Novel lineages of Prochlorococcus and Synechococcus in the global oceans.

PubMed

Huang, Sijun; Wilhelm, Steven W; Harvey, H Rodger; Taylor, Karen; Jiao, Nianzhi; Chen, Feng

2012-02-01

Picocyanobacteria represented by Prochlorococcus and Synechococcus have an important role in oceanic carbon fixation and nutrient cycling. In this study, we compared the community composition of picocyanobacteria from diverse marine ecosystems ranging from estuary to open oceans, tropical to polar oceans and surface to deep water, based on the sequences of 16S-23S rRNA internal transcribed spacer (ITS). A total of 1339 ITS sequences recovered from 20 samples unveiled diverse and several previously unknown clades of Prochlorococcus and Synechococcus. Six high-light (HL)-adapted Prochlorococcus clades were identified, among which clade HLVI had not been described previously. Prochlorococcus clades HLIII, HLIV and HLV, detected in the Equatorial Pacific samples, could be related to the HNLC clades recently found in the high-nutrient, low-chlorophyll (HNLC), iron-depleted tropical oceans. At least four novel Synechococcus clades (out of six clades in total) in subcluster 5.3 were found in subtropical open oceans and the South China Sea. A niche partitioning with depth was observed in the Synechococcus subcluster 5.3. Members of Synechococcus subcluster 5.2 were dominant in the high-latitude waters (northern Bering Sea and Chukchi Sea), suggesting a possible cold-adaptation of some marine Synechococcus in this subcluster. A distinct shift of the picocyanobacterial community was observed from the Bering Sea to the Chukchi Sea, which reflected the change of water temperature. Our study demonstrates that oceanic systems contain a large pool of diverse picocyanobacteria, and further suggest that new genotypes or ecotypes of picocyanobacteria will continue to emerge, as microbial consortia are explored with advanced sequencing technology.

Late Eocene to present isotopic (Sr-Nd-Pb) and geochemical evolution of sediments from the Lomonosov Ridge, Arctic Ocean: Implications for continental sources and linkage with the North Atlantic Ocean

NASA Astrophysics Data System (ADS)

Stevenson, Ross; Poirier, André; Véron, Alain; Carignan, Jean; Hillaire-Marcel, Claude

2015-09-01

New geochemical and isotopic (Sr, Nd, Pb) data are presented for a composite sedimentary record encompassing the past 50 Ma of history of sedimentation on the Lomonosov Ridge in the Arctic Ocean. The sampled sediments encompass the transition of the Arctic basin from an enclosed anoxic basin to an open and ventilated oxidized ocean basin. The transition from anoxic basin to open ventilated ocean is accompanied by at least three geochemical and isotopic shifts and an increase in elements (e.g., K/Al) controlled by detrital minerals highlighting significant changes in sediment types and sources. The isotopic compositions of the sediments prior to ventilation are more variable but indicate a predominance of older crustal contributions consistent with sources from the Canadian Shield. Following ventilation, the isotopic compositions are more stable and indicate an increased contribution from younger material consistent with Eurasian and Pan-African crustal sources. The waxing and waning of these sources in conjunction with the passage of water through Fram Strait underlines the importance of the exchange of water mass between the Arctic and North Atlantic Oceans.

Possible association of diazotrophs with marine zooplankton in the Pacific Ocean.

PubMed

Azimuddin, Kazi Md; Hirai, Junya; Suzuki, Shotaro; Haider, Md Nurul; Tachibana, Aiko; Watanabe, Keigo; Kitamura, Minoru; Hashihama, Fuminori; Takahashi, Kazutaka; Hamasaki, Koji

2016-12-01

Dinitrogen fixation, the biological reduction in N 2 gas to ammonia contributes to the supply of new nitrogen in the surface ocean. To understand the diversity and abundance of potentially diazotrophic (N 2 fixing) microorganisms associated with marine zooplankton, especially copepods, the nifH gene was studied using zooplankton samples collected in the Pacific Ocean. In total, 257 nifH sequences were recovered from 23 nifH-positive DNA extracts out of 90 copepod samples. The nifH genes derived from cyanobacteria related to Trichodesmium, α- and γ-subdivisions of proteobacteria, and anaerobic euryarchaeota related to Methanosaeta concilii were detected. Our results indicated that Pleuromamma, Pontella, and Euchaeta were the major copepod genera hosting dinitrogen fixers, though we found no species-specific association between copepods and dinitrogen fixers. Also, the digital PCR provided novel data on the number of copies of the nifH gene in individual copepods, which we report the range from 30 to 1666 copies per copepod. This study is the first systematic study of zooplankton-associated diazotrophs, covering a large area of the open ocean, which provide a clue to further study of a possible new hotspot of N 2 fixation. © 2016 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd.

Microplastic distribution in global marine surface waters: results of an extensive citizen science study

NASA Astrophysics Data System (ADS)

Barrows, A.; Petersen, C.

2017-12-01

Plastic is a major pollutant throughout the world. The majority of the 322 million tons produced annually is used for single-use packaging. What makes plastic an attractive packaging material: cheap, light-weight and durable are also the features that help make it a common and persistent pollutant. There is a growing body of research on microplastic, particles less than 5 mm in size. Microfibers are the most common microplastic in the marine environment. Global estimates of marine microplastic surface concentrations are based on relatively small sample sizes when compared to the vast geographic scale of the ocean. Microplastic residence time and movement along the coast and sea surface outside of the gyres is still not well researched. This five-year project utilized global citizen scientists to collect 1,628 1-liter surface grab samples in every major ocean. The Artic and Southern oceans contained highest average of particles per liter of surface water. Open ocean samples (further than 12 nm from land, n = 686) contained a higher particle average (17 pieces L-1) than coastal samples (n = 723) 6 pieces L-1. Particles were predominantly 100 µm- 1.5 mm in length (77%), smaller than what has been captured in the majority of surface studies. Utilization of citizen scientists to collect data both in fairly accessible regions of the world as well as from areas hard to reach and therefore under sampled, provides us with a wider perspective of global microplastics occurrence. Our findings confirm global microplastic accumulation zone model predictions. The open ocean and poles have sequestered and trapped plastic for over half a century, and show that not only plastics, but anthropogenic fibers are polluting the environment. Continuing to fill knowledge gaps on microplastic shape, size and color in remote ocean areas will drive more accurate oceanographic models of plastic accumulation zones. Incorporation of smaller-sized particles in these models, which has previously been lacking, will help to better understand potential fate and transformation microplastic and anthropogenic particles in the marine environment.

Metals and metalloids in precipitation collected during CHINARE campaign from Shanghai, China, to Zhongshan Station, Antarctica: Spatial variability and source identification

NASA Astrophysics Data System (ADS)

Shi, G.; Teng, J.; Ma, H.; Li, Y.; Sun, B.

2015-06-01

Metals and metalloids in continental precipitation have been widely observed, but the data over open oceans are still very limited. Investigation of metals and metalloids in marine precipitation is of great significance to understand global transport of these elements in the atmosphere and their input fluxes to the oceans. So shipboard sampling of precipitation was conducted during a Chinese National Antarctic Research Expedition campaign from Shanghai, China, to Zhongshan Station, East Antarctica, and 22 samples (including 17 rainfall and 5 snowfall events) were collected and analyzed for concentrations of Pb, Ni, Cr, Cu, Co, Hg, As, Cd, Sb, Se, Zn, Mn, and Ti. Results show that concentrations of both metals and metalloids vary considerably along the cruise, with higher concentrations at coastal sites and lower values on the south Indian Ocean. Although only soluble fractions were determined for elements, concentrations in this study are generally comparable to the reported values of marine rain. Enrichment factor analysis shows that most of metals and metalloids are enriched versus crustal sources, even in the samples collected from remote south Indian Ocean. In addition, metals and metalloids in precipitation are also very enriched above sea-salt abundance, indicating that impacts of sea-salt aerosols on their concentrations are negligible. Main sources of metals and metalloids were explored with the aid of multivariate statistical analyses. The results show that human emissions have far-reaching distribution, which may exert an important influence on the solubility of elements in precipitation. This investigation provides valuable information on spatial variation and possible sources of trace elements in precipitation over the open oceans corresponding to understudied region.

On the role of mesoscale eddies for the biological productivity and biogeochemistry in the eastern tropical Pacific Ocean off Peru

NASA Astrophysics Data System (ADS)

Stramma, L.; Bange, H. W.; Czeschel, R.; Lorenzo, A.; Frank, M.

2013-06-01

Mesoscale eddies seem to play an important role for both the hydrography and biogeochemistry of the eastern tropical Pacific Ocean (ETSP) off Peru. However, detailed surveys of these eddies are not available, which has so far hampered an in depth understanding of their implications for nutrient distribution and biological productivity. In this study three eddies along a section at 16°45' S have been surveyed intensively during R/V Meteor cruise M90 in November 2012. A coastal mode water eddy, an open ocean mode water eddy and an open ocean cyclonic eddy have been identified and sampled in order to determine both their hydrographic properties and their influence on the biogeochemical setting of the ETSP. In the thermocline the temperature of the coastal anticyclonic eddy was up to 2 °C warmer, 0.2 more saline and the swirl velocity was up to 35 cm s-1. The observed temperature and salinity anomalies, as well as swirl velocities of both types of eddies were about twice as large as had been described for the mean eddies in the ETSP and the observed heat and salt anomalies (AHA, ASA) show a much larger variability than the mean AHA and ASA. We found that the eddies contributed significantly to productivity by maintaining pronounced subsurface maxima of chlorophyll. Based on a comparison of the coastal (young) mode water eddy and the open ocean (old) mode water eddy we conclude that the aging of eddies when they detach from the coast and move westward to the open ocean considerably influences the eddies' properties: chlorophyll maxima are weaker and nutrients are subducted. The coastal mode water eddy was found to be a hotspot of nitrogen loss in the OMZ, whereas, the open ocean cyclonic eddy was of negligible importance for nitrogen loss. Our results show that the important role the eddies play in the ETSP can only be fully deciphered and understood through dedicated high spatial and temporal resolution oceanographic/biogeochemical surveys.

Opening of the South China Sea and Upwelling of the Hainan Plume

NASA Astrophysics Data System (ADS)

Yu, Mengming; Yan, Yi; Huang, Chi-Yue; Zhang, Xinchang; Tian, Zhixian; Chen, Wen-Huang; Santosh, M.

2018-03-01

Opening of the South China Sea and upwelling of the Hainan Plume are among the most challenging issues related to the tectonic evolution of East Asia. However, when and how the Hainan Plume affected the opening of the South China Sea remains unclear. Here we investigate the geochemical and isotopic features of the 25 Ma mid-ocean ridge basalt (MORB) in the Kenting Mélange, southern Taiwan, 16 Ma MORB drilled by the IODP Expedition 349, and 9 Ma ocean island basalt-type dredged seamount basalt. The 25 Ma MORBs reveal a less metasomatic depleted MORB mantle-like source. In contrast, the Miocene samples record progressive mantle enrichment and possibly signal the contribution of the Hainan Plume. We speculate that MORBs of the South China Sea which could have recorded plume-ridge source mixing perhaps appear since 23.8 Ma. On the contrary, the Paleocene-Eocene ocean island basalt-type intraplate volcanism of the South China continental margin is correlated to decompression melting of a passively upwelling fertile asthenosphere due to continental rifting.

Open-Ocean and Coastal Properties of Recent Major Tsunamis

NASA Astrophysics Data System (ADS)

Rabinovich, A.; Thomson, R.; Zaytsev, O.

2017-12-01

The properties of six major tsunamis during the period 2009-2015 (2009 Samoa; 2010 Chile; 2011 Tohoku; 2012 Haida Gwaii; 2014 and 2015 Chile) were thoroughly examined using coastal data from British Columbia, the U.S. West Coast and Mexico, and offshore open-ocean DART and NEPTUNE stations. Based on joint spectral analyses of the tsunamis and background noise, we have developed a method to suppress the influence of local topography and to use coastal observations to determine the underlying spectra of tsunami waves in the deep ocean. The "reconstructed" open-ocean tsunami spectra were found to be in close agreement with the actual tsunami spectra evaluated from the analysis of directly measured open-ocean tsunami records. We have further used the spectral estimates to parameterize tsunamis based on their integral open-ocean spectral characteristics. Three key parameters are introduced to describe individual tsunami events: (1) Integral open-ocean energy; (2) Amplification factor (increase of the mean coastal tsunami variance relative to the open-ocean variance); and (3) Tsunami colour, the frequency composition of the open-ocean tsunami waves. In particular, we found that the strongest tsunamis, associated with large source areas (the 2010 Chile and 2011 Tohoku) are "reddish" (indicating the dominance of low-frequency motions), while small-source events (the 2009 Samoa and 2012 Haida Gwaii) are "bluish" (indicating strong prevalence of high-frequency motions).

50 CFR 648.15 - Facilitation of enforcement.

Code of Federal Regulations, 2011 CFR

2011-10-01

... surfclam and ocean quahog vessel owners and operators. (1) Surfclam and ocean quahog open access permitted vessels. Vessel owners or operators issued an open access surfclam or ocean quahog open access permit for.../or an Open Access Herring Permit that fished with midwater trawl gear pursuant to § 648.80(d). Such...

IODP Expedition 335: Deep Sampling in ODP Hole 1256D

NASA Astrophysics Data System (ADS)

Teagle, D. A. H.; Ildefonse, B.; Blum, P.; IODP Expedition 335 Scientists, the

2012-04-01

Observations of the gabbroic layers of untectonized ocean crust are essential to test theoretical models of the accretion of new crust at mid-ocean ridges. Integrated Ocean Drilling Program (IODP) Expedition 335 ("Superfast Spreading Rate Crust 4") returned to Ocean Drilling Program (ODP) Hole 1256D with the intention of deepening this reference penetration of intact ocean crust a significant distance (~350 m) into cumulate gabbros. Three earlier cruises to Hole 1256D (ODP 206, IODP 309/312) have drilled through the sediments, lavas, and dikes and 100 m into a complex dike-gabbro transition zone. Operations on IODP Expedition 335 proved challenging throughout, with almost three weeks spent re-opening and securing unstable sections of the hole. When coring commenced, the comprehensive destruction of the coring bit required further remedial operations to remove junk and huge volumes of accumulated drill cuttings. Hole-cleaning operations using junk baskets were successful, and they recovered large irregular samples that document a hitherto unseen sequence of evolving geological conditions and the intimate coupling between temporally and spatially intercalated intrusive, hydrothermal, contact-metamorphic, partial melting, and retrogressive processes. Hole 1256D is now clean of junk, and it has been thoroughly cleared of the drill cuttings that hampered operations during this and previous expeditions. At the end of Expedition 335, we briefly resumed coring before undertaking cementing operations to secure problematic intervals. To ensure the greatest scientific return from the huge efforts to stabilize this primary ocean lithosphere reference site, it would be prudent to resume the deepening of Hole 1256D in the nearest possible future while it is open to full depth. doi:10.2204/iodp.sd.13.04.2011

Semantic Approaches Applied to Scientific Ocean Drilling Data

NASA Astrophysics Data System (ADS)

Fils, D.; Jenkins, C. J.; Arko, R. A.

2012-12-01

The application of Linked Open Data methods to 40 years of data from scientific ocean drilling is providing users with several new methods for rich-content data search and discovery. Data from the Deep Sea Drilling Project (DSDP), Ocean Drilling Program (ODP) and Integrated Ocean Drilling Program (IODP) have been translated and placed in RDF triple stores to provide access via SPARQL, linked open data patterns, and by embedded structured data through schema.org / RDFa. Existing search services have been re-encoded in this environment which allows the new and established architectures to be contrasted. Vocabularies including computed semantic relations between concepts, allow separate but related data sets to be connected on their concepts and resources even when they are expressed somewhat differently. Scientific ocean drilling produces a wide range of data types and data sets: borehole logging file-based data, images, measurements, visual observations and the physical sample data. The steps involved in connecting these data to concepts using vocabularies will be presented, including the connection of data sets through Vocabulary of Interlinked Datasets (VoID) and open entity collections such as Freebase and dbPedia. Demonstrated examples will include: (i) using RDF Schema for inferencing and in federated searches across NGDC and IODP data, (ii) using structured data in the data.oceandrilling.org web site, (iii) association through semantic methods of age models and depth recorded data to facilitate age based searches for data recorded by depth only.

Millennial-scale variability in the local radiocarbon reservoir age of south Florida during the Holocene

USGS Publications Warehouse

Toth, Lauren T.; Cheng, Hai; Edwards, R. Lawrence; Ashe, Erica; Richey, Julie N.

2017-01-01

A growing body of research suggests that the marine environments of south Florida provide a critical link between the tropical and high-latitude Atlantic. Changes in the characteristics of water masses off south Florida may therefore have important implications for our understanding of climatic and oceanographic variability over a broad spatial scale; however, the sources of variability within this oceanic corridor remain poorly understood. Measurements of ΔR, the local offset of the radiocarbon reservoir age, from shallow-water marine environments can serve as a powerful tracer of water-mass sources that can be used to reconstruct variability in local-to regional-scale oceanography and hydrology. We combined radiocarbon and U-series measurements of Holocene-aged corals from the shallow-water environments of the Florida Keys reef tract (FKRT) with robust statistical modeling to quantify the millennial-scale variability in ΔR at locations with (“nearshore”) and without (“open ocean”) substantial terrestrial influence. Our reconstructions demonstrate that there was significant spatial and temporal variability in ΔR on the FKRT during the Holocene. Whereas ΔR was similar throughout the region after ∼4000 years ago, nearshore ΔR was significantly higher than in the open ocean during the middle Holocene. We suggest that the elevated nearshore ΔR from ∼8000 to 5000 years ago was most likely the result of greater groundwater influence associated with lower sea level at this time. In the open ocean, which would have been isolated from the influence of groundwater, ΔR was lowest ∼7000 years ago, and was highest ∼3000 years ago. We evaluated our open-ocean model of ΔR variability against records of local-to regional-scale oceanography and conclude that local upwelling was not a significant driver of open-ocean radiocarbon variability in this region. Instead, the millennial-scale trends in open-ocean ΔR were more likely a result of broader-scale changes in western Atlantic circulation associated with an increase in the supply of equatorial South Atlantic water to the Caribbean and shifts in the character of South Atlantic waters resulting from variation in the intensity of upwelling off the southwest coast of Africa. Because accurate estimates of ΔR are critical to precise calibrations of radiocarbon dates from marine samples, we also developed models of nearshore and open-ocean ΔR versus conventional 14C ages that can be used for regional radiocarbon calibrations for the Holocene. Our study provides new insights into the patterns and drivers of oceanographic and hydrologic variability in the Straits of Florida and highlights the value of the paleoceanographic records from south Florida to our understanding of Holocene changes in climate and ocean circulation throughout the Atlantic.

Ocean Instruments Web Site for Undergraduate, Secondary and Informal Education

NASA Astrophysics Data System (ADS)

Farrington, J. W.; Nevala, A.; Dolby, L. A.

2004-12-01

An Ocean Instruments web site has been developed that makes available information about ocean sampling and measurement instruments and platforms. The site features text, pictures, diagrams and background information written or edited by experts in ocean science and engineering and contains links to glossaries and multimedia technologies including video streaming, audio packages, and searchable databases. The site was developed after advisory meetings with selected professors teaching undergraduate classes who responded to the question, what could Woods Hole Oceanographic Institution supply to enhance undergraduate education in ocean sciences, life sciences, and geosciences? Prototypes were developed and tested with students, potential users, and potential contributors. The site is hosted by WHOI. The initial five instruments featured were provided by four WHOI scientists and engineers and by one Sea Education Association faculty member. The site is now open to contributions from scientists and engineers worldwide. The site will not advertise or promote the use of individual ocean instruments.

Evidence for major input of riverine organic matter into the ocean

USGS Publications Warehouse

Cao, Xiaoyan; Aiken, George R.; Butler, Kenna D.; Huntington, Thomas G.; Balch, William M.; Mao, Jingdong; Schmidt-Rohr, Klaus

2018-01-01

The changes in the structure of XAD-8 isolated dissolved organic matter (DOM) samples along a river (Penobscot River) to estuary (Penobscot Bay) to ocean (across the Gulf of Maine) transect and from the Pacific Ocean were investigated using selective and two dimensional (2D) nuclear magnetic resonance (NMR) spectroscopy coupled with elemental and carbon isotope analysis. The results provide important insights into the nature of relatively stable structures in the river-to-ocean continuum and the enigma of the fate of terrestrial DOM in the marine system. First, lignin and carboxyl-rich alicyclic molecules (CRAMs), which are indistinguishable from mass spectrometry, were clearly differentiated with NMR spectroscopy. NMR unambiguously showed that CRAMs persisted along the river-to-ocean transect and in the Pacific Ocean, while lignin residues dramatically decreased in abundance from the river to the coastal ocean and the Pacific Ocean. The results challenge a previous conclusion that lignin-derived compounds are refractory and can accumulate in the coastal ocean. The loss of terrestrial plant-derived aromatic compounds such as lignin and tannin residues throughout the sequence of riverine, coastal, and open ocean DOM extracts could also partially explain the decreasing organic carbon recovery by XAD-8 isolation and the change in carbon stable isotope composition from riverine DOM (δ13C −27.6‰) to ocean DOM (δ13C −23.0‰) extracts. The observation, from advanced NMR, of similar CRAM molecules in XAD-8 isolated DOM samples from the Penobscot River to the Penobscot Bay and from the ocean refutes a previous conclusion that XAD-isolated DOM samples from seawater and river are distinctly different. The alicyclic structural features of CRAMs and their presence as the major structural units in DOM extracts from the Penobscot River to Gulf of Maine transect, together with the deduced old 14C age of CRAMs in the ocean, imply that terrestrial CRAMs may persist on timescales long enough to be transported into the ocean.

Long-term seafloor monitoring at an open ocean aquaculture site in the western Gulf of Maine, USA: development of an adaptive protocol.

PubMed

Grizzle, R E; Ward, L G; Fredriksson, D W; Irish, J D; Langan, R; Heinig, C S; Greene, J K; Abeels, H A; Peter, C R; Eberhardt, A L

2014-11-15

The seafloor at an open ocean finfish aquaculture facility in the western Gulf of Maine, USA was monitored from 1999 to 2008 by sampling sites inside a predicted impact area modeled by oceanographic conditions and fecal and food settling characteristics, and nearby reference sites. Univariate and multivariate analyses of benthic community measures from box core samples indicated minimal or no significant differences between impact and reference areas. These findings resulted in development of an adaptive monitoring protocol involving initial low-cost methods that required more intensive and costly efforts only when negative impacts were initially indicated. The continued growth of marine aquaculture is dependent on further development of farming methods that minimize negative environmental impacts, as well as effective monitoring protocols. Adaptive monitoring protocols, such as the one described herein, coupled with mathematical modeling approaches, have the potential to provide effective protection of the environment while minimize monitoring effort and costs. Copyright © 2014 Elsevier Ltd. All rights reserved.

Molecular distributions and isotopic compositions of marine aerosols over the western North Atlantic: Dicarboxylic acids, ketoacids, α-dicarbonyls (glyoxal and methylglyoxal), fatty acids, sugars, and SOA tracers

NASA Astrophysics Data System (ADS)

Kawamura, K.; Ono, K.; Tachibana, E.; Quinn, P.; Bates, T. S.

2013-12-01

Marine aerosols were collected over the western North Atlantic from off the coast of Boston to Bermuda during the WACS (Western Atlantic Climate Study) cruise of R/V Ronald H. Brown in August 2012 using a high volume air sampler and pre-combusted quartz fiber filters. Aerosol filter samples (n=5) were analyzed for OC/EC, major inorganic ions, low molecular weight dicarboxylic acids and various secondary organic aerosol (SOA) tracers using carbon analyzer, ion chromatograph, GC/FID and GC/MS, respectively. Homologous series (C2-C12) of dicarboxylic acids (31-335 ng m-3) were detected with a predominance of oxalic acid. Total carbon and nitrogen and their stable isotope ratios were determined as well as stable carbon isotopic compositions of individual diacids using IRMS. Diacids were found to be the most abundant compound class followed by monoterpene-SOA tracers > isoprene-SOA tracers > sugar compounds > ketoacids > fatty alcohols > fatty acids > α-dicarbonyls > aromatic acids > n-alkanes. The concentrations of these compounds were higher in the coastal site and decreased in the open ocean. However, diacids stayed relatively high even in the remote ocean. Interestingly, contributions of oxalic acid to total aerosol carbon increased from the coast (2.3%) to the remote ocean (5.6%) during long-range atmospheric transport. Stable carbon isotopic composition of oxalic acid increased from the coast (-17.5‰) to open ocean (-12.4‰), suggesting that photochemical aging of organic aerosols occurred during the atmospheric transport over the ocean. Stable carbon isotope ratios of bulk aerosol carbon also increased from the coast near Boston to the open ocean near Bermuda.

Multi-pumping flow system for the determination of boron in eye drops, drinking water and ocean water.

PubMed

González, Pablo; Sixto, Alexandra; Knochen, Moisés

2017-05-01

A novel automated method for the determination of boron based on the use of pulsed flows was developed and applied to the determination of this element in samples of tap water, ocean water and eye drops. The method was implemented by means of a multi-pumping system consisting of three solenoid micropumps and a photometric detector and exploits the reaction of azomethine-H in the presence of boron. The system runs under control of an open-source microcontroller. The main operational parameters were optimized. Given the particular kinetics of the reaction, a stopped-flow period (1 or 5min) was included to allow for color development. The method presents linearity in the range 0.35-3.0mgL -1 , good precision (s r <3%), and detection and quantification limits of 0.10 and 0.35mgL -1 respectively. Samples of tap water or eye drops could be successfully analyzed employing a 1-minute stop time, providing a maximum sampling frequency of 32 samples h -1 . In order to overcome matrix effect caused by the high saline concentration, ocean water samples required stop times of 5min, providing a sampling frequency of 10 samples h -1 . Recoveries of 102% (eye drops), 94% (drinking water) and 93% (ocean water) were obtained. The method was considered accurate and fit for the purpose. Copyright © 2015 Elsevier B.V. All rights reserved.

Constraints on the sources of branched GDGTs in open ocean sediments: dust transport or in situ production?

NASA Astrophysics Data System (ADS)

Weijers, J.; Schefuss, E.; Kim, J.; Sinninghe Damsté, J. S.; Schouten, S.

2012-12-01

Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are membrane lipids synthesized by soil bacteria that, upon soil erosion, are transported by rivers to the ocean where they accumulate in the near shore sedimentary archive. The degrees of cyclisation (CBT) and methylation (MBT) of these compounds have been shown to relate to soil pH and annual mean air temperature [1]. Therefore, brGDGTs in near shore sedimentary archives can be used to estimate past continental air temperatures and enable a direct comparison of these to marine sea surface temperature estimates obtained from the same samples. In addition, brGDGT abundance relative to crenarchaeol, an isoprenoid GDGT synthesized by marine pelagic Thaumarchaeota, quantified in the branched vs. isoprenoid tetraether (BIT) index, is an indicator of the relative input of soil organic matter in near shore sediments [2]. High BIT values near river outflows testify of relative strong soil organic matter input and generally the BIT index will decrease off shore to values near 0, the marine end-member value. Even in remote open ocean sediments, however, the BIT index will rarely reach 0 as small amounts of brGDGTs are often present. The occurrence of these brGDGTs in open marine settings might be a result of i) dust input, ii) sediment dispersion from near coastal areas, or iii) in situ production in marine sediments. In order to constrain the origin of branched GDGTs in open marine sediments we analyzed i) atmospheric dust samples taken along an equatorial African coastal transect, ii) marine surface waters near and away of the Congo river outflow, iii) a series of surface sediments at and around the Congo deep sea fan, and iv) a series of open marine surface sediments from different oceans with BIT values < 0.08. Our results show that brGDGTs are present, though in relative low amounts, in dust. Their distribution resembles that of soil input as also found in the Congo deep sea fan, with MBT and CBT values that could be representative of tropical African soils. Strikingly, BIT indices are much lower than expected for soils (0.15-0.42), likely as a result of sea spray on the dust filters. Open ocean sediments, on the contrary, are typically characterized by relative high amounts of cyclopentane containing brGDGTs resulting in low CBT values ranging from -0.4 - 0.8. These values are similarly low as reported earlier in marine sediments near Svalbard [3] and in the East China Sea [4], for which in situ production was invoked. Thus, brGDGT transport by dust does seem possible, though quantities are low. Since open ocean brGDGT distributions are markedly different from those in soils and dust, the latter is most likely not a significant source. Our results indicate that production of brGDGTs in ocean sediments, though in relative low amounts, is much more widespread than previously thought. This emphasizes that the MBT-CBT proxy for continental air temperature should only be used at locations where soil organic matter input is significant as evidenced by high BIT indices. References: [1] Weijers J.W.H. et al. (2007) Geochmim. Cosmochim. Acta 71, 703-713. [2] Hopmans E.C. et al. (2004) Earth Planet. Sci. Lett. 224, 107-116. [3] Peterse F. et al. (2009) Org. Geochem. 40, 692-699. [4] Zhu C. Et al. (2011) Org. Geochem. 42, 376-386.

Analysis of dust samples collected from spent nuclear fuel interim storage containers at Hope Creek, Delaware, and Diablo Canyon, California

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bryan, Charles R.; Enos, David George

2014-07-01

Potentially corrosive environments may form on the surface of spent nuclear fuel dry storage canisters by deliquescence of deposited dusts. To assess this, samples of dust were collected from in-service dry storage canisters at two near-marine sites, the Hope Creek and Diablo Canyon storage installations, and have been characterized with respect to mineralogy, chemistry, and texture. At both sites, terrestrially-derived silicate minerals, including quartz, feldspars, micas, and clays, comprise the largest fraction of the dust. Also significant at both sites were particles of iron and iron-chromium metal and oxides generated by the manufacturing process. Soluble salt phases were minor componentmore » of the Hope Creek dusts, and were compositionally similar to inland salt aerosols, rich in calcium, sulfate, and nitrate. At Diablo Canyon, however, sea-salt aerosols, occurring as aggregates of NaCl and Mg-sulfate, were a major component of the dust samples. The seasalt aerosols commonly occurred as hollow spheres, which may have formed by evaporation of suspended aerosol seawater droplets, possibly while rising through the heated annulus between the canister and the overpack. The differences in salt composition and abundance for the two sites are attributed to differences in proximity to the open ocean and wave action. The Diablo Canyon facility is on the shores of the Pacific Ocean, while the Hope Creek facility is on the shores of the Delaware River, several miles from the open ocean.« less

The Influences of Riverine Dissolved Organic Matter in the Gulf of Maine

NASA Astrophysics Data System (ADS)

Aiken, G.; Cao, X.; Mao, J.; Spencer, R. G.; Balch, W. M.; Huntington, T. G.

2014-12-01

Dissolved organic matter (DOM) exported from the Gulf of St. Lawrence and by rivers in Maine, Nova Scotia, and New Brunswick is being studied to quantify and characterize optical proxies in the receiving waters of the Gulf of Maine (GoM). Measurements of DOC concentrations, absorption coefficients (254nm, 350 nm and 412 nm), specific ultraviolet absorbance (SUVA254), spectral slope, and fluorescence, and DOC fractionation and isotopic analyses were used to determine the amount and nature of DOM from major inflowing rivers, marine waters, and the GoM. In addition, lignin phenols, 14C-age, 13C-NMR and FTICR-MS analyses were performed on the hydrophobic (HPOA) and transphilic organic acid fractions of the DOM isolated using XAD resins for a smaller subset of samples from the Penobscot River, Penobscot Bay, GoM waters in the Eastern Maine Coastal Current (EMCC), a sample from the eastern portion of the GoM (Scotian Shelf waters), and the Pacific Ocean. These samples provide detailed DOM compositional data in support of the more easily collected concentration and optical data obtained from discrete samples, optical data obtained by in situ glider, and remotely sensed satellite observations. Optical measurements, 13C-NMR, and lignin phenol analyses showed that DOM associated with inflowing rivers to the GoM is rich in aromatic compounds resulting in a large flux of terrestrially derived chromophoric DOM (CDOM). As a result, GoM DOM is more aromatic and younger than open ocean samples collected from the Sargasso Sea and from the Pacific Ocean near Hawaii. This observation is consistent with isotopic data that indicated δ 13C values for the HPOA fractions from the Gulf samples (δ 13C= -27‰ and -25‰) were considerably depleted in comparison to the whole DOM sample (δ 13C = -19‰; which also includes algal-produced DOM) and are more similar to those from the terrestrial sources. Samples from the EMCC were the most heavily influenced by terrestrial sources. While NMR analyses indicated decreases in the aromaticity of the HPOA fractions moving from the rivers to the open ocean, NMR signals associated with carboxyl-rich alicyclic organic matter were observed for all samples. Results from this study are being used to develop relationships for predicting DOC concentration in the GoM from remotely sensed, satellite optical data.

Importance of salt fingering for new nitrogen supply in the oligotrophic ocean.

PubMed

Fernández-Castro, B; Mouriño-Carballido, B; Marañón, E; Chouciño, P; Gago, J; Ramírez, T; Vidal, M; Bode, A; Blasco, D; Royer, S-J; Estrada, M; Simó, R

2015-09-09

The input of new nitrogen into the euphotic zone constrains the export of organic carbon to the deep ocean and thereby the biologically mediated long-term CO2 exchange between the ocean and atmosphere. In low-latitude open-ocean regions, turbulence-driven nitrate diffusion from the ocean's interior and biological fixation of atmospheric N2 are the main sources of new nitrogen for phytoplankton productivity. With measurements across the tropical and subtropical Atlantic, Pacific and Indian oceans, we show that nitrate diffusion (171±190 μmol m(-2) d(-1)) dominates over N2 fixation (9.0±9.4 μmol m(-2) d(-1)) at the time of sampling. Nitrate diffusion mediated by salt fingers is responsible for ca. 20% of the new nitrogen supply in several provinces of the Atlantic and Indian Oceans. Our results indicate that salt finger diffusion should be considered in present and future ocean nitrogen budgets, as it could supply globally 0.23-1.00 Tmol N yr(-1) to the euphotic zone.

Contribution of Phycoerythrin-Containing Phytoplankton to Remotely Sensed Signals in the Ocean

NASA Technical Reports Server (NTRS)

Vernet, Maria; Iturriaga, Rodolfo

1997-01-01

The purpose of this project was to evaluate the importance of phycoerythrin-containing phytoplankton, in particular coccoid cyanobacteria, to remote sensing. We proposed to estimate cyanobacteria abundance and pigmentation and their relationship to water-column optics. We have estimated the contribution of cyanobacteria to scattering and backscattering in both open ocean (Sargasso Sea) and coastal waters (western coast of North Atlantic and the California Current). Sampling and data processing is performed. Relationship between water column optics and phycoerythrin concentration and algorithms development are being carried out.

Global occurrence of tellurium-rich ferromanganese crusts and a model for the enrichment of tellurium

USGS Publications Warehouse

Hein, J.R.; Koschinsky, A.; Halliday, A.N.

2003-01-01

Hydrogenetic ferromanganese oxyhydroxide crusts (Fe-Mn crusts) precipitate out of cold ambient ocean water onto hard-rock surfaces (seamounts, plateaus, ridges) at water depths of about 400 to 4000 m throughout the ocean basins. The slow-growing (mm/Ma) Fe-Mn crusts concentrate most elements above their mean concentration in the Earth's crust. Tellurium is enriched more than any other element (up to about 50,000 times) relative to its Earth's crustal mean of about 1 ppb, compared with 250 times for the next most enriched element. We analyzed the Te contents for a suite of 105 bulk hydrogenetic crusts and 140 individual crust layers from the global ocean. For comparison, we analyzed 10 hydrothermal stratabound Mn-oxide samples collected from a variety of tectonic environments in the Pacific. In the Fe-Mn crust samples, Te varies from 3 to 205 ppm, with mean contents for Pacific and Atlantic samples of about 50 ppm and a mean of 39 ppm for Indian crust samples. Hydrothermal Mn samples have Te contents that range from 0.06 to 1 ppm. Continental margin Fe-Mn crusts have lower Te contents than open-ocean crusts, which is the result of dilution by detrital phases and differences in growth rates of the hydrogenetic phases. Correlation coefficient matrices show that for hydrothermal deposits, Te has positive correlations with elements characteristic of detrital minerals. In contrast, Te in open-ocean Fe-Mn crusts usually correlates with elements characteristic of the MnO2, carbonate fluorapatite, and residual biogenic phases. In continental margin crusts, Te also correlates with FeOOH associated elements. In addition, Te is negatively correlated with water depth of occurrence and positively correlated with crust thickness. Q-mode factor analyses support these relationships. However, sequential leaching results show that most of the Te is associated with FeOOH in Fe-Mn crusts and ???10% is leached with the MnO2. Thermodynamic calculations indicate that Te occurs predominantly as H5TeO6- in ocean water. The speciation of Te in ocean water and charge balance considerations indicate that Te should be scavenged by FeOOH, which is in agreement with our leaching results. The thermodynamically more stable Te(IV) is less abundant by factors of 2 to 3.5 than Te(VI) in ocean water. This can be explained by preferential (not exclusive) scavenging of Te(IV) by FeOOH at the Fe-Mn crust surface and by Fe-Mn colloids in the water column. We propose a model in which the extreme enrichment of Te in Fe-Mn crusts is likely the result of an oxidation reaction on the surface of FeOOH. A similar oxidation process has been confirmed for Co, Ce, and Tl at the surface of MnO2 in crusts, but has not been suggested previously to occur in association with FeOOH in Fe-Mn crusts. Mass-balance considerations indicate that ocean floor Fe-Mn deposits are the major sink for Te in the oceans. The concentration and redox chemistry of Te in the global ocean are likely controlled by scavenging on Fe-Mn colloids in the water column and Fe-Mn deposits on the ocean floor, as is also the case for Ce. ?? 2003 Elsevier Science Ltd.

Genetic Diversity and Population Structure of the Pelagic Thresher Shark (Alopias pelagicus) in the Pacific Ocean: Evidence for Two Evolutionarily Significant Units

PubMed Central

Cardeñosa, Diego; Hyde, John; Caballero, Susana

2014-01-01

There has been an increasing concern about shark overexploitation in the last decade, especially for open ocean shark species, where there is a paucity of data about their life histories and population dynamics. Little is known regarding the population structure of the pelagic thresher shark, Alopias pelagicus. Though an earlier study using mtDNA control region data, showed evidence for differences between eastern and western Pacific populations, the study was hampered by low sample size and sparse geographic coverage, particularly a lack of samples from the central Pacific. Here, we present the population structure of Alopias pelagicus analyzing 351 samples from six different locations across the Pacific Ocean. Using data from mitochondrial DNA COI sequences and seven microsatellite loci we found evidence of strong population differentiation between western and eastern Pacific populations and evidence for reciprocally monophyly for organelle haplotypes and significant divergence of allele frequencies at nuclear loci, suggesting the existence of two Evolutionarily Significant Units (ESU) in the Pacific Ocean. Interestingly, the population in Hawaii appears to be composed of both ESUs in what seems to be clear sympatry with reproductive isolation. These results may indicate the existence of a new cryptic species in the Pacific Ocean. The presence of these distinct ESUs highlights the need for revised management plans for this highly exploited shark throughout its range. PMID:25337814

Genetic diversity and population structure of the pelagic thresher shark (Alopias pelagicus) in the Pacific Ocean: evidence for two evolutionarily significant units.

PubMed

Cardeñosa, Diego; Hyde, John; Caballero, Susana

2014-01-01

There has been an increasing concern about shark overexploitation in the last decade, especially for open ocean shark species, where there is a paucity of data about their life histories and population dynamics. Little is known regarding the population structure of the pelagic thresher shark, Alopias pelagicus. Though an earlier study using mtDNA control region data, showed evidence for differences between eastern and western Pacific populations, the study was hampered by low sample size and sparse geographic coverage, particularly a lack of samples from the central Pacific. Here, we present the population structure of Alopias pelagicus analyzing 351 samples from six different locations across the Pacific Ocean. Using data from mitochondrial DNA COI sequences and seven microsatellite loci we found evidence of strong population differentiation between western and eastern Pacific populations and evidence for reciprocally monophyly for organelle haplotypes and significant divergence of allele frequencies at nuclear loci, suggesting the existence of two Evolutionarily Significant Units (ESU) in the Pacific Ocean. Interestingly, the population in Hawaii appears to be composed of both ESUs in what seems to be clear sympatry with reproductive isolation. These results may indicate the existence of a new cryptic species in the Pacific Ocean. The presence of these distinct ESUs highlights the need for revised management plans for this highly exploited shark throughout its range.

Open-ocean fish reveal an omnidirectional solution to camouflage in polarized environments.

PubMed

Brady, Parrish C; Gilerson, Alexander A; Kattawar, George W; Sullivan, James M; Twardowski, Michael S; Dierssen, Heidi M; Gao, Meng; Travis, Kort; Etheredge, Robert Ian; Tonizzo, Alberto; Ibrahim, Amir; Carrizo, Carlos; Gu, Yalong; Russell, Brandon J; Mislinski, Kathryn; Zhao, Shulei; Cummings, Molly E

2015-11-20

Despite appearing featureless to our eyes, the open ocean is a highly variable environment for polarization-sensitive viewers. Dynamic visual backgrounds coupled with predator encounters from all possible directions make this habitat one of the most challenging for camouflage. We tested open-ocean crypsis in nature by collecting more than 1500 videopolarimetry measurements from live fish from distinct habitats under a variety of viewing conditions. Open-ocean fish species exhibited camouflage that was superior to that of both nearshore fish and mirrorlike surfaces, with significantly higher crypsis at angles associated with predator detection and pursuit. Histological measurements revealed that specific arrangements of reflective guanine platelets in the fish's skin produce angle-dependent polarization modifications for polarocrypsis in the open ocean, suggesting a mechanism for natural selection to shape reflectance properties in this complex environment. Copyright © 2015, American Association for the Advancement of Science.

Photoreduction of Terrigenous Fe-Humic Substances Leads to Bioavailable Iron in Oceans.

PubMed

Blazevic, Amir; Orlowska, Ewelina; Kandioller, Wolfgang; Jirsa, Franz; Keppler, Bernhard K; Tafili-Kryeziu, Myrvete; Linert, Wolfgang; Krachler, Rudolf F; Krachler, Regina; Rompel, Annette

2016-05-23

Humic substances (HS) are important iron chelators responsible for the transport of iron from freshwater systems to the open sea, where iron is essential for marine organisms. Evidence suggests that iron complexed to HS comprises the bulk of the iron ligand pool in near-coastal waters and shelf seas. River-derived HS have been investigated to study their transport to, and dwell in oceanic waters. A library of iron model compounds and river-derived Fe-HS samples were probed in a combined X-ray absorption spectroscopy (XAS) and valence-to-core X-ray emission spectroscopy (VtC-XES) study at the Fe K-edge. The analyses performed revealed that iron complexation in HS samples is only dependent on oxygen-containing HS functional groups, such as carboxyl and phenol. The photoreduction mechanism of Fe III -HS in oceanic conditions into bioavailable aquatic Fe II forms, highlights the importance of river-derived HS as an iron source for marine organisms. Consequently, such mechanisms are a vital component of the upper-ocean iron biogeochemistry cycle.

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

PubMed Central

Alberti, Adriana; Poulain, Julie; Engelen, Stefan; Labadie, Karine; Romac, Sarah; Ferrera, Isabel; Albini, Guillaume; Aury, Jean-Marc; Belser, Caroline; Bertrand, Alexis; Cruaud, Corinne; Da Silva, Corinne; Dossat, Carole; Gavory, Frédérick; Gas, Shahinaz; Guy, Julie; Haquelle, Maud; Jacoby, E'krame; Jaillon, Olivier; Lemainque, Arnaud; Pelletier, Eric; Samson, Gaëlle; Wessner, Mark; Bazire, Pascal; Beluche, Odette; Bertrand, Laurie; Besnard-Gonnet, Marielle; Bordelais, Isabelle; Boutard, Magali; Dubois, Maria; Dumont, Corinne; Ettedgui, Evelyne; Fernandez, Patricia; Garcia, Espérance; Aiach, Nathalie Giordanenco; Guerin, Thomas; Hamon, Chadia; Brun, Elodie; Lebled, Sandrine; Lenoble, Patricia; Louesse, Claudine; Mahieu, Eric; Mairey, Barbara; Martins, Nathalie; Megret, Catherine; Milani, Claire; Muanga, Jacqueline; Orvain, Céline; Payen, Emilie; Perroud, Peggy; Petit, Emmanuelle; Robert, Dominique; Ronsin, Murielle; Vacherie, Benoit; Acinas, Silvia G.; Royo-Llonch, Marta; Cornejo-Castillo, Francisco M.; Logares, Ramiro; Fernández-Gómez, Beatriz; Bowler, Chris; Cochrane, Guy; Amid, Clara; Hoopen, Petra Ten; De Vargas, Colomban; Grimsley, Nigel; Desgranges, Elodie; Kandels-Lewis, Stefanie; Ogata, Hiroyuki; Poulton, Nicole; Sieracki, Michael E.; Stepanauskas, Ramunas; Sullivan, Matthew B.; Brum, Jennifer R.; Duhaime, Melissa B.; Poulos, Bonnie T.; Hurwitz, Bonnie L.; Acinas, Silvia G.; Bork, Peer; Boss, Emmanuel; Bowler, Chris; De Vargas, Colomban; Follows, Michael; Gorsky, Gabriel; Grimsley, Nigel; Hingamp, Pascal; Iudicone, Daniele; Jaillon, Olivier; Kandels-Lewis, Stefanie; Karp-Boss, Lee; Karsenti, Eric; Not, Fabrice; Ogata, Hiroyuki; Pesant, Stéphane; Raes, Jeroen; Sardet, Christian; Sieracki, Michael E.; Speich, Sabrina; Stemmann, Lars; Sullivan, Matthew B.; Sunagawa, Shinichi; Wincker, Patrick; Pesant, Stéphane; Karsenti, Eric; Wincker, Patrick

2017-01-01

A unique collection of oceanic samples was gathered by the Tara Oceans expeditions (2009–2013), targeting plankton organisms ranging from viruses to metazoans, and providing rich environmental context measurements. Thanks to recent advances in the field of genomics, extensive sequencing has been performed for a deep genomic analysis of this huge collection of samples. A strategy based on different approaches, such as metabarcoding, metagenomics, single-cell genomics and metatranscriptomics, has been chosen for analysis of size-fractionated plankton communities. Here, we provide detailed procedures applied for genomic data generation, from nucleic acids extraction to sequence production, and we describe registries of genomics datasets available at the European Nucleotide Archive (ENA, www.ebi.ac.uk/ena). The association of these metadata to the experimental procedures applied for their generation will help the scientific community to access these data and facilitate their analysis. This paper complements other efforts to provide a full description of experiments and open science resources generated from the Tara Oceans project, further extending their value for the study of the world’s planktonic ecosystems. PMID:28763055

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition.

PubMed

Alberti, Adriana; Poulain, Julie; Engelen, Stefan; Labadie, Karine; Romac, Sarah; Ferrera, Isabel; Albini, Guillaume; Aury, Jean-Marc; Belser, Caroline; Bertrand, Alexis; Cruaud, Corinne; Da Silva, Corinne; Dossat, Carole; Gavory, Frédérick; Gas, Shahinaz; Guy, Julie; Haquelle, Maud; Jacoby, E'krame; Jaillon, Olivier; Lemainque, Arnaud; Pelletier, Eric; Samson, Gaëlle; Wessner, Mark; Acinas, Silvia G; Royo-Llonch, Marta; Cornejo-Castillo, Francisco M; Logares, Ramiro; Fernández-Gómez, Beatriz; Bowler, Chris; Cochrane, Guy; Amid, Clara; Hoopen, Petra Ten; De Vargas, Colomban; Grimsley, Nigel; Desgranges, Elodie; Kandels-Lewis, Stefanie; Ogata, Hiroyuki; Poulton, Nicole; Sieracki, Michael E; Stepanauskas, Ramunas; Sullivan, Matthew B; Brum, Jennifer R; Duhaime, Melissa B; Poulos, Bonnie T; Hurwitz, Bonnie L; Pesant, Stéphane; Karsenti, Eric; Wincker, Patrick

2017-08-01

A unique collection of oceanic samples was gathered by the Tara Oceans expeditions (2009-2013), targeting plankton organisms ranging from viruses to metazoans, and providing rich environmental context measurements. Thanks to recent advances in the field of genomics, extensive sequencing has been performed for a deep genomic analysis of this huge collection of samples. A strategy based on different approaches, such as metabarcoding, metagenomics, single-cell genomics and metatranscriptomics, has been chosen for analysis of size-fractionated plankton communities. Here, we provide detailed procedures applied for genomic data generation, from nucleic acids extraction to sequence production, and we describe registries of genomics datasets available at the European Nucleotide Archive (ENA, www.ebi.ac.uk/ena). The association of these metadata to the experimental procedures applied for their generation will help the scientific community to access these data and facilitate their analysis. This paper complements other efforts to provide a full description of experiments and open science resources generated from the Tara Oceans project, further extending their value for the study of the world's planktonic ecosystems.

Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems.

PubMed

Rappé; Vergin; Giovannoni

2000-09-01

In order to extend previous comparisons between coastal marine bacterioplankton communities and their open ocean and freshwater counterparts, here we summarize and provide new data on a clone library of 105 SSU rRNA genes recovered from seawater collected over the western continental shelf of the USA in the Pacific Ocean. Comparisons to previously published data revealed that this coastal bacterioplankton clone library was dominated by SSU rRNA gene phylotypes originally described from surface waters of the open ocean, but also revealed unique SSU rRNA gene lineages of beta Proteobacteria related to those found in clone libraries from freshwater habitats. beta Proteobacteria lineages common to coastal and freshwater samples included members of a clade of obligately methylotrophic bacteria, SSU rRNA genes affiliated with Xylophilus ampelinus, and a clade related to the genus Duganella. In addition, SSU rRNA genes were recovered from such previously recognized marine bacterioplankton SSU rRNA gene clone clusters as the SAR86, SAR11, and SAR116 clusters within the class Proteobacteria, the Roseobacter clade of the alpha subclass of the Proteobacteria, the marine group A/SAR406 cluster, and the marine Actinobacteria clade. Overall, these results support and extend previous observations concerning the global distribution of several marine planktonic prokaryote SSU rRNA gene phylotypes, but also show that coastal bacterioplankton communities contain SSU rRNA gene lineages (and presumably bacterioplankton) shown previously to be prevalent in freshwater habitats.

Fluxes of Ethanol Between the Atmosphere and Oceanic Surface Waters; Implications for the Fate of Biofuel Ethanol Released into the Environment

NASA Astrophysics Data System (ADS)

Avery, G. B., Jr.; Shimizu, M. S.; Willey, J. D.; Mead, R. N.; Skrabal, S. A.; Kieber, R. J.; Lathrop, T. E.; Felix, J. D. D.

2017-12-01

The use of ethanol as a transportation fuel has increased significantly during the past decade in the US. Some ethanol escapes the combustion process in internal combustion engines resulting in its release to the atmosphere. Ethanol can be oxidized photochemically to acetaldehyde and then converted to peroxyacetyl nitrate contributing to air pollution. Therefore it is important to determine the fate ethanol released to the atmosphere. Because of its high water solubility the oceans may act as a sink for ethanol depending on its state of saturation with respect to the gas phase. The purpose of the current study was to determine the relative saturation of oceanic surface waters by making simultaneous measurements of gas phase and surface water concentrations. Data were obtained from four separate cruises ranging from estuarine to open ocean locations in the coast of North Carolina, USA. The majority of estuarine sites were under saturated in ethanol with respect to the gas phase (11-50% saturated) representing a potential sink. Coastal surface waters tended to be supersaturated (135 - 317%) representing a net flux of ethanol to the atmosphere. Open ocean samples were generally at saturation or slightly below saturation (76-99%) indicating equilibrium between the gas and aqueous phases. The results of this study underscore to variable role the oceans play in mitigating the increases in atmospheric ethanol from increased biofuel usage and their impact on air quality.

New Carbon Source From Microbial Degradation of Pre-Production Resin Pellets from the North Pacific Gyre

NASA Astrophysics Data System (ADS)

Neal, A.; Mielke, R.; Stam, C. N.; Gonsior, M.; Tsapin, A. I.; Lee, G.; Leftwich, B.; Narayan, R.; Coleman, H.; Argyropoulos, N.; Sheavly, S. B.; Gorby, Y. A.

2011-12-01

Numerous pollutants are transported through the world's oceans that impact oceanic health. Diffuse sources include land-based runoff, atmospheric depositions, shipping industry wastes, and others. Synthetic polymer marine debris is a multi-faceted problem that includes interactions with environmental toxins, carbon cycling systems, ocean surface chemistry, fine minerals deposition, and nano-particles. The impact that synthetic polymer-microbe interactions have on carbon input into the open ocean is poorly understood. Here we demonstrate that both biotic and abiotic processes contribute to degradation of pre-production resin pellets (PRPs), in open ocean environments and new methodologies to determine carbon loss from this synthetic polymer debris. Our data shows that material degradation of environmental polyethylene PRPs can potentially deposit 13 mg/g to 65 mg/g of carbon per PRP into our marine environments. Environmental pre-production resin pellets were collected on the S/V Kaisei cruise in 2009 which covered over 3,000 nautical miles and sampled over 102,000 m3 of the first 15cm of the water column in the Subtropical Convergence Zone of the North Pacific Gyre. Environmental PRP degradation and the role microbial communities play in this was evaluated using a combination of Fourier transform infrared spectroscopy, environmental scanning electron microscopy, scanning transmission electron microscopy, X-ray microtomography, and ArcGIS mapping. More research is needed to understand the environmental impact of this new carbon source arising from synthetic polymers as they degrade in oceanic environments.

Polychlorinated biphenyls (PCBs) and hexachlorobenzene (HCB) in the equatorial Indian Ocean: temporal trend, continental outflow and air-water exchange.

PubMed

Huang, Yumei; Li, Jun; Xu, Yue; Xu, Weihai; Cheng, Zhineng; Liu, Junwen; Wang, Yan; Tian, Chongguo; Luo, Chunling; Zhang, Gan

2014-03-15

Nineteen pairs of air and seawater samples collected from the equatorial Indian Ocean onboard the Shiyan I from 4/2011 to 5/2011 were analyzed for PCBs and HCB. Gaseous concentrations of ∑(ICES)PCBs (ICES: International Council for the Exploration of the Seas) and HCB were lower than previous data over the study area. Air samples collected near the coast had higher levels of PCBs relative to those collected in the open ocean, which may be influenced by proximity to source regions and air mass origins. Dissolved concentrations of ∑(ICES)PCBs and HCB were 1.4-14 pg L⁻¹ and 0.94-13 pg L⁻¹, with the highest concentrations in the sample collected from Strait of Malacca. Fugacity fractions suggest volatilization of PCBs and HCB from the seawater to air during the cruise, with fluxes of 0.45-34 ng m⁻² d⁻¹ and 0.36-18 ng m⁻² d⁻¹, respectively. Copyright © 2014 Elsevier Ltd. All rights reserved.

Isolation and connectivity: Relationships between periodic connection to the ocean and environmental variables in intermittently closed estuaries

NASA Astrophysics Data System (ADS)

Lill, Adrian Wilfred Thomas; Schallenberg, Marc; Lal, Aparna; Savage, Candida; Closs, Gerard Patrick

2013-08-01

Morphometric and physicochemical variables are key determinants of biotic community structure in estuaries and are influenced by changes to estuary mouth state (open/closed). This study examined and compared the consequences of intermittent connection to the ocean on environmental gradients among estuaries; specifically, how estuary morphology and hydrology relate to physical connection to the sea, and the influence of this relationship on the physicochemical environment. By sampling 20 estuaries across New Zealand and using historical aerial photographs, a continuous index of estuarine connection to the ocean was developed and independently validated using berm elevation derived from Airborne Laser Scanning (ALS) data. Using published literature, this index was compared to equivalent indices in South Africa and Australia. A clear relationship between connections to the ocean, freshwater flow and productivity indices underlie the environmental differences between permanently open and intermittently closed estuaries. Consistent patterns across the Southern Hemisphere, albeit with regional variations in estuarine characteristics, suggest that remote sensing is useful for predicting the physicochemical environment of small estuaries across regions. Principal components analysis for Otago estuaries showed that 40% of measured variation in the environment could be attributed to the gradient of relative connectivity (EOI), or isolation (berm elevation) to the ocean. Evaluating these relationships is central to understanding how global and local environmental changes may affect estuarine connectivity regimes and, ultimately, the functioning of estuarine ecosystems.

Plastic debris in the open ocean

PubMed Central

Cózar, Andrés; Echevarría, Fidel; González-Gordillo, J. Ignacio; Irigoien, Xabier; Úbeda, Bárbara; Hernández-León, Santiago; Palma, Álvaro T.; Navarro, Sandra; García-de-Lomas, Juan; Ruiz, Andrea; Fernández-de-Puelles, María L.; Duarte, Carlos M.

2014-01-01

There is a rising concern regarding the accumulation of floating plastic debris in the open ocean. However, the magnitude and the fate of this pollution are still open questions. Using data from the Malaspina 2010 circumnavigation, regional surveys, and previously published reports, we show a worldwide distribution of plastic on the surface of the open ocean, mostly accumulating in the convergence zones of each of the five subtropical gyres with comparable density. However, the global load of plastic on the open ocean surface was estimated to be on the order of tens of thousands of tons, far less than expected. Our observations of the size distribution of floating plastic debris point at important size-selective sinks removing millimeter-sized fragments of floating plastic on a large scale. This sink may involve a combination of fast nano-fragmentation of the microplastic into particles of microns or smaller, their transference to the ocean interior by food webs and ballasting processes, and processes yet to be discovered. Resolving the fate of the missing plastic debris is of fundamental importance to determine the nature and significance of the impacts of plastic pollution in the ocean. PMID:24982135

Plastic debris in the open ocean.

PubMed

Cózar, Andrés; Echevarría, Fidel; González-Gordillo, J Ignacio; Irigoien, Xabier; Ubeda, Bárbara; Hernández-León, Santiago; Palma, Alvaro T; Navarro, Sandra; García-de-Lomas, Juan; Ruiz, Andrea; Fernández-de-Puelles, María L; Duarte, Carlos M

2014-07-15

There is a rising concern regarding the accumulation of floating plastic debris in the open ocean. However, the magnitude and the fate of this pollution are still open questions. Using data from the Malaspina 2010 circumnavigation, regional surveys, and previously published reports, we show a worldwide distribution of plastic on the surface of the open ocean, mostly accumulating in the convergence zones of each of the five subtropical gyres with comparable density. However, the global load of plastic on the open ocean surface was estimated to be on the order of tens of thousands of tons, far less than expected. Our observations of the size distribution of floating plastic debris point at important size-selective sinks removing millimeter-sized fragments of floating plastic on a large scale. This sink may involve a combination of fast nano-fragmentation of the microplastic into particles of microns or smaller, their transference to the ocean interior by food webs and ballasting processes, and processes yet to be discovered. Resolving the fate of the missing plastic debris is of fundamental importance to determine the nature and significance of the impacts of plastic pollution in the ocean.

Barrier island breach evolution: Alongshore transport and bay-ocean pressure gradient interactions

USGS Publications Warehouse

Safak, Ilgar; Warner, John C.; List, Jeffrey

2016-01-01

Physical processes controlling repeated openings and closures of a barrier island breach between a bay and the open ocean are studied using aerial photographs and atmospheric and hydrodynamic observations. The breach site is located on Pea Island along the Outer Banks, separating Pamlico Sound from the Atlantic Ocean. Wind direction was a major control on the pressure gradients between the bay and the ocean to drive flows that initiate or maintain the breach opening. Alongshore sediment flux was found to be a major contributor to breach closure. During the analysis period from 2011 to 2016, three hurricanes had major impacts on the breach. First, Hurricane Irene opened the breach with wind-driven flow from bay to ocean in August 2011. Hurricane Sandy in October 2012 quadrupled the channel width from pressure gradient flows due to water levels that were first higher on the ocean side and then higher on the bay side. The breach closed sometime in Spring 2013, most likely due to an event associated with strong alongshore sediment flux but minimal ocean-bay pressure gradients. Then, in July 2014, Hurricane Arthur briefly opened the breach again from the bay side, in a similar fashion to Irene. In summary, opening and closure of breaches are shown to follow a dynamic and episodic balance between along-channel pressure gradient driven flows and alongshore sediment fluxes.

The effect of surface irradiance on the absorption spectrum of chromophoric dissolved organic matter in the global ocean

NASA Astrophysics Data System (ADS)

Swan, Chantal M.; Nelson, Norman B.; Siegel, David A.; Kostadinov, Tihomir S.

2012-05-01

The cycling pathways of chromophoric dissolved organic matter (CDOM) within marine systems must be constrained to better assess the impact of CDOM on surface ocean photochemistry and remote sensing of ocean color. Photobleaching, the loss of absorption by CDOM due to light exposure, is the primary sink for marine CDOM. Herein the susceptibility of CDOM to photobleaching by sea surface-level solar radiation was examined in 15 samples collected from wide-ranging open ocean regimes. Samples from the Pacific, Atlantic, Indian and Southern Oceans were irradiated over several days with full-spectrum light under a solar simulator at in situ temperature in order to measure photobleaching rate and derive an empirical matrix, ɛsurf (m-1 μEin-1), which quantifies the effect of surface irradiance on the spectral absorption of CDOM. Irradiation responses among the ocean samples were similar within the ultraviolet (UV) region of the spectrum spanning 300-360 nm, generally exhibiting a decrease in the CDOM absorption coefficient (m-1) and concomitant increase in the CDOM spectral slope parameter, S (nm-1). However, an unexpected irradiation-induced increase in CDOM absorption between approximately 360 and 500 nm was observed for samples from high-nutrient low-chlorophyll (HNLC) environments. This finding was linked to the presence of dissolved nitrate and may explain discrepancies in action spectra for dimethylsulfide (DMS) photobleaching observed between the Equatorial Pacific and Subtropical North Atlantic Oceans. The nitrate-to-phosphate ratio explained 27-70% of observed variability in ɛsurf at observation wavelengths of 330-440 nm, while the initial spectral slope of the samples explained up to 52% of variability in ɛsurf at observation wavelengths of 310-330 nm. These results suggest that the biogeochemical and solar exposure history of the water column, each of which influence the chemical character and thus the spectral quality of CDOM and its photoreactivity, are the main factors regulating the susceptibility of CDOM to photodegradation in the surface ocean. The ɛsurf parameter reported herein may be applied to remote sensing retrievals of CDOM to estimate photobleaching at the surface on regional to global scales.

Hydrogenetic Ferromanganese Crusts of the California Continental Margin

NASA Astrophysics Data System (ADS)

Conrad, Tracey A.

Hydrogenetic Ferromanganese (Fe-Mn) crusts grow from seawater and in doing so sequester elements of economic interest and serve as archives of past seawater chemistry. Ferromanganese crusts have been extensively studied in open-ocean environments. However, few studies have examined continent-proximal Fe-Mn crusts especially from the northeast Pacific. This thesis addresses Fe-Mn crusts within the northeast Pacific California continental margin (CCM), which is a dynamic geological and oceanographic environment. In the first of three studies, I analyzed the chemical and mineralogical composition of Fe-Mn crusts and show that continental-proximal processes greatly influence the chemistry and mineralogy of CCM Fe-Mn crusts. When compared to global open-ocean Fe-Mn crusts, CCM crusts have higher concentrations of iron, silica, and thorium with lower concentrations of many elements of economic interest including manganese, cobalt, and tellurium, among other elements. The mineralogy of CCM Fe-Mn crusts is also unique with more birnessite and todorokite present than found in open-ocean samples. Unlike open-ocean Fe-Mn crusts, carbonate-fluorapatite is not present in CCM crusts. This lack of phosphatization makes CCM Fe-Mn crusts excellent candidates for robust paleoceanography records. The second and third studies in this thesis use isotope geochemistry on select CCM Fe-Mn crusts from four seamounts in the CCM to study past terrestrial inputs into the CCM and sources and behavior of Pb and Nd isotopes over the past 7 million years along the northeast Pacific margin. The second study focuses on riverine inputs into the Monterey Submarine Canyon System and sources of the continental material. Osmium isotopes in the crusts are compared to the Cenozoic Os seawater curve to develop an age model for the samples that show the crusts range in age of initiation of crust growth from approximately 20 to 6 Myr. Lead and neodymium isotopes measured in select Fe-Mn crusts show that large amounts of terrestrial material entered the CCM via the Monterey Canyon from prior to 6.8+/-0.5 until 4.5 +/-0.5 Myr ago. These data combined with reconstructions of the paleo-coastline indicate that incision of the modern Monterey Canyon started around 7 Myr ago. Isotope plots of potential source regions indicate that the source of the material is the border of the southern Sierra Nevada and western Basin and Range. This answers a long-standing and fundamental question about the timing and formation of the Monterey Canyon, the dominant feature of the Monterey Bay. The third study presented here uses the differences in lead and neodymium isotopic values in CCM Fe-Mn crusts over time compared to open-ocean Pacific, North Pacific, and Arctic Ocean Fe-Mn crusts to identify regional time-series trends and sources for these important oceanographic tracers. I found that sediment fluxes and inputs of terrestrial material from North American rivers effects the lead and neodymium isotope composition of regional seawater.

The Great Chilean Tsunamis of 2010, 2014 and 2015 on the Coast and Offshore of Mexico: Comparative Features Based on Open-Ocean Energy Parameterization

NASA Astrophysics Data System (ADS)

Rabinovich, A.; Zaytsev, O.; Thomson, R.

2016-12-01

The three recent great earthquakes offshore of Chile on 27 February 2010 (Maule, Mw 8.8), 1 April 2014 (Iquique, Mw 8.2) and 16 September 2015 (Illapel, Mw 8.3) generated major trans-oceanic tsunamis that spread throughout the entire Pacific Ocean and were measured by numerous coastal tide gauges and open-ocean DART stations. Statistical and spectral analyses of the tsunami waves from the three events recorded on the Pacific coast of Mexico enabled us to compare the events and to identify coastal "hot spots", regions with maximum tsunami risk. Based on joint spectral analyses of tsunamis and background noise, we have developed a method for reconstructing the "true" tsunami spectra in the deep ocean. The "reconstructed" open-ocean tsunami spectra are in excellent agreement with the actual tsunami spectra evaluated from direct analysis of the DART records offshore of Mexico. We have further used the spectral estimates to parameterize the energy of the three Chilean tsunamis based on the total open-ocean tsunami energy and frequency content of the individual events.

INT (2-(4-Iodophenyl)-3-(4-Nitrophenyl)-5-(Phenyl) Tetrazolium Chloride) Is Toxic to Prokaryote Cells Precluding Its Use with Whole Cells as a Proxy for In Vivo Respiration.

PubMed

Villegas-Mendoza, Josué; Cajal-Medrano, Ramón; Maske, Helmut

2015-11-01

Prokaryote respiration is expected to be responsible for more than half of the community respiration in the ocean, but the lack of a practical method to measure the rate of prokaryote respiration in the open ocean resulted in very few published data leaving the role of organotrophic prokaryotes open to debate. Oxygen consumption rates of oceanic prokaryotes measured with current methods may be biased due to pre-incubation size filtration and long incubation times both of which can change the physiological and taxonomic profile of the sample during the incubation period. In vivo INT reduction has been used in terrestrial samples to estimate respiration rates, and recently, the method was introduced and applied in aquatic ecology. We measured oxygen consumption rates and in vivo INT reduction to formazan in cultures of marine bacterioplankton communities, Vibrio harveyi and the eukaryote Isochrysis galbana. For prokaryotes, we observed a decrease in oxygen consumption rates with increasing INT concentrations between 0.05 and 1 mM. Time series after 0.5 mM INT addition to prokaryote samples showed a burst of in vivo INT reduction to formazan and a rapid decline of oxygen consumption rates to zero within less than an hour. Our data for non-axenic eukaryote cultures suggest poisoning of the eukaryote. Prokaryotes are clearly poisoned by INT on time scales of less than 1 h, invalidating the interpretation of in vivo INT reduction to formazan as a proxy for oxygen consumption rates.

Variations of the Organic Matter Composition in the Sea Surface Microlayer: A Comparison between Open Ocean, Coastal, and Upwelling Sites Off the Peruvian Coast

PubMed Central

Zäncker, Birthe; Bracher, Astrid; Röttgers, Rüdiger; Engel, Anja

2017-01-01

The sea surface microlayer (SML) is the thin boundary layer between the ocean and the atmosphere, making it important for air-sea exchange processes. However, little is known about what controls organic matter composition in the SML. In particular, there are only few studies available on the differences of the SML of various oceanic systems. Here, we compared the organic matter and neuston species composition in the SML and the underlying water (ULW) at 11 stations with varying distance from the coast in the Peruvian upwelling regime, a system with high emissions of climate relevant trace gases, such as N2O and CO2. In the open ocean, organic carbon, and amino acids were highly enriched in the SML compared to the ULW. The enrichment decreased at the coastal stations and vanished in the upwelling regime. At the same time, the degradation of organic matter increased from the open ocean to the upwelling stations. This suggests that in the open ocean, upward transport processes or new production of organic matter within the SML are faster than degradation processes. Phytoplankton was generally not enriched in the SML, one group though, the Trichodesmium-like TrL (possibly containing Trichodesmium), were enriched in the open ocean but not in the upwelling region indicating that they find a favorable habitat in the open ocean SML. Our data show that the SML is a distinct habitat; its composition is more similar among different systems than between SML and ULW of a single station. Generally the enrichment of organic matter is assumed to be reduced when encountering low primary production and high wind speeds. However, our study shows the highest enrichments of organic matter in the open ocean which had the lowest primary production and the highest wind speeds. PMID:29375483

Variations of the Organic Matter Composition in the Sea Surface Microlayer: A Comparison between Open Ocean, Coastal, and Upwelling Sites Off the Peruvian Coast.

PubMed

Zäncker, Birthe; Bracher, Astrid; Röttgers, Rüdiger; Engel, Anja

2017-01-01

The sea surface microlayer (SML) is the thin boundary layer between the ocean and the atmosphere, making it important for air-sea exchange processes. However, little is known about what controls organic matter composition in the SML. In particular, there are only few studies available on the differences of the SML of various oceanic systems. Here, we compared the organic matter and neuston species composition in the SML and the underlying water (ULW) at 11 stations with varying distance from the coast in the Peruvian upwelling regime, a system with high emissions of climate relevant trace gases, such as N 2 O and CO 2 . In the open ocean, organic carbon, and amino acids were highly enriched in the SML compared to the ULW. The enrichment decreased at the coastal stations and vanished in the upwelling regime. At the same time, the degradation of organic matter increased from the open ocean to the upwelling stations. This suggests that in the open ocean, upward transport processes or new production of organic matter within the SML are faster than degradation processes. Phytoplankton was generally not enriched in the SML, one group though, the Trichodesmium -like TrL (possibly containing Trichodesmium ), were enriched in the open ocean but not in the upwelling region indicating that they find a favorable habitat in the open ocean SML. Our data show that the SML is a distinct habitat; its composition is more similar among different systems than between SML and ULW of a single station. Generally the enrichment of organic matter is assumed to be reduced when encountering low primary production and high wind speeds. However, our study shows the highest enrichments of organic matter in the open ocean which had the lowest primary production and the highest wind speeds.

Diazotrophic bacterioplankton in a coral reef lagoon: phylogeny, diel nitrogenase expression and response to phosphate enrichment.

PubMed

Hewson, Ian; Moisander, Pia H; Morrison, Amanda E; Zehr, Jonathan P

2007-05-01

We investigated diazotrophic bacterioplankton assemblage composition in the Heron Reef lagoon (Great Barrier Reef, Australia) using culture-independent techniques targeting the nifH fragment of the nitrogenase gene. Seawater was collected at 3 h intervals over a period of 72 h (i.e. over diel as well as tidal cycles). An incubation experiment was also conducted to assess the impact of phosphate (PO(4)3*) availability on nifH expression patterns. DNA-based nifH libraries contained primarily sequences that were most similar to nifH from sediment, microbial mat and surface-associated microorganisms, with a few sequences that clustered with typical open ocean phylotypes. In contrast to genomic DNA sequences, libraries prepared from gene transcripts (mRNA amplified by reverse transcription-polymerase chain reaction) were entirely cyanobacterial and contained phylotypes similar to those observed in open ocean plankton. The abundance of Trichodesmium and two uncultured cyanobacterial phylotypes from previous studies (group A and group B) were studied by quantitative-polymerase chain reaction in the lagoon samples. These were detected as transcripts, but were not detected in genomic DNA. The gene transcript abundance of these phylotypes demonstrated variability over several diel cycles. The PO(4)3* enrichment experiment had a clearer pattern of gene expression over diel cycles than the lagoon sampling, however PO(4)3* additions did not result in enhanced transcript abundance relative to control incubations. The results suggest that a number of diazotrophs in bacterioplankton of the reef lagoon may originate from sediment, coral or beachrock surfaces, sloughing into plankton with the flooding tide. The presence of typical open ocean phylotype transcripts in lagoon bacterioplankton may indicate that they are an important component of the N cycle of the coral reef.

Metagenomic Analysis of the Indian Ocean Picocyanobacterial Community: Structure, Potential Function and Evolution

PubMed Central

Díez, Beatriz; Nylander, Johan A. A.; Ininbergs, Karolina; Dupont, Christopher L.; Allen, Andrew E.; Yooseph, Shibu; Rusch, Douglas B.; Bergman, Birgitta

2016-01-01

Unicellular cyanobacteria are ubiquitous photoautotrophic microbes that contribute substantially to global primary production. Picocyanobacteria such as Synechococcus and Prochlorococcus depend on chlorophyll a-binding protein complexes to capture light energy. In addition, Synechococcus has accessory pigments organized into phycobilisomes, and Prochlorococcus contains chlorophyll b. Across a surface water transect spanning the sparsely studied tropical Indian Ocean, we examined Synechococcus and Prochlorococcus occurrence, taxonomy and habitat preference in an evolutionary context. Shotgun sequencing of size fractionated microbial communities from 0.1 μm to 20 μm and subsequent phylogenetic analysis indicated that cyanobacteria account for up to 15% of annotated reads, with the genera Prochlorococcus and Synechococcus comprising 90% of the cyanobacterial reads, even in the largest size fraction (3.0–20 mm). Phylogenetic analyses of cyanobacterial light-harvesting genes (chl-binding pcb/isiA, allophycocyanin (apcAB), phycocyanin (cpcAB) and phycoerythin (cpeAB)) mostly identified picocyanobacteria clades comprised of overlapping sequences obtained from Indian Ocean, Atlantic and/or Pacific Oceans samples. Habitat reconstructions coupled with phylogenetic analysis of the Indian Ocean samples suggested that large Synechococcus-like ancestors in coastal waters expanded their ecological niche towards open oligotrophic waters in the Indian Ocean through lineage diversification and associated streamlining of genomes (e.g. loss of phycobilisomes and acquisition of Chl b); resulting in contemporary small celled Prochlorococcus. Comparative metagenomic analysis with picocyanobacteria populations in other oceans suggests that this evolutionary scenario may be globally important. PMID:27196065

Metagenomic Analysis of the Indian Ocean Picocyanobacterial Community: Structure, Potential Function and Evolution

DOE PAGES

Diez, Beatriz; Nylander, Johan A. A.; Ininbergs, Karolina; ...

2016-05-19

Unicellular cyanobacteria are ubiquitous photoautotrophic microbes that contribute substantially to global primary production. Picocyanobacteria such as Synechococcus and Prochlorococcus depend on chlorophyll a-binding protein complexes to capture light energy. In addition, Synechococcus has accessory pigments organized into phycobilisomes, and Prochlorococcus contains chlorophyll b. Across a surface water transect spanning the sparsely studied tropical Indian Ocean, we examined Synechococcus and Prochlorococcus occurrence, taxonomy and habitat preference in an evolutionary context. Shotgun sequencing of size fractionated microbial communities from 0.1 μm to 20 μm and subsequent phylogenetic analysis indicated that cyanobacteria account for up to 15% of annotated reads, with the generamore » Prochlorococcus and Synechococcus comprising 90% of the cyanobacterial reads, even in the largest size fraction (3.0–20 mm). Phylogenetic analyses of cyanobacterial light-harvesting genes (chl-binding pcb/isiA, allophycocyanin ( apcAB), phycocyanin ( cpcAB) and phycoerythin ( cpeAB)) mostly identified picocyanobacteria clades comprised of overlapping sequences obtained from Indian Ocean, Atlantic and/or Pacific Oceans samples. Habitat reconstructions coupled with phylogenetic analysis of the Indian Ocean samples suggested that large Synechococcus-like ancestors in coastal waters expanded their ecological niche towards open oligotrophic waters in the Indian Ocean through lineage diversification and associated streamlining of genomes (e.g. loss of phycobilisomes and acquisition of Chl b); resulting in contemporary small celled Prochlorococcus. As a result, comparative metagenomic analysis with picocyanobacteria populations in other oceans suggests that this evolutionary scenario may be globally important.« less

Metagenomic Analysis of the Indian Ocean Picocyanobacterial Community: Structure, Potential Function and Evolution

DOE Office of Scientific and Technical Information (OSTI.GOV)

Diez, Beatriz; Nylander, Johan A. A.; Ininbergs, Karolina

Unicellular cyanobacteria are ubiquitous photoautotrophic microbes that contribute substantially to global primary production. Picocyanobacteria such as Synechococcus and Prochlorococcus depend on chlorophyll a-binding protein complexes to capture light energy. In addition, Synechococcus has accessory pigments organized into phycobilisomes, and Prochlorococcus contains chlorophyll b. Across a surface water transect spanning the sparsely studied tropical Indian Ocean, we examined Synechococcus and Prochlorococcus occurrence, taxonomy and habitat preference in an evolutionary context. Shotgun sequencing of size fractionated microbial communities from 0.1 μm to 20 μm and subsequent phylogenetic analysis indicated that cyanobacteria account for up to 15% of annotated reads, with the generamore » Prochlorococcus and Synechococcus comprising 90% of the cyanobacterial reads, even in the largest size fraction (3.0–20 mm). Phylogenetic analyses of cyanobacterial light-harvesting genes (chl-binding pcb/isiA, allophycocyanin ( apcAB), phycocyanin ( cpcAB) and phycoerythin ( cpeAB)) mostly identified picocyanobacteria clades comprised of overlapping sequences obtained from Indian Ocean, Atlantic and/or Pacific Oceans samples. Habitat reconstructions coupled with phylogenetic analysis of the Indian Ocean samples suggested that large Synechococcus-like ancestors in coastal waters expanded their ecological niche towards open oligotrophic waters in the Indian Ocean through lineage diversification and associated streamlining of genomes (e.g. loss of phycobilisomes and acquisition of Chl b); resulting in contemporary small celled Prochlorococcus. As a result, comparative metagenomic analysis with picocyanobacteria populations in other oceans suggests that this evolutionary scenario may be globally important.« less

Bioenergetic response by steelhead to variation in diet, thermal habitat, and climate in the north Pacific Ocean

USGS Publications Warehouse

Atcheson, Margaret E.; Myers, Katherine W.; Beauchamp, David A.; Mantua, Nathan J.

2012-01-01

Energetic responses of steelhead Oncorhynchus mykiss to climate-driven changes in marine conditions are expected to affect the species’ ocean distribution, feeding, growth, and survival. With a unique 18-year data series (1991–2008) for steelhead sampled in the open ocean, we simulated interannual variation in prey consumption and growth efficiency of steelhead using a bioenergetics model to evaluate the temperature-dependent growth response of steelhead to past climate events and to estimate growth potential of steelhead under future climate scenarios. Our results showed that annual ocean growth of steelhead is highly variable depending on prey quality, consumption rates, total consumption, and thermal experience. At optimal growing temperatures, steelhead can compensate for a low-energy diet by increasing consumption rates and consuming more prey, if available. Our findings suggest that steelhead have a narrow temperature window in which to achieve optimal growth, which is strongly influenced by climate-driven changes in ocean temperature.

Towards the impact of eddies on the response of the global ocean circulation to Southern Ocean gateway opening

NASA Astrophysics Data System (ADS)

Viebahn, Jan; von der Heydt, Anna S.; Dijkstra, Henk A.

2014-05-01

During the past 65 Million (Ma) years, Earth's climate has undergone a major change from warm 'greenhouse' to colder 'icehouse' conditions with extensive ice sheets in the polar regions of both hemispheres. The Eocene-Oligocene (~34 Ma) and Oligocene-Miocene (~23 Ma) boundaries reflect major transitions in Cenozoic global climate change. Proposed mechanisms of these transitions include reorganization of ocean circulation due to critical gateway opening/deepening, changes in atmospheric CO2-concentration, and feedback mechanisms related to land-ice formation. A long-standing hypothesis is that the formation of the Antarctic Circumpolar Current due to opening/deepening of Southern Ocean gateways led to glaciation of the Antarctic continent. However, while this hypothesis remains controversial, its assessment via coupled climate model simulations depends crucially on the spatial resolution in the ocean component. More precisely, only high-resolution modeling of the turbulent ocean circulation is capable of adequately describing reorganizations in the ocean flow field and related changes in turbulent heat transport. In this study, for the first time results of a high-resolution (0.1° horizontally) realistic global ocean model simulation with a closed Drake Passage are presented. Changes in global ocean temperatures, heat transport, and ocean circulation (e.g., Meridional Overturning Circulation and Antarctic Coastal Current) are established by comparison with an open Drake Passage high-resolution reference simulation. Finally, corresponding low-resolution simulations are also analyzed. The results highlight the essential impact of the ocean eddy field in palaeoclimatic change.

Molecular-biological sensing in aquatic environments: recent developments and emerging capabilities.

PubMed

McQuillan, Jonathan S; Robidart, Julie C

2017-06-01

Aquatic microbial communities are central to biogeochemical processes that maintain Earth's habitability. However, there is a significant paucity of data collected from these species in their natural environment. To address this, a suite of ocean-deployable sampling and sensing instrumentation has been developed to retrieve, archive and analyse water samples and their microbial fraction using state of the art genetic assays. Recent deployments have shed new light onto the role microbes play in essential ocean processes and highlight the risks they may pose to coastal populations. Although current designs are generally too large, complex and expensive for widespread use, a host of emerging bio-analytical technologies have the potential to revolutionise this field and open new possibilities in aquatic microbial metrology. Copyright © 2016 Elsevier Ltd. All rights reserved.

Eighty-five million years of Pacific Ocean gyre ecosystem structure: long-term stability marked by punctuated change.

PubMed

Sibert, Elizabeth; Norris, Richard; Cuevas, Jose; Graves, Lana

2016-05-25

While the history of taxonomic diversification in open ocean lineages of ray-finned fish and elasmobranchs is increasingly known, the evolution of their roles within the open ocean ecosystem remains poorly understood. To assess the relative importance of these groups through time, we measured the accumulation rate of microfossil fish teeth and elasmobranch dermal denticles (ichthyoliths) in deep-sea sediment cores from the North and South Pacific gyres over the past 85 million years (Myr). We find three distinct and stable open ocean ecosystem structures, each defined by the relative and absolute abundance of elasmobranch and ray-finned fish remains. The Cretaceous Ocean (pre-66 Ma) was characterized by abundant elasmobranch denticles, but low abundances of fish teeth. The Palaeogene Ocean (66-20 Ma), initiated by the Cretaceous/Palaeogene mass extinction, had nearly four times the abundance of fish teeth compared with elasmobranch denticles. This Palaeogene Ocean structure remained stable during the Eocene greenhouse (50 Ma) and the Eocene-Oligocene glaciation (34 Ma), despite large changes in the overall accumulation of both groups during those intervals, suggesting that climate change is not a primary driver of ecosystem structure. Dermal denticles virtually disappeared from open ocean ichthyolith assemblages approximately 20 Ma, while fish tooth accumulation increased dramatically in variability, marking the beginning of the Modern Ocean. Together, these results suggest that open ocean fish community structure is stable on long timescales, independent of total production and climate change. The timing of the abrupt transitions between these states suggests that the transitions may be due to interactions with other, non-preserved pelagic consumer groups. © 2016 The Author(s).

Eighty-five million years of Pacific Ocean gyre ecosystem structure: long-term stability marked by punctuated change

PubMed Central

Norris, Richard; Cuevas, Jose; Graves, Lana

2016-01-01

While the history of taxonomic diversification in open ocean lineages of ray-finned fish and elasmobranchs is increasingly known, the evolution of their roles within the open ocean ecosystem remains poorly understood. To assess the relative importance of these groups through time, we measured the accumulation rate of microfossil fish teeth and elasmobranch dermal denticles (ichthyoliths) in deep-sea sediment cores from the North and South Pacific gyres over the past 85 million years (Myr). We find three distinct and stable open ocean ecosystem structures, each defined by the relative and absolute abundance of elasmobranch and ray-finned fish remains. The Cretaceous Ocean (pre-66 Ma) was characterized by abundant elasmobranch denticles, but low abundances of fish teeth. The Palaeogene Ocean (66–20 Ma), initiated by the Cretaceous/Palaeogene mass extinction, had nearly four times the abundance of fish teeth compared with elasmobranch denticles. This Palaeogene Ocean structure remained stable during the Eocene greenhouse (50 Ma) and the Eocene–Oligocene glaciation (34 Ma), despite large changes in the overall accumulation of both groups during those intervals, suggesting that climate change is not a primary driver of ecosystem structure. Dermal denticles virtually disappeared from open ocean ichthyolith assemblages approximately 20 Ma, while fish tooth accumulation increased dramatically in variability, marking the beginning of the Modern Ocean. Together, these results suggest that open ocean fish community structure is stable on long timescales, independent of total production and climate change. The timing of the abrupt transitions between these states suggests that the transitions may be due to interactions with other, non-preserved pelagic consumer groups. PMID:27194702

Software framework for prognostic health monitoring of ocean-based power generation

NASA Astrophysics Data System (ADS)

Bowren, Mark

On August 5, 2010 the U.S. Department of Energy (DOE) has designated the Center for Ocean Energy Technology (COET) at Florida Atlantic University (FAU) as a national center for ocean energy research and development of prototypes for open-ocean power generation. Maintenance on ocean-based machinery can be very costly. To avoid unnecessary maintenance it is necessary to monitor the condition of each machine in order to predict problems. This kind of prognostic health monitoring (PHM) requires a condition-based maintenance (CBM) system that supports diagnostic and prognostic analysis of large amounts of data. Research in this field led to the creation of ISO13374 and the development of a standard open-architecture for machine condition monitoring. This thesis explores an implementation of such a system for ocean-based machinery using this framework and current open-standard technologies.

A census of marine zooplankton in the tropical/subtropical Atlantic from the surface to 5000 m.

NASA Astrophysics Data System (ADS)

Wiebe, P. H.; Bucklin, A.; Madin, L.; Angel, M. V.; Sutton, T.; Pages, F.; Hopcroft, R. R.

2006-12-01

Zooplankton from tropical/subtropical waters in the Atlantic Ocean were sampled from the surface to 5000 m, with a particular focus on the mesopelagic, bathypelagic, abyssopelagic zones. Sampling, on a cruise sponsored by the NOAA Ocean Exploration Program and the Census of Marine Life, was conducted at five stations from the northern Sargasso Sea to the equatorial waters northeast of Brazil. Environmental data and zooplankton samples were collected using three Multiple Opening/Closing Nets and Environmental Sensing Systems (MOCNESS): a 10-m opening/closing trawl with 335-um mesh nets sampled from 5000 to 1000 m and two smaller MOCNESS with similar or smaller mesh sampled the upper 1000 m. Ring net and water bottle casts, and blue-water SCUBA diving were also carried out. Samples were analyzed at sea using traditional morphological taxonomic approaches by a team of experts, followed by molecular systematic analysis, including determination of a DNA barcode (i.e., short DNA sequence for species recognition) for each species. Over 500 species were identified onboard ship; more than 1000 specimens were placed in a queue for barcoding; 87 species were barcoded at sea. For several taxonomic groups, a significant fraction of the region's species were collected and identified. Sixty-five species of planktonic ostracods were identified at sea out of the 140 known for the North Atlantic Ocean, with at least six undescribed species collected and the first DNA barcode for a planktonic ostracod obtained. At-sea analysis of samples also yielded identified specimens for more than 40 species of molluscs (pteropods, heteropods, etc.), more than 100 species of jellyfish, several hundred species of copepods, and more than 100 species of fish. In all, taxonomists estimated that at least 12 - 15 new species will be described from this effort. The special deployment of trawls to sample large volumes at great depths for small zooplankton yielded preliminary confirmation that species diversity is high (with many more species yet to be captured and studied), but abundance is low.

Ocean Research - Perspectives from an international Ocean Research Coordination Network

NASA Astrophysics Data System (ADS)

Pearlman, Jay; Williams, Albert, III

2013-04-01

The need for improved coordination in ocean observations is more urgent now given the issues of climate change, sustainable food sources and increased need for energy. Ocean researchers must work across disciplines to provide policy makers with clear and understandable assessments of the state of the ocean. With advances in technology, not only in observation, but also communication and computer science, we are in a new era where we can answer questions asked over the last 100 years at the time and space scales that are relevant. Programs like GLOBEC moved us forward but we are still challenged by the disciplinary divide. Interdisciplinary problem solving must be addressed not only by the exchange of data between the many sides, but through levels where questions require day-to-day collaboration. A National Science Foundation-funded Research Coordination Network (RCN) is addressing approaches for improving interdisciplinary research capabilities in the ocean sciences. During the last year, the RCN had a working group for Open Data led by John Orcutt, Peter Pissierssens and Albert Williams III. The teams has focused on three areas: 1. Data and Information formats and standards; 2. Data access models (including IPR, business models for open data, data policies,...); 3. Data publishing, data citation. There has been a significant trend toward free and open access to data in the last few years. In 2007, the US announced that Landsat data would be available at no charge. Float data from the US (NDBC), JCOMM and OceanSites offer web-based access. The IODE is developing its Ocean Data Portal giving immediate and free access to ocean data. However, from the aspect of long-term collaborations across communities, this global trend is less robust than might appear at the surface. While there are many standard data formats for data exchange, there is not yet widespread uniformity in their adoption. Use of standard data formats can be encouraged in several ways: sponsors of observational science programs can encourage or require standard formats for data storage; scientific journals can require that data in support of publication be deposited in a standard format; and finally, communities of scientists can recognize that observational or model-developed data sets are professional contributions deserving citation. Even with standards for exchange, the availability of data and models can limited by cultural and policy issues. Investigators on NSF grants are expected to share with other researchers the primary data, samples, physical collections and other supporting materials created under their grants. Broader approaches to data availability are seen in the model of the human genome project; according to the Bermuda Agreement (1996), the funding agencies required that all scientists working on the human genome make the data quickly and openly available. Is this a model for ocean data? This presentation will examine the steps forward in stimulating interdisciplinary research through data exchange and better addressing the gaps in communication and approaches that are still common across the ocean sciences.

Estimating the Cross-Shelf Export of Riverine Materials: Part 2. Estimates of Global Freshwater and Nutrient Export

NASA Astrophysics Data System (ADS)

Izett, Jonathan G.; Fennel, Katja

2018-02-01

Rivers deliver large amounts of fresh water, nutrients, and other terrestrially derived materials to the coastal ocean. Where inputs accumulate on the shelf, harmful effects such as hypoxia and eutrophication can result. In contrast, where export to the open ocean is efficient riverine inputs contribute to global biogeochemical budgets. Assessing the fate of riverine inputs is difficult on a global scale. Global ocean models are generally too coarse to resolve the relatively small scale features of river plumes. High-resolution regional models have been developed for individual river plume systems, but it is impractical to apply this approach globally to all rivers. Recently, generalized parameterizations have been proposed to estimate the export of riverine fresh water to the open ocean (Izett & Fennel, 2018, https://doi.org/10.1002/2017GB005667; Sharples et al., 2017, https://doi.org/10.1002/2016GB005483). Here the relationships of Izett and Fennel, https://doi.org/10.1002/2017GB005667 are used to derive global estimates of open-ocean export of fresh water and dissolved inorganic silicate, dissolved organic carbon, and dissolved organic and inorganic phosphorus and nitrogen. We estimate that only 15-53% of riverine fresh water reaches the open ocean directly in river plumes; nutrient export is even less efficient because of processing on continental shelves. Due to geographic differences in riverine nutrient delivery, dissolved silicate is the most efficiently exported to the open ocean (7-56.7%), while dissolved inorganic nitrogen is the least efficiently exported (2.8-44.3%). These results are consistent with previous estimates and provide a simple way to parameterize export to the open ocean in global models.

High evolutionary potential of marine zooplankton

PubMed Central

Peijnenburg, Katja T C A; Goetze, Erica

2013-01-01

Abstract Open ocean zooplankton often have been viewed as slowly evolving species that have limited capacity to respond adaptively to changing ocean conditions. Hence, attention has focused on the ecological responses of zooplankton to current global change, including range shifts and changing phenology. Here, we argue that zooplankton also are well poised for evolutionary responses to global change. We present theoretical arguments that suggest plankton species may respond rapidly to selection on mildly beneficial mutations due to exceptionally large population size, and consider the circumstantial evidence that supports our inference that selection may be particularly important for these species. We also review all primary population genetic studies of open ocean zooplankton and show that genetic isolation can be achieved at the scale of gyre systems in open ocean habitats (100s to 1000s of km). Furthermore, population genetic structure often varies across planktonic taxa, and appears to be linked to the particular ecological requirements of the organism. In combination, these characteristics should facilitate adaptive evolution to distinct oceanographic habitats in the plankton. We conclude that marine zooplankton may be capable of rapid evolutionary as well as ecological responses to changing ocean conditions, and discuss the implications of this view. We further suggest two priority areas for future research to test our hypothesis of high evolutionary potential in open ocean zooplankton, which will require (1) assessing how pervasive selection is in driving population divergence and (2) rigorously quantifying the spatial and temporal scales of population differentiation in the open ocean. Recent attention has focused on the ecological responses of open ocean zooplankton to current global change, including range shifts and changing phenology. Here, we argue that marine zooplankton also are well poised for evolutionary responses to global change. PMID:24567838

Turbulence Scaling Comparisons in the Ocean Surface Boundary Layer

NASA Astrophysics Data System (ADS)

Esters, L.; Breivik, Ø.; Landwehr, S.; ten Doeschate, A.; Sutherland, G.; Christensen, K. H.; Bidlot, J.-R.; Ward, B.

2018-03-01

Direct observations of the dissipation rate of turbulent kinetic energy, ɛ, under open ocean conditions are limited. Consequently, our understanding of what chiefly controls dissipation in the open ocean, and its functional form with depth, is poorly constrained. In this study, we report direct open ocean measurements of ɛ from the Air-Sea Interaction Profiler (ASIP) collected during five different cruises in the Atlantic Ocean. We then combine these data with ocean-atmosphere flux measurements and wave information in order to evaluate existing turbulence scaling theories under a diverse set of open ocean conditions. Our results do not support the presence of a "breaking" or a "transition layer," which has been previously suggested. Instead, ɛ decays as |z|-1.29 over the depth interval, which was previously defined as "transition layer," and as |z|-1.15 over the mixing layer. This depth dependency does not significantly vary between nonbreaking or breaking wave conditions. A scaling relationship based on the friction velocity, the wave age, and the significant wave height describes the observations best for daytime conditions. For conditions during which convection is important, it is necessary to take buoyancy forcing into account.

Analysis of Low-Biomass Microbial Communities in the Deep Biosphere.

PubMed

Morono, Y; Inagaki, F

2016-01-01

Over the past few decades, the subseafloor biosphere has been explored by scientific ocean drilling to depths of about 2.5km below the seafloor. Although organic-rich anaerobic sedimentary habitats in the ocean margins harbor large numbers of microbial cells, microbial populations in ultraoligotrophic aerobic sedimentary habitats in the open ocean gyres are several orders of magnitude less abundant. Despite advances in cultivation-independent molecular ecological techniques, exploring the low-biomass environment remains technologically challenging, especially in the deep subseafloor biosphere. Reviewing the historical background of deep-biosphere analytical methods, the importance of obtaining clean samples and tracing contamination, as well as methods for detecting microbial life, technological aspects of molecular microbiology, and detecting subseafloor metabolic activity will be discussed. Copyright © 2016 Elsevier Inc. All rights reserved.

Shelf and open-ocean calcareous phytoplankton assemblages across the Paleocene-Eocene thermal maximum: Implications for global productivity gradients

USGS Publications Warehouse

Gibbs, S.J.; Bralower, T.J.; Bown, Paul R.; Zachos, J.C.; Bybell, L.M.

2006-01-01

Abrupt global warming and profound perturbation of the carbon cycle during the Paleocene-Eocene Thermal Maximum (PETM, ca. 55 Ma) have been linked to a massive release of carbon into the ocean-atmosphere system. Increased phytoplankton productivity has been invoked to cause subsequent CO2 drawdown, cooling, and environmental recovery. However, interpretations of geochemical and biotic data differ on when and where this increased productivity occurred. Here we present high-resolution nannofossil assemblage data from a shelf section (the U.S. Geological Survey [USGS] drill hole at Wilson Lake, New Jersey) and an open-ocean location (Ocean Drilling Program [ODP] Site 1209, paleoequatorial Pacific). These data combined with published biotic records indicate a transient steepening of shelf-offshelf trophic gradients across the PETM onset and peak, with a decrease in open-ocean productivity coeval with increased nutrient availability in shelf areas. Productivity levels recovered in the open ocean during the later stages of the event, which, coupled with intensified continental weathering rates, may have played an important role in carbon sequestration and CO2 drawdown. ?? 2006 Geological Society of America.

Oceanic dispersion of Fukushima-derived Cs-137 in the coastal, offshore, and open oceans simulated by multiple oceanic general circulation models

NASA Astrophysics Data System (ADS)

Kawamura, H.; Furuno, A.; Kobayashi, T.; In, T.; Nakayama, T.; Ishikawa, Y.; Miyazawa, Y.; Usui, N.

2017-12-01

To understand the concentration and amount of Fukushima-derived Cs-137 in the ocean, this study simulates the oceanic dispersion of Cs-137 by an oceanic dispersion model SEA-GEARN-FDM developed at Japan Atomic Energy Agency (JAEA) and multiple oceanic general circulation models. The Cs-137 deposition amounts at the sea surface were used as the source term in oceanic dispersion simulations, which were estimated by atmospheric dispersion simulations with a Worldwide version of System for Prediction of Environmental Emergency Dose Information version II (WSPEEDI-II) developed at JAEA. The direct release from the Fukushima Daiichi Nuclear Power Plant into the ocean based on in situ Cs-137 measurements was used as the other source term in oceanic dispersion simulations. The simulated air Cs-137 concentrations qualitatively replicated those measured around the North Pacific. The accumulated Cs-137 ground deposition amount in the eastern Japanese Islands was consistent with that estimated by aircraft measurements. The oceanic dispersion simulations relatively well reproduced the measured Cs-137 concentrations in the coastal and offshore oceans during the first few months after the Fukushima disaster, and in the open ocean during the first year post-disaster. It was suggested that Cs-137 dispersed along the coast in the north-south direction during the first few months post-disaster, and were subsequently dispersed offshore by the Kuroshio Current and Kuroshio Extension. Mesoscale eddies accompanied by the Kuroshio Current and Kuroshio Extension played an important role in dilution of Cs-137. The Cs-137 amounts were quantified in the coastal, offshore, and open oceans during the first year post-disaster. It was demonstrated that Cs-137 actively dispersed from the coastal and offshore oceans to the open ocean, and from the surface layer to the deeper layer in the North Pacific.

Ocean time-series near Bermuda: Hydrostation S and the US JGOFS Bermuda Atlantic time-series study

NASA Technical Reports Server (NTRS)

Michaels, Anthony F.; Knap, Anthony H.

1992-01-01

Bermuda is the site of two ocean time-series programs. At Hydrostation S, the ongoing biweekly profiles of temperature, salinity and oxygen now span 37 years. This is one of the longest open-ocean time-series data sets and provides a view of decadal scale variability in ocean processes. In 1988, the U.S. JGOFS Bermuda Atlantic Time-series Study began a wide range of measurements at a frequency of 14-18 cruises each year to understand temporal variability in ocean biogeochemistry. On each cruise, the data range from chemical analyses of discrete water samples to data from electronic packages of hydrographic and optics sensors. In addition, a range of biological and geochemical rate measurements are conducted that integrate over time-periods of minutes to days. This sampling strategy yields a reasonable resolution of the major seasonal patterns and of decadal scale variability. The Sargasso Sea also has a variety of episodic production events on scales of days to weeks and these are only poorly resolved. In addition, there is a substantial amount of mesoscale variability in this region and some of the perceived temporal patterns are caused by the intersection of the biweekly sampling with the natural spatial variability. In the Bermuda time-series programs, we have added a series of additional cruises to begin to assess these other sources of variation and their impacts on the interpretation of the main time-series record. However, the adequate resolution of higher frequency temporal patterns will probably require the introduction of new sampling strategies and some emerging technologies such as biogeochemical moorings and autonomous underwater vehicles.

On the role of mesoscale eddies for the biological productivity and biogeochemistry in the eastern tropical Pacific Ocean off Peru

NASA Astrophysics Data System (ADS)

Stramma, L.; Bange, H. W.; Czeschel, R.; Lorenzo, A.; Frank, M.

2013-11-01

Mesoscale eddies seem to play an important role for both the hydrography and biogeochemistry of the eastern tropical Pacific Ocean (ETSP) off Peru. However, detailed surveys of these eddies are not available, which has so far hampered an in depth understanding of their implications for nutrient distribution and biological productivity. In this study, three eddies along a section at 16°45´ S have been surveyed intensively during R/V Meteor cruise M90 in November 2012. A coastal mode water eddy, an open ocean mode water eddy and an open ocean cyclonic eddy have been identified and sampled in order to determine both their hydrographic properties and their influence on the biogeochemical setting of the ETSP. In the thermocline the temperature of the coastal anticyclonic eddy was up to 2 °C warmer, 0.2 more saline and the swirl velocity was up to 35 cm s-1. The observed temperature and salinity anomalies, as well as swirl velocities of both types of eddies were about twice as large as had been described for the mean eddies in the ETSP. The observed heat and salt anomalies (AHA, ASA) of the anticyclonic eddy near the shelf-break of 17.7 × 1018 J and 36.6 × 1010 kg are more than twice as large as the mean AHA and ASA for the ETSP. We found that the eddies contributed to the productivity by maintaining pronounced subsurface maxima of chlorophyll of up to 6 μg L-1. Based on a comparison of the coastal (young) mode water eddy and the open ocean (old) mode water eddy we suggest that the ageing of eddies when they detach from the shelf-break and move westward to the open ocean influences the eddies' properties: chlorophyll maxima are reduced to about half (2.5-3 μg L-1) and nutrients are subducted. However, different settings at the time of formation may also contribute to the observed differences between the young and old mode water eddies. The coastal mode water eddy was found to be a site of nitrogen (N) loss in the OMZ with a maximum ΔNO3- anomaly (i.e. N loss) of about -25 μmol L-1 in 250 m water depth, whereas, the open ocean mode water and cyclonic eddies were of minor and negligible importance for the N loss, respectively. Our results show that the important role of eddies for the distribution of nutrients, as well as biogeochemical processes in the ETSP (and other OMZ/upwelling regions) can only be fully deciphered and understood through dedicated high spatial and temporal resolution oceanographic/biogeochemical surveys.

Sensitivity of Calibration Gains to Ocean Color Processing in Coastal and Open Waters Using Ensembles Members for NPP-VIIRS

DTIC Science & Technology

2014-07-01

a different impact on spectral normalized water leaving radiances and the derived ocean color products (inherent optical properties, chlorophyll ). We...leaving radiances and the derived ocean color products (inherent optical properties, chlorophyll ). We evaluated the influence of gains from open and...34gain" on ocean color products. These products include the spectral Remote Sensing Reflectance (RRS), chlorophyll concentration, and Inherent Optical

An ICP-MS procedure to determine Cd, Co, Cu, Ni, Pb and Zn in oceanic waters using in-line flow-injection with solid-phase extraction for preconcentration.

PubMed

O'Sullivan, Jeanette E; Watson, Roslyn J; Butler, Edward C V

2013-10-15

An automated procedure including both in-line preconcentration and multi-element determination by an inductively coupled plasma mass spectrometer (ICP-MS) has been developed for the determination of Cd, Co, Cu, Ni, Pb and Zn in open-ocean samples. The method relies on flow injection of the sample through a minicolumn of chelating (iminodiacetate) sorbent to preconcentrate the trace metals, while simultaneously eliminating the major cations and anions of seawater. The effectiveness of this step is tested and reliability in results are secured with a rigorous process of quality assurance comprising 36 calibration and reference samples in a run for analysis of 24 oceanic seawaters in a 6-h program. The in-line configuration and procedures presented minimise analyst operations and exposure to contamination. Seawater samples are used for calibration providing a true matrix match. The continuous automated pH measurement registers that chelation occurs within a selected narrow pH range and monitors the consistency of the entire analytical sequence. The eluent (0.8M HNO3) is sufficiently strong to elute the six metals in 39 s at a flow rate of 2.0 mL/min, while being compatible for prolonged use with the mass spectrometer. Throughput is one sample of 7 mL every 6 min. Detection limits were Co 3.2 pM, Ni 23 pM, Cu 46 pM, Zn 71 pM, Cd 2.7 pM and Pb 1.5 pM with coefficients of variation ranging from 3.4% to 8.6% (n=14) and linearity of calibration established beyond the observed concentration range of each trace metal in ocean waters. Recoveries were Co 96.7%, Ni 102%, Cu 102%, Zn 98.1%, Cd 92.2% and Pb 97.6%. The method has been used to analyse ~800 samples from three voyages in the Southern Ocean and Tasman Sea. It has the potential to be extended to other trace elements in ocean waters. © 2013 Elsevier B.V. All rights reserved.

50 CFR 648.15 - Facilitation of enforcement.

Code of Federal Regulations, 2010 CFR

2010-10-01

... ocean quahog open access permitted vessels. Vessel owners or operators issued an open access surfclam or ocean quahog open access permit for fishing in the ITQ Program, as specified at § 648.70, are required... limited access permitted vessels. Beginning January 1, 2009, vessel owners or operators issued a limited...

Upper Ocean Evolution Across the Beaufort Sea Marginal Ice Zone

NASA Astrophysics Data System (ADS)

Lee, C.; Rainville, L.; Gobat, J. I.; Perry, M. J.; Freitag, L. E.; Webster, S.

2016-12-01

The observed reduction of Arctic summertime sea ice extent and expansion of the marginal ice zone (MIZ) have profound impacts on the balance of processes controlling sea ice evolution, including the introduction of several positive feedback mechanisms that may act to accelerate melting. Examples of such feedbacks include increased upper ocean warming though absorption of solar radiation, elevated internal wave energy and mixing that may entrain heat stored in subsurface watermasses (e.g., the relatively warm Pacific Summer and Atlantic waters), and elevated surface wave energy that acts to deform and fracture sea ice. Spatial and temporal variability in ice properties and open water fraction impact these processes. To investigate how upper ocean structure varies with changing ice cover, how the balance of processes shift as a function of ice fraction and distance from open water, and how these processes impact sea ice evolution, a network of autonomous platforms sampled the atmosphere-ice-ocean system in the Beaufort, beginning in spring, well before the start of melt, and ending with the autumn freeze-up. Four long-endurance autonomous Seagliders occupied sections that extended from open water, through the marginal ice zone, deep into the pack during summer 2014 in the Beaufort Sea. Gliders penetrated up to 200 km into the ice pack, under complete ice cover for up to 10 consecutive days. Sections reveal strong fronts where cold, ice-covered waters meet waters that have been exposed to solar warming, and O(10 km) scale eddies near the ice edge. In the pack, Pacific Summer Water and a deep chlorophyll maximum form distinct layers at roughly 60 m and 80 m, respectively, which become increasingly diffuse late in the season as they progress through the MIZ and into open water. Stratification just above the Pacific Summer Water rapidly weakens near the ice edge and temperature variance increases, likely due to mixing or energetic vertical exchange associated with strong lateral gradients at the MIZ. This presentation will discuss the evolution of the Arctic upper ocean over the summer to the start of freeze up and the relationship of its variability to sea ice extent and atmospheric forcing.

Role of the Indonesian Throughflow in controlling regional mean climate and rainfall variability

NASA Astrophysics Data System (ADS)

England, Matthew H.; Santoso, Agus; Phipps, Steven; Ummenhofer, Caroline

2017-04-01

The role of the Indonesian Throughflow (ITF) in controlling regional mean climate and rainfall is examined using a coupled ocean-atmosphere general circulation model. Experiments employing both a closed and open ITF are equilibrated to steady state and then 200 years of natural climatic variability is assessed within each model run, with a particular focus on the Indian Ocean region. Opening of the ITF results in a mean Pacific-to-Indian throughflow of 21 Sv (1 Sv = 106 m3 sec-1), which advects warm west Pacific waters into the east Indian Ocean. This warm signature is propagated westward by the mean ocean flow, however it never reaches the west Indian Ocean, as an ocean-atmosphere feedback in the tropics generates a weakened trade wind field that is reminiscent of the negative phase of the Indian Ocean Dipole (IOD). This is in marked contrast to the Indian Ocean response to an open ITF when examined in ocean-only model experiments; which sees a strengthening of both the Indian Ocean South Equatorial Current and the Agulhas Current. The coupled feedback in contrast leads to cooler conditions over the west Indian Ocean, and an anomalous zonal atmospheric pressure gradient that enhances the advection of warm moist air toward south Asia and Australia. This leaves the African continent significantly drier, and much of Australia and southern Asia significantly wetter, in response to the opening of the ITF. Given the substantial interannual variability that the ITF exhibits in the present-day climate system, and the restriction of the ITF gateway in past climate eras, this could have important implications for understanding past and present regional rainfall patterns around the Indian Ocean and over neighbouring land-masses.

Patterns in Stable Isotope Values of Nitrogen and Carbon in ...

EPA Pesticide Factsheets

Stable isotope measurements of nitrogen and carbon (15N, 13ddC) are often used to characterize estuarine, nearshore, and open ocean ecosystems. Reliable information about the spatial distribution of base-level stable isotope values, often represented by primary producers, is critical to interpreting values in these ecosystems. While base-level isotope data are generally readily available for estuaries, nearshore coastal waters, and the open ocean, the continental shelf is less studied. To address this, and as a first step toward developing a surrogate for base-level isotopic signature in this region, we collected surface and deep water samples from the United States’ eastern continental shelf in the Western Atlantic Ocean, from the Gulf of Maine to Cape Hatteras, periodically between 2000 and 2013. During the study, particulate matter 15dN values ranged from 0.8 to 17.4‰, and 13dC values from −26.4 to −15.6‰over the region. We used spatial autocorrelation analysis and random forest modeling to examine the spatial trends and potential environmental drivers of the stable isotope values. We observed general trends toward lower values for both nitrogen and carbon isotopes at the seaward edge of the shelf. Conversely, higher 15dN and 13dC values were observed on the landward edge of the shelf, in particular in the southern portion of the sampling area. Across all sites, the magnitude of the difference between the 15dN of subsurface and surface particulate m

How much riverine nutrients do shelf seas allow into the open ocean?

NASA Astrophysics Data System (ADS)

Sharples, J.; Fennel, K.; Jickells, T. D.

2016-02-01

Globally rivers deliver 35 Tg of dissolved N and 2 Tg of dissolved P into the coastal zone each year. Investigating the effects of this nutrient supply on the open ocean generally takes one of two approaches: either all or none of the nutrients are assumed to enter the open ocean. Here we use some general assumptions on the behaviour of river plumes on the shelf to arrive at an estimate of the proportions of dissolved N and P that are processed on the shelf, and thus the amount of riverine nutrient that enters the open ocean. Using the Global NEWS database of 6000 rivers we assume that discharges to the shelf are initially constrained within coastal buoyancy currents of width 2 internal Rossby radii. This width is compared to the local shelf width for each river. For plume widths greater than the shelf width riverine nutrients are assumed to be transported over the shelf edge within the plume. For plume widths less than the shelf width we assume that exchange with the open ocean is controlled by physical processes at the shelf break. For each river an estimate of the residence time of riverine water is made, based on the transport or exchange rate and the shelf volume. Empirical relationships between residence time and the proportion of supplied N and P that is retained on the shelf are then used to estimate the amount of dissolved N and P that escapes to the open ocean. The results suggest that 25% of dissolved N and 20% of dissolved P are processed in shelf seas, with the rest exported to the open ocean. There is a latitudinal pattern, with tropical rivers delivering more nutrients to the open ocean. This is partially a result of the high discharges of some tropical rivers, but a key issue is our assumption of the internal Rossby radius governing plume width. A range of values for transport rates within plumes and exchange rates across the shelf break are used to assess the sensitivity of these results, which appear to be robust.

Atmospheric Nitrogen Deposition to the Oceans: Observation- and Model-Based Estimates

NASA Astrophysics Data System (ADS)

Baker, Alex; Altieri, Katye; Okin, Greg; Dentener, Frank; Uematsu, Mitsuo; Kanakidou, Maria; Sarin, Manmohan; Duce, Robert; Galloway, Jim; Keene, Bill; Singh, Arvind; Zamora, Lauren; Lamarque, Jean-Francois; Hsu, Shih-Chieh

2014-05-01

The reactive nitrogen (Nr) burden of the atmosphere has been increased by a factor of 3-4 by anthropogenic activity since the industrial revolution. This has led to large increases in the deposition of nitrate and ammonium to the surface waters of the open ocean, particularly downwind of major human population centres, such as those in North America, Europe and Southeast Asia. In oligotrophic waters, this deposition has the potential to significantly impact marine productivity and the global carbon cycle. Global-scale understanding of N deposition to the oceans is reliant on our ability to produce effective models of reactive nitrogen emission, atmospheric chemistry, transport and deposition (including deposition to the land surface). The Atmospheric Chemistry and Climate Model Intercomparison Project (ACCMIP) recently completed a multi-model analysis of global N deposition, including comparisons to wet deposition observations from three regional networks in North America, Europe and Southeast Asia (Lamarque et al., Atmos. Chem. Phys., 13, 7977-8018, 2013). No similar datasets exist which would allow observation - model comparisons of wet deposition for the open oceans, because long-term wet deposition records are available for only a handful of remote island sites and rain collection over the open ocean itself is very difficult. In this work we attempt instead to use ~2600 observations of aerosol nitrate and ammonium concentrations, acquired chiefly from sampling aboard ships in the period 1995 - 2012, to assess the ACCMIP N deposition fields over the remote ocean. This database is non-uniformly distributed in time and space. We selected four ocean regions (the eastern North Atlantic, the South Atlantic, the northern Indian Ocean and northwest Pacific) where we considered the density and distribution of observational data is sufficient to provide effective comparison to the model ensemble. Two of these regions are adjacent to the land networks used in the ACCMIP comparison, while the others are far removed from land regions for which the model output has been rigorously compared to observational data. Here we will present calculated dry deposition fluxes of nitrate and ammonium from average observed concentrations in these regions, using deposition velocities of 0.9 cm/s and 0.1 cm/s respectively, and the results of a comparison of these fluxes to the ACCMIP model ensemble product. Uncertainties in the comparison and potential sources of bias between the observations and model will be discussed.

Life in the "plastisphere": microbial communities on plastic marine debris.

PubMed

Zettler, Erik R; Mincer, Tracy J; Amaral-Zettler, Linda A

2013-07-02

Plastics are the most abundant form of marine debris, with global production rising and documented impacts in some marine environments, but the influence of plastic on open ocean ecosystems is poorly understood, particularly for microbial communities. Plastic marine debris (PMD) collected at multiple locations in the North Atlantic was analyzed with scanning electron microscopy (SEM) and next-generation sequencing to characterize the attached microbial communities. We unveiled a diverse microbial community of heterotrophs, autotrophs, predators, and symbionts, a community we refer to as the "Plastisphere". Pits visualized in the PMD surface conformed to bacterial shapes suggesting active hydrolysis of the hydrocarbon polymer. Small-subunit rRNA gene surveys identified several hydrocarbon-degrading bacteria, supporting the possibility that microbes play a role in degrading PMD. Some Plastisphere members may be opportunistic pathogens (the authors, unpublished data) such as specific members of the genus Vibrio that dominated one of our plastic samples. Plastisphere communities are distinct from surrounding surface water, implying that plastic serves as a novel ecological habitat in the open ocean. Plastic has a longer half-life than most natural floating marine substrates, and a hydrophobic surface that promotes microbial colonization and biofilm formation, differing from autochthonous substrates in the upper layers of the ocean.

Carbon isotope evidence for a magmatic origin for Archaean gold-quartz vein ore deposits

NASA Technical Reports Server (NTRS)

Burrows, D. R.; Wood, P. C.; Spooner, E. T. C.

1986-01-01

Sediments from three sites in the Santa Barbara Basin were examined with a 160X power light microscope and TEM equipment to characterize the magnetostatic bacteria (MB) in the samples. Both the free magnetite and the crystals in the MB in the samples had lengths from 40-60 nm in length and increased in size from one end to the next. An intact magnetosome was also observed. Scanning the sediments with saturation isothermal remanent magnetization (SIRM) and altering field demagnetization techniques using a SQUID magnetometer yielded coercivity spectra which showed that the primary remanence carrier in the sediments was single domain magnetite. Although it is expected that the predominance of the bacterial magnetite component will decrease with depth in the open ocean basin, single-domain bacteria as old as 50 Myr have been observed in oceanic sediments.

Marine CCN Activation: A Battle Between Primary and Secondary Sources

NASA Astrophysics Data System (ADS)

Fossum, K. N.; Ovadnevaite, J.; Ceburnis, D.; Preissler, J.; O'Dowd, C. D. D.

2017-12-01

Low-altitude marine clouds are cooling components of the Earth's radiative budget, and the direct measurements of the properties of these cloud forming particles, called cloud condensation nuclei (CCN), helps modellers reconstruct aerosol-to-cloud droplet processes, improving climate predictions. In this study, CCN are directly measured (CCNC commercially available from Droplet Measurement Technologies, Inc.), resolving activation efficiency at varying supersaturated conditions. Previous studies show that sub-micron sea salt particulates activate competitively, reducing the cloud peak supersaturation and inhibiting the activation of sulphate particulates into cloud droplets, making chemical composition an important component in determining cloud droplet number concentration (CDNC). This effect and the sea salt numbers needed to induce it have not been previously studied long-term in the natural environment. As part of this work, data was analysed from a two month marine research ship campaign during the Antarctic Austral summer, in 2015. Ambient aerosol in the Scotia Sea region was sampled continuously, and through the use of multiple aerosol in-situ instruments, this study shows that CCN number in both the open ocean and ice-pack influenced air masses are largely proportionate to secondary aerosol. However, open ocean air masses show a significant primary aerosol influence which changes the aerosol characteristics. Higher sea salt mass concentrations in the open ocean lead to better CCN activation efficiencies. Coupled with high wind speeds and sea surface turbulence, open ocean air masses show a repression of the CDNC number compared with the theoretical values that should be expected with the sub-cloud aerosol number concentration. This is not seen in the ice-pack air masses. Work is ongoing, looking into a long-term North Atlantic marine aerosol data set, but it would appear that chemical composition plays a large role in aerosol to cloud droplet processes, and can initially restrict CDNC when sea salt is abundant and updraft velocities are relatively low.

Preparing to predict: The Second Autonomous Ocean Sampling Network (AOSN-II) experiment in the Monterey Bay

NASA Astrophysics Data System (ADS)

Ramp, S. R.; Davis, R. E.; Leonard, N. E.; Shulman, I.; Chao, Y.; Robinson, A. R.; Marsden, J.; Lermusiaux, P. F. J.; Fratantoni, D. M.; Paduan, J. D.; Chavez, F. P.; Bahr, F. L.; Liang, S.; Leslie, W.; Li, Z.

2009-02-01

The Autonomous Ocean Sampling Network Phase Two (AOSN-II) experiment was conducted in and offshore from the Monterey Bay on the central California coast during July 23-September 6, 2003. The objective of the experiment was to learn how to apply new tools, technologies, and analysis techniques to adaptively sample the coastal ocean in a manner demonstrably superior to traditional methodologies, and to use the information gathered to improve predictive skill for quantities of interest to end-users. The scientific goal was to study the upwelling/relaxation cycle near an open coastal bay in an eastern boundary current region, particularly as it developed and spread from a coastal headland. The suite of observational tools used included a low-flying aircraft, a fleet of underwater gliders, including several under adaptive autonomous control, and propeller-driven AUVs in addition to moorings, ships, and other more traditional hardware. The data were delivered in real time and assimilated into the Harvard Ocean Prediction System (HOPS), the Navy Coastal Ocean Model (NCOM), and the Jet Propulsion Laboratory implementation of the Regional Ocean Modeling System (JPL/ROMS). Two upwelling events and one relaxation event were sampled during the experiment. The upwelling in both cases began when a pool of cold water less than 13 °C appeared near Cape Año Nuevo and subsequently spread offshore and southward across the bay as the equatorward wind stress continued. The primary difference between the events was that the first event spread offshore and southward, while the second event spread only southward and not offshore. The difference is attributed to the position and strength of meanders and eddies of the California Current System offshore, which blocked or steered the cold upwelled water. The space and time scales of the mesoscale variability were much shorter than have been previously observed in deep-water eddies offshore. Additional process studies are needed to elucidate the dynamics of the flow.

Drake passage and central american seaway controls on the distribution of the oceanic carbon reservoir

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fyke, Jeremy G.; D'Orgeville, Marc; Weaver, Andrew J.

2015-05-01

A coupled carbon/climate model is used to explore the impact of Drake Passage opening and Central American Seaway closure on the distribution of carbon in the global oceans. We find that gateway evolution likely played an important role in setting the modern day distribution of oceanic dissolved inorganic carbon (DIC), which is currently characterized by relatively low concentrations in the Atlantic ocean, and high concentrations in the Southern, Indian, and Pacific oceans. In agreement with previous studies, we find a closed Drake Passage in the presence of an open Central American Seaway results in suppressed Atlantic meridional overturning and enhancedmore » southern hemispheric deep convection. Opening of the Drake Passage triggers Antarctic Circumpolar Current flow and a weak Atlantic meridional overturning circulation (AMOC). Subsequent Central American Seaway closure reinforces the AMOC while also stagnating equatorial Pacific subsurface waters. These gateway-derived oceanographic changes are reflected in large shifts to the global distribution of DIC. An initially closed Drake Passage results in high DIC concentrations in the Atlantic and Arctic oceans, and lower DIC concentrations in the Pacific/Indian/Southern oceans. Opening Drake Passage reverses this gradient by lowering mid-depth Atlantic and Arctic DIC concentrations and raising deep Pacific/Indian/Southern Ocean DIC concentrations. Central American Seaway closure further reinforces this trend through additional Atlantic mid-depth DIC decreases, as well as Pacific mid-depth DIC concentration increases, with the net effect being a transition to a modern distribution of oceanic DIC.« less

Antarctic glaciation caused ocean circulation changes at the Eocene-Oligocene transition

NASA Astrophysics Data System (ADS)

Goldner, A.; Herold, N.; Huber, M.

2014-07-01

Two main hypotheses compete to explain global cooling and the abrupt growth of the Antarctic ice sheet across the Eocene-Oligocene transition about 34 million years ago: thermal isolation of Antarctica due to southern ocean gateway opening, and declining atmospheric CO2 (refs 5, 6). Increases in ocean thermal stratification and circulation in proxies across the Eocene-Oligocene transition have been interpreted as a unique signature of gateway opening, but at present both mechanisms remain possible. Here, using a coupled ocean-atmosphere model, we show that the rise of Antarctic glaciation, rather than altered palaeogeography, is best able to explain the observed oceanographic changes. We find that growth of the Antarctic ice sheet caused enhanced northward transport of Antarctic intermediate water and invigorated the formation of Antarctic bottom water, fundamentally reorganizing ocean circulation. Conversely, gateway openings had much less impact on ocean thermal stratification and circulation. Our results support available evidence that CO2 drawdown--not gateway opening--caused Antarctic ice sheet growth, and further show that these feedbacks in turn altered ocean circulation. The precise timing and rate of glaciation, and thus its impacts on ocean circulation, reflect the balance between potentially positive feedbacks (increases in sea ice extent and enhanced primary productivity) and negative feedbacks (stronger southward heat transport and localized high-latitude warming). The Antarctic ice sheet had a complex, dynamic role in ocean circulation and heat fluxes during its initiation, and these processes are likely to operate in the future.

Antarctic glaciation caused ocean circulation changes at the Eocene-Oligocene transition.

PubMed

Goldner, A; Herold, N; Huber, M

2014-07-31

Two main hypotheses compete to explain global cooling and the abrupt growth of the Antarctic ice sheet across the Eocene-Oligocene transition about 34 million years ago: thermal isolation of Antarctica due to southern ocean gateway opening, and declining atmospheric CO2 (refs 5, 6). Increases in ocean thermal stratification and circulation in proxies across the Eocene-Oligocene transition have been interpreted as a unique signature of gateway opening, but at present both mechanisms remain possible. Here, using a coupled ocean-atmosphere model, we show that the rise of Antarctic glaciation, rather than altered palaeogeography, is best able to explain the observed oceanographic changes. We find that growth of the Antarctic ice sheet caused enhanced northward transport of Antarctic intermediate water and invigorated the formation of Antarctic bottom water, fundamentally reorganizing ocean circulation. Conversely, gateway openings had much less impact on ocean thermal stratification and circulation. Our results support available evidence that CO2 drawdown--not gateway opening--caused Antarctic ice sheet growth, and further show that these feedbacks in turn altered ocean circulation. The precise timing and rate of glaciation, and thus its impacts on ocean circulation, reflect the balance between potentially positive feedbacks (increases in sea ice extent and enhanced primary productivity) and negative feedbacks (stronger southward heat transport and localized high-latitude warming). The Antarctic ice sheet had a complex, dynamic role in ocean circulation and heat fluxes during its initiation, and these processes are likely to operate in the future.

Response of Halimeda to ocean acidification: Field and laboratory evidence

USGS Publications Warehouse

Robbins, L.L.; Knorr, P.O.; Hallock, P.

2009-01-01

Rising atmospheric pCO2 levels are changing ocean chemistry more dramatically now than in the last 20 million years. In fact, pHvalues of the open ocean have decreased by 0.1 since the 1800s and are predicted to decrease 0.1-0.4 globally in the next 90 years. Ocean acidification will affect fundamental geochemical and biological processes including calcification and carbonate sediment production. The west Florida shelf is a natural laboratory to examine the effects of ocean acidification on aragonite production by calcareous green algae. Scanning electron microscopy (SEM) of crystal morphology of calcifying organisms reveals ultrastructural details of calcification that occurred at different saturation states. Comparison of archived and recent specimens of calcareous green alga Halimeda spp. from the west Florida shelf, demonstrates crystal changes in shape and abundance over a 40+ year time span. Halimeda crystal data from apical sections indicate that increases in crystal concentration and decreases in crystal width occurred over the last 40+ years. Laboratory experiments using living specimens of Halimeda grown in environments with known pH values were used to constrain historical observations. Percentages of organic and inorganic carbon per sample weight of pooled species did not significantly change. However, individual species showed decreased inorganic carbon and increased organic carbon in more recent samples, although the sample sizes were limited. These results indicate that the effect of increased pCO 2 and decreased pH on calcification is reflected in the crystal morphology of this organism. More data are needed to confirm the observed changes in mass of crystal and organic carbon. ?? Author(s) 2009.

Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems

PubMed Central

Zinger, Lucie; Amaral-Zettler, Linda A.; Fuhrman, Jed A.; Horner-Devine, M. Claire; Huse, Susan M.; Welch, David B. Mark; Martiny, Jennifer B. H.; Sogin, Mitchell; Boetius, Antje; Ramette, Alban

2011-01-01

Background Marine microbial communities have been essential contributors to global biomass, nutrient cycling, and biodiversity since the early history of Earth, but so far their community distribution patterns remain unknown in most marine ecosystems. Methodology/Principal Findings The synthesis of 9.6 million bacterial V6-rRNA amplicons for 509 samples that span the global ocean's surface to the deep-sea floor shows that pelagic and benthic communities greatly differ, at all taxonomic levels, and share <10% bacterial types defined at 3% sequence similarity level. Surface and deep water, coastal and open ocean, and anoxic and oxic ecosystems host distinct communities that reflect productivity, land influences and other environmental constraints such as oxygen availability. The high variability of bacterial community composition specific to vent and coastal ecosystems reflects the heterogeneity and dynamic nature of these habitats. Both pelagic and benthic bacterial community distributions correlate with surface water productivity, reflecting the coupling between both realms by particle export. Also, differences in physical mixing may play a fundamental role in the distribution patterns of marine bacteria, as benthic communities showed a higher dissimilarity with increasing distance than pelagic communities. Conclusions/Significance This first synthesis of global bacterial distribution across different ecosystems of the World's oceans shows remarkable horizontal and vertical large-scale patterns in bacterial communities. This opens interesting perspectives for the definition of biogeographical biomes for bacteria of ocean waters and the seabed. PMID:21931760

78 FR 69395 - Meeting of the Ocean Research Advisory Panel

Federal Register 2010, 2011, 2012, 2013, 2014

2013-11-19

...: Department of the Navy, DoD. ACTION: Notice of Open Meeting. SUMMARY: The Ocean Research Advisory Panel will hold a regularly scheduled meeting. The meeting will be open to the public. Members of the public who..., Arlington, VA 22203- 1995, telephone 703-696-4532. SUPPLEMENTARY INFORMATION: This notice of open meeting is...

78 FR 57371 - Meeting of the Ocean Research Advisory Panel

Federal Register 2010, 2011, 2012, 2013, 2014

2013-09-18

...: Department of the Navy, DoD. ACTION: Notice of open meeting. SUMMARY: The Ocean Research Advisory Panel will hold a regularly scheduled meeting. The meeting will be open to the public. DATES: The meeting will be..., VA 22203- 1995, telephone 703-696-4532. SUPPLEMENTARY INFORMATION: This notice of open meeting is...

Horizontal variability of the marine boundary layer structure upwind of San Nicolas Island during FIRE, 1987

NASA Technical Reports Server (NTRS)

Jensen, Douglas R.

1990-01-01

During the months of June and July 1987, the Marine Stratocumulus Intensive Field Observation Experiment of First ISCCP Regional Experiment (FIRE) was conducted in the Southern California offshore area in the vicinity of San Nicolas Island (SNI). The Naval Ocean Systems Center (NOSC) airborne platform was utilized during FIRE to investigate the upwind low level horizontal variability of the marine boundary layer structure to determine the representativeness of SNI-based measurements to upwind open ocean conditions. The NOSC airborne meteorological platform made three flights during FIRE, two during clear sky conditions (19 and 23 July), and one during two stratus conditions (15 July). The boundary layer structure variations associated with the stratus clouds of 15 July 1987 are discussed. Profiles of air temperature (AT) and relative humidity (RH) taken 'at' and 'upwind' of SNI do show differences between the so-called open ocean conditions and those taken near the island. However, the observed difference cannot be uniquely identified to island effects, especially since the upwind fluctuations of AT and RH bound the SNI measurements. Total optical depths measures at SNI do not appear to be greatly affected by any surface based aerosol effects created by the island and could therefore realistically represent open ocean conditions. However, if one were to use the SNI aerosol measurements to predict ship to ship EO propagation conditions, significant errors could be introduced due to the increased number of surface aerosols observed near SNI which may not be, and were not, characteristic of open ocean conditions. Sea surface temperature measurements taken at the island will not, in general, represent those upwind open ocean conditions. Also, since CTT's varied appreciably along the upwind radials, measurements of CTT over the island may not be representative of actual open ocean CTT's.

Open-source algorithm for detecting sea ice surface features in high-resolution optical imagery

NASA Astrophysics Data System (ADS)

Wright, Nicholas C.; Polashenski, Chris M.

2018-04-01

Snow, ice, and melt ponds cover the surface of the Arctic Ocean in fractions that change throughout the seasons. These surfaces control albedo and exert tremendous influence over the energy balance in the Arctic. Increasingly available meter- to decimeter-scale resolution optical imagery captures the evolution of the ice and ocean surface state visually, but methods for quantifying coverage of key surface types from raw imagery are not yet well established. Here we present an open-source system designed to provide a standardized, automated, and reproducible technique for processing optical imagery of sea ice. The method classifies surface coverage into three main categories: snow and bare ice, melt ponds and submerged ice, and open water. The method is demonstrated on imagery from four sensor platforms and on imagery spanning from spring thaw to fall freeze-up. Tests show the classification accuracy of this method typically exceeds 96 %. To facilitate scientific use, we evaluate the minimum observation area required for reporting a representative sample of surface coverage. We provide an open-source distribution of this algorithm and associated training datasets and suggest the community consider this a step towards standardizing optical sea ice imagery processing. We hope to encourage future collaborative efforts to improve the code base and to analyze large datasets of optical sea ice imagery.

Biogeochemical linkage between atmosphere and ocean in the eastern equatorial Pacific Ocean: Results from the EqPOS research cruise

NASA Astrophysics Data System (ADS)

Furutani, H.; Inai, Y.; Aoki, S.; Honda, H.; Omori, Y.; Tanimoto, H.; Iwata, T.; Ueda, S.; Miura, K.; Uematsu, M.

2012-12-01

Eastern equatorial Pacific Ocean is a unique oceanic region from several biogeochemical points of view. It is a remote open ocean with relatively high marine biological activity, which would result in limited influence of human activity but enhanced effect of marine natural processes on atmospheric composition. It is also characterized as high nutrient low chlorophyll (HNLC) ocean, in which availability of trace metals such as iron and zinc limits marine primary production and thus atmospheric deposition of these trace elements to the ocean surface is expected to play an important role in regulating marine primary production and defining unique microbial community. High sea surface temperature in the region generates strong vertical air convection which efficiently brings tropospheric atmospheric composition into stratosphere. In this unique eastern equatorial Pacific Ocean, EqPOS (Equatorial Pacific Ocean and Stratospheric/Tropospheric Atmospheric Study) research cruise was organized as a part of SOLAS Japan activity to understand biogeochemical ocean-atmospheric interaction in the region. Coordinated atmospheric, oceanic, and marine biological observations including sampling/characterization of thin air-sea interfacial layer (sea surface microlayer: SML) and launching large stratospheric air sampling balloons were carried out on-board R/V Hakuho Maru starting from 29 January for 39 days. Biogeochemically important trace/long-lived gases such as CO2, dimethyl sulfide (DMS), and some volatile organic carbons (VOCs) both in the atmosphere and seawater were continuously monitored and their air-sea fluxes were also observed using gradient and eddy-covariance techniques. Atmospheric gas measurement of CO2, CH4, N2O, SF6, CO, H2, Ar and isotopic composition of selected gases were further extended to stratospheric air by balloon-born sampling in addition to a vertical profiling of O3, CO2, and H2O with sounding sondes. Physical and chemical properties of marine atmospheric aerosols such as size distribution, total and cloud condensation nuclei concentrations, particle morphology, bulk and single particle chemical composition were also continuously determined to find out potential link between biogenic VOCs emitted from the ocean and aerosol composition. Biological and biogeochemical characterizations of marine microorganisms, suspended particulate matter, dissolved nutrients in seawater and SML were also conducted. In the presentation, brief overview of the research activities during the EqPOS cruise and biogeochemical linkage atmosphere and ocean via atmospheric and oceanic gaseous and particulate matter from ocean surface to stratosphere observed during the cruise and unique importance of SML would be presented.

Use of radon-222 to evaluate the influence of groundwater discharge on fecal indicator bacteria concentrations in the near-shore ocean, Malibu, California

NASA Astrophysics Data System (ADS)

Izbicki, J. A.; Burton, C.; Swarzenski, P. W.

2011-12-01

To protect beach-goers from waterborne disease, California requires water-quality monitoring for fecal indicator bacteria (FIB) at beaches having more than 50,000 visits annually. The source(s) of FIB in ocean beaches in excess of marine recreational water standards is often not known, or may be incorrectly identified. Onsite wastewater treatment systems (OWTS) used to treat residential and commercial sewage have been implicated by regulatory agencies as a possible source of FIB to recreational ocean beaches, near Malibu, California. For this to occur, treated wastewater must first move through groundwater prior to discharge at the ocean. Groundwater discharge to the ocean near Malibu Lagoon (the estuary of Malibu Creek) is complicated by seasonally changing water levels in the lagoon. The lagoon is isolated from the ocean by a sand berm that develops across the mouth of the lagoon during the dry season. Higher water levels in the lagoon during the dry season, and lower water-levels during the wet season, cause seasonal changes in the direction of groundwater flow and the magnitude of discharge from the adjacent small (3,400 hectare), alluvial aquifer. Radon-222, an indicator of groundwater discharge, was measured in Malibu Lagoon, in the near-shore ocean adjacent to the lagoon, and in the near-shore ocean adjacent to unsewered residential development to determine the timing and magnitude of groundwater discharge. During the dry season, when the berm of the lagoon was closed and the lagoon was isolated from the ocean, radon-222 concentrations in the near-shore ocean during low tide increased as water discharged from the lagoon through the berm. Enterococcus concentrations in the near-shore ocean increased to almost 600 Most Probable Number (MPN) per 100 milliliter at this time. Radon-222 concentrations also increased at low tide as groundwater discharged to the ocean from the adjacent alluvial aquifer underlying the unsewered residential development, but there was no corresponding increase in FIB concentrations. In contrast, during the wet season when the berm of the lagoon was open, radon-222 data show groundwater discharge from the alluvial aquifer was primarily into the lagoon at low tide. The water in the lagoon was subsequently discharged directly to the near-shore ocean as a result of tidally driven circulation through the open berm. Radon-222 data showed little, if any, groundwater discharge to the near-shore ocean adjacent to the unsewered residential development at this time, implying that FIB in the near-shore ocean would not be derived from OWTS in the unsewered residential areas. The absence of FIB in recreational beaches adjacent to unsewered residential development at low tide suggests that mechanisms other than groundwater discharge may be responsible for high FIB concentrations in this area. For example, microbial communities sampled in the near-shore ocean were genetically similar to those present in kelp and different from OWTS samples-suggesting that high FIB concentrations, especially at high tide, may result from wave action on the beach releasing FIB entrained in kelp that was derived from birds and other non-human sources.

Quantifying the Role of Atmospheric Forcing in Ice Edge Retreat and Advance Including Wind-Wave Coupling

DTIC Science & Technology

2015-09-30

Quantifying the Role of Atmospheric Forcing in Ice Edge Retreat and Advance Including Wind- Wave Coupling Peter S. Guest (NPS Technical Contact) Naval...surface fluxes and ocean waves in coupled models in the Beaufort and Chukchi Seas. 2. Understand the physics of heat and mass transfer from the ocean...to the atmosphere. 3. Improve forecasting of waves on the open ocean and in the marginal ice zone. 2 OBJECTIVES 1. Quantifying the open-ocean

Enhanced open ocean storage of CO2 from shelf sea pumping.

PubMed

Thomas, Helmuth; Bozec, Yann; Elkalay, Khalid; de Baar, Hein J W

2004-05-14

Seasonal field observations show that the North Sea, a Northern European shelf sea, is highly efficient in pumping carbon dioxide from the atmosphere to the North Atlantic Ocean. The bottom topography-controlled stratification separates production and respiration processes in the North Sea, causing a carbon dioxide increase in the subsurface layer that is ultimately exported to the North Atlantic Ocean. Globally extrapolated, the net uptake of carbon dioxide by coastal and marginal seas is about 20% of the world ocean's uptake of anthropogenic carbon dioxide, thus enhancing substantially the open ocean carbon dioxide storage.

Combined Atmospheric and Ocean Profiling from an Airborne High Spectral Resolution Lidar

NASA Astrophysics Data System (ADS)

Hair, Johnathan; Hostetler, Chris; Hu, Yongxiang; Behrenfeld, Michael; Butler, Carolyn; Harper, David; Hare, Rich; Berkoff, Timothy; Cook, Antony; Collins, James; Stockley, Nicole; Twardowski, Michael; Cetinić, Ivona; Ferrare, Richard; Mack, Terry

2016-06-01

First of its kind combined atmospheric and ocean profile data were collected by the recently upgraded NASA Langley Research Center's (LaRC) High Spectral Resolution Lidar (HSRL-1) during the 17 July - 7 August 2014 Ship-Aircraft Bio-Optical Research Experiment (SABOR). This mission sampled over a region that covered the Gulf of Maine, open-ocean near Bermuda, and coastal waters from Virginia to Rhode Island. The HSRL-1 and the Research Scanning Polarimeter from NASA Goddard Institute for Space Studies collected data onboard the NASA LaRC King Air aircraft and flight operations were closely coordinated with the Research Vessel Endeavor that made in situ ocean optical measurements. The lidar measurements provided profiles of atmospheric backscatter and particulate depolarization at 532nm, 1064nm, and extinction (532nm) from approximately 9km altitude. In addition, for the first time HSRL seawater backscatter, depolarization, and diffuse attenuation data at 532nm were collected and compared to both the ship measurements and the Moderate Resolution Imaging Spectrometer (NASA MODIS-Aqua) satellite ocean retrievals.

Sensitivity of open-water ice growth and ice concentration evolution in a coupled atmosphere-ocean-sea ice model

NASA Astrophysics Data System (ADS)

Shi, Xiaoxu; Lohmann, Gerrit

2017-09-01

A coupled atmosphere-ocean-sea ice model is applied to investigate to what degree the area-thickness distribution of new ice formed in open water affects the ice and ocean properties. Two sensitivity experiments are performed which modify the horizontal-to-vertical aspect ratio of open-water ice growth. The resulting changes in the Arctic sea-ice concentration strongly affect the surface albedo, the ocean heat release to the atmosphere, and the sea-ice production. The changes are further amplified through a positive feedback mechanism among the Arctic sea ice, the Atlantic Meridional Overturning Circulation (AMOC), and the surface air temperature in the Arctic, as the Fram Strait sea ice import influences the freshwater budget in the North Atlantic Ocean. Anomalies in sea-ice transport lead to changes in sea surface properties of the North Atlantic and the strength of AMOC. For the Southern Ocean, the most pronounced change is a warming along the Antarctic Circumpolar Current (ACC), owing to the interhemispheric bipolar seasaw linked to AMOC weakening. Another insight of this study lies on the improvement of our climate model. The ocean component FESOM is a newly developed ocean-sea ice model with an unstructured mesh and multi-resolution. We find that the subpolar sea-ice boundary in the Northern Hemisphere can be improved by tuning the process of open-water ice growth, which strongly influences the sea ice concentration in the marginal ice zone, the North Atlantic circulation, salinity and Arctic sea ice volume. Since the distribution of new ice on open water relies on many uncertain parameters and the knowledge of the detailed processes is currently too crude, it is a challenge to implement the processes realistically into models. Based on our sensitivity experiments, we conclude a pronounced uncertainty related to open-water sea ice growth which could significantly affect the climate system sensitivity.

Timoides agassizii Bigelow, 1904, little-known hydromedusa (Cnidaria), appears briefly in large numbers off Oman, March 2011, with additional notes about species of the genus Timoides.

PubMed

Purushothaman, Jasmine; Kharusi, Lubna Al; Mills, Claudia E; Ghielani, Hamed; Marzouki, Mohammad Al

2013-12-11

A bloom of the hydromedusan jellyfish, Timoides agassizii, occurred in February 2011 off the coast of Sohar, Al Batinah, Sultanate of Oman, in the Gulf of Oman. This species was first observed in 1902 in great numbers off Haddummati Atoll in the Maldive Islands in the Indian Ocean and has rarely been seen since. The species appeared briefly in large numbers off Oman in 2011 and subsequent observation of our 2009 samples of zooplankton from Sohar revealed that it was also present in low numbers (two collected) in one sample in 2009; these are the first records in the Indian Ocean north of the Maldives. Medusae collected off Oman were almost identical to those recorded previously from the Maldive Islands, Papua New Guinea, the Marshall Islands, Guam, the South China Sea, and Okinawa. T. agassizii is a species that likely lives for several months. It was present in our plankton samples together with large numbers of the oceanic siphonophore Physalia physalis only during a single month's samples, suggesting that the temporary bloom off Oman was likely due to the arrival of mature, open ocean medusae into nearshore waters. We see no evidence that T. agassizii has established a new population along Oman, since if so, it would likely have been present in more than one sample period. We are unable to deduce further details of the life cycle of this species from blooms of many mature individuals nearshore, about a century apart. Examination of a single damaged T. agassizii medusa from Guam, calls into question the existence of its congener, T. latistyla, known only from a single specimen.

First order sea-level cycles and supercontinent break up

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heller, P.L.; Angevine, C.L.

1985-01-01

The authors have developed a model that successfully predicts the approximate magnitude and timing of long term sea-level change without relying on short term increases in global spreading rates. The model involves the following key assumptions. (1) Ocean basins have two types of area/age distributions; Pacific ocean basins are rimmed by subduction zones and have triangular distributions; and Atlantic ocean basins which open at constant rates, have no subduction, and so have rectangular distributions. (2) The total area of the global ocean is constant so that the Pacific basin must close as the Atlantic opens. These assumptions approximate modern globalmore » ocean basin conditions. The model begins with supercontinent break up. As the Atlantic begins to open, the mean age of the global ocean decreases, the mean depth of the sea floor shallows, and sea level, therefore, rises. Once the Atlantic occupies more than 8 to 10% of the global ocean area, the mean age and depth of the ocean floor increases resulting in a sea-level fall. The model can be applied to the mid-Cretaceous sea-level high stand which followed break up of Pangea by 80 to 100 Ma. Based on average Atlantic opening rates, sea level rises to a peak of 44 m at 80 Ma after opening began and then falls by 84 m to the present. Thus the model is capable of explaining approximately half of the total magnitude of the post-mid-Cretaceous eustatic fall without invoking short-term changes in global spreading rates. In addition, the model predicts the observed time lag between supercontinent break up and sea-level high stand for both Mesozoic as well as early Paleozoic time.« less

Optical sedimentation recorder

DOEpatents

Bishop, James K.B.

2014-05-06

A robotic optical sedimentation recorder is described for the recordation of carbon flux in the oceans wherein both POC and PIC particles are captured at the open end of a submersible sampling platform, the captured particles allowed to drift down onto a collection plate where they can be imaged over time. The particles are imaged using three separate light sources, activated in sequence, one source being a back light, a second source being a side light to provide dark field illumination, and a third source comprising a cross polarized light source to illuminate birefringent particles. The recorder in one embodiment is attached to a buoyancy unit which is capable upon command for bringing the sedimentation recorder to a programmed depth below the ocean surface during recordation mode, and on command returning the unit to the ocean surface for transmission of recorded data and receipt of new instructions. The combined unit is provided with its own power source and is designed to operate autonomously in the ocean for extended periods of time.

Arctic Deep Water Ferromanganese-Oxide Deposits Reflect the Unique Characteristics of the Arctic Ocean

NASA Astrophysics Data System (ADS)

Hein, James R.; Konstantinova, Natalia; Mikesell, Mariah; Mizell, Kira; Fitzsimmons, Jessica N.; Lam, Phoebe J.; Jensen, Laramie T.; Xiang, Yang; Gartman, Amy; Cherkashov, Georgy; Hutchinson, Deborah R.; Till, Claire P.

2017-11-01

Little is known about marine mineral deposits in the Arctic Ocean, an ocean dominated by continental shelf and basins semi-closed to deep-water circulation. Here, we present data for ferromanganese crusts and nodules collected from the Amerasia Arctic Ocean in 2008, 2009, and 2012 (HLY0805, HLY0905, and HLY1202). We determined mineral and chemical compositions of the crusts and nodules and the onset of their formation. Water column samples from the GEOTRACES program were analyzed for dissolved and particulate scandium concentrations, an element uniquely enriched in these deposits. The Arctic crusts and nodules are characterized by unique mineral and chemical compositions with atypically high growth rates, detrital contents, Fe/Mn ratios, and low Si/Al ratios, compared to deposits found elsewhere. High detritus reflects erosion of submarine outcrops and North America and Siberia cratons, transport by rivers and glaciers to the sea, and distribution by sea ice, brines, and currents. Uniquely high Fe/Mn ratios are attributed to expansive continental shelves, where diagenetic cycling releases Fe to bottom waters, and density flows transport shelf bottom water to the open Arctic Ocean. Low Mn contents reflect the lack of a mid-water oxygen minimum zone that would act as a reservoir for dissolved Mn. The potential host phases and sources for elements with uniquely high contents are discussed with an emphasis on scandium. Scandium sorption onto Fe oxyhydroxides and Sc-rich detritus account for atypically high scandium contents. The opening of Fram Strait in the Miocene and ventilation of the deep basins initiated Fe-Mn crust growth ˜15 Myr ago.

Arctic deep-water ferromanganese-oxide deposits reflect the unique characteristics of the Arctic Ocean

USGS Publications Warehouse

Hein, James; Konstantinova, Natalia; Mikesell, Mariah; Mizell, Kira; Fitzsimmons, Jessica N.; Lam, Phoebe; Jensen, Laramie T.; Xiang, Yang; Gartman, Amy; Cherkashov, Georgy; Hutchinson, Deborah; Till, Claire P.

2017-01-01

Little is known about marine mineral deposits in the Arctic Ocean, an ocean dominated by continental shelf and basins semi-closed to deep-water circulation. Here, we present data for ferromanganese crusts and nodules collected from the Amerasia Arctic Ocean in 2008, 2009, and 2012 (HLY0805, HLY0905, HLY1202). We determined mineral and chemical compositions of the crusts and nodules and the onset of their formation. Water column samples from the GEOTRACES program were analyzed for dissolved and particulate scandium concentrations, an element uniquely enriched in these deposits.The Arctic crusts and nodules are characterized by unique mineral and chemical compositions with atypically high growth rates, detrital contents, Fe/Mn ratios, and low Si/Al ratios, compared to deposits found elsewhere. High detritus reflects erosion of submarine outcrops and North America and Siberia cratons, transport by rivers and glaciers to the sea, and distribution by sea ice, brines, and currents. Uniquely high Fe/Mn ratios are attributed to expansive continental shelves, where diagenetic cycling releases Fe to bottom waters, and density flows transport shelf bottom water to the open Arctic Ocean. Low Mn contents reflect the lack of a mid-water oxygen minimum zone that would act as a reservoir for dissolved Mn. The potential host phases and sources for elements with uniquely high contents are discussed with an emphasis on scandium. Scandium sorption onto Fe oxyhydroxides and Sc-rich detritus account for atypically high scandium contents. The opening of Fram Strait in the Miocene and ventilation of the deep basins initiated Fe-Mn crust growth ∼15 Myr ago.

Evidence from Ocean Drilling Program Leg 149 mafic igneous rocks for oceanic crust in the Iberia Abyssal Plain ocean-continent transition zone

NASA Astrophysics Data System (ADS)

Seifert, Karl E.; Chang, Cheng-Wen; Brunotte, Dale A.

1997-04-01

Leg 149 of the Ocean Drilling Program explored the ocean-continent transition (OCT) on the Iberia Abyssal Plain and its role in the opening of the Atlantic Ocean approximately 130 Ma. Mafic igneous rocks recovered from Holes 899B and 900A have Mid-Ocean Ridge Basalt (MORB) trace element and isotopic characteristics indicating that a spreading center was active during the opening of the Iberia Abyssal Plain OCT. The Hole 899B weathered basalt and diabase clasts have transitional to enriched MORB rare earth element characteristics, and the Hole 900A metamorphosed gabbros have MORB initial epsilon Nd values between +6 and +11. During the opening event the Iberia Abyssal Plain OCT is envisioned to have resembled the central and northern parts of the present Red Sea with localized spreading centers and magma chambers producing localized patches of MORB mafic rocks. The lack of a normal ocean floor magnetic anomaly pattern in the Iberia Abyssal Plain means that a continuous spreading center similar to that observed in the present southern Red Sea was not formed before spreading ceased in the Iberia Abyssal Plain OCT and jumped to the present Mid-Atlantic Ridge.

Large mesopelagic fishes biomass and trophic efficiency in the open ocean.

PubMed

Irigoien, Xabier; Klevjer, T A; Røstad, A; Martinez, U; Boyra, G; Acuña, J L; Bode, A; Echevarria, F; Gonzalez-Gordillo, J I; Hernandez-Leon, S; Agusti, S; Aksnes, D L; Duarte, C M; Kaartvedt, S

2014-01-01

With a current estimate of ~1,000 million tons, mesopelagic fishes likely dominate the world total fishes biomass. However, recent acoustic observations show that mesopelagic fishes biomass could be significantly larger than the current estimate. Here we combine modelling and a sensitivity analysis of the acoustic observations from the Malaspina 2010 Circumnavigation Expedition to show that the previous estimate needs to be revised to at least one order of magnitude higher. We show that there is a close relationship between the open ocean fishes biomass and primary production, and that the energy transfer efficiency from phytoplankton to mesopelagic fishes in the open ocean is higher than what is typically assumed. Our results indicate that the role of mesopelagic fishes in oceanic ecosystems and global ocean biogeochemical cycles needs to be revised as they may be respiring ~10% of the primary production in deep waters.

Large mesopelagic fishes biomass and trophic efficiency in the open ocean

PubMed Central

Irigoien, Xabier; Klevjer, T. A.; Røstad, A.; Martinez, U.; Boyra, G.; Acuña, J. L.; Bode, A.; Echevarria, F.; Gonzalez-Gordillo, J. I.; Hernandez-Leon, S.; Agusti, S.; Aksnes, D. L.; Duarte, C. M.; Kaartvedt, S.

2014-01-01

With a current estimate of ~1,000 million tons, mesopelagic fishes likely dominate the world total fishes biomass. However, recent acoustic observations show that mesopelagic fishes biomass could be significantly larger than the current estimate. Here we combine modelling and a sensitivity analysis of the acoustic observations from the Malaspina 2010 Circumnavigation Expedition to show that the previous estimate needs to be revised to at least one order of magnitude higher. We show that there is a close relationship between the open ocean fishes biomass and primary production, and that the energy transfer efficiency from phytoplankton to mesopelagic fishes in the open ocean is higher than what is typically assumed. Our results indicate that the role of mesopelagic fishes in oceanic ecosystems and global ocean biogeochemical cycles needs to be revised as they may be respiring ~10% of the primary production in deep waters. PMID:24509953

Oceanic crustal velocities from laboratory and logging measurements of Integrated Ocean Drilling Program Hole 1256D

NASA Astrophysics Data System (ADS)

Gilbert, Lisa A.; Salisbury, Matthew H.

2011-09-01

Drilling and logging of Integrated Ocean Drilling Program (IODP) Hole 1256D have provided a unique opportunity for systematically studying a fundamental problem in marine geophysics: What influences the seismic structure of oceanic crust, porosity or composition? Compressional wave velocities (Vp) logged in open hole or from regional refraction measurements integrate both the host rock and cracks in the crust. To determine the influence of cracks on Vp at several scales, we first need an accurate ground truth in the form of laboratory Vp on crack-free, or nearly crack-free samples. We measured Vp on 46 water-saturated samples at in situ pressures to determine the baseline velocities of the host rock. These new results match or exceed Vp logs throughout most of the hole, especially in the lower dikes and gabbros, where porosities are low. In contrast, samples measured at sea under ambient laboratory conditions, had consistently lower Vp than the Vp logs, even after correction to in situ pressures. Crack-free Vp calculated from simple models of logging and laboratory porosity data for different lithologies and facies suggest that crustal velocities in the lavas and upper dikes are controlled by porosity. In particular, the models demonstrate significant large-scale porosity in the lavas, especially in the sections identified as fractured flows and breccias. However, crustal velocities in the lower dikes and gabbros are increasingly controlled by petrology as the layer 2-3 boundary is approached.

The Tara Oceans voyage reveals global diversity and distribution patterns of marine planktonic ciliates

PubMed Central

Gimmler, Anna; Korn, Ralf; de Vargas, Colomban; Audic, Stéphane; Stoeck, Thorsten

2016-01-01

Illumina reads of the SSU-rDNA-V9 region obtained from the circumglobal Tara Oceans expedition allow the investigation of protistan plankton diversity patterns on a global scale. We analyzed 6,137,350 V9-amplicons from ocean surface waters and the deep chlorophyll maximum, which were taxonomically assigned to the phylum Ciliophora. For open ocean samples global planktonic ciliate diversity is relatively low (ca. 1,300 observed and predicted ciliate OTUs). We found that 17% of all detected ciliate OTUs occurred in all oceanic regions under study. On average, local ciliate OTU richness represented 27% of the global ciliate OTU richness, indicating that a large proportion of ciliates is widely distributed. Yet, more than half of these OTUs shared <90% sequence similarity with reference sequences of described ciliates. While alpha-diversity measures (richness and exp(Shannon H)) are hardly affected by contemporary environmental conditions, species (OTU) turnover and community similarity (β-diversity) across taxonomic groups showed strong correlation to environmental parameters. Logistic regression models predicted significant correlations between the occurrence of specific ciliate genera and individual nutrients, the oceanic carbonate system and temperature. Planktonic ciliates displayed distinct vertical distributions relative to chlorophyll a. In contrast, the Tara Oceans dataset did not reveal any evidence that latitude is structuring ciliate communities. PMID:27633177

At-sea detection of marine debris: overview of technologies, processes, issues, and options.

PubMed

Mace, Thomas H

2012-01-01

At-sea detection of marine debris presents a difficult problem, as the debris items are often relatively small and partially submerged. However, they may accumulate in water parcel boundaries or eddy lines. The application of models, satellite radar and multispectral data, and airborne remote sensing (particularly radar) to focus the search on eddies and convergence zones in the open ocean appear to be a productive avenue of investigation. A multistage modeling and remote sensing approach is proposed for the identification of areas of the open ocean where debris items are more likely to congregate. A path forward may best be achieved through the refinement of the Ghost Net procedures with the addition of a final search stage using airborne radar from an UAS simulator aircraft to detect zones of potential accumulation for direct search. Sampling strategies, direct versus indirect measurements, remote sensing resolution, sensor/platform considerations, and future state are addressed. Copyright © 2011 Elsevier Ltd. All rights reserved.

A method for the extraction and quantitation of phycoerythrin from algae

NASA Technical Reports Server (NTRS)

Stewart, D. E.

1982-01-01

A summary of a new technique for the extraction and quantitation of phycoerythrin (PHE) from algal samples is described. Results of analysis of four extracts representing three PHE types from algae including cryptomonad and cyanophyte types are presented. The method of extraction and an equation for quantitation are given. A graph showing the relationship of concentration and fluorescence units that may be used with samples fluorescing around 575-580 nm (probably dominated by cryptophytes in estuarine waters) and 560 nm (dominated by cyanophytes characteristics of the open ocean) is provided.

228Ra and 226Ra Profiles from the Northern South China Sea

NASA Astrophysics Data System (ADS)

Lin, H.; Chung, Y.; Lin, C.

2005-05-01

We previously reported the distributions of 228Ra and 226Ra in the northern South China Sea (SCS) which showed that both nuclides in surface waters were much higher than those in the open oceans because the SCS was enclosed mostly by landmasses which are known as sources of these nuclides. Large temporal and spectial variations were also observed probably due to the monsoons and intrusion of the Kuroshio Current. During a recent cruise conducted in the northern SCS in February, 2004, three vertical 228Ra profiles were measured by gamma spectrometry on the Ra isotopes which were concentrated first by the MnO2-impregnated acrylic fiber and then acid-washed as sample solution for counting. The two deep water 228Ra profiles are remarkably similar, showing high values in the surface layer and fairly uniform at about 10 to 13 dpm/100L below 200m depth but with a clear increase toward the bottom due to input from the underlying sediments. The shallow water profile on the shelf shows higher 228Ra values due to both vertical and horizontal mixing of the shelf water with additional source from the shore zone. Additional 228Ra profiles measured on samples from earlier cruises show that the deep water values may differ significantly (up to 5 dpm/100L) at the same location in different seasons or cruises. The associated 226Ra profiles are also variable but quite comparable to those in the northwest Pacific in deep water. 226Ra activities in the shallow water (less than 1000m depth) are higher in the SCS than in the open oceans. The 228Ra/226Ra activity ratios vary mostly from about 0.3 to 0.5 in the deep water. These values are much higher than those in the open oceans which are generally less than 0.1.

Highlighting patterns of fungal diversity and composition shaped by ocean currents using the East China Sea as a model.

PubMed

Li, Wei; Wang, Mengmeng; Pan, Haoqin; Burgaud, Gaëtan; Liang, Shengkang; Guo, Jiajia; Luo, Tian; Li, Zhaoxia; Zhang, Shoumei; Cai, Lei

2018-01-01

How ocean currents shape fungal transport, dispersal and more broadly fungal biogeography remains poorly understood. The East China Sea (ECS) is a complex and dynamic habitat with different water masses blending microbial communities. The internal transcribed spacer 2 region of fungal rDNA was analysed in water and sediment samples directly collected from the coastal (CWM), Kuroshio (KSWM), Taiwan warm (TWM) and the shelf mixed water mass (MWM), coupled with hydrographic properties measurements, to determine how ocean currents impact the fungal community composition. Almost 9k fungal operational taxonomic units (OTUs) spanning six phyla, 25 known classes, 102 orders and 694 genera were obtained. The typical terrestrial and freshwater fungal genus, Byssochlamys, was dominant in the CWM, while increasing abundance of a specific OTU affiliated with Aspergillus was revealed from coastal to open ocean water masses (TWM and KSWM). Compared with water samples, sediment harboured an increased diversity with distinct fungal communities. The proximity of the Yangtze and Qiantang estuaries homogenizes the surface water and sediment communities. A significant influence of ocean currents on community structure was found, which is believed to reduce proportionally the variation explained by environmental parameters at the scale of the total water masses. Dissolved oxygen and depth were identified as the major parameters structuring the fungal community. Our results indicate that passive fungal dispersal driven by ocean currents and river run-off, in conjunction with the distinct hydrographic conditions of individual water masses, shapes the fungal community composition and distribution pattern in the ECS. © 2017 John Wiley & Sons Ltd.

Oceanotron, Scalable Server for Marine Observations

NASA Astrophysics Data System (ADS)

Loubrieu, T.; Bregent, S.; Blower, J. D.; Griffiths, G.

2013-12-01

Ifremer, French marine institute, is deeply involved in data management for different ocean in-situ observation programs (ARGO, OceanSites, GOSUD, ...) or other European programs aiming at networking ocean in-situ observation data repositories (myOcean, seaDataNet, Emodnet). To capitalize the effort for implementing advance data dissemination services (visualization, download with subsetting) for these programs and generally speaking water-column observations repositories, Ifremer decided to develop the oceanotron server (2010). Knowing the diversity of data repository formats (RDBMS, netCDF, ODV, ...) and the temperamental nature of the standard interoperability interface profiles (OGC/WMS, OGC/WFS, OGC/SOS, OpeNDAP, ...), the server is designed to manage plugins: - StorageUnits : which enable to read specific data repository formats (netCDF/OceanSites, RDBMS schema, ODV binary format). - FrontDesks : which get external requests and send results for interoperable protocols (OGC/WMS, OGC/SOS, OpenDAP). In between a third type of plugin may be inserted: - TransformationUnits : which enable ocean business related transformation of the features (for example conversion of vertical coordinates from pressure in dB to meters under sea surface). The server is released under open-source license so that partners can develop their own plugins. Within MyOcean project, University of Reading has plugged a WMS implementation as an oceanotron frontdesk. The modules are connected together by sharing the same information model for marine observations (or sampling features: vertical profiles, point series and trajectories), dataset metadata and queries. The shared information model is based on OGC/Observation & Measurement and Unidata/Common Data Model initiatives. The model is implemented in java (http://www.ifremer.fr/isi/oceanotron/javadoc/). This inner-interoperability level enables to capitalize ocean business expertise in software development without being indentured to specific data formats or protocols. Oceanotron is deployed at seven European data centres for marine in-situ observations within myOcean. While additional extensions are still being developed, to promote new collaborative initiatives, a work is now done on continuous and distributed integration (jenkins, maven), shared reference documentation (on alfresco) and code and release dissemination (sourceforge, github).

Potassium Isotopes as a New Tracer of Seafloor Hydrothermal Alteration: The Bay of Islands Ophiolite

NASA Astrophysics Data System (ADS)

Parendo, C. A.; Jacobsen, S. B.; Wang, K.

2016-12-01

Hydrothermal circulation at and around oceanic spreading ridges results in elemental exchange between seawater and oceanic crust, with profound implications for both the ionic composition of seawater and the elemental composition of various solid-Earth reservoirs over geological time. Potassium is among the elements known to be mobile during hydrothermal alteration. Here we investigate the isotopic character of this K exchange by obtaining high-precision 41K/39K data for 6 samples from the Bay of Islands Ophiolite, Newfoundland, Canada—a piece of ca. 485 Ma oceanic crust that was affected by seafloor hydrothermal alteration prior to being obducted. Our 41K/39K analyses are generated using an Isoprobe-P MC-ICPMS equipped with a hexapole collision and reaction cell, which essentially eliminates interferences from the K-isotope mass spectrum. The analyses have an external reproducibility of about 0.07‰ (2SD). We find that the 41K/39K ratios of the ophiolite rocks span a range of approximately 0.70‰ and covary with previously determined 87Sr/86Sr ratios. The stratigraphically deepest, least-altered sample (an olivine gabbro) has a 41K/39K ratio within error of that typically observed in common igneous rocks. The stratigraphically higher, more-altered samples (which include hornblende gabbro, plagiogranite, diabase, and basalt) have 41K/39K ratios that are markedly heavier. This variability in 41K/39K ratios is interpreted to reflect variable addition of seawater K to the rocks. A simple open-system water-rock interaction calculation shows that the covariation between 41K/39K and 87Sr/86Sr can be plausibly explained as the result of hydrothermal alteration. The simplest scenario assumes that the 41K/39K ratio of seawater at the time of interest was similar to its present-day value, in which case the calculation suggests that isotopically heavy seawater K is added to oceanic crust with little fractionation—i.e., an effective fractionation factor near 0.0‰. The findings of this study indicate that 41K/39K ratios will be useful in future efforts to constrain the hydrothermal flux of the marine K cycle, to identify ancient fragments of oceanic crust, and to track oceanic crust as it is subducted, incorporated into the mantle, and sampled by arc, ocean island, and mid-ocean ridge volcanism.

Abundance of genes involved in mercury methylation in oceanic environments

NASA Astrophysics Data System (ADS)

Palumbo, A. V.; Podar, M.; Gilmour, C. C.; Brandt, C. C.; Brown, S. D.; Crable, B. R.; Weighill, D.; Jacobson, D. A.; Somenahally, A. C.; Elias, D. A.

2016-02-01

The distribution and diversity of genes involved in mercury methylation in oceanic environments is of interest in determining the source of mercury in ocean environments and may have predictive value for mercury methylation rates. The highly conserved hgcAB genes involved in mercury methylation provide an avenue for evaluating the genetic potential for mercury methylation. The genes are sporadically present in a few diverse groups of bacteria and Archaea including Deltaproteobacteria, Firmicutes and Archaea and of over 7000 sequenced species they are only present in about 100 genomes. Examination of sequence data from methylators and non-methylators indicates that these genes are associated with other genes involved in metal transformations and transport. We examined hgcAB presence in over 3500 microbial metagenomes (from all environments) and found the hgcAB genes were present in anaerobic oceanic environments but not in aerobic layers of the open ocean. The genes were common in sediments from marine, coastal and estuarine sources as well as polluted environments. The genes were rare, found in 7 of 138 samples, in metagenomes from the pelagic water column including profiles though the oxygen minimum zone. Other oxic and sub-oxic coastal waters also demonstrated a lack of hgcAB genes including the OMZ in the Eastern North Pacific Ocean. There were some unique hgcA like unique sequences found in metagenomes from depth in the Pacific and Southern Atlantic Ocean. Coastal "dead zone" waters may be important sources of MeHg as the hgcAB genes were abundant in the anoxic waters of a stratified fjord. The genes were absent in microbiomes from vertebrates but were in invertebrate microbiomes However, oceanic species were underrepresented in these samples. Climate change could provide an additional flux of MeHg to the oceans as we found the most abundant representation of hgcAB genes in arctic permafrost. Thus warming could increase flux of methyl mercury to arctic waters.

Seismic structure of western Mediterranean back-arc basins and rifted margins - constraints from the Algerian-Balearic and Tyrrhenian Basins

NASA Astrophysics Data System (ADS)

Grevemeyer, Ingo; Ranero, Cesar; Sallares, Valenti; Prada, Manel; Booth-Rea, Guillermo; Gallart, Josep; Zitellini, Nevio

2017-04-01

The Western Mediterranean Sea is a natural laboratory to study the processes of continental extension, rifting and back-arc spreading in a convergent setting caused by rollback of fragmented subducting oceanic slabs during the latest phase of consumption of the Tethys ocean, leading to rapid extension in areas characterized by a constant convergence of the African and European Plates since Cretaceous time. Opening of the Algerian-Balearic Basin was governed by a southward and westward retreating slab 21 to 18 Myr and 18 to15 Myr ago, respectively. Opening of the Tyrrhenian Basin was controlled by the retreating Calabrian slab 6 to 2 Myr ago. Yet, little is known about the structure of the rifted margins, back-arc extension and spreading. Here we present results from three onshore/offshore seismic refraction and wide-angle lines and two offshore lines sampling passive continental margins of southeastern Spain and to the south of the Balearic promontory and the structure of the Tyrrhenian Basin to the north of Sicily. Seismic refraction and wide-angle data were acquired in the Algerian-Balearc Basin during a cruise of the German research vessel Meteor in September of 2006 and in the Tyrrhenian Sea aboard the Spanish research vessel Sarmiento de Gamboa in July of 2015. All profiles sampled both continental crust of the margins surrounding the basins and extend roughly 100 km into the Algerian-Balearic and the Tyrrhenian Basins, yielding constraints on the nature of the crust covering the seafloor in the basins and adjacent margins. Crust in the Algerian-Balearic basin is roughly 5-6 km thick and the seismic velocity structure mimics normal oceanic crust with the exception that lower crustal velocity is <6.8 km/s, clearly slower than lower crust sampled in the Pacific Basin. The seismic Moho in the Algerian-Balearic Basin occurs at 11 km below sea level, reaching >24 km under SE Spain and the Balearic Islands, displaying typical features and structure of continental crust. Offshore Sicily, continental crust reaches 22 km. However, the Tyrrhenian Basin indicates a lithosphere with velocities increasing continuously from 3 km/s to 7.5 km/s, mimicking features attributed to un-roofed and hence serpentinized mantle. Therefore, even though the opening of both basins was controlled by slab rollback, the resulting structures of the basins indicate striking differences. It is interesting to note that the continent/ocean transition zone of the margins did not show any evidence for high velocity lower crustal rocks, in contrast to what has been sampled in Western Pacific arc/back-arc systems.

A review of ocean color remote sensing methods and statistical techniques for the detection, mapping and analysis of phytoplankton blooms in coastal and open oceans

NASA Astrophysics Data System (ADS)

Blondeau-Patissier, David; Gower, James F. R.; Dekker, Arnold G.; Phinn, Stuart R.; Brando, Vittorio E.

2014-04-01

The need for more effective environmental monitoring of the open and coastal ocean has recently led to notable advances in satellite ocean color technology and algorithm research. Satellite ocean color sensors' data are widely used for the detection, mapping and monitoring of phytoplankton blooms because earth observation provides a synoptic view of the ocean, both spatially and temporally. Algal blooms are indicators of marine ecosystem health; thus, their monitoring is a key component of effective management of coastal and oceanic resources. Since the late 1970s, a wide variety of operational ocean color satellite sensors and algorithms have been developed. The comprehensive review presented in this article captures the details of the progress and discusses the advantages and limitations of the algorithms used with the multi-spectral ocean color sensors CZCS, SeaWiFS, MODIS and MERIS. Present challenges include overcoming the severe limitation of these algorithms in coastal waters and refining detection limits in various oceanic and coastal environments. To understand the spatio-temporal patterns of algal blooms and their triggering factors, it is essential to consider the possible effects of environmental parameters, such as water temperature, turbidity, solar radiation and bathymetry. Hence, this review will also discuss the use of statistical techniques and additional datasets derived from ecosystem models or other satellite sensors to characterize further the factors triggering or limiting the development of algal blooms in coastal and open ocean waters.

Lost but can't be neglected: Huge quantities of small microplastics hide in the South China Sea.

PubMed

Cai, Minggang; He, Haixia; Liu, Mengyang; Li, Siwei; Tang, Guowen; Wang, Weimin; Huang, Peng; Wei, Ge; Lin, Yan; Chen, Bin; Hu, Jiahui; Cen, Zhengnan

2018-08-15

Large quantities of microplastics with small particle sizes were found in the South China Sea (SCS). The abundances of microplastics in seawater were 0.045±0.093and 2569±1770particles/m 3 according to the bongo net and pumping sampling methods, respectively. Smaller-size fractions (size<0.3mm) contributed 92% of the number of microplastics to the total load. Continental slope is the largest reservoir of microplastics with an inventory of 295tons. 21 polymer types were found in the samples using the micro Fourier Transform Infrared Spectroscopy (FTIR), among which alkyds (22.5%) and polycaprolactone (PCL) (20.9%) accounted for almost half of the total polymer content. Lighter plastics would not only concentrate upon the coastal area, being more likely to drift further into open seas with ocean currents. The distribution characteristics showed that it was mainly controlled by terrestrial input of the Pearl River. This study, as the first report from SCS on microplastics in water for its distribution and influence factors, provided impetus for further research on the transportation fate and the behavior of this emerging pollutant from coastal zone to the open oceans. Copyright © 2018 Elsevier B.V. All rights reserved.

Publishing Linked Open Data for Physical Samples - Lessons Learned

NASA Astrophysics Data System (ADS)

Ji, P.; Arko, R. A.; Lehnert, K.; Bristol, S.

2016-12-01

Most data and information about physical samples and associated sampling features currently reside in relational databases. Integrating common concepts from various databases has motivated us to publish Linked Open Data for collections of physical samples, using Semantic Web technologies including the Resource Description Framework (RDF), RDF Query Language (SPARQL), and Web Ontology Language (OWL). The goal of our work is threefold: To evaluate and select ontologies in different granularities for common concepts; to establish best practices and develop a generic methodology for publishing physical sample data stored in relational database as Linked Open Data; and to reuse standard community vocabularies from the International Commission on Stratigraphy (ICS), Global Volcanism Program (GVP), General Bathymetric Chart of the Oceans (GEBCO), and others. Our work leverages developments in the EarthCube GeoLink project and the Interdisciplinary Earth Data Alliance (IEDA) facility for modeling and extracting physical sample data stored in relational databases. Reusing ontologies developed by GeoLink and IEDA has facilitated discovery and integration of data and information across multiple collections including the USGS National Geochemical Database (NGDB), System for Earth Sample Registration (SESAR), and Index to Marine & Lacustrine Geological Samples (IMLGS). We have evaluated, tested, and deployed Linked Open Data tools including Morph, Virtuoso Server, LodView, LodLive, and YASGUI for converting, storing, representing, and querying data in a knowledge base (RDF triplestore). Using persistent identifiers such as Open Researcher & Contributor IDs (ORCIDs) and International Geo Sample Numbers (IGSNs) at the record level makes it possible for other repositories to link related resources such as persons, datasets, documents, expeditions, awards, etc. to samples, features, and collections. This work is supported by the EarthCube "GeoLink" project (NSF# ICER14-40221 and others) and the "USGS-IEDA Partnership to Support a Data Lifecycle Framework and Tools" project (USGS# G13AC00381).

Wind energy input into the upper ocean over a lengthening open water season

NASA Astrophysics Data System (ADS)

Mahoney, A. R.; Rolph, R.; Walsh, J. E.

2017-12-01

Wind energy input into the ocean has important consequences for upper ocean mixing, heat and gas exchange, and air-sea momentum transfer. In the Arctic, the open water season is increasing and extending further into the fall storm season, allowing for more wind energy input into the water column. The rate at which the delayed freeze-up timing extends into fall storm season is an important metric to evaluate because the expanding overlap between the open water period and storm season could contribute a significant amount of wind energy into the water column in a relatively short period of time. We have shown that time-integrated wind speeds over open water in the Chukchi Sea and southern Beaufort region have increased since 1979 through 2014. An integrated wind energy input value is calculated for each year in this domain over the open water season, as well as for periods over partial concentrations of ice cover. Spatial variation of this integrated wind energy is shown along the Alaskan coastline, which can have implications for different rates of coastal erosion. Spatial correlation between average wind speed over open water and open water season length from 1979-2014 show positive values in the southern Beaufort, but negative values in the northern Chukchi. This suggests possible differences in the role of the ocean on open water season length depending on region. We speculate that the warm Pacific water outflow plays a more dominant role in extending the open water season length in the northern Chukchi when compared to the southern Beaufort, and might help explain why we can show there is a relatively longer open water season length there. The negative and positive correlations in wind speeds over open water and open water season length might also be explained by oceanic changes tending to operate on longer timescales than the atmosphere. Seasonal timescales of wind events such as regional differences in overlap of the extended open water season due to regional differences in delayed freeze-up into the fall storm season are also investigated. In addition, we have shown that the increased integrated wind energy input over open water values are more a result of the increased open water season length, rather than the increase in wind speeds over open water.

The Removal of Terrestrial Dissolved Organic Matter in Coastal Regions by Photo-Flocculation Process

NASA Astrophysics Data System (ADS)

Abdulla, H. A.; Mopper, K.

2015-12-01

The fate of terrestrial dissolved organic matter (tDOM) as it moves to open ocean was the focus of many studies for the last three decades, most of these studies were focused on three major removal processes: 1) Photochemical mineralization of tDOM (conversion to inorganic forms); 2) Microbial oxidation; and 3) Mixing-induced flocculation. Based on recent estimations, the combination of theses removal processes accounts for ~20-35% of the loss of tDOM in estuaries and coastal regions; which is far from closing the gap between the riverine fluxes of tDOM and the amount of tDOM detected in the open ocean. In a preliminary experiment to determine if photo-flocculation indeed occurs at pH values and ionic strengths found in estuaries. A 0.1-μm filtered riverine was diluted 1:1 with artificial seawater and MilliQ water to yield final salinities ranging from 0 - 15; the pH of the saline samples was ranged from 6-8. Photo-flocculation was observed for all salinities, with particles organic carbon (POC) values ranged from 3.2 to 8.5% of the original DOC. Interestingly, the composition of the Photo-flocculated particles in the saline samples was markedly different from the zero salinity samples as shown in their FT-IR spectra. The photo-flocculated particles that formed in the saline samples appear to be rich in carbohydrate and amide functionalities (protein-like), while containing insignificant deprotonated carboxylate. While the flocs that formed in freshwater (salinity zero) are richer in deprotonated carboxyl groups, and relatively depleted in carbohydrate functionality.

Carbonate dissolution in the South Atlantic Ocean: evidence from ultrastructure breakdown in Globigerina bulloides

NASA Astrophysics Data System (ADS)

Dittert, Nicolas; Henrich, Rüdiger

2000-04-01

Ultrastructure dissolution susceptibility of the planktic foraminifer Globigerina bulloides, carbonate ion content of the water column, calcium carbonate content of the sediment surface, and carbonate/carbon weight percentage ratio derived from sediment surface samples were investigated in order to reconstruct the position of the calcite saturation horizon, the sedimentary calcite lysocline, and the calcium carbonate compensation depth (CCD) in the modern South Atlantic Ocean. Carbonate ion data from the water column refer to the GEOSECS locations 48, 103, and 109 and calcium carbonate data come from 19 GeoB sediment surface samples of 4 transects into the Brazil, the Guinea, and the Cape Basins. We present a new (paleo-) oceanographic tool, namely the Globigerina bulloides dissolution index (BDX). Further, we give evidence (a) for progressive G. bulloides ultrastructural breakdown with increasing carbonate dissolution even above the lysocline; (b) for a sharp BDX increase at the sedimentary lysocline; and (c) for the total absence of this species at the CCD. BDX puts us in the position to distinguish the upper open ocean and the upwelling influenced continental margin above from the deep ocean below the sedimentary lysocline. Carbonate ion data from water column samples, calcite weight percentage data from surface sediment samples, and carbonate/carbon weight percentage ratio appear to be good proxies to confirm BDX. As shown by BDX both the calcite saturation horizon (in the water column) and the sedimentary lysocline (at the sediment-water interface) mark the boundary between the carbonate ion undersaturated and highly corrosive Antarctic Bottom Water and the carbonate ion saturated North Atlantic Deep Water (NADW) of the modern South Atlantic.

Reviving legacy clay mineralogy data and metadata through the IEDA-CCNY Data Internship Program

NASA Astrophysics Data System (ADS)

Palumbo, R. V.; Randel, C.; Ismail, A.; Block, K. A.; Cai, Y.; Carter, M.; Hemming, S. R.; Lehnert, K.

2016-12-01

Reconstruction of past climate and ocean circulation using ocean sediment cores relies on the use of multiple climate proxies measured on well-studied cores. Preserving all the information collected on a sediment core is crucial for the success of future studies using these unique and important samples. Clay mineralogy is a powerful tool to study weathering processes and sedimentary provenance. In his pioneering dissertation, Pierre Biscaye (1964, Yale University) established the X-Ray Diffraction (XRD) method for quantitative clay mineralogy analyses in ocean sediments and presented data for 500 core-top samples throughout the Atlantic Ocean and its neighboring seas. Unfortunately, the data only exists in analog format, which has discouraged scientists from reusing the data, apart from replication of the published maps. Archiving and preserving this dataset and making it publicly available in a digital format, linked with the metadata from the core repository will allow the scientific community to use these data to generate new findings. Under the supervision of Sidney Hemming and members of the Interdisciplinary Earth Data Alliance (IEDA) team, IEDA-CCNY interns digitized the data and metadata from Biscaye's dissertation and linked them with additional sample metadata using IGSN (International Geo-Sample Number). After compilation and proper documentation of the dataset, it was published in the EarthChem Library where the dataset will be openly accessible, and citable with a persistent DOI (Digital Object Identifier). During this internship, the students read peer-reviewed articles, interacted with active scientists in the field and acquired knowledge about XRD methods and the data generated, as well as its applications. They also learned about existing and emerging best practices in data publication and preservation. Data rescue projects are a fun and interactive way for students to become engaged in the field.

Lagrangian analysis of multi-satellite data in support of open ocean Marine Protected Area design

NASA Astrophysics Data System (ADS)

Della Penna, Alice; Koubbi, Philippe; Cotté, Cedric; Bon, Cécile; Bost, Charles-André; d'Ovidio, Francesco

2017-06-01

Compared to ecosystem conservation in territorial seas, protecting the open ocean has peculiar geopolitical, economic and scientific challenges. One of the major obstacle is defining the boundary of an open ocean Marine Protected Area (MPA). In contrast to coastal ecosystems, which are mostly constrained by topographic structures fixed in time, the life of marine organisms in the open ocean is entrained by fluid dynamical structures like eddies and fronts, whose lifetime occurs on ecologically-relevant timescales. The position of these highly dynamical structures can vary interannually by hundreds of km, and so too will regions identified as ecologically relevant such as the foraging areas of marine predators. Thus, the expected foraging locations suggested from tracking data cannot be directly extrapolated beyond the year in which the data were collected. Here we explore the potential of Lagrangian methods applied to multisatellite data as a support tool for a MPA proposal by focusing on the Crozet archipelago oceanic area (Indian Sector of the Southern Ocean). By combining remote sensing with biologging information from a key marine top predator (Eudyptes chrysolophus, or Macaroni penguin) of the Southern Ocean foodweb, we identify a highly dynamic branch of the Subantarctic front as a foraging hotspot. By tracking this feature in historical satellite data (1993-2012) we are able to extrapolate the position of this foraging ground beyond the years in which tracking data are available and study its spatial variability.

Fractional solubility of aerosol iron: Synthesis of a global-scale data set

NASA Astrophysics Data System (ADS)

Sholkovitz, Edward R.; Sedwick, Peter N.; Church, Thomas M.; Baker, Alexander R.; Powell, Claire F.

2012-07-01

Aerosol deposition provides a major input of the essential micronutrient iron to the open ocean. A critical parameter with respect to biological availability is the proportion of aerosol iron that enters the oceanic dissolved iron pool - the so-called fractional solubility of aerosol iron (%FeS). Here we present a global-scale compilation of total aerosol iron loading (FeT) and estimated %FeS values for ∼1100 samples collected over the open ocean, the coastal ocean, and some continental sites, including a new data set from the Atlantic Ocean. Despite the wide variety of methods that have been used to define 'soluble' aerosol iron, our global-scale compilation reveals a remarkably consistent trend in the fractional solubility of aerosol iron as a function of total aerosol iron loading, with the great bulk of the data defining an hyperbolic trend. The hyperbolic trends that we observe for both global- and regional-scale data are adequately described by a simple two-component mixing model, whereby the fractional solubility of iron in the bulk aerosol reflects the conservative mixing of 'lithogenic' mineral dust (high FeT and low %FeS) and non-lithogenic 'combustion' aerosols (low FeT and high %FeS). An increasing body of empirical and model-based evidence points to anthropogenic fuel combustion as the major source of these non-lithogenic 'combustion' aerosols, implying that human emissions are a major determinant of the fractional solubility of iron in marine aerosols. The robust global-scale relationship between %FeS and FeT provides a simple heuristic method for estimating aerosol iron solubility at the regional to global scale.

Fixed point Open Ocean Observatory network (FixO3): Multidisciplinary observations from the air-sea interface to the deep seafloor

NASA Astrophysics Data System (ADS)

Lampitt, Richard; Cristini, Luisa

2014-05-01

The Fixed point Open Ocean Observatory network (FixO3) seeks to integrate the 23 European open ocean fixed point observatories and to improve access to these key installations for the broader community. These will provide multidisciplinary observations in all parts of the oceans from the air-sea interface to the deep seafloor. Coordinated by the National Oceanography Centre, UK, FixO3 builds on the significant advances achieved through the previous Europe-funded FP7 programmes EuroSITES, ESONET and CARBOOCEAN. Started in September 2013 with a budget of 7 Million Euros over 4 years the project has 29 partners drawn from academia, research institutions and SME's. In addition 12 international experts from a wide range of disciplines comprise an Advisory Board. On behalf of the FixO3 Consortium, we present the programme that will be achieved through the activities of 12 Work Packages: 1. Coordination activities to integrate and harmonise the current procedures and processes. Strong links will be fostered with the wider community across academia, industry, policy and the general public through outreach, knowledge exchange and training. 2. Support actions to offer a) free access to observatory infrastructures to those who do not have such access, and b) free and open data services and products. 3. Joint research activities to innovate and enhance the current capability for multidisciplinary in situ ocean observation. Support actions include Transnational Access (TNA) to FixO3 infrastructure, meaning that European organizations can apply to free-of-charge access to the observatories for research and testing in two international calls during the project lifetime. The first call for TNA opens in summer 2014. More information can be found on FixO3 website (www.fixo3.eu/). Open ocean observation is currently a high priority for European marine and maritime activities. FixO3 will provide important data on environmental products and services to address the Marine Strategy Framework Directive and in support of the European Integrated Maritime Policy. The FixO3 network will provide free and open access to in situ fixed point data of the highest quality. It will provide a strong integrated framework of open ocean facilities in the Atlantic from the Arctic to the Antarctic and throughout the Mediterranean, enabling an integrated, regional and multidisciplinary approach to understand natural and anthropogenic change in the ocean.

Pteropods are Undervalued Contributors to Aragonite Flux in Tropical Gyres

NASA Astrophysics Data System (ADS)

Pebody, C. A.; Lampitt, R. S.

2016-02-01

Pteropods are a large component of the animals routinely caught in sediment traps at 3000m at the NOG observatory in the North Atlantic Oligotrophic Gyre and at the SOG observatory in the South Atlantic Oligotrophic Gyre. Sediment traps have been used to collect downward settling material at NOG and SOG since 2008. Pteropods have been identified and removed from the samples during processing in line with best practice. Some of these animals maybe opportunistic swimmers, but some are most definitely broken and should be considered as a component of the downward particle flux. Samples from both locations demonstrate a sustained and sometimes seasonal flux of pteropods to the deep ocean interior. In gyre regions with low levels of particle flux compared to temperate regions, the additional mostly inorganic material supplied in the form of pteropod shells represents a large proportional increase. Our data set from both northern and southern Atlantic gyres demonstrates due consideration should be given to the importance of pteropod flux and the contribution this makes to the biological carbon pump. These observatories at 23°N 41°W and 18°S 25°W, are part of the FixO3 open observatory network and are supported by NOC and NERC. Analysis of the first three years of each observatory are now yielding new insight on these large and poorly sampled areas of the open ocean. Key words: pteropods; aragonite; sediment traps; NOG SOG; FixO3; biological carbon pump; biogeochemical cycles; Tropical Atlantic Gyres.

Tin speciation in the femtogram range in open ocean seawater by gas chromatography/inductively coupled plasma mass spectrometry using a shield torch at normal plasma conditions.

PubMed

Tao, H; Rajendran, R B; Quetel, C R; Nakazato, T; Tominaga, M; Miyazaki, A

1999-10-01

A sensitive method for the determination of ultratrace organotin species in seawater is described. The merits and demerits of derivatization methods using Grignard reagent or sodium tetraethylborate (NaBEt4) were evaluated in terms of derivatization efficiency, applicability to the programmed temperature vaporization (PTV) method, and procedural blanks. The sensitivity of the gas chromatography/inductively coupled plasma mass spectrometry (GC/ICPMS) was improved by more than 100-fold by operating the shield torch at normal plasma conditions, compared with that obtained without using it. The absolute detection limit as tin reached subfemtogram (fg) levels. Furthermore, the detection limit in terms of relative concentration was improved 100-fold by using the PTV method, which enabled the injection of a large sample volume of as much as 100 microL without loss of analyte. When the organotin species in seawater were extracted into hexane with a preconcentration factor of 1000 after ethylation with NaBEt4 and a 100 microL aliquot of the extract was injected into the GC, the instrumental detection limit in relative concentration reached 0.01 pg/L in original seawater. Sources of contamination of organotin species during the sample preparation were examined, and a purification method of NaBEt4 was developed. Finally, the method was successfully applied to open ocean seawater samples containing organotin species at the level of 1-100 pg/L.

GLODAPv2 data exploration and extraction system

NASA Astrophysics Data System (ADS)

Krassovski, Misha; Kozyr, Alex; Boden, Thomas

2016-04-01

The Global Ocean Data Analysis Project (GLODAP) is a cooperative effort of investigators funded for ocean synthesis and modeling projects by the U.S. National Oceanic and Atmospheric Administration (NOAA), Department of Energy (DOE), and National Science Foundation (NSF). Cruises conducted as part of the WOCE, JGOFS, and NOAA Ocean-Atmosphere Carbon Exchange Study (OACES) over the decade of the 1990s generated oceanographic data of unparalleled quality and quantity. GLODAPv2 is a uniformly calibrated open-ocean data product containing inorganic carbon and carbon-relevant variables. This new product includes data from approximately one million individual seawater samples collected from over 700 cruises during the period 1972-2013. Extensive quality control and subsequent calibration were carried out for salinity, oxygen, nutrient, carbon dioxide, total alkalinity, pH, and chlorofluorocarbon data. The Carbon Dioxide Information and Analysis Center (CDIAC), serving as the primary DOE disseminator for climate data and information, developed database and web accessible systems that permit users worldwide to query and retrieve data from the GLODAPv2 collection. This presentation will showcase this new system, discuss technologies used to build the GLODAPv2 resource, and describe integration with a metadata search engine provided by CDIAC as well.

Hyperspectral Imager for the Coastal Ocean (HICO): Overview, Operational Updates, and Coastal Ocean Applications

NASA Technical Reports Server (NTRS)

Davis, Curtiss O.; Kappus, Mary E.; Bowles, Jeffrey H.; Evans, Cynthia A.; Stefanov, William L.

2014-01-01

The Hyperspectral Imager for the Coastal Ocean (HICO) was built to measure in-water properties of complex coastal regions. HICO enables synoptic coverage; 100-meter spatial resolution for sampling the variability and spatial irregularity of coastal waters; and high spectral resolution to untangle the signals from chlorophyll, colored dissolved organic matter, suspended sediments and varying bottom types. HICO was built by the Naval Research Laboratory, installed on the International Space Station (ISS) in September 2009, and operated for ONR for the first three years. In 2013, NASA assumed sponsorship of operations in order to leverage HICO's ability to address their Earth monitoring mission. This has opened up access of HICO data to the broad research community. Over 8000 images are now available on NASA's Ocean Color Website (http://oceancolor.gsfc.nasa.gov/cgi/browse.pl?sen=hi). Oregon State University's HICO website (http://hico.coas.oregonstate.edu) remains the portal for researchers to request new collections and access their requested data. We will present updates on HICO's calibration and improvements in geolocation and show examples of the use of HICO data to address issues in the coastal ocean and Great Lakes.

Combined Ocean and Atmospheric Lidar Profile Results during the Ship-Aircraft Bio-Optical Experiment.

NASA Astrophysics Data System (ADS)

Hair, J. W.; Hostetler, C. A.; Hu, Y.; Behrenfeld, M. J.; Butler, C. F.; Harper, D. B.; Hare, R. J.; Berkoff, T.; Cook, A. L.; Collins, J. E., Jr.; Stockley, N.; Twardowski, M.; Cetinic, I.; Ferrare, R. A.; Mack, T. L.

2016-02-01

First of its kind combined atmospheric and ocean profile data were collected by the recently upgraded NASA Langley Research Center's (LaRC) High Spectral Resolution Lidar (HSRL-1) during the 17 July - 7 August 2014 Ship-Aircraft Bio-Optical Research Experiment (SABOR). This mission sampled over a region that covered the Gulf of Maine, open-ocean near Bermuda, and coastal waters from Virginia to Rhode Island. The HSRL-1 and the Research Scanning Polarimeter from NASA Goddard Institute for Space Studies collected data onboard the NASA LaRC King Air aircraft and flight operations were closely coordinated with the Research Vessel Endeavor that made in situ ocean optical and biological measurements. The lidar measurements provided profiles of atmospheric backscatter and particulate depolarization at 532nm, 1064nm, and extinction (532nm) from approximately 9km altitude. In addition, for the first time HSRL subsurface ocean backscatter, depolarization, and diffuse attenuation data at 532nm were collected and compared to both the ship measurements and the Moderate Resolution Imaging Spectrometer (NASA MODIS-Aqua) satellite ocean retrievals. This presentation will include an overview of the instrument and measurement methodology, show examples from the campaign, and provide preliminary comparisons with the in situ optics and satellite retrievals.

76 FR 65183 - National Oceanic and Atmospheric Administration

Federal Register 2010, 2011, 2012, 2013, 2014

2011-10-20

... DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration National Climate Assessment... Oceanic and Atmospheric Administration (NOAA), Department of Commerce (DOC). ACTION: Notice of open..., National Oceanic and Atmospheric Administration. [FR Doc. 2011-27113 Filed 10-19-11; 8:45 am] BILLING CODE...

Thalassiosira spp. community composition shifts in response to chemical and physical forcing in the northeast Pacific Ocean

PubMed Central

Chappell, P. Dreux; Whitney, LeAnn P.; Haddock, Traci L.; Menden-Deuer, Susanne; Roy, Eric G.; Wells, Mark L.; Jenkins, Bethany D.

2013-01-01

Diatoms are genetically diverse unicellular photosynthetic eukaryotes that are key primary producers in the ocean. Many of the over 100 extant diatom species in the cosmopolitan genus Thalassiosira are difficult to distinguish in mixed populations using light microscopy. Here, we examine shifts in Thalassiosira spp. composition along a coastal to open ocean transect that encountered a 3-month-old Haida eddy in the northeast Pacific Ocean. To quantify shifts in Thalassiosira species composition, we developed a targeted automated ribosomal intergenic spacer analysis (ARISA) method to identify Thalassiosira spp. in environmental samples. As many specific fragment lengths are indicative of individual Thalassiosira spp., the ARISA method is a useful screening tool to identify changes in the relative abundance and distribution of specific species. The method also enabled us to assess changes in Thalassiosira community composition in response to chemical and physical forcing. Thalassiosira spp. community composition in the core of a 3-month-old Haida eddy remained largely (>80%) similar over a 2-week period, despite moving 24 km southwestward. Shifts in Thalassiosira species correlated with changes in dissolved iron (Fe) and temperature throughout the sampling period. Simultaneously tracking community composition and relative abundance of Thalassiosira species within the physical and chemical context they occurred allowed us to identify quantitative linkages between environmental conditions and community response. PMID:24065961

Near-Surface Monsoonal Circulation of the Vietnam East Sea from Lagrangian Drifters

DTIC Science & Technology

2015-09-30

Sea from Lagrangian Drifters Luca Centurioni Scripps Institution of Oceanography 9500 Gilman Drive Mail Code 0213 La Jolla, California 92103...Contribute to the study of coastal and open ocean current systems in sparsely sampled regions such us the South China Sea (SCS), using a Lagrangian ...We intend to make new Lagrangian and Eulerian observations to measure the seasonal circulation 1) in the coastal waters of Vietnam and 2) in the SCS

δ18O water isotope in the iLOVECLIM model (version 1.0) - Part 2: Evaluation of model results against observed δ18O in water samples

NASA Astrophysics Data System (ADS)

Roche, D. M.; Caley, T.

2013-09-01

The H218O stable isotope was previously introduced in the three coupled components of the earth system model iLOVECLIM: atmosphere, ocean and vegetation. The results of a long (5000 yr) pre-industrial equilibrium simulation are presented and evaluated against measurement of H218O abundance in present-day water for the atmospheric and oceanic components. For the atmosphere, it is found that the model reproduces the observed spatial distribution and relationships to climate variables with some merit, though limitations following our approach are highlighted. Indeed, we obtain the main gradients with a robust representation of the Rayleigh distillation but caveats appear in Antarctica and around the Mediterranean region due to model limitation. For the oceanic component, the agreement between the modelled and observed distribution of water δ18O is found to be very good. Mean ocean surface latitudinal gradients are faithfully reproduced as well as the mark of the main intermediate and deep water masses. This opens large prospects for the applications in palaeoclimatic context.

δ18O water isotope in the iLOVECLIM model (version 1.0) - Part 2: Evaluation of model results against observed δ18O in water samples

NASA Astrophysics Data System (ADS)

Roche, D. M.; Caley, T.

2013-03-01

The H218O stable isotope was previously introduced in the three coupled components of the Earth System Model iLOVECLIM: atmosphere, ocean and vegetation. The results of a long (5000 yr) pre-industrial equilibrium simulation are presented and evaluated against measurement of H218O abundance in present-day water for the atmospheric and oceanic components. For the atmosphere, it is found that the model reproduces the observed spatial distribution and relationships to climate variables with some merit, though limitations following our approach are highlighted. Indeed, we obtain the main gradients with a robust representation of the Rayleigh distillation but caveats appear in Antarctica and around the Mediterranean region due to model limitation. For the oceanic component, the agreement between the modelled and observed distribution of water δ18O is found to be very good. Mean ocean surface latitudinal gradients are faithfully reproduced as well as the mark of the main intermediate and deep water masses. This opens large prospects for the applications in paleoclimatic context.

Meridional contrasts in productivity changes driven by the Cenozoic opening of Drake Passage

NASA Astrophysics Data System (ADS)

Donnadieu, Y.; Ladant, J. B.; Bopp, L.; Wilson, P. A.; Lear, C. H.

2017-12-01

The progressive opening of Drake Passage across the Eocene and the Oligocene occurs contemporaneously to the long-term global cooling of the late Eocene, which culminated with the Eocene-Oligocene glaciation of Antarctica. Atmospheric pCO2 decline during the late Eocene is thought to have played a major role in the climatic shifts of the Eocene-Oligocene boundary, yet reasons behind CO2 variations remain obscure. Changes in marine productivity affecting the biological oceanic carbon pump represent a possible cause. Here, we explore whether and how the opening of Drake Passage may have affected the marine biogeochemistry, and in particular paleoproductivity changes, with the use of a fully coupled atmosphere-ocean-biogeochemical model (IPSL-CM5A). We find that the simulated changes to Drake Passage opening exhibit a uniform decrease in the low latitudes while the high latitude response is more spatially heterogeneous. Mechanistically, the low latitude productivity decrease is a consequence of the dramatic reorganization of the ocean circulation when Drake Passage opens, as the shift from a well ventilated to a swampier ocean drives nutrient depletion in the low latitudes. In the high latitudes, the onset of the Antarctic Circumpolar Current in the model exerts a strong control both on nutrient availability but also on regions of deep water formation, which results in non-uniform patterns of productivity change in the Southern Ocean. The qualitative agreement between geographically diverse long-term paleoproductivity records and the simulated variations suggests that the opening of Drake Passage may contribute to part of the long-term paleoproductivity signal recorded in the data.

The inverse problem: Ocean tides derived from earth tide observations

NASA Technical Reports Server (NTRS)

Kuo, J. T.

1978-01-01

Indirect mapping ocean tides by means of land and island-based tidal gravity measurements is presented. The inverse scheme of linear programming is used for indirect mapping of ocean tides. Open ocean tides were measured by the numerical integration of Laplace's tidal equations.

Geochemical constraints on the origin of serpentinization of oceanic mantle

NASA Astrophysics Data System (ADS)

Li, Z.; Lee, C. A.

2004-12-01

The lower seismic zone of double seismic zones in subducting oceanic lithosphere is suggested to be a result of serpentine or chlorite dehydration in the lithospheric mantle (Hacker et al., 2003). However, the mechanism by which oceanic lithospheric mantle is serpentinized is unclear. One way is through hydrothermal circulation where the lithospheric mantle represents part of the circuit through which seawater passes and then returns to the ocean. Another way is to inject seawater into the lithospheric mantle through fractures in the overlying crust without having a return path of water to the ocean. The two mechanisms differ in that the former is an open system process whereas the latter is a closed system process in which the mantle serves as a ¡°sponge¡± for water. Identifying the dominant process is important. For example, if the mantle is part of a hydrothermal circulation cell, the interaction of seawater with the mantle will influence the composition of seawater. This also has important implications for the heat flow out of seafloor. On the other hand, if serpentinization occurs by a closed system process, there will be no influence on seawater composition. Previous studies have suggested that serpentinization of ophiolite bodies was an isochemical process, hence closed system, but it was not clear in these studies whether serpentinization occurred in situ in the oceanic lithosphere. To better understand serpentinization processes in the oceanic lithosphere, we investigated a continuous transition zone of relatively unaltered harzburgite to completely serpentinized harzburgite in the Feather River Ophiolite in northern California. These samples are highly enriched in Na, K, Rb, Cs, U, and Sr, which strongly suggests that serpentinization occurred while the oceanic lithosphere was beneath the ocean. All samples (n=19) have Al2O3 contents ranging from 0.6 to 2.5 wt.% and have extremely depleted light rare-earth element abundances, indicating that these samples are cpx-free harzburgites, which have experienced roughly 20 to 35% melt extraction. The degree of serpentinization was quantified using the concentration of magnetite, a by-product of serpentinization. The lack of antigorite suggests that serpentinization occurred at temperatures lower than 300 C. By comparing Cr and Cr/Al systematics to that predicted from theoretical partial melting calculations and empirical relationships in unaltered peridotite xenoliths, it is shown that Cr and Al are immobile. Al content was thus used to determine the composition of the protolith, which allows us to estimate the amount of depletion/enrichment of a given element by processes other than melt depletion. Most of the harzburgites show no evidence for mantle metasomatism as evidenced by extreme depletions in LREE elements. Consistent with previous studies, we find no depletions in Mg, Fe, or Ca. As seawater is undersaturated in Mg-bearing minerals, an open system process would yield progressive depletion of Mg as is seen in abyssal peridotites, which have been weathered by seawater at the bottom of the seafloor (e.g., Snow et al. 1995). Collectively, this suggests that, except for the addition of seawater and its constituents, serpentinization of the Feather River Ophiolite, was a closed system process. By combining these observations with the results of our field mapping project, we suggest that serpentinization of the lithospheric mantle occurs by local introduction of seawater through fractures extending from the crust and into the mantle. We find no evidence that serpentinized zones in oceanic lithospheric mantle represents an extremely deep hydrothermal circulation cell.

Geoengineering impact of open ocean dissolution of olivine on atmospheric CO2, surface ocean pH and marine biology

NASA Astrophysics Data System (ADS)

Köhler, Peter; Abrams, Jesse F.; Völker, Christoph; Hauck, Judith; Wolf-Gladrow, Dieter A.

2013-03-01

Ongoing global warming induced by anthropogenic emissions has opened the debate as to whether geoengineering is a ‘quick fix’ option. Here we analyse the intended and unintended effects of one specific geoengineering approach, which is enhanced weathering via the open ocean dissolution of the silicate-containing mineral olivine. This approach would not only reduce atmospheric CO2 and oppose surface ocean acidification, but would also impact on marine biology. If dissolved in the surface ocean, olivine sequesters 0.28 g carbon per g of olivine dissolved, similar to land-based enhanced weathering. Silicic acid input, a byproduct of the olivine dissolution, alters marine biology because silicate is in certain areas the limiting nutrient for diatoms. As a consequence, our model predicts a shift in phytoplankton species composition towards diatoms, altering the biological carbon pumps. Enhanced olivine dissolution, both on land and in the ocean, therefore needs to be considered as ocean fertilization. From dissolution kinetics we calculate that only olivine particles with a grain size of the order of 1 μm sink slowly enough to enable a nearly complete dissolution. The energy consumption for grinding to this small size might reduce the carbon sequestration efficiency by ˜30%.

Defining the Canary Islands Oceanic Platform (PLOCAN) Observing System mission

NASA Astrophysics Data System (ADS)

Delory, Eric; Hernández-Brito, Joaquín.; Llínas, Octavio

2010-05-01

A permanent multidisciplinary ocean observing system is planned as both a technological and scientific infrastructure for the Canary Islands Oceanic Platform (PLOCAN). The first component of its two-fold mission is to respond to systems and processes' in-situ environmental testing, certification and benchmarking requirements. This will generally take place in dedicated oceanic experimental areas, from the vicinity of the platform to the deep ocean. While these areas and related infrastructures still are at definition stage, an anticipated prerequisite is that testbed observing assets will have to provide a broad range of measurements in agreement with, as well as in contribution to, current and upcoming environmental and technical standards. The second component is to contribute to the global effort towards continuous and real-time multidisciplinary ocean observations. Related activities will encompass climate change parameters characterization as well as important regional specificities like the preservation and study of the region's unique marine biodiversity and sparsely explored seabed. Continuous sampling is planned to progressively expand from the platform vicinity down to the end of the continental slope - to about 3000m depth, the surrounding seabed and water column, then scale up to the region, through mobile systems and fixed open-ocean stations. Such a large and diverse spectrum of observing activities stems from the fact that the PLOCAN observing system is at the center of a long-term strategy, thus granting the opportunity to plan its mission by way of an ambitious set of ocean measurement methods and technologies.

Selectivity of silica species in ocean observed from seasonal and local changes

NASA Astrophysics Data System (ADS)

Tanaka, Miho; Takahashi, Kazuya; Nemoto, Masao; Horimoto, Naho

2013-03-01

Silicic acids, derived from SiO2 (silica), have several chemical forms in solution. Silica is a nutrient for diatoms, which are phytoplankton in oceans. Silica species can be used as a tracer to examine the behavior of silica in nature. The speciation for silica by FAB-MS (fast atom bombardment mass spectrometry) has been carried out for seawater samples from Tokyo Bay and Sagami Bay to investigate the seasonal and locational changes of the depth profiles of silica species. The species, [Si(OH)2O2Na+]-, [Si2(OH)5O2]- ([dimer]-), [Si2(OH)4O3Na+]-, [Si(OH)7O5-] ([cyclic tetramer]-), [Si4(OH)6O6Na+]-, [Si(OH)9O]- ([linear tetramer]-) and [Si4(OH)8O5Na+]- were mainly identified by FAB-MS. The seasonal and locational changes and the reproducibility of depth profiles of silica species were determined from October 2001 to July 2002. The depth profile of the ratio of linear tetramer to cyclic tetramer reflects the activity of diatoms, implying that the linear tetramer is the preferred "food" for diatoms. In particular, the depth profile for the ratio of linear tetramer to cyclic tetramer exhibits a critical changes that depend on the season. Furthermore, the depth profiles for the samples from Sagami Bay (open ocean) indicate that seawater is easily exchanged by ocean currents (the Japan Current). Thus, silica speciation by FAB-MS can give us a new tracer indicating the characteristics of the seawater budget, which change with depth, season and ocean locality.

The record of mantle heterogeneity preserved in Earth's oceanic crust

NASA Astrophysics Data System (ADS)

Burton, K. W.; Parkinson, I. J.; Schiano, P.; Gannoun, A.; Laubier, M.

2017-12-01

Earth's oceanic crust is produced by melting of the upper mantle where it upwells beneath mid-ocean ridges, and provides a geographically widespread elemental and isotopic `sample' of Earth's mantle. The chemistry of mid-ocean ridge basalts (MORB), therefore, holds key information on the compositional diversity of the upper mantle, but the problem remains that mixing and reaction during melt ascent acts to homogenise the chemical variations they acquire. Nearly all isotope and elemental data obtained thus far are for measurements of MORB glass, and this represents the final melt to crystallise, evolving in an open system. However, the crystals that are present are often not in equilibrium with their glass host. Melts trapped in these minerals indicate that they crystallised from primitive magmas that possess diverse compositions compared to the glass. Therefore, these melt inclusions preserve information on the true extent of the mantle that sources MORB, but are rarely amenable to precise isotope measurement. An alternative approach is to measure the isotope composition of the primitive minerals themselves. Our new isotope data indicates that these minerals crystallised from melts with significantly different isotope compositions to their glass host, pointing to a mantle source that has experienced extreme melt depletion. These primitive minerals largely crystallised in the lower oceanic crust, and our preliminary data for lower crustal rocks and minerals shows that they preserve a remarkable range of isotope compositions. Taken together, these results indicate that the upper mantle sampled by MORB is extremely heterogeneous, reflecting depletion and enrichment over much of Earth's geological history.

Natural variability of pCO2 and pH in the Atlantic and Pacific coastal margins of the U.S

NASA Astrophysics Data System (ADS)

Sutton, A. J.; Sabine, C. L.; Feely, R. A.; Newton, J.; Salisbury, J.; Vandemark, D. C.; Musielewicz, S. B.; Maenner-Jones, S.; Bott, R.; Lawrence-Slavas, N.

2011-12-01

The discovery that seawater chemistry is changing as a result of carbon dioxide (CO2) emissions, referred to as "ocean acidification", has prompted a large effort to understand how this changing chemistry will impact marine life. Changes in carbon chemistry have been documented in the open ocean; however, in dynamic coastal systems where many marine species live, ocean acidification and the natural biogeochemical variability that organisms are currently exposed to are poorly quantified. In 2010 we began equipping coastal moorings currently measuring pCO2 with pH and other biogeochemical sensors to measure ocean acidification parameters at 3 hour intervals in the surface water. Here we present the magnitude and diurnal to seasonal variability of pCO2 and pH during the first year of observations at 2 sites in the Atlantic and Pacific coastal margins of the U.S.: the Gulf of Maine and outer coast of Washington state. Both the magnitude and range of pCO2 and pH values were much greater at the coastal moorings compared to the open ocean mooring at Ocean Station Papa in the North Pacific and also varied between the two coastal mooring sites. We observed maximum pCO2 values in coastal waters exceeding predicted values for the open ocean at 2x pre-industrial CO2 levels. The range of pCO2 and pH values during this time series was approximately 4 times the range observed at open ocean mooring Papa (2007-2011 time series). In many cases, large variance was observed at short time scales, with values fluctuating more than 200 μatm pCO2 and 0.2 pH between 3-hour cycles. These types of observations are critical for understanding how ocean acidification will manifest in naturally dynamic coastal systems and for informing the experimental design of species response studies that aim to mimic carbon chemistry experienced by coastal marine organisms.

Opening Pandora's Box: The impact of open system modeling on interpretations of anoxia

NASA Astrophysics Data System (ADS)

Hotinski, Roberta M.; Kump, Lee R.; Najjar, Raymond G.

2000-06-01

The geologic record preserves evidence that vast regions of ancient oceans were once anoxic, with oxygen levels too low to sustain animal life. Because anoxic conditions have been postulated to foster deposition of petroleum source rocks and have been implicated as a kill mechanism in extinction events, the genesis of such anoxia has been an area of intense study. Most previous models of ocean oxygen cycling proposed, however, have either been qualitative or used closed-system approaches. We reexamine the question of anoxia in open-system box models in order to test the applicability of closed-system results over long timescales and find that open and closed-system modeling results may differ significantly on both short and long timescales. We also compare a scenario with basinwide diffuse upwelling (a three-box model) to a model with upwelling concentrated in the Southern Ocean (a four-box model). While a three-box modeling approach shows that only changes in high-latitude convective mixing rate and character of deepwater sources are likely to cause anoxia, four-box model experiments indicate that slowing of thermohaline circulation, a reduction in wind-driven upwelling, and changes in high-latitude export production may also cause dysoxia or anoxia in part of the deep ocean on long timescales. These results suggest that box models must capture the open-system and vertically stratified nature of the ocean to allow meaningful interpretations of long-lived episodes of anoxia.

76 FR 13999 - Meeting of the Ocean Research and Resources Advisory Panel

Federal Register 2010, 2011, 2012, 2013, 2014

2011-03-15

..., and other current issues in the ocean science and management communities; including, the review and... DEPARTMENT OF DEFENSE Department of the Navy Meeting of the Ocean Research and Resources Advisory Panel AGENCY: Department of the Navy, DoD. ACTION: Notice of open meeting. SUMMARY: The Ocean Research...

76 FR 22083 - Meeting of the Ocean Research and Resources Advisory Panel

Federal Register 2010, 2011, 2012, 2013, 2014

2011-04-20

... other current issues in the ocean science and management communities; including, the review and... DEPARTMENT OF DEFENSE Department of the Navy Meeting of the Ocean Research and Resources Advisory Panel AGENCY: Department of the Navy, DoD. ACTION: Notice of open meeting. SUMMARY: The Ocean Research...

Whole rock and discrete pyrite geochemistry as complementary tracers of ancient ocean chemistry: An example from the Neoproterozoic Doushantuo Formation, China

NASA Astrophysics Data System (ADS)

Gregory, Daniel D.; Lyons, Timothy W.; Large, Ross R.; Jiang, Ganqing; Stepanov, Aleksandr S.; Diamond, Charles W.; Figueroa, Maria C.; Olin, Paul

2017-11-01

The trace element content of pyrite is a recently developed proxy for metal abundance in paleo-oceans. Previous studies have shown that the results broadly match those of whole rock studies through geologic time. However, no detailed study has evaluated the more traditional proxies for ocean chemistry for comparison to pyrite trace element data from the same samples. In this study we compare pyrite trace element data from 14 samples from the Wuhe section of the Ediacaran-age Doushantuo Formation, south China, measured by laser ablation inductively coupled plasma mass spectrometry with new and existing whole rock trace element concentrations; total organic carbon; Fe mineral speciation; S isotope ratios; and pyrite textural relationships. This approach allows for comparison of data for individual trace elements within the broader environmental context defined by the other chemical parameters. The results for discrete pyrite analyses show that several chalcophile and siderophile elements (Ag, Sb, Se, Pb, Cd, Te, Bi, Mo, Ni, and Au) vary among the samples with patterns that mirror those of the independent whole rock data. A comparison with existing databases for sedimentary and hydrothermal pyrite allows us to discriminate between signatures of changing ocean conditions and those of known hydrothermal sources. In the case of the Wuhe samples, the observed patterns for trace element variation point to primary marine controls rather than higher temperature processes. Specifically, our new data are consistent with previous arguments for pulses of redox sensitive trace elements interpreted to be due to marine oxygenation against a backdrop of mostly O2-poor conditions in the Ediacaran ocean-with important implications for the availability of bioessential elements. The agreement between the pyrite and whole rock data supports the use of trace element content of pyrite as a tracer of ocean chemistry in ways that complement existing approaches, while also opening additional windows of opportunity. For example, unlike the potential vulnerability of whole rock data to secondary alteration, the pyrite record may survive greenschist facies metamorphism. Furthermore, early-formed pyrite can be identified through textural relationships as a proxy of primary marine chemistry even in the presence of hydrothermal overprints on whole rock chemistry via secondary fluids. Finally, pyrite analyses may allow for the possibility of more quantitative interpretations of the ancient ocean once the elemental partitioning between the mineral and host fluids are better constrained. Collectively, these advances can greatly increase the number of basins that may be investigated for early ocean chemistry, especially those of Precambrian age.

Oceanic corrosion test of bare and zinc-protected aluminum alloys for seawater heat exchangers

NASA Technical Reports Server (NTRS)

Sasscer, D. S.; Morgan, T. O.; Rivera, C.; Ernst, R.; Scott, A. C.; Summerson, T. J.

1982-01-01

Bare 3004 tubes, 7072 Alclad 3004 tubes, and bare and zinc diffusion treated 3003 extrusions from a brazed aluminum, plate-fin heat exchanger were exposed to 1.8 m/sec flowing seawater aboard an open ocean test facility moored 3.4 km off the southeast coast of Puerto Rico. After six months exposure, the average corrosion rates for most varieties of aluminum materials converged to a low value of 0.015 mm/yr (0.6 mils/yr). Pitting did not occur in bare 3003 and 3004 samples during the six month test. Pitting did occur to varying degrees in the Alclad and zinc diffusion treated material, but did not penetrate to the base metal. Biofouling countermeasures (intermittent chlorination and brushing) did not affect the corrosion rates to any significant extent. Intermittent chlorination at a level of 0.5 ppm for 28 minutes daily controlled microbiofouling of the samples but did not prevent the development of a macrobiofouling community in areas of the plumbing with low flow.

The global distribution and dynamics of chromophoric dissolved organic matter.

PubMed

Nelson, Norman B; Siegel, David A

2013-01-01

Chromophoric dissolved organic matter (CDOM) is a ubiquitous component of the open ocean dissolved matter pool, and is important owing to its influence on the optical properties of the water column, its role in photochemistry and photobiology, and its utility as a tracer of deep ocean biogeochemical processes and circulation. In this review, we discuss the global distribution and dynamics of CDOM in the ocean, concentrating on developments in the past 10 years and restricting our discussion to open ocean and deep ocean (below the main thermocline) environments. CDOM has been demonstrated to exert primary control on ocean color by its absorption of light energy, which matches or exceeds that of phytoplankton pigments in most cases. This has important implications for assessing the ocean biosphere via ocean color-based remote sensing and the evaluation of ocean photochemical and photobiological processes. The general distribution of CDOM in the global ocean is controlled by a balance between production (primarily microbial remineralization of organic matter) and photolysis, with vertical ventilation circulation playing an important role in transporting CDOM to and from intermediate water masses. Significant decadal-scale fluctuations in the abundance of global surface ocean CDOM have been observed using remote sensing, indicating a potentially important role for CDOM in ocean-climate connections through its impact on photochemistry and photobiology.

Improvement of the AeroClipper system for cyclones monitoring

NASA Astrophysics Data System (ADS)

Vargas, André; Philippe, Duvel Jean

2016-07-01

The AeroClipper developed by the French space agency (Centre National d'Études Spatiales, CNES) is a quasi-lagrangian device drifting with surface wind at about 20-30m above the ocean surface. It is a new and original device for real-time and continuous observation of air-sea surface parameters in open ocean remote regions. This device enables the sampling of the variability of surface parameters in particular under convective systems toward which it is attracted. The AeroClipper is therefore an ideal instrument to monitor Tropical Cyclones (TCs) in which they are likely to converge and provide original observations to evaluate and improve our current understanding and diagnostics of TCs as well as their representation in numerical models. In 2008, the AeroClipper demonstrates its capability to be captured by an Ocean Indian cyclone, as two models have converged, without damages, in the eye of Dora cyclone during the 2008 VASCO campaign. This paper will present the improvements of this balloon system for the international project 'the Year of Maritime Continent'.

In situ imaging reveals the biomass of giant protists in the global ocean.

PubMed

Biard, Tristan; Stemmann, Lars; Picheral, Marc; Mayot, Nicolas; Vandromme, Pieter; Hauss, Helena; Gorsky, Gabriel; Guidi, Lionel; Kiko, Rainer; Not, Fabrice

2016-04-28

Planktonic organisms play crucial roles in oceanic food webs and global biogeochemical cycles. Most of our knowledge about the ecological impact of large zooplankton stems from research on abundant and robust crustaceans, and in particular copepods. A number of the other organisms that comprise planktonic communities are fragile, and therefore hard to sample and quantify, meaning that their abundances and effects on oceanic ecosystems are poorly understood. Here, using data from a worldwide in situ imaging survey of plankton larger than 600 μm, we show that a substantial part of the biomass of this size fraction consists of giant protists belonging to the Rhizaria, a super-group of mostly fragile unicellular marine organisms that includes the taxa Phaeodaria and Radiolaria (for example, orders Collodaria and Acantharia). Globally, we estimate that rhizarians in the top 200 m of world oceans represent a standing stock of 0.089 Pg carbon, equivalent to 5.2% of the total oceanic biota carbon reservoir. In the vast oligotrophic intertropical open oceans, rhizarian biomass is estimated to be equivalent to that of all other mesozooplankton (plankton in the size range 0.2-20 mm). The photosymbiotic association of many rhizarians with microalgae may be an important factor in explaining their distribution. The previously overlooked importance of these giant protists across the widest ecosystem on the planet changes our understanding of marine planktonic ecosystems.

Approaches to Linked Open Data at data.oceandrilling.org

NASA Astrophysics Data System (ADS)

Fils, D.

2012-12-01

The data.oceandrilling.org web application applies Linked Open Data (LOD) patterns to expose Deep Sea Drilling Project (DSDP), Ocean Drilling Program (ODP) and Integrated Ocean Drilling Program (IODP) data. Ocean drilling data is represented in a rich range of data formats: high resolution images, file based data sets and sample based data. This richness of data types has been well met by semantic approaches and will be demonstrated. Data has been extracted from CSV, HTML and RDBMS through custom software and existing packages for loading into a SPARQL 1.1 compliant triple store. Practices have been developed to streamline the maintenance of the RDF graphs and properly expose them using LOD approaches like VoID and HTML embedded structured data. Custom and existing vocabularies are used to allow semantic relations between resources. Use of the W3c draft RDF Data Cube Vocabulary and other approaches for encoding time scales, taxonomic fossil data and other graphs will be shown. A software layer written in Google Go mediates the RDF to web pipeline. The approach used is general and can be applied to other similar environments like node.js or Python Twisted. To facilitate communication user interface software libraries such as D3 and packages such as S2S and LodLive have been used. Additionally OpenSearch API's, structured data in HTML and SPARQL endpoints provide various access methods for applications. The data.oceandrilling.org is not viewed as a web site but as an application that communicate with a range of clients. This approach helps guide the development more along software practices than along web site authoring approaches.

A statistical analysis of North East Atlantic (submicron) aerosol size distributions

NASA Astrophysics Data System (ADS)

Dall'Osto, M.; Monahan, C.; Greaney, R.; Beddows, D. C. S.; Harrison, R. M.; Ceburnis, D.; O'Dowd, C. D.

2011-08-01

The Global Atmospheric Watch research station at Mace Head (Ireland) offers the possibility to sample some of the cleanest air masses being imported into Europe as well as some of the most polluted being exported out of Europe. We present a statistical Cluster~analysis of the physical characteristics of aerosol size distributions in air ranging from the cleanest to the most polluted for the year 2008. Data coverage achieved was 75 % throughout the year. By applying the Hartigan-Wong k-Means method, 12 Clusters were identified as systematically occurring and these 12 Clusters could be further combined into 4 categories with similar characteristics, namely: coastal nucleation category (occurring 21.3 % of the time), open ocean nucleation category (occurring 32.6 % of the time), background clean marine category (occurring 26.1 % of the time) and anthropogenic category (occurring 20 % of the time) aerosol size distributions. The coastal nucleation category is characterised by a clear and dominant nucleation mode at sizes less that 10 nm while the open ocean nucleation category is characterised by a dominant Aitken mode between 15 nm and 50 nm. The background clean marine characteristic is a clear bimodality in the size distribution, although it should be noted that either the Aitken mode or the Accumulation mode may dominate the number concentration. By contrast, the continentally-influenced size distributions are generally more mono-modal, albeit with traces of bi-modality. The open ocean category occurs more often during May, June and July, corresponding with the N. E. Atlantic high biological period. Combined with the relatively high percentage frequency of occurrence (32.6 %), this suggests that the marine biota is an important source of new aerosol particles in N. E. Atlantic Air.

Coastal retracking using along-track echograms and its dependency on coastal topography

NASA Astrophysics Data System (ADS)

Ichikawa, K.; Wang, X.

2017-12-01

Although the Brown mathematical model is the standard model for waveform retracking over open oceans, coastal waveforms usually deviate from open ocean waveform shapes due to inhomogeneous surface reflections within altimeter footprints, and thus cannot be directly interpreted by the Brown model. Generally, the two primary sources of heterogeneous surface reflections are land surfaces and bright targets such as calm surface water. The former reduces echo power, while the latter often produces particularly strong echoes. In previous studies, sub-waveform retrackers, which use waveform samples collected from around leading edges in order to avoid trailing edge noise, have been recommended for coastal waveform retracking. In the present study, the peaky-type noise caused by fixed-point bright targets is explicitly detected and masked using the parabolic signature in the sequential along-track waveforms (or, azimuth-range echograms). Moreover, the power deficit of waveform trailing edges caused by weak land reflections is compensated for by estimating the ratio of sea surface area within each annular footprint in order to produce pseudo-homogeneous reflected waveforms suitable for the Brown model. Using this method, Jason-2 altimeter waveforms are retracked in several coastal areas. Our results show that both the correlation coefficient and root mean square difference between the derived sea surface height anomalies and tide gauge records retain similar values at the open ocean (0.9 and 20 cm) level, even in areas approaching 3 km from coastlines, which is considerably improved from the 10 km correlation coefficient limit of the conventional MLE4 retracker and the 7 km sub-waveform ALES retracker limit. These values, however, depend on the coastal topography of the study areas because the approach distance limit increases (decreases) in areas with complicated (straight) coastlines

Rare-earth elements in the Permian Phosphoria Formation: Paleo proxies of ocean geochemistry

USGS Publications Warehouse

Piper, D.Z.; Perkins, R.B.; Rowe, H.D.

2007-01-01

The geochemistry of deposition of the Meade Peak Member of the Phosphoria Formation (MPM) in southeast Idaho, USA, a world-class sedimentary phosphate deposit of Permian age that extends over 300,000 km2, is ascertained from its rare earth element (REE) composition. Ratios of REE:Al2O3 suggest two sources-seawater and terrigenous debris. The seawater-derived marine fraction identifies bottom water in the Phosphoria Sea as O2-depleted, denitrifying (suboxic) most of the time, and seldom sulfate-reducing (anoxic). This interpretation is supported by earlier research that showed progressively greater ratios in the marine sediment fraction of Cr:Ni>V:Ni???Mo:Ni, relative to their ratios in seawater; for which marine Cr, V, and Mo can have a dominantly O2-depleted bottom-water source and Ni a photic-zone, largely algal, source. The water chemistry was maintained by a balance between bacterial oxidation of organic matter settling through the water column, determined largely by primary productivity in the photic zone, and the flux of oxidants into the bottom water via advection of seawater from the open ocean. Samples strongly enriched in carbonate fluorapatite, the dominant REE host mineral, have variable Er/Sm, Tm/Sm, and Yb/Sm ratios. Their distribution may represent greater advection of seawater between the Phosphoria Sea and open ocean during deposition of two ore zones than a center waste and greater upwelling of nutrient-enriched water into the photic zone. However, the mean rate of deposition of marine Ni, a trace nutrient of algae, and PO43-, a limiting nutrient, indicate that primary productivity was probably high throughout the depositional history. An alternative interpretation of the variable enrichments of Er, Tm, and Yb, relative to Sm, is that they may reflect temporally variable carbonate alkalinity of open-ocean seawater in Permian time. A more strongly negative Ce anomaly for all phosphatic units than the Ce anomaly of modern pelletal phosphate is further indicative of an elevated O2 concentration in the Permo-Carboniferous open ocean, as proposed by others, in contrast to the depletion of O2 in the bottom water of the Phosphoria Sea itself. The oceanographic conditions under which the deposit accumulated were likely similar to conditions under which many sedimentary phosphate deposits have accumulated and to conditions under which many black shales that are commonly phosphate poor have accumulated. A shortcoming of several earlier studies of these deposits has resulted from a failure to examine the marine fraction of elements separate from the terrigenous fraction. ?? 2007 Elsevier Ltd. All rights reserved.

Rare-earth elements in the Permian Phosphoria Formation: Paleo proxies of ocean geochemistry

NASA Astrophysics Data System (ADS)

Piper, D. Z.; Perkins, R. B.; Rowe, H. D.

2007-06-01

The geochemistry of deposition of the Meade Peak Member of the Phosphoria Formation (MPM) in southeast Idaho, USA, a world-class sedimentary phosphate deposit of Permian age that extends over 300,000 km 2, is ascertained from its rare earth element (REE) composition. Ratios of REE:Al 2O 3 suggest two sources—seawater and terrigenous debris. The seawater-derived marine fraction identifies bottom water in the Phosphoria Sea as O 2-depleted, denitrifying (suboxic) most of the time, and seldom sulfate-reducing (anoxic). This interpretation is supported by earlier research that showed progressively greater ratios in the marine sediment fraction of Cr:Ni>V:Ni≫Mo:Ni, relative to their ratios in seawater; for which marine Cr, V, and Mo can have a dominantly O 2-depleted bottom-water source and Ni a photic-zone, largely algal, source. The water chemistry was maintained by a balance between bacterial oxidation of organic matter settling through the water column, determined largely by primary productivity in the photic zone, and the flux of oxidants into the bottom water via advection of seawater from the open ocean. Samples strongly enriched in carbonate fluorapatite, the dominant REE host mineral, have variable Er/Sm, Tm/Sm, and Yb/Sm ratios. Their distribution may represent greater advection of seawater between the Phosphoria Sea and open ocean during deposition of two ore zones than a center waste and greater upwelling of nutrient-enriched water into the photic zone. However, the mean rate of deposition of marine Ni, a trace nutrient of algae, and PO 43-, a limiting nutrient, indicate that primary productivity was probably high throughout the depositional history. An alternative interpretation of the variable enrichments of Er, Tm, and Yb, relative to Sm, is that they may reflect temporally variable carbonate alkalinity of open-ocean seawater in Permian time. A more strongly negative Ce anomaly for all phosphatic units than the Ce anomaly of modern pelletal phosphate is further indicative of an elevated O 2 concentration in the Permo-Carboniferous open ocean, as proposed by others, in contrast to the depletion of O 2 in the bottom water of the Phosphoria Sea itself. The oceanographic conditions under which the deposit accumulated were likely similar to conditions under which many sedimentary phosphate deposits have accumulated and to conditions under which many black shales that are commonly phosphate poor have accumulated. A shortcoming of several earlier studies of these deposits has resulted from a failure to examine the marine fraction of elements separate from the terrigenous fraction.

NASA Oceanic Processes Program, Fiscal Year 1981

NASA Technical Reports Server (NTRS)

1982-01-01

Summaries are included for Nimbus 7, Seasat, TIROS-N, Altimetry, Color Radiometry, in situ data collection systems, Synthetic Aperture Radar (SAR)/Open Ocean, SAR/Sea Ice, Scatterometry, National Oceanic Satellite System, Free Flying Imaging Radar Experiment, TIROS-N/Scatterometer and/or ocean color scanner, and Ocean Topography Experiment. Summaries of individual research projects sponsored by the Ocean Processes Program are given. Twelve investigations for which contracting services are provided by NOAA are included.

Low reservoir ages for the surface ocean from mid-Holocene Florida corals

USGS Publications Warehouse

Druffel, E.R.M.; Robinson, L.F.; Griffin, S.; Halley, R.B.; Southon, J.R.; Adkins, J.F.

2008-01-01

The 14C reservoir age of the surface ocean was determined for two Holocene periods (4908-4955 and 3008-3066 calendar (cal) B.P.) using U/Th-dated corals from Biscayne National Park, Florida, United States. We found that the average reservoir ages for these two time periods (294 ?? 33 and 291 ?? 27 years, respectively) were lower than the average value between A.D. 1600 and 1900 (390 ?? 60 years) from corals. It appears that the surface ocean was closer to isotopic equilibrium with CO2 in the atmosphere during these two time periods than it was during recent times. Seasonal ??18O measurements from the younger coral are similar to modern values, suggesting that mixing with open ocean waters was indeed occurring during this coral's lifetime. Likely explanations for the lower reservoir age include increased stratification of the surface ocean or increased ??14C values of subsurface waters that mix into the surface. Our results imply that a more correct reservoir age correction for radiocarbon measurements of marine samples in this location from the time periods ???3040 and ???4930 cal years B.P. is ???292 ?? 30 years, less than the canonical value of 404 ?? 20 years. Copyright 2008 by the American Geophysical Union.

A redox-stratified ocean 3.2 billion years ago

NASA Astrophysics Data System (ADS)

Satkoski, Aaron M.; Beukes, Nicolas J.; Li, Weiqiang; Beard, Brian L.; Johnson, Clark M.

2015-11-01

Before the Great Oxidation Event (GOE) 2.4-2.2 billion years ago it has been traditionally thought that oceanic water columns were uniformly anoxic due to a lack of oxygen-producing microorganisms. Recently, however, it has been proposed that transient oxygenation of shallow seawater occurred between 2.8 and 3.0 billion years ago. Here, we present a novel combination of stable Fe and radiogenic U-Th-Pb isotope data that demonstrate significant oxygen contents in the shallow oceans at 3.2 Ga, based on analysis of the Manzimnyama Banded Iron Formation (BIF), Fig Tree Group, South Africa. This unit is exceptional in that proximal, shallow-water and distal, deep-water facies are preserved. When compared to the distal, deep-water facies, the proximal samples show elevated U concentrations and moderately positive δ56Fe values, indicating vertical stratification in dissolved oxygen contents. Confirmation of oxidizing conditions using U abundances is robustly constrained using samples that have been closed to U and Pb mobility using U-Th-Pb geochronology. Although redox-sensitive elements have been commonly used in ancient rocks to infer redox conditions, post-depositional element mobility has been rarely tested, and U-Th-Pb geochronology can constrain open- or closed-system behavior. The U abundances and δ56Fe values of the Manzimnyama BIF suggest the proximal, shallow-water samples record precipitation under stronger oxidizing conditions compared to the distal deeper-water facies, which in turn indicates the existence of a discrete redox boundary between deep and shallow ocean waters at this time; this work, therefore, documents the oldest known preserved marine redox gradient in the rock record. The relative enrichment of O2 in the upper water column is likely due to the existence of oxygen-producing microorganisms such as cyanobacteria. These results provide a new approach for identifying free oxygen in Earth's ancient oceans, including confirming the age of redox proxies, and indicate that cyanobacteria evolved prior to 3.2 Ga.

The growth of finfish in global open-ocean aquaculture under climate change.

PubMed

Klinger, Dane H; Levin, Simon A; Watson, James R

2017-10-11

Aquaculture production is projected to expand from land-based operations to the open ocean as demand for seafood grows and competition increases for inputs to land-based aquaculture, such as freshwater and suitable land. In contrast to land-based production, open-ocean aquaculture is constrained by oceanographic factors, such as current speeds and seawater temperature, which are dynamic in time and space, and cannot easily be controlled. As such, the potential for offshore aquaculture to increase seafood production is tied to the physical state of the oceans. We employ a novel spatial model to estimate the potential of open-ocean finfish aquaculture globally, given physical, biological and technological constraints. Finfish growth potential for three common aquaculture species representing different thermal guilds-Atlantic salmon ( Salmo salar ), gilthead seabream ( Sparus aurata ) and cobia ( Rachycentron canadum )-is compared across species and regions and with climate change, based on outputs of a high-resolution global climate model. Globally, there are ample areas that are physically suitable for fish growth and potential expansion of the nascent aquaculture industry. The effects of climate change are heterogeneous across species and regions, but areas with existing aquaculture industries are likely to see increases in growth rates. In areas where climate change results in reduced growth rates, adaptation measures, such as selective breeding, can probably offset potential production losses. © 2017 The Author(s).

Disentangling the record of diagenesis, local redox conditions, and global seawater chemistry during the latest Ordovician glaciation

NASA Astrophysics Data System (ADS)

Ahm, Anne-Sofie C.; Bjerrum, Christian J.; Hammarlund, Emma U.

2017-02-01

The Late Ordovician stratigraphic record integrates glacio-eustatic processes, water-column redox conditions and carbon cycle dynamics. This complex stratigraphic record, however, is dominated by deposits from epeiric seas that are susceptible to local physical and chemical processes decoupled from the open ocean. This study contributes a unique deep water basinal perspective to the Late Ordovician (Hirnantian) glacial record and the perturbations in seawater chemistry that may have contributed to the Hirnantian mass extinction event. We analyze recently drilled cores and outcrop samples from the upper Vinini Formation in central Nevada and report combined trace- and major element geochemistry, Fe speciation (FePy /FeHR and FeHR /FeT), and stable isotope chemostratigraphy (δ13COrg and δ34SPy). Measurements of paired samples from outcrop and core reveal that reactive Fe is preserved mainly as pyrite in core samples, while outcrop samples have been significantly altered as pyrite has been oxidized and remobilized by modern weathering processes. Fe speciation in the more pristine core samples indicates persistent deep water anoxia, at least locally through the Late Ordovician, in contrast to the prevailing interpretation of increased Hirnantian water column oxygenation in shallower environments. Deep water redox conditions were likely decoupled from shallower environments by a basinal shift in organic matter export driven by decreasing rates of organic matter degradation and decreasing shelf areas. The variable magnitude in the record of the Hirnantian carbon isotope excursion may be explained by this increased storage of isotopically light carbon in the deep ocean which, in combination with increased glacio-eustatic restriction, would strengthen lateral- and vertical gradients in seawater chemistry. We adopt multivariate statistical methods to deconstruct the spatial and temporal re-organization of seawater chemistry during the Hirnantian glaciation and attempt to isolate the latent magnitude and global perturbation in the carbon cycle. We speculate, using a two component mixing model and residual estimates from principal component analysis, that the secular open ocean Hirnantian C isotope excursion possibly amounts to only ∼ +1.5‰. Such an increase could be mechanistically driven by the combination of sea-level fall, persistent deep water anoxia, and cooler glacial temperatures that increased the organic carbon burial efficiency in the deeper basins.

Spatial variability of particle-attached and free-living bacterial diversity in surface waters from the Mackenzie River to the Beaufort Sea (Canadian Arctic)

NASA Astrophysics Data System (ADS)

Ortega-Retuerta, E.; Joux, F.; Jeffrey, W. H.; Ghiglione, J.-F.

2012-12-01

We explored the patterns of total and active bacterial community structure in a gradient covering surface waters from the Mackenzie River to the coastal Beaufort Sea, Canadian Arctic Ocean, with a particular focus on free-living vs. particle-attached communities. Capillary electrophoresis-single strand conformation polymorphism (CE-SSCP) showed significant differences when comparing river, coast and open sea bacterial community structures. In contrast to the river and coastal waters, total (16S rDNA-based) and active (16S rRNA-based) communities in the open sea samples were not significantly different, suggesting that most present bacterial groups were equally active in this area. Additionally, we observed significant differences between particle-attached (PA) and free-living (FL) bacterial communities in the open sea, but similar structure in the two fractions for coastal and river samples. Direct multivariate statistical analyses showed that total community structure was mainly driven by salinity (proxy of DOC and CDOM), suspended particles, amino acids and chlorophyll a. 16S rRNA genes pyrosequencing of selected samples confirmed these significant differences from river to sea and also between PA and FL fractions only in open sea samples, and PA samples generally showed higher diversity (Shannon, Simpson and Chao indices) than FL samples. At the class level, Opitutae was most abundant in the PA fraction of the sea sample, followed by Flavobacteria and Gammaproteobacteria, while the FL sea sample was dominated by Alphaproteobacteria. Finally, the coast and river samples, both PA and FL fractions, were dominated by Betaproteobacteria, Alphaproteobacteria and Actinobacteria. These results highlight the coexistence of particle specialists and generalists and the role of particle quality in structuring bacterial communities in the area. These results may also serve as a~basis to predict further changes in bacterial communities should climate change lead to further increases in river discharge and related particles load.

Atmospheric deposition fluxes and solubility over the Southern Indian Ocean: time series on Kerguelen and Crozet Islands.

NASA Astrophysics Data System (ADS)

Heimburger, Alexie; Losno, Remi; Triquet, Sylvain; Bon Nguyen, Elisabeth

2013-04-01

Atmospheric supplies bringing trace metals are suspected to have a significant impact on biogeochemical processes in High-Nutrient-Low-Chlorophyll waters of the open ocean, such as the Southern Ocean. We recorded time series of atmospheric deposition samples continuously collected over two years on Kerguelen and Crozet Islands in the Southern Indian Ocean. Dust deposition flux and scavenging ratio on Kerguelen Islands were reported in a previous publication [Heimburger et al., GBC, 2012]. Here, we present results of total atmospheric deposition fluxes for a large suite of elements (Al, As, Ba, Ca, Ce, Co, Cr, Cu, Fe, K, La, Li, Mg, Mn, Na, Nd, Ni, Pb including isotopes, Rb, S, Si, Sr, Ti, U, V, Zn), which are identified as coming either from sea-salt, crustal or anthropogenic sources. Enrichment factor variabilities for Pb, As, Cr, Cu and V and Pb isotopic ratios highlight the anthropogenic contribution during the austral winter only. For Al, Fe, Mn and Si, deposition fluxes are similar for both Kerguelen and Crozet Islands, which are situated 1300 km apart, and so can be extrapolated for the entire Southern Indian Ocean. Over the entire sampling period, those fluxes are on average equal to 53 ± 2 µg/m²/d, 33 ± 1 µg/m²/d, 0.83 ± 0.04 µg/m²/d and 88 ± 14 µg/m²/d respectively. For the other non-sea-salt elements, we observed differences between flux values from a factor of two to a factor of five with a decreasing gradient from Crozet to Kerguelen Islands. One-month field experiments were also performed during four different austral summers in order to collect rain water on an event basis. Soluble and insoluble fractions were directly separated by filtration and analysed using High Resolution - Inductively Coupled Plasma - Mass Spectrometry and Inductively Coupled Plasma-Atomic Emission Spectrometry as done for deposition samples. Concentrations in rain water samples are very low and difficult to measure accurately mainly because of possible contamination issues. Deduced solubility vary on a large extend but those variabilities are correlated between all the crustal elements.

Initial Sample Analyses inside a Capsule: A Strategy of Life Detection and Planetary Protection for Ocean World Sample Return Missions

NASA Astrophysics Data System (ADS)

Yano, Hajime; Takano, Yoshinori; Sekine, Yasuhito; Takai, Ken; Funase, Ryu; Fujishima, Kosuke; Shibuya, Takazo

2016-07-01

Planetary protection is considered to be one of the most crucial challenges to enable sample return missions from "Ocean Worlds", internal oceans of icy satellites as potential deep habitat such as Enceladus and Europa, due to the risk of backward contamination of bringing back potential biology-related matters or at most, possible extraterrestrial living signatures to the Earth. Here we propose an innovative technological solution for both life detection and planetary protection of such returned samples, namely by conducting all major life signature searches, which are also a critical path of quarantine processes of planetary protection, inside the Earth return capsule, prior to open the canister and expose to the terrestrial environment. We plan to test the latest sample capture and recovery methods of preparing multiple aliquot chambers in the sample return capsule. Each aliquot chamber will trap, for instance, plume particles and ambient volatiles during the spacecraft flying through Enceladus plumes so that respective analyses can be performed focusing on volatiles and minerals (i.e., habitability for life), organics (i.e., ingredients for life), biosignatures (i.e., activity of life) and for archiving the samples for future investigations at the same time. In-situ analysis will be conducted under complete containment through an optical interface port that allows pre-installed fiber optic cables to perform non-contact measurements and capillary tubing for extraction/injection of gas and liquids through metal barriers to be punctuated inside a controlled environment. Once primary investigations are completed, the interior of the capsule will be sterilized by gamma rays and UV irradiation. Post-sterilized aliquot chambers will be further analyzed under enclosed and ultraclean environment at BAL 2-3 facilities, rather than BSL4. We consider that this is an unique solution that can cope with severe requirements set for the Category-V sample returns for astrobiology-driven missions.

Open Vessel Data Management (OpenVDM), Open-source Software to Assist Vessel Operators with the Task of Ship-wide Data Management.

NASA Astrophysics Data System (ADS)

Pinner, J. W., IV

2016-02-01

Data from shipboard oceanographic sensors are collected in various ASCii, binary, open and proprietary formats. Acquiring all of these formats using single, monolithic data acquisition system (DAS) can be cumbersome, complex and difficult to adapt for the ever changing suite of emerging oceanographic sensors. Another approach to the at-sea data acquisition challenge is to utilize multiple DAS software packages and corral the resulting data files with a ship-wide data management system. The Open Vessel Data Management project (OpenVDM) implements this second approach to ship-wide data management and over the last three years has successfully demonstrated it's ability to deliver a consistent cruise data package to scientists while reducing the workload placed on marine technicians. In addition to meeting the at-sea and post-cruise needs of scientists OpenVDM is helping vessel operators better adhere to the recommendations and best practices set forth by 3rd party data management and data quality groups such as R2R and SAMOS. OpenVDM also includes tools for supporting telepresence-enabled ocean research/exploration such as bandwidth-efficient ship-to-shore data transfers, shore-side data access, data visualization and near-real-time data quality tests and data statistics. OpenVDM is currently operating aboard three vessels. The R/V Endeavor, operated by the University of Rhode Island, is a regional-class UNOLS research vessel operating under the traditional NFS, P.I. driven model. The E/V Nautilus, operated by the Ocean Exploration Trust specializes in ROV-based, telepresence-enabled oceanographic research. The R/V Falkor operated by the Schmidt Ocean Institute is an ocean research platform focusing on cutting-edge technology development. These three vessels all have different missions, sensor suites and operating models yet all are able to leverage OpenVDM for managing their unique datasets and delivering a more consistent cruise data package to scientists and data archives.

The Growing Human Footprint on Coastal and Open-Ocean Biogeochemistry

NASA Astrophysics Data System (ADS)

Doney, Scott C.

2010-06-01

Climate change, rising atmospheric carbon dioxide, excess nutrient inputs, and pollution in its many forms are fundamentally altering the chemistry of the ocean, often on a global scale and, in some cases, at rates greatly exceeding those in the historical and recent geological record. Major observed trends include a shift in the acid-base chemistry of seawater, reduced subsurface oxygen both in near-shore coastal water and in the open ocean, rising coastal nitrogen levels, and widespread increase in mercury and persistent organic pollutants. Most of these perturbations, tied either directly or indirectly to human fossil fuel combustion, fertilizer use, and industrial activity, are projected to grow in coming decades, resulting in increasing negative impacts on ocean biota and marine resources.

The growing human footprint on coastal and open-ocean biogeochemistry.

PubMed

Doney, Scott C

2010-06-18

Climate change, rising atmospheric carbon dioxide, excess nutrient inputs, and pollution in its many forms are fundamentally altering the chemistry of the ocean, often on a global scale and, in some cases, at rates greatly exceeding those in the historical and recent geological record. Major observed trends include a shift in the acid-base chemistry of seawater, reduced subsurface oxygen both in near-shore coastal water and in the open ocean, rising coastal nitrogen levels, and widespread increase in mercury and persistent organic pollutants. Most of these perturbations, tied either directly or indirectly to human fossil fuel combustion, fertilizer use, and industrial activity, are projected to grow in coming decades, resulting in increasing negative impacts on ocean biota and marine resources.

Warming and surface ocean acidification over the last deglaciation: implications for foraminiferal assemblages

NASA Astrophysics Data System (ADS)

Dyez, K. A.; Hoenisch, B.; deMenocal, P. B.

2017-12-01

Although plankton drift with ocean currents, their presence and relative abundance varies across latitudes and environmental seawater conditions (e.g. temperature, pH, salinity). While earlier studies have focused on temperature as the primary factor for determining the regional species composition of planktic foraminiferal communities, evidence has recently been presented that foraminiferal shell thickness varies with ocean pH, and it remains unclear whether ongoing ocean acidification will cause ecological shifts within this plankton group. The transition from the last glacial maximum (LGM; 19,000-23,000 years B.P.) to the late Holocene (0-5,000 years B.P.) was characterized by both warming and acidification of the surface ocean, and thus provides an opportunity to study ecosystem shifts in response to these environmental changes. Here we provide new δ11B, Mg/Ca, and δ18O measurements from a suite of global sediment cores spanning this time range. We use these geochemical data to reconstruct ocean temperature, pH and salinity and pair the new data with previously published analyses of planktic foraminifera assemblages to study the respective effects of ocean warming and acidification on the foraminiferal habitat. At most open-ocean sample locations, our proxies indicate warming and acidification similar to previously published estimates, but in some marginal seas and coastal locations pH changes little between over the glacial termination. At face value, these observations suggest that warming is generally more important for ecosystem changes than acidification, at least over the slow rates of warming and ocean acidification in this time period. While geochemical data collection is being completed, we aim to include these data in an ecological model of foraminiferal habitat preferences.

Forecasting tsunamis in Poverty Bay, New Zealand, with deep-ocean gauges

NASA Astrophysics Data System (ADS)

Power, William; Tolkova, Elena

2013-12-01

The response/transfer function of a coastal site to a remote open-ocean point is introduced, with the intent to directly convert open-ocean measurements into the wave time history at the site. We show that the tsunami wave at the site can be predicted as the wave is measured in the open ocean as far as 1,000+ km away from the site, with a straightforward computation which can be performed almost instantaneously. The suggested formalism is demonstrated for the purpose of tsunami forecasting in Poverty Bay, in the Gisborne region of New Zealand. Directional sensitivity of the site response due to different conditions for the excitation of the shelf and the bay's normal modes is investigated and used to explain tsunami observations. The suggested response function formalism is validated with available records of the 2010 Chilean tsunami at Gisborne tide gauge and at the nearby deep-ocean assessment and reporting of tsunamis (DART) station 54401. The suggested technique is also demonstrated by hindcasting the 2011 Tohoku tsunami and 2012 Haida Gwaii tsunami at Monterey Bay, CA, using an offshore record of each tsunami at DART station 46411.

Sulfur geochemistry and microbial sulfate reduction during low-temperature alteration of uplifted lower oceanic crust: Insights from ODP Hole 735B

USGS Publications Warehouse

Alford, Susan E.; Alt, Jeffrey C.; Shanks, Wayne C.

2011-01-01

Sulfide petrography plus whole rock contents and isotope ratios of sulfur were measured in a 1.5 km section of oceanic gabbros in order to understand the geochemistry of sulfur cycling during low-temperature seawater alteration of the lower oceanic crust, and to test whether microbial effects may be present. Most samples have low SO4/ΣS values (≤ 0.15), have retained igneous globules of pyrrhotite ± chalcopyrite ± pentlandite, and host secondary aggregates of pyrrhotite and pyrite laths in smectite ± iron-oxyhydroxide ± magnetite ± calcite pseudomorphs of olivine and clinopyroxene. Compared to fresh gabbro containing 100–1800 ppm sulfur our data indicate an overall addition of sulfide to the lower crust. Selection of samples altered only at temperatures ≤ 110 °C constrains microbial sulfate reduction as the only viable mechanism for the observed sulfide addition, which may have been enabled by the production of H2 from oxidation of associated olivine and pyroxene. The wide range in δ34Ssulfide values (− 1.5 to + 16.3‰) and variable additions of sulfide are explained by variable εsulfate-sulfide under open system pathways, with a possible progression into closed system pathways. Some samples underwent oxidation related to seawater penetration along permeable fault horizons and have lost sulfur, have high SO4/ΣS (≥ 0.46) and variable δ34Ssulfide (0.7 to 16.9‰). Negative δ34Ssulfate–δ34Ssulfide values for the majority of samples indicate kinetic isotope fractionation during oxidation of sulfide minerals. Depth trends in sulfide–sulfur contents and sulfide mineral assemblages indicate a late-stage downward penetration of seawater into the lower 1 km of Hole 735B. Our results show that under appropriate temperature conditions, a subsurface biosphere can persist in the lower oceanic crust and alter its geochemistry.

Sea level hazards: Altimetric monitoring of tsunamis and sea level rise

NASA Astrophysics Data System (ADS)

Hamlington, Benjamin Dillon

Whether on the short timescale of an impending tsunami or the much longer timescale of climate change-driven sea level rise, the threat stemming from rising and inundating ocean waters is a great concern to coastal populations. Timely and accurate observations of potentially dangerous changes in sea level are vital in determining the precautionary steps that need to be taken in order to protect coastal communities. While instruments from the past have provided in situ measurements of sea level at specific locations across the globe, satellites can be used to provide improved spatial and temporal sampling of the ocean in addition to producing more accurate measurements. Since 1993, satellite altimetry has provided accurate measurements of sea surface height (SSH) with near-global coverage. Not only have these measurements led to the first definitive estimates of global mean sea level rise, satellite altimetry observations have also been used to detect tsunami waves in the open ocean where wave amplitudes are relatively small, a vital step in providing early warning to those potentially affected by the impending tsunami. The use of satellite altimetry to monitor two specific sea level hazards is examined in this thesis. The first section will focus on the detection of tsunamis in the open ocean for the purpose of providing early warning to coastal inhabitants. The second section will focus on estimating secular trends using satellite altimetry data with the hope of improving our understanding of future sea level change. Results presented here will show the utility of satellite altimetry for sea level monitoring and will lay the foundation for further advancement in the detection of the two sea level hazards considered.

Carbon and Nutrient Dynamics and Fluxes in the Northwest European Continental Shelf Sea

NASA Astrophysics Data System (ADS)

Humphreys, M. P.; Moore, M. M.; Achterberg, E. P.; Griffiths, A.; Smilenova, A.; Chowdhury, M. Z. H.; Kivimae, C.; Hartman, S. E.; Hopkins, J.; Woodward, M. S.

2016-02-01

Despite covering only about 5 % of the Earth's ocean surface area, shallow marginal seas support 15-20 % of global primary productivity, and are the key interface between the land and the open ocean. They are therefore of critical importance to marine biogeochemical cycles, and may have a significant role in ocean uptake and storage of anthropogenic carbon dioxide (CO2). However, their behaviour is significantly more complex than that of the open ocean, because of the greater heterogeneity of the underlying physical, chemical and biological processes acting upon them. Detailed case-studies of individual regions are therefore essential in order to accurately evaluate their net global influence. The Northwest European continental shelf, in particular the Celtic Sea, was the target of extensive hydrographic sampling from March 2014 to September 2015, as part of the UK Shelf Seas Biogeochemistry research programme (UK-SSB). Here, we use the UK-SSB carbonate chemistry and macronutrient measurements to describe the seasonal biogeochemical cycle in the Celtic Sea. The 100-200 m deep water column proceeds from vertically well mixed in winter to a strongly stratified two-layer structure over spring-summer. The associated seasonal cycle in near-surface biological activity removes dissolved inorganic carbon (DIC) and nutrients, some of which are then exported into the deeper layer. Calculating total inventories of the biogeochemical variables throughout the seasonal cycle, we determine seasonal net CO2 uptake and investigate whether non-Redfieldian macronutrient uptake and remineralisation processes occur. Combining these results with estimated water exchange across the shelf edge further allows us to quantify the strength of the `shelf pump' sink for atmospheric (and anthropogenic) CO2.

Earth 2075 (CO2) - can Ocean-Amplified Carbon Capture (oacc) Impart Atmospheric CO2-SINKING Ability to CCS Fossil Energy?

NASA Astrophysics Data System (ADS)

Fry, R.; Routh, M.; Chaudhuri, S.; Fry, S.; Ison, M.; Hughes, S.; Komor, C.; Klabunde, K.; Sethi, V.; Collins, D.; Polkinghorn, W.; Wroobel, B.; Hughes, J.; Gower, G.; Shkolnik, J.

2017-12-01

Previous attempts to capture atmospheric CO2 by algal blooming were stalled by ocean viruses, zooplankton feeding, and/or bacterial decomposition of surface blooms, re-releasing captured CO2 instead of exporting it to seafloor. CCS fossil energy coupling could bypass algal bloom limits—enabling capture of 10 GtC/yr atmospheric CO2 by selective emiliania huxleyi (EHUX) blooming in mid-latitude open oceans, far from coastal waters and polar seas. This could enable a 500 GtC drawdown, 350 ppm restoration by 2050, 280 ppm CO2 by 2075, and ocean pH 8.2. White EHUX blooms could also reflect sunlight back into outer space and seed extra ocean cloud cover, via DMS release, to raise albedo 1.8%—restoring preindustrial temperature (ΔT = 0°C) by 2030. Open oceans would avoid post-bloom anoxia, exclusively a coastal water phenomenon. The EHUX calcification reaction initially sources CO2, but net sinking prevails in follow-up equilibration reactions. Heavier-than-water EHUX sink captured CO2 to the sea floor before surface decomposition occurs. Seeding EHUX high on their nonlinear growth curve could accelerate short-cycle secondary open-ocean blooming—overwhelming mid-latitude viruses, zooplankton, and competition from other algae. Mid-latitude "ocean deserts" exhibit low viral, zooplankton, and bacterial counts. Thermocline prevents nutrient upwelling that would otherwise promote competing algae. Adding nitrogen nutrient would foster exclusive EHUX blooming. Elevated EHUX seed levels could arise from sealed, pH-buffered, floating, seed-production bioreactors infused with 10% CO2 from carbon feedstock supplied by inland CCS fossil power plants capturing 90% of emissions as liquid CO2. Deep-water SPAR platforms extract natural gas from beneath the sea floor. On-platform Haber and pH processing could convert extracted CH4 to buffered NH4+ nutrient, enabling ≥0.7 GtC/yr of bioreactor seed production and 10 GtC/yr of amplified secondary open-ocean CO2 capture—making CCS fossil energy 1400% carbon negative.

Fish Productivity in Open-Ocean Gyre Systems in the Late Oligocene and Miocene

NASA Astrophysics Data System (ADS)

Cuevas, J. M.; Sibert, E. C.; Norris, R. D.

2015-12-01

Understanding how marine ecosystems respond to climate change is very important as we continue to warm the climate. Fish represent a critical protein source for a significant portion of the global population, and as such, an understanding of fish production and its interactions with climate change may help better prepare for the future. Ichthyoliths, fossil fish teeth and shark scales, are a novel fossil group which can be used as an indicator for fish productivity. Several important climate events occurred during the Miocene (7 to 23 Ma), including the Middle Miocene Climatic Optimum. Here we reconstruct fish production from across the Miocene from Pacific and Atlantic Ocean gyres. South Atlantic samples, from Deep Sea Drilling Program (DSDP) Site 522 spanning from 30 to 20 Ma, show fairly variable numbers in the Oligocene (ranging from 100 to 800 ich/cm2/yr), but stabilization in the Early Miocene (around 400 ich/cm2/yr), suggesting that the beginning of the Miocene brought consistent conditions for fish production. In the North Pacific, our record from Ocean Drilling Program (ODP) Site 886 shows a distinct crash in fish productivity at 11 Ma, from 3500 ich/cm2/yr to a steady decline around 100 ich/cm2/yr for the next million years. This crash is followed by a marked increase in the presence of diatoms and biogenous opal. This is somewhat surprising, since in modern oceanic systems, an increase in diatoms and other large-celled phytoplankton is associated with shorter, more efficient food chains and higher levels of fish. It is also interesting to note that denticles remain consistently low at both sites, indicating consistently low shark populations through this time period. Together, these results suggest that the Late Oligocene and Miocene was a time of variable fish production and provide a window into understanding of dynamic ecosystem changes through the Miocene in open-ocean gyre ecosystems.

Evaluating the performance of Sentinel-3 SRAL SAR Altimetry in the Coastal and Open Ocean, and developing improved retrieval methods - The ESA SCOOP Project.

NASA Astrophysics Data System (ADS)

Benveniste, J.; Cotton, D.; Moreau, T.; Varona, E.; Roca, M.; Cipollini, P.; Cancet, M.; Martin, F.; Fenoglio-Marc, L.; Naeije, M.; Fernandes, J.; Restano, M.; Ambrozio, A.

2016-12-01

The ESA Sentinel-3 satellite, launched in February 2016 as a part of the Copernicus programme, is the second satellite to operate a SAR mode altimeter. The Sentinel 3 Synthetic Aperture Radar Altimeter (SRAL) is based on the heritage from Cryosat-2, but this time complemented by a Microwave Radiometer (MWR) to provide a wet troposphere correction, and operating at Ku and C-Bands to provide an accurate along-track ionospheric correction. Together this instrument package, including both GPS and DORIS instruments for accurate positioning, allows accurate measurements of sea surface height over the ocean, as well as measurements of significant wave height and surface wind speed. SCOOP (SAR Altimetry Coastal & Open Ocean Performance) is a project funded under the ESA SEOM (Scientific Exploitation of Operational Missions) Programme Element, started in September 2015, to characterise the expected performance of Sentinel-3 SRAL SAR mode altimeter products, in the coastal zone and open-ocean, and then to develop and evaluate enhancements to the baseline processing scheme in terms of improvements to ocean measurements. There is also a work package to develop and evaluate an improved Wet Troposphere correction for Sentinel-3, based on the measurements from the on-board MWR, further enhanced mostly in the coastal and polar regions using third party data, and provide recommendations for use. At the end of the project recommendations for further developments and implementations will be provided through a scientific roadmap. In this presentation we provide an overview of the SCOOP project, highlighting the key deliverables and discussing the potential impact of the results in terms of the application of delay-Doppler (SAR) altimeter measurements over the open-ocean and coastal zone. We also present the initial results from the project, including: Key findings from a review of the current "state-of-the-art" for SAR altimetry, Specification of the initial "reference" delay-Doppler and echo modelling /retracking processing schemes, Evaluation of the initial Test Data Set in the Open Ocean and Coastal Zone Overview of modifications planned to the reference delay-Doppler and echo modelling/ re-tracking processing schemes.

Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton.

PubMed

von Dassow, Peter; John, Uwe; Ogata, Hiroyuki; Probert, Ian; Bendif, El Mahdi; Kegel, Jessica U; Audic, Stéphane; Wincker, Patrick; Da Silva, Corinne; Claverie, Jean-Michel; Doney, Scott; Glover, David M; Flores, Daniella Mella; Herrera, Yeritza; Lescot, Magali; Garet-Delmas, Marie-José; de Vargas, Colomban

2015-06-01

Emiliania huxleyi is the most abundant calcifying plankton in modern oceans with substantial intraspecific genome variability and a biphasic life cycle involving sexual alternation between calcified 2N and flagellated 1N cells. We show that high genome content variability in Emiliania relates to erosion of 1N-specific genes and loss of the ability to form flagellated cells. Analysis of 185 E. huxleyi strains isolated from world oceans suggests that loss of flagella occurred independently in lineages inhabiting oligotrophic open oceans over short evolutionary timescales. This environmentally linked physiogenomic change suggests life cycling is not advantageous in very large/diluted populations experiencing low biotic pressure and low ecological variability. Gene loss did not appear to reflect pressure for genome streamlining in oligotrophic oceans as previously observed in picoplankton. Life-cycle modifications might be common in plankton and cause major functional variability to be hidden from traditional taxonomic or molecular markers.

Exploring Metabolic Activities of Deeply Buried Microbial Communities in Oxic Sediments Underlying Oligotrophic Open Ocean Gyres

NASA Astrophysics Data System (ADS)

Ziebis, W.; Patel, A.; Krupke, A.; Ferdelman, T. G.

2012-12-01

The vast majority of scientific drilling expeditions have focused on continental margins where oxygen is depleted within the surface (1 m) layer of the sediment and buried organic carbon sustains anaerobic microbial communities. IODP expeditions 329 (South Pacific Gyre) and 336 (Mid-Atlantic Ridge - North Pond) took place in oligotrophic open ocean regions, which constitute 48% of the world ocean. These expeditions have revealed that unlike continental margins the seafloor underneath oligotrophic ocean gyres is oxic. Within the South Pacific Gyre (SPG) dissolved oxygen persists throughout the sediment cover and reaches the basement even at the sites with thickest sediment cover (62 and 75 mbsf). North Pond is a sedimented pond (< 300 m sediment cover) located on the flank of the Mid-Atlantic Ridge underlying the oligotrophic central Atlantic. Here, oxygen diffuses upward from the basaltic aquifer underlying the sediment package in addition to deep oxygen penetration from the overlying water. Oxygen is the main electron acceptor available for sub-seafloor microbial activity in these vast oligotrophic open ocean regions. Microbial cells are present and active in the organic poor sediments, albeit numbers are near or below the detection limit (<103 cm-3 sediment) in the extremely organic-poor sediment of the SPG (below 2 -15 m sediment depth, depending on the location). However, we have very limited knowledge on the microbial community compositions and metabolic activities. Even the dominance of bacteria or archaea remains largely elusive. It has been suggested that while archaea dominate in the anoxic sediments of continental margins bacteria might be more abundant in the oxic seafloor underlying oligotrophic ocean gyres where aerobic respiration prevails. Experiments were conducted with sediment samples from the SPG and North Pond to explore the pattern of microbial diversity and metabolic activity using a suite of radio and stable isotopes in combination with single cell analyses. Our goal was to track the uptake and turnover of metabolically important elements (C, N, P) and to compare metabolic activities (heterotrophy / autotrophy) between sites and with depth. Labeling of cells using fluorescent oligonucleotide probes (HISH and CARD-FISH) in combination with nanoSIMS has thus far revealed a clear dominance of bacteria in SPG sub-seafloor sediments, which showed a high uptake of nitrogen (ammonium). Current experiments using cell extractions and cell encapsulations followed by incubations with radiotracers will further reveal carbon turnover pathways of specific microorganisms.

Air-sea interaction regimes in the sub-Antarctic Southern Ocean and Antarctic marginal ice zone revealed by icebreaker measurements

NASA Astrophysics Data System (ADS)

Yu, Lisan; Jin, Xiangze; Schulz, Eric W.; Josey, Simon A.

2017-08-01

This study analyzed shipboard air-sea measurements acquired by the icebreaker Aurora Australis during its off-winter operation in December 2010 to May 2012. Mean conditions over 7 months (October-April) were compiled from a total of 22 ship tracks. The icebreaker traversed the water between Hobart, Tasmania, and the Antarctic continent, providing valuable in situ insight into two dynamically important, yet poorly sampled, regimes: the sub-Antarctic Southern Ocean and the Antarctic marginal ice zone (MIZ) in the Indian Ocean sector. The transition from the open water to the ice-covered surface creates sharp changes in albedo, surface roughness, and air temperature, leading to consequential effects on air-sea variables and fluxes. Major effort was made to estimate the air-sea fluxes in the MIZ using the bulk flux algorithms that are tuned specifically for the sea-ice effects, while computing the fluxes over the sub-Antarctic section using the COARE3.0 algorithm. The study evidenced strong sea-ice modulations on winds, with the southerly airflow showing deceleration (convergence) in the MIZ and acceleration (divergence) when moving away from the MIZ. Marked seasonal variations in heat exchanges between the atmosphere and the ice margin were noted. The monotonic increase in turbulent latent and sensible heat fluxes after summer turned the MIZ quickly into a heat loss regime, while at the same time the sub-Antarctic surface water continued to receive heat from the atmosphere. The drastic increase in turbulent heat loss in the MIZ contrasted sharply to the nonsignificant and seasonally invariant turbulent heat loss over the sub-Antarctic open water.