconductor quantum dots. First, we demonstrate single-shot readout of three spins with fidelities of 97% on average, using an approach analogous to the operation of a charge-coupled device (CCD). Next, we perform site-selective control of the three spins, thereby writing the content of each pixel of this ‘single-spin charge-coupled device’. Finally, we show that shuttling an electron back and forth in the array hundreds of times, covering a cumulative distance of 80 μm, has negligible influence on its spin projection. Extrapolating these results to the case of much larger arrays points at a diverse range of potential applications, from quantum information to imaging and sensing.

  2. Nitrogen-source regulation of yeast gamma-glutamyl transpeptidase synthesis involves the regulatory network including the GATA zinc-finger factors Gln3, Nil1/Gat1 and Gzf3.

    PubMed Central

    Springael, Jean-Yves; Penninckx, Michel J

    2003-01-01

    In Saccharomyces cerevisiae, the CIS2 gene encodes gamma-glutamyl transpeptidase (gamma-GT; EC 2.3.2.2), the main GSH-degrading enzyme. The promoter region of CIS2 contains one stress-response element (CCCCT) and eight GAT(T/A)A core sequences, probably involved in nitrogen-regulated transcription. We show in the present study that expression of CIS2 is indeed regulated according to the nature of the nitrogen source. Expression is highest in cells growing on a poor nitrogen source such as urea. Under these conditions, the GATA zinc-finger transcription factors Nil1 and Gln3 are both required for CIS2 expression, Nil1 appearing as the more important factor. We further show that Gzf3, another GATA zinc-finger protein, acts as a negative regulator in nitrogen-source control of CIS2 expression. During growth on a preferred nitrogen source like NH(4)(+), CIS2 expression is repressed through a mechanism involving (at least) the Gln3-binding protein Ure2/GdhCR. Induction of CIS2 expression during nitrogen starvation is dependent on Gln3 and Nil1. Furthermore, rapamycin causes similar CIS2 activation, indicating that the target of rapamycin signalling pathway controls CIS2 expression via Gln3 and Nil1 in nitrogen-starved cells. Finally, our results show that CIS2 expression is induced mainly by nitrogen starvation but apparently not by other types of stress. PMID:12529169

  3. Emergence by Design in Artificial Spin Ice

    NASA Astrophysics Data System (ADS)

    Nisoli, Cristiano; Morrison, Muir; Chern, Gia-Wei; Gilbert, Ian; Zhang, Sheng; Schiffer, Peter

    2015-03-01

    Recently a new perspective has opened in the study of frustration through the creation of artificial frustrated magnetic systems. These materials consist of arrays of lithographically fabricated single-domain ferromagnetic nanostructures that behave like giant Ising spins, whose interactions can be controlled through appropriate choices of their geometric properties and arrangement on a (frustrated) lattice. Higher control, inclusive of genuine thermal ensembles have replaced the earlier and coarser methods based on magnetic agitation. Dynamical versions are now being realized, characterized in real time via PEEM, revealing statistical mechanics in action. This affords implementation of new geometries, not found in nature, for dedicated bottom up design of desired emergent properties. Born as a scientific toy to investigate frustration-by-design, artificial spin ice might now be used to open ``a path into an uncharted territory, a landscape of advanced functional materials in which topological effects on physical properties can be explored and harnessed.''.

  4. Spin-labeled polyribonucleotides.

    PubMed Central

    Petrov, A I; Sukhorukov, B I

    1980-01-01

    Poly (U), poly (C) and poly (A) were spin labeled with N-(2,2,5,5-tetramethyl-3-carbonylpyrroline-1-oxyl)-imidazole. This spin label interacts selectively with 2' OH ribose groups of polynucleotides and does not modify the nucleic acid bases. The extent of spin labeling is not dependent upon the nature of the base and is entirely determined by rigidity of the secondary structure of the polynucleotide. The extent of modification for poly (U), poly (C) and poly (A) was 4.2, 1.7 and 1.5 per cent, respectively, the secondary structure of the polynucleotides being practically unchanged. Some physico-chemical properties of the spin-labeled polynucleotides were investigated by ESR spectroscopy. Rotational correlation times of the spin label and activation energy of its motion were calculated. PMID:6253911

  5. Fractionalized spin-wave continuum in kagome spin liquids

    NASA Astrophysics Data System (ADS)

    Mei, Jia-Wei; Wen, Xiao-Gang

    Motivated by spin-wave continuum (SWC) observed in recent neutron scattering experiments in Herbertsmithite, we use Gutzwiller-projected wave functions to study dynamic spin structure factor S (q , ω) of spin liquid states on the kagome lattice. Spin-1 excited states in spin liquids are represented by Gutzwiller-projected two-spinon excited wave functions. We investigate three different spin liquid candidates, spinon Fermi-surface spin liquid (FSL), Dirac spin liquid (DSL) and random-flux spin liquid (RSL). FSL and RSL have low energy peaks in S (q , ω) at K points in the extended magnetic Brillouin zone, in contrast to experiments where low energy peaks are found at M points. There is no obviuos contradiction between DSL and neutron scattering measurements. Besides a fractionalized spin (i.e. spin-1/2), spinons in DSL carry a fractionalized crystal momentum which is potentially detectable in SWC in the neutron scattering measurements.

  6. Thermal spin filtering, thermal spin switching and negative-differential-resistance in thermal spin currents in zigzag SiC nanoribbons.

    PubMed

    Wu, Dan-Dan; Fu, Hua-Hua; Gu, Lei; Ni, Yun; Zu, Feng-Xia; Yao, Kai-Lun

    2014-09-01

    Spin caloritronics with a combination of spintronics and thermoelectrics has potential applications in future information science and opens a new direction in the development of multi-functional materials. Based on density functional theory and the nonequilibrium Green's function method, we calculate thermal spin-dependent transport through a zigzag silicon carbide nanoribbon (ZSiCNR), which is a heterojunction consisting of a left electrode (ZSiC-2H1H) and right electrode terminated (ZSiC-1H1H) by hydrogen. Our results show that when the temperature in the left contact increases over a critical value, the thermal spin-down current increases remarkably from zero, while the thermal spin-up current remains zero in the total-temperature region, indicating that a perfect thermal spin filter together with a perfect spin switcher is obtained. Furthermore, the thermal spin current shows a negative differential resistance effect and quantum oscillation behaviors. These results suggest that the zigzag SiC nanoribbon proposed by us can be designed as a highly-efficient spin caloritronics device with multiple functionalities.

  7. Synchronization of spin-transfer torque oscillators by spin pumping, inverse spin Hall, and spin Hall effects

    SciTech Connect

    Elyasi, Mehrdad; Bhatia, Charanjit S.; Yang, Hyunsoo

    2015-02-14

    We have proposed a method to synchronize multiple spin-transfer torque oscillators based on spin pumping, inverse spin Hall, and spin Hall effects. The proposed oscillator system consists of a series of nano-magnets in junction with a normal metal with high spin-orbit coupling, and an accumulative feedback loop. We conduct simulations to demonstrate the effect of modulated charge currents in the normal metal due to spin pumping from each nano-magnet. We show that the interplay between the spin Hall effect and inverse spin Hall effect results in synchronization of the nano-magnets.

  8. Electrical creation of spin polarization in silicon at room temperature

    NASA Astrophysics Data System (ADS)

    Jansen, Ron

    2010-03-01

    The integration of magnetism and mainstream semiconductor electronics could impact information technology in ways beyond imagination. A pivotal step is the implementation of spin-based electronic functionality in silicon devices. Much of the interest in silicon derives from its prevalence in semiconductor technology and from the robustness and longevity of spin as it is only weakly coupled to other degrees of freedom in the material. Recently it has become possible to induce and detect spin polarization in otherwise non-magnetic semiconductors (GaAs and Si) using all-electrical structures, but so far at temperatures below 150 K and only in n-type material. The main challenges are: (i) to design fully electrical silicon-based spintronic devices with large spin signals, (ii) to demonstrate device operation at room temperature, (iii) to do so for n-type and p-type material, and (iv) to find ways to manipulate spins and spin flow with a gate electric field. After a brief overview of the state of affairs, our recent advances in these areas are described. In particular, we demonstrate room-temperature electrical injection of spin polarization into n-type and p-type silicon from a ferromagnetic tunnel contact, spin manipulation using the Hanle effect, and the electrical detection of the induced spin accumulation. It is shown that a spin splitting as large as 2.9 meV can be created in Si at room temperature, corresponding to an electron spin polarization of 4.6%. The results open the way to the implementation of spin functionality in complementary silicon devices and electronic circuits operating at ambient temperature, and to the exploration of their prospects as well as the fundamental rules that govern their behavior. [4pt] [1] S.P. Dash, S. Sharma, R.S. Patel, M.P. de Jong and R. Jansen, Nature 462, 491 (2009).

  9. Thermal spin fluctuations in spinor Bose-Einstein condensates

    NASA Astrophysics Data System (ADS)

    Melé-Messeguer, M.; Juliá-Díaz, B.; Polls, A.; Santos, L.

    2013-03-01

    We study the thermal activation of spin fluctuations in dynamically stable spinor Bose-Einstein condensates. We analyze the specific cases of a nondipolar spin-1 condensate in the state m=0, where thermal activation results from spin-changing collisions, and of a chromium condensate in the maximally stretched state m=-3, where thermal spin fluctuations are due to dipole-induced spin relaxation. In both cases, we show that the low energy associated to the spinor physics may be employed for thermometry purposes down to extremely low temperatures, typically impossible to measure in Bose-Einstein condensates with the usual thermometric techniques. Moreover, the peculiar dependence of the system's entropy with the applied Zeeman energy opens a possible route for adiabatic cooling.

  10. Hydrodynamics of Normal Atomic Gases with Spin-orbit Coupling

    PubMed Central

    Hou, Yan-Hua; Yu, Zhenhua

    2015-01-01

    Successful realization of spin-orbit coupling in atomic gases by the NIST scheme opens the prospect of studying the effects of spin-orbit coupling on many-body physics in an unprecedentedly controllable way. Here we derive the linearized hydrodynamic equations for the normal atomic gases of the spin-orbit coupling by the NIST scheme with zero detuning. We show that the hydrodynamics of the system crucially depends on the momentum susceptibilities which can be modified by the spin-orbit coupling. We reveal the effects of the spin-orbit coupling on the sound velocities and the dipole mode frequency of the gases by applying our formalism to the ideal Fermi gas. We also discuss the generalization of our results to other situations. PMID:26483090

  11. Donor-driven spin relaxation in multivalley semiconductors.

    PubMed

    Song, Yang; Chalaev, Oleg; Dery, Hanan

    2014-10-17

    The observed dependence of spin relaxation on the identity of the donor atom in n-type silicon has remained without explanation for decades and poses a long-standing open question with important consequences for modern spintronics. Taking into account the multivalley nature of the conduction band in silicon and germanium, we show that the spin-flip amplitude is dominated by short-range scattering off the central-cell potential of impurities after which the electron is transferred to a valley on a different axis in k space. Through symmetry arguments, we show that this spin-flip process can strongly affect the spin relaxation in all multivalley materials in which time-reversal cannot connect distinct valleys. From the physical insights gained from the theory, we provide guidelines to significantly enhance the spin lifetime in semiconductor spintronics devices. PMID:25361275

  12. NV electronic spin coherence time approaching one second

    NASA Astrophysics Data System (ADS)

    Pham, Linh; Bar-Gill, Nir; Jarmola, Andrey; Budker, Dmitry; Walsworth, Ronald

    2013-05-01

    We demonstrate an improvement of more than two orders of magnitude in the spin coherence time (T2) of NV centers compared to previous measurements: T2 ~ 0.5 s at 77K. By employing dynamical decoupling pulse sequences to suppress NV spin decoherence due to magnetic noise, we found that T2 is limited to approximately half of the longitudinal spin relaxation time (T1) over a wide range of temperatures, which we attribute to phonon-induced decoherence. Our results apply to ensembles of NV spins and do not depend on the optimal choice of a specific NV, which could advance quantum sensing, enable squeezing and many-body entanglement in solid-state spin ensembles, and open a path to simulating a wide range of driven, interaction-dominated quantum many-body Hamiltonians.

  13. Active control of magnetoresistance of organic spin valves using ferroelectricity

    PubMed Central

    Sun, Dali; Fang, Mei; Xu, Xiaoshan; Jiang, Lu; Guo, Hangwen; Wang, Yanmei; Yang, Wenting; Yin, Lifeng; Snijders, Paul C.; Ward, T. Z.; Gai, Zheng; Zhang, X.-G.; Lee, Ho Nyung; Shen, Jian

    2014-01-01

    Organic spintronic devices have been appealing because of the long spin lifetime of the charge carriers in the organic materials and their low cost, flexibility and chemical diversity. In previous studies, the control of resistance of organic spin valves is generally achieved by the alignment of the magnetization directions of the two ferromagnetic electrodes, generating magnetoresistance. Here we employ a new knob to tune the resistance of organic spin valves by adding a thin ferroelectric interfacial layer between the ferromagnetic electrode and the organic spacer: the magnetoresistance of the spin valve depends strongly on the history of the bias voltage, which is correlated with the polarization of the ferroelectric layer; the magnetoresistance even changes sign when the electric polarization of the ferroelectric layer is reversed. These findings enable active control of resistance using both electric and magnetic fields, opening up possibility for multi-state organic spin valves. PMID:25008155

  14. Foucault's pendulum, a classical analog for the electron spin state

    NASA Astrophysics Data System (ADS)

    Linck, Rebecca A.

    Spin has long been regarded as a fundamentally quantum phenomena that is incapable of being described classically. To bridge the gap and show that aspects of spin's quantum nature can be described classically, this work uses a classical Lagrangian based on the coupled oscillations of Foucault's pendulum as an analog for the electron spin state in an external magnetic field. With this analog it is possible to demonstrate that Foucault's pendulum not only serves as a basis for explaining geometric phase, but is also a basis for reproducing a broad range of behavior from Zeeman-like frequency splitting to precession of the spin state. By demonstrating that unmeasured electron spin states can be fully described in classical terms, this research opens the door to using the tools of classical physics to examine an inherently quantum phenomenon.

  15. Active control of magnetoresistance of organic spin valves using ferroelectricity.

    PubMed

    Sun, Dali; Fang, Mei; Xu, Xiaoshan; Jiang, Lu; Guo, Hangwen; Wang, Yanmei; Yang, Wenting; Yin, Lifeng; Snijders, Paul C; Ward, T Z; Gai, Zheng; Zhang, X-G; Lee, Ho Nyung; Shen, Jian

    2014-01-01

    Organic spintronic devices have been appealing because of the long spin lifetime of the charge carriers in the organic materials and their low cost, flexibility and chemical diversity. In previous studies, the control of resistance of organic spin valves is generally achieved by the alignment of the magnetization directions of the two ferromagnetic electrodes, generating magnetoresistance. Here we employ a new knob to tune the resistance of organic spin valves by adding a thin ferroelectric interfacial layer between the ferromagnetic electrode and the organic spacer: the magnetoresistance of the spin valve depends strongly on the history of the bias voltage, which is correlated with the polarization of the ferroelectric layer; the magnetoresistance even changes sign when the electric polarization of the ferroelectric layer is reversed. These findings enable active control of resistance using both electric and magnetic fields, opening up possibility for multi-state organic spin valves. PMID:25008155

  16. Active control of magnetoresistance of organic spin valves using ferroelectricity

    NASA Astrophysics Data System (ADS)

    Shen, Jian

    Organic spintronic devices have been appealing because of the long spin lifetime of the charge carriers in the organic materials and their low cost, flexibility and chemical diversity. In previous studies, the control of resistance of organic spin valves is generally achieved by the alignment of the magnetization directions of the two ferromagnetic electrodes, generating magnetoresistance. Here we employ a new knob to tune the resistance of organic spin valves by adding a thin ferroelectric interfacial layer between the ferromagnetic electrode and the organic spacer: the magnetoresistance of the spin valve depends strongly on the history of the bias voltage, which is correlated with the polarization of the ferroelectric layer; the magnetoresistance even changes sign when the electric polarization of the ferroelectric layer is reversed. These findings enable active control of resistance using both electric and magnetic fields, opening up possibility for multi-state organic spin valves.

  17. Donor-driven spin relaxation in multivalley semiconductors.

    PubMed

    Song, Yang; Chalaev, Oleg; Dery, Hanan

    2014-10-17

    The observed dependence of spin relaxation on the identity of the donor atom in n-type silicon has remained without explanation for decades and poses a long-standing open question with important consequences for modern spintronics. Taking into account the multivalley nature of the conduction band in silicon and germanium, we show that the spin-flip amplitude is dominated by short-range scattering off the central-cell potential of impurities after which the electron is transferred to a valley on a different axis in k space. Through symmetry arguments, we show that this spin-flip process can strongly affect the spin relaxation in all multivalley materials in which time-reversal cannot connect distinct valleys. From the physical insights gained from the theory, we provide guidelines to significantly enhance the spin lifetime in semiconductor spintronics devices.

  18. Intrastrand cross-linked actin between Gln-41 and Cys-374. I. Mapping of sites cross-linked in F-actin by N-(4-azido-2-nitrophenyl) putrescine.

    PubMed

    Hegyi, G; Mák, M; Kim, E; Elzinga, M; Muhlrad, A; Reisler, E

    1998-12-22

    A new heterobifunctional photo-cross-linking reagent, N-(4-azido-2-nitrophenyl)-putrescine (ANP), was synthesized and covalently bound to Gln-41 of rabbit skeletal muscle actin by a bacterial transglutaminase-mediated reaction. Up to 1.0 mol of the reagent was incorporated per mole of G-actin; at least 90% of it was bound to Gln-41 while a minor fraction (about 8%) was attached to Gln-59. The labeled G-actin was polymerized, and the resulting F-actin was intermolecularly cross-linked by irradiation with UV light. The labeled and cross-linked peptides were isolated from either a complete or limited tryptic digest of cross-linked actin. In the limited digest the tryptic cleavage was restricted to arginine by succinylation of the lysyl residues. N-terminal sequencing and mass spectrometry indicated that the cross-linked peptides contained residues 40-50 (or 40-62 in the arginine limited digest) and residues 373-375, and that the actual cross-linking took place between Gln-41 and Cys-374. This latter finding was also supported by the inhibition of Cys-374 labeling with a fluorescent probe in the cross-linked actin. The dynamic length of ANP, between 11.1 and 12.5 A, constrains to that range the distance between the gamma-carboxyl group of Gln-41 in one monomer and the sulfur atom of Cys-374 in an adjacent monomer. This is consistent with the distances between these two residues on adjacent monomers of the same strand in the long-pitch helix in the structural models of F-actin [Holmes, K. C., Popp, D., Gebhard, W., and Kabsch, W. (1990) Nature 347, 44-49 and Lorenz, M., Popp, D., and Holmes, K. C. (1993) J. Mol. Biol. 234, 826-836]. The effect of cross-linking on the function of actin is described in the companion papers. PMID:9922144

  19. Ghost spins and quantum critical behavior in a spin chain with local bond deformation

    NASA Astrophysics Data System (ADS)

    Dai, Jianhui; Wang, Yupeng; Eckern, U.

    1999-09-01

    We study the impurity-induced critical behavior in an integrable SU(2)-invariant model consisting of an open spin chain of arbitrary spin S (Takhatajian-Babujian model) interacting with an impurity of spin S-->' located at one of the boundaries. For S=1/2 or S'=1/2, the impurity interaction takes a very simple form JS-->1.S-->' that describes the deformed boundary bond between the impurity S-->' and the first bulk spin S-->1 with an arbitrary coupling strength J. For a weak coupling 0S, and S'=J0/[(S+S')2-1/4], the impurity spin is split into two ghost spins. Their cooperative effect leads to a variety of new critical behaviors with different values of \\|S'-S\\|.

  20. Real-time observation of Snell’s law for spin waves in thin ferromagnetic films

    NASA Astrophysics Data System (ADS)

    Tanabe, Kenji; Matsumoto, Ryo; Ohe, Jun-ichiro; Murakami, Shuichi; Moriyama, Takahiro; Chiba, Daichi; Kobayashi, Kensuke; Ono, Teruo

    2014-05-01

    We report the real-time observation of spin-wave propagation across a step inserted between two ferromagnetic films with different thicknesses. Because the dispersion relation of the spin wave depends on the thickness of the film, the step works as a junction to affect the spin wave propagation. When the spin wave transmits through the junction, the wavenumber undergoes modulation as per Snell’s law, which states that the refraction index is proportional to the wavenumber. From the viewpoint of magnonics, the present achievement opens up new possibilities of controlling the wavenumber of spin waves.

  1. Predicted signatures of the intrinsic spin Hall effect in closed systems.

    PubMed

    Valín-Rodríguez, Manuel

    2011-12-23

    We study a two-dimensional electron system in the presence of spin-orbit interaction. It is shown analytically that the spin-orbit interaction acts as a transversal effective electric field, whose orientation depends on the sign of the z-axis spin projection. This effect does not require any driving electrical field and is inherent to the spin-orbit interactions present in semiconductor materials. Therefore, it should manifest in both closed and open systems. An experiment is proposed to observe the intrinsic spin Hall effect in the far infrared absorption of an asymmetric semiconductor nanostructure.

  2. Control of the spin to charge conversion using the inverse Rashba-Edelstein effect

    SciTech Connect

    Sangiao, S.; De Teresa, J. M.; Morellon, L.; Martinez-Velarte, M. C.; Lucas, I.; Viret, M.

    2015-04-27

    We show here that using spin orbit coupling interactions at a metallic interface it is possible to control the sign of the spin to charge conversion in a spin pumping experiment. Using the intrinsic symmetry of the “Inverse Rashba Edelstein Effect” (IREE) in a Bi/Ag interface, the charge current changes sign when reversing the order of the Ag and Bi stacking. This confirms the IREE nature of the conversion of spin into charge in these interfaces and opens the way to tailoring the spin sensing voltage by an appropriate trilayer sequence.

  3. Anisotropic spin relaxation in graphene.

    PubMed

    Tombros, N; Tanabe, S; Veligura, A; Jozsa, C; Popinciuc, M; Jonkman, H T; van Wees, B J

    2008-07-25

    Spin relaxation in graphene is investigated in electrical graphene spin valve devices in the nonlocal geometry. Ferromagnetic electrodes with in-plane magnetizations inject spins parallel to the graphene layer. They are subject to Hanle spin precession under a magnetic field B applied perpendicular to the graphene layer. Fields above 1.5 T force the magnetization direction of the ferromagnetic contacts to align to the field, allowing injection of spins perpendicular to the graphene plane. A comparison of the spin signals at B=0 and B=2 T shows a 20% decrease in spin relaxation time for spins perpendicular to the graphene layer compared to spins parallel to the layer. We analyze the results in terms of the different strengths of the spin-orbit effective fields in the in-plane and out-of-plane directions and discuss the role of the Elliott-Yafet and Dyakonov-Perel mechanisms for spin relaxation. PMID:18764351

  4. Spin-orbit coupling and quantum spin Hall effect for neutral atoms without spin flips.

    PubMed

    Kennedy, Colin J; Siviloglou, Georgios A; Miyake, Hirokazu; Burton, William Cody; Ketterle, Wolfgang

    2013-11-27

    We propose a scheme which realizes spin-orbit coupling and the quantum spin Hall effect for neutral atoms in optical lattices without relying on near resonant laser light to couple different spin states. The spin-orbit coupling is created by modifying the motion of atoms in a spin-dependent way by laser recoil. The spin selectivity is provided by Zeeman shifts created with a magnetic field gradient. Alternatively, a quantum spin Hall Hamiltonian can be created by all-optical means using a period-tripling, spin-dependent superlattice. PMID:24329453

  5. Interfacial spin-filter assisted spin transfer torque effect in Co/BeO/Co magnetic tunnel junction

    SciTech Connect

    Tang, Y.-H. Chu, F.-C.

    2015-03-07

    The first-principles calculation is employed to demonstrate the spin-selective transport properties and the non-collinear spin-transfer torque (STT) effect in the newly proposed Co/BeO/Co magnetic tunnel junction. The subtle spin-polarized charge transfer solely at O/Co interface gives rise to the interfacial spin-filter (ISF) effect, which can be simulated within the tight binding model to verify the general expression of STT. This allows us to predict the asymmetric bias behavior of non-collinear STT directly via the interplay between the first-principles calculated spin current densities in collinear magnetic configurations. We believe that the ISF effect, introduced by the combination between wurtzite-BeO barrier and the fcc-Co electrode, may open a new and promising route in semiconductor-based spintronics applications.

  6. Realizing dipolar spin models with arrays of superconducting qubits

    NASA Astrophysics Data System (ADS)

    Dalmonte, M.; Mirzaei, S. I.; Muppalla, P. R.; Marcos, D.; Zoller, P.; Kirchmair, G.

    2015-11-01

    We propose a platform for quantum many body simulations of dipolar spin models using current circuit QED technology. Our basic building blocks are 3D transmon qubits where we use the naturally occurring dipolar interactions to realize interacting spin systems. This opens the way toward the realization of a broad class of tunable spin models in both two- and one-dimensional geometries. We illustrate the potential offered by these systems in the context of dimerized Majumdar-Ghosh-type phases, archetypical examples of quantum magnetism, showing how such phases are robust against disorder and decoherence and could be observed within state-of-the-art experiments.

  7. Foucault's Pendulum, Analog for an Electron Spin State

    NASA Astrophysics Data System (ADS)

    Linck, Rebecca

    2012-11-01

    The classical Lagrangian that describes the coupled oscillations of Foucault's pendulum presents an interesting analog to an electron's spin state in an external magnetic field. With a simple modification, this classical Lagrangian yields equations of motion that directly map onto the Schrodinger-Pauli Equation. This analog goes well beyond the geometric phase, reproducing a broad range of behavior from Zeeman-like frequency splitting to precession of the spin state. By demonstrating that unmeasured spin states can be fully described in classical terms, this research opens the door to using the tools of classical physics to examine an inherently quantum phenomenon.

  8. Inverse spin Hall effect in a closed loop circuit

    SciTech Connect

    Omori, Y.; Auvray, F.; Wakamura, T.; Niimi, Y.; Fert, A.

    2014-06-16

    We present measurements of inverse spin Hall effects (ISHEs), in which the conversion of a spin current into a charge current via the ISHE is detected not as a voltage in a standard open circuit but directly as the charge current generated in a closed loop. The method is applied to the ISHEs of Bi-doped Cu and Pt. The derived expression of ISHE for the loop structure can relate the charge current flowing into the loop to the spin Hall angle of the SHE material and the resistance of the loop.

  9. Rotational bands terminating at maximal spin in the valence space

    SciTech Connect

    Ragnarsson, I.; Afanasjev, A.V.

    1996-12-31

    For nuclei with mass A {le} 120, the spin available in {open_quotes}normal deformation configurations{close_quotes} is experimentally accessible with present detector systems. Of special interest are the nuclei which show collective features at low or medium-high spin and where the corresponding rotational bands with increasing spin can be followed in a continuous way to or close to a non-collective terminating state. Some specific features in this context are discussed for nuclei in the A = 80 region and for {sup 117,118}Xe.

  10. Towards a Compositional SPIN

    NASA Technical Reports Server (NTRS)

    Pasareanu, Corina S.; Giannakopoulou, Dimitra

    2006-01-01

    This paper discusses our initial experience with introducing automated assume-guarantee verification based on learning in the SPIN tool. We believe that compositional verification techniques such as assume-guarantee reasoning could complement the state-reduction techniques that SPIN already supports, thus increasing the size of systems that SPIN can handle. We present a "light-weight" approach to evaluating the benefits of learning-based assume-guarantee reasoning in the context of SPIN: we turn our previous implementation of learning for the LTSA tool into a main program that externally invokes SPIN to provide the model checking-related answers. Despite its performance overheads (which mandate a future implementation within SPIN itself), this approach provides accurate information about the savings in memory. We have experimented with several versions of learning-based assume guarantee reasoning, including a novel heuristic introduced here for generating component assumptions when their environment is unavailable. We illustrate the benefits of learning-based assume-guarantee reasoning in SPIN through the example of a resource arbiter for a spacecraft. Keywords: assume-guarantee reasoning, model checking, learning.

  11. Resonant Tunneling Spin Pump

    NASA Technical Reports Server (NTRS)

    Ting, David Z.

    2007-01-01

    The resonant tunneling spin pump is a proposed semiconductor device that would generate spin-polarized electron currents. The resonant tunneling spin pump would be a purely electrical device in the sense that it would not contain any magnetic material and would not rely on an applied magnetic field. Also, unlike prior sources of spin-polarized electron currents, the proposed device would not depend on a source of circularly polarized light. The proposed semiconductor electron-spin filters would exploit the Rashba effect, which can induce energy splitting in what would otherwise be degenerate quantum states, caused by a spin-orbit interaction in conjunction with a structural-inversion asymmetry in the presence of interfacial electric fields in a semiconductor heterostructure. The magnitude of the energy split is proportional to the electron wave number. Theoretical studies have suggested the possibility of devices in which electron energy states would be split by the Rashba effect and spin-polarized currents would be extracted by resonant quantum-mechanical tunneling.

  12. Higher spins and holography

    NASA Astrophysics Data System (ADS)

    Kraus, Per; Ross, Simon F.

    2013-05-01

    The principles of quantum mechanics and relativity impose rigid constraints on theories of massless particles with nonzero spin. Indeed, Yang-Mills theory and General Relativity are the unique solution in the case of spin-1 and spin-2. In asymptotically flat spacetime, there are fundamental obstacles to formulating fully consistent interacting theories of particles of spin greater than 2. However, indications are that such theories are just barely possible in asymptotically anti-de Sitter or de Sitter spacetimes, where the non-existence of an S-matrix provides an escape from the theorems restricting theories in Minkowski spacetime. These higher spin gravity theories are therefore of great intrinsic interest, since they, along with supergravity, provide the only known field theories generalizing the local invariance principles of Yang-Mills theory and General Relativity. While work on higher spin gravity goes back several decades, the subject has gained broader appeal in recent years due to its appearance in the AdS/CFT correspondence. In three and four spacetime dimensions, there exist duality proposals linking higher spin gravity theories to specific conformal field theories living in two and three dimensions respectively. The enlarged symmetry algebra of the conformal field theories renders them exactly soluble, which makes them excellent laboratories for understanding in detail the holographic mechanism behind AdS/CFT duality. Steady progress is also being made on better understanding the space of possible higher spin gravity theories and their physical content. This work includes classifying the possible field multiplets and their interactions, constructing exact solutions of the nonlinear field equations, and relating higher spin theories to string theory. A full understanding of these theories will involve coming to grips with the novel symmetry principles that enlarge those of General Relativity and Yang-Mills theory, and one can hope that this will provide

  13. The role of base excision repair in the development of primary open angle glaucoma in the Polish population.

    PubMed

    Cuchra, Magda; Markiewicz, Lukasz; Mucha, Bartosz; Pytel, Dariusz; Szymanek, Katarzyna; Szemraj, Janusz; Szaflik, Jerzy; Szaflik, Jacek P; Majsterek, Ireneusz

    2015-08-01

    Glaucoma is a leading cause of irreversible blindness in developing countries. Previous data have shown that progressive loss of human TM cells may be connected with chronic exposure to oxidative stress. This hypothesis may suggest a role of the base excision repair (BER) pathway of oxidative DNA damage in primary open angle glaucoma (POAG) patients. The aim of our study was to evaluate an association of BER gene polymorphism with a risk of POAG. Moreover, an association of clinical parameters was examined including cup disk ratio (c/d), rim area (RA) and retinal nerve fiber layer (RNFL) with glaucoma progression according to BER gene polymorphisms. Our research included 412 patients with POAG and 454 healthy controls. Gene polymorphisms were analyzed by PCR-RFLP. Heidelberg Retinal Tomography (HRT) clinical parameters were also analyzed. The 399 Arg/Gln genotype of the XRCC1 gene (OR 1.38; 95% CI 1.02-1.89 p = 0.03) was associated with an increased risk of POAG occurrence. It was indicated that the 399 Gln/Gln XRCC1 genotype might increase the risk of POAG progression according to the c/d ratio (OR 1.67; 95% CI 1.07-2.61 P = 0.02) clinical parameter. Moreover, the association of VF factor with 148 Asp/Glu of APE1 genotype distribution and POAG progression (OR 2.25; 95% CI 1.30-3.89) was also found. Additionally, the analysis of the 324 Gln/His MUTYH polymorphism gene distribution in the patient group according to RNFL factor showed that it might decrease the progression of POAG (OR 0.47; 95% CI 0.30-0.82 P = 0.005). We suggest that the 399 Arg/Gln polymorphism of the XRCC1 gene may serve as a predictive risk factor of POAG.

  14. Spin models and boson sampling

    NASA Astrophysics Data System (ADS)

    Garcia Ripoll, Juan Jose; Peropadre, Borja; Aspuru-Guzik, Alan

    Aaronson & Arkhipov showed that predicting the measurement statistics of random linear optics circuits (i.e. boson sampling) is a classically hard problem for highly non-classical input states. A typical boson-sampling circuit requires N single photon emitters and M photodetectors, and it is a natural idea to rely on few-level systems for both tasks. Indeed, we show that 2M two-level emitters at the input and output ports of a general M-port interferometer interact via an XY-model with collective dissipation and a large number of dark states that could be used for quantum information storage. More important is the fact that, when we neglect dissipation, the resulting long-range XY spin-spin interaction is equivalent to boson sampling under the same conditions that make boson sampling efficient. This allows efficient implementations of boson sampling using quantum simulators & quantum computers. We acknowledge support from Spanish Mineco Project FIS2012-33022, CAM Research Network QUITEMAD+ and EU FP7 FET-Open Project PROMISCE.

  15. SPINning parallel systems software.

    SciTech Connect

    Matlin, O.S.; Lusk, E.; McCune, W.

    2002-03-15

    We describe our experiences in using Spin to verify parts of the Multi Purpose Daemon (MPD) parallel process management system. MPD is a distributed collection of processes connected by Unix network sockets. MPD is dynamic processes and connections among them are created and destroyed as MPD is initialized, runs user processes, recovers from faults, and terminates. This dynamic nature is easily expressible in the Spin/Promela framework but poses performance and scalability challenges. We present here the results of expressing some of the parallel algorithms of MPD and executing both simulation and verification runs with Spin.

  16. Quantum spin Hall effect.

    PubMed

    Bernevig, B Andrei; Zhang, Shou-Cheng

    2006-03-17

    The quantum Hall liquid is a novel state of matter with profound emergent properties such as fractional charge and statistics. The existence of the quantum Hall effect requires breaking of the time reversal symmetry caused by an external magnetic field. In this work, we predict a quantized spin Hall effect in the absence of any magnetic field, where the intrinsic spin Hall conductance is quantized in units of 2(e/4pi). The degenerate quantum Landau levels are created by the spin-orbit coupling in conventional semiconductors in the presence of a strain gradient. This new state of matter has many profound correlated properties described by a topological field theory.

  17. Quantum Spin Hall Effect

    SciTech Connect

    Bernevig, B.Andrei; Zhang, Shou-Cheng; /Stanford U., Phys. Dept.

    2010-01-15

    The quantum Hall liquid is a novel state of matter with profound emergent properties such as fractional charge and statistics. Existence of the quantum Hall effect requires breaking of the time reversal symmetry caused by an external magnetic field. In this work, we predict a quantized spin Hall effect in the absence of any magnetic field, where the intrinsic spin Hall conductance is quantized in units of 2 e/4{pi}. The degenerate quantum Landau levels are created by the spin-orbit coupling in conventional semiconductors in the presence of a strain gradient. This new state of matter has many profound correlated properties described by a topological field theory.

  18. Spin tracking in RHIC

    SciTech Connect

    Luccio, A.U.; Katayama, T.; Wu, H.

    1997-07-01

    In the acceleration of polarized protons in RHIC many spin depolarizing resonances are encountered. Helical Siberian snakes will be used to overcome depolarizing effects. The behavior of polarization can be studied by numerical tracking in a model accelerator. That allows one to check the strength of the resonances, to study the effect of snakes, to find safe lattice tune regions, and finally to study the operation of special devices like spin flippers. In this paper the authors describe numerical spin tracking. Results show that, for the design corrected distorted orbit and the design beam emittance, the polarization of the beam will be preserved in the whole range of proton energies in RHIC.

  19. Realization of an all-electric spin transistor using quantum point contacts

    NASA Astrophysics Data System (ADS)

    Chen, Tse-Ming; Chuang, Pojen; Ho, Sheng-Chin; Smith, Luke; Sfigakis, Francois; Pepper, Michael; Chen, Chin-Hung; Fan, Ju-Chun; Griffiths, Jonathan; Farrer, Ian; Beere, Harvey; Jones, Geb; Ritchie, Dave

    The spin field effect transistor envisioned by Datta and Das opens a gateway to spin information processing. Although the coherent manipulation of electron spins in semiconductors is now possible, the realization of a functional spin field effect transistor for information processing has yet to be achieved, owing to several fundamental challenges such as the low spin-injection efficiency due to resistance mismatch, spin relaxation, and the spread of spin precession angles. Alternative spin transistor designs have therefore been proposed, but these differ from the field effect transistor concept and require the use of optical or magnetic elements, which pose difficulties for the incorporation into integrated circuits. Here, we present an all-electric all-semiconductor spin field effect transistor, in which these obstacles are overcome by employing two quantum point contacts as spin injectors and detectors. Distinct engineering architectures of spin-orbit coupling are exploited for the quantum point contacts and the central semiconductor channel to achieve complete control of the electron spins--spin injection, manipulation, and detection--in a purely electrical manner. Such a device is compatible with large-scale integration and hold promise for future spintronic devices for information processing. Ref: P. Chuang et al., Nat. Nanotechnol. 10, 35 (2015).

  20. Spin pumping and inverse spin Hall effects—Insights for future spin-orbitronics (invited)

    SciTech Connect

    Zhang, Wei Jungfleisch, Matthias B.; Jiang, Wanjun; Fradin, Frank Y.; Pearson, John E.; Hoffmann, Axel; Sklenar, Joseph; Ketterson, John B.

    2015-05-07

    Quantification of spin-charge interconversion has become increasingly important in the fast-developing field of spin-orbitronics. Pure spin current generated by spin pumping acts as a sensitive probe for many bulk and interface spin-orbit effects, which has been indispensable for the discovery of many promising new spin-orbit materials. We apply spin pumping and inverse spin Hall effect experiments, as a useful metrology, and study spin-orbit effects in a variety of metals and metal interfaces. We quantify the spin Hall effects in Ir and W using the conventional bilayer structures and discuss the self-induced voltage in a single layer of ferromagnetic permalloy. Finally, we extend our discussions to multilayer structures and quantitatively reveal the spin current flow in two consecutive normal metal layers.

  1. Spin waves in a persistent spin-current Fermi liquid

    SciTech Connect

    Feldmann, J. D.; Bedell, K. S.

    2010-06-15

    We report two theoretical results for transverse spin waves, which arise in a system with a persistent spin current. Using Fermi liquid theory, we introduce a spin current in the ground state of a polarized or unpolarized Fermi liquid, and we derive the resultant spin waves using the Landau kinetic equation. The resulting spin waves have a q{sup 1} and q{sup 1/2} dispersion to leading order for the polarized and unpolarized systems, respectively.

  2. Spin transfer torques in the nonlocal lateral spin valve.

    PubMed

    Xu, Yuan; Xia, Ke; Ma, Zhongshui

    2008-06-11

    We report a theoretical study on the spin and electron transport in the nonlocal lateral spin valve with a non-collinear magnetic configuration. The nonlocal magnetoresistance, defined as the voltage difference on the detection lead over the injected current, is derived analytically. The spin transfer torques on the detection lead are calculated. It is found that spin transfer torques are symmetrical for parallel and antiparallel magnetic configurations, in contrast to that in a conventional sandwiched spin valve. PMID:21825793

  3. Microscopic studies of nonlocal spin dynamics and spin transport (invited)

    SciTech Connect

    Adur, Rohan; Du, Chunhui; Cardellino, Jeremy; Scozzaro, Nicolas; Wolfe, Christopher S.; Wang, Hailong; Herman, Michael; Bhallamudi, Vidya P.; Pelekhov, Denis V.; Yang, Fengyuan; Hammel, P. Chris

    2015-05-07

    Understanding the behavior of spins coupling across interfaces in the study of spin current generation and transport is a fundamental challenge that is important for spintronics applications. The transfer of spin angular momentum from a ferromagnet into an adjacent normal material as a consequence of the precession of the magnetization of the ferromagnet is a process known as spin pumping. We find that, in certain circumstances, the insertion of an intervening normal metal can enhance spin pumping between an excited ferromagnetic magnetization and a normal metal layer as a consequence of improved spin conductance matching. We have studied this using inverse spin Hall effect and enhanced damping measurements. Scanned probe magnetic resonance techniques are a complementary tool in this context offering high resolution magnetic resonance imaging, localized spin excitation, and direct measurement of spin lifetimes or damping. Localized magnetic resonance studies of size-dependent spin dynamics in the absence of lithographic confinement in both ferromagnets and paramagnets reveal the close relationship between spin transport and spin lifetime at microscopic length scales. Finally, detection of ferromagnetic resonance of a ferromagnetic film using the photoluminescence of nitrogen vacancy spins in neighboring nanodiamonds demonstrates long-range spin transport between insulating materials, indicating the complexity and generality of spin transport in diverse, spatially separated, material systems.

  4. Pluto's Spinning Moons

    NASA Video Gallery

    Most inner moons in the solar system keep one face pointed toward their central planet; this animation shows that certainly isn’t the case with the small moons of Pluto, which behave like spinning ...

  5. MMS Spin Test

    NASA Video Gallery

    The four Magnetospheric Multiscale observatories all undergo what's called a spin test, to learn how well the spacecraft are balanced. It also provides information on how well the mass properties o...

  6. The spin deep within

    SciTech Connect

    Stackhouse, S.

    2008-10-08

    The electronic configuration of iron impurities in lower-mantle minerals influences their physical properties, but it is not well constrained. New studies suggest that ferrous iron in silicate phases exists mainly in an intermediate spin state.

  7. Optical detection of spin Hall effect in metals

    SciTech Connect

    Erve, O. M. J. van ‘t Hanbicki, A. T.; McCreary, K. M.; Li, C. H.; Jonker, B. T.

    2014-04-28

    Optical techniques have been widely used to probe the spin Hall effect in semiconductors. In metals, however, only electrical methods such as nonlocal spin valve transport, ferromagnetic resonance, or spin torque transfer experiments have been successful. These methods require complex processing techniques and measuring setups. We show here that the spin Hall effect can be observed in non-magnetic metals such as Pt and β-W, using a standard bench top magneto-optical Kerr system with very little sample preparation. Applying a square wave current and using Fourier analysis significantly improve our detection level. One can readily determine the angular dependence of the induced polarization on the bias current direction (very difficult to do with voltage detection), the orientation of the spin Hall induced polarization, and the sign of the spin Hall angle. This optical approach is free from the complications of various resistive effects, which can compromise voltage measurements. This opens up the study of spin Hall effect in metals to a variety of spin dynamic and spatial imaging experiments.

  8. Itinerant spin ice

    NASA Astrophysics Data System (ADS)

    Udagawa, Masafumi

    2014-03-01

    Spin ice is a prototypical frustrated magnet defined on a pyrochlore lattice. The ground state of spin ice is described by a simple rule called ``ice rule'': out of four spins on a tetrahedron, two spins point inward, while the other two outward. This simple rule is not sufficient to determine the spin configuration uniquely, but it leaves macroscopic degeneracy in the ground state. Despite the macroscopic degeneracy, however, the ground state is not completely disordered, but it exhibits algebraic spatial correlation, which characterizes this state as ``Coulomb phase'' where various exotic properties, such as monopole excitations and unusual magnetic responses are observed. Given the peculiar spatial correlation, it is interesting to ask what happens if itinerant electrons coexist and interact with spin ice. Indeed, this setting is relevant to several metallic Ir pyrochlore oxides, such as Ln2Ir2O7 (Ln=Pr, Nd), where Ir 5d itinerant electrons interact with Ln 4f localized moments. In these compounds, anomalous transport phenomena have been reported, such as non-monotonic magnetic field dependence of Hall conductivity and low-temperature resistivity upturn. To address these issues, we adopt a spin-ice-type Ising Kondo lattice model on a pyrochlore lattice, and solve this model by applying the cluster dynamical mean-field theory and the perturbation expansion in terms of the spin-electron coupling. As a result, we found that (i) the resistivity shows a minimum at a characteristic temperature below which spin ice correlation sets in. Moreover, (ii) the Hall conductivity shows anisotropic and non-monotonic magnetic field dependence due to the scattering from the spatially extended spin scalar chirality incorporated in spin ice manifold. These results give unified understanding to the thermodynamic and transport properties of Ln2Ir2O7 (Ln=Pr, Nd), and give new insights into the role of geometrical frustration in itinerant systems. This work has been done in

  9. Spider Spinning for Dummies

    NASA Astrophysics Data System (ADS)

    Bird, Richard S.

    Spider spinning is a snappy name for the problem of listing the ideals of a totally acyclic poset in such a way that each ideal is computed from its predecessor in constant time. Such an algorithm is said to be loopless. Our aim in these lectures is to show how to calculate a loopless algorithm for spider spinning. The calculation makes use of the fundamental laws of functional programming and the real purpose of the exercise is to show these laws in action.

  10. Spin transport in nanoscale spin valves and magnetic tunnel junctions

    NASA Astrophysics Data System (ADS)

    Patibandla, Sridhar

    Spintronics or electronics that utilizes the spin degree of freedom of a single charge carrier (or an ensemble of charge carriers) to store, process, sense or communicate data and information is a rapidly burgeoning field in electronics. In spintronic devices, information is encoded in the spin polarization of a single carrier (or multiple carriers) and the spin(s) of these carrier(s) are manipulated for device operation. This strategy could lead to devices with low power consumption. This dissertation investigates spin transport in one dimensional and two dimensional semiconductors, with a view to applications in spintronic devices. This dissertation is arranged as follows: Chapter 1 gives a detailed introduction and necessary background to understand aspects of spin injection into a semiconductor from a spin polarized source such as a ferromagnet, and spin polarized electron transport in the semiconductor. Chapter 2 discusses the nanoporous alumina technique that is employed to fabricate nanowires and nanowire spin valves for the investigation of spin transport in 1D semiconductors. Chapter 3 investigates the spin transport in quasi one-dimensional spin valves with germanium spacer layer. These spin valves with 50nm in diameter and 1 mum length were fabricated using the porous alumina technique. Spin transport in nanoscale germanium spin valves was demonstrated and the spin relaxation lengths and the spin relaxation times were calculated. Chapter 4 discusses spin transport studies conducted in bulk high purity germanium with a view to comparing spin relaxation mechanisms in low mobility nanowires and high mobility bulk structures. Lateral spin valve with tunnel injectors were employed in this study and the spin transport measurements were conducted at various temperatures. The spin relaxation rates were measured as a function of temperature which allowed us to distinguish between two different mechanisms---D'yakonov-Perel' and Elliott-Yafet---that dominate spin

  11. Higher-spin theory and holography

    NASA Astrophysics Data System (ADS)

    Gaberdiel, Matthias; Vasiliev, Mikhail

    2013-05-01

    , this has triggered a significant amount of activity in this general area. Among other things, the constraints that are implied by the higher-spin symmetries were analysed (see the paper by Maldacena and Zhiboedov in this issue [9]), and a fairly concrete proposal for how higher-spin theories are related to string theory was made (see the paper by Chang, Minwalla, Sharma and Yin in this issue [10]). Furthermore, a lower dimensional version of the conjecture was put forward by Gaberdiel and Gopakumar [11] that was subsequently also checked in some detail. These dualities hold the promise of offering insights into the inner workings of the AdS/CFT correspondence since they are complex enough to capture the essence of the duality, while at the same time being sufficiently simple in order to allow for a detailed analysis. Moreover, the methods specifically developed in higher-spin theory may be useful for understanding a general mechanism underlying holography, both in higher-spin models and beyond (see the paper by Vasiliev in this issue [12]). Another fascinating aspect of these higher-spin theories lies in the fact that the higher-spin symmetries mix generically fields of different spin, and in particular, the spin-2 metric and higher-spin excitations are related to one another by gauge transformations. As a result, higher-spin theories require a modification of the standard framework of Riemannian geometry since the usual diffeomorphism-invariant tensors are not gauge invariant any longer. In particular, higher-spin theories may therefore open the way towards understanding fundamental concepts of space-time geometry; for example, they may well have key lessons in store for how string theory resolves space-time singularities. In this issue we have collected together a number of review papers, summarizing the aforementioned recent developments, as well as research papers indicating current directions of interest in the study of higher-spin gauge theories. We hope that it

  12. Test of Einstein equivalence principle for 0-spin and half-integer-spin atoms: search for spin-gravity coupling effects.

    PubMed

    Tarallo, M G; Mazzoni, T; Poli, N; Sutyrin, D V; Zhang, X; Tino, G M

    2014-07-11

    We report on a conceptually new test of the equivalence principle performed by measuring the acceleration in Earth's gravity field of two isotopes of strontium atoms, namely, the bosonic (88)Sr isotope which has no spin versus the fermionic (87)Sr isotope which has a half-integer spin. The effect of gravity on the two atomic species has been probed by means of a precision differential measurement of the Bloch frequency for the two atomic matter waves in a vertical optical lattice. We obtain the values η=(0.2±1.6)×10(-7) for the Eötvös parameter and k=(0.5±1.1)×10(-7) for the coupling between nuclear spin and gravity. This is the first reported experimental test of the equivalence principle for bosonic and fermionic particles and opens a new way to the search for the predicted spin-gravity coupling effects. PMID:25062176

  13. Test of Einstein equivalence principle for 0-spin and half-integer-spin atoms: search for spin-gravity coupling effects.

    PubMed

    Tarallo, M G; Mazzoni, T; Poli, N; Sutyrin, D V; Zhang, X; Tino, G M

    2014-07-11

    We report on a conceptually new test of the equivalence principle performed by measuring the acceleration in Earth's gravity field of two isotopes of strontium atoms, namely, the bosonic (88)Sr isotope which has no spin versus the fermionic (87)Sr isotope which has a half-integer spin. The effect of gravity on the two atomic species has been probed by means of a precision differential measurement of the Bloch frequency for the two atomic matter waves in a vertical optical lattice. We obtain the values η=(0.2±1.6)×10(-7) for the Eötvös parameter and k=(0.5±1.1)×10(-7) for the coupling between nuclear spin and gravity. This is the first reported experimental test of the equivalence principle for bosonic and fermionic particles and opens a new way to the search for the predicted spin-gravity coupling effects.

  14. Spin-current emission governed by nonlinear spin dynamics

    PubMed Central

    Tashiro, Takaharu; Matsuura, Saki; Nomura, Akiyo; Watanabe, Shun; Kang, Keehoon; Sirringhaus, Henning; Ando, Kazuya

    2015-01-01

    Coupling between conduction electrons and localized magnetization is responsible for a variety of phenomena in spintronic devices. This coupling enables to generate spin currents from dynamical magnetization. Due to the nonlinearity of magnetization dynamics, the spin-current emission through the dynamical spin-exchange coupling offers a route for nonlinear generation of spin currents. Here, we demonstrate spin-current emission governed by nonlinear magnetization dynamics in a metal/magnetic insulator bilayer. The spin-current emission from the magnetic insulator is probed by the inverse spin Hall effect, which demonstrates nontrivial temperature and excitation power dependences of the voltage generation. The experimental results reveal that nonlinear magnetization dynamics and enhanced spin-current emission due to magnon scatterings are triggered by decreasing temperature. This result illustrates the crucial role of the nonlinear magnon interactions in the spin-current emission driven by dynamical magnetization, or nonequilibrium magnons, from magnetic insulators. PMID:26472712

  15. Quantifying spin Hall angles from spin pumping: experiments and theory.

    PubMed

    Mosendz, O; Pearson, J E; Fradin, F Y; Bauer, G E W; Bader, S D; Hoffmann, A

    2010-01-29

    Spin Hall effects intermix spin and charge currents even in nonmagnetic materials and, therefore, ultimately may allow the use of spin transport without the need for ferromagnets. We show how spin Hall effects can be quantified by integrating Ni{80}Fe{20}|normal metal (N) bilayers into a coplanar waveguide. A dc spin current in N can be generated by spin pumping in a controllable way by ferromagnetic resonance. The transverse dc voltage detected along the Ni{80}Fe{20}|N has contributions from both the anisotropic magnetoresistance and the spin Hall effect, which can be distinguished by their symmetries. We developed a theory that accounts for both. In this way, we determine the spin Hall angle quantitatively for Pt, Au, and Mo. This approach can readily be adapted to any conducting material with even very small spin Hall angles.

  16. Designing electron spin textures and spin interferometers by shape deformations

    NASA Astrophysics Data System (ADS)

    Ying, Zu-Jian; Gentile, Paola; Ortix, Carmine; Cuoco, Mario

    2016-08-01

    We demonstrate that the spin orientation of an electron propagating in a one-dimensional nanostructure with Rashba spin-orbit (SO) coupling can be manipulated on demand by changing the geometry of the nanosystem. Shape deformations that result in a nonuniform curvature give rise to complex three-dimensional spin textures in space. We employ the paradigmatic example of an elliptically deformed quantum ring to unveil the way to get an all-geometrical and all-electrical control of the spin orientation. The resulting spin textures exhibit a tunable topological character with windings around the radial and the out-of-plane directions. We show that these topologically nontrivial spin patterns affect the spin interference effect in the deformed ring, thereby resulting in different geometry-driven ballistic electronic transport behaviors. Our results establish a deep connection between electronic spin textures, spin transport, and the nanoscale shape of the system.

  17. Spin-Current and Spin-Splitting in Helicoidal Molecules Due to Spin-Orbit Coupling.

    PubMed

    Caetano, R A

    2016-01-01

    The use of organic materials in spintronic devices has been seriously considered after recent experimental works have shown unexpected spin-dependent electrical properties. The basis for the confection of any spintronic device is ability of selecting the appropriated spin polarization. In this direction, DNA has been pointed out as a potential candidate for spin selection due to the spin-orbit coupling originating from the electric field generated by accumulated electrical charges along the helix. Here, we demonstrate that spin-orbit coupling is the minimum ingredient necessary to promote a spatial spin separation and the generation of spin-current. We show that the up and down spin components have different velocities that give rise to a spin-current. By using a simple situation where spin-orbit coupling is present, we provide qualitative justifications to our results that clearly point to helicoidal molecules as serious candidates to integrate spintronic devices. PMID:27009836

  18. Spin-Current and Spin-Splitting in Helicoidal Molecules Due to Spin-Orbit Coupling

    PubMed Central

    Caetano, R. A.

    2016-01-01

    The use of organic materials in spintronic devices has been seriously considered after recent experimental works have shown unexpected spin-dependent electrical properties. The basis for the confection of any spintronic device is ability of selecting the appropriated spin polarization. In this direction, DNA has been pointed out as a potential candidate for spin selection due to the spin-orbit coupling originating from the electric field generated by accumulated electrical charges along the helix. Here, we demonstrate that spin-orbit coupling is the minimum ingredient necessary to promote a spatial spin separation and the generation of spin-current. We show that the up and down spin components have different velocities that give rise to a spin-current. By using a simple situation where spin-orbit coupling is present, we provide qualitative justifications to our results that clearly point to helicoidal molecules as serious candidates to integrate spintronic devices. PMID:27009836

  19. Spin Transfer from an Optically Pumped Alkali Vapor to a Solid

    SciTech Connect

    Ishikawa, K.; Patton, B.; Jau, Y.-Y.; Happer, W.

    2007-05-04

    We report enhancement of the spin polarization of {sup 133}Cs nuclei in CsH salt by spin transfer from an optically pumped cesium vapor. The nuclear polarization was 4.0 times the equilibrium polarization at 9.4 T and 137 deg. C, with larger enhancements at lower fields. This work is the first demonstration of spin transfer from a polarized alkali vapor to the nuclei of a solid, opening up new possibilities for research in hyperpolarized materials.

  20. Consequences of the thermal dependence of spin orbit coupling in semiconductors

    NASA Astrophysics Data System (ADS)

    Chowdhury, Debashree

    2016-11-01

    The k → · p → perturbation theory in semiconductor modifies some spin related parameters of the semi-conducting system. Furthermore, renormalization of the Kane model parameters occurs when temperature appears in the scenario. In this paper, we have analyzed the consequences of this renormalized Kane parameters on some spin transport issues. It is noteworthy to study that the temperature corrected scenario can open a new direction towards the spin calorimetric applications in semiconductors.

  1. Subtle structural changes in the Asp251Gly/Gln307His P450 BM3 mutant responsible for new activity toward diclofenac, tolbutamide and ibuprofen.

    PubMed

    Di Nardo, Giovanna; Dell'Angelo, Valentina; Catucci, Gianluca; Sadeghi, Sheila J; Gilardi, Gianfranco

    2016-07-15

    This paper reports the structure of the double mutant Asp251Gly/Gln307His (named A2) generated by random mutagenesis, able to produce 4'-hydroxydiclofenac, 2-hydroxyibuprofen and 4-hydroxytolbutamide from diclofenac, ibuprofen and tolbutamide, respectively. The 3D structure of the substrate-free mutant shows a conformation similar to the closed one found in the substrate-bound wild type enzyme, but with a higher degree of disorder in the region of the G-helix and F-G loop. This is due to the mutation Asp251Gly that breaks the salt bridge between Aps251 on I-helix and Lys224 on G-helix, allowing the G-helix to move away from I-helix and conferring a higher degree of flexibility to this element. This subtle structural change is accompanied by long-range structural rearrangements of the active site with the rotation of Phe87 and a reorganization of catalytically important water molecules. The impact of these structural features on thermal stability, reduction potential and electron transfer is investigated. The data demonstrate that a single mutation far from the active site triggers an increase in protein flexibility in a key region, shifting the conformational equilibrium toward the closed form that is ready to accept electrons and enter the P450 catalytic cycle as soon as a substrate is accepted. PMID:26718083

  2. Associations between Dietary Patterns, ADRβ2 Gln27Glu and ADRβ3 Trp64Arg with Regard to Serum Triglyceride Levels: J-MICC Study.

    PubMed

    Nanri, Hinako; Nishida, Yuichiro; Nakamura, Kazuyo; Tanaka, Keitaro; Naito, Mariko; Yin, Guang; Hamajima, Nobuyuki; Takashima, Naoyuki; Suzuki, Sadao; Nindita, Yora; Kohno, Michiko; Uemura, Hirokazu; Koyama, Teruhide; Hosono, Satoyo; Mikami, Haruo; Kubo, Michiaki; Tanaka, Hideo

    2016-01-01

    Interactions between dietary patterns and 2 β-adrenergic receptor (ADRβ) gene polymorphisms (ADRβ2 Gln27Glu and ADRβ3 Trp64Arg) were examined with regard to the effects on serum triglyceride levels. The cross-sectional study comprised 1720 men and women (aged 35-69 years) enrolled in the Japan Multi-Institutional Collaborative Cohort (J-MICC) Study. Genotyping was conducted using a multiplex polymerase chain reaction-based invader assay. We used 46 items from a validated short food frequency questionnaire and examined major dietary patterns by factor analysis. We identified four dietary patterns: healthy, Western, seafood and bread patterns. There was no significant association between any dietary pattern and serum triglyceride levels. After a separate genotype-based analysis, significant interactions between ADRβ3 Trp64Arg genotype and the bread pattern (p for interaction = 0.01) were associated with serum triglyceride levels; specifically, after adjusting for confounding factors, Arg allele carriers with the bread pattern had lower serum triglycerides (p for trend = 0.01). However, the Trp/Trp homozygous subjects with the bread pattern showed no association with serum triglycerides (p for trend = 0.55). Interactions between other dietary patterns and ADRβ polymorphisms were not significant for serum triglyceride levels. Our findings suggest that ADRβ3 polymorphism modifies the effects of the bread pattern on triglyceride levels. PMID:27608039

  3. Roles of distal arginine in activity and stability of Coprinus cinereus peroxidase elucidated by kinetic and NMR analysis of the Arg51Gln, -Asn, -Leu, and -Lys mutants.

    PubMed

    Schiødt, Christine B; Veitch, Nigel C; Welinder, Karen G

    2007-02-01

    In heme peroxidases, a distal His residue plays an essential role in the initial two electron oxidation of resting state enzyme to compound I by hydrogen peroxide. A distal Arg residue assists in this process. The contributions of the charge, H-bonding capacity, size, and mobility of this Arg residue to Coprinus cinereus peroxidase (CIP) reactivity and stability have been examined by substituting Arg51 with Gln (retains H-bond donor at N epsilon position), Asn (small size, H-bond donor and acceptor), Leu (similar to Asn, but hydrophobic), and Lys (charge and H-bond donor, but at N zeta position). UV-visible spectroscopy was used to monitor pH-linked heme changes, compound I formation and reduction, fluoride binding, and thermostability. (1)H NMR spectroscopy enabled heme pocket differences in both resting and cyanide-ligated states of the enzymes to be evaluated and compared with wild-type CIP. We found that the H-bonding capacity of distal Arg is key to fast compound I formation and ligand binding to heme, whereas charge is important for lowering the pK(a) of distal His and for the binding and stabilisation of anionic ligands at heme iron. The properties of the distal Arg residue in CIP, cytochrome c peroxidase (CCP) and horseradish peroxidase (HRP) differ significantly in their pH induced transitions and dynamics.

  4. Associations between Dietary Patterns, ADRβ2 Gln27Glu and ADRβ3 Trp64Arg with Regard to Serum Triglyceride Levels: J-MICC Study

    PubMed Central

    Nanri, Hinako; Nishida, Yuichiro; Nakamura, Kazuyo; Tanaka, Keitaro; Naito, Mariko; Yin, Guang; Hamajima, Nobuyuki; Takashima, Naoyuki; Suzuki, Sadao; Nindita, Yora; Kohno, Michiko; Uemura, Hirokazu; Koyama, Teruhide; Hosono, Satoyo; Mikami, Haruo; Kubo, Michiaki; Tanaka, Hideo

    2016-01-01

    Interactions between dietary patterns and 2 β-adrenergic receptor (ADRβ) gene polymorphisms (ADRβ2 Gln27Glu and ADRβ3 Trp64Arg) were examined with regard to the effects on serum triglyceride levels. The cross-sectional study comprised 1720 men and women (aged 35–69 years) enrolled in the Japan Multi-Institutional Collaborative Cohort (J-MICC) Study. Genotyping was conducted using a multiplex polymerase chain reaction-based invader assay. We used 46 items from a validated short food frequency questionnaire and examined major dietary patterns by factor analysis. We identified four dietary patterns: healthy, Western, seafood and bread patterns. There was no significant association between any dietary pattern and serum triglyceride levels. After a separate genotype-based analysis, significant interactions between ADRβ3 Trp64Arg genotype and the bread pattern (p for interaction = 0.01) were associated with serum triglyceride levels; specifically, after adjusting for confounding factors, Arg allele carriers with the bread pattern had lower serum triglycerides (p for trend = 0.01). However, the Trp/Trp homozygous subjects with the bread pattern showed no association with serum triglycerides (p for trend = 0.55). Interactions between other dietary patterns and ADRβ polymorphisms were not significant for serum triglyceride levels. Our findings suggest that ADRβ3 polymorphism modifies the effects of the bread pattern on triglyceride levels. PMID:27608039

  5. Molecular determinants of enterovirus 71 viral entry: cleft around GLN-172 on VP1 protein interacts with variable region on scavenge receptor B 2.

    PubMed

    Chen, Pan; Song, Zilin; Qi, Yonghe; Feng, Xiaofeng; Xu, Naiqing; Sun, Yinyan; Wu, Xing; Yao, Xin; Mao, Qunyin; Li, Xiuling; Dong, Wenjuan; Wan, Xiaobo; Huang, Niu; Shen, Xinliang; Liang, Zhenglun; Li, Wenhui

    2012-02-24

    Enterovirus 71 (EV71) is one of the major pathogens that cause hand, foot, and mouth disease outbreaks in young children in the Asia-Pacific region in recent years. Human scavenger receptor class B 2 (SCARB2) is the main cellular receptor for EV71 on target cells. The requirements of the EV71-SCARB2 interaction have not been fully characterized, and it has not been determined whether SCARB2 serves as an uncoating receptor for EV71. Here we compared the efficiency of the receptor from different species including human, horseshoe bat, mouse, and hamster and demonstrated that the residues between 144 and 151 are critical for SCARB2 binding to viral capsid protein VP1 of EV71 and seven residues from the human receptor could convert murine SCARB2, an otherwise inefficient receptor, to an efficient receptor for EV71 viral infection. We also identified that EV71 binds to SCARB2 via a canyon of VP1 around residue Gln-172. Soluble SCARB2 could convert the EV71 virions from 160 S to 135 S particles, indicating that SCARB2 is an uncoating receptor of the virus. The uncoating efficiency of SCARB2 significantly increased in an acidic environment (pH 5.6). These studies elucidated the viral capsid and receptor determinants of enterovirus 71 infection and revealed a possible target for antiviral interventions.

  6. A/G Gln20Arg (exon 1) and G/A Val156Met (exon 5) polymorphisms of the human orosomucoid 1 gene in Mexico.

    PubMed

    García-Ortiz, L; Vargas-Alarcón, G; Fragoso, J M; Granados, J; Maldonado Noriega, L; Navas Pérez, A; Huerta Reyes, E; Zenteno-Ruiz, J C; Martínez-Cordero, E

    2008-01-08

    The human orosomucoid 1 gene (ORM1) codes an alpha-1-acid glycoprotein that has been classified as an acute-phase reactive protein, and a major drug-binding serum component, as well as an immunomodulatory protein with genetic polymorphisms. Evaluation of ORM variation through isoelectric focusing and immunobloting has revealed a world-wide distribution of the ORM1 F and ORM1 S alleles. We evaluated and examined the genetic characteristics of two Mexican populations that have different anthropological and cultural antecedents, examining two ORM1 genotypes (exon 1 - A/G (Gln20Arg) and exon 5 G/A (Val156Met)) in 145 individuals, using nested polymerase chain reaction, sequencing, and restricted fragment length polymorphism. Mexican Mestizos had higher frequencies of the exon 1 A allele (P = 0.020) and AA genotype (P = 0.018) and lower frequency of the G allele (P = 0.020) when compared to Teenek Amerindians. When we examined exon 5 G/A (Val156Met) polymorphisms, we found significantly higher frequencies of the G allele (P = 0.0007) and the GG genotype (P = 0.0003) in the Mexican Mestizo population. The Teenek population had a significantly higher frequency of the A allele than has been reported for Chinese and African (P < 0.05) populations, and the G/A genotype was more frequently found in this Mexican population than in Chinese, African and European populations (P < 0.05).

  7. Measurements of nuclear spin dynamics by spin-noise spectroscopy

    SciTech Connect

    Ryzhov, I. I.; Poltavtsev, S. V.; Kozlov, G. G.; Zapasskii, V. S.; Kavokin, K. V.; Glazov, M. M.; Vladimirova, M.; Scalbert, D.; Cronenberger, S.; Lemaître, A.; Bloch, J.

    2015-06-15

    We exploit the potential of the spin noise spectroscopy (SNS) for studies of nuclear spin dynamics in n-GaAs. The SNS experiments were performed on bulk n-type GaAs layers embedded into a high-finesse microcavity at negative detuning. In our experiments, nuclear spin polarisation initially prepared by optical pumping is monitored in real time via a shift of the peak position in the electron spin noise spectrum. We demonstrate that this shift is a direct measure of the Overhauser field acting on the electron spin. The dynamics of nuclear spin is shown to be strongly dependent on the electron concentration.

  8. Magnetization plateaux in Bethe ansatz solvable spin-S ladders

    NASA Astrophysics Data System (ADS)

    Maslen, M.; Batchelor, M.; de Gier, J.

    2003-07-01

    We examine the properties of the Bethe ansatz solvable two- and three-leg spin-S ladders. These models include Heisenberg rung interactions of arbitrary strength and thus capture the physics of the spin-S Heisenberg ladders for strong rung coupling. The discrete values derived for the magnetization plateaux are seen to fit with the general prediction based on the Lieb-Schultz-Mattis theorem. We examine the magnetic phase diagram of the spin-1 ladder in detail and find an extended magnetization plateau at the fractional value =1/2 in agreement with the experimental observation for the organic polyradical spin-1 ladder compound BIP-TENO.

  9. Quantum spin dynamics with pairwise-tunable, long-range interactions.

    PubMed

    Hung, C-L; González-Tudela, Alejandro; Cirac, J Ignacio; Kimble, H J

    2016-08-23

    We present a platform for the simulation of quantum magnetism with full control of interactions between pairs of spins at arbitrary distances in 1D and 2D lattices. In our scheme, two internal atomic states represent a pseudospin for atoms trapped within a photonic crystal waveguide (PCW). With the atomic transition frequency aligned inside a band gap of the PCW, virtual photons mediate coherent spin-spin interactions between lattice sites. To obtain full control of interaction coefficients at arbitrary atom-atom separations, ground-state energy shifts are introduced as a function of distance across the PCW. In conjunction with auxiliary pump fields, spin-exchange versus atom-atom separation can be engineered with arbitrary magnitude and phase, and arranged to introduce nontrivial Berry phases in the spin lattice, thus opening new avenues for realizing topological spin models. We illustrate the broad applicability of our scheme by explicit construction for several well-known spin models. PMID:27496329

  10. Atomic-Scale Engineering of Abrupt Interface for Direct Spin Contact of Ferromagnetic Semiconductor with Silicon

    PubMed Central

    Averyanov, Dmitry V.; Karateeva, Christina G.; Karateev, Igor A.; Tokmachev, Andrey M.; Vasiliev, Alexander L.; Zolotarev, Sergey I.; Likhachev, Igor A.; Storchak, Vyacheslav G.

    2016-01-01

    Control and manipulation of the spin of conduction electrons in industrial semiconductors such as silicon are suggested as an operating principle for a new generation of spintronic devices. Coherent injection of spin-polarized carriers into Si is a key to this novel technology. It is contingent on our ability to engineer flawless interfaces of Si with a spin injector to prevent spin-flip scattering. The unique properties of the ferromagnetic semiconductor EuO make it a prospective spin injector into silicon. Recent advances in the epitaxial integration of EuO with Si bring the manufacturing of a direct spin contact within reach. Here we employ transmission electron microscopy to study the interface EuO/Si with atomic-scale resolution. We report techniques for interface control on a submonolayer scale through surface reconstruction. Thus we prevent formation of alien phases and imperfections detrimental to spin injection. This development opens a new avenue for semiconductor spintronics. PMID:26957146

  11. Atomic-Scale Engineering of Abrupt Interface for Direct Spin Contact of Ferromagnetic Semiconductor with Silicon

    NASA Astrophysics Data System (ADS)

    Averyanov, Dmitry V.; Karateeva, Christina G.; Karateev, Igor A.; Tokmachev, Andrey M.; Vasiliev, Alexander L.; Zolotarev, Sergey I.; Likhachev, Igor A.; Storchak, Vyacheslav G.

    2016-03-01

    Control and manipulation of the spin of conduction electrons in industrial semiconductors such as silicon are suggested as an operating principle for a new generation of spintronic devices. Coherent injection of spin-polarized carriers into Si is a key to this novel technology. It is contingent on our ability to engineer flawless interfaces of Si with a spin injector to prevent spin-flip scattering. The unique properties of the ferromagnetic semiconductor EuO make it a prospective spin injector into silicon. Recent advances in the epitaxial integration of EuO with Si bring the manufacturing of a direct spin contact within reach. Here we employ transmission electron microscopy to study the interface EuO/Si with atomic-scale resolution. We report techniques for interface control on a submonolayer scale through surface reconstruction. Thus we prevent formation of alien phases and imperfections detrimental to spin injection. This development opens a new avenue for semiconductor spintronics.

  12. Quantum spin dynamics with pairwise-tunable, long-range interactions

    NASA Astrophysics Data System (ADS)

    Hung, C.-L.; González-Tudela, Alejandro; Cirac, J. Ignacio; Kimble, H. J.

    2016-08-01

    We present a platform for the simulation of quantum magnetism with full control of interactions between pairs of spins at arbitrary distances in 1D and 2D lattices. In our scheme, two internal atomic states represent a pseudospin for atoms trapped within a photonic crystal waveguide (PCW). With the atomic transition frequency aligned inside a band gap of the PCW, virtual photons mediate coherent spin-spin interactions between lattice sites. To obtain full control of interaction coefficients at arbitrary atom-atom separations, ground-state energy shifts are introduced as a function of distance across the PCW. In conjunction with auxiliary pump fields, spin-exchange versus atom-atom separation can be engineered with arbitrary magnitude and phase, and arranged to introduce nontrivial Berry phases in the spin lattice, thus opening new avenues for realizing topological spin models. We illustrate the broad applicability of our scheme by explicit construction for several well-known spin models.

  13. Ultrafast spin-polarization control of Dirac fermions in topological insulators

    NASA Astrophysics Data System (ADS)

    Sánchez-Barriga, J.; Golias, E.; Varykhalov, A.; Braun, J.; Yashina, L. V.; Schumann, R.; Minár, J.; Ebert, H.; Kornilov, O.; Rader, O.

    2016-04-01

    Three-dimensional topological insulators (TIs) are characterized by spin-polarized Dirac-cone surface states that are protected from backscattering by time-reversal symmetry. Control of the spin polarization of topological surface states (TSSs) using femtosecond light pulses opens novel perspectives for the generation and manipulation of dissipationless surface spin currents on ultrafast time scales. Using time-, spin-, and angle-resolved spectroscopy, we directly monitor the ultrafast response of the spin polarization of photoexcited TSSs to circularly polarized femtosecond pulses of infrared light. We achieve all-optical switching of the transient out-of-plane spin polarization, which relaxes in about 1.2 ps. Our observations establish the feasibility of ultrafast optical control of spin-polarized Dirac fermions in TIs and pave the way for optospintronic applications at ultimate speeds.

  14. Development of a spinning wave heat engine

    NASA Technical Reports Server (NTRS)

    Zinn, B. T.; Powell, E. A.; Hubbartt, J. E.

    1982-01-01

    A theoretical analysis and an experimental investigation were conducted to assess the feasibility of developing a spinning wave heat engine. Such as engine would utilize a large amplitude traveling acoustic wave rotating around a cylindrica chamber, and it should not suffer from the inefficiency, noise, and intermittent thrust which characterizes pulse jet engines. The objective of this investigation was to determine whether an artificially driven large amplitude spinning transverse wave could induce a steady flow of air through the combustion chamber under cold flow conditions. In the theoretical analysis the Maslen and Moore perturbation technique was extended to study flat cylinders (pancake geometry) with completely open side walls and a central opening. In the parallel experimental study, a test moel was used to determine resonant frequencies and radial pressure distributions, as well as oscillatory and steady flow velocities at the inner and outer peripheries. The experimental frequency was nearly the same as the theoretical acoustic value for a model of the same outer diameter but without a central hole. Although the theoretical analysis did not predict a steady velocity component, simulaneous measurements of hotwire and microphone responses have shown that the spinning wave pumps a mean flow radially outward through the cavity.

  15. Spin correlation and Majorana spectrum in chiral spin liquids in a decorated-honeycomb Kitaev model

    NASA Astrophysics Data System (ADS)

    Nasu, Joji; Motome, Yukitoshi

    2016-02-01

    Temperature evolution of the spin correlation and excitation spectrum is investigated for the Kitaev model defined on a decorated honeycomb lattice by using the quantum Monte Carlo simulation in the Majorana fermion representation. The ground state of this quantum spin model is given by two kinds of chiral spin liquids: one is topologically trivial with Abelian anyon excitations, and the other is topologically nontrivial with non-Abelian anyon excitations. While lowering temperature, the model exhibits several crossovers in the paramagnetic state, which originate from the fractionalization of quantum spins into Majorana fermions, in addition to a phase transition associated with time reversal symmetry breaking. We show that the spin correlation develops around the crossover temperatures, whereas it shows a slight change at the critical temperature, as in other Kitaev-type models. We also calculate the excitation spectrum in terms of Majorana fermions, and find that the excitation gap in the non-Abelian phase is fragile against thermal fluctuations of the Z2 fluxes, while that in the Abelian phase remains open.

  16. The determination of the in situ structure by nuclear spin contrast variation

    SciTech Connect

    Stuhrmann, H.B.; Nierhaus, K.H.

    1994-12-31

    Polarized neutron scattering from polarized nuclear spins in hydrogenous substances opens a new way of contrast variation. The enhanced contrast due to proton spin polarization was used for the in situ structure determination of tRNA of the functional complex of the E.coli ribosome.

  17. Basic spin physics.

    PubMed

    Pipe, J G

    1999-11-01

    Magnetic resonance imaging is fundamentally a measurement of the magnetism inherent in some nuclear isotopes; of these the proton, or hydrogen atom, is of particular interest for clinical applications. The magnetism in each nucleus is often referred to as spin. A strong, static magnetic field B0 is used to align spins, forming a magnetic density within the patient. A second, rotating magnetic field B1 (RF pulse) is applied for a short duration, which rotates the spins away from B0 in a process called excitation. After the spins are rotated away from B0, the RF pulse is turned off, and the spins precess about B0. As long as the spins are all pointing in the same direction at any one time (have phase coherence), they act in concert to create rapidly oscillating magnetic fields. These fields in turn create a current in an appropriately placed receiver coil, in a manner similar to that of an electrical generator. The precessing magnetization decays rapidly in a duration roughly given by the T2 time constant. At the same time, but at a slower rate, magnetization forms again along the direction of B0; the duration of this process is roughly expressed by the T1 time constant. The precessional frequency of each spin is proportional to the magnetic field experienced at the nucleus. Small variations in this magnetic field can have dramatic effects on the MR image, caused in part by loss of phase coherence. These magnetic field variations can arise because of magnet design, the magnetic properties (susceptibility) of tissues and other materials, and the nuclear environment unique to various sites within any given molecule. The loss of phase coherence can be effectively eliminated by the use of RF refocusing pulses. Conventional MR imaging experiments can be characterized as either gradient echo or spin echo, the latter indicating the use of a RF refocusing pulse, and by the parameters TR, TE, and flip angle alpha. Tissues, in turn, are characterized by their individual spin

  18. Spin Hall and Spin Nernst effect from first principles

    NASA Astrophysics Data System (ADS)

    Mertig, Ingrid

    2013-03-01

    Spintronics without magnetic materials is an interesting alternative to the existing spintronics applications. The spin Hall effect creates spin currents in nonmagnetic materials and avoids the problem of spin injection. Future applications of the spin Hall effect require two properties of the materials, a large spin Hall angle and a long spin diffusion length. Ab intio calculations based on density functional theory are a powerful tool to design the desired materials and to get insight into the underlying microscopic processes. We investigated the spin Hall effect in dilute alloys, in particular the intrinsic effect based on the Berry curvature as well as side-jump and the skew-scattering contributions. The results demonstrate that a large extrinsic spin Hall effect is determined by the differences between host and impurity concerning the spin-orbit interaction. It can be caused by light p scatterers as C and N in Au. A comparable large effect is observed for heavy p scatterers as Bi in Cu. An alternative way is to deposit impurities in the adatom position. Furthermore, we predict a spin current perpendicular to a temperature gradient. The phenomenon is called spin Nernst effect. The predicted spin currents can be comparably large as in the case of the spin Hall effect.

  19. Spin pumping by magnetopolaritons

    NASA Astrophysics Data System (ADS)

    Cao, Yunshan; Yan, Peng; Huebl, Hans; Goennenwein, Sebastian; Bauer, Gerrit

    2015-03-01

    Recent experiments report the strong coupling of microwaves to the magnetic insulator yttrium iron garnet with weakly damped magnetization dynamics. We developed a scattering approach to study the coupled magnetization and microwave cavities beyond the paramagnetic/macrospin and rotating wave approximations that are implicit in the Tavis-Cummings model. To this end we solve the coupled Landau-Lifshitz-Gilbert and Maxwell's equations for a thin film magnet in a microwave cavity, leading to rich ferromagnetic spin wave resonance spectra of the transmitted or absorbed microwaves. Our method is valid for the full parameter range spanning the weak to strong coupling limits. We demonstrate strong coupling achievement not only for the FMR mode but also for standing spin waves, although the lowest excitation has a decisive leading role for coupling strength. Spin pumping in FI|N bilayers as detected by inverse spin Hall voltages provides additional access to study strong coupling electrically. Funding from the European Union Seventh Framework Programme [FP7-People-2012-ITN] under Grant Agreement 316657 (SpinIcur).

  20. Geometrically representing spin correlations

    NASA Astrophysics Data System (ADS)

    White, Ian G.; Mirasola, Anthony; Hollingsworth, Jacob; Mukherjee, Rick; Hazzard, Kaden R. A.

    2016-05-01

    We develop a general method to visualize spin correlations, and we demonstrate its usefulness in ultracold matter from fermions in lattices to trapped ions and ultracold molecules. Correlations are of fundamental interest in many-body physics: they characterize phases in condensed matter and AMO, and are required for quantum sensing and computing. However, it is often difficult to understand even the simplest correlations - for example between two spin-1/2's - directly from the components Cab = - for { a , b } ∈ { x , y , z } . Not only are the nine independent Cab unwieldy, but considering the components also obscures the natural geometric structure. For example, simple spin rotations lead to complex transformations among the nine Cab. We provide a one-to-one map between the spin correlations and certain three-dimensional objects, analogous to the map between single spins and Bloch vectors. This object makes the geometric structure of the correlations manifest. Moreover, much as one can reason geometrically about dynamics using a Bloch vector - e.g. a magnetic field causes it to precess and dephasing causes it to shrink - we show that analogous reasoning holds for our visualization method.

  1. Harnessing spin precession with dissipation

    PubMed Central

    Crisan, A. D.; Datta, S.; Viennot, J. J.; Delbecq, M. R.; Cottet, A.; Kontos, T.

    2016-01-01

    Non-collinear spin transport is at the heart of spin or magnetization control in spintronics devices. The use of nanoscale conductors exhibiting quantum effects in transport could provide new paths for that purpose. Here we study non-collinear spin transport in a quantum dot. We use a device made out of a single-wall carbon nanotube connected to orthogonal ferromagnetic electrodes. In the spin transport signals, we observe signatures of out of equilibrium spin precession that are electrically tunable through dissipation. This could provide a new path to harness spin precession in nanoscale conductors. PMID:26816050

  2. Harnessing spin precession with dissipation

    NASA Astrophysics Data System (ADS)

    Crisan, A. D.; Datta, S.; Viennot, J. J.; Delbecq, M. R.; Cottet, A.; Kontos, T.

    2016-01-01

    Non-collinear spin transport is at the heart of spin or magnetization control in spintronics devices. The use of nanoscale conductors exhibiting quantum effects in transport could provide new paths for that purpose. Here we study non-collinear spin transport in a quantum dot. We use a device made out of a single-wall carbon nanotube connected to orthogonal ferromagnetic electrodes. In the spin transport signals, we observe signatures of out of equilibrium spin precession that are electrically tunable through dissipation. This could provide a new path to harness spin precession in nanoscale conductors.

  3. Glutamate-354 of the CP43 polypeptide interacts with the oxygen-evolving Mn4Ca cluster of photosystem II: a preliminary characterization of the Glu354Gln mutant.

    PubMed

    Strickler, Melodie A; Hwang, Hong Jin; Burnap, Robert L; Yano, Junko; Walker, Lee M; Service, Rachel J; Britt, R David; Hillier, Warwick; Debus, Richard J

    2008-03-27

    In the recent X-ray crystallographic structural models of photosystem II, Glu354 of the CP43 polypeptide is assigned as a ligand of the O2-evolving Mn4Ca cluster. In this communication, a preliminary characterization of the CP43-Glu354Gln mutant of the cyanobacterium Synechocystis sp. PCC 6803 is presented. The steady-state rate of O2 evolution in the mutant cells is only approximately 20% compared with the wild-type, but the kinetics of O2 release are essentially unchanged and the O2-flash yields show normal period-four oscillations, albeit with lower overall intensity. Purified PSII particles exhibit an essentially normal S2 state multiline electron paramagnetic resonance (EPR) signal, but exhibit a substantially altered S2-minus-S1 Fourier transform infrared (FTIR) difference spectrum. The intensities of the mutant EPR and FTIR difference spectra (above 75% compared with wild-type) are much greater than the O2 signals and suggest that CP43-Glu354Gln PSII reaction centres are heterogeneous, with a minority fraction able to evolve O2 with normal O2 release kinetics and a majority fraction unable to advance beyond the S2 or S3 states. The S2-minus-S1 FTIR difference spectrum of CP43-Glu354Gln PSII particles is altered in both the symmetric and asymmetric carboxylate stretching regions, implying either that CP43-Glu354 is exquisitely sensitive to the increased charge that develops on the Mn4Ca cluster during the S1-->S2 transition or that the CP43-Glu354Gln mutation changes the distribution of Mn(III) and Mn(IV) oxidation states within the Mn4Ca cluster in the S1 and/or S2 states.

  4. The ion-channel activity of longibrachins LGA I and LGB II: effects of pro-2/Ala and gln-18/Glu substitutions on the alamethicin voltage-gated membrane channels.

    PubMed

    Cosette, P; Rebuffat, S; Bodo, B; Molle, G

    1999-11-01

    Longibrachins LGA I (Ac Aib Ala Aib Ala Aib(5) Ala Gln Aib Val Aib(10) Gly Leu Aib Pro Val(15) Aib Aib Gln Gln Pheol(20), with Aib: alpha-aminoisobutyric acid, pheol: phenylalaninol) and LGB II are two homologous 20-residue long-sequence peptaibols isolated from the fungus Trichoderma longibrachiatum that differ between them by a Gln-18/Glu substitution. They distinguish from alamethicin by a Pro-2 for Ala replacement, which allowed to examine for the first time with natural Aib-containing analogues, the effect of Pro-2 on the ion-channel properties exhibited by alamethicin. The influence of these structural modifications on the voltage-gated ion-channel forming activity of the peptides in planar lipid bilayers were analysed. The general 'barrel-stave' model of ion-channel activity, already described for alamethicin, was preserved with both longibrachins. The negatively charged LGB II promoted higher oligomerisation levels, which could presumably dilute the repulsive effect of the negative Glu ring near the entrance of the channel and resulted in lower lifetimes of the substates, confirming the strong anchor of the peptide C-terminus at the cis-interface. Reduction of the channel lifetimes was observed for the longibrachins, compared to alamethicin. This argues for a better stabilisation of the channels formed by peptaibols having a proline at position 2, which results in better anchoring of the peptide monomer N-terminus at the trans-bilayer interface. Qualitative assays of the temperature dependence on the neutral longibrachin channel properties demonstrated a high increase of channel lifetimes and a markedly reduced voltage-sensitivity when the temperature was decreased, showing that such conditions may allow to study the channel-forming properties of peptides leading to fast current fluctuations. PMID:10556493

  5. The byp1-3 allele of the Saccharomyces cerevisiae GGS1/TPS1 gene and its multi-copy suppressor tRNA(GLN) (CAG): Ggs1/Tps1 protein levels restraining growth on fermentable sugars and trehalose accumulation.

    PubMed

    Hohmann, S; Van Dijck, P; Luyten, K; Thevelein, J M

    1994-10-01

    Byp1-3 is an amber nonsense allele of the Saccharomyces cerevisiae GGS1/TPS1 gene which encodes the small subunit of the trehalose synthase complex. Mutations in this gene confer an inability to grow on glucose or fructose but the phenotype of byp1-3 mutants is leaky in a strain-dependent manner. Overexpression of the isolated byp1-3 allele suppressed the growth defect of a ggs1/tps1 delta mutant. Expression of an in-vitro-generated mutant allele of GGS1/TPS1 that lacks all the coding sequences downstream from the byp1-3 mutation led to the production of a shortened protein that did not complement the ggs1/tps1 delta mutant. We have isolated, as an allele-specific multi-copy suppressor of the growth defect of the byp1-3 mutant on fructose, the gene for tRNA(GLN) (CAG). Thus the leaky phenotype of byp1-3 mutants is due to a low level of read through of the internal nonsense codon by tRNA(GLN) (CAG). Using overexpression of the isolated byp1-3 allele, as well as of the tRNA(GLN) (CAG) gene, we were able to demonstrate that as little as about 10% of the normal Ggs1/Tps1 protein level is sufficient for slow growth on fructose. We also show a correlation between the level of Ggs1/Tps1, the ability to accumulate trehalose in stationary phase and the ability to grow on fermentable sugars. Sequence analysis of the cloned tRNA(GLN) (CAG) gene showed that it is located 700 bp upstream of URA10. However, we found considerable differences to the reported sequence of URA10, in particular in the non-coding region.

  6. Spin rectification induced by spin Hall magnetoresistance at room temperature

    NASA Astrophysics Data System (ADS)

    Wang, P.; Jiang, S. W.; Luan, Z. Z.; Zhou, L. F.; Ding, H. F.; Zhou, Y.; Tao, X. D.; Wu, D.

    2016-09-01

    We have experimentally and theoretically investigated the dc voltage generation in the heterostructure of Pt and yttrium iron garnet under the ferromagnetic resonance. Besides a symmetric Lorenz line shape dc voltage, an antisymmetric Lorenz line shape dc voltage is observed in field scan, which can solely originate from the spin rectification effect due to the spin Hall magnetoresistance. The angular dependence of the dc voltage is theoretically analyzed by taking into account both the spin pumping and the spin rectification effects. We find that the experimental results are in excellent agreement with the theoretical model, further identifying the spin Hall magnetoresistance origin of the spin rectification effect. Moreover, the spin pumping and the spin rectification effects are quantitatively separated by their different angular dependence at particular experimental geometry.

  7. Quantum spin transistor with a Heisenberg spin chain

    NASA Astrophysics Data System (ADS)

    Marchukov, O. V.; Volosniev, A. G.; Valiente, M.; Petrosyan, D.; Zinner, N. T.

    2016-10-01

    Spin chains are paradigmatic systems for the studies of quantum phases and phase transitions, and for quantum information applications, including quantum computation and short-distance quantum communication. Here we propose and analyse a scheme for conditional state transfer in a Heisenberg XXZ spin chain which realizes a quantum spin transistor. In our scheme, the absence or presence of a control spin excitation in the central gate part of the spin chain results in either perfect transfer of an arbitrary state of a target spin between the weakly coupled input and output ports, or its complete blockade at the input port. We also discuss a possible proof-of-concept realization of the corresponding spin chain with a one-dimensional ensemble of cold atoms with strong contact interactions. Our scheme is generally applicable to various implementations of tunable spin chains, and it paves the way for the realization of integrated quantum logic elements.

  8. Quantum spin transistor with a Heisenberg spin chain

    PubMed Central

    Marchukov, O. V.; Volosniev, A. G.; Valiente, M.; Petrosyan, D.; Zinner, N. T.

    2016-01-01

    Spin chains are paradigmatic systems for the studies of quantum phases and phase transitions, and for quantum information applications, including quantum computation and short-distance quantum communication. Here we propose and analyse a scheme for conditional state transfer in a Heisenberg XXZ spin chain which realizes a quantum spin transistor. In our scheme, the absence or presence of a control spin excitation in the central gate part of the spin chain results in either perfect transfer of an arbitrary state of a target spin between the weakly coupled input and output ports, or its complete blockade at the input port. We also discuss a possible proof-of-concept realization of the corresponding spin chain with a one-dimensional ensemble of cold atoms with strong contact interactions. Our scheme is generally applicable to various implementations of tunable spin chains, and it paves the way for the realization of integrated quantum logic elements. PMID:27721438

  9. Spin-orbit coupling and spin relaxation in phosphorene

    NASA Astrophysics Data System (ADS)

    Kurpas, Marcin; Gmitra, Martin; Fabian, Jaroslav

    We employ first principles density functional theory calculations to study intrinsic and extrinsic spin-orbit coupling in monolayer phosphorene. We also extract the spin-mixing amplitudes of the Bloch wave functions to give realistic estimates of the Elliott-Yafet spin relaxation rate. The most remarkable result is the striking anisotropy in both spin-orbit coupling and spin relaxation rates, which could be tested experimentally in spin injection experiments. We also identify spin hot spots in the electronic structure of phosphorene at accidental bands anticrossings. We compare the Elliott-Yafet with Dyakonov-Perel spin relaxation times, obtained from extrinsic couplings in an applied electric field. We also compare the results in phosphorene with those of black phosphorous. This work is supported by the DFG SPP 1538, SFB 689, and by the EU Seventh Framework Programme under Grant Agreement No. 604391 Graphene Flagship.

  10. Spin-Orbit Twisted Spin Waves: Group Velocity Control

    NASA Astrophysics Data System (ADS)

    Perez, F.; Baboux, F.; Ullrich, C. A.; D'Amico, I.; Vignale, G.; Karczewski, G.; Wojtowicz, T.

    2016-09-01

    We present a theoretical and experimental study of the interplay between spin-orbit coupling (SOC), Coulomb interaction, and motion of conduction electrons in a magnetized two-dimensional electron gas. Via a transformation of the many-body Hamiltonian we introduce the concept of spin-orbit twisted spin waves, whose energy dispersions and damping rates are obtained by a simple wave-vector shift of the spin waves without SOC. These theoretical predictions are validated by Raman scattering measurements. With optical gating of the density, we vary the strength of the SOC to alter the group velocity of the spin wave. The findings presented here differ from that of spin systems subject to the Dzyaloshinskii-Moriya interaction. Our results pave the way for novel applications in spin-wave routing devices and for the realization of lenses for spin waves.

  11. Spin filter and spin valve in ferromagnetic graphene

    NASA Astrophysics Data System (ADS)

    Song, Yu; Dai, Gang

    2015-06-01

    We propose and demonstrate that a EuO-induced and top-gated graphene ferromagnetic junction can be simultaneously operated as a spin filter and a spin valve. We attribute such a remarkable result to a coexistence of a half-metal band and a common energy gap for opposite spins in ferromagnetic graphene. We show that both the spin filter and the spin valve can be effectively controlled by a back gate voltage, and they survive for practical metal contacts and finite temperature. Specifically, larger single spin currents and on-state currents can be reached with contacts with work functions similar to graphene, and the spin filter can operate at higher temperature than the spin valve.

  12. Spinning fluids reactor

    DOEpatents

    Miller, Jan D; Hupka, Jan; Aranowski, Robert

    2012-11-20

    A spinning fluids reactor, includes a reactor body (24) having a circular cross-section and a fluid contactor screen (26) within the reactor body (24). The fluid contactor screen (26) having a plurality of apertures and a circular cross-section concentric with the reactor body (24) for a length thus forming an inner volume (28) bound by the fluid contactor screen (26) and an outer volume (30) bound by the reactor body (24) and the fluid contactor screen (26). A primary inlet (20) can be operatively connected to the reactor body (24) and can be configured to produce flow-through first spinning flow of a first fluid within the inner volume (28). A secondary inlet (22) can similarly be operatively connected to the reactor body (24) and can be configured to produce a second flow of a second fluid within the outer volume (30) which is optionally spinning.

  13. Spinning electroweak sphalerons

    SciTech Connect

    Radu, Eugen; Volkov, Mikhail S.

    2009-03-15

    We present numerical evidence for the existence of stationary spinning generalizations for the static sphaleron in the Weinberg-Salam theory. Our results suggest that, for any value of the mixing angle {theta}{sub W} and for any Higgs mass, the spinning sphalerons comprise a family labeled by their angular momentum J. For {theta}{sub W}{ne}0 they possess an electric charge Q=eJ, where e is the electron charge. Inside they contain a monopole-antimonopole pair and a spinning loop of electric current, and for large J, a Regge-type behavior. It is likely that these sphalerons mediate the topological transitions in sectors with J{ne}0, thus enlarging the number of transition channels. Their action decreases with J, which may considerably affect the total transition rate.

  14. Second derivatives for approximate spin projection methods

    SciTech Connect

    Thompson, Lee M.; Hratchian, Hrant P.

    2015-02-07

    The use of broken-symmetry electronic structure methods is required in order to obtain correct behavior of electronically strained open-shell systems, such as transition states, biradicals, and transition metals. This approach often has issues with spin contamination, which can lead to significant errors in predicted energies, geometries, and properties. Approximate projection schemes are able to correct for spin contamination and can often yield improved results. To fully make use of these methods and to carry out exploration of the potential energy surface, it is desirable to develop an efficient second energy derivative theory. In this paper, we formulate the analytical second derivatives for the Yamaguchi approximate projection scheme, building on recent work that has yielded an efficient implementation of the analytical first derivatives.

  15. Atom-diatom scattering dynamics of spinning molecules

    SciTech Connect

    Eyles, C. J.; Floß, J.; Averbukh, I. Sh.; Leibscher, M.

    2015-01-14

    We present full quantum mechanical scattering calculations using spinning molecules as target states for nuclear spin selective atom-diatom scattering of reactive D+H{sub 2} and F+H{sub 2} collisions. Molecules can be forced to rotate uni-directionally by chiral trains of short, non-resonant laser pulses, with different nuclear spin isomers rotating in opposite directions. The calculations we present are based on rotational wavepackets that can be created in this manner. As our simulations show, target molecules with opposite sense of rotation are predominantly scattered in opposite directions, opening routes for spatially and quantum state selective scattering of close chemical species. Moreover, two-dimensional state resolved differential cross sections reveal detailed information about the scattering mechanisms, which can be explained to a large degree by a classical vector model for scattering with spinning molecules.

  16. Robust spin squeezing preservation in photonic crystal cavities

    NASA Astrophysics Data System (ADS)

    Zhong, Wo-Jun; Li, Yan-Ling; Xiao, Xing; Xie, Ying-Mao

    2016-08-01

    We show that the robust spin squeezing preservation can be achieved by utilizing detuning modification for an ensemble of N separate two-level atoms embedded in photonic crystal cavities (PCC). In particular, we explore the different dynamical behaviors of spin squeezing between isotropic and anisotropic PCC cases when the atomic frequency is inside the band gap. In both cases, it is shown that the robust preservation of spin squeezing is completely determined by the formation of bound states. Intriguingly, we find that unlike the isotropic case where steady-state spin squeezing varies smoothly when the atomic frequency moves from the inside to the outside band edge, a sudden transition occurs for the anisotropic case. The present results may be of direct importance for, e.g. quantum metrology in open quantum systems.

  17. Quantum spin Hall effect induced by electric field in silicene

    NASA Astrophysics Data System (ADS)

    An, Xing-Tao; Zhang, Yan-Yang; Liu, Jian-Jun; Li, Shu-Shen

    2013-01-01

    We investigate the transport properties in a zigzag silicene nanoribbon in the presence of an external electric field. The staggered sublattice potential and two kinds of Rashba spin-orbit couplings can be induced by the external electric field due to the buckled structure of the silicene. A bulk gap is opened by the staggered potential and gapless edge states appear in the gap by tuning the two kinds of Rashba spin-orbit couplings properly. Furthermore, the gapless edge states are spin-filtered and are insensitive to the non-magnetic disorder. These results prove that the quantum spin Hall effect can be induced by an external electric field in silicene, which may have certain practical significance in applications for future spintronics device.

  18. Zero-bias spin separation

    NASA Astrophysics Data System (ADS)

    Ganichev, Sergey D.; Bel'Kov, Vasily V.; Tarasenko, Sergey A.; Danilov, Sergey N.; Giglberger, Stephan; Hoffmann, Christoph; Ivchenko, Eougenious L.; Weiss, Dieter; Wegscheider, Werner; Gerl, Christian; Schuh, Dieter; Stahl, Joachim; de Boeck, Jo; Borghs, Gustaaf; Prettl, Wilhelm

    2006-09-01

    The generation, manipulation and detection of spin-polarized electrons in low-dimensional semiconductors are at the heart of spintronics. Pure spin currents, that is, fluxes of magnetization without charge current, are quite attractive in this respect. A paradigmatic example is the spin Hall effect, where an electrical current drives a transverse spin current and causes a non-equilibrium spin accumulation observed near the sample boundary. Here we provide evidence for an another effect causing spin currents which is fundamentally different from the spin Hall effect. In contrast to the spin Hall effect, it does not require an electric current to flow: without bias the spin separation is achieved by spin-dependent scattering of electrons in media with suitable symmetry. We show, by free-carrier absorption of terahertz (THz) radiation, that spin currents flow in a wide range of temperatures. Moreover, the experimental results provide evidence that simple electron gas heating by any means is already sufficient to yield spin separation due to spin-dependent energy-relaxation processes.

  19. Squeezed spin states: Squeezing the spin uncertainty relations

    NASA Technical Reports Server (NTRS)

    Kitagawa, Masahiro; Ueda, Masahito

    1993-01-01

    The notion of squeezing in spin systems is clarified, and the principle for spin squeezing is shown. Two twisting schemes are proposed as building blocks for spin squeezing and are shown to reduce the standard quantum noise, s/2, of the coherent S-spin state down to the order of S(sup 1/3) and 1/2. Applications to partition noise suppression are briefly discussed.

  20. Spin fluctations and heavy fermions in the Kondo lattice

    SciTech Connect

    Khaliullin, G.G.

    1994-09-01

    This paper studies the spectrum of the spin and electronic excitations of the Kondo lattice at low temperatures. To avoid unphysical states, the Mattis {open_quotes}drone{close_quotes}-fermion representation for localized spins is employed. First, the known Fermi liquid properties of a single impurity are examined. The behavior of the correlator between a localized spin and the electron spin density at large distances shows that the effective interaction between electrons on the Fermi level and low-energy localized spin fluctuations scales as {rho}{sup {minus}1}, where {rho} is the band-state density. This fact is developed into a renormalization of the band spectrum in a periodic lattice. If the Ruderman-Kittel-Kasuya-Yosida (RKKY) interaction between localized spins is much smaller than the Kondo fluctuation frequency {omega}{sub k}, the temperature of the crossover to the single-parameter Fermi liquid mode is determined by {omega}{sub k}. When the RKKY interaction becomes of order {omega}{sub k}, there is a new scale {omega}{sub sf}, the energy of the (antiferromagnetic) paramagnon mode, with {omega}{sub sf}{much_lt}{omega}{sub k}. Here the coherent Fermi liquid regime is realized only below a temperature T{sub coh} of order {omega}{sub sf}, while above T{sub coh} quasiparticle damping exhibits a linear temperature dependence. Finally, the nuclear-spin relaxation rate is calculated. 42 refs.

  1. Designing spin-channel geometries for entanglement distribution

    NASA Astrophysics Data System (ADS)

    Levi, E. K.; Kirton, P. G.; Lovett, B. W.

    2016-09-01

    We investigate different geometries of spin-1/2 nitrogen impurity channels for distributing entanglement between pairs of remote nitrogen vacancy centers (NVs) in diamond. To go beyond the system size limits imposed by directly solving the master equation, we implement a matrix product operator method to describe the open system dynamics. In so doing, we provide an early demonstration of how the time-evolving block decimation algorithm can be used for answering a problem related to a real physical system that could not be accessed by other methods. For a fixed NV separation there is an interplay between incoherent impurity spin decay and coherent entanglement transfer: Long-transfer-time, few-spin systems experience strong dephasing that can be overcome by increasing the number of spins in the channel. We examine how missing spins and disorder in the coupling strengths affect the dynamics, finding that in some regimes a spin ladder is a more effective conduit for information than a single-spin chain.

  2. Free-Energy Bounds for Hierarchical Spin Models

    NASA Astrophysics Data System (ADS)

    Castellana, Michele; Barra, Adriano; Guerra, Francesco

    2014-04-01

    In this paper we study two non-mean-field (NMF) spin models built on a hierarchical lattice: the hierarchical Edward-Anderson model (HEA) of a spin glass, and Dyson's hierarchical model (DHM) of a ferromagnet. For the HEA, we prove the existence of the thermodynamic limit of the free energy and the replica-symmetry-breaking (RSB) free-energy bounds previously derived for the Sherrington-Kirkpatrick model of a spin glass. These RSB mean-field bounds are exact only if the order-parameter fluctuations (OPF) vanish: given that such fluctuations are not negligible in NMF models, we develop a novel strategy to tackle part of OPF in hierarchical models. The method is based on absorbing part of OPF of a block of spins into an effective Hamiltonian of the underlying spin blocks. We illustrate this method for DHM and show that, compared to the mean-field bound for the free energy, it provides a tighter NMF bound, with a critical temperature closer to the exact one. To extend this method to the HEA model, a suitable generalization of Griffith's correlation inequalities for Ising ferromagnets is needed: since correlation inequalities for spin glasses are still an open topic, we leave the extension of this method to hierarchical spin glasses as a future perspective.

  3. Continuum model for chiral induced spin selectivity in helical molecules

    SciTech Connect

    Medina, Ernesto; González-Arraga, Luis A.; Finkelstein-Shapiro, Daniel; Mujica, Vladimiro; Berche, Bertrand

    2015-05-21

    A minimal model is exactly solved for electron spin transport on a helix. Electron transport is assumed to be supported by well oriented p{sub z} type orbitals on base molecules forming a staircase of definite chirality. In a tight binding interpretation, the spin-orbit coupling (SOC) opens up an effective π{sub z} − π{sub z} coupling via interbase p{sub x,y} − p{sub z} hopping, introducing spin coupled transport. The resulting continuum model spectrum shows two Kramers doublet transport channels with a gap proportional to the SOC. Each doubly degenerate channel satisfies time reversal symmetry; nevertheless, a bias chooses a transport direction and thus selects for spin orientation. The model predicts (i) which spin orientation is selected depending on chirality and bias, (ii) changes in spin preference as a function of input Fermi level and (iii) back-scattering suppression protected by the SO gap. We compute the spin current with a definite helicity and find it to be proportional to the torsion of the chiral structure and the non-adiabatic Aharonov-Anandan phase. To describe room temperature transport, we assume that the total transmission is the result of a product of coherent steps.

  4. Long distance spin communication in chemical vapour deposited graphene

    PubMed Central

    Kamalakar, M. Venkata; Groenveld, Christiaan; Dankert, André; Dash, Saroj P.

    2015-01-01

    Graphene is an ideal medium for long-distance spin communication in future spintronic technologies. So far, the prospect is limited by the smaller sizes of exfoliated graphene flakes and lower spin transport properties of large-area chemical vapour-deposited (CVD) graphene. Here we demonstrate a high spintronic performance in CVD graphene on SiO2/Si substrate at room temperature. We show pure spin transport and precession over long channel lengths extending up to 16 μm with a spin lifetime of 1.2 ns and a spin diffusion length ∼6 μm at room temperature. These spin parameters are up to six times higher than previous reports and highest at room temperature for any form of pristine graphene on industrial standard SiO2/Si substrates. Our detailed investigation reinforces the observed performance in CVD graphene over wafer scale and opens up new prospects for the development of lateral spin-based memory and logic applications. PMID:25857650

  5. Spin Echo in Synchrotrons

    SciTech Connect

    Chao, Alexander W.; Courant, Ernest D.; /Brookhaven

    2006-12-01

    As a polarized beam is accelerated through a depolarization resonance, its polarization is reduced by a well-defined calculable reduction factor. When the beam subsequently crosses a second resonance, the final beam polarization is considered to be reduced by the product of the two reduction factors corresponding to the two crossings, each calculated independently of the other. This is a good approximation when the spread of spin precession frequency {Delta}{nu}{sub spin} of the beam (particularly due to its energy spread) is sufficiently large that the spin precession phases of individual particles smear out completely during the time {tau} between the two crossings. This approximate picture, however, ignores two spin dynamics effects: an interference effect and a spin echo effect. This paper is to address these two effects. The interference effect occurs when {Delta}{nu}{sub spin} is too small, or when {tau} is too short, to complete the smearing process. In this case, the two resonance crossings interfere with each other, and the final polarization exhibits constructive or destructive patterns depending on the exact value of {tau}. Typically, the beam's energy spread is large and this interference effect does not occur. To study this effect, therefore, it is necessary to reduce the beam energy spread and to consider two resonance crossings very close to each other. The other mechanism, also due to the interplay between two resonance crossings, is spin echo. It turns out that even when the precession phases appear to be completely smeared between the two crossings, there will still be a sudden and short-lived echo signal of beam polarization at a time {tau} after the second crossing; the magnitude of which can be as large as 57%. This echo signal exists even when the beam has a sizable energy spread and when {tau} is very large, and could be a sensitive (albeit challenging) way to experimentally test the intricate spin dynamics in a synchrotron. After giving an

  6. Measuring Black Hole Spin

    NASA Astrophysics Data System (ADS)

    Garmire, Gordon

    1999-09-01

    WE PROPOSE TO CARRY OUT A SYSTEMATIC STUDY OF EMISSION AND ABSORPTION SPECTRAL FEATURES THAT ARE OFTEN SEEN IN X-RAY SPECTRA OF BLACK HOLE BINARIES. THE EXCELLENT SENSITIVITY AND ENERGY RESOLUTION OF THE ACIS/HETG COMBINATION WILL NOT ONLY HELP RESOLVE AMBIGUITIES IN INTERPRETING THESE FEATURES, BUT MAY ALLOW MODELLING OF THE EMISSION LINE PROFILES IN DETAIL. THE PROFILES MAY CONTAIN INFORMATION ON SUCH FUNDAMENTAL PROPERTIES AS THE SPIN OF BLACK HOLES. THEREFORE, THIS STUDY COULD LEAD TO A MEASUREMENT OF BLACK HOLE SPIN FOR SELECTED SOURCES. THE RESULT CAN THEN BE DIRECTLY COMPARED WITH THOSE FROM PREVIOUS STUDIES BASED ON INDEPENDENT METHODS.

  7. Spin Wave Genie

    SciTech Connect

    2015-02-16

    The four-dimensional scattering function S(Q,w) obtained by inelastic neutron scattering measurements provides unique "dynamical fingerprints" of the spin state and interactions present in complex magnetic materials. Extracting this information however is currently a slow and complex process that may take an expert -depending on the complexity of the system- up to several weeks of painstaking work to complete. Spin Wave Genie was created to abstract and automate this process. It strives to both reduce the time to complete this analysis and make these calculations more accessible to a broader group of scientists and engineers.

  8. Spin Wave Genie

    2015-02-16

    The four-dimensional scattering function S(Q,w) obtained by inelastic neutron scattering measurements provides unique "dynamical fingerprints" of the spin state and interactions present in complex magnetic materials. Extracting this information however is currently a slow and complex process that may take an expert -depending on the complexity of the system- up to several weeks of painstaking work to complete. Spin Wave Genie was created to abstract and automate this process. It strives to both reduce themore » time to complete this analysis and make these calculations more accessible to a broader group of scientists and engineers.« less

  9. Spin current swapping and spin hall effect in disordered metals

    NASA Astrophysics Data System (ADS)

    Saidaoui, Hamed; Pauyac, Christian; Manchon, Aurelien

    2015-03-01

    The conversion of charge currents into spin currents via the spin Hall effect has attracted intense experimental and theoretical efforts lately, providing an efficient means to generate electric signals and manipulate the magnetization of single layers. More recently, it was proposed that spin-dependent scattering induced by spin-orbit coupled impurities also produces a so-called spin swapping, i.e. an exchange between the spin angular momentum and linear momentum of itinerant electrons. In this work, we investigate the nature of spin swapping and its interplay with extrinsic spin Hall effect and spin relaxation in finite size normal metals. We use two complementary methods based on non-equilibrium Green's function technique. The first method consists in rigorously deriving the drift-diffusion equation of the spin accumulation in the presence of spin-orbit coupled impurities from quantum kinetics using Wigner expansion. The second method is the real-space tight binding modeling of a finite system in the presence of spin-orbit coupled disorder.

  10. Interface-engineered templates for molecular spin memory devices.

    PubMed

    Raman, Karthik V; Kamerbeek, Alexander M; Mukherjee, Arup; Atodiresei, Nicolae; Sen, Tamal K; Lazić, Predrag; Caciuc, Vasile; Michel, Reent; Stalke, Dietmar; Mandal, Swadhin K; Blügel, Stefan; Münzenberg, Markus; Moodera, Jagadeesh S

    2013-01-24

    The use of molecular spin state as a quantum of information for storage, sensing and computing has generated considerable interest in the context of next-generation data storage and communication devices, opening avenues for developing multifunctional molecular spintronics. Such ideas have been researched extensively, using single-molecule magnets and molecules with a metal ion or nitrogen vacancy as localized spin-carrying centres for storage and for realizing logic operations. However, the electronic coupling between the spin centres of these molecules is rather weak, which makes construction of quantum memory registers a challenging task. In this regard, delocalized carbon-based radical species with unpaired spin, such as phenalenyl, have shown promise. These phenalenyl moieties, which can be regarded as graphene fragments, are formed by the fusion of three benzene rings and belong to the class of open-shell systems. The spin structure of these molecules responds to external stimuli (such as light, and electric and magnetic fields), which provides novel schemes for performing spin memory and logic operations. Here we construct a molecular device using such molecules as templates to engineer interfacial spin transfer resulting from hybridization and magnetic exchange interaction with the surface of a ferromagnet; the device shows an unexpected interfacial magnetoresistance of more than 20 per cent near room temperature. Moreover, we successfully demonstrate the formation of a nanoscale magnetic molecule with a well-defined magnetic hysteresis on ferromagnetic surfaces. Owing to strong magnetic coupling with the ferromagnet, such independent switching of an adsorbed magnetic molecule has been unsuccessful with single-molecule magnets. Our findings suggest the use of chemically amenable phenalenyl-based molecules as a viable and scalable platform for building molecular-scale quantum spin memory and processors for technological development.

  11. Thickness dependence and the role of spin transfer torque in nonlinear giant magnetoresistance of permalloy dual spin valves

    NASA Astrophysics Data System (ADS)

    Banerjee, N.; Aziz, A.; Ali, M.; Robinson, J. W. A.; Hickey, B. J.; Blamire, M. G.

    2010-12-01

    The recent discovery of nonlinear current-dependent magnetoresistance in dual spin valve devices [A. Aziz, O. P. Wessely, M. Ali, D. M. Edwards, C. H. Marrows, B. J. Hickey, and M. G. Blamire, Phys. Rev. Lett. 103, 237203 (2009)10.1103/PhysRevLett.103.237203] opens up the possibility for distinct physics which extends the standard model of giant magnetoresistance. When the outer ferromagnetic layers of a dual spin valve are antiparallel, the resulting accumulation of spin in the middle ferromagnetic layer strongly modifies its bulk and interfacial spin asymmetry and resistance. Here, we report experimental evidence of the role of bulk spin accumulation in this nonlinear effect and show that interfacial spin accumulation alone cannot account for the observed dependence of the effect on the thickness of the middle ferromagnetic layer. It is also shown that spin torque acting on the middle ferromagnetic layer combined with the nonlinear effect might be useful in understanding the dynamical features associated with the nonlinear behavior.

  12. Stochastic Evolution of Halo Spin

    NASA Astrophysics Data System (ADS)

    Kim, Juhan

    2015-08-01

    We will introduce an excursion set model for the evolution of halo spin from cosmological N-body simulations. A stochastic differential equation is derived from the definition of halo spin and the distribution of angular momentum changes are measured from simulations. The log-normal distribution of halo spin is found to be a natural consequence of the stochastic differential equation and the resulting spin distribution is found be a function of local environments, halo mass, and redshift.

  13. A novel mutation (Gln226{r_arrow}His) in the alpha1 subunit of the inhibitory glycine-receptor gene (GLRA1) in hereditary hyperekplexia

    SciTech Connect

    Milani, N.; Dalpra, L.; Larizza, L.

    1996-02-01

    Hereditary hyperekplexia, or Startle disease, is a rare dominant neurological disorder with high penetrance and variable expression, mainly characterized by infantile hypertonia and exaggerated startle response. Genetic and radiation hybrid mapping of the hyperekplexia region on distal 5q pointed to a candidate region that included the gene for glycine receptor. Mutations in the {alpha}1 subunit of the inhibitory glycine-receptor gene (GLRA1) subsequently found both in familial and sporadic cases have been causally related to the disease. The glycine receptor (GlyR) is a ligand-gated chloride-channel protein-mediating synaptic inhibition in the spinal cord and other brain regions. It is a pentameric complex comprising homologous {alpha} and {beta} subunits, built from a large N-terminal region followed by four-membrane-spanning segments (M1-M4). The mutations, which were first identified in the GLRA1 gene, occur in the same base pair of exon 6 and result in the substitution of Arg271 of the mature polypeptide with an uncharged amino acid, either leucine, in one family, or glutamine, in three families. The Arg271{yields}Gln substitution is likely to be the most common, because it has subsequently been found in four other families and in a patient without a clear family history. Two other mutations, Tyr279{yields}Cys and Ile244{yields}Asp have been so far identified. The mutational repertoire underlying human hyperekplexia is thus likely to be incomplete because alterations causing either recessive or dominant forms not associated with the classical site mutation might remain undetected. Consistent with this hypothesis, several sporadic and familiar cases screened by either denaturing gradient-gel electrophoresis or SSCP in all exons all escaped detection of the mutation. 15 refs., 2 figs.

  14. Phylogeny of bradyrhizobia from Chinese cowpea miscellany inferred from 16S rRNA, atpD, glnII, and 16S-23S intergenic spacer sequences.

    PubMed

    Zhang, Sufang; Xie, Fuli; Yang, Jiangke; Li, Youguo

    2011-04-01

    The cowpea (Vigna unguiculata L.), peanut (Arachis hypogaea L.), and mung bean (Vigna radiata L.) belong to a group of plants known as the "cowpea miscellany" plants, which are widely cultivated throughout the tropic and subtropical zones of Africa and Asia. However, the phylogeny of the rhizobial strains that nodulate these plants is poorly understood. Previous studies have isolated a diversity of rhizobial strains from cowpea miscellany hosts and have suggested that, phylogenetically, they are from different species. In this work, the phylogeny of 42 slow-growing rhizobial strains, isolated from root nodules of cowpea, peanut, and mung bean from different geographical regions of China, was investigated using sequences from the 16S rRNA, atpD and glnII genes, and the 16S-23S rRNA intergenic spacer. The indigenous rhizobial strains from the cowpea miscellany could all be placed in the genus Bradyrhizobium , and Bradyrhizobium liaoningense and Bradyrhizobium yuanmingense were the main species. Phylogenies derived from housekeeping genes were consistent with phylogenies generated from the ribosomal gene. Mung bean rhizobia clustered only into B. liaoningense and B. yuanmingense and were phylogenetically less diverse than cowpea and peanut rhizobia. Geographical origin was significantly reflected in the phylogeny of mung bean rhizobia. Most cowpea rhizobia were more closely related to the 3 major groups B. liaoningense, B. yuanmingense, and Bradyrhizobium elkanii than to the minor groups Bradyrhizobium japonicum or Bradyrhizobium canariense . However, most peanut rhizobia were more closely related to the 2 major groups B. liaoningense and B. yuanmingense than to the minor group B. elkanii.

  15. Nucleon spin structure

    NASA Astrophysics Data System (ADS)

    Zhu, Wei; Ruan, Jianhong

    2015-10-01

    This paper contains three parts relating to the nucleon spin structure in a simple picture of the nucleon: (i) The polarized gluon distribution in the proton is dynamically predicted starting from a low scale by using a nonlinear quantum chromodynamics (QCD) evolution equation — the Dokshitzer-Gribov-Lipatov-Altarelli-Paris (DGLAP) equation with the parton recombination corrections, where the nucleon is almost consisted only of valence quarks. We find that the contribution of the gluon polarization to the nucleon spin structure is much larger than the predictions of most other theories. This result suggests that a significant orbital angular momentum of the gluons is required to balance the gluon spin momentum. (ii) The spin structure function g1p of the proton is studied, where the perturbative evolution of parton distributions and nonperturbative vector meson dominance (VMD) model are used. We predict g1p asymptotic behavior at small x from lower Q2 to higher Q2. The results are compatible with the data including the early HERA estimations and COMPASS new results. (iii) The generalized Gerasimov-Drell-Hearn (GDH) sum rule is understood based on the polarized parton distributions of the proton with the higher twist contributions. A simple parameterized formula is proposed to clearly present the contributions of different components in the proton to Γ 1p(Q2). The results suggest a possible extended objects with size 0.2-0.3 fm inside the proton.

  16. Artificial frustrated spin systems

    NASA Astrophysics Data System (ADS)

    Perrin, Y.; Chioar, I. A.; Nguyen, V. D.; Lacour, D.; Hehn, M.; Montaigne, F.; Canals, B.; Rougemaille, N.

    2015-09-01

    Complex architectures of nanostructures are routinely elaborated using bottom-up or nanofabrication processes. This technological capability allows scientists to engineer materials with properties that do not exist in nature, but also to manufacture model systems to explore fundamental issues in condensed matter physics. Two-dimensional frustrated arrays of magnetic nanostructures are one class of systems for which theoretical predictions can be tested experimentally. These systems have been the subject of intense research in the last few years and allowed the investigation of a rich physics and fascinating phenomena, such as the exploration of the extensively degenerate ground-state manifolds of spin ice systems, the evidence of new magnetic phases in purely two-dimensional lattices, and the observation of pseudoexcitations involving classical analogues of magnetic monopoles. We show here, experimentally and theoretically, that simple magnetic geometries can lead to unconventional, non-collinear spin textures. For example, kagome arrays of inplane magnetized nano-islands do not show magnetic order. Instead, these systems are characterized by spin textures with intriguing properties, such as chirality, coexistence of magnetic order and disorder, and charge crystallization. Magnetic frustration effects in lithographically patterned kagome arrays of nanomagnets with out-of-plane magnetization also lead to an unusal, and still unknown, magnetic ground state manifold. Besides the influence of the lattice geometry, the micromagnetic nature of the elements constituting the arrays introduce the concept of chiral magnetic monopoles, bringing additional complexity into the physics of artificial frustrated spin systems.

  17. Stabilizing a spinning Skylab.

    NASA Technical Reports Server (NTRS)

    Seltzer, S. M.; Justice, D. W.; Schweitzer, G.; Patel, J. S.

    1972-01-01

    This paper presents the results of a study of the dynamics of a spinning Skylab space station. The stability of motion of several simplified models with flexible appendages was investigated. A digital simulation model that more accurately portrays the complex Skylab vehicle is described, and simulation results are compared with analytically derived results.

  18. Stabilizing a spinning Skylab

    NASA Technical Reports Server (NTRS)

    Seltzer, S. M.; Patel, J. S.; Justice, D. W.; Schweitzer, G. E.

    1972-01-01

    The results are presented of a study of the dynamics of a spinning Skylab space station. The stability of motion of several simplified models with flexible appendages was investigated. A digital simulation model that more accurately portrays the complex Skylab vehicle is described, and simulation results are compared with analytically derived results.

  19. Layered kagome spin ice

    NASA Astrophysics Data System (ADS)

    Hamp, James; Dutton, Sian; Mourigal, Martin; Mukherjee, Paromita; Paddison, Joseph; Ong, Harapan; Castelnovo, Claudio

    Spin ice materials provide a rare instance of emergent gauge symmetry and fractionalisation in three dimensions: the effective degrees of freedom of the system are emergent magnetic monopoles, and the extensively many `ice rule' ground states are those devoid of monopole excitations. Two-dimensional (kagome) analogues of spin ice have also been shown to display a similarly rich behaviour. In kagome ice however the ground-state `ice rule' condition implies the presence everywhere of magnetic charges. As temperature is lowered, an Ising transition occurs to a charge-ordered state, which can be mapped to a dimer covering of the dual honeycomb lattice. A second transition, of Kosterlitz-Thouless or three-state Potts type, occurs to a spin-ordered state at yet lower temperatures, due to small residual energy differences between charge-ordered states. Inspired by recent experimental capabilities in growing spin ice samples with selective (layered) substitution of non-magnetic ions, in this work we investigate the fate of the two ordering transitions when individual kagome layers are brought together to form a three-dimensional pyrochlore structure coupled by long range dipolar interactions. We also consider the response to substitutional disorder and applied magnetic fields.

  20. Does the Moon Spin?

    ERIC Educational Resources Information Center

    Collins, Robert; Simpson, Frances

    2007-01-01

    In this article, the authors explore the question, "Does the Moon spin?", and show how the question is investigated. They emphasise the importance of the process by which people work out what they know, by "learning from the inside out." They stress that those involved in science education have to challenge current conceptions and ideas, making…

  1. Transverse Spin at RHIC

    NASA Astrophysics Data System (ADS)

    Wang, Xiaorong

    2016-03-01

    In recent years, there has been exciting development in both experimental and theoretical studies of transverse spin asymmetries in polarized p+p and and DIS collisions. As a unique polarized proton-proton collider, Relativistic Heavy Ion Collider (RHIC) at Brookhaven National Laboratory (BNL) provides a unique opportunity to investigate the novel physics mechanisms that cause the large single spin asymmetry at the forward rapidity. Both PHENIX and STAR experiments have been studying the transverse spin asymmetries with a variety of final state particles in different kinematic regimes since 2006. Especially, recent theoretical development on scattering a polarized probe on the saturated nuclear may provide a unique way to probe the gluon and quark TMDs. RHIC successfully ran polarized p+Au collisions in 2015. We will expect to have new results from polarized d+Au to compare with existing results from p+p collision to extend our understanding of QCD. Further more, In 2015, PHENIX installed MPC-ex calorimeter at very forward region to measure direct photon AN and STAR installed Roman Pots to study the diffractive events in polarized p+p and p+Au collisions. The recent results on transverse polarized p+p and p+Au collisions from both PHENIX and STAR experiments will be presented in this talk. I will also briefly discuss the possibility for the transverse Spin program at future experiments sPHENIX and forward sPHENIX at RHIC. Supported by US Department of Energy and RIKEN Brookhaven Research Center.

  2. Manipulation of the nuclear spin ensemble in a quantum dot with chirped magnetic resonance pulses

    NASA Astrophysics Data System (ADS)

    Munsch, Mathieu; Wüst, Gunter; Kuhlmann, Andreas V.; Xue, Fei; Ludwig, Arne; Reuter, Dirk; Wieck, Andreas D.; Poggio, Martino; Warburton, Richard J.

    2014-09-01

    The nuclear spins in nanostructured semiconductors play a central role in quantum applications. The nuclear spins represent a useful resource for generating local magnetic fields but nuclear spin noise represents a major source of dephasing for spin qubits. Controlling the nuclear spins enhances the resource while suppressing the noise. NMR techniques are challenging: the group III and V isotopes have large spins with widely different gyromagnetic ratios; in strained material there are large atom-dependent quadrupole shifts; and nanoscale NMR is hard to detect. We report NMR on 100,000 nuclear spins of a quantum dot using chirped radiofrequency pulses. Following polarization, we demonstrate a reversal of the nuclear spin. We can flip the nuclear spin back and forth a hundred times. We demonstrate that chirped NMR is a powerful way of determining the chemical composition, the initial nuclear spin temperatures and quadrupole frequency distributions for all the main isotopes. The key observation is a plateau in the NMR signal as a function of sweep rate: we achieve inversion at the first quantum transition for all isotopes simultaneously. These experiments represent a generic technique for manipulating nanoscale inhomogeneous nuclear spin ensembles and open the way to probe the coherence of such mesoscopic systems.

  3. A quantum phase switch between a single solid-state spin and a photon.

    PubMed

    Sun, Shuo; Kim, Hyochul; Solomon, Glenn S; Waks, Edo

    2016-06-01

    Interactions between single spins and photons are essential for quantum networks and distributed quantum computation. Achieving spin-photon interactions in a solid-state device could enable compact chip-integrated quantum circuits operating at gigahertz bandwidths. Many theoretical works have suggested using spins embedded in nanophotonic structures to attain this high-speed interface. These proposals implement a quantum switch where the spin flips the state of the photon and a photon flips the spin state. However, such a switch has not yet been realized using a solid-state spin system. Here, we report an experimental realization of a spin-photon quantum switch using a single solid-state spin embedded in a nanophotonic cavity. We show that the spin state strongly modulates the polarization of a reflected photon, and a single reflected photon coherently rotates the spin state. These strong spin-photon interactions open up a promising direction for solid-state implementations of high-speed quantum networks and on-chip quantum information processors using nanophotonic devices.

  4. An overview of spin physics

    SciTech Connect

    Prescott, C.Y.

    1991-07-01

    Spin physics is playing an increasingly important role in high energy experiments and theory. This review looks at selected topics in high energy spin physics that were discussed at the 9th International Symposium on High Energy Spin Physics at Bonn in September 1990.

  5. Spin Transport in Semiconductor heterostructures

    SciTech Connect

    Domnita Catalina Marinescu

    2011-02-22

    The focus of the research performed under this grant has been the investigation of spin transport in magnetic semiconductor heterostructures. The interest in these systems is motivated both by their intriguing physical properties, as the physical embodiment of a spin-polarized Fermi liquid, as well as by their potential applications as spintronics devices. In our work we have analyzed several different problems that affect the spin dynamics in single and bi-layer spin-polarized two-dimensional (2D) systems. The topics of interests ranged from the fundamental aspects of the electron-electron interactions, to collective spin and charge density excitations and spin transport in the presence of the spin-orbit coupling. The common denominator of these subjects is the impact at the macroscopic scale of the spin-dependent electron-electron interaction, which plays a much more subtle role than in unpolarized electron systems. Our calculations of several measurable parameters, such as the excitation frequencies of magneto-plasma modes, the spin mass, and the spin transresistivity, propose realistic theoretical estimates of the opposite-spin many-body effects, in particular opposite-spin correlations, that can be directly connected with experimental measurements.

  6. Microwave generation by spin Hall nanooscillators with nanopatterned spin injector

    SciTech Connect

    Zholud, A. Urazhdin, S.

    2014-09-15

    We experimentally study spin Hall nano-oscillators based on Pt/ferromagnet bilayers with nanopatterned Pt spin injection layer. We demonstrate that both the spectral characteristics and the electrical current requirements can be simultaneously improved by reducing the spin injection area. Moreover, devices with nanopatterned Pt spin injector exhibit microwave generation over a wide temperature range that extends to room temperature. Studies of devices with additional Pt spacers under the device electrodes show that the oscillation characteristics are affected not only by the spin injection geometry but also by the effects of Pt/ferromagnet interface on the dynamical properties of the ferromagnet.

  7. Gluonic Spin Contribution to Proton Spin at NLO

    SciTech Connect

    Casey, Andrew

    2011-05-24

    In 1988, when the EMC results showed that the quarks had a much smaller contribution to the spin of the proton than previously thought, the 'Proton Spin Crisis' began. Since then, considerable effort has been directed into discovering the main contributors to proton spin and how much each contributes. One such contributor is the gluonic spin component. QCD NLO evolution equations are combined with boundary conditions obtained from heavy quark decoupling expressions to evolve the equations from infinity to the mass of the charm quark in order to determine the gluonic spin contribution.

  8. Partition functions of classical Heisenberg spin chains with arbitrary and different exchange

    NASA Astrophysics Data System (ADS)

    Cregg, P. J.; García-Palacios, J. L.; Svedlindh, P.

    2008-10-01

    The classical Heisenberg model has been effective in modelling exchange interactions in molecular magnets. In this model, the partition function is important as it allows the calculation of the magnetization and susceptibility. For an ensemble of N-spin sites, this typically involves integrals in 2N dimensions. Here, for two-, three- and four-spin nearest neighbour open linear Heisenberg chains these integrals are reduced to sums of known functions, using a result due to Gegenbauer. For the case of the three- and four-spin chains, the sums are equivalent in form to the results of Joyce. The general result for an N-spin chain is also obtained.

  9. Suppression of Walker breakdown in magnetic domain wall propagation through structural control of spin wave emission

    NASA Astrophysics Data System (ADS)

    Burn, David M.; Atkinson, Del

    2013-06-01

    The control of individual magnetic domain walls has potential for future spintronic memory and data processing applications. The speed and reliability of such devices are determined by the dynamic properties of the domain walls. Typically, spin precession limitations lead to Walker breakdown, limiting wall velocity resulting in low mobility. Here, we show the suppression of Walker breakdown by the careful design of small amplitude periodic nanowire structuring to match the periodicity of domain wall spin structure transformations. This opens up a channel for energy dissipation via spin wave emission, allowing a domain wall to maintain its spin structure during propagation.

  10. Symmetries of quantum transport with Rashba spin-orbit: graphene spintronics.

    PubMed

    Chico, Leonor; Latgé, Andrea; Brey, Luis

    2015-07-01

    The lack of some spatial symmetries in planar devices with Rashba spin-orbit interactions opens up the possibility of producing spin polarized electrical currents in the absence of external magnetic fields or magnetic impurities. We study how the direction of the spin polarization of the current is related to spatial symmetries of the device. As an example of these relations we study numerically the spin-resolved current in graphene nanoribbons. Different configurations are explored and analyzed to demonstrate that graphene nanoflakes may be used as excellent spintronic devices in an all-electrical setup.

  11. Spin-orbit interactions in electronic structure quantum Monte Carlo methods

    NASA Astrophysics Data System (ADS)

    Melton, Cody A.; Zhu, Minyi; Guo, Shi; Ambrosetti, Alberto; Pederiva, Francesco; Mitas, Lubos

    2016-04-01

    We develop generalization of the fixed-phase diffusion Monte Carlo method for Hamiltonians which explicitly depends on particle spins such as for spin-orbit interactions. The method is formulated in a zero-variance manner and is similar to the treatment of nonlocal operators in commonly used static-spin calculations. Tests on atomic and molecular systems show that it is very accurate, on par with the fixed-node method. This opens electronic structure quantum Monte Carlo methods to a vast research area of quantum phenomena in which spin-related interactions play an important role.

  12. Development and Application of Spin Traps, Spin Probes, and Spin Labels.

    PubMed

    Bagryanskaya, Elena G; Krumkacheva, Olesya A; Fedin, Matvey V; Marque, Sylvain R A

    2015-01-01

    This chapter focuses on major achievements of the last decade in the synthesis and applications of spin traps, spin probes, and spin labels. Our discussion on spin trapping is mainly concerned with novel aspects of nitrones used as spin traps and with the kinetics caused by bioreductants. The second part of the chapter deals with recent developments in site-directed spin labeling (SDSL) for studying structure and functions of proteins and nucleic acids. We focus on SDSL EPR distance measurements using advanced trityl and nitroxide labels, on new approaches for incorporation of spin labels in biomolecules, and finally, on recent room/physiological temperature measurements made feasible by these novel spin labels. PMID:26478492

  13. Circuit-quantum electrodynamics with direct magnetic coupling to single-atom spin qubits in isotopically enriched {sup 28}Si

    SciTech Connect

    Tosi, Guilherme Mohiyaddin, Fahd A.; Morello, Andrea; Huebl, Hans

    2014-08-15

    Recent advances in silicon nanofabrication have allowed the manipulation of spin qubits that are extremely isolated from noise sources, being therefore the semiconductor equivalent of single atoms in vacuum. We investigate the possibility of directly coupling an electron spin qubit to a superconducting resonator magnetic vacuum field. By using resonators modified to increase the vacuum magnetic field at the qubit location, and isotopically purified {sup 28}Si substrates, it is possible to achieve coupling rates faster than the single spin dephasing. This opens up new avenues for circuit-quantum electrodynamics with spins, and provides a pathway for dispersive read-out of spin qubits via superconducting resonators.

  14. Spin Textures of Exciton-Polaritons in a Tunable Microcavity with Large TE-TM Splitting.

    PubMed

    Dufferwiel, S; Li, Feng; Cancellieri, E; Giriunas, L; Trichet, A A P; Whittaker, D M; Walker, P M; Fras, F; Clarke, E; Smith, J M; Skolnick, M S; Krizhanovskii, D N

    2015-12-11

    We report an extended family of spin textures of zero-dimensional exciton-polaritons spatially confined in tunable open microcavity structures. The transverse-electric-transverse-magnetic (TE-TM) splitting, which is enhanced in the open cavity structures, leads to polariton eigenstates carrying quantized spin vortices. Depending on the strength and anisotropy of the cavity confining potential and of the TE-TM induced splitting, which can be tuned via the excitonic or photonic fractions, the exciton-polariton emissions exhibit either spin-vortex-like patterns or linear polarization, in good agreement with theoretical modeling.

  15. Spin Textures of Exciton-Polaritons in a Tunable Microcavity with Large TE-TM Splitting

    NASA Astrophysics Data System (ADS)

    Dufferwiel, S.; Li, Feng; Cancellieri, E.; Giriunas, L.; Trichet, A. A. P.; Whittaker, D. M.; Walker, P. M.; Fras, F.; Clarke, E.; Smith, J. M.; Skolnick, M. S.; Krizhanovskii, D. N.

    2015-12-01

    We report an extended family of spin textures of zero-dimensional exciton-polaritons spatially confined in tunable open microcavity structures. The transverse-electric-transverse-magnetic (TE-TM) splitting, which is enhanced in the open cavity structures, leads to polariton eigenstates carrying quantized spin vortices. Depending on the strength and anisotropy of the cavity confining potential and of the TE-TM induced splitting, which can be tuned via the excitonic or photonic fractions, the exciton-polariton emissions exhibit either spin-vortex-like patterns or linear polarization, in good agreement with theoretical modeling.

  16. Spin Circuit Representation of Spin Pumping in Topological Insulators

    NASA Astrophysics Data System (ADS)

    Roy, Kuntal

    Earlier we developed spin circuit representation of spin pumping and combined it with the spin circuit representation for the inverse spin Hall effect to show that it reproduces the established results in literature. Here we construct the spin circuit representation of spin pumping in topological insulators. The discovery of spin-polarized surface states in three-dimensional (3D) topological insulators (TIs) with strong spin-orbit coupling is promising for the development of spintronics. There is considerable bulk conduction too in 3D TIs (e.g., Bi2Se3) apart from possessing the surface states. We utilize the spin circuit model for spin orbit torques in topological insulator surface states to develop the equivalent circuit model of spin pumping in topological insulators. Such equivalent circuit model developed here can be utilized to analyze available experimental results and evaluate more complex structures. This work was supported by FAME, one of six centers of STARnet, a Semiconductor Research Corporation program sponsored by MARCO and DARPA.

  17. Thermal creation of a spin current by Seebeck spin tunneling

    NASA Astrophysics Data System (ADS)

    Jansen, R.; Le Breton, J. C.; Deac, A. M.; Saito, H.; Yuasa, S.

    2013-09-01

    The thermoelectric analog of spin-polarized tunneling, namely Seebeck spin tunneling, is a recently discovered phenomenon that arises from the spin-dependent Seebeck coefficient of a magnetic tunnel contact. In a tunnel junction with one ferromagnetic electrode and one non-magnetic electrode, a temperature difference between the two electrodes creates a spin current across the contact. Here, the basic principle and the observation of Seebeck spin tunneling are described. It is shown how it can be used to create a spin accumulation in silicon driven by a heat flow across a magnetic tunnel contact, without a charge tunnel current. The sign of the spin current depends on the direction of the heat flow, whereas its magnitude is anisotropic, i.e., dependent on the absolute orientation of the magnetization of the ferromagnet. The connection between Seebeck spin tunneling and the tunnel magneto-Seebeck effect, observed in metal magnetic tunnel junctions, is also clarified. Seebeck spin tunneling may be used to convert waste heat into useful thermal spin currents that aid or replace electrical spin current, and thereby improve the energy efficiency of spintronic devices and technologies.

  18. Spin Hall Conductivity and Spin Chern Number for Dirac Systems

    NASA Astrophysics Data System (ADS)

    Yunt, Elif; Dayi, Omer Faruk

    A semiclassical differential form formalism of the spin Hall effect for Dirac systems is presented. In this formalism, space coordinates and momenta are usual dynamical variables, whereas spin is not a dynamical degree of freedom. Spin depicts itself in the matrix-valuedness of equations of motion. We demonstrate that the main contribution to the spin Hall conductivity is given by the spin Chern number whether the spin is conserved or not at the quantum level. We illustrated the formulation within the Kane-Mele model of graphene in the absence and in the presence of the Rashba spin-orbit coupling term. Kane-Mele Model of graphene, which incorporates intrinsic spin-orbit interaction, constitutes the first example of a two dimensional topological insulator. We established the anomalous Hall conductivity as well as the spin Hall conductivity from the term linear in the electric field and the Berry curvature in the the anamolous velocity term. In a basis where the component of spin under consideration is diagonal this term is diagonal. We argue that this semiclassical procedure of calculating the spin Hall conductivity can be generalized to any dimension.

  19. Spin-transfer torque induced spin waves in antiferromagnetic insulators

    NASA Astrophysics Data System (ADS)

    Daniels, Matthew; Guo, Wei; Stocks, G. Malcolm; Xiao, Di; Xiao, Jiang

    2015-03-01

    We explore the possibility of exciting spin waves in insulating antiferromagnetic films by injecting spin current at the surface. We analyze both magnetically compensated and uncompensated interfaces. We find that the spin current induced spin-transfer torque can excite spin waves in insulating antiferromagnetic materials and that the chirality of the excited spin wave is determined by the polarization of the injected spin current. Furthermore, the presence of magnetic surface anisotropy can greatly increase the accessibility of these excitations. Supported by NSF EFRI-1433496 (M.W.D), U.S. DOE Office of Basic Energy Sciences, Materials Sciences and Engineering (D.X. & G.M.S.), Major State Basic Research Project of China and National Natural Science Foundation of China (W.G. and J.X.).

  20. Excitation of coherent propagating spin waves by pure spin currents

    PubMed Central

    Demidov, Vladislav E.; Urazhdin, Sergei; Liu, Ronghua; Divinskiy, Boris; Telegin, Andrey; Demokritov, Sergej O.

    2016-01-01

    Utilization of pure spin currents not accompanied by the flow of electrical charge provides unprecedented opportunities for the emerging technologies based on the electron's spin degree of freedom, such as spintronics and magnonics. It was recently shown that pure spin currents can be used to excite coherent magnetization dynamics in magnetic nanostructures. However, because of the intrinsic nonlinear self-localization effects, magnetic auto-oscillations in the demonstrated devices were spatially confined, preventing their applications as sources of propagating spin waves in magnonic circuits using these waves as signal carriers. Here, we experimentally demonstrate efficient excitation and directional propagation of coherent spin waves generated by pure spin current. We show that this can be achieved by using the nonlocal spin injection mechanism, which enables flexible design of magnetic nanosystems and allows one to efficiently control their dynamic characteristics. PMID:26818232

  1. State diagram of an orthogonal spin transfer spin valve device

    SciTech Connect

    Ye, Li; Wolf, Georg; Pinna, Daniele; Chaves-O'Flynn, Gabriel D.; Kent, Andrew D.

    2015-05-21

    We present the switching characteristics of a spin-transfer device that incorporates a perpendicularly magnetized spin-polarizing layer with an in-plane magnetized free and fixed magnetic layer, known as an orthogonal spin transfer spin valve device. This device shows clear switching between parallel (P) and antiparallel (AP) resistance states and the reverse transition (AP → P) for both current polarities. Further, hysteretic transitions are shown to occur into a state with a resistance intermediate between that of the P and AP states, again for both current polarities. These unusual spin-transfer switching characteristics can be explained within a simple macrospin model that incorporates thermal fluctuations and considers a spin-polarized current that is tilted with respect to the free layer's plane, due to the presence of the spin-transfer torque from the polarizing layer.

  2. Ultrafast Optical Spin Echo for Electron Spins in Semiconductors

    SciTech Connect

    Clark, Susan M.; Fu, Kai-Mei C.; Zhang Qiang; Ladd, Thaddeus D.; Yamamoto, Yoshihisa; Stanley, Colin

    2009-06-19

    Spin-based quantum computing and magnetic resonance techniques rely on the ability to measure the coherence time T{sub 2} of a spin system. We report on the experimental implementation of all-optical spin echo to determine the T{sub 2} time of a semiconductor electron-spin system. We use three ultrafast optical pulses to rotate spins an arbitrary angle and measure an echo signal as the time between pulses is lengthened. Unlike previous spin-echo techniques using microwaves, ultrafast optical pulses allow clean T{sub 2} measurements of systems with dephasing times (T{sub 2}*) fast in comparison to the time scale for microwave control. This demonstration provides a step toward ultrafast optical dynamic decoupling of spin-based qubits.

  3. Spinning compact binary : Independent variables and dynamically preserved spin configurations

    SciTech Connect

    Gergely, Laszlo Arpad

    2010-04-15

    We establish the set of independent variables suitable to monitor the complicated evolution of the spinning compact binary during the inspiral. Our approach is valid up to the second post-Newtonian order, including leading order spin-orbit, spin-spin and mass quadrupole-mass monopole effects, for generic (noncircular, nonspherical) orbits. Then, we analyze the conservative spin dynamics in terms of these variables. We prove that the only binary black hole configuration allowing for spin precessions with equal angular velocities about a common instantaneous axis roughly aligned to the normal of the osculating orbit, is the equal mass and parallel (aligned or antialigned) spin configuration. This analytic result puts limitations on what particular configurations can be selected in numerical investigations of compact binary evolutions, even in those including only the last orbits of the inspiral.

  4. Pseudospin, real spin, and spin polarization of photoemitted electrons

    NASA Astrophysics Data System (ADS)

    Yu, Rui; Weng, Hongming; Fang, Zhong; Dai, Xi

    2016-08-01

    In this paper, we discuss the connections between pseudospin, real spin of electrons in a material, and spin polarization of photoemitted electrons out of a material. By investigating these three spin textures for Bi2Se3 and SmB6 compounds, we find that the spin orientation of photoelectrons for SmB6 has a different correspondence to pseudospin and real spin compared to Bi2Se3 , due to the different symmetry properties of the photoemission matrix between the initial and final states. We calculate the spin polarization and circular dichroism spectra of photoemitted electrons for both compounds, which can be detected by spin-resolved and circular dichroism angle-resolved photoemission spectroscopy experiments.

  5. Quasiequilibria in open quantum systems

    SciTech Connect

    Walls, Jamie D.

    2010-03-15

    In this work, the steady-state or quasiequilibrium resulting from periodically modulating the Liouvillian of an open quantum system, L-circumflex-circumflex(t), is investigated. It is shown that differences between the quasiequilibrium and the instantaneous equilibrium occur due to nonadiabatic contributions from the gauge field connecting the instantaneous eigenstates of L-circumflex-circumflex(t) to a fixed basis. These nonadiabatic contributions are shown to result in an additional rotation and/or depolarization for a single spin-1/2 in a time-dependent magnetic field and to affect the thermal mixing of two coupled spins interacting with a time-dependent magnetic field.

  6. Continuous quantum measurement in spin environments

    NASA Astrophysics Data System (ADS)

    Xie, Dong; Wang, An Min

    2015-08-01

    We derive a stochastic master equation (SME) which describes the decoherence dynamics of a system in spin environments conditioned on the measurement record. Markovian and non-Markovian nature of environment can be revealed by a spectroscopy method based on weak continuous quantum measurement. On account of that correlated environments can lead to a non-local open system which exhibits strong non-Markovian effects although the local dynamics are Markovian, the spectroscopy method can be used to demonstrate that there is correlation between two environments.

  7. Spin Hall controlled magnonic microwaveguides

    SciTech Connect

    Demidov, V. E.; Urazhdin, S.; Rinkevich, A. B.; Reiss, G.; Demokritov, S. O.

    2014-04-14

    We use space-resolved magneto-optical spectroscopy to study the influence of spin Hall effect on the excitation and propagation of spin waves in microscopic magnonic waveguides. We find that the spin Hall effect not only increases the spin-wave propagation length, but also results in an increased excitation efficiency due to the increase of the dynamic susceptibility in the vicinity of the inductive antenna. We show that the efficiency of the propagation length enhancement is strongly dependant on the type of the excited spin-wave mode and its wavelength.

  8. RHIC spin flipper commissioning results

    SciTech Connect

    Bai M.; Roser, T.; Dawson, C.; Kewisch, J.; Makdisi, Y.; Oddo, P.; Pai, C.; Pile, P.

    2012-05-20

    The five AC dipole RHIC spin flipper design in the RHIC Blue ring was first tested during the RHIC 2012 polarized proton operation. The advantage of this design is to eliminate the vertical coherent betatron oscillations outside the spin flipper. The closure of each ac dipole vertical bump was measured with orbital response as well as spin. The effect of the rotating field on the spin motion by the spin flipper was also confirmed by measuring the suppressed resonance at Q{sub s} = 1 - Q{sub osc}.

  9. Determination of the spin diffusion length in germanium by spin optical orientation and electrical spin injection

    NASA Astrophysics Data System (ADS)

    Rinaldi, C.; Bertoli, S.; Asa, M.; Baldrati, L.; Manzoni, C.; Marangoni, M.; Cerullo, G.; Bianchi, M.; Sordan, R.; Bertacco, R.; Cantoni, M.

    2016-10-01

    The measurement of the spin diffusion length and/or lifetime in semiconductors is a key issue for the realisation of spintronic devices, exploiting the spin degree of freedom of carriers for storing and manipulating information. In this paper, we address such parameters in germanium (0 0 1) at room temperature (RT) by three different measurement methods. Exploiting optical spin orientation in the semiconductor and spin filtering across an insulating MgO barrier, the dependence of the resistivity on the spin of photo-excited carriers in Fe/MgO/Ge spin photodiodes (spin-PDs) was electrically detected. A spin diffusion length of 0.9  ±  0.2 µm was obtained by fitting the photon energy dependence of the spin signal by a mathematical model. Electrical techniques, comprising non-local four-terminal and Hanle measurements performed on CoFeB/MgO/Ge lateral devices, led to spin diffusion lengths of 1.3  ±  0.2 µm and 1.3  ±  0.08 µm, respectively. Despite minor differences due to experimental details, the order of magnitude of the spin diffusion length is the same for the three techniques. Although standard electrical methods are the most employed in semiconductor spintronics for spin diffusion length measurements, here we demonstrate optical spin orientation as a viable alternative for the determination of the spin diffusion length in semiconductors allowing for optical spin orientation.

  10. Spin thermoelectric efficiency across a normal-metal/ferromagnetic-insulator interface

    NASA Astrophysics Data System (ADS)

    Yan, Yonghong; Wu, Haifei; Jiang, Feng

    2016-08-01

    We investigate the spin and heat transport across a normal-metal/ferromagnetic-insulator (NM/FI) interface based on the s-d exchange model. Under a certain temperature gradient, the heat current carried by magnons partly flows into the metal, and is partly converted to spin power corresponding to spin current. We find that when the magnon dispersion of the FI (such as yttrium iron garnet) is quadratic, the conversion efficiency of heat current to spin power is about ηs ∼ 0.2ηC with ηC being the Carnot efficiency. The corresponding spin thermopower is roughly Ss ∼ 110 μ V / K . The efficiency and the spin thermopower can be enhanced by opening a gap via, for example, introducing a magnetic field. Effects of temperature in the presence of a gap and dimensionality are also discussed briefly.

  11. Electron spin polarization in strong-field ionization of xenon atoms

    NASA Astrophysics Data System (ADS)

    Hartung, Alexander; Morales, Felipe; Kunitski, Maksim; Henrichs, Kevin; Laucke, Alina; Richter, Martin; Jahnke, Till; Kalinin, Anton; Schöffler, Markus; Schmidt, Lothar Ph. H.; Ivanov, Misha; Smirnova, Olga; Dörner, Reinhard

    2016-08-01

    As a fundamental property of the electron, the spin plays a decisive role in the electronic structure of matter, from solids to molecules and atoms, for example, by causing magnetism. Yet, despite its importance, the spin dynamics of the electrons released during the interaction of atoms with strong ultrashort laser pulses has remained experimentally unexplored. Here, we report the experimental detection of electron spin polarization by the strong-field ionization of xenon atoms and support our results with theoretical analysis. We found up to 30% spin polarization changing its sign with electron energy. This work opens the new dimension of spin to strong-field physics. It paves the way to the production of sub-femtosecond spin-polarized electron pulses with applications ranging from probing the magnetic properties of matter at ultrafast timescales to testing chiral molecular systems with sub-femtosecond temporal and sub-ångström spatial resolutions.

  12. Versatile microwave-driven trapped ion spin system for quantum information processing.

    PubMed

    Piltz, Christian; Sriarunothai, Theeraphot; Ivanov, Svetoslav S; Wölk, Sabine; Wunderlich, Christof

    2016-07-01

    Using trapped atomic ions, we demonstrate a tailored and versatile effective spin system suitable for quantum simulations and universal quantum computation. By simply applying microwave pulses, selected spins can be decoupled from the remaining system and, thus, can serve as a quantum memory, while simultaneously, other coupled spins perform conditional quantum dynamics. Also, microwave pulses can change the sign of spin-spin couplings, as well as their effective strength, even during the course of a quantum algorithm. Taking advantage of the simultaneous long-range coupling between three spins, a coherent quantum Fourier transform-an essential building block for many quantum algorithms-is efficiently realized. This approach, which is based on microwave-driven trapped ions and is complementary to laser-based methods, opens a new route to overcoming technical and physical challenges in the quest for a quantum simulator and a quantum computer. PMID:27419233

  13. Voltage-driven spin-transfer torque in a magnetic particle

    SciTech Connect

    Gartland, P. Davidović, D.

    2015-10-26

    We discuss a spin-transfer torque device, where the role of the soft ferromagnetic layer is played by a magnetic particle or a magnetic molecule, in weak tunnel contact with two spin polarized leads. We investigate if the magnetization of the particle can be manipulated electronically, in the regime where the critical current for magnetization switching is negligibly weak, which could be due to the reduced particle dimensions. Using master equation simulations to evaluate the effects of spin-orbit anisotropy energy fluctuations on spin-transfer, we obtain reliable reading and writing of the magnetization state of such magnetic particle, and find that the device relies on a critical voltage rather than a critical current. The critical voltage is governed by the spin-orbit energy shifts of discrete levels in the particle. This finding opens a possibility to significantly reduce the power dissipation involved in spin-transfer torque switching, by using very small magnetic particles or molecules.

  14. Versatile microwave-driven trapped ion spin system for quantum information processing.

    PubMed

    Piltz, Christian; Sriarunothai, Theeraphot; Ivanov, Svetoslav S; Wölk, Sabine; Wunderlich, Christof

    2016-07-01

    Using trapped atomic ions, we demonstrate a tailored and versatile effective spin system suitable for quantum simulations and universal quantum computation. By simply applying microwave pulses, selected spins can be decoupled from the remaining system and, thus, can serve as a quantum memory, while simultaneously, other coupled spins perform conditional quantum dynamics. Also, microwave pulses can change the sign of spin-spin couplings, as well as their effective strength, even during the course of a quantum algorithm. Taking advantage of the simultaneous long-range coupling between three spins, a coherent quantum Fourier transform-an essential building block for many quantum algorithms-is efficiently realized. This approach, which is based on microwave-driven trapped ions and is complementary to laser-based methods, opens a new route to overcoming technical and physical challenges in the quest for a quantum simulator and a quantum computer.

  15. Quantum spin dynamics with pairwise-tunable, long-range interactions

    PubMed Central

    Hung, C.-L.; González-Tudela, Alejandro; Cirac, J. Ignacio; Kimble, H. J.

    2016-01-01

    We present a platform for the simulation of quantum magnetism with full control of interactions between pairs of spins at arbitrary distances in 1D and 2D lattices. In our scheme, two internal atomic states represent a pseudospin for atoms trapped within a photonic crystal waveguide (PCW). With the atomic transition frequency aligned inside a band gap of the PCW, virtual photons mediate coherent spin–spin interactions between lattice sites. To obtain full control of interaction coefficients at arbitrary atom–atom separations, ground-state energy shifts are introduced as a function of distance across the PCW. In conjunction with auxiliary pump fields, spin-exchange versus atom–atom separation can be engineered with arbitrary magnitude and phase, and arranged to introduce nontrivial Berry phases in the spin lattice, thus opening new avenues for realizing topological spin models. We illustrate the broad applicability of our scheme by explicit construction for several well-known spin models. PMID:27496329

  16. Versatile microwave-driven trapped ion spin system for quantum information processing

    PubMed Central

    Piltz, Christian; Sriarunothai, Theeraphot; Ivanov, Svetoslav S.; Wölk, Sabine; Wunderlich, Christof

    2016-01-01

    Using trapped atomic ions, we demonstrate a tailored and versatile effective spin system suitable for quantum simulations and universal quantum computation. By simply applying microwave pulses, selected spins can be decoupled from the remaining system and, thus, can serve as a quantum memory, while simultaneously, other coupled spins perform conditional quantum dynamics. Also, microwave pulses can change the sign of spin-spin couplings, as well as their effective strength, even during the course of a quantum algorithm. Taking advantage of the simultaneous long-range coupling between three spins, a coherent quantum Fourier transform—an essential building block for many quantum algorithms—is efficiently realized. This approach, which is based on microwave-driven trapped ions and is complementary to laser-based methods, opens a new route to overcoming technical and physical challenges in the quest for a quantum simulator and a quantum computer. PMID:27419233

  17. Spin Funneling for Enhanced Spin Injection into Ferromagnets

    PubMed Central

    Sayed, Shehrin; Diep, Vinh Q.; Camsari, Kerem Yunus; Datta, Supriyo

    2016-01-01

    It is well-established that high spin-orbit coupling (SOC) materials convert a charge current density into a spin current density which can be used to switch a magnet efficiently and there is increasing interest in identifying materials with large spin Hall angle for lower switching current. Using experimentally benchmarked models, we show that composite structures can be designed using existing spin Hall materials such that the effective spin Hall angle is larger by an order of magnitude. The basic idea is to funnel spins from a large area of spin Hall material into a small area of ferromagnet using a normal metal with large spin diffusion length and low resistivity like Cu or Al. We show that this approach is increasingly effective as magnets get smaller. We avoid unwanted charge current shunting by the low resistive NM layer utilizing the newly discovered phenomenon of pure spin conduction in ferromagnetic insulators via magnon diffusion. We provide a spin circuit model for magnon diffusion in FMI that is benchmarked against recent experiments and theory. PMID:27374496

  18. Spin Funneling for Enhanced Spin Injection into Ferromagnets

    NASA Astrophysics Data System (ADS)

    Sayed, Shehrin; Diep, Vinh Q.; Camsari, Kerem Yunus; Datta, Supriyo

    2016-07-01

    It is well-established that high spin-orbit coupling (SOC) materials convert a charge current density into a spin current density which can be used to switch a magnet efficiently and there is increasing interest in identifying materials with large spin Hall angle for lower switching current. Using experimentally benchmarked models, we show that composite structures can be designed using existing spin Hall materials such that the effective spin Hall angle is larger by an order of magnitude. The basic idea is to funnel spins from a large area of spin Hall material into a small area of ferromagnet using a normal metal with large spin diffusion length and low resistivity like Cu or Al. We show that this approach is increasingly effective as magnets get smaller. We avoid unwanted charge current shunting by the low resistive NM layer utilizing the newly discovered phenomenon of pure spin conduction in ferromagnetic insulators via magnon diffusion. We provide a spin circuit model for magnon diffusion in FMI that is benchmarked against recent experiments and theory.

  19. All-electric spin transistor using perpendicular spins

    NASA Astrophysics Data System (ADS)

    Kim, Ji Hoon; Bae, Joohyung; Min, Byoung-Chul; Kim, Hyung-jun; Chang, Joonyeon; Koo, Hyun Cheol

    2016-04-01

    All-electric spin transistor is demonstrated using perpendicular spins in an InAs quantum well channel. For the injection and detection of perpendicular spins in the quantum well channel, we use Tb20Fe62Co18/Co40Fe40B20 electrodes, where the Tb20Fe62Co18 layer produces the perpendicular magnetization and the Co40Fe40B20 layer enhances the spin polarization. In this spin transistor device, a gate-controlled spin signal as large as 80 mΩ is observed at 10 K without an external magnetic field. In order to confirm the spin injection and relaxation independently, we measure the three-terminal Hanle effect with an in-plane magnetic field, and obtain a spin signal of 1.7 mΩ at 10 K. These results clearly present that the electric field is an efficient way to modulate spin orientation in a strong spin-orbit interaction system.

  20. Spin Funneling for Enhanced Spin Injection into Ferromagnets.

    PubMed

    Sayed, Shehrin; Diep, Vinh Q; Camsari, Kerem Yunus; Datta, Supriyo

    2016-01-01

    It is well-established that high spin-orbit coupling (SOC) materials convert a charge current density into a spin current density which can be used to switch a magnet efficiently and there is increasing interest in identifying materials with large spin Hall angle for lower switching current. Using experimentally benchmarked models, we show that composite structures can be designed using existing spin Hall materials such that the effective spin Hall angle is larger by an order of magnitude. The basic idea is to funnel spins from a large area of spin Hall material into a small area of ferromagnet using a normal metal with large spin diffusion length and low resistivity like Cu or Al. We show that this approach is increasingly effective as magnets get smaller. We avoid unwanted charge current shunting by the low resistive NM layer utilizing the newly discovered phenomenon of pure spin conduction in ferromagnetic insulators via magnon diffusion. We provide a spin circuit model for magnon diffusion in FMI that is benchmarked against recent experiments and theory. PMID:27374496

  1. Spin squeezing and entanglement for an arbitrary spin

    NASA Astrophysics Data System (ADS)

    Vitagliano, Giuseppe; Apellaniz, Iagoba; Egusquiza, Iñigo L.; Tóth, Géza

    2014-03-01

    A complete set of generalized spin-squeezing inequalities is derived for an ensemble of particles with an arbitrary spin. Our conditions are formulated with the first and second moments of the collective angular momentum coordinates. A method for mapping the spin-squeezing inequalities for spin-1/2 particles to entanglement conditions for spin-j particles is also presented. We apply our mapping to obtain a generalization of the original spin-squeezing inequality to higher spins. We show that, for large particle numbers, a spin-squeezing parameter for entanglement detection based on one of our inequalities is strictly stronger than the original spin-squeezing parameter defined in Sørensen et al. [Nature (London) 409, 63 (2001), 10.1038/35051038]. We present a coordinate system independent form of our inequalities that contains, besides the correlation and covariance tensors of the collective angular momentum operators, the nematic tensor appearing in the theory of spin nematics. Finally, we discuss how to measure the quantities appearing in our inequalities in experiments.

  2. Spin noise in the anisotropic central spin model

    NASA Astrophysics Data System (ADS)

    Hackmann, Johannes; Anders, Frithjof B.

    2014-01-01

    Spin-noise measurements can serve as a direct probe for the microscopic decoherence mechanism of an electronic spin in semiconductor quantum dots (QDs). We have calculated the spin-noise spectrum in the anisotropic central spin model using a Chebyshev expansion technique which exactly accounts for the dynamics up to an arbitrary long but fixed time in a finite-size system. In the isotropic case, describing QD charge with a single electron, the short-time dynamics is in good agreement with quasistatic approximations for the thermodynamic limit. The spin-noise spectrum, however, shows strong deviations at low frequencies with a power-law behavior of ω-3/4 corresponding to a t-1/4 decay at intermediate and long times. In the Ising limit, applicable to QDs with heavy-hole spins, the spin-noise spectrum exhibits a threshold behavior of (ω-ωL)-1/2 above the Larmor frequency ωL=gμBB. In the generic anisotropic central spin model we have found a crossover from a Gaussian type of spin-noise spectrum to a more Ising-type spectrum with increasing anisotropy in a finite magnetic field. In order to make contact with experiments, we present ensemble averaged spin-noise spectra for QD ensembles charged with single electrons or holes. The Gaussian-type noise spectrum evolves to a more Lorentzian shape spectrum with increasing spread of characteristic time scales and g factors of the individual QDs.

  3. Pure spin current transport in Alq3 by spin pumping

    NASA Astrophysics Data System (ADS)

    Jiang, Shengwei; Wang, Peng; Luan, Zhongzhi; Tao, Xinde; Ding, Haifeng; Wu, Di

    2015-03-01

    The use of organic semiconductors (OSCs) in spintronics has aroused considerable interests, owing to their much longer spin-relaxation times of OSCs than those of inorganic counterparts. The most studied example is the organic spin valve (OSV), in which magnetoresistance (MR) effect is frequently reported. However, studies on pure spin current injection and transport in OSCs are scarce. Recently, the pioneering work by Watanabe et al. demonstrated that pure spin current can be pumped into and propagates in semiconducting polymers. In the present work we extend the study to small molecule OSCs, and demonstrate that pure spin current can be injected into Alq3 from the adjacent magnetic insulator Y3Fe5O12 (YIG) by spin pumping. The pure spin current is detected by inverse spin Hall effect (ISHE) in Pd after propagation through Alq3. From the ISHE voltage VISHE as a function of the Alq3 thickness, the spin diffusion length is determined to be ~ 50 nm and does not depend on temperature. This result indicates the MR decrease as increasing temperature in OSVs is not due to the reduced spin diffusion length.

  4. Electrical control of spin in topological insulators

    NASA Astrophysics Data System (ADS)

    Chang, Kai

    2012-02-01

    by changing the gate voltage. It provides us a new way to control surface magnetism electrically. The gap opened by doped magnetic ions can lead to a short-range Bloembergen-Rowland interaction. The competition among the Heisenberg, Ising, and DM terms leads to rich spin configurations and an anomalous Hall effect on different lattices [4]. There are many proposals for quantum computation scheme are based on the spin in semiconductor quantum dots. Topological insulator quantum dots display a very different behavior with that of conventional semiconductor quantum dots [5]. In sharp contrast to conventional semiconductor quantum dots, the quantum states in the gap of the HgTe QD are fully spin-polarized and show ring-like density distributions near the boundary of the QD and optically dark. The persistent charge currents and magnetic moments, i.e., the Aharonov-Bohm effect, can be observed in such a QD structure. This feature offers us a practical way to detect these exotic ring-like edge states by using the SQUID technique. [0pt]Refs: [1] W. Yang, Kai Chang, and S. C. Zhang, Phys. Rev. Lett. 100, 056602 (2008); J. Li and Kai Chang, Appl. Phys. Lett. 95, 222110 (2009). [2] L. B. Zhang, Kai Chang, X. C. Xie, H. Buhmann and L. W. Molenkamp, New J. Phys. 12, 083058 (2010). [3] L. B. Zhang, F. Cheng, F. Zhai and Kai Chang, Phys. Rev. B 83 081402(R) (2011); Z. H. Wu, F. Zhai, F. M. Peeters, H. Q. Xu and Kai Chang, Phys, Rev. Lett. 106, 176802 (2011). [4] J. J. Zhu, D. X. Yao, S. C. Zhang, and Kai Chang, Phys. Rev. Lett. 106, 097201 (2011). [5] Kai Chang, and Wen-Kai Lou, Phys. Rev. Lett. 106, 206802 (2011).

  5. Esophagectomy - open

    MedlinePlus

    Trans-hiatal esophagectomy; Trans-thoracic esophagectomy; En bloc esophagectomy; Removal of the esophagus - open; Ivor-Lewis esophagectomy, Blunt esophagectomy; Esophageal cancer - esophagectomy - open; Cancer of the esophagus - esophagectomy - open

  6. Entanglement negativity in random spin chains

    NASA Astrophysics Data System (ADS)

    Ruggiero, Paola; Alba, Vincenzo; Calabrese, Pasquale

    2016-07-01

    We investigate the logarithmic negativity in strongly disordered spin chains in the random-singlet phase. We focus on the spin-1/2 random Heisenberg chain and the random X X chain. We find that for two arbitrary intervals, the disorder-averaged negativity and the mutual information are proportional to the number of singlets shared between the two intervals. Using the strong-disorder renormalization group (SDRG), we prove that the negativity of two adjacent intervals grows logarithmically with the intervals' length. In particular, the scaling behavior is the same as in conformal field theory, but with a different prefactor. For two disjoint intervals the negativity is given by a universal simple function of the cross ratio, reflecting scale invariance. As a function of the distance of the two intervals, the negativity decays algebraically in contrast with the exponential behavior in clean models. We confirm our predictions using a numerical implementation of the SDRG method. Finally, we also implement density matrix renormalization group simulations for the negativity in open spin chains. The chains accessible in the presence of strong disorder are not sufficiently long to provide a reliable confirmation of the SDRG results.

  7. Muon spin rotation studies

    NASA Technical Reports Server (NTRS)

    1984-01-01

    The bulk of the muon spin rotation research work centered around the development of the muon spin rotation facility at the Alternating Gradient Synchrotron (AGS) of Brookhaven National Laboratory (BNL). The collimation system was both designed and fabricated at Virginia State University. This improved collimation system, plus improvements in detectors and electronics enabled the acquisition of spectra free of background out to 15 microseconds. There were two runs at Brookhaven in 1984, one run was devoted primarily to beam development and the other run allowed several successful experiments to be performed. The effect of uniaxial strain on an Fe(Si) crystal at elevated temperature (360K) was measured and the results are incorporated herein. A complete analysis of Fe pulling data taken earlier is included.

  8. Spinning superconducting electrovacuum soliton

    NASA Astrophysics Data System (ADS)

    Dymnikova, Irina

    2006-08-01

    In nonlinear electrodynamics coupled to general relativity and satisfying the weak energy condition, a spherically symmetric electrically charged electrovacuum soliton has obligatory de Sitter center in which the electric field vanishes while the energy density of electromagnetic vacuum achieves its maximal value. De Sitter vacuum supplies a particle with the finite positive electromagnetic mass related to breaking of space-time symmetry from the de Sitter group in the origin. By the Gürses-Gürsey algorithm based on the Newman-Trautman technique it is transformed into a spinning electrovacuum soliton asymptotically Kerr-Newman for a distant observer. De Sitter center becomes de Sitter equatorial disk which has both perfect conductor and ideal diamagnetic properties. The interior de Sitter vacuum disk displays superconducting behavior within a single spinning soliton. All this concerns both black hole and particle-like structures.

  9. Spin-driven inflation

    NASA Astrophysics Data System (ADS)

    Obukhov, Yuri N.

    1993-11-01

    Following recent studies of Ford, we suggest - in the framework of general relativity - an inflationary cosmological model with self-interacting spinning matter. A generalization of the standard fluid model is discussed and estimates of the physical parameters of the evolution are given. I would like to thank Professor Friedrich W. Hehl for the careful reading of the manuscript and useful advice. This research was supported by the Alexander von Humboldt Foundation (Bonn).

  10. Dusty spin plasmas

    SciTech Connect

    Brodin, G.; Marklund, M.; Zamanian, J.

    2008-09-07

    A fluid model is derived, taking into account the effect of spin magnetization of electrons as well as of magnetized dust grains. The model is analyzed, and it is found that both the acoustic velocity and the Alfven velocity is decreased due to the magnetization effects. Furthermore, for low-temperature high density plasmas, it is found that the linear wave modes can be unstable, due to the magnetic attraction of individual fluid elements. The significance of our results are discussed.

  11. Spin and gravitation

    NASA Technical Reports Server (NTRS)

    Ray, J. R.

    1982-01-01

    The fundamental variational principle for a perfect fluid in general relativity is extended so that it applies to the metric-torsion Einstein-Cartan theory. Field equations for a perfect fluid in the Einstein-Cartan theory are deduced. In addition, the equations of motion for a fluid with intrinsic spin in general relativity are deduced from a special relativistic variational principle. The theory is a direct extension of the theory of nonspinning fluids in special relativity.

  12. Horizontal SPINning of transposons.

    PubMed

    Gilbert, Clément; Pace, John K; Feschotte, Cédric

    2009-01-01

    The term 'horizontal transfer (HT)' refers to the transfer of genetic material between two reproductively isolated organisms. HT is thought to occur rarely in eukaryotes compared to vertical inheritance, the transmission of DNA from parent to offspring. In a recent study we have provided evidence that a family of DNA transposons, called SPACE INVADERS or SPIN, independently invaded horizontally the genome of seven distantly related tetrapod species and subsequently amplified to high copy number in each of them. This discovery calls for further investigations to better characterize the extent to which genomes have been shaped through HT events. In this addendum, we briefly discuss some general issues regarding the study of HT and further speculate on the sequence of events that could explain the current taxonomic distribution of SPIN. We propose that the presence of SPIN in the opossum (Monodelphis domestica), a taxon endemic to South America, reflects a transoceanic HT event that occurred from Old to New World, between 46 and 15 million years ago.

  13. Nuclear spin circular dichroism

    SciTech Connect

    Vaara, Juha; Rizzo, Antonio; Kauczor, Joanna; Norman, Patrick; Coriani, Sonia

    2014-04-07

    Recent years have witnessed a growing interest in magneto-optic spectroscopy techniques that use nuclear magnetization as the source of the magnetic field. Here we present a formulation of magnetic circular dichroism (CD) due to magnetically polarized nuclei, nuclear spin-induced CD (NSCD), in molecules. The NSCD ellipticity and nuclear spin-induced optical rotation (NSOR) angle correspond to the real and imaginary parts, respectively, of (complex) quadratic response functions involving the dynamic second-order interaction of the electron system with the linearly polarized light beam, as well as the static magnetic hyperfine interaction. Using the complex polarization propagator framework, NSCD and NSOR signals are obtained at frequencies in the vicinity of optical excitations. Hartree-Fock and density-functional theory calculations on relatively small model systems, ethene, benzene, and 1,4-benzoquinone, demonstrate the feasibility of the method for obtaining relatively strong nuclear spin-induced ellipticity and optical rotation signals. Comparison of the proton and carbon-13 signals of ethanol reveals that these resonant phenomena facilitate chemical resolution between non-equivalent nuclei in magneto-optic spectra.

  14. Duality Between Spin Networks and the 2D Ising Model

    NASA Astrophysics Data System (ADS)

    Bonzom, Valentin; Costantino, Francesco; Livine, Etera R.

    2016-06-01

    The goal of this paper is to exhibit a deep relation between the partition function of the Ising model on a planar trivalent graph and the generating series of the spin network evaluations on the same graph. We provide respectively a fermionic and a bosonic Gaussian integral formulation for each of these functions and we show that they are the inverse of each other (up to some explicit constants) by exhibiting a supersymmetry relating the two formulations. We investigate three aspects and applications of this duality. First, we propose higher order supersymmetric theories that couple the geometry of the spin networks to the Ising model and for which supersymmetric localization still holds. Secondly, after interpreting the generating function of spin network evaluations as the projection of a coherent state of loop quantum gravity onto the flat connection state, we find the probability distribution induced by that coherent state on the edge spins and study its stationary phase approximation. It is found that the stationary points correspond to the critical values of the couplings of the 2D Ising model, at least for isoradial graphs. Third, we analyze the mapping of the correlations of the Ising model to spin network observables, and describe the phase transition on those observables on the hexagonal lattice. This opens the door to many new possibilities, especially for the study of the coarse-graining and continuum limit of spin networks in the context of quantum gravity.

  15. Quenched Slonczewski windmill in spin-torque vortex oscillators

    NASA Astrophysics Data System (ADS)

    Sluka, V.; Kákay, A.; Deac, A. M.; Bürgler, D. E.; Hertel, R.; Schneider, C. M.

    2012-12-01

    We present a combined analytical and numerical study on double-vortex spin-torque nano-oscillators and describe a mechanism that suppresses the windmill modes. The magnetization dynamics is dominated by the gyrotropic precession of the vortex in one of the ferromagnetic layers. In the other layer, the vortex gyration is strongly damped. The dominating layer for the magnetization dynamics is determined by the sign of the product between sample current and the chiralities. Measurements on Fe/Ag/Fe nanopillars support these findings. The results open up a new perspective for building high quality-factor spin-torque oscillators operating at selectable, well-separated frequency bands.

  16. Quantum phase transition in dimerised spin-1/2 chains

    NASA Astrophysics Data System (ADS)

    Das, Aparajita; Bhadra, Sreeparna; Saha, Sonali

    2015-11-01

    Quantum phase transition in dimerised antiferromagnetic Heisenberg spin chain has been studied. A staircase structure in the variation of concurrence within strongly coupled pairs with that of external magnetic field has been observed indicating multiple critical (or critical like) points. Emergence of entanglement due to external magnetic field or magnetic entanglement is observed for weakly coupled spin pairs too in the same dimer chain. Though closed dimerised isotropic XXX Heisenberg chains with different dimer strengths were mainly explored, analogous studies on open chains as well as closed anisotropic (XX interaction) chains with tilted external magnetic field have also been studied.

  17. Spin-bus concept of spin quantum computing

    SciTech Connect

    Mehring, Michael; Mende, Jens

    2006-05-15

    We present a spin-bus concept of quantum computing where an electron spin S=1/2 acts as a bus qubit connected to a finite number N of nuclear spins I=1/2 serving as client qubits. Spin-bus clusters are considered as local processing units and may be interconnected with other spin-bus clusters via electron-electron coupling in a scaled up version. Here we lay the ground for the basic functional unit with long qubit registers, provide the theory and experimental verification of correlated qubit states, and demonstrate the Deutsch algorithm. Experiments were performed on a qubyte plus one nuclear spin in a solid state system.

  18. FAST AND EXACT SPIN-s SPHERICAL HARMONIC TRANSFORMS

    SciTech Connect

    Huffenberger, Kevin M.; Wandelt, Benjamin D.

    2010-08-15

    We demonstrate a fast spin-s spherical harmonic transform algorithm, which is flexible and exact for band-limited functions. In contrast to previous work, where spin transforms are computed independently, our algorithm permits the computation of several distinct spin transforms simultaneously. Specifically, only one set of special functions is computed for transforms of quantities with any spin, namely the Wigner d matrices evaluated at {pi}/2, which may be computed with efficient recursions. For any spin, the computation scales as O(L{sup 3}), where L is the band limit of the function. Our publicly available numerical implementation permits very high accuracy at modest computational cost. We discuss applications to the cosmic microwave background and gravitational lensing.

  19. Coherent ultrafast spin-dynamics probed in three dimensional topological insulators.

    PubMed

    Boschini, F; Mansurova, M; Mussler, G; Kampmeier, J; Grützmacher, D; Braun, L; Katmis, F; Moodera, J S; Dallera, C; Carpene, E; Franz, C; Czerner, M; Heiliger, C; Kampfrath, T; Münzenberg, M

    2015-10-29

    Topological insulators are candidates to open up a novel route in spin based electronics. Different to traditional ferromagnetic materials, where the carrier spin-polarization and magnetization are based on the exchange interaction, the spin properties in topological insulators are based on the coupling of spin- and orbit interaction connected to its momentum. Specific ways to control the spin-polarization with light have been demonstrated: the energy momentum landscape of the Dirac cone provides spin-momentum locking of the charge current and its spin. We investigate a spin-related signal present only during the laser excitation studying real and imaginary part of the complex Kerr angle by disentangling spin and lattice contributions. This coherent signal is only present at the time of the pump-pulses' light field and can be described in terms of a Raman coherence time. The Raman transition involves states at the bottom edge of the conduction band. We demonstrate a coherent femtosecond control of spin-polarization for electronic states at around the Dirac cone.

  20. Coherent ultrafast spin-dynamics probed in three dimensional topological insulators

    PubMed Central

    Boschini, F.; Mansurova, M.; Mussler, G.; Kampmeier, J.; Grützmacher, D.; Braun, L.; Katmis, F.; Moodera, J. S.; Dallera, C.; Carpene, E.; Franz, C.; Czerner, M.; Heiliger, C.; Kampfrath, T.; Münzenberg, M.

    2015-01-01

    Topological insulators are candidates to open up a novel route in spin based electronics. Different to traditional ferromagnetic materials, where the carrier spin-polarization and magnetization are based on the exchange interaction, the spin properties in topological insulators are based on the coupling of spin- and orbit interaction connected to its momentum. Specific ways to control the spin-polarization with light have been demonstrated: the energy momentum landscape of the Dirac cone provides spin-momentum locking of the charge current and its spin. We investigate a spin-related signal present only during the laser excitation studying real and imaginary part of the complex Kerr angle by disentangling spin and lattice contributions. This coherent signal is only present at the time of the pump-pulses’ light field and can be described in terms of a Raman coherence time. The Raman transition involves states at the bottom edge of the conduction band. We demonstrate a coherent femtosecond control of spin-polarization for electronic states at around the Dirac cone. PMID:26510509

  1. Spin-texture inversion in the giant Rashba semiconductor BiTeI.

    PubMed

    Maaß, Henriette; Bentmann, Hendrik; Seibel, Christoph; Tusche, Christian; Eremeev, Sergey V; Peixoto, Thiago R F; Tereshchenko, Oleg E; Kokh, Konstantin A; Chulkov, Evgueni V; Kirschner, Jürgen; Reinert, Friedrich

    2016-01-01

    Semiconductors with strong spin-orbit interaction as the underlying mechanism for the generation of spin-polarized electrons are showing potential for applications in spintronic devices. Unveiling the full spin texture in momentum space for such materials and its relation to the microscopic structure of the electronic wave functions is experimentally challenging and yet essential for exploiting spin-orbit effects for spin manipulation. Here we employ a state-of-the-art photoelectron momentum microscope with a multichannel spin filter to directly image the spin texture of the layered polar semiconductor BiTeI within the full two-dimensional momentum plane. Our experimental results, supported by relativistic ab initio calculations, demonstrate that the valence and conduction band electrons in BiTeI have spin textures of opposite chirality and of pronounced orbital dependence beyond the standard Rashba model, the latter giving rise to strong optical selection-rule effects on the photoelectron spin polarization. These observations open avenues for spin-texture manipulation by atomic-layer and charge carrier control in polar semiconductors. PMID:27188584

  2. Spin-texture inversion in the giant Rashba semiconductor BiTeI

    NASA Astrophysics Data System (ADS)

    Maaß, Henriette; Bentmann, Hendrik; Seibel, Christoph; Tusche, Christian; Eremeev, Sergey V.; Peixoto, Thiago R. F.; Tereshchenko, Oleg E.; Kokh, Konstantin A.; Chulkov, Evgueni V.; Kirschner, Jürgen; Reinert, Friedrich

    2016-05-01

    Semiconductors with strong spin-orbit interaction as the underlying mechanism for the generation of spin-polarized electrons are showing potential for applications in spintronic devices. Unveiling the full spin texture in momentum space for such materials and its relation to the microscopic structure of the electronic wave functions is experimentally challenging and yet essential for exploiting spin-orbit effects for spin manipulation. Here we employ a state-of-the-art photoelectron momentum microscope with a multichannel spin filter to directly image the spin texture of the layered polar semiconductor BiTeI within the full two-dimensional momentum plane. Our experimental results, supported by relativistic ab initio calculations, demonstrate that the valence and conduction band electrons in BiTeI have spin textures of opposite chirality and of pronounced orbital dependence beyond the standard Rashba model, the latter giving rise to strong optical selection-rule effects on the photoelectron spin polarization. These observations open avenues for spin-texture manipulation by atomic-layer and charge carrier control in polar semiconductors.

  3. Spin-texture inversion in the giant Rashba semiconductor BiTeI.

    PubMed

    Maaß, Henriette; Bentmann, Hendrik; Seibel, Christoph; Tusche, Christian; Eremeev, Sergey V; Peixoto, Thiago R F; Tereshchenko, Oleg E; Kokh, Konstantin A; Chulkov, Evgueni V; Kirschner, Jürgen; Reinert, Friedrich

    2016-05-18

    Semiconductors with strong spin-orbit interaction as the underlying mechanism for the generation of spin-polarized electrons are showing potential for applications in spintronic devices. Unveiling the full spin texture in momentum space for such materials and its relation to the microscopic structure of the electronic wave functions is experimentally challenging and yet essential for exploiting spin-orbit effects for spin manipulation. Here we employ a state-of-the-art photoelectron momentum microscope with a multichannel spin filter to directly image the spin texture of the layered polar semiconductor BiTeI within the full two-dimensional momentum plane. Our experimental results, supported by relativistic ab initio calculations, demonstrate that the valence and conduction band electrons in BiTeI have spin textures of opposite chirality and of pronounced orbital dependence beyond the standard Rashba model, the latter giving rise to strong optical selection-rule effects on the photoelectron spin polarization. These observations open avenues for spin-texture manipulation by atomic-layer and charge carrier control in polar semiconductors.

  4. Silicene-based spin-filter device: impact of random vacancies

    NASA Astrophysics Data System (ADS)

    Núñez, C.; Domínguez-Adame, F.; Orellana, P. A.; Rosales, L.; Römer, R. A.

    2016-06-01

    We propose a hybrid spin-filter device based on a silicene nanoribbon. A ferroelectric polymer grown on top of the nanoribbon splits spin-up and spin-down electron bands and gives rise to a spin polarisation of the conductance. In particular, we study the effects of a random distribution of vacancies on the performance of this spin-filter device. Disorder induces Anderson localisation of electrons and we find that the localisation length strongly depends on the electron spin. By adjusting the Fermi level of the source contact, only electrons with one spin orientation can reach the drain contact because their localisation length is larger than the length of the device. Electrons with opposite spin are largely back-reflected. Electric conductance then becomes spin polarised and the device behaves as a quasi-half-metal. We conclude that a moderate concentration of vacancies has little impact on the spin-filter capabilities of the device, opening the possibility to using it as a tuneable source of polarised electrons.

  5. Spin pumping through a topological insulator probed by x-ray detected ferromagnetic resonance

    NASA Astrophysics Data System (ADS)

    Figueroa, A. I.; Baker, A. A.; Collins-McIntyre, L. J.; Hesjedal, T.; van der Laan, G.

    2016-02-01

    In the field of spintronics, the generation of a pure spin current (without macroscopic charge flow) through spin pumping of a ferromagnetic (FM) layer opens up the perspective of a new generation of dissipation-less devices. Microwave driven ferromagnetic resonance (FMR) can generate a pure spin current that enters adjacent layers, allowing for both magnetization reversal (through spin-transfer torque) and to probe spin coherence in non-magnetic materials. However, standard FMR is unable to probe multilayer dynamics directly, since the measurement averages over the contributions from the whole system. The synchrotron radiation-based technique of x-ray detected FMR (XFMR) offers an elegant solution to this drawback, giving access to element-, site-, and layer-specific dynamical measurements in heterostructures. In this work, we show how XFMR has provided unique information to understand spin pumping and spin transfer torque effects through a topological insulator (TI) layer in a pseudo-spin valve heterostructure. We demonstrate that TIs function as efficient spin sinks, while also allowing a limited dynamic coupling between ferromagnetic layers. These results shed new light on the spin dynamics of this novel class of materials, and suggest future directions for the development of room temperature TI-based spintronics.

  6. Coherent spin mixing dynamics in a spin-1 atomic condensate

    SciTech Connect

    Zhang Wenxian; Chang, M.-S.; Chapman, M.S.; Zhou, D.L.; You, L.

    2005-07-15

    We study the coherent off-equilibrium spin mixing inside an atomic condensate. Using mean-field theory and adopting the single-spatial-mode approximation, the condensate spin dynamics is found to be well described by that of a nonrigid pendulum and displays a variety of periodic oscillations in an external magnetic field. Our results illuminate several recent experimental observations and provide critical insights into the observation of coherent interaction-driven oscillations in a spin-1 condensate.

  7. Decoupling a hole spin qubit from the nuclear spins

    NASA Astrophysics Data System (ADS)

    Prechtel, Jonathan H.; Kuhlmann, Andreas V.; Houel, Julien; Ludwig, Arne; Valentin, Sascha R.; Wieck, Andreas D.; Warburton, Richard J.

    2016-09-01

    A huge effort is underway to develop semiconductor nanostructures as low-noise hosts for qubits. The main source of dephasing of an electron spin qubit in a GaAs-based system is the nuclear spin bath. A hole spin may circumvent the nuclear spin noise. In principle, the nuclear spins can be switched off for a pure heavy-hole spin. In practice, it is unknown to what extent this ideal limit can be achieved. A major hindrance is that p-type devices are often far too noisy. We investigate here a single hole spin in an InGaAs quantum dot embedded in a new generation of low-noise p-type device. We measure the hole Zeeman energy in a transverse magnetic field with 10 neV resolution by dark-state spectroscopy as we create a large transverse nuclear spin polarization. The hole hyperfine interaction is highly anisotropic: the transverse coupling is <1% of the longitudinal coupling. For unpolarized, randomly fluctuating nuclei, the ideal heavy-hole limit is achieved down to nanoelectronvolt energies; equivalently dephasing times up to a microsecond. The combination of large and strong optical dipole makes the single hole spin in a GaAs-based device an attractive quantum platform.

  8. Correlation functions of the integrable spin-s chain

    NASA Astrophysics Data System (ADS)

    Ribeiro, G. A. P.; Klümper, A.

    2016-06-01

    We study the correlation functions of su(2) invariant spin-s chains in the thermodynamic limit. We derive nonlinear integral equations for an auxiliary correlation function ω for any spin s and finite temperature T. For the spin-3/2 chain for arbitrary temperature and zero magnetic field we obtain algebraic expressions for the reduced density matrix of two-sites. In the zero temperature limit, the density matrix elements are evaluated analytically and appear to be given in terms of Riemann’s zeta function values of even and odd arguments. Dedicated to Professor Rodney Baxter on the occasion of his 75th birthday.

  9. Chiral spin liquids in arrays of spin chains

    NASA Astrophysics Data System (ADS)

    Gorohovsky, Gregory; Pereira, Rodrigo G.; Sela, Eran

    2015-06-01

    We describe a coupled-chain construction for chiral spin liquids in two-dimensional spin systems. Starting from a one-dimensional zigzag spin chain and imposing SU(2) symmetry in the framework of non-Abelian bosonization, we first show that our approach faithfully describes the low-energy physics of an exactly solvable model with a three-spin interaction. Generalizing the construction to the two-dimensional case, we obtain a theory that incorporates the universal properties of the chiral spin liquid predicted by Kalmeyer and Laughlin: charge-neutral edge states, gapped spin-1/2 bulk excitations, and ground-state degeneracy on the torus signaling the topological order of this quantum state. In addition, we show that the chiral spin liquid phase is more easily stabilized in frustrated lattices containing corner-sharing triangles, such as the extended kagome lattice, than in the triangular lattice. Our field-theoretical approach invites generalizations to more exotic chiral spin liquids and may be used to assess the existence of the chiral spin liquid as the ground state of specific lattice systems.

  10. Valley-spin blockade and spin resonance in carbon nanotubes.

    PubMed

    Pei, Fei; Laird, Edward A; Steele, Gary A; Kouwenhoven, Leo P

    2012-10-01

    The manipulation and readout of spin qubits in quantum dots have been successfully achieved using Pauli blockade, which forbids transitions between spin-triplet and spin-singlet states. Compared with spin qubits realized in III-V materials, group IV materials such as silicon and carbon are attractive for this application because of their low decoherence rates (nuclei with zero spins). However, valley degeneracies in the electronic band structure of these materials combined with Coulomb interactions reduce the energy difference between the blocked and unblocked states, significantly weakening the selection rules for Pauli blockade. Recent demonstrations of spin qubits in silicon devices have required strain and spatial confinement to lift the valley degeneracy. In carbon nanotubes, Pauli blockade can be observed by lifting valley degeneracy through disorder, but this makes the confinement potential difficult to control. To achieve Pauli blockade in low-disorder nanotubes, quantum dots have to be made ultrasmall, which is incompatible with conventional fabrication methods. Here, we exploit the bandgap of low-disorder nanotubes to demonstrate robust Pauli blockade based on both valley and spin selection rules. We use a novel stamping technique to create a bent nanotube, in which single-electron spin resonance is detected using the blockade. Our results indicate the feasibility of valley-spin qubits in carbon nanotubes.

  11. Association of Toll-like receptor 2 Arg753Gln and Toll-like receptor 1 Ile602Ser single-nucleotide polymorphisms with leptospirosis in an Argentine population.

    PubMed

    Cédola, Maia; Chiani, Yosena; Pretre, Gabriela; Alberdi, Lucrecia; Vanasco, Bibiana; Gómez, Ricardo M

    2015-06-01

    Toll-like receptor 2 (TLR2), a member of the Toll-like receptor family, plays an important role in the recognition of and subsequent immune response activation against leptospirosis in humans. The genetic polymorphism in TLR2 of an arginine to glutamine substitution at residue 753 (Arg753Gln) has been associated with a negative influence on TLR2 function, which may, in turn, determine the innate host response to Leptospira spp. This bacterium signals through TLR2/TLR1 heterodimers in human cells. The aim of the present study was to investigate the Arg753Gln single-nucleotide polymorphism (SNP) of the TLR2 gene, and the isoleucine to serine transversion at position 602 (Ile602Ser) of the TLR1 gene (previously associated with Lyme disease), in leptospirosis patients compared to healthy controls, carrying out a retrospective case/control study. The TLR2 polymorphism adenine (A) allele was observed in 7.3% of leptospirosis patients but was not found in the control group, whereas the guanine (G) allele of the TLR1 polymorphism was found in 63.6% of patients and 41.6% of controls. Susceptibility to leptospirosis disease was increased 10.57-fold for carriers of the TLR2 G/A genotype (P=0.0493) and 3.85-fold for carriers of the TLR1 G/G genotype (P=0.0428). Furthermore, the risk of developing hepatic insufficiency and jaundice was increased 18.86- and 27.60-fold for TLR2 G/A carriers, respectively. Similarly, the risk of developing jaundice was increased 12.67-fold for TLR1 G allele carriers (G/G and T/G genotypes). In conclusion, the present data suggest that the TLR2 Arg753Gln and TLR1 Ile602Ser SNPs influence the risk of developing leptospirosis and its severity.

  12. A robust phylogenetic framework for the bacterial genus Photorhabdus and its use in studying the evolution and maintenance of bioluminescence: a case for 16S, gyrB, and glnA.

    PubMed

    Peat, Scott M; Ffrench-Constant, Richard H; Waterfield, Nick R; Marokházi, Judit; Fodor, Andras; Adams, Byron J

    2010-11-01

    Photorhabdus spp., the only known bioluminescent terrestrial bacteria are well known for their symbiotic association with heterorhabditid nematodes. This association, along with their ability to kill insects, has aroused interest in the evolutionary relationships within this bacterial group. Currently, three species are recognized within the genus Photorhabdus; P. temperata and P. luminescens, which are endosymbionts of Heterorhabditis spp., and P. asymbiotica, which has been isolated from human wounds and has recently been shown to also have a heterorhabditid nematode vector. To examine phylogenetic relationships among these taxa, we utilize total evidence Bayesian, likelihood, and parsimony based analyses of three genetic loci (16S rRNA gene, gyrB, and glnA) to construct a robust evolutionary hypothesis for the genus Photorhabdus. Here we use this phylogeny to evaluate existing specific and sub-specific taxonomic statements within the genus, identify previously undescribed Photorhabdus strains, test the utility of 16S rRNA gene, gyrB, and glnA in resolving various levels of relationships within the genus, and, finally, to investigate the evolution of bioluminescence. The genes examined produced the most robust phylogenetic hypothesis to date for the genus Photorhabdus, as indicated by strong bootstrap and posterior probability values at previously unresolved or poorly resolved nodes. We show that glnA is particularly useful in resolving specific and intra-specific relationships poorly resolved in other studies. We conclude that P. asymbiotica is the sister group to P. luminescens and that the new strains HIT and JUN should be given a new group designation within P. asymbiotica. Furthermore, we reveal a pattern of decline in bioluminescent intensity through the evolution of Photorhabdus, suggesting that this may be a trait acquired and maintained under previous ecological (aquatic) selection pressures that is now gradually being lost in its terrestrial environment

  13. Semicircular Rashba arc spin polarizer

    SciTech Connect

    Bin Siu, Zhuo; Jalil, Mansoor B. A.; Ghee Tan, Seng

    2014-05-07

    In this work, we study the generation of spin polarized currents using curved arcs of finite widths, in which the Rashba spin orbit interaction (RSOI) is present. Compared to the 1-dimensional RSOI arcs with zero widths studied previously, the finite width presents charge carriers with another degree of freedom along the transverse width of the arc, in addition to the longitudinal degree of freedom along the circumference of the arc. The asymmetry in the transverse direction due to the difference in the inner and outer radii of the arc breaks the antisymmetry of the longitudinal spin z current in a straight RSOI segment. This property can be exploited to generate spin z polarized current output from the RSOI arc by a spin unpolarized current input. The sign of the spin current can be manipulated by varying the arc dimensions.

  14. Inductance due to spin current

    SciTech Connect

    Chen, Wei

    2014-03-21

    The inductance of spintronic devices that transport charge neutral spin currents is discussed. It is known that in a media that contains charge neutral spins, a time-varying electric field induces a spin current. We show that since the spin current itself produces an electric field, this implies existence of inductance and electromotive force when the spin current changes with time. The relations between the electromotive force and the corresponding flux, which is a vector calculated by the cross product of electric field and the trajectory of the device, are clarified. The relativistic origin generally renders an extremely small inductance, which indicates the advantage of spin current in building low inductance devices. The same argument also explains the inductance due to electric dipole current and applies to physical dipoles consist of polarized bound charges.

  15. Parameters of spinning FM reticles.

    PubMed

    Driggers, R G; Halford, C E; Boreman, G D; Lattman, D; Williams, K F

    1991-03-01

    The literature describes tracking devices that allow a single detector coupled to a spinning FM reticle to determine target location. The spinning FM reticles presented were limited to single parameter reticles of frequency vs angle, frequency vs radius, or phase. This study presents these parameters with their capabilities and limitations and shows that multiple parameters can be integrated into a single reticle. Also, a general equation is developed that describes any FM reticle of the spinning type. PMID:20582075

  16. Understanding the proton's spin structure

    SciTech Connect

    Fred Myhrer; Thomas, Anthony W.

    2010-02-01

    We discuss the tremendous progress that has been towards an understanding of how the spin of the proton is distributed on its quark and gluon constituents. This is a problem that began in earnest twenty years ago with the discovery of the proton "spin crisis" by the European Muon Collaboration. The discoveries prompted by that original work have given us unprecedented insight into the amount of spin carried by polarized gluons and the orbital angular momentum of the quarks.

  17. The appearance of a switch in orbital texture and the resulting absence of complete spin polarization in a Rashba semiconductor

    NASA Astrophysics Data System (ADS)

    Liu, Qihang; Zhang, Xiuwen; Zunger, Alex

    We consider spin-orbit coupling (SOC) induced spin splitting and spin polarization in nonmagnetic bulk materials lacking inversion symmetry, in which a pair of side-by-side bands that cross at some wavevector K is formed. We find that (i) even though in the semi-classical single-electron model the two bands manifest complete spin polarization, we find via density functional theory and k p modeling that SOC-induced spin splitting in real materials does not necessarily manifest complete spin polarization. (ii) Away from band crossing point K and looking at the same wavevector, the spin polarization in different branches does not compensate each other. When considering the full pair of spin-split bands this leads to a net spin texture. We explain this unexpected phenomenon and find that the key factor here is the complex interplay between spin and orbital textures entangled by SOC. (iii) In surprising analogy to the surface states of topological insulators (such as Bi2Se3) , a bulk Rashba compound (such as BiTeI) also exhibits a switch of in-plane orbital character between radial and tangential orbital at the critical band crossing point K. These observations provide a different thinking on the fundamental concept of SOC-induced spin polarization, and opens a new route for manipulating spin degree of freedom by the atomic-orbital feature. This work was supported by National Science Foundation (Grant DMREF-13-34170).

  18. 14 CFR 23.221 - Spinning.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 14 Aeronautics and Space 1 2013-01-01 2013-01-01 false Spinning. 23.221 Section 23.221 Aeronautics... STANDARDS: NORMAL, UTILITY, ACROBATIC, AND COMMUTER CATEGORY AIRPLANES Flight Spinning § 23.221 Spinning. (a...-turn spin or a three-second spin, whichever takes longer, in not more than one additional turn...

  19. 14 CFR 23.221 - Spinning.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 14 Aeronautics and Space 1 2011-01-01 2011-01-01 false Spinning. 23.221 Section 23.221 Aeronautics... STANDARDS: NORMAL, UTILITY, ACROBATIC, AND COMMUTER CATEGORY AIRPLANES Flight Spinning § 23.221 Spinning. (a...-turn spin or a three-second spin, whichever takes longer, in not more than one additional turn...

  20. 14 CFR 23.221 - Spinning.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 14 Aeronautics and Space 1 2010-01-01 2010-01-01 false Spinning. 23.221 Section 23.221 Aeronautics... STANDARDS: NORMAL, UTILITY, ACROBATIC, AND COMMUTER CATEGORY AIRPLANES Flight Spinning § 23.221 Spinning. (a...-turn spin or a three-second spin, whichever takes longer, in not more than one additional turn...

  1. The straintronic spin-neuron.

    PubMed

    Biswas, Ayan K; Atulasimha, Jayasimha; Bandyopadhyay, Supriyo

    2015-07-17

    In artificial neural networks, neurons are usually implemented with highly dissipative CMOS-based operational amplifiers. A more energy-efficient implementation is a 'spin-neuron' realized with a magneto-tunneling junction (MTJ) that is switched with a spin-polarized current (representing weighted sum of input currents) that either delivers a spin transfer torque or induces domain wall motion in the soft layer of the MTJ to mimic neuron firing. Here, we propose and analyze a different type of spin-neuron in which the soft layer of the MTJ is switched with mechanical strain generated by a voltage (representing weighted sum of input voltages) and term it straintronic spin-neuron. It dissipates orders of magnitude less energy in threshold operations than the traditional current-driven spin neuron at 0 K temperature and may even be faster. We have also studied the room-temperature firing behaviors of both types of spin neurons and find that thermal noise degrades the performance of both types, but the current-driven type is degraded much more than the straintronic type if both are optimized for maximum energy-efficiency. On the other hand, if both are designed to have the same level of thermal degradation, then the current-driven version will dissipate orders of magnitude more energy than the straintronic version. Thus, the straintronic spin-neuron is superior to current-driven spin neurons. PMID:26112081

  2. Alkali-Metal Spin Maser.

    PubMed

    Chalupczak, W; Josephs-Franks, P

    2015-07-17

    Quantum measurement is a combination of a read-out and a perturbation of the quantum system. We explore the nonlinear spin dynamics generated by a linearly polarized probe beam in a continuous measurement of the collective spin state in a thermal alkali-metal atomic sample. We demonstrate that the probe-beam-driven perturbation leads, in the presence of indirect pumping, to complete polarization of the sample and macroscopic coherent spin oscillations. As a consequence of the former we report observation of spectral profiles free from collisional broadening. Nonlinear dynamics is studied through exploring its effect on radio frequency as well as spin noise spectra. PMID:26230788

  3. The straintronic spin-neuron

    NASA Astrophysics Data System (ADS)

    Biswas, Ayan K.; Atulasimha, Jayasimha; Bandyopadhyay, Supriyo

    2015-07-01

    In artificial neural networks, neurons are usually implemented with highly dissipative CMOS-based operational amplifiers. A more energy-efficient implementation is a ‘spin-neuron’ realized with a magneto-tunneling junction (MTJ) that is switched with a spin-polarized current (representing weighted sum of input currents) that either delivers a spin transfer torque or induces domain wall motion in the soft layer of the MTJ to mimic neuron firing. Here, we propose and analyze a different type of spin-neuron in which the soft layer of the MTJ is switched with mechanical strain generated by a voltage (representing weighted sum of input voltages) and term it straintronic spin-neuron. It dissipates orders of magnitude less energy in threshold operations than the traditional current-driven spin neuron at 0 K temperature and may even be faster. We have also studied the room-temperature firing behaviors of both types of spin neurons and find that thermal noise degrades the performance of both types, but the current-driven type is degraded much more than the straintronic type if both are optimized for maximum energy-efficiency. On the other hand, if both are designed to have the same level of thermal degradation, then the current-driven version will dissipate orders of magnitude more energy than the straintronic version. Thus, the straintronic spin-neuron is superior to current-driven spin neurons.

  4. The straintronic spin-neuron.

    PubMed

    Biswas, Ayan K; Atulasimha, Jayasimha; Bandyopadhyay, Supriyo

    2015-07-17

    In artificial neural networks, neurons are usually implemented with highly dissipative CMOS-based operational amplifiers. A more energy-efficient implementation is a 'spin-neuron' realized with a magneto-tunneling junction (MTJ) that is switched with a spin-polarized current (representing weighted sum of input currents) that either delivers a spin transfer torque or induces domain wall motion in the soft layer of the MTJ to mimic neuron firing. Here, we propose and analyze a different type of spin-neuron in which the soft layer of the MTJ is switched with mechanical strain generated by a voltage (representing weighted sum of input voltages) and term it straintronic spin-neuron. It dissipates orders of magnitude less energy in threshold operations than the traditional current-driven spin neuron at 0 K temperature and may even be faster. We have also studied the room-temperature firing behaviors of both types of spin neurons and find that thermal noise degrades the performance of both types, but the current-driven type is degraded much more than the straintronic type if both are optimized for maximum energy-efficiency. On the other hand, if both are designed to have the same level of thermal degradation, then the current-driven version will dissipate orders of magnitude more energy than the straintronic version. Thus, the straintronic spin-neuron is superior to current-driven spin neurons.

  5. Alkali-Metal Spin Maser

    NASA Astrophysics Data System (ADS)

    Chalupczak, W.; Josephs-Franks, P.

    2015-07-01

    Quantum measurement is a combination of a read-out and a perturbation of the quantum system. We explore the nonlinear spin dynamics generated by a linearly polarized probe beam in a continuous measurement of the collective spin state in a thermal alkali-metal atomic sample. We demonstrate that the probe-beam-driven perturbation leads, in the presence of indirect pumping, to complete polarization of the sample and macroscopic coherent spin oscillations. As a consequence of the former we report observation of spectral profiles free from collisional broadening. Nonlinear dynamics is studied through exploring its effect on radio frequency as well as spin noise spectra.

  6. RHIC spin program

    SciTech Connect

    Bunce, G.

    1995-12-31

    Colliding beams of high energy polarized protons at RHIC is an excellent way to probe the polarization of gluons, u and d quarks in a polarized proton. RHIC is the Relativistic Heavy Ion Collider being built now at Brookhaven in the ISABELLE tunnel. It is designed to collide gold ions on gold ions at 100 GeV/nucleon. Its goal is to discover the quark-gluon plasma, and the first collisions are expected in March, 1999. RHIC will also make an ideal polarized proton collider with high luminosity and 250 GeV x 250 GeV collisions. The RHIC spin physics program is: (1) Use well-understood perturbative QCD probes to study non-perturbative confining dynamics in QCD. We will measure - gluon and sea quark polarization in a polarized proton, polarization of quarks in a transversely polarized proton. (2) Look for additional surprises using the first high energy polarized proton collider. We will - look for the expected maximal parity violation in W and Z boson production, - search for parity violation in other processes, - test parton models with spin. This lecture is organized around a few of the key ideas: Siberian Snakes--What are they? High energy proton-proton collisions are scatters of quarks and leptons, at high x, a polarized proton beam is a beam of polarized u quarks, quark and gluon collisions are very sensitive to spin. We will discuss two reactions: how direct photon production measures gluon polarization, and how W{sup +} boson production measures u and d quark polarization.

  7. Spin resonance strength calculations

    SciTech Connect

    Courant,E.D.

    2008-10-06

    In calculating the strengths of depolarizing resonances it may be convenient to reformulate the equations of spin motion in a coordinate system based on the actual trajectory of the particle, as introduced by Kondratenko, rather than the conventional one based on a reference orbit. It is shown that resonance strengths calculated by the conventional and the revised formalisms are identical. Resonances induced by radiofrequency dipoles or solenoids are also treated; with rf dipoles it is essential to consider not only the direct effect of the dipole but also the contribution from oscillations induced by it.

  8. Spin waves in the (

    SciTech Connect

    Lipscombe, O. J.; Chen, G. F.; Fang, Chen; Perring, T. G.; Abernathy, Douglas L; Christianson, Andrew D; Egami, Takeshi; Wang, Nanlin; Hu, Jiangping; Dai, Pengcheng

    2011-01-01

    We use neutron scattering to show that spin waves in the iron chalcogenide Fe{sub 1.05}Te display novel dispersion clearly different from both the first principles density functional calculations and recent observations in the related iron pnictide CaFe{sub 2}As{sub 2}. By fitting to a Heisenberg Hamiltonian, we find that although the nearest-neighbor exchange couplings in the two systems are quite different, their next-nearest-neighbor (NNN) couplings are similar. This suggests that superconductivity in the pnictides and chalcogenides share a common magnetic origin that is intimately associated with the NNN magnetic coupling between the irons.

  9. Photonic spin-controlled multifunctional shared-aperture antenna array

    NASA Astrophysics Data System (ADS)

    Maguid, Elhanan; Yulevich, Igor; Veksler, Dekel; Kleiner, Vladimir; Brongersma, Mark L.; Hasman, Erez

    2016-06-01

    The shared-aperture phased antenna array developed in the field of radar applications is a promising approach for increased functionality in photonics. The alliance between the shared-aperture concepts and the geometric phase phenomenon arising from spin-orbit interaction provides a route to implement photonic spin-control multifunctional metasurfaces. We adopted a thinning technique within the shared-aperture synthesis and investigated interleaved sparse nanoantenna matrices and the spin-enabled asymmetric harmonic response to achieve helicity-controlled multiple structured wavefronts such as vortex beams carrying orbital angular momentum. We used multiplexed geometric phase profiles to simultaneously measure spectrum characteristics and the polarization state of light, enabling integrated on-chip spectropolarimetric analysis. The shared-aperture metasurface platform opens a pathway to novel types of nanophotonic functionality.

  10. Photonic spin-controlled multifunctional shared-aperture antenna array.

    PubMed

    Maguid, Elhanan; Yulevich, Igor; Veksler, Dekel; Kleiner, Vladimir; Brongersma, Mark L; Hasman, Erez

    2016-06-01

    The shared-aperture phased antenna array developed in the field of radar applications is a promising approach for increased functionality in photonics. The alliance between the shared-aperture concepts and the geometric phase phenomenon arising from spin-orbit interaction provides a route to implement photonic spin-control multifunctional metasurfaces. We adopted a thinning technique within the shared-aperture synthesis and investigated interleaved sparse nanoantenna matrices and the spin-enabled asymmetric harmonic response to achieve helicity-controlled multiple structured wavefronts such as vortex beams carrying orbital angular momentum. We used multiplexed geometric phase profiles to simultaneously measure spectrum characteristics and the polarization state of light, enabling integrated on-chip spectropolarimetric analysis. The shared-aperture metasurface platform opens a pathway to novel types of nanophotonic functionality. PMID:27103668

  11. Ultra-High Spin Spectroscopy In Er Nuclei

    SciTech Connect

    Simpson, J.

    2008-11-11

    The discoveries observed in the ongoing conflict between collective and single-particle nuclear behaviour with increasing angular momentum have driven the field of nuclear spectroscopy for many decades and have given rise to new nuclear phenomena. Recently a new frontier of {gamma} spectroscopy at ultra-high spin has been opened in the rare-earth region with rotational bands that bypass the classic band-terminating states that appear at spin 45({Dirac_h}/2{pi}) in the N 90 Er nuclei. These weakly populated rotational structures have characteristics of triaxial strongly-deformed bands. Such structures have been observed in {sup 157,158,160}Er, following a series of experiments using the Gammasphere spectrometer. These observations herald a return to collective excitations at spins of about 50 to 65({Dirac_h}/2{pi}). This talk reviews the status of the spectroscopy and understanding of the observed structures in these Er and neighbouring nuclei.

  12. Manipulating topological states by imprinting non-collinear spin textures

    DOE PAGESBeta

    Streubel, Robert; Han, Luyang; Im, Mi -Young; Kronast, Florian; Rößler, Ulrich K.; Radu, Florin; Abrudan, Radu; Lin, Gungun; Schmidt, Oliver G.; Fischer, Peter; et al

    2015-03-05

    Topological magnetic states, such as chiral skyrmions, are of great scientific interest and show huge potential for novel spintronics applications, provided their topological charges can be fully controlled. So far skyrmionic textures have been observed in noncentrosymmetric crystalline materials with low symmetry and at low temperatures. We propose theoretically and demonstrate experimentally the design of spin textures with topological charge densities that can be tailored at ambient temperatures. Tuning the interlayer coupling in vertically stacked nanopatterned magnetic heterostructures, such as a model system of a Co/Pd multilayer coupled to Permalloy, the in-plane non-collinear spin texture of one layer can bemore » imprinted into the out-of-plane magnetised material. We observe distinct spin textures, e.g. vortices, magnetic swirls with tunable opening angle, donut states and skyrmion core configurations. We show that applying a small magnetic field, a reliable switching between topologically distinct textures can be achieved at remanence« less

  13. Manipulating topological states by imprinting non-collinear spin textures

    SciTech Connect

    Streubel, Robert; Han, Luyang; Im, Mi -Young; Kronast, Florian; Rößler, Ulrich K.; Radu, Florin; Abrudan, Radu; Schmidt, Oliver G.; Fischer, Peter; Makarov, Denys

    2015-03-05

    Topological magnetic states, such as chiral skyrmions, are of great scientific interest and show huge potential for novel spintronics applications, provided their topological charges can be fully controlled. So far skyrmionic textures have been observed in noncentrosymmetric crystalline materials with low symmetry and at low temperatures. We propose theoretically and demonstrate experimentally the design of spin textures with topological charge densities that can be tailored at ambient temperatures. Tuning the interlayer coupling in vertically stacked nanopatterned magnetic heterostructures, such as a model system of a Co/Pd multilayer coupled to Permalloy, the in-plane non-collinear spin texture of one layer can be imprinted into the out-of-plane magnetised material. We observe distinct spin textures, e.g. vortices, magnetic swirls with tunable opening angle, donut states and skyrmion core configurations. We show that applying a small magnetic field, a reliable switching between topologically distinct textures can be achieved at remanence

  14. Aging, memory, and nonhierarchical energy landscape of spin jam

    PubMed Central

    Samarakoon, Anjana; Sato, Taku J.; Chen, Tianran; Chern, Gai-Wei; Yang, Junjie; Klich, Israel; Sinclair, Ryan; Zhou, Haidong; Lee, Seung-Hun

    2016-01-01

    The notion of complex energy landscape underpins the intriguing dynamical behaviors in many complex systems ranging from polymers, to brain activity, to social networks and glass transitions. The spin glass state found in dilute magnetic alloys has been an exceptionally convenient laboratory frame for studying complex dynamics resulting from a hierarchical energy landscape with rugged funnels. Here, we show, by a bulk susceptibility and Monte Carlo simulation study, that densely populated frustrated magnets in a spin jam state exhibit much weaker memory effects than spin glasses, and the characteristic properties can be reproduced by a nonhierarchical landscape with a wide and nearly flat but rough bottom. Our results illustrate that the memory effects can be used to probe different slow dynamics of glassy materials, hence opening a window to explore their distinct energy landscapes. PMID:27698141

  15. Manipulating Topological States by Imprinting Non-Collinear Spin Textures

    PubMed Central

    Streubel, Robert; Han, Luyang; Im, Mi-Young; Kronast, Florian; Rößler, Ulrich K.; Radu, Florin; Abrudan, Radu; Lin, Gungun; Schmidt, Oliver G.; Fischer, Peter; Makarov, Denys

    2015-01-01

    Topological magnetic states, such as chiral skyrmions, are of great scientific interest and show huge potential for novel spintronics applications, provided their topological charges can be fully controlled. So far skyrmionic textures have been observed in noncentrosymmetric crystalline materials with low symmetry and at low temperatures. We propose theoretically and demonstrate experimentally the design of spin textures with topological charge densities that can be tailored at ambient temperatures. Tuning the interlayer coupling in vertically stacked nanopatterned magnetic heterostructures, such as a model system of a Co/Pd multilayer coupled to Permalloy, the in-plane non-collinear spin texture of one layer can be imprinted into the out-of-plane magnetised material. We observe distinct spin textures, e.g. vortices, magnetic swirls with tunable opening angle, donut states and skyrmion core configurations. We show that applying a small magnetic field, a reliable switching between topologically distinct textures can be achieved at remanence. PMID:25739643

  16. Spin-SILC: CMB polarisation component separation with spin wavelets

    NASA Astrophysics Data System (ADS)

    Rogers, Keir K.; Peiris, Hiranya V.; Leistedt, Boris; McEwen, Jason D.; Pontzen, Andrew

    2016-08-01

    We present Spin-SILC, a new foreground component separation method that accurately extracts the cosmic microwave background (CMB) polarisation E and B modes from raw multifrequency Stokes Q and U measurements of the microwave sky. Spin-SILC is an internal linear combination method that uses spin wavelets to analyse the spin-2 polarisation signal P = Q + iU. The wavelets are additionally directional (non-axisymmetric). This allows different morphologies of signals to be separated and therefore the cleaning algorithm is localised using an additional domain of information. The advantage of spin wavelets over standard scalar wavelets is to simultaneously and self-consistently probe scales and directions in the polarisation signal P = Q + iU and in the underlying E and B modes, therefore providing the ability to perform component separation and E-B decomposition concurrently for the first time. We test Spin-SILC on full-mission Planck simulations and data and show the capacity to correctly recover the underlying cosmological E and B modes. We also demonstrate a strong consistency of our CMB maps with those derived from existing component separation methods. Spin-SILC can be combined with the pseudo- and pure E-B spin wavelet estimators presented in a companion paper to reliably extract the cosmological signal in the presence of complicated sky cuts and noise. Therefore, it will provide a computationally-efficient method to accurately extract the CMB E and B modes for future polarisation experiments.

  17. Spin voltage generation across rare earth spin filter barriers

    NASA Astrophysics Data System (ADS)

    Miao, Guoxing; Chang, Joonyeon; Moodera, Jagadeesh

    2011-03-01

    When a metal is in close contact with a rare-earth based magnetic compound, strong exchange interaction exists between the localized 4f electrons and the free moving conduction electrons. One important consequence is that the spin degeneracy among the conduction electrons is lifted, showing up as an effective Zeeman splitting higher than tens of Tesla in low dimensional systems such as graphene and other 2DEG. We perform our work using a vertical transport geometry, which consists of double spin filtering barriers based on a ferromagnetic Eu chalcogenide - EuS. A thin Al metallic layer is sandwiched in the middle and its conduction electrons thus experience the strong spin splitting, which is subsequently detected via the spin filtering effect. A spontaneous spin dependent voltage appears across such a device, and its polarity is directly determined by the EuS/Al interface. The voltage level difference between the spin-parallel and -antiparallel configurations is as large as a few mV. Such spin splitting also induces a clear universal behavior in the observed TMR bias dependence. Such spin voltage effect offers a possibility of directly converting magnetic exchange energy into electrical power. This work is supported by NSF DMR 0504158, ONR N00014-06-1-0235, and KIST-MIT project funds.

  18. Spin pumping and spin-transfer torques in antiferromagnet

    NASA Astrophysics Data System (ADS)

    Niu, Qian

    2015-03-01

    Spin pumping and spin-transfer torques are key elements of coupled dynamics of magnetization and conduction electron spin, which have been widely studied in various ferromagnetic materials. Recent progress in spintronics suggests that a spin current can significantly affects the behavior of an antiferromagnetic material, and the electron motion become adiabatic when the staggered field varies sufficiently slowly. However, pumping from antiferromagnets and its relation to current-induced torques is yet unclear. In a recent study, we have solved this puzzle analytically by calculating how electrons scatter off a normal metal-antiferromagnetic interface. The pumped spin and staggered spin currents are derived in terms of the staggered field, the magnetization, and their rates of change. We find that for both compensated and uncompensated interfaces, spin pumping is of a similar magnitude as in ferromagnets; the direction of spin pumping is controlled by the polarization of the driving microwave. Via the Onsager reciprocity relations, the current-induced torques are also derived, the salient feature of which is illustrated by a terahertz nano-oscillator. In collaboration with Ran Cheng, Jiang Xiao, and A. Brataas.

  19. Unconventional spin texture in a noncentrosymmetric quantum spin Hall insulator

    NASA Astrophysics Data System (ADS)

    Mera Acosta, C.; Babilonia, O.; Abdalla, L.; Fazzio, A.

    2016-07-01

    We propose that the simultaneous presence of both Rashba and band inversion can lead to a Rashba-like spin splitting formed by two bands with the same in-plane helical spin texture. Because of this unconventional spin texture, the backscattering is forbidden in edge and bulk conductivity channels. We propose a noncentrosymmetric honeycomb-lattice quantum spin Hall (QSH) insulator family formed by the IV, V, and VII elements with this property. The system formed by Bi, Pb, and I atoms is mechanically stable and has both a large Rashba spin splitting of 60 meV and a large nontrivial band gap of 0.14 eV. Since the edge and the bulk states are protected by the time-reversal (TR) symmetry, contrary to what happens in most doped QSH insulators, the bulk states do not contribute to the backscattering in the electronic transport, allowing the construction of a spintronic device with less energy loss.

  20. Spin slush in an extended spin ice model

    PubMed Central

    Rau, Jeffrey G.; Gingras, Michel J. P.

    2016-01-01

    We present a new classical spin liquid on the pyrochlore lattice by extending spin ice with further neighbour interactions. We find that this disorder-free spin model exhibits a form of dynamical heterogeneity with extremely slow relaxation for some spins, while others fluctuate quickly down to zero temperature. We thus call this state spin slush, in analogy to the heterogeneous mixture of solid and liquid water. This behaviour is driven by the structure of the ground-state manifold which extends the celebrated two-in/two-out ice states to include branching structures built from three-in/one-out, three-out/one-in and all-in/all-out tetrahedra defects. Distinctive liquid-like patterns in the magnetic correlations serve as a signature of this intermediate range order. Possible applications to materials as well the effects of quantum tunnelling are discussed. PMID:27470199