Science.gov

Sample records for open radioactive sources

  1. Dynamic radioactive particle source

    DOEpatents

    Moore, Murray E; Gauss, Adam Benjamin; Justus, Alan Lawrence

    2012-06-26

    A method and apparatus for providing a timed, synchronized dynamic alpha or beta particle source for testing the response of continuous air monitors (CAMs) for airborne alpha or beta emitters is provided. The method includes providing a radioactive source; placing the radioactive source inside the detection volume of a CAM; and introducing an alpha or beta-emitting isotope while the CAM is in a normal functioning mode.

  2. Detecting Illicit Radioactive Sources

    SciTech Connect

    McDonald, Joseph C.; Coursey, Bert; Carter, Michael

    2004-11-01

    Specialized instruments have been developed to detect the presence of illicit radioactive sources that may be used by terrorists in radiation dispersal devices, so-called ''dirty bombs'' or improvised nuclear devices. This article discusses developments in devices to detect and measure radiation.

  3. Radioactive source security: the cultural challenges.

    PubMed

    Englefield, Chris

    2015-04-01

    Radioactive source security is an essential part of radiation protection. Sources can be abandoned, lost or stolen. If they are stolen, they could be used to cause deliberate harm and the risks are varied and significant. There is a need for a global security protection system and enhanced capability to achieve this. The establishment of radioactive source security requires 'cultural exchanges'. These exchanges include collaboration between: radiation protection specialists and security specialists; the nuclear industry and users of radioactive sources; training providers and regulators/users. This collaboration will facilitate knowledge and experience exchange for the various stakeholder groups, beyond those already provided. This will promote best practice in both physical and information security and heighten security awareness generally. Only if all groups involved are prepared to open their minds to listen to and learn from, each other will a suitable global level of control be achieved.

  4. PORTABLE SOURCE OF RADIOACTIVITY

    DOEpatents

    Goertz, R.C.; Ferguson, K.R.; Rylander, E.W.; Safranski, L.M.

    1959-06-16

    A portable source for radiogiaphy or radiotherapy is described. It consists of a Tl/sup 170/ or Co/sup 60/ source mounted in a rotatable tungsten alloy plug. The plug rotates within a brass body to positions of safety or exposure. Provision is made for reloading and carrying the device safely. (T.R.H.)

  5. Enhanced Radioactive Material Source Security.

    PubMed

    Klinger, Joseph G

    2016-02-01

    Requirements for additional security measures for sealed radioactive sources have evolved since they were first implemented after the terrorist events of 11 September 2001. This paper will describe the sequence of those measures, commencing with the early orders issued by the U.S. Nuclear Regulatory Commission to the May 2013 adoption of 10 CFR Part 37, Physical Protections of Category 1 and Category 2 Quantities of Radioactive Material. Part 37 requirements will be discussed in detail, as the 37 NRC Agreement States, which regulate approximately 88% of the radioactive material licensees, will be required to enact by 19 March 2016. In addition to the Part 37 requirements, the paper will also highlight some of the other ongoing efforts of the U.S. Department of Energy's National Nuclear Security Administration's Global Threat Reduction Initiative and the Conference of Radiation Control Program Directors.

  6. Automatic Searching Radioactive Sources by Airborne Radioactive Survey Using Multicopter

    NASA Astrophysics Data System (ADS)

    Rim, H.; Eun, S. B.; Kim, K.; Park, S.; Jung, H. K.

    2015-12-01

    In order to prepare emergency situation lost a dangerous radioelement source in advance and to search a radioactive source automatically, we develop airborne radioelement survey system by multicopter. This multicopter radioelement survey system consists of a small portable customized BGO (Bismuth Germanate Oxide) detector, video recording part, wireless connecting part to ground pilot, GPS, and several equipments for automatic flight. This system is possible to search flight by preprogramed lines. This radioactive detecting system are tested to find intentional hidden source, The performance of detecting a source is well proved with very low flight altitude in spite of depending on the magnitude of radioelement sources. The advantage of multicopter system, one of UAV (Unmanned Aerial Vehicle), is to avoid the potential of close access to a dangerous radioactive source by using fully automatic searching capability. In this paper, we introduce our multicopter system for detecting radioactive source and synthetic case history for demonstrating this system.

  7. Low-level radioactive waste from commercial nuclear reactors. Volume 3. Bibliographic abstracts of significant source documents. Part 1. Open-literature abstracts for low-level radioactive waste

    SciTech Connect

    Bowers, M.K.; Rodgers, B.R.; Jolley, R.L.

    1986-05-01

    The overall task of this program was to provide an assessment of currently available technology for treating commercial low-level radioactive waste (LLRW), to initiate development of a methodology for choosing one technology for a given application, and to identify research needed to improve current treatment techniques and decision methodology. The resulting report is issued in four volumes. Volume 3 of this series is a collection of abstracts of most of the reference documents used for this study. Because of the large volume of literature, the abstracts have been printed in two separate parts. Volume 3, part 1 presents abstracts of the open literature relating to LLRW treatment methodologies. Some of these references pertain to treatment processes for hazardous wastes that may also be applicable to LLRW management. All abstracts have been limited to 21 lines (for brevity), but each abstract contains sufficient information to enable the reader to determine the potential usefulness of the source document and to locate each article. The abstracts are arranged alphabetically by author or organization, and indexed by keyword.

  8. RADIOACTIVE CONCENTRATOR AND RADIATION SOURCE

    DOEpatents

    Hatch, L.P.

    1959-12-29

    A method is presented for forming a permeable ion exchange bed using Montmorillonite clay to absorb and adsorb radioactive ions from liquid radioactive wastes. A paste is formed of clay, water, and a material that fomns with clay a stable aggregate in the presence of water. The mixture is extruded into a volume of water to form clay rods. The rods may then be used to remove radioactive cations from liquid waste solutions. After use, the rods are removed from the solution and heated to a temperature of 750 to 1000 deg C to fix the ratioactive cations in the clay.

  9. DEPO-related to Radioactive Sources.

    SciTech Connect

    Miller, James Christopher

    2016-02-24

    Design and Evaluation Process Outline (DEPO) is discussed as it pertains to protection of radioactive sources. The bulk of the report describes features of various kinds of detection systems, and follows this with systems for entry control and personnel identification.

  10. Open Source Vision

    ERIC Educational Resources Information Center

    Villano, Matt

    2006-01-01

    Increasingly, colleges and universities are turning to open source as a way to meet their technology infrastructure and application needs. Open source has changed life for visionary CIOs and their campus communities nationwide. The author discusses what these technologists see as the benefits--and the considerations.

  11. Creating Open Source Conversation

    ERIC Educational Resources Information Center

    Sheehan, Kate

    2009-01-01

    Darien Library, where the author serves as head of knowledge and learning services, launched a new website on September 1, 2008. The website is built with Drupal, an open source content management system (CMS). In this article, the author describes how she and her colleagues overhauled the library's website to provide an open source content…

  12. Open Source Molecular Modeling

    PubMed Central

    Pirhadi, Somayeh; Sunseri, Jocelyn; Koes, David Ryan

    2016-01-01

    The success of molecular modeling and computational chemistry efforts are, by definition, dependent on quality software applications. Open source software development provides many advantages to users of modeling applications, not the least of which is that the software is free and completely extendable. In this review we categorize, enumerate, and describe available open source software packages for molecular modeling and computational chemistry. PMID:27631126

  13. Creating Open Source Conversation

    ERIC Educational Resources Information Center

    Sheehan, Kate

    2009-01-01

    Darien Library, where the author serves as head of knowledge and learning services, launched a new website on September 1, 2008. The website is built with Drupal, an open source content management system (CMS). In this article, the author describes how she and her colleagues overhauled the library's website to provide an open source content…

  14. Open Source Vision

    ERIC Educational Resources Information Center

    Villano, Matt

    2006-01-01

    Increasingly, colleges and universities are turning to open source as a way to meet their technology infrastructure and application needs. Open source has changed life for visionary CIOs and their campus communities nationwide. The author discusses what these technologists see as the benefits--and the considerations.

  15. 10 CFR 835.1201 - Sealed radioactive source control.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 10 Energy 4 2011-01-01 2011-01-01 false Sealed radioactive source control. 835.1201 Section 835.1201 Energy DEPARTMENT OF ENERGY OCCUPATIONAL RADIATION PROTECTION Sealed Radioactive Source Control § 835.1201 Sealed radioactive source control. Sealed radioactive sources shall be used, handled, and...

  16. 10 CFR 835.1201 - Sealed radioactive source control.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 10 Energy 4 2010-01-01 2010-01-01 false Sealed radioactive source control. 835.1201 Section 835.1201 Energy DEPARTMENT OF ENERGY OCCUPATIONAL RADIATION PROTECTION Sealed Radioactive Source Control § 835.1201 Sealed radioactive source control. Sealed radioactive sources shall be used, handled, and...

  17. 10 CFR 835.1202 - Accountable sealed radioactive sources.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 10 Energy 4 2010-01-01 2010-01-01 false Accountable sealed radioactive sources. 835.1202 Section 835.1202 Energy DEPARTMENT OF ENERGY OCCUPATIONAL RADIATION PROTECTION Sealed Radioactive Source Control § 835.1202 Accountable sealed radioactive sources. (a) Each accountable sealed radioactive source...

  18. 10 CFR 835.1202 - Accountable sealed radioactive sources.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 10 Energy 4 2011-01-01 2011-01-01 false Accountable sealed radioactive sources. 835.1202 Section 835.1202 Energy DEPARTMENT OF ENERGY OCCUPATIONAL RADIATION PROTECTION Sealed Radioactive Source Control § 835.1202 Accountable sealed radioactive sources. (a) Each accountable sealed radioactive source...

  19. 10 CFR 835.1201 - Sealed radioactive source control.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 10 Energy 4 2013-01-01 2013-01-01 false Sealed radioactive source control. 835.1201 Section 835.1201 Energy DEPARTMENT OF ENERGY OCCUPATIONAL RADIATION PROTECTION Sealed Radioactive Source Control § 835.1201 Sealed radioactive source control. Sealed radioactive sources shall be used, handled, and...

  20. 10 CFR 835.1201 - Sealed radioactive source control.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 10 Energy 4 2014-01-01 2014-01-01 false Sealed radioactive source control. 835.1201 Section 835.1201 Energy DEPARTMENT OF ENERGY OCCUPATIONAL RADIATION PROTECTION Sealed Radioactive Source Control § 835.1201 Sealed radioactive source control. Sealed radioactive sources shall be used, handled, and...

  1. 10 CFR 835.1202 - Accountable sealed radioactive sources.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 10 Energy 4 2014-01-01 2014-01-01 false Accountable sealed radioactive sources. 835.1202 Section 835.1202 Energy DEPARTMENT OF ENERGY OCCUPATIONAL RADIATION PROTECTION Sealed Radioactive Source Control § 835.1202 Accountable sealed radioactive sources. (a) Each accountable sealed radioactive source...

  2. 10 CFR 835.1201 - Sealed radioactive source control.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 10 Energy 4 2012-01-01 2012-01-01 false Sealed radioactive source control. 835.1201 Section 835.1201 Energy DEPARTMENT OF ENERGY OCCUPATIONAL RADIATION PROTECTION Sealed Radioactive Source Control § 835.1201 Sealed radioactive source control. Sealed radioactive sources shall be used, handled,...

  3. Radiation Safety of Sealed Radioactive Sources

    SciTech Connect

    Pryor, Kathryn H.

    2015-01-01

    Sealed radioactive sources are used in a wide variety of occupational settings and under differing regulatory/licensing structures. The definition of a sealed radioactive source varies between US regulatory authorities and standard-setting organizations. Potential problems with sealed sources cover a range of risks and impacts. The loss of control of high activity sealed sources can result in very high or even fatal doses to members of the public who come in contact with them. Sources that are not adequately sealed, and that fail, can cause spread of contamination and potential intake of radioactive material. There is also the possibility that sealed sources may be (or threatened to be) used for terrorist purposes and disruptive opportunities. Until fairly recently, generally-licensed sealed sources and devices received little, if any, regulatory oversight, and were often forgotten, lost or unaccounted for. Nonetheless, generally licensed devices can contain fairly significant quantities of radioactive material and there is some potential for exposure if a device is treated in a way that it was never designed. Industrial radiographers use and handle high activity and/or high-dose rate sealed sources in the field with a high degree of independence and minimal regulatory oversight. Failure to follow operational procedures and properly handle radiography sources can and has resulted in serious injuries and death. Industrial radiographers have experienced a disproportionately large fraction of incidents that result in unintended exposure to radiation. Sources do not have to contain significant quantities of radioactive material to cause problems in the event of their failure. A loss of integrity can cause the spread of contamination and potential exposure to workers and members of the public. The NCRP has previously provided recommendations on select aspects of sealed source programs. Future efforts to provide recommendations for sealed source programs are discussed.

  4. Radiation safety of sealed radioactive sources.

    PubMed

    Pryor, Kathryn H

    2015-02-01

    Sealed radioactive sources are used in a wide variety of occupational settings and under differing regulatory/licensing structures. The definition of a sealed radioactive source varies between U.S. regulatory authorities and standard-setting organizations. Potential problems with sealed sources cover a range of risks and impacts. The loss of control of high activity sealed sources can result in very high or even fatal doses to members of the public who come in contact with them. Sources that are not adequately sealed and that fail can cause spread of contamination and potential intake of radioactive material. There is also the possibility that sealed sources may be (or threaten to be) used for terrorist purposes and disruptive opportunities. Until fairly recently, generally licensed sealed sources and devices received little, if any, regulatory oversight and were often forgotten, lost or unaccounted for. Nonetheless, generally licensed devices can contain fairly significant quantities of radioactive material, and there is some potential for exposure if a device is treated in a way for which it was never designed. Industrial radiographers use and handle high activity and/or high dose-rate sealed sources in the field with a high degree of independence and minimal regulatory oversight. Failure to follow operational procedures and properly handle radiography sources can and has resulted in serious injuries and death. Industrial radiographers have experienced a disproportionately large fraction of incidents that have resulted in unintended exposure to radiation. Sources do not have to contain significant quantities of radioactive material to cause problems in the event of their failure. A loss of integrity can cause the spread of contamination and potential exposure to workers and members of the public. The National Council on Radiation Protection and Measurements has previously provided recommendations on select aspects of sealed source programs. Future efforts to

  5. Neutron imaging of radioactive sources

    NASA Astrophysics Data System (ADS)

    Hameed, F.; Karimzadeh, S.; Zawisky, M.

    2008-08-01

    Isotopic neutron sources have been available for more than six decades. At the Atomic Institute in Vienna, operating a 250 kW TRIGA reactor, different neutron sources are in use for instrument calibration and fast neutron applications but we have only little information about their construction and densities. The knowledge of source design is essential for a complete MCNP5 modeling of the experiments. Neutron radiography (NR) and neutron tomography (NT) are the best choices for the non-destructive inspection of the source geometry and homogeneity. From the transmission analysis we gain information about the shielding components and the densities of the radio-isotopes in the cores. Three neutron sources, based on (alpha, n) reaction, have been investigated, two 239PuBe sources and one 241AmBe source. In the NR images the internal structure was clearly revealed using high-resolving scintillation and imaging plate detectors. In one source tablet a crack was detected which causes asymmetric neutron emission. The tomography inspection of strong absorbing materials is more challenging due to the low beam intensity of 1.3x105 n/cm2s at our NT instrument, and due to the beam hardening effect which requires an extension of reconstruction software. The tomographic inspection of a PuBe neutron source and appropriate measures for background and beam hardening correction are presented.

  6. A Sensitive Cloud Chamber without Radioactive Sources

    ERIC Educational Resources Information Center

    Zeze, Syoji; Itoh, Akio; Oyama, Ayu; Takahashi, Haruka

    2012-01-01

    We present a sensitive diffusion cloud chamber which does not require any radioactive sources. A major difference from commonly used chambers is the use of a heat sink as its bottom plate. The result of a performance test of the chamber is given. (Contains 8 figures.)

  7. A Sensitive Cloud Chamber without Radioactive Sources

    ERIC Educational Resources Information Center

    Zeze, Syoji; Itoh, Akio; Oyama, Ayu; Takahashi, Haruka

    2012-01-01

    We present a sensitive diffusion cloud chamber which does not require any radioactive sources. A major difference from commonly used chambers is the use of a heat sink as its bottom plate. The result of a performance test of the chamber is given. (Contains 8 figures.)

  8. Open source molecular modeling.

    PubMed

    Pirhadi, Somayeh; Sunseri, Jocelyn; Koes, David Ryan

    2016-09-01

    The success of molecular modeling and computational chemistry efforts are, by definition, dependent on quality software applications. Open source software development provides many advantages to users of modeling applications, not the least of which is that the software is free and completely extendable. In this review we categorize, enumerate, and describe available open source software packages for molecular modeling and computational chemistry. An updated online version of this catalog can be found at https://opensourcemolecularmodeling.github.io. Copyright © 2016 The Author(s). Published by Elsevier Inc. All rights reserved.

  9. Environmental Assessment Radioactive Source Recovery Program

    SciTech Connect

    1995-12-20

    In a response to potential risks to public health and safety, the U.S. Department of Energy (DOE) is evaluating the recovery of sealed neutron sources under the Radioactive Source Recovery Program (RSRP). This proposed program would enhance the DOE`s and the U.S. Nuclear Regulatory Commission`s (NRC`s) joint capabilities in the safe management of commercially held radioactive source materials. Currently there are no federal or commercial options for the recovery, storage, or disposal of sealed neutron sources. This Environmental Assessment (EA) analyzes the potential environmental impacts that would be expected to occur if the DOE were to implement a program for the receipt and recovery at the Los Alamos National Laboratory (LANL), Los Alamos, New Mexico, of unwanted and excess plutonium-beryllium ({sup 238}Pu-Be) and americium-beryllium ({sup 241}Am-Be) sealed neutron sources. About 1 kg (2.2 lb) plutonium and 3 kg (6.6 lb) americium would be recovered over a 15-year project. Personnel at LANL would receive neutron sources from companies, universities, source brokers, and government agencies across the country. These neutron sources would be temporarily stored in floor holes at the CMR Hot Cell Facility. Recovery reduces the neutron emissions from the source material and refers to a process by which: (1) the stainless steel cladding is removed from the neutron source material, (2) the mixture of the radioactive material (Pu-238 or Am-241) and beryllium that constitutes the neutron source material is chemically separated (recovered), and (3) the recovered Pu-238 or Am-241 is converted to an oxide form ({sup 238}PuO{sub 2} or {sup 241}AmO{sub 2}). The proposed action would include placing the {sup 238}PuO{sub 2} or {sup 241}AmO{sub 2} in interim storage in a special nuclear material vault at the LANL Plutonium Facility.

  10. Evaluating Open Source Portals

    ERIC Educational Resources Information Center

    Goh, Dion; Luyt, Brendan; Chua, Alton; Yee, See-Yong; Poh, Kia-Ngoh; Ng, How-Yeu

    2008-01-01

    Portals have become indispensable for organizations of all types trying to establish themselves on the Web. Unfortunately, there have only been a few evaluative studies of portal software and even fewer of open source portal software. This study aims to add to the available literature in this important area by proposing and testing a checklist for…

  11. Open Source in Education

    ERIC Educational Resources Information Center

    Lakhan, Shaheen E.; Jhunjhunwala, Kavita

    2008-01-01

    Educational institutions have rushed to put their academic resources and services online, beginning the global community onto a common platform and awakening the interest of investors. Despite continuing technical challenges, online education shows great promise. Open source software offers one approach to addressing the technical problems in…

  12. Open-Source Colorimeter

    PubMed Central

    Anzalone, Gerald C.; Glover, Alexandra G.; Pearce, Joshua M.

    2013-01-01

    The high cost of what have historically been sophisticated research-related sensors and tools has limited their adoption to a relatively small group of well-funded researchers. This paper provides a methodology for applying an open-source approach to design and development of a colorimeter. A 3-D printable, open-source colorimeter utilizing only open-source hardware and software solutions and readily available discrete components is discussed and its performance compared to a commercial portable colorimeter. Performance is evaluated with commercial vials prepared for the closed reflux chemical oxygen demand (COD) method. This approach reduced the cost of reliable closed reflux COD by two orders of magnitude making it an economic alternative for the vast majority of potential users. The open-source colorimeter demonstrated good reproducibility and serves as a platform for further development and derivation of the design for other, similar purposes such as nephelometry. This approach promises unprecedented access to sophisticated instrumentation based on low-cost sensors by those most in need of it, under-developed and developing world laboratories. PMID:23604032

  13. Evaluating Open Source Portals

    ERIC Educational Resources Information Center

    Goh, Dion; Luyt, Brendan; Chua, Alton; Yee, See-Yong; Poh, Kia-Ngoh; Ng, How-Yeu

    2008-01-01

    Portals have become indispensable for organizations of all types trying to establish themselves on the Web. Unfortunately, there have only been a few evaluative studies of portal software and even fewer of open source portal software. This study aims to add to the available literature in this important area by proposing and testing a checklist for…

  14. Open Source in Education

    ERIC Educational Resources Information Center

    Lakhan, Shaheen E.; Jhunjhunwala, Kavita

    2008-01-01

    Educational institutions have rushed to put their academic resources and services online, beginning the global community onto a common platform and awakening the interest of investors. Despite continuing technical challenges, online education shows great promise. Open source software offers one approach to addressing the technical problems in…

  15. Open source posturography.

    PubMed

    Rey-Martinez, Jorge; Pérez-Fernández, Nicolás

    2016-12-01

    The proposed validation goal of 0.9 in intra-class correlation coefficient was reached with the results of this study. With the obtained results we consider that the developed software (RombergLab) is a validated balance assessment software. The reliability of this software is dependent of the used force platform technical specifications. Develop and validate a posturography software and share its source code in open source terms. Prospective non-randomized validation study: 20 consecutive adults underwent two balance assessment tests, six condition posturography was performed using a clinical approved software and force platform and the same conditions were measured using the new developed open source software using a low cost force platform. Intra-class correlation index of the sway area obtained from the center of pressure variations in both devices for the six conditions was the main variable used for validation. Excellent concordance between RombergLab and clinical approved force platform was obtained (intra-class correlation coefficient =0.94). A Bland and Altman graphic concordance plot was also obtained. The source code used to develop RombergLab was published in open source terms.

  16. Open Source, Openness, and Higher Education

    ERIC Educational Resources Information Center

    Wiley, David

    2006-01-01

    In this article David Wiley provides an overview of how the general expansion of open source software has affected the world of education in particular. In doing so, Wiley not only addresses the development of open source software applications for teachers and administrators, he also discusses how the fundamental philosophy of the open source…

  17. Open Source, Openness, and Higher Education

    ERIC Educational Resources Information Center

    Wiley, David

    2006-01-01

    In this article David Wiley provides an overview of how the general expansion of open source software has affected the world of education in particular. In doing so, Wiley not only addresses the development of open source software applications for teachers and administrators, he also discusses how the fundamental philosophy of the open source…

  18. Open Source Software Development

    DTIC Science & Technology

    2011-01-01

    Agency’s XMM-Newton Observatory, the Sloan Digital Sky Survey, and others. These are three highly visible astrophysics research projects whose...In scientific fields like astrophysics that critically depend on software, open source is considered an essential precondition for research to...space are made, this in turn often leads to modification, extension, and new versions of the astronomical software in use that enable astrophysical

  19. 10 CFR 835.1202 - Accountable sealed radioactive sources.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 10 Energy 4 2012-01-01 2012-01-01 false Accountable sealed radioactive sources. 835.1202 Section 835.1202 Energy DEPARTMENT OF ENERGY OCCUPATIONAL RADIATION PROTECTION Sealed Radioactive Source... human entry or otherwise inaccessible. (e) An accountable sealed radioactive source found to be...

  20. 10 CFR 835.1202 - Accountable sealed radioactive sources.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 10 Energy 4 2013-01-01 2013-01-01 false Accountable sealed radioactive sources. 835.1202 Section 835.1202 Energy DEPARTMENT OF ENERGY OCCUPATIONAL RADIATION PROTECTION Sealed Radioactive Source... human entry or otherwise inaccessible. (e) An accountable sealed radioactive source found to be...

  1. Open-Source GIS

    SciTech Connect

    Vatsavai, Raju; Burk, Thomas E; Lime, Steve

    2012-01-01

    The components making up an Open Source GIS are explained in this chapter. A map server (Sect. 30.1) can broadly be defined as a software platform for dynamically generating spatially referenced digital map products. The University of Minnesota MapServer (UMN Map Server) is one such system. Its basic features are visualization, overlay, and query. Section 30.2 names and explains many of the geospatial open source libraries, such as GDAL and OGR. The other libraries are FDO, JTS, GEOS, JCS, MetaCRS, and GPSBabel. The application examples include derived GIS-software and data format conversions. Quantum GIS, its origin and its applications explained in detail in Sect. 30.3. The features include a rich GUI, attribute tables, vector symbols, labeling, editing functions, projections, georeferencing, GPS support, analysis, and Web Map Server functionality. Future developments will address mobile applications, 3-D, and multithreading. The origins of PostgreSQL are outlined and PostGIS discussed in detail in Sect. 30.4. It extends PostgreSQL by implementing the Simple Feature standard. Section 30.5 details the most important open source licenses such as the GPL, the LGPL, the MIT License, and the BSD License, as well as the role of the Creative Commons.

  2. Particle beam generator using a radioactive source

    DOEpatents

    Underwood, D.G.

    1993-03-30

    The apparatus of the present invention selects from particles emitted by a radioactive source those particles having momentum within a desired range and focuses the selected particles in a beam having at least one narrow cross-dimension, and at the same time attenuates potentially disruptive gamma rays and low energy particles. Two major components of the present invention are an achromatic bending and focusing system, which includes sector magnets and quadrupole, and a quadrupole doublet final focus system. Permanent magnets utilized in the apparatus are constructed of a ceramic (ferrite) material which is inexpensive and easily machined.

  3. Particle beam generator using a radioactive source

    DOEpatents

    Underwood, David G.

    1993-01-01

    The apparatus of the present invention selects from particles emitted by a radioactive source those particles having momentum within a desired range and focuses the selected particles in a beam having at least one narrow cross-dimension, and at the same time attenuates potentially disruptive gamma rays and low energy particles. Two major components of the present invention are an achromatic bending and focusing system, which includes sector magnets and quadrupole, and a quadrupole doublet final focus system. Permanent magnets utilized in the apparatus are constructed of a ceramic (ferrite) material which is inexpensive and easily machined.

  4. Ion sources and targets for radioactive beams

    SciTech Connect

    Schiffer, J.P.; Back, B.B.; Ahmad, I.

    1995-08-01

    A high-intensity ISOL-type radioactive beam facility depends critically on the performance of the target/ion source system. We developed a concept for producing high-intensity secondary beams of fission fragments, such as {sup 132}Sn, using a two-part target and ion source combination. The idea involves stopping a 1000-kW beam of 200-MeV deuterons in a target of Be or U to produce a secondary beam of neutrons. Just behind the neutron production target is a second target, typically a porous form of UC, coupled to an ISOL-type ion source. In December 1994, we tested this concept with 200-MeV deuterons at low intensity in an experiment at the NSCL. The yields of characteristic gamma rays were measured and confirmed our predictions.

  5. How Is Open Source Special?

    ERIC Educational Resources Information Center

    Kapor, Mitchell

    2005-01-01

    Open source software projects involve the production of goods, but in software projects, the "goods" consist of information. The open source model is an alternative to the conventional centralized, command-and-control way in which things are usually made. In contrast, open source projects are genuinely decentralized and transparent. Transparent…

  6. Ion source for radioactive isotopes - IRIS ECR

    SciTech Connect

    Burke, J.T.; Freedman, S.J.; Lyneis, C.M.; Wutte, D.

    2001-01-01

    A compact electron cyclotron resonance ion source for radioactive isotopes (IRIS ECR) has been developed for the {sup 14}O experiment at the 88-Inch Cyclotron. The {sup 14}O experiment is a joint effort between the Nuclear Science Division's Weak Interaction Group and the 88-Inch Cyclotron ECR ion source group. The initial goal of the experimentalists is to measure {sup 14}O half-life and the shape of the beta decay spectrum. The 70 second half-life of {sup 14}O requires producing the isotope on-line at the 88-Inch Cyclotron. The {sup 14}O is generated in the form of {sup 12}C{sup 14}O in a high temperature carbon aerogel target using a 20 MeV {sup 3}He{sup +} beam from the LBNL 88-Inch Cyclotron via the reaction {sup 12}C({sup 3}He,n){sup 14}O. The {sup 14}O atoms are then separated from the other radioactive isotopes produced in the target and then implanted into a thin foil. The implanted target serves to minimize the radiation background and maximize the signal in the beta spectrometer by concentrating the{sup 14}O into a 5mm diameter spot. An 8 meter long stainless steel transfer line connects the target chamber to the IRIS ECR through a turbo molecular pump. The gas coming from the turbo pump is fed into the ion source and ionized, extracted at energies of 20 to 30 keV and mass separated by an analyzing magnet. The ion source started operation in spring 1999 and achieved a beam intensity of 3 x 10{sup 5} {sup 14}O{sup +} ions/second. Extensive developments on the production target were made to increase extraction efficiency of the {sup 14}O. A liquid nitrogen trap was installed between the ECR and the turbo pump to minimize the gas load to the ion source. An improved support gas injection system was installed so that multiple support gases can be introduced. A bias disk is used to stabilize the plasma. A quartz liner in the plasma chamber is used to reduce the hold-up time for oxygen and increase the overall ionization efficiency. The extraction system was

  7. A radioactive metal processing industry perspective source.

    PubMed

    Johnson, A

    2006-11-01

    The current U.S. economic environment for the disposition of radioactive waste, including very-low-activity metals, is currently experiencing relatively low radioactive disposal costs and readily available disposal space. Despite the recent market increase in demand for recycled scrap metal commodities, there is still little change in the behavior of the nuclear industry (including radioactive waste processors and radioactive scrap metal recyclers) to pursue the recycling of potentially contaminated scrap metal. The relatively low cost of traditional radioactive waste disposal combined with the perceived risks associated with recycling of previously contaminated metals means that most U.S. radioactive facility managers and stakeholders will elect not to recycle. Current technology exists and precedence has been set for prescreening (by means of bulk radioactive assay techniques) scrap metal that is not contaminated and diverting it to industrial landfills for disposal. Other processes also allow some radiologically contaminated metals to be melted and recast into products with low, but acceptable, activity levels for restricted use in the nuclear industry. A new concept is being considered that would create a centralized licensed facility for the process and disposition of "very-low-activity" metals for "directed first use." The advantages to this type of approach would include a standardized method for licensing the clearance process.

  8. Management of Disused Radioactive Sealed Sources in Egypt - 13512

    SciTech Connect

    Mohamed, Y.T.; Hasan, M.A.; Lasheen, Y.F.

    2013-07-01

    The future safe development of nuclear energy and progressive increasing use of sealed sources in medicine, research, industry and other fields in Egypt depends on the safe and secure management of disused radioactive sealed sources. In the past years have determined the necessity to formulate and apply the integrated management program for radioactive sealed sources to assure harmless and ecological rational management of disused sealed sources in Egypt. The waste management system in Egypt comprises operational and regulatory capabilities. Both of these activities are performed under legislations. The Hot Laboratories and Waste Management Center HLWMC, is considered as a centralized radioactive waste management facility in Egypt by law 7/2010. (authors)

  9. 10 CFR Appendix E to Part 835 - Values for Establishing Sealed Radioactive Source Accountability and Radioactive Material Posting...

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 10 Energy 4 2011-01-01 2011-01-01 false Values for Establishing Sealed Radioactive Source Accountability and Radioactive Material Posting and Labeling Requirements E Appendix E to Part 835 Energy... Establishing Sealed Radioactive Source Accountability and Radioactive Material Posting and Labeling...

  10. Obtaining and Investigating Unconventional Sources of Radioactivity

    ERIC Educational Resources Information Center

    Lapp, David R.

    2010-01-01

    This paper provides examples of naturally radioactive items that are likely to be found in most communities. Additionally, there is information provided on how to acquire many of these items inexpensively. I have found that the presence of these materials in the classroom is not only useful for teaching about nuclear radiation and debunking the…

  11. Obtaining and Investigating Unconventional Sources of Radioactivity

    ERIC Educational Resources Information Center

    Lapp, David R.

    2010-01-01

    This paper provides examples of naturally radioactive items that are likely to be found in most communities. Additionally, there is information provided on how to acquire many of these items inexpensively. I have found that the presence of these materials in the classroom is not only useful for teaching about nuclear radiation and debunking the…

  12. Radioactive target and source development at Argonne National Laboratory

    SciTech Connect

    Greene, J.P.; Ahmad, I.; Thomas, G.E.

    1992-10-01

    An increased demand for low-level radioactive targets has created the need for a laboratory dedicated to the production of these foils. A description is given of the radioactive target produced as well as source development work being performed at the Physics Division target facility of Argonne National Laboratory (ANL). Highlights include equipment used and the techniques employed. In addition, some examples of recent source preparation are given as well as work currently in progress.

  13. Radioactive target and source development at Argonne National Laboratory

    SciTech Connect

    Greene, J.P.; Ahmad, I.; Thomas, G.E.

    1992-01-01

    An increased demand for low-level radioactive targets has created the need for a laboratory dedicated to the production of these foils. A description is given of the radioactive target produced as well as source development work being performed at the Physics Division target facility of Argonne National Laboratory (ANL). Highlights include equipment used and the techniques employed. In addition, some examples of recent source preparation are given as well as work currently in progress.

  14. An Open Source Simulation System

    NASA Technical Reports Server (NTRS)

    Slack, Thomas

    2005-01-01

    An investigation into the current state of the art of open source real time programming practices. This document includes what technologies are available, how easy is it to obtain, configure, and use them, and some performance measures done on the different systems. A matrix of vendors and their products is included as part of this investigation, but this is not an exhaustive list, and represents only a snapshot of time in a field that is changing rapidly. Specifically, there are three approaches investigated: 1. Completely open source on generic hardware, downloaded from the net. 2. Open source packaged by a vender and provided as free evaluation copy. 3. Proprietary hardware with pre-loaded proprietary source available software provided by the vender as for our evaluation.

  15. Radioactivity as a significant energy source in prebiotic synthesis.

    PubMed

    Garzón, L; Garzón, M L

    2001-01-01

    Radioactivity in the continental crust (due mainly to the isotopes 238U, 235U, 232Th and 40K), as a energy source for chemical evolution in the early Archean (between 3.5 and approximately 4 Ga bp), is reviewed. The most important radioactive source in the continental crust is due to the production and accumulation of radioactive gases within the crust voids (porosity). The study of such mechanism has allowed us to reach a deeper understanding about the nature of the radioactive source and to describe its behavior, particularly with regard to prebiotic chemical evolution. An effective total energy of 3 x 10(18) Ja-1 has been obtained for a depth of 1 km, 4 Ga ago. If a depth of 30 km is taken, the obtained value is almost equal to the UV solar energy radiation (lambda < 150 nm). Within the voids the radioactive source of the continental crust played a relevant role in prebiotic synthesis. In uranium deposits of the same age, the role of radioactivity must have been even more relevant in favoring chemical evolution.

  16. Radioactive heat sources in the lunar interior.

    NASA Technical Reports Server (NTRS)

    Hays, J. F.

    1972-01-01

    Published models for the moon's thermal history typically imply present day central temperatures far too high to be consistent with the recently proposed lunar temperature profile of Sonett et al. (1971). Furthermore, chemical data on Apollo samples show that the moon is depleted relative to chondrites in volatile elements, and possibly enriched relative to chondrites in refractory elements. Additional thermal models have therefore been investigated in order to set upper limits on lunar radioactivity consistent with the proposed temperature distribution. For an initially cold, uniform moon, devoid of potassium, a maximum uranium content of 23 parts per billion is inferred.

  17. Method for fabricating thin californium-containing radioactive source wires

    DOEpatents

    Gross, Ian G; Pierce, Larry A

    2006-08-22

    A method for reducing the cross-sectional diameter of a radioactive californium-containing cermet wire while simultaneously improving the wire diameter to a more nearly circular cross section. A collet fixture is used to reduce the wire diameter by controlled pressurization pulses while simultaneously improving the wire cross-sectional diameter. The method is especially suitable for use in hot cells for the production of optimized cermet brachytherapy sources that contain large amounts of radioactive californium-252.

  18. THE OPEN SOURCING OF EPANET

    EPA Science Inventory

    A proposal was made at the 2009 EWRI Congress in Kansas City, MO to establish an Open Source Project (OSP) for the widely used EPANET pipe network analysis program. This would be an ongoing collaborative effort among a group of geographically dispersed advisors and developers, wo...

  19. THE OPEN SOURCING OF EPANET

    EPA Science Inventory

    A proposal was made at the 2009 EWRI Congress in Kansas City, MO to establish an Open Source Project (OSP) for the widely used EPANET pipe network analysis program. This would be an ongoing collaborative effort among a group of geographically dispersed advisors and developers, wo...

  20. Study of two different radioactive sources for prostate brachytherapy treatment

    SciTech Connect

    Pereira Neves, Lucio; Perini, Ana Paula; Souza Santos, William de; Caldas, Linda V.E.

    2015-07-01

    In this study we evaluated two radioactive sources for brachytherapy treatments. Our main goal was to quantify the absorbed doses on organs and tissues of an adult male patient, submitted to a brachytherapy treatment with two radioactive sources. We evaluated a {sup 192}Ir and a {sup 125}I radioactive sources. The {sup 192}Ir radioactive source is a cylinder with 0.09 cm in diameter and 0.415 cm long. The {sup 125}I radioactive source is also a cylinder, with 0.08 cm in diameter and 0.45 cm long. To evaluate the absorbed dose distribution on the prostate, and other organs and tissues of an adult man, a male virtual anthropomorphic phantom MASH, coupled in the radiation transport code MCNPX 2.7.0, was employed.We simulated 75, 90 and 102 radioactive sources of {sup 125}I and one of {sup 192}Ir, inside the prostate, as normally used in these treatments, and each treatment was simulated separately. As this phantom was developed in a supine position, the displacement of the internal organs of the chest, compression of the lungs and reduction of the sagittal diameter were all taken into account. For the {sup 192}Ir, the higher doses values were obtained for the prostate and surrounding organs, as the colon, gonads and bladder. Considering the {sup 125}I sources, with photons with lower energies, the doses to organs that are far from the prostate were lower. All values for the dose rates are in agreement with those recommended for brachytherapy treatments. Besides that, the new seeds evaluated in this work present usefulness as a new tool in prostate brachytherapy treatments, and the methodology employed in this work may be applied for other radiation sources, or treatments. (authors)

  1. Open Standards, Open Source, and Open Innovation: Harnessing the Benefits of Openness

    ERIC Educational Resources Information Center

    Committee for Economic Development, 2006

    2006-01-01

    Digitization of information and the Internet have profoundly expanded the capacity for openness. This report details the benefits of openness in three areas--open standards, open-source software, and open innovation--and examines the major issues in the debate over whether openness should be encouraged or not. The report explains each of these…

  2. Certified Training for Nuclear and Radioactive Source Security Management.

    PubMed

    Johnson, Daniel

    2016-11-24

    Radioactive sources are used by hospitals, research facilities and industry for such purposes as diagnosing and treating illnesses, sterilising equipment and inspecting welds. Unfortunately, many States, regulatory authorities and licensees may not appreciate how people with malevolent intentions could use radioactive sources, and statistics confirm that a number of security incidents happen around the globe. The adversary could be common thieves, activists, insiders, terrorists and organised crime groups. Mitigating this risk requires well trained and competent staff who have developed the knowledge, attributes and skills necessary to successfully discharge their security responsibilities. The International Atomic Energy Agency and the World Institute for Nuclear Security are leading international training efforts. The target audience is a multi-disciplinary group of professionals with management responsibilities for security at facilities with radioactive sources. These efforts to promote training and competence amongst practitioners have been recognised at the 2014 and 2016 Nuclear Security and Nuclear Industry Summits.

  3. Organisation of the disposal of radioactive sources from Scottish hospitals.

    PubMed

    Corrigall, R S; Martin, C J; Watson, I

    2004-09-01

    An amnesty for disposal of sealed radioactive sources from Scottish hospitals has been funded by the Scottish Executive to address problems arising from accumulation of sources. The contract was awarded to a company involved in radioactive source recycling. Coordination of uplifts from several hospitals allowed considerable financial savings to be made, so source amnesties could offer monetary advantages to Health and Education Departments elsewhere in the UK, as well as alleviating the problem from security and storage of sources that are no longer required. The sources originated in 14 hospitals, but were uplifted from five pick-up points. There were a total of 246 sources with 167 of these being caesium-137. The total activity was 16.2 TBq with one large 16.1 TBq blood irradiator source and the activities of all the other sources adding up to 167 GBq. This paper describes organisation of the collection. Options for achieving compliance with the Radioactive Substances Act 1993 are discussed, although in the event, special authorisations were obtained for each hospital. Arrangements for transport of the sources and source security were drawn up including emergency procedures for dealing with foreseeable incidents. The police provided secure overnight storage for the loaded truck and assistance in directing and monitoring progress of the load.

  4. AKM in Open Source Communities

    NASA Astrophysics Data System (ADS)

    Stamelos, Ioannis; Kakarontzas, George

    Previous chapters in this book have dealt with Architecture Knowledge Management in traditional Closed Source Software (CSS) projects. This chapterwill attempt to examine the ways that knowledge is shared among participants in Free Libre Open Source Software (FLOSS 1) projects and how architectural knowledge is managed w.r.t. CSS. FLOSS projects are organized and developed in a fundamentally different way than CSS projects. FLOSS projects simply do not develop code as CSS projects do. As a consequence, their knowledge management mechanisms are also based on different concepts and tools.

  5. METHOD OF PREPARING RADIOACTIVE CESIUM SOURCES

    DOEpatents

    Quinby, T.C.

    1963-12-17

    A method of preparing a cesium-containing radiation source with physical and chemical properties suitable for high-level use is presented. Finely divided silica is suspended in a solution containing cesium, normally the fission-product isotope cesium 137. Sodium tetraphenyl boron is then added to quantitatively precipitate the cesium. The cesium-containing precipitate is converted to borosilicate glass by heating to the melting point and cooling. Up to 60 weight percent cesium, with a resulting source activity of up to 21 curies per gram, is incorporated in the glass. (AEC)

  6. Don't Throw Away Your Radioactive Sources!

    ERIC Educational Resources Information Center

    Tracy, Charles; Cunningham, Elizabeth

    2014-01-01

    This article reports on a plea directed to schools in England that changed status to an "academy" and thus lost their Local Authority Radiation Protection Adviser (RPA) service. These schools have been encouraged to do all that they can to hang on to their sources (radioactive equipment used in classroom experiments to investigate…

  7. Don't Throw Away Your Radioactive Sources!

    ERIC Educational Resources Information Center

    Tracy, Charles; Cunningham, Elizabeth

    2014-01-01

    This article reports on a plea directed to schools in England that changed status to an "academy" and thus lost their Local Authority Radiation Protection Adviser (RPA) service. These schools have been encouraged to do all that they can to hang on to their sources (radioactive equipment used in classroom experiments to investigate…

  8. Radioactive check sources for alpha and beta sensitive radiological instrumentation

    SciTech Connect

    Barnett, J.M.; Kane, J.E. II

    1994-06-01

    Since 1991, the Westinghouse Hanford Company has examined the construction and use of alpha and beta radioactive check sources for calibrating instruments and for performing response checks of instruments used for operational and environmental radiation detection. The purpose of using a radioactive check source is to characterize the response of a radiation monitoring instrument in the presence of radioactivity. To accurately calibrate the instrument and check its response, the check source used must emulate as closely as possible the actual physical and isotopic conditions being monitored. The isotope employed and the physical methods used to fabricate the check source (among other factors) determine instrument response. Although information from applicable national and international standards, journal articles, books, and government documents was considered, empirical data collected is most valuable when considering the type of source to use for a particular application. This paper presents source construction methods, use considerations, and standard recommendations. The results of a Hanford Site evaluation of several types of alpha and beta sources are also given.

  9. Registration for the Hanford Site: Sources of radioactive emissions

    SciTech Connect

    Silvia, M.J.

    1993-04-01

    This Registration Application serves to renew the registration for all Hanford Site sources of radioactive air emissions routinely reported to the State of Washington Department of Health (DOH). The current registration expires on August 15, 1993. The Application is submitted pursuant to the Washington Administrative Code (WAC) Chapter 246--247, and is consistent with guidance provided by DOH for renewal. The Application subdivides the Hanford Site into six major production, processing or research areas. Those six areas are in the 100 Area, 200 East Area, 200 West Area, 300 Area, 400 Area, and 600 Area. Each major group of point sources within the six areas listed above is represented by a Source Registration for Radioactive Air Emissions form. Annual emissions. for the sources are listed in the ``Radionuclide Air Emissions Report for the Hanford Site,`` published annually. It is a requirement that the following Statement of Compliance be provided: ``The radioactive air emissions from the above sources do meet the emissions standards contained in Chapter 173-480-040 WAC, Ambient Air Quality Standards and Emissions Limits for Radionuclides. As the Statement of Compliance pertains to this submittal, the phrase ``above sources`` is to be understood as meaning the combined air emissions from all sources registered by this submittal.

  10. A Multicusp Ion Source for Radioactive Ion Beams

    NASA Astrophysics Data System (ADS)

    Wutte, D.; Freedman, S.; Gough, R.; Lee, Y.; Leitner, M.; Leung, K. N.; Lyneis, C.; Picard, D. S.; Sun, L.; Williams, M. D.; Xie, Z. Q.

    1997-05-01

    In order to produce a radioactive ion beam of (14)O+, a 10-cm-diameter, 13.56 MHz radio frequency (rf) driven multicusp ion source is now being developed at Lawrence Berkeley National Laboratory. In this paper we describe the specific ion source design and the basic ion source characteristics using Ar, Xe and a 90types of measurements have been performed: extractable ion current, ion species distributions, gas efficiency, axial energy spread and ion beam emittance measurements. The source can generate ion current densities of approximately 60 mA/cm2 . In addition the design of the ion beam extraction/transport system for the actual experimental setup for the radioactive beam line will be presented.

  11. The HYPE Open Source Community

    NASA Astrophysics Data System (ADS)

    Strömbäck, L.; Pers, C.; Isberg, K.; Nyström, K.; Arheimer, B.

    2013-12-01

    The Hydrological Predictions for the Environment (HYPE) model is a dynamic, semi-distributed, process-based, integrated catchment model. It uses well-known hydrological and nutrient transport concepts and can be applied for both small and large scale assessments of water resources and status. In the model, the landscape is divided into classes according to soil type, vegetation and altitude. The soil representation is stratified and can be divided in up to three layers. Water and substances are routed through the same flow paths and storages (snow, soil, groundwater, streams, rivers, lakes) considering turn-over and transformation on the way towards the sea. HYPE has been successfully used in many hydrological applications at SMHI. For Europe, we currently have three different models; The S-HYPE model for Sweden; The BALT-HYPE model for the Baltic Sea; and the E-HYPE model for the whole Europe. These models simulate hydrological conditions and nutrients for their respective areas and are used for characterization, forecasts, and scenario analyses. Model data can be downloaded from hypeweb.smhi.se. In addition, we provide models for the Arctic region, the Arab (Middle East and Northern Africa) region, India, the Niger River basin, the La Plata Basin. This demonstrates the applicability of the HYPE model for large scale modeling in different regions of the world. An important goal with our work is to make our data and tools available as open data and services. For this aim we created the HYPE Open Source Community (OSC) that makes the source code of HYPE available for anyone interested in further development of HYPE. The HYPE OSC (hype.sourceforge.net) is an open source initiative under the Lesser GNU Public License taken by SMHI to strengthen international collaboration in hydrological modeling and hydrological data production. The hypothesis is that more brains and more testing will result in better models and better code. The code is transparent and can be changed

  12. Underground Sources of Radioactive Noble Gas

    SciTech Connect

    Hayes, James C.; Bowyer, Ted W.; Cordova, Elsa A.; Kirkham, Randy R.; Misner, Alex C.; Olsen, Khris B.; Woods, Vincent T.; Emer, Dudley

    2013-05-01

    It is well known that radon is present in relatively high concentrations below the surface of the Earth due to natural decay of uranium and thorium. However, less information is available on the background levels of other isotopes such as 133Xe and 131mXe produced via spontaneous fission of either manmade or naturally occurring elements. The background concentrations of radioxenon in the subsurface are important to understand because these isotopes potentially can be used to confirm violations of the Comprehensive Nuclear-Test-Ban Treaty (CTBT) during an On-Site Inspection (OSI). Recently, Pacific Northwest National Laboratory (PNNL) measured radioxenon concentrations from the subsurface at the Nevada Nuclear Security Site (NNSS—formerly known as the Nevada Test Site) to determine whether xenon isotope background levels could be detected from spontaneous fission of naturally occurring uranium or legacy 240Pu as a result of historic nuclear testing. In this paper, we discuss the results of those measurements and review the sources of xenon background that must be taken into account during OSI noble gas measurements.

  13. Government/Industry Partnership on the Security of Radioactive Sources

    SciTech Connect

    Cefus, Greg; Colhoun, Stefan C.; Freier, Keith D.; Wright, Kyle A.; Herdes, Gregory A.

    2006-05-01

    In the past, industry radiation protection programs were built almost exclusively around radiation safety and the minimization of radiation dose exposure to employees. Over the last decade, and especially the last few years, the emphasis has shifted to include the physical security and enhanced control of radioactive materials. The threat of nuclear and radiological terrorism is a genuine international security concern. In May 2004, the U.S. Department of Energy/U.S. National Nuclear Security Administration unveiled the Global Threat Reduction Initiative (GTRI) to respond to a growing international concern for the proper control and security of radioactive and nuclear materials. An integral part of the GTRI, the International Radiological Threat Reduction (IRTR) Program, was established in February 2002, originally as a Task Force. The IRTR Program is foremost a government-to-government cooperative program with the mission to reduce the risk posed by vulnerable radioactive materials that could be used in a Radioactive Dispersal Device (RDD). However, governments alone cannot prevent the misuse and illicit trafficking of radioactive sources. By expanding the role of private industry as a partner, existing government regulatory infrastructures can be enhanced by formulating and adopting industry self-regulation and self-policing measures. There is international concern regarding the security and control of the vast number of well-logging sources used during oil exploration operations. The prevalence of these sources, coupled with their portability, is a legitimate security concern. The energy exploration industry has well established safety and security protocols and the IRTR Program seeks to build on this foundation. However, the IRTR Program does not have sufficient resources to address the issue without industry assistance, so it is looking to the oil and gas industry to help identify alternative means for accomplishing our mutual objectives. This paper describes

  14. Open-source software: not quite endsville.

    PubMed

    Stahl, Matthew T

    2005-02-01

    Open-source software will never achieve ubiquity. There are environments in which it simply does not flourish. By its nature, open-source development requires free exchange of ideas, community involvement, and the efforts of talented and dedicated individuals. However, pressures can come from several sources that prevent this from happening. In addition, openness and complex licensing issues invite misuse and abuse. Care must be taken to avoid the pitfalls of open-source software.

  15. Integrated Management Program Radioactive Sealed Sources in Egypt

    SciTech Connect

    Hasan, A.; Cochran, J. R.; El-Adham, K.; El-Sorougy, R.

    2003-02-26

    The radioactive materials in ''public'' locations are typically contained in small, stainless steel capsules known as sealed radiation sources (RS). These capsules seal in the radioactive materials, but not the radiation, because it is the radiation that is needed for a wide variety of applications at hospitals, medical clinics, manufacturing plants, universities, construction sites, and other facilities in the public sector. Radiation sources are readily available, and worldwide there are hundreds of thousands of RS. The IMPRSS Project is a cooperative development between the Egyptian Atomic Energy Authority (EAEA), Egyptian Ministry of Health (MOH), Sandia National Laboratories (SNL), New Mexico Tech University (NMT), and Agriculture Cooperative Development International (ACDI/VOCA). SNL will coordinate the work scope between the participant organizations.

  16. Radioactive Rh wire as a source for new nanomaterials

    NASA Astrophysics Data System (ADS)

    Lucas, S.; Hofferlin, E.

    2007-09-01

    In this paper, we address the experimental details of a radioactive evaporation source that can potentially be used to produce X-rays radioactive devices at a nanometer scale. The source consists of Rh wire that has been irradiated in a 14 MeV cyclotron. A 22 keV X-ray emitter results from the 103Rh(p,n) 103Pd nuclear reaction. 103Pd is currently widely used in brachytherapy. Thanks to physical differences in evaporation and melting temperature but also diffusion coefficients between 103Pd and 103Rh, 103Pd is extracted from the raw material by dry distillation at high temperature (1000-1470 °C) and under vacuum (2×10 -5 mbar). Spectroscopic gamma analysis of the raw material and atoms condensed on the substrates are presented. Diffusion coefficients are also deduced.

  17. Open Source: Everyone Becomes a Printer.

    ERIC Educational Resources Information Center

    Bruce, Bertram

    2000-01-01

    Discusses "open source": a method of distributing software in which programmers make available to all the actual text of their programs. Notes that this makes possible "open-source" writing in the same way that the printing press made possible "open-source" reading, enabling mass literacy. Examines implications of…

  18. Open Source: Everyone Becomes a Printer.

    ERIC Educational Resources Information Center

    Bruce, Bertram

    2000-01-01

    Discusses "open source": a method of distributing software in which programmers make available to all the actual text of their programs. Notes that this makes possible "open-source" writing in the same way that the printing press made possible "open-source" reading, enabling mass literacy. Examines implications of…

  19. Cable attachment for a radioactive brachytherapy source capsule

    DOEpatents

    Gross, Ian G; Pierce, Larry A

    2006-07-18

    In cancer brachytherapy treatment, a small californium-252 neutron source capsule is attached to a guide cable using a modified crimping technique. The guide cable has a solid cylindrical end, and the attachment employs circumferential grooves micromachined in the solid cable end. The attachment was designed and tested, and hardware fabricated for use inside a radioactive hot cell. A welding step typically required in other cable attachments is avoided.

  20. COMPARISON OF RECURSIVE ESTIMATION TECHNIQUES FOR POSITION TRACKING RADIOACTIVE SOURCES

    SciTech Connect

    K. MUSKE; J. HOWSE

    2000-09-01

    This paper compares the performance of recursive state estimation techniques for tracking the physical location of a radioactive source within a room based on radiation measurements obtained from a series of detectors at fixed locations. Specifically, the extended Kalman filter, algebraic observer, and nonlinear least squares techniques are investigated. The results of this study indicate that recursive least squares estimation significantly outperforms the other techniques due to the severe model nonlinearity.

  1. Closed source experimental system for soft x-ray spectroscopy of radioactive materials

    SciTech Connect

    Modin, A.; Butorin, S. M.; Vegelius, J.; Olsson, A.; Englund, C.-J.; Andersson, J.; Werme, L.; Nordgren, J.; Kaeaembre, T.; Skarnemark, G.; Burakov, B. E.

    2008-09-15

    An instrumental and experimental setup for soft x-ray spectroscopy meeting the requirements of a closed source for radioactivity is described. The system consists of a vacuum sealed cell containing the sample, mounted on a tubing system to ensure compatibility with most standard manipulators. The soft x rays penetrate a thin x-ray window separating the interior of the cell from the vacuum in the experimental chamber. Our first results for single crystal PuO{sub 2} confirm the feasibility of experiments using the setup. The results are consistent with results of first principles calculations and previously recorded spectra obtained using a standard open source setup. The results show that the closed source experimental system can be used to collect valuable experimental data from radioactive materials.

  2. The HYPE Open Source Community

    NASA Astrophysics Data System (ADS)

    Strömbäck, Lena; Arheimer, Berit; Pers, Charlotta; Isberg, Kristina

    2013-04-01

    The Hydrological Predictions for the Environment (HYPE) model is a dynamic, semi-distributed, process-based, integrated catchment model (Lindström et al., 2010). It uses well-known hydrological and nutrient transport concepts and can be applied for both small and large scale assessments of water resources and status. In the model, the landscape is divided into classes according to soil type, vegetation and altitude. The soil representation is stratified and can be divided in up to three layers. Water and substances are routed through the same flow paths and storages (snow, soil, groundwater, streams, rivers, lakes) considering turn-over and transformation on the way towards the sea. In Sweden, the model is used by water authorities to fulfil the Water Framework Directive and the Marine Strategy Framework Directive. It is used for characterization, forecasts, and scenario analyses. Model data can be downloaded for free from three different HYPE applications: Europe (www.smhi.se/e-hype), Baltic Sea basin (www.smhi.se/balt-hype), and Sweden (vattenweb.smhi.se) The HYPE OSC (hype.sourceforge.net) is an open source initiative under the Lesser GNU Public License taken by SMHI to strengthen international collaboration in hydrological modelling and hydrological data production. The hypothesis is that more brains and more testing will result in better models and better code. The code is transparent and can be changed and learnt from. New versions of the main code will be delivered frequently. The main objective of the HYPE OSC is to provide public access to a state-of-the-art operational hydrological model and to encourage hydrologic expertise from different parts of the world to contribute to model improvement. HYPE OSC is open to everyone interested in hydrology, hydrological modelling and code development - e.g. scientists, authorities, and consultancies. The HYPE Open Source Community was initiated in November 2011 by a kick-off and workshop with 50 eager participants

  3. The Commercial Open Source Business Model

    NASA Astrophysics Data System (ADS)

    Riehle, Dirk

    Commercial open source software projects are open source software projects that are owned by a single firm that derives a direct and significant revenue stream from the software. Commercial open source at first glance represents an economic paradox: How can a firm earn money if it is making its product available for free as open source? This paper presents the core properties of com mercial open source business models and discusses how they work. Using a commercial open source approach, firms can get to market faster with a superior product at lower cost than possible for traditional competitors. The paper shows how these benefits accrue from an engaged and self-supporting user community. Lacking any prior comprehensive reference, this paper is based on an analysis of public statements by practitioners of commercial open source. It forges the various anecdotes into a coherent description of revenue generation strategies and relevant business functions.

  4. Flowsheets and source terms for radioactive waste projections

    SciTech Connect

    Forsberg, C.W.

    1985-03-01

    Flowsheets and source terms used to generate radioactive waste projections in the Integrated Data Base (IDB) Program are given. Volumes of each waste type generated per unit product throughput have been determined for the following facilities: uranium mining, UF/sub 6/ conversion, uranium enrichment, fuel fabrication, boiling-water reactors (BWRs), pressurized-water reactors (PWRs), and fuel reprocessing. Source terms for DOE/defense wastes have been developed. Expected wastes from typical decommissioning operations for each facility type have been determined. All wastes are also characterized by isotopic composition at time of generation and by general chemical composition. 70 references, 21 figures, 53 tables.

  5. Active radiometric calorimeter for absolute calibration of radioactive sources

    SciTech Connect

    Stump, K.E.; DeWerd, L.A.; Rudman, D.A.; Schima, S.A.

    2005-03-01

    This report describes the design and initial noise floor measurements of a radiometric calorimeter designed to measure therapeutic medical radioactive sources. The instrument demonstrates a noise floor of approximately 2 nW. This low noise floor is achieved by using high temperature superconducting (HTS) transition edge sensor (TES) thermometers in a temperature-control feedback loop. This feedback loop will be used to provide absolute source calibrations based upon the electrical substitution method. Other unique features of the calorimeter are (a) its ability to change sources for calibration without disrupting the vacuum of the instrument, and (b) the ability to measure the emitted power of a source in addition to the total contained source power.

  6. End of Life Decisions for Sealed Radioactive Sources

    SciTech Connect

    Pryor, Kathryn H.

    2016-02-29

    Sealed radioactive sources are encountered in a wide variety of settings – from household smoke detectors and instrument check sources, through fixed industrial gauges, industrial radiography and well logging sources, to irradiators and medical teletherapy devices. In general, the higher the level of activity in the sealed source, the stricter the regulatory control that is applied to its use, control and ultimate disposition. Lower levels of attention and oversight can and do lead to sources ending up in the wrong place – as orphan sources in uncontrolled storage, disposed in a sanitary landfill, melted down in metal recycling operations and incorporated into consumer products, or handled by an unsuspecting member of the public. There are a range of issues that contribute to the problem of improper disposal of sealed sources, and, in particular, to disused source disposal. General licensed sources and devices are particularly at risk of being disposed incorrectly. Higher activity general licensed sources, although required to be registered with the Nuclear Regulatory Commission (NRC) or Agreement State, receive limited regulatory oversight and are not tracked on a national scale. Users frequently do not consider the full life-cycle costs when procuring sources or devices and discover that they cannot afford to package, transport and dispose of their sources properly. The NRC requirements for decommissioning funding plans and financial assurance are not adequate to cover sealed source transport and disposal costs fully. While there are regulatory limits for storage of disused sources, enforcement is limited and there is no financial incentive for owners to dispose of the sources. In some cases, the lack of availability of approved Department of Transportation (DOT) Type B shipping casks also presents a barrier to sealed source disposal. The report of the Disused Sources Working Group does an excellent job of framing these issues. This article reviews both the

  7. 2011 Radioactive Materials Usage Survey for Unmonitored Point Sources

    SciTech Connect

    Sturgeon, Richard W.

    2012-06-27

    This report provides the results of the 2011 Radioactive Materials Usage Survey for Unmonitored Point Sources (RMUS), which was updated by the Environmental Protection (ENV) Division's Environmental Stewardship (ES) at Los Alamos National Laboratory (LANL). ES classifies LANL emission sources into one of four Tiers, based on the potential effective dose equivalent (PEDE) calculated for each point source. Detailed descriptions of these tiers are provided in Section 3. The usage survey is conducted annually; in odd-numbered years the survey addresses all monitored and unmonitored point sources and in even-numbered years it addresses all Tier III and various selected other sources. This graded approach was designed to ensure that the appropriate emphasis is placed on point sources that have higher potential emissions to the environment. For calendar year (CY) 2011, ES has divided the usage survey into two distinct reports, one covering the monitored point sources (to be completed later this year) and this report covering all unmonitored point sources. This usage survey includes the following release points: (1) all unmonitored sources identified in the 2010 usage survey, (2) any new release points identified through the new project review (NPR) process, and (3) other release points as designated by the Rad-NESHAP Team Leader. Data for all unmonitored point sources at LANL is stored in the survey files at ES. LANL uses this survey data to help demonstrate compliance with Clean Air Act radioactive air emissions regulations (40 CFR 61, Subpart H). The remainder of this introduction provides a brief description of the information contained in each section. Section 2 of this report describes the methods that were employed for gathering usage survey data and for calculating usage, emissions, and dose for these point sources. It also references the appropriate ES procedures for further information. Section 3 describes the RMUS and explains how the survey results are

  8. Management of spent sealed radioactive sources in Turkey.

    PubMed

    Osmanlioglu, Ahmet Erdal

    2006-09-01

    Spent radioactive sources (SRS) have been generated from industrial applications, research, and medicine in Turkey. In this study, management of SRS (Co, Cs) at Cekmece Waste Processing and Storage Facility (CWPSF) is described. Eleven Cs sources (total 851 GBq) and four Co sources (total 27.75 GBq) that had been used as levels and density gauges were conditioned. Reinforced metal drums (200 L in volume) and cement matrix were used for conditioning of these sources. In this way, greater confinement was achieved for long-term storage. Maximum dose rates at the surface of the conditioned waste package were determined. In addition to information about conditioning stages of the sources, various calculations that have been done for shielding are presented. Surface dose rates of the waste packages were 1.60 mSv h for Cs and 1.63 mSv h for Co. Measurements of the final waste packages were presented to fulfill the requirements (<2 mSv h) of transportation according to regulations for the safe transport of radioactive material.

  9. Threat Identification Parameters for a Stolen Category 1 Radioactive Source

    SciTech Connect

    Ussery, Larry Eugene; Winkler, Ryan; Myers, Steven Charles

    2016-02-18

    Radioactive sources are used very widely for research and practical applications across medicine, industry, government, universities, and agriculture. The risks associated with these sources vary widely depending on the specific radionuclide used to make the source, source activity, and its chemical and physical form. Sources are categorized by a variety of classification schemes according to the specific risk they pose to the public. This report specifically addresses sources that are classified in the highest category for health risk (category 1). Exposure to an unshielded or lightly shielded category 1 source is extremely dangerous to life and health and can be fatal in relatively short exposure times measured in seconds to minutes. A Category 1 source packaged according to the guidelines dictated by the NRC and U.S. Department of Transportation will typically be surrounded by a large amount of dense shielding material, but will still exhibit a significant dose rate in close proximity. Detection ranges for Category 1 gamma ray sources can extend beyond 5000 ft, but will depend mostly on the source isotope and activity, and the level of shielding around the source. Category 1 sources are easy to detect, but difficult to localize. Dose rates in proximity to an unshielded Category 1 source are extraordinarily high. At distances of a few hundred feet, the functionality of many commonly used handheld instruments will be extremely limited for both the localization and identification of the source. Radiation emitted from a Category 1 source will scatter off of both solid material (ground and buildings) and the atmosphere, a phenomenon known as skyshine. This scattering affects the ability to easily localize and find the source.

  10. A concentrated radioactive beam source for atom cooling and trapping

    SciTech Connect

    Maddi, J.; Dinneen, T.; Ghiorso, A.; Gould, H.

    1996-05-01

    The authors describe a novel oven to obtain concentrated beams of radioactive atoms. The Orthotropic oven works by ionizing atoms on its interior walls and electrostatically concentrating them on a neutralizer. Once neutralized the atoms can escape from the oven and form a narrow beam. Atoms that fail to escape become ionized again and repeat the cycle. The authors demonstrate the operation of this oven using {sup 221}Fr and compare both the theoretical and experimental efficiency of this source with standard effusive and channeled ovens.

  11. Recursive Estimation for the Tracking of Radioactive Sources

    SciTech Connect

    Howse, J.W.; Muske, K.R.; Ticknor, L.O.

    1999-02-01

    This paper describes a recursive estimation algorithm used for tracking the physical location of radioactive sources in real-time as they are moved around in a facility. The al- gorithm is a nonlinear least squares estimation that mini- mizes the change in, the source location and the deviation between measurements and model predictions simultane- ously. The measurements used to estimate position consist of four count rates reported by four different gamma ray de tectors. There is an uncertainty in the source location due to the variance of the detected count rate. This work repre- sents part of a suite of tools which will partially automate security and safety assessments, allow some assessments to be done remotely, and provide additional sensor modalities with which to make assessments.

  12. Recursive estimation for the tracking of radioactive sources

    SciTech Connect

    Howse, J.W.; Ticknor, L.O.; Muske, K.R.

    1998-12-31

    This paper describes a recursive estimation algorithm used for tracking the physical location of radioactive sources in real-time as they are moved around in a facility. The algorithm is related to a nonlinear least squares estimation that minimizes the change in the source location and the deviation between measurements and model predictions simultaneously. The measurements used to estimate position consist of four count rates reported by four different gamma ray detectors. There is an uncertainty in the source location due to the large variance of the detected count rate. This work represents part of a suite of tools which will partially automate security and safety assessments, allow some assessments to be done remotely, and provide additional sensor modalities with which to make assessments.

  13. Free for All: Open Source Software

    ERIC Educational Resources Information Center

    Schneider, Karen

    2008-01-01

    Open source software has become a catchword in libraryland. Yet many remain unclear about open source's benefits--or even what it is. So what is open source software (OSS)? It's software that is free in every sense of the word: free to download, free to use, and free to view or modify. Most OSS is distributed on the Web and one doesn't need to…

  14. Free for All: Open Source Software

    ERIC Educational Resources Information Center

    Schneider, Karen

    2008-01-01

    Open source software has become a catchword in libraryland. Yet many remain unclear about open source's benefits--or even what it is. So what is open source software (OSS)? It's software that is free in every sense of the word: free to download, free to use, and free to view or modify. Most OSS is distributed on the Web and one doesn't need to…

  15. Open-source hardware for medical devices.

    PubMed

    Niezen, Gerrit; Eslambolchilar, Parisa; Thimbleby, Harold

    2016-04-01

    Open-source hardware is hardware whose design is made publicly available so anyone can study, modify, distribute, make and sell the design or the hardware based on that design. Some open-source hardware projects can potentially be used as active medical devices. The open-source approach offers a unique combination of advantages, including reducing costs and faster innovation. This article compares 10 of open-source healthcare projects in terms of how easy it is to obtain the required components and build the device.

  16. Open-source hardware for medical devices

    PubMed Central

    2016-01-01

    Open-source hardware is hardware whose design is made publicly available so anyone can study, modify, distribute, make and sell the design or the hardware based on that design. Some open-source hardware projects can potentially be used as active medical devices. The open-source approach offers a unique combination of advantages, including reducing costs and faster innovation. This article compares 10 of open-source healthcare projects in terms of how easy it is to obtain the required components and build the device. PMID:27158528

  17. Open Genetic Code: on open source in the life sciences.

    PubMed

    Deibel, Eric

    2014-01-01

    The introduction of open source in the life sciences is increasingly being suggested as an alternative to patenting. This is an alternative, however, that takes its shape at the intersection of the life sciences and informatics. Numerous examples can be identified wherein open source in the life sciences refers to access, sharing and collaboration as informatic practices. This includes open source as an experimental model and as a more sophisticated approach of genetic engineering. The first section discusses the greater flexibly in regard of patenting and the relationship to the introduction of open source in the life sciences. The main argument is that the ownership of knowledge in the life sciences should be reconsidered in the context of the centrality of DNA in informatic formats. This is illustrated by discussing a range of examples of open source models. The second part focuses on open source in synthetic biology as exemplary for the re-materialization of information into food, energy, medicine and so forth. The paper ends by raising the question whether another kind of alternative might be possible: one that looks at open source as a model for an alternative to the commodification of life that is understood as an attempt to comprehensively remove the restrictions from the usage of DNA in any of its formats.

  18. The 2016 Bioinformatics Open Source Conference (BOSC)

    PubMed Central

    Harris, Nomi L.; Cock, Peter J.A.; Chapman, Brad; Fields, Christopher J.; Hokamp, Karsten; Lapp, Hilmar; Muñoz-Torres, Monica; Wiencko, Heather

    2016-01-01

    Message from the ISCB: The Bioinformatics Open Source Conference (BOSC) is a yearly meeting organized by the Open Bioinformatics Foundation (OBF), a non-profit group dedicated to promoting the practice and philosophy of Open Source software development and Open Science within the biological research community. BOSC has been run since 2000 as a two-day Special Interest Group (SIG) before the annual ISMB conference. The 17th annual BOSC ( http://www.open-bio.org/wiki/BOSC_2016) took place in Orlando, Florida in July 2016. As in previous years, the conference was preceded by a two-day collaborative coding event open to the bioinformatics community. The conference brought together nearly 100 bioinformatics researchers, developers and users of open source software to interact and share ideas about standards, bioinformatics software development, and open and reproducible science. PMID:27781083

  19. The 2016 Bioinformatics Open Source Conference (BOSC).

    PubMed

    Harris, Nomi L; Cock, Peter J A; Chapman, Brad; Fields, Christopher J; Hokamp, Karsten; Lapp, Hilmar; Muñoz-Torres, Monica; Wiencko, Heather

    2016-01-01

    Message from the ISCB: The Bioinformatics Open Source Conference (BOSC) is a yearly meeting organized by the Open Bioinformatics Foundation (OBF), a non-profit group dedicated to promoting the practice and philosophy of Open Source software development and Open Science within the biological research community. BOSC has been run since 2000 as a two-day Special Interest Group (SIG) before the annual ISMB conference. The 17th annual BOSC ( http://www.open-bio.org/wiki/BOSC_2016) took place in Orlando, Florida in July 2016. As in previous years, the conference was preceded by a two-day collaborative coding event open to the bioinformatics community. The conference brought together nearly 100 bioinformatics researchers, developers and users of open source software to interact and share ideas about standards, bioinformatics software development, and open and reproducible science.

  20. Experiments with radioactive samples at the Advanced Photon Source.

    SciTech Connect

    Veluri, V. R.; Justus, A.; Glagola, B.; Rauchas, A.; Vacca, J.

    2000-11-01

    The Advanced Photon Source (APS) at Argonne National Laboratory is a national synchrotron-radiation light source research facility. The 7 GeV electron Storage Ring is currently delivering intense high brilliance x-ray beams to a total of 34 beamlines with over 120 experiment stations to members of the international scientific community to carry out forefront basic and applied research in several scientific disciplines. Researchers come to the APS either as members of Collaborative Access Teams (CATs) or as Independent Investigators (IIs). Collaborative Access Teams comprise large number of investigators from universities, industry, and research laboratories with common research objectives. These teams are responsible for the design, construction, finding, and operation of beamlines. They are the owners of their experimental enclosures (''hutches'') designed and built to meet their specific research needs. Fig. 1 gives a plan view of the location of the Collaborative Access Teams by Sector and Discipline. In the past two years, over 2000 individual experiments were conducted at the APS facility. Of these, about 60 experiments involved the use of radioactive samples, which is less than 3% of the total. However, there is an increase in demand for experiment stations to accommodate the use of radioactive samples in different physical forms embedded in various matrices with activity levels ranging from trace amounts of naturally occurring radionuclides to MBq (mCi) quantities including transuranics. This paper discusses in some detail the steps in the safety review process for experiments involving radioactive samples and how ALARA philosophy is invoked at each step and implemented.

  1. OpenADR Open Source Toolkit: Developing Open Source Software for the Smart Grid

    SciTech Connect

    McParland, Charles

    2011-02-01

    Demand response (DR) is becoming an increasingly important part of power grid planning and operation. The advent of the Smart Grid, which mandates its use, further motivates selection and development of suitable software protocols to enable DR functionality. The OpenADR protocol has been developed and is being standardized to serve this goal. We believe that the development of a distributable, open source implementation of OpenADR will benefit this effort and motivate critical evaluation of its capabilities, by the wider community, for providing wide-scale DR services

  2. Low-level radioactive waste source terms for the 1992 integrated data base

    SciTech Connect

    Loghry, S L; Kibbey, A H; Godbee, H W; Icenhour, A S; DePaoli, S M

    1995-01-01

    This technical manual presents updated generic source terms (i.e., unitized amounts and radionuclide compositions) which have been developed for use in the Integrated Data Base (IDB) Program of the U.S. Department of Energy (DOE). These source terms were used in the IDB annual report, Integrated Data Base for 1992: Spent Fuel and Radioactive Waste Inventories, Projections, and Characteristics, DOE/RW-0006, Rev. 8, October 1992. They are useful as a basis for projecting future amounts (volume and radioactivity) of low-level radioactive waste (LLW) shipped for disposal at commercial burial grounds or sent for storage at DOE solid-waste sites. Commercial fuel cycle LLW categories include boiling-water reactor, pressurized-water reactor, fuel fabrication, and uranium hexafluoride (UF{sub 6}) conversion. Commercial nonfuel cycle LLW includes institutional/industrial (I/I) waste. The LLW from DOE operations is category as uranium/thorium fission product, induced activity, tritium, alpha, and {open_quotes}other{close_quotes}. Fuel cycle commercial LLW source terms are normalized on the basis of net electrical output [MW(e)-year], except for UF{sub 6} conversion, which is normalized on the basis of heavy metal requirement [metric tons of initial heavy metal ]. The nonfuel cycle commercial LLW source term is normalized on the basis of volume (cubic meters) and radioactivity (curies) for each subclass within the I/I category. The DOE LLW is normalized in a manner similar to that for commercial I/I waste. The revised source terms are based on the best available historical data through 1992.

  3. End of Life Decisions for Sealed Radioactive Sources.

    PubMed

    Pryor, Kathryn H

    2016-02-01

    Sealed radioactive sources are encountered in a wide variety of settings-from household smoke detectors and instrument check sources through fixed industrial gauges, industrial radiography, and well logging sources, to irradiators and medical teletherapy devices. In general, the higher the level of activity in the sealed source, the stricter the regulatory control that is applied to its use, control, and ultimate disposition. Lower levels of attention and oversight can and do lead to sources ending up in the wrong place--as orphan sources in uncontrolled storage, disposed in a sanitary landfill, melted down in metal recycling operations and incorporated into consumer products, or handled by an unsuspecting member of the public. There is a range of issues that contribute to the problem of improper disposal of sealed sources and, in particular, to disused source disposal. Generally licensed sources and devices are particularly at risk of being disposed incorrectly. Higher activity generally licensed sources, although required to be registered with the (NRC) or an Agreement State, receive limited regulatory oversight and are not tracked on a national scale. Users frequently do not consider the full life-cycle costs when procuring sources or devices and discover that they cannot afford and/or are unwilling to pay the associated costs to package, transport and dispose of their sources properly. The NRC requirements for decommissioning funding plans and financial assurance are not adequate to cover sealed source transport and disposal costs fully. While there are regulatory limits for storage of disused sources, enforcement is limited, and there are only limited financial incentives in a small number of states for owners to dispose of the sources. In some cases, the lack of availability of approved Type B shipping casks presents an additional barrier to sealed source disposal. The report of the Disused Sources Working Group does an excellent job of framing these issues

  4. Study on induced radioactivity of China Spallation Neutron Source

    NASA Astrophysics Data System (ADS)

    Wu, Qing-Biao; Wang, Qing-Bin; Wu, Jing-Min; Ma, Zhong-Jian

    2011-06-01

    China Spallation Neutron Source (CSNS) is the first High Energy Intense Proton Accelerator planned to be constructed in China during the State Eleventh Five-Year Plan period, whose induced radioactivity is very important for occupational disease hazard assessment and environmental impact assessment. Adopting the FLUKA code, the authors have constructed a cylinder-tunnel geometric model and a line-source sampling physical model, deduced proper formulas to calculate air activation, and analyzed various issues with regard to the activation of different tunnel parts. The results show that the environmental impact resulting from induced activation is negligible, whereas the residual radiation in the tunnels has a great influence on maintenance personnel, so strict measures should be adopted.

  5. 7 Questions to Ask Open Source Vendors

    ERIC Educational Resources Information Center

    Raths, David

    2012-01-01

    With their budgets under increasing pressure, many campus IT directors are considering open source projects for the first time. On the face of it, the savings can be significant. Commercial emergency-planning software can cost upward of six figures, for example, whereas the open source Kuali Ready might run as little as $15,000 per year when…

  6. 7 Questions to Ask Open Source Vendors

    ERIC Educational Resources Information Center

    Raths, David

    2012-01-01

    With their budgets under increasing pressure, many campus IT directors are considering open source projects for the first time. On the face of it, the savings can be significant. Commercial emergency-planning software can cost upward of six figures, for example, whereas the open source Kuali Ready might run as little as $15,000 per year when…

  7. Open Source 2010: Reflections on 2007

    ERIC Educational Resources Information Center

    Wheeler, Brad

    2007-01-01

    Colleges and universities and commercial firms have demonstrated great progress in realizing the vision proffered for "Open Source 2007," and 2010 will mark even greater progress. Although much work remains in refining open source for higher education applications, the signals are now clear: the collaborative development of software can provide…

  8. Extraction Simulations and Emittance Measurements of a Holifield Radioactive Ion Beam Facility Electron Beam Plasma Source for Radioactive Ion Beams

    SciTech Connect

    Mendez, II, Anthony J; Liu, Yuan

    2010-01-01

    The Holifield Radioactive Ion Beam Facility (HRIBF) at Oak Ridge National Laboratory has a variety of ion sources used to produce radioactive ion beams (RIBs). Of these, the workhorse is an electron beam plasma (EBP) ion source. The recent addition of a second RIB injector, the Injector for Radioactive Ion Species 2 (IRIS2), for the HRIBF tandem accelerator prompted new studies of the optics of the beam extraction from the EBP source. The source was modeled using SIMION V8.0, and results will be presented, including comparison of the emittances as predicted by simulation and as measured at the HRIBF offline ion source test facilities. Also presented will be the impact on phase space shape resulting from extraction optics modifications implemented at IRIS2.

  9. "Open-Sourcing" Personal Learning

    ERIC Educational Resources Information Center

    Fiedler, Sebastian H.D.

    2014-01-01

    This article offers a critical reflection on the contemporary Open Educational Resource (OER) movement, its unquestioned investment in a collective "content fetish" and an educational "problem description" that focuses on issues of scarcity, access, and availability of quality materials. It also argues that OER proponents fail…

  10. Automated management of radioactive sources in Saudi Arabia

    SciTech Connect

    Al-Kheliewi, Abdullah S.; Jamil, M. F.; Basar, M. R.; Tuwaili, W. R.

    2014-09-30

    For usage of radioactive substances, any facility has to register and take license from relevant authority of the country in which such facility is operating. In the Kingdom of Saudi Arabia (KSA), the authority for managing radioactive sources and providing licenses to organizations for its usage is the National Center of Radiation Protection (NCRP). This paper describes the system that automates registration and licensing process of the National Center of Radiation Protection. To provide 24×7 accesses to all the customers of NCRP, system is developed as web-based application that provide facility to online register, request license, renew license, check request status, view historical data and reports etc. and other features are provided as Electronic Services that would be accessible to users via internet. The system also was designed to streamline and optimize internal operations of NCRP besides providing ease of access to its customers by implementing a defined workflow through which every registration and license request will be routed. In addition to manual payment option, the system would also be integrated with SADAD (online payment system) that will avoid lengthy and cumbersome procedures associated with manual payment mechanism. Using SADAD payment option license fee could be paid through internet/ATM machine or branch of any designated bank, Payment will be instantly notified to NCRP hence delay in funds transfer and verification of invoice could be avoided, SADAD integration is discussed later in the document.

  11. Automated management of radioactive sources in Saudi Arabia

    NASA Astrophysics Data System (ADS)

    Al-Kheliewi, Abdullah S.; Jamil, M. F.; Basar, M. R.; Tuwaili, W. R.

    2014-09-01

    For usage of radioactive substances, any facility has to register and take license from relevant authority of the country in which such facility is operating. In the Kingdom of Saudi Arabia (KSA), the authority for managing radioactive sources and providing licenses to organizations for its usage is the National Center of Radiation Protection (NCRP). This paper describes the system that automates registration and licensing process of the National Center of Radiation Protection. To provide 24×7 accesses to all the customers of NCRP, system is developed as web-based application that provide facility to online register, request license, renew license, check request status, view historical data and reports etc. and other features are provided as Electronic Services that would be accessible to users via internet. The system also was designed to streamline and optimize internal operations of NCRP besides providing ease of access to its customers by implementing a defined workflow through which every registration and license request will be routed. In addition to manual payment option, the system would also be integrated with SADAD (online payment system) that will avoid lengthy and cumbersome procedures associated with manual payment mechanism. Using SADAD payment option license fee could be paid through internet/ATM machine or branch of any designated bank, Payment will be instantly notified to NCRP hence delay in funds transfer and verification of invoice could be avoided, SADAD integration is discussed later in the document.

  12. The Efficient Utilization of Open Source Information

    SciTech Connect

    Baty, Samuel R.

    2016-08-11

    These are a set of slides on the efficient utilization of open source information. Open source information consists of a vast set of information from a variety of sources. Not only does the quantity of open source information pose a problem, the quality of such information can hinder efforts. To show this, two case studies are mentioned: Iran and North Korea, in order to see how open source information can be utilized. The huge breadth and depth of open source information can complicate an analysis, especially because open information has no guarantee of accuracy. Open source information can provide key insights either directly or indirectly: looking at supporting factors (flow of scientists, products and waste from mines, government budgets, etc.); direct factors (statements, tests, deployments). Fundamentally, it is the independent verification of information that allows for a more complete picture to be formed. Overlapping sources allow for more precise bounds on times, weights, temperatures, yields or other issues of interest in order to determine capability. Ultimately, a "good" answer almost never comes from an individual, but rather requires the utilization of a wide range of skill sets held by a team of people.

  13. Weather forecasting with open source software

    NASA Astrophysics Data System (ADS)

    Rautenhaus, Marc; Dörnbrack, Andreas

    2013-04-01

    To forecast the weather situation during aircraft-based atmospheric field campaigns, we employ a tool chain of existing and self-developed open source software tools and open standards. Of particular value are the Python programming language with its extension libraries NumPy, SciPy, PyQt4, Matplotlib and the basemap toolkit, the NetCDF standard with the Climate and Forecast (CF) Metadata conventions, and the Open Geospatial Consortium Web Map Service standard. These open source libraries and open standards helped to implement the "Mission Support System", a Web Map Service based tool to support weather forecasting and flight planning during field campaigns. The tool has been implemented in Python and has also been released as open source (Rautenhaus et al., Geosci. Model Dev., 5, 55-71, 2012). In this presentation we discuss the usage of free and open source software for weather forecasting in the context of research flight planning, and highlight how the field campaign work benefits from using open source tools and open standards.

  14. Radioactive source materials in Los Estados Unidos de Venezuela

    USGS Publications Warehouse

    Wyant, Donald G.; Sharp, William N.; Rodriguez, Carlos Ponte

    1953-01-01

    This report summarizes the data available on radioactive source materials in Los Estados Unidos de Venezuela accumulated by geologists of the Direccions Tecnica de Geolgia and antecedent agencies prior to June 1951, and the writers from June to November 1951. The investigation comprised preliminary study, field examination, office studies, and the preparation of this report, in which the areas and localities examined are described in detail, the uranium potentialities of Venezuela are summarized, and recommendations are made. Preliminary study was made to select areas and rock types that were known or reported to be radioactive or that geologic experience suggests would be favorable host for uranium deposits, In the office, a study of gamma-ray well logs was started as one means of amassing general radiometric data and of rapidly scanning many of ye rocks in northern Venezuela; gamma-ray logs from about 140 representative wells were examined and their peaks of gamma intensity evaluated; in addition samples were analyzed radiometrically, and petrographically. Radiometic reconnaissance was made in the field during about 3 months of 1951, or about 12 areas, including over 100 localities in the State of Miranda, Carabobo, Yaracuy, Falcon, Lara, Trujillo, Zulia, Merida, Tachira, Bolivar, and Territory Delta Amacuro. During the course of the investigation, both in the filed and office, information was given about geology of uranium deposits, and in techniques used in prospecting and analysis. All studies and this report are designed to supplement and to strengthen the Direccion Tecnica de Geologias's program of investigation of radioactive source in Venezuela now in progress. The uranium potentialities of Los Estados de Venezuela are excellent for large, low-grade deposits of uraniferous phospahtic shales containing from 0.002 to 0.027 percent uranium; fair, for small or moderate-sized, low-grade placer deposits of thorium, rare-earth, and uranium minerals; poor, for

  15. Freeing Worldview's development process: Open source everything!

    NASA Astrophysics Data System (ADS)

    Gunnoe, T.

    2016-12-01

    Freeing your code and your project are important steps for creating an inviting environment for collaboration, with the added side effect of keeping a good relationship with your users. NASA Worldview's codebase was released with the open source NOSA (NASA Open Source Agreement) license in 2014, but this is only the first step. We also have to free our ideas, empower our users by involving them in the development process, and open channels that lead to the creation of a community project. There are many highly successful examples of Free and Open Source Software (FOSS) projects of which we can take note: the Linux kernel, Debian, GNOME, etc. These projects owe much of their success to having a passionate mix of developers/users with a great community and a common goal in mind. This presentation will describe the scope of this openness and how Worldview plans to move forward with a more community-inclusive approach.

  16. A clinic compatible, open source electrophysiology system.

    PubMed

    Hermiz, John; Rogers, Nick; Kaestner, Erik; Ganji, Mehran; Cleary, Dan; Snider, Joseph; Barba, David; Dayeh, Shadi; Halgren, Eric; Gilja, Vikash

    2016-08-01

    Open source electrophysiology (ephys) recording systems have several advantages over commercial systems such as customization and affordability enabling more researchers to conduct ephys experiments. Notable open source ephys systems include Open-Ephys, NeuroRighter and more recently Willow, all of which have high channel count (64+), scalability, and advanced software to develop on top of. However, little work has been done to build an open source ephys system that is clinic compatible, particularly in the operating room where acute human electrocorticography (ECoG) research is performed. We developed an affordable (<; $10,000) and open system for research purposes that features power isolation for patient safety, compact and water resistant enclosures and 256 recording channels sampled up to 20ksam/sec, 16-bit. The system was validated by recording ECoG with a high density, thin film device for an acute, awake craniotomy study at UC San Diego, Thornton Hospital Operating Room.

  17. An open source model for open access journal publication.

    PubMed

    Blesius, Carl R; Williams, Michael A; Holzbach, Ana; Huntley, Arthur C; Chueh, Henry

    2005-01-01

    We describe an electronic journal publication infrastructure that allows a flexible publication workflow, academic exchange around different forms of user submissions, and the exchange of articles between publishers and archives using a common XML based standard. This web-based application is implemented on a freely available open source software stack. This publication demonstrates the Dermatology Online Journal's use of the platform for non-biased independent open access publication.

  18. OpenStudio: An Open Source Integrated Analysis Platform; Preprint

    SciTech Connect

    Guglielmetti, R.; Macumber, D.; Long, N.

    2011-12-01

    High-performance buildings require an integrated design approach for all systems to work together optimally; systems integration needs to be incorporated in the earliest stages of design for efforts to be cost and energy-use effective. Building designers need a full-featured software framework to support rigorous, multidisciplinary building simulation. An open source framework - the OpenStudio Software Development Kit (SDK) - is being developed to address this need. In this paper, we discuss the needs that drive OpenStudio's system architecture and goals, provide a development status report (the SDK is currently in alpha release), and present a brief case study that illustrates its utility and flexibility.

  19. Assessment on security system of radioactive sources used in hospitals of Thailand

    SciTech Connect

    Jitbanjong, Petchara Wongsawaeng, Doonyapong

    2016-01-22

    Unsecured radioactive sources have caused deaths and serious injuries in many parts of the world. In Thailand, there are 17 hospitals that use teletherapy with cobalt-60 radioactive sources. They need to be secured in order to prevent unauthorized removal, sabotage and terrorists from using such materials in a radiological weapon. The security system of radioactive sources in Thailand is regulated by the Office of Atoms for Peace in compliance with Global Threat Reduction Initiative (GTRI), U.S. DOE, which has started to be implemented since 2010. This study aims to perform an assessment on the security system of radioactive sources used in hospitals in Thailand and the results can be used as a recommended baseline data for development or improvement of hospitals on the security system of a radioactive source at a national regulatory level and policy level. Results from questionnaires reveal that in 11 out of 17 hospitals (64.70%), there were a few differences in conditions of hospitals using radioactive sources with installation of the security system and those without installation of the security system. Also, personals working with radioactive sources did not clearly understand the nuclear security law. Thus, government organizations should be encouraged to arrange trainings on nuclear security to increase the level of understanding. In the future, it is recommended that the responsible government organization issues a minimum requirement of nuclear security for every medical facility using radioactive sources.

  20. Assessment on security system of radioactive sources used in hospitals of Thailand

    NASA Astrophysics Data System (ADS)

    Jitbanjong, Petchara; Wongsawaeng, Doonyapong

    2016-01-01

    Unsecured radioactive sources have caused deaths and serious injuries in many parts of the world. In Thailand, there are 17 hospitals that use teletherapy with cobalt-60 radioactive sources. They need to be secured in order to prevent unauthorized removal, sabotage and terrorists from using such materials in a radiological weapon. The security system of radioactive sources in Thailand is regulated by the Office of Atoms for Peace in compliance with Global Threat Reduction Initiative (GTRI), U.S. DOE, which has started to be implemented since 2010. This study aims to perform an assessment on the security system of radioactive sources used in hospitals in Thailand and the results can be used as a recommended baseline data for development or improvement of hospitals on the security system of a radioactive source at a national regulatory level and policy level. Results from questionnaires reveal that in 11 out of 17 hospitals (64.70%), there were a few differences in conditions of hospitals using radioactive sources with installation of the security system and those without installation of the security system. Also, personals working with radioactive sources did not clearly understand the nuclear security law. Thus, government organizations should be encouraged to arrange trainings on nuclear security to increase the level of understanding. In the future, it is recommended that the responsible government organization issues a minimum requirement of nuclear security for every medical facility using radioactive sources.

  1. Demonstration and development of control mechanism for radioactive sources in Saudi Arabia

    NASA Astrophysics Data System (ADS)

    Al-Kheliewi, A. S.

    2012-06-01

    Saudi Arabia have no nuclear industry. Nevertheless, many radioactive sources, for different purposes, have been used in the country. There is upswing in the number of companies that recruit nuclear technology in their daily work. The National Center for Radiation Protection (NCRP) takes the full commitment and responsibility for monitoring and regulating the movement of radioactive sources in the country. NCRP issues the licenses for import, export, and use of radioactive sources. It, also, protects the country from any trespassing radiation through a sizable net of early warning and radiation monitoring stations along the borders of Saudi Arabia. This paper talks about the procedures of licensing, importing, exporting of radioactive sources. It, also, sheds light on types of implementing radioactive sources in different practices encompass medicine, industry, research. The NCRP has established an electronic web site to ease the communication with all users in the country. This site is yet in the experimental stage.

  2. Demonstration and development of control mechanism for radioactive sources in Saudi Arabia

    SciTech Connect

    Al-Kheliewi, A. S.

    2012-06-06

    Saudi Arabia have no nuclear industry. Nevertheless, many radioactive sources, for different purposes, have been used in the country. There is upswing in the number of companies that recruit nuclear technology in their daily work. The National Center for Radiation Protection (NCRP) takes the full commitment and responsibility for monitoring and regulating the movement of radioactive sources in the country. NCRP issues the licenses for import, export, and use of radioactive sources. It, also, protects the country from any trespassing radiation through a sizable net of early warning and radiation monitoring stations along the borders of Saudi Arabia. This paper talks about the procedures of licensing, importing, exporting of radioactive sources. It, also, sheds light on types of implementing radioactive sources in different practices encompass medicine, industry, research. The NCRP has established an electronic web site to ease the communication with all users in the country. This site is yet in the experimental stage.

  3. Open source bioimage informatics for cell biology.

    PubMed

    Swedlow, Jason R; Eliceiri, Kevin W

    2009-11-01

    Significant technical advances in imaging, molecular biology and genomics have fueled a revolution in cell biology, in that the molecular and structural processes of the cell are now visualized and measured routinely. Driving much of this recent development has been the advent of computational tools for the acquisition, visualization, analysis and dissemination of these datasets. These tools collectively make up a new subfield of computational biology called bioimage informatics, which is facilitated by open source approaches. We discuss why open source tools for image informatics in cell biology are needed, some of the key general attributes of what make an open source imaging application successful, and point to opportunities for further operability that should greatly accelerate future cell biology discovery.

  4. Web accessibility and open source software.

    PubMed

    Obrenović, Zeljko

    2009-07-01

    A Web browser provides a uniform user interface to different types of information. Making this interface universally accessible and more interactive is a long-term goal still far from being achieved. Universally accessible browsers require novel interaction modalities and additional functionalities, for which existing browsers tend to provide only partial solutions. Although functionality for Web accessibility can be found as open source and free software components, their reuse and integration is complex because they were developed in diverse implementation environments, following standards and conventions incompatible with the Web. To address these problems, we have started several activities that aim at exploiting the potential of open-source software for Web accessibility. The first of these activities is the development of Adaptable Multi-Interface COmmunicator (AMICO):WEB, an infrastructure that facilitates efficient reuse and integration of open source software components into the Web environment. The main contribution of AMICO:WEB is in enabling the syntactic and semantic interoperability between Web extension mechanisms and a variety of integration mechanisms used by open source and free software components. Its design is based on our experiences in solving practical problems where we have used open source components to improve accessibility of rich media Web applications. The second of our activities involves improving education, where we have used our platform to teach students how to build advanced accessibility solutions from diverse open-source software. We are also partially involved in the recently started Eclipse projects called Accessibility Tools Framework (ACTF), the aim of which is development of extensible infrastructure, upon which developers can build a variety of utilities that help to evaluate and enhance the accessibility of applications and content for people with disabilities. In this article we briefly report on these activities.

  5. Open Data, Open Source and Open Standards in chemistry: The Blue Obelisk five years on

    PubMed Central

    2011-01-01

    Background The Blue Obelisk movement was established in 2005 as a response to the lack of Open Data, Open Standards and Open Source (ODOSOS) in chemistry. It aims to make it easier to carry out chemistry research by promoting interoperability between chemistry software, encouraging cooperation between Open Source developers, and developing community resources and Open Standards. Results This contribution looks back on the work carried out by the Blue Obelisk in the past 5 years and surveys progress and remaining challenges in the areas of Open Data, Open Standards, and Open Source in chemistry. Conclusions We show that the Blue Obelisk has been very successful in bringing together researchers and developers with common interests in ODOSOS, leading to development of many useful resources freely available to the chemistry community. PMID:21999342

  6. Open Data, Open Source and Open Standards in chemistry: The Blue Obelisk five years on.

    PubMed

    O'Boyle, Noel M; Guha, Rajarshi; Willighagen, Egon L; Adams, Samuel E; Alvarsson, Jonathan; Bradley, Jean-Claude; Filippov, Igor V; Hanson, Robert M; Hanwell, Marcus D; Hutchison, Geoffrey R; James, Craig A; Jeliazkova, Nina; Lang, Andrew Sid; Langner, Karol M; Lonie, David C; Lowe, Daniel M; Pansanel, Jérôme; Pavlov, Dmitry; Spjuth, Ola; Steinbeck, Christoph; Tenderholt, Adam L; Theisen, Kevin J; Murray-Rust, Peter

    2011-10-14

    The Blue Obelisk movement was established in 2005 as a response to the lack of Open Data, Open Standards and Open Source (ODOSOS) in chemistry. It aims to make it easier to carry out chemistry research by promoting interoperability between chemistry software, encouraging cooperation between Open Source developers, and developing community resources and Open Standards. This contribution looks back on the work carried out by the Blue Obelisk in the past 5 years and surveys progress and remaining challenges in the areas of Open Data, Open Standards, and Open Source in chemistry. We show that the Blue Obelisk has been very successful in bringing together researchers and developers with common interests in ODOSOS, leading to development of many useful resources freely available to the chemistry community.

  7. OSIRIX: open source multimodality image navigation software

    NASA Astrophysics Data System (ADS)

    Rosset, Antoine; Pysher, Lance; Spadola, Luca; Ratib, Osman

    2005-04-01

    The goal of our project is to develop a completely new software platform that will allow users to efficiently and conveniently navigate through large sets of multidimensional data without the need of high-end expensive hardware or software. We also elected to develop our system on new open source software libraries allowing other institutions and developers to contribute to this project. OsiriX is a free and open-source imaging software designed manipulate and visualize large sets of medical images: http://homepage.mac.com/rossetantoine/osirix/

  8. Uranium Glass: A Glowing Alternative to Conventional Sources of Radioactivity

    NASA Astrophysics Data System (ADS)

    Boot, Roeland

    2017-02-01

    There is a relatively simple way of using radioactive material in classroom experiments: uranium glass, which provides teachers with a suitable substance. By using the right computer software and a radiation sensor, it can be demonstrated that uranium glass emits radiation at a greater rate than the background radiation and with the aid of UV light a bright green luster appears. Therefore, with two pieces of uranium glass, students can learn about two different physical phenomena: fluorescence and radioactivity.

  9. Open source, open standards, and health care information systems.

    PubMed

    Reynolds, Carl J; Wyatt, Jeremy C

    2011-02-17

    Recognition of the improvements in patient safety, quality of patient care, and efficiency that health care information systems have the potential to bring has led to significant investment. Globally the sale of health care information systems now represents a multibillion dollar industry. As policy makers, health care professionals, and patients, we have a responsibility to maximize the return on this investment. To this end we analyze alternative licensing and software development models, as well as the role of standards. We describe how licensing affects development. We argue for the superiority of open source licensing to promote safer, more effective health care information systems. We claim that open source licensing in health care information systems is essential to rational procurement strategy.

  10. Open Source, Open Standards, and Health Care Information Systems

    PubMed Central

    2011-01-01

    Recognition of the improvements in patient safety, quality of patient care, and efficiency that health care information systems have the potential to bring has led to significant investment. Globally the sale of health care information systems now represents a multibillion dollar industry. As policy makers, health care professionals, and patients, we have a responsibility to maximize the return on this investment. To this end we analyze alternative licensing and software development models, as well as the role of standards. We describe how licensing affects development. We argue for the superiority of open source licensing to promote safer, more effective health care information systems. We claim that open source licensing in health care information systems is essential to rational procurement strategy. PMID:21447469

  11. Dynamic Radioactive Source for Evaluating and Demonstrating Time-dependent Performance of Continuous Air Monitors.

    PubMed

    McLean, Thomas D; Moore, Murray E; Justus, Alan L; Hudston, Jonathan A; Barbé, Benoît

    2016-11-01

    Evaluation of continuous air monitors in the presence of a plutonium aerosol is time intensive, expensive, and requires a specialized facility. The Radiation Protection Services Group at Los Alamos National Laboratory has designed a Dynamic Radioactive Source, intended to replace plutonium aerosol challenge testing. The Dynamic Radioactive Source is small enough to be inserted into the sampler filter chamber of a typical continuous air monitor. Time-dependent radioactivity is introduced from electroplated sources for real-time testing of a continuous air monitor where a mechanical wristwatch motor rotates a mask above an alpha-emitting electroplated disk source. The mask is attached to the watch's minute hand, and as it rotates, more of the underlying source is revealed. The measured alpha activity increases with time, simulating the arrival of airborne radioactive particulates at the air sampler inlet. The Dynamic Radioactive Source allows the temporal behavior of puff and chronic release conditions to be mimicked without the need for radioactive aerosols. The new system is configurable to different continuous air monitor designs and provides an in-house testing capability (benchtop compatible). It is a repeatable and reusable system and does not contaminate the tested air monitor. Test benefits include direct user control, realistic (plutonium) aerosol spectra, and iterative development of continuous air monitor alarm algorithms. Data obtained using the Dynamic Radioactive Source has been used to elucidate alarm algorithms and to compare the response time of two commercial continuous air monitors.

  12. Dynamic Radioactive Source for Evaluating and Demonstrating Time-dependent Performance of Continuous Air Monitors

    DOE PAGES

    McLean, Thomas D.; Moore, Murray E.; Justus, Alan L.; ...

    2016-01-01

    Evaluation of continuous air monitors in the presence of a plutonium aerosol is time intensive, expensive, and requires a specialized facility. The Radiation Protection Services Group at Los Alamos National Laboratory has designed a Dynamic Radioactive Source, intended to replace plutonium aerosol challenge testing. Furthermore, the Dynamic Radioactive Source is small enough to be inserted into the sampler filter chamber of a typical continuous air monitor. Time-dependent radioactivity is introduced from electroplated sources for real-time testing of a continuous air monitor where a mechanical wristwatch motor rotates a mask above an alpha-emitting electroplated disk source. The mask is attached tomore » the watch’s minute hand, and as it rotates, more of the underlying source is revealed. The alpha activity we measured increases with time, simulating the arrival of airborne radioactive particulates at the air sampler inlet. The Dynamic Radioactive Source allows the temporal behavior of puff and chronic release conditions to be mimicked without the need for radioactive aerosols. The new system is configurable to different continuous air monitor designs and provides an in-house testing capability (benchtop compatible). It is a repeatable and reusable system and does not contaminate the tested air monitor. Test benefits include direct user control, realistic (plutonium) aerosol spectra, and iterative development of continuous air monitor alarm algorithms. We also used data obtained using the Dynamic Radioactive Source to elucidate alarm algorithms and to compare the response time of two commercial continuous air monitors.« less

  13. Dynamic Radioactive Source for Evaluating and Demonstrating Time-dependent Performance of Continuous Air Monitors

    SciTech Connect

    McLean, Thomas D.; Moore, Murray E.; Justus, Alan L.; Hudston, Jonathan A.; Barbé, Benoît

    2016-01-01

    Evaluation of continuous air monitors in the presence of a plutonium aerosol is time intensive, expensive, and requires a specialized facility. The Radiation Protection Services Group at Los Alamos National Laboratory has designed a Dynamic Radioactive Source, intended to replace plutonium aerosol challenge testing. Furthermore, the Dynamic Radioactive Source is small enough to be inserted into the sampler filter chamber of a typical continuous air monitor. Time-dependent radioactivity is introduced from electroplated sources for real-time testing of a continuous air monitor where a mechanical wristwatch motor rotates a mask above an alpha-emitting electroplated disk source. The mask is attached to the watch’s minute hand, and as it rotates, more of the underlying source is revealed. The alpha activity we measured increases with time, simulating the arrival of airborne radioactive particulates at the air sampler inlet. The Dynamic Radioactive Source allows the temporal behavior of puff and chronic release conditions to be mimicked without the need for radioactive aerosols. The new system is configurable to different continuous air monitor designs and provides an in-house testing capability (benchtop compatible). It is a repeatable and reusable system and does not contaminate the tested air monitor. Test benefits include direct user control, realistic (plutonium) aerosol spectra, and iterative development of continuous air monitor alarm algorithms. We also used data obtained using the Dynamic Radioactive Source to elucidate alarm algorithms and to compare the response time of two commercial continuous air monitors.

  14. Radioactive artifacts: historical sources of modern radium contamination

    SciTech Connect

    Blaufox, M.D.

    1988-01-01

    Radium has been distributed in a wide variety of devices during the early part of this century. Antique objects containing significant amounts of radium turn up at flea markets, antique shows, and antique dealers, in a variety of locations. These objects include radium in devices which were used by legitimate medical practitioners for legitimate medical purposes such as therapy, as well as a wide variety of quack cures. These devices may contain anywhere from a few nanocuries to as much as several hundred microcuries of radium. In addition to medical sources, a large variety of scientific instruments utilize radium in luminous dials. These instruments include compasses, azimuth indicators, and virtually any object which might require some form of calibration. In addition, the consumer market utilized a large amount of radium in the production of wrist watches, pocket watches, and clocks with luminous dials. Some of these watches contained as much as 4.5 microCi of radium, and between 1913 and 1920 about 70 gm was produced for the manufacture of luminous compounds. In addition to the large amount of radium produced for scientific and consumer utilization, there were a number of materials produced which were claimed to contain radium but in fact did not, further adding to the confusion in this area. The wide availability of radium is a result of the public's great fascination with radioactivity during the early part of this century and a belief in its curative properties. A number of objects were produced in order to trap the emanations of radium in water for persons to drink in order to benefit from their healing effects. Since the late 20s and early 30s the public's attitude towards radiation has shifted 180 degrees and it is now considered an extremely dangerous and harmful material.

  15. Web Server Security on Open Source Environments

    NASA Astrophysics Data System (ADS)

    Gkoutzelis, Dimitrios X.; Sardis, Manolis S.

    Administering critical resources has never been more difficult that it is today. In a changing world of software innovation where major changes occur on a daily basis, it is crucial for the webmasters and server administrators to shield their data against an unknown arsenal of attacks in the hands of their attackers. Up until now this kind of defense was a privilege of the few, out-budgeted and low cost solutions let the defender vulnerable to the uprising of innovating attacking methods. Luckily, the digital revolution of the past decade left its mark, changing the way we face security forever: open source infrastructure today covers all the prerequisites for a secure web environment in a way we could never imagine fifteen years ago. Online security of large corporations, military and government bodies is more and more handled by open source application thus driving the technological trend of the 21st century in adopting open solutions to E-Commerce and privacy issues. This paper describes substantial security precautions in facing privacy and authentication issues in a totally open source web environment. Our goal is to state and face the most known problems in data handling and consequently propose the most appealing techniques to face these challenges through an open solution.

  16. Understanding the Requirements for Open Source Software

    DTIC Science & Technology

    2009-06-17

    fields like astrophysics that critically depend on software, open source is considered an essential precondition for research to proceed, and for...contributors or participants, new ideas, new career opportunities, and new research publications. 4.4. Condensing Discourse that Hardens and

  17. Hillmaker: an open source occupancy analysis tool.

    PubMed

    Isken, Mark W

    2005-12-01

    Managerial decision making problems in the healthcare industry often involve considerations of customer occupancy by time of day and day of week. We describe an occupancy analysis tool called Hillmaker which has been used in numerous healthcare operations studies. It is being released as a free and open source software project.

  18. There's No Need to Fear Open Source

    ERIC Educational Resources Information Center

    Balas, Janet

    2005-01-01

    The last time this author wrote about open source (OS) software was in last September's 2004 issue of Computers in Libraries, which was devoted to making the most of what you have and do-it-yourself solutions. After the column appeared, she received an e-mail from David Dorman of Index Data, who believed that she had done OS products a disservice…

  19. There's No Need to Fear Open Source

    ERIC Educational Resources Information Center

    Balas, Janet

    2005-01-01

    The last time this author wrote about open source (OS) software was in last September's 2004 issue of Computers in Libraries, which was devoted to making the most of what you have and do-it-yourself solutions. After the column appeared, she received an e-mail from David Dorman of Index Data, who believed that she had done OS products a disservice…

  20. Implementing Rakim: Open Source Chat Reference Software

    ERIC Educational Resources Information Center

    Caraway, Shawn; Payne, Susan

    2005-01-01

    This article describes the conception, implementation, and current status of Rakim open source software at Midlands Technical college in Columbia, SC. Midlands Technical College (MTC) is a 2-year school in Columbia, S.C. It has two large campuses and three smaller campuses. Although the library functions as a single unit, there are separate…

  1. Of Birkenstocks and Wingtips: Open Source Licenses

    ERIC Educational Resources Information Center

    Gandel, Paul B.; Wheeler, Brad

    2005-01-01

    The notion of collaborating to create open source applications for higher education is rapidly gaining momentum. From course management systems to ERP financial systems, higher education institutions are working together to explore whether they can in fact build a better mousetrap. As Lois Brooks, of Stanford University, recently observed, the…

  2. Of Birkenstocks and Wingtips: Open Source Licenses

    ERIC Educational Resources Information Center

    Gandel, Paul B.; Wheeler, Brad

    2005-01-01

    The notion of collaborating to create open source applications for higher education is rapidly gaining momentum. From course management systems to ERP financial systems, higher education institutions are working together to explore whether they can in fact build a better mousetrap. As Lois Brooks, of Stanford University, recently observed, the…

  3. Open-source syringe pump library.

    PubMed

    Wijnen, Bas; Hunt, Emily J; Anzalone, Gerald C; Pearce, Joshua M

    2014-01-01

    This article explores a new open-source method for developing and manufacturing high-quality scientific equipment suitable for use in virtually any laboratory. A syringe pump was designed using freely available open-source computer aided design (CAD) software and manufactured using an open-source RepRap 3-D printer and readily available parts. The design, bill of materials and assembly instructions are globally available to anyone wishing to use them. Details are provided covering the use of the CAD software and the RepRap 3-D printer. The use of an open-source Rasberry Pi computer as a wireless control device is also illustrated. Performance of the syringe pump was assessed and the methods used for assessment are detailed. The cost of the entire system, including the controller and web-based control interface, is on the order of 5% or less than one would expect to pay for a commercial syringe pump having similar performance. The design should suit the needs of a given research activity requiring a syringe pump including carefully controlled dosing of reagents, pharmaceuticals, and delivery of viscous 3-D printer media among other applications.

  4. Open-Source Syringe Pump Library

    PubMed Central

    Wijnen, Bas; Hunt, Emily J.; Anzalone, Gerald C.; Pearce, Joshua M.

    2014-01-01

    This article explores a new open-source method for developing and manufacturing high-quality scientific equipment suitable for use in virtually any laboratory. A syringe pump was designed using freely available open-source computer aided design (CAD) software and manufactured using an open-source RepRap 3-D printer and readily available parts. The design, bill of materials and assembly instructions are globally available to anyone wishing to use them. Details are provided covering the use of the CAD software and the RepRap 3-D printer. The use of an open-source Rasberry Pi computer as a wireless control device is also illustrated. Performance of the syringe pump was assessed and the methods used for assessment are detailed. The cost of the entire system, including the controller and web-based control interface, is on the order of 5% or less than one would expect to pay for a commercial syringe pump having similar performance. The design should suit the needs of a given research activity requiring a syringe pump including carefully controlled dosing of reagents, pharmaceuticals, and delivery of viscous 3-D printer media among other applications. PMID:25229451

  5. Communal Resources in Open Source Software Development

    ERIC Educational Resources Information Center

    Spaeth, Sebastian; Haefliger, Stefan; von Krogh, Georg; Renzl, Birgit

    2008-01-01

    Introduction: Virtual communities play an important role in innovation. The paper focuses on the particular form of collective action in virtual communities underlying as Open Source software development projects. Method: Building on resource mobilization theory and private-collective innovation, we propose a theory of collective action in…

  6. Open Access, Open Source and Digital Libraries: A Current Trend in University Libraries around the World

    ERIC Educational Resources Information Center

    Krishnamurthy, M.

    2008-01-01

    Purpose: The purpose of this paper is to describe the open access and open source movement in the digital library world. Design/methodology/approach: A review of key developments in the open access and open source movement is provided. Findings: Open source software and open access to research findings are of great use to scholars in developing…

  7. Open Access, Open Source and Digital Libraries: A Current Trend in University Libraries around the World

    ERIC Educational Resources Information Center

    Krishnamurthy, M.

    2008-01-01

    Purpose: The purpose of this paper is to describe the open access and open source movement in the digital library world. Design/methodology/approach: A review of key developments in the open access and open source movement is provided. Findings: Open source software and open access to research findings are of great use to scholars in developing…

  8. Computer Forensics Education - the Open Source Approach

    NASA Astrophysics Data System (ADS)

    Huebner, Ewa; Bem, Derek; Cheung, Hon

    In this chapter we discuss the application of the open source software tools in computer forensics education at tertiary level. We argue that open source tools are more suitable than commercial tools, as they provide the opportunity for students to gain in-depth understanding and appreciation of the computer forensic process as opposed to familiarity with one software product, however complex and multi-functional. With the access to all source programs the students become more than just the consumers of the tools as future forensic investigators. They can also examine the code, understand the relationship between the binary images and relevant data structures, and in the process gain necessary background to become the future creators of new and improved forensic software tools. As a case study we present an advanced subject, Computer Forensics Workshop, which we designed for the Bachelor's degree in computer science at the University of Western Sydney. We based all laboratory work and the main take-home project in this subject on open source software tools. We found that without exception more than one suitable tool can be found to cover each topic in the curriculum adequately. We argue that this approach prepares students better for forensic field work, as they gain confidence to use a variety of tools, not just a single product they are familiar with.

  9. From open source communications to knowledge

    NASA Astrophysics Data System (ADS)

    Preece, Alun; Roberts, Colin; Rogers, David; Webberley, Will; Innes, Martin; Braines, Dave

    2016-05-01

    Rapid processing and exploitation of open source information, including social media sources, in order to shorten decision-making cycles, has emerged as an important issue in intelligence analysis in recent years. Through a series of case studies and natural experiments, focussed primarily upon policing and counter-terrorism scenarios, we have developed an approach to information foraging and framing to inform decision making, drawing upon open source intelligence, in particular Twitter, due to its real-time focus and frequent use as a carrier for links to other media. Our work uses a combination of natural language (NL) and controlled natural language (CNL) processing to support information collection from human sensors, linking and schematising of collected information, and the framing of situational pictures. We illustrate the approach through a series of vignettes, highlighting (1) how relatively lightweight and reusable knowledge models (schemas) can rapidly be developed to add context to collected social media data, (2) how information from open sources can be combined with reports from trusted observers, for corroboration or to identify con icting information; and (3) how the approach supports users operating at or near the tactical edge, to rapidly task information collection and inform decision-making. The approach is supported by bespoke software tools for social media analytics and knowledge management.

  10. Use of radioactive sources in measuring characteristics of snowpacks

    Treesearch

    Henry W. Anderson; Philip M. McDonald; Lloyd W. Gay

    1963-01-01

    Use of radioactive probes inserted in mountain snowpacks may make possible more accurate appraisal and prediction of snowmelt water. Commercially available gamma and neutron probes were tested for their ability to measure snow density, ice lenses, and the thermal quality of individual layers in the snowpack.

  11. Uranium Glass: A Glowing Alternative to Conventional Sources of Radioactivity

    ERIC Educational Resources Information Center

    Boot, Roeland

    2017-01-01

    There is a relatively simple way of using radioactive material in classroom experiments: uranium glass, which provides teachers with a suitable substance. By using the right computer software and a radiation sensor, it can be demonstrated that uranium glass emits radiation at a greater rate than the background radiation and with the aid of UV…

  12. Open Source GIS based integrated watershed management

    NASA Astrophysics Data System (ADS)

    Byrne, J. M.; Lindsay, J.; Berg, A. A.

    2013-12-01

    Optimal land and water management to address future and current resource stresses and allocation challenges requires the development of state-of-the-art geomatics and hydrological modelling tools. Future hydrological modelling tools should be of high resolution, process based with real-time capability to assess changing resource issues critical to short, medium and long-term enviromental management. The objective here is to merge two renowned, well published resource modeling programs to create an source toolbox for integrated land and water management applications. This work will facilitate a much increased efficiency in land and water resource security, management and planning. Following an 'open-source' philosophy, the tools will be computer platform independent with source code freely available, maximizing knowledge transfer and the global value of the proposed research. The envisioned set of water resource management tools will be housed within 'Whitebox Geospatial Analysis Tools'. Whitebox, is an open-source geographical information system (GIS) developed by Dr. John Lindsay at the University of Guelph. The emphasis of the Whitebox project has been to develop a user-friendly interface for advanced spatial analysis in environmental applications. The plugin architecture of the software is ideal for the tight-integration of spatially distributed models and spatial analysis algorithms such as those contained within the GENESYS suite. Open-source development extends knowledge and technology transfer to a broad range of end-users and builds Canadian capability to address complex resource management problems with better tools and expertise for managers in Canada and around the world. GENESYS (Generate Earth Systems Science input) is an innovative, efficient, high-resolution hydro- and agro-meteorological model for complex terrain watersheds developed under the direction of Dr. James Byrne. GENESYS is an outstanding research and applications tool to address

  13. The Emergence of Open-Source Software in China

    ERIC Educational Resources Information Center

    Pan, Guohua; Bonk, Curtis J.

    2007-01-01

    The open-source software movement is gaining increasing momentum in China. Of the limited numbers of open-source software in China, "Red Flag Linux" stands out most strikingly, commanding 30 percent share of Chinese software market. Unlike the spontaneity of open-source movement in North America, open-source software development in…

  14. Open-source tools for data mining.

    PubMed

    Zupan, Blaz; Demsar, Janez

    2008-03-01

    With a growing volume of biomedical databases and repositories, the need to develop a set of tools to address their analysis and support knowledge discovery is becoming acute. The data mining community has developed a substantial set of techniques for computational treatment of these data. In this article, we discuss the evolution of open-source toolboxes that data mining researchers and enthusiasts have developed over the span of a few decades and review several currently available open-source data mining suites. The approaches we review are diverse in data mining methods and user interfaces and also demonstrate that the field and its tools are ready to be fully exploited in biomedical research.

  15. Meteorological Error Budget Using Open Source Data

    DTIC Science & Technology

    2016-09-01

    ARL-TR-7831 ● SEP 2016 US Army Research Laboratory Meteorological Error Budget Using Open- Source Data by J Cogan, J Smith, P...needed. Do not return it to the originator. ARL-TR-7831 ● SEP 2016 US Army Research Laboratory Meteorological Error Budget Using...DD-MM-YYYY) September 2016 2. REPORT TYPE Technical Report 3. DATES COVERED (From - To) 07/2015–08/2016 4. TITLE AND SUBTITLE Meteorological

  16. Open Source Cable Models for EMI Simulations

    NASA Astrophysics Data System (ADS)

    Greedy, S.; Smartt, C.; Thomas, D. W. P.

    2016-05-01

    This paper describes the progress of work towards an Open Source software toolset suitable for developing Spice based multi-conductor cable models. The issues related to creating a transmission line model for implementation in Spice which include the frequency dependent properties of real cables are presented and the viability of spice cable models is demonstrated through application to a three conductor crosstalk model. Development of the techniques to include models of shielded cables and incident field excitation has been demonstrated.

  17. Datacube Services in Action, Using Open Source and Open Standards

    NASA Astrophysics Data System (ADS)

    Baumann, P.; Misev, D.

    2016-12-01

    Array Databases comprise novel, promising technology for massive spatio-temporal datacubes, extending the SQL paradigm of "any query, anytime" to n-D arrays. On server side, such queries can be optimized, parallelized, and distributed based on partitioned array storage. The rasdaman ("raster data manager") system, which has pioneered Array Databases, is available in open source on www.rasdaman.org. Its declarative query language extends SQL with array operators which are optimized and parallelized on server side. The rasdaman engine, which is part of OSGeo Live, is mature and in operational use databases individually holding dozens of Terabytes. Further, the rasdaman concepts have strongly impacted international Big Data standards in the field, including the forthcoming MDA ("Multi-Dimensional Array") extension to ISO SQL, the OGC Web Coverage Service (WCS) and Web Coverage Processing Service (WCPS) standards, and the forthcoming INSPIRE WCS/WCPS; in both OGC and INSPIRE, OGC is WCS Core Reference Implementation. In our talk we present concepts, architecture, operational services, and standardization impact of open-source rasdaman, as well as experiences made.

  18. Open Source Approach to Urban Growth Simulation

    NASA Astrophysics Data System (ADS)

    Petrasova, A.; Petras, V.; Van Berkel, D.; Harmon, B. A.; Mitasova, H.; Meentemeyer, R. K.

    2016-06-01

    Spatial patterns of land use change due to urbanization and its impact on the landscape are the subject of ongoing research. Urban growth scenario simulation is a powerful tool for exploring these impacts and empowering planners to make informed decisions. We present FUTURES (FUTure Urban - Regional Environment Simulation) - a patch-based, stochastic, multi-level land change modeling framework as a case showing how what was once a closed and inaccessible model benefited from integration with open source GIS.We will describe our motivation for releasing this project as open source and the advantages of integrating it with GRASS GIS, a free, libre and open source GIS and research platform for the geospatial domain. GRASS GIS provides efficient libraries for FUTURES model development as well as standard GIS tools and graphical user interface for model users. Releasing FUTURES as a GRASS GIS add-on simplifies the distribution of FUTURES across all main operating systems and ensures the maintainability of our project in the future. We will describe FUTURES integration into GRASS GIS and demonstrate its usage on a case study in Asheville, North Carolina. The developed dataset and tutorial for this case study enable researchers to experiment with the model, explore its potential or even modify the model for their applications.

  19. Open Knee: Open Source Modeling and Simulation in Knee Biomechanics.

    PubMed

    Erdemir, Ahmet

    2016-02-01

    Virtual representations of the knee joint can provide clinicians, scientists, and engineers the tools to explore mechanical functions of the knee and its tissue structures in health and disease. Modeling and simulation approaches such as finite element analysis also provide the possibility to understand the influence of surgical procedures and implants on joint stresses and tissue deformations. A large number of knee joint models are described in the biomechanics literature. However, freely accessible, customizable, and easy-to-use models are scarce. Availability of such models can accelerate clinical translation of simulations, where labor-intensive reproduction of model development steps can be avoided. Interested parties can immediately utilize readily available models for scientific discovery and clinical care. Motivated by this gap, this study aims to describe an open source and freely available finite element representation of the tibiofemoral joint, namely Open Knee, which includes the detailed anatomical representation of the joint's major tissue structures and their nonlinear mechanical properties and interactions. Three use cases illustrate customization potential of the model, its predictive capacity, and its scientific and clinical utility: prediction of joint movements during passive flexion, examining the role of meniscectomy on contact mechanics and joint movements, and understanding anterior cruciate ligament mechanics. A summary of scientific and clinically directed studies conducted by other investigators are also provided. The utilization of this open source model by groups other than its developers emphasizes the premise of model sharing as an accelerator of simulation-based medicine. Finally, the imminent need to develop next-generation knee models is noted. These are anticipated to incorporate individualized anatomy and tissue properties supported by specimen-specific joint mechanics data for evaluation, all acquired in vitro from varying age

  20. 77 FR 64435 - Branch Technical Position on the Import of Non-U.S. Origin Radioactive Sources

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-10-22

    ... Radioactive Sources AGENCY: Nuclear Regulatory Commission. ACTION: Request for comment. SUMMARY: In 2010, the... definition of ``radioactive waste''. The phrase was added to the final rule in response to a public comment... Radioactive Sources,'' published January 20, 2012, five comment letters were received for consideration by the...

  1. Open Source Software to Control Bioflo Bioreactors

    PubMed Central

    Burdge, David A.; Libourel, Igor G. L.

    2014-01-01

    Bioreactors are designed to support highly controlled environments for growth of tissues, cell cultures or microbial cultures. A variety of bioreactors are commercially available, often including sophisticated software to enhance the functionality of the bioreactor. However, experiments that the bioreactor hardware can support, but that were not envisioned during the software design cannot be performed without developing custom software. In addition, support for third party or custom designed auxiliary hardware is often sparse or absent. This work presents flexible open source freeware for the control of bioreactors of the Bioflo product family. The functionality of the software includes setpoint control, data logging, and protocol execution. Auxiliary hardware can be easily integrated and controlled through an integrated plugin interface without altering existing software. Simple experimental protocols can be entered as a CSV scripting file, and a Python-based protocol execution model is included for more demanding conditional experimental control. The software was designed to be a more flexible and free open source alternative to the commercially available solution. The source code and various auxiliary hardware plugins are publicly available for download from https://github.com/LibourelLab/BiofloSoftware. In addition to the source code, the software was compiled and packaged as a self-installing file for 32 and 64 bit windows operating systems. The compiled software will be able to control a Bioflo system, and will not require the installation of LabVIEW. PMID:24667828

  2. Open source software to control Bioflo bioreactors.

    PubMed

    Burdge, David A; Libourel, Igor G L

    2014-01-01

    Bioreactors are designed to support highly controlled environments for growth of tissues, cell cultures or microbial cultures. A variety of bioreactors are commercially available, often including sophisticated software to enhance the functionality of the bioreactor. However, experiments that the bioreactor hardware can support, but that were not envisioned during the software design cannot be performed without developing custom software. In addition, support for third party or custom designed auxiliary hardware is often sparse or absent. This work presents flexible open source freeware for the control of bioreactors of the Bioflo product family. The functionality of the software includes setpoint control, data logging, and protocol execution. Auxiliary hardware can be easily integrated and controlled through an integrated plugin interface without altering existing software. Simple experimental protocols can be entered as a CSV scripting file, and a Python-based protocol execution model is included for more demanding conditional experimental control. The software was designed to be a more flexible and free open source alternative to the commercially available solution. The source code and various auxiliary hardware plugins are publicly available for download from https://github.com/LibourelLab/BiofloSoftware. In addition to the source code, the software was compiled and packaged as a self-installing file for 32 and 64 bit windows operating systems. The compiled software will be able to control a Bioflo system, and will not require the installation of LabVIEW.

  3. Radioactivity

    SciTech Connect

    Baratta, E.J.

    1997-01-01

    Cesium-134 and -137 in Foods, Gamma-Ray Spectrophotometric Methods. The method entitled {open_quotes}Cs-134 and Cs-137 in Foods, Gamma-Ray Spectrophotometric Method{close_quotes} has been adopted official first action, with minor revisions. Iodine 131: The method {open_quotes}Iodine-131 in Milk, Radiochemical Separation Method{close_quotes} has been accepted by the Committee on Residues and Related Topics and has been recommended to the Methods Committee for adoption first action. Search is continuing for a new Associated Referee. Plutonium-239: The Associate Referee is doing a literature search for a method for the determination of plutonium in foods. When one is selected, she will prepared a protocol for a collaborative study and submit it for approval. Radium-228: Search is ongoing for a new Associate Referee. When one is appointed, a method should be selected and tested. Strontium-89 and -90: The Associate Referee is investigating methods using resin discs and/or resin columns for these radionuclides. These methods are now being used in analyses for strontium-89 and -90 in water. She will now attempt to apply it to milk. If successful, she will prepare a protocol for a collaborative study and submit it for approval. Tritium: Search is continuing for a new Associate Referee for this topic.

  4. Open source portal to distributed image repositories

    NASA Astrophysics Data System (ADS)

    Tao, Wenchao; Ratib, Osman M.; Kho, Hwa; Hsu, Yung-Chao; Wang, Cun; Lee, Cason; McCoy, J. M.

    2004-04-01

    In large institution PACS, patient data may often reside in multiple separate systems. While most systems tend to be DICOM compliant, none of them offer the flexibility of seamless integration of multiple DICOM sources through a single access point. We developed a generic portal system with a web-based interactive front-end as well as an application programming interface (API) that allows both web users and client applications to query and retrieve image data from multiple DICOM sources. A set of software tools was developed to allow accessing several DICOM archives through a single point of access. An interactive web-based front-end allows user to search image data seamlessly from the different archives and display the results or route the image data to another DICOM compliant destination. An XML-based API allows other software programs to easily benefit from this portal to query and retrieve image data as well. Various techniques are employed to minimize the performance overhead inherent in the DICOM. The system is integrated with a hospital-wide HIPAA-compliant authentication and auditing service that provides centralized management of access to patient medical records. The system is provided under open source free licensing and developed using open-source components (Apache Tomcat for web server, MySQL for database, OJB for object/relational data mapping etc.). The portal paradigm offers a convenient and effective solution for accessing multiple image data sources in a given healthcare enterprise and can easily be extended to multi-institution through appropriate security and encryption mechanisms.

  5. Predicting induced radioactivity for the accelerator operations at the Taiwan Photon Source.

    PubMed

    Sheu, R J; Jiang, S H

    2010-12-01

    This study investigates the characteristics of induced radioactivity due to the operations of a 3-GeV electron accelerator at the Taiwan Photon Source (TPS). According to the beam loss analysis, the authors set two representative irradiation conditions for the activation analysis. The FLUKA Monte Carlo code has been used to predict the isotope inventories, residual activities, and remanent dose rates as a function of time. The calculation model itself is simple but conservative for the evaluation of induced radioactivity in a light source facility. This study highlights the importance of beam loss scenarios and demonstrates the great advantage of using FLUKA in comparing the predicted radioactivity with corresponding regulatory limits. The calculated results lead to the conclusion that, due to fairly low electron consumption, the radioactivity induced in the accelerator components and surrounding concrete walls of the TPS is rather moderate and manageable, while the possible activation of air and cooling water in the tunnel and their environmental releases are negligible.

  6. Beyond Open Source: According to Jim Hirsch, Open Technology, Not Open Source, Is the Wave of the Future

    ERIC Educational Resources Information Center

    Villano, Matt

    2006-01-01

    This article presents an interview with Jim Hirsch, an associate superintendent for technology at Piano Independent School District in Piano, Texas. Hirsch serves as a liaison for the open technologies committee of the Consortium for School Networking. In this interview, he shares his opinion on the significance of open source in K-12.

  7. Open Source Testing Capability for Geospatial Software

    NASA Astrophysics Data System (ADS)

    Bermudez, L. E.

    2013-12-01

    Geospatial Software enables scientists to discover, access and process information for better understanding of the Earth. Hundreds, if not thousands, of geospatial software packages exist today. Many of these implement open standards. The OGC Implementation Statistics page [1] reports, for example, more than 450 software products that implement the OGC Web Map Service (WMS) 1.1.1 standard. Even though organizations voluntarily report their products as implementing the WMS standard, not all of these implementations can interoperate with each other. For example, a WMS client may not interact with all these WMS servers in the same functional way. Making the software work with other software, even when implementing the same standard, still remains a challenge, and the main reason is that not all implementations implement the standard correctly. The Open Geospatial Consortium (OGC) Compliance Program provides a testing infrastructure to test for the correct implementation of OGC standards in interfaces and encodings that enable communication between geospatial clients and servers. The OGC testing tool and the tests are all freely available, including the source code and access to the testing facility. The Test, Evaluation, And Measurement (TEAM) Engine is a test harness that executes test suites written using the OGC Compliance Testing Language (CTL) or the TestNG framework. TEAM Engine is available in Sourceforge. OGC hosts an official stable [2] deployment of TEAM Engine with the approved test suites. OGC also hosts a Beta TEAM Engine [3] with the tests in Beta and with new TEAM Engine functionality. Both deployments are freely available to everybody. The OGC testing infrastructure not only enables developers to test OGC standards, but it can be configured to test profiles of OGC standards and community-developed application agreements. These agreements can be any interface and encoding agreement, not only OGC based. The OGC Compliance Program is thus an important

  8. The Belgian approach and status on the radiological surveillance of radioactive substances in metal scrap and non-radioactive waste and the financing of orphan sources

    SciTech Connect

    Braeckeveldt, Marnix; Preter, Peter De

    2007-07-01

    Numerous facilities in the non-nuclear sector in Belgium (e.g. in the non-radioactive waste processing and management sector and in the metal recycling sector) have been equipped with measuring ports for detecting radioactive substances. These measuring ports prevent radioactive sources or radioactive contamination from ending up in the material fluxes treated by the sectors concerned. They thus play an important part in the protection of the workers and the people living in the neighbourhood of the facilities, as well as in the protection of the population and the environment in general. In 2006, Belgium's federal nuclear control agency (FANC/AFCN) drew up guidelines for the operators of non-nuclear facilities with a measuring port for detecting radioactive substances. These guidelines describe the steps to be followed by the operators when the port's alarm goes off. Following the publication of the European guideline 2003/122/EURATOM of 22 December 2003 on the control of high-activity sealed radioactive sources and orphan sources, a procedure has been drawn up by FANC/AFCN and ONDRAF/NIRAS, the Belgian National Agency for Radioactive Waste and Enriched Fissile Materials, to identify the responsible to cover the costs relating to the further management of detected sealed sources and if not found to declare the sealed source as an orphan source. In this latter case and from mid-2006 the insolvency fund managed by ONDRAF/NIRAS covers the cost of radioactive waste management. At the request of the Belgian government, a financing proposal for the management of unsealed orphan sources as radioactive waste was also established by FANC/AFCN and ONDRAF/NIRAS. This proposal applies the same approach as for sealed sources and thus the financing of unsealed orphan sources will also be covered by the insolvency fund. (authors)

  9. Enrico Fermi's Discovery of Neutron-Induced Artificial Radioactivity: Neutrons and Neutron Sources

    NASA Astrophysics Data System (ADS)

    Guerra, Francesco; Leone, Matteo; Robotti, Nadia

    2006-09-01

    We reconstruct and analyze the path leading from James Chadwick’s discovery of the neutron in February 1932 through Frédéric Joliot and Irène Curie’s discovery of artificial radioactivity in January 1934 to Enrico Fermi’s discovery of neutron-induced artificial radioactivity in March 1934. We show, in particular, that Fermi’s innovative construction and use of radon-beryllium neutron sources permitted him to make his discovery.

  10. Open Source Live Distributions for Computer Forensics

    NASA Astrophysics Data System (ADS)

    Giustini, Giancarlo; Andreolini, Mauro; Colajanni, Michele

    Current distributions of open source forensic software provide digital investigators with a large set of heterogeneous tools. Their use is not always focused on the target and requires high technical expertise. We present a new GNU/Linux live distribution, named CAINE (Computer Aided INvestigative Environment) that contains a collection of tools wrapped up into a user friendly environment. The CAINE forensic framework introduces novel important features, aimed at filling the interoperability gap across different forensic tools. Moreover, it provides a homogeneous graphical interface that drives digital investigators during the acquisition and analysis of electronic evidence, and it offers a semi-automatic mechanism for the creation of the final report.

  11. Natural radioactivity in lignite samples from open pit mines "Kolubara", Serbia--risk assessment.

    PubMed

    Ðurašević, M; Kandić, A; Stefanović, P; Vukanac, I; Sešlak, B; Milošević, Z; Marković, T

    2014-05-01

    Coal as fossil fuel mainly contains naturally occurring radionuclides from the uranium and thorium series and (40)K. Use of coal, primarily in industry, as a result has dispersion of radioactive material from coal in and through air and water. The aim of this study was to determine the activity concentrations of natural radionuclides in coal samples from open pit mines "Kolubara" and to evaluate its effect on population health. The results showed that all measured and calculated values were below the limits recommended in international legislation. © 2013 Published by Elsevier Ltd.

  12. Safety and security of radioactive sources in industrial radiography in Bangladesh

    SciTech Connect

    Mollah, A. S.; Nazrul, M. Abdullah

    2013-07-01

    Malicious use of radioactive sources can involve dispersal of that material through an explosive device. There has been recognition of the threat posed by the potential malicious misuse of NDT radioactive source by terrorists. The dispersal of radioactive material using conventional explosives, referred to as a 'dirty bomb', could create considerable panic, disruption and area access denial in an urban environment. However, as it is still a relatively new topic among regulators, users, and transport and storage operators worldwide, international assistance and cooperation in developing the necessary regulatory and security infrastructure is required. The most important action in reducing the risk of radiological terrorism is to increase the security of radioactive sources. This paper presents safety and security considerations for the transport and site storage of the industrial radiography sources as per national regulations entitled 'Nuclear Safety and Radiation Control Rules-1997'.The main emphasis was put on the stages of some safety and security actions in order to prevent theft, sabotage or other malicious acts during the transport of the packages. As a conclusion it must be mentioned that both safety and security considerations are very important aspects that must be taking in account for the transport and site storage of radioactive sources used in the practice of industrial radiography. (authors)

  13. Open-source solutions for SPIMage processing.

    PubMed

    Schmied, Christopher; Stamataki, Evangelia; Tomancak, Pavel

    2014-01-01

    Light sheet microscopy is an emerging technique allowing comprehensive visualization of dynamic biological processes, at high spatial and temporal resolution without significant damage to the sample by the imaging process itself. It thus lends itself to time-lapse observation of fluorescently labeled molecular markers over long periods of time in a living specimen. In combination with sample rotation light sheet microscopy and in particular its selective plane illumination microscopy (SPIM) flavor, enables imaging of relatively large specimens, such as embryos of animal model organisms, in their entirety. The benefits of SPIM multiview imaging come to the cost of image data postprocessing necessary to deliver the final output that can be analyzed. Here, we provide a set of practical recipes that walk biologists through the complex processes of SPIM data registration, fusion, deconvolution, and time-lapse registration using publicly available open-source tools. We explain, in plain language, the basic principles behind SPIM image-processing algorithms that should enable users to make informed decisions during parameter tuning of the various processing steps applied to their own datasets. Importantly, the protocols presented here are applicable equally to processing of multiview SPIM data from the commercial Zeiss Lightsheet Z.1 microscope and from the open-access SPIM platforms such as OpenSPIM. © 2014 Elsevier Inc. All rights reserved.

  14. The open-source neuroimaging research enterprise.

    PubMed

    Marcus, Daniel S; Archie, Kevin A; Olsen, Timothy R; Ramaratnam, Mohana

    2007-11-01

    While brain imaging in the clinical setting is largely a practice of looking at images, research neuroimaging is a quantitative and integrative enterprise. Images are run through complex batteries of processing and analysis routines to generate numeric measures of brain characteristics. Other measures potentially related to brain function - demographics, genetics, behavioral tests, neuropsychological tests - are key components of most research studies. The canonical scanner - PACS - viewing station axis used in clinical practice is therefore inadequate for supporting neuroimaging research. Here, we model the neuroimaging research enterprise as a workflow. The principal components of the workflow include data acquisition, data archiving, data processing and analysis, and data utilization. We also describe a set of open-source applications to support each step of the workflow and the transitions between these steps. These applications include DIGITAL IMAGING AND COMMUNICATIONS IN MEDICINE viewing and storage tools, the EXTENSIBLE NEUROIMAGING ARCHIVE TOOLKIT data archiving and exploration platform, and an engine for running processing/analysis pipelines. The overall picture presented is aimed to motivate open-source developers to identify key integration and communication points for interoperating with complimentary applications.

  15. Spatial rainfall data in open source environment

    NASA Astrophysics Data System (ADS)

    Schuurmans, Hanneke; Maarten Verbree, Jan; Leijnse, Hidde; van Heeringen, Klaas-Jan; Uijlenhoet, Remko; Bierkens, Marc; van de Giesen, Nick; Gooijer, Jan; van den Houten, Gert

    2013-04-01

    Since January 2013 The Netherlands have access to innovative high-quality rainfall data that is used for watermanagers. This product is innovative because of the following reasons. (i) The product is developed in a 'golden triangle' construction - corporation between government, business and research. (ii) Second the rainfall products are developed according to the open-source GPL license. The initiative comes from a group of water boards in the Netherlands that joined their forces to fund the development of a new rainfall product. Not only data from Dutch radar stations (as is currently done by the Dutch meteorological organization KNMI) is used but also data from radars in Germany and Belgium. After a radarcomposite is made, it is adjusted according to data from raingauges (ground truth). This results in 9 different rainfall products that give for each moment the best rainfall data. Specific knowledge is necessary to develop these kind of data. Therefore a pool of experts (KNMI, Deltares and 3 universities) participated in the development. The philosophy of the developers (being corporations) is that products like this should be developed in open source. This way knowledge is shared and the whole community is able to make suggestions for improvement. In our opinion this is the only way to make real progress in product development. Furthermore the financial resources of government organizations are optimized. More info (in Dutch): www.nationaleregenradar.nl

  16. Laser Ion Source Operation at the TRIUMF Radioactive Ion Beam Facility

    SciTech Connect

    Lassen, J.; Bricault, P.; Dombsky, M.; Lavoie, J. P.; Gillner, M.; Hellbusch, F.; Teigelhoefer, A.; Voss, A.; Gottwald, T.; Wendt, K. D. A.

    2009-03-17

    The TRIUMF Resonant Ionization Laser Ion Source (RILIS) for radioactive ion beam production is presented, with target ion source, laser beam transport, laser system and operation. In this context aspects of titanium sapphire (TiSa) laser based RILIS and facility requirements are discussed and results from the first years of TRILIS RIB delivery are given.

  17. Management of Ir-192 Disused Sealed Sources with Long-Lived Radioactive Contaminants

    SciTech Connect

    Dellamano, Jose Claudio; Ferreira, Robson de Jesus; Potiens, Ademar Jose Jr.; Vicente, Roberto

    2015-07-01

    Iridium-192 sealed sources are the most widely used sealed source in industrial applications in Brazil. They are not recyclable and in the end of the useful life, they are discarded as radioactive waste. The recommended management strategy of this waste is decay in storage and disposal as exempt waste because the half-life is only 73.8 days. Presently, thousands of Ir- 192 sources are under storage waiting release. Surprisingly, sources that were under storage for more than ten years and for which no measurable contact dose rate was expected still present significant remaining radioactivity. The examination of the gamma spectra of these sources showed the presence of Co-60 and the gamma emission lines from the Ir-192m2 isomer, the metastable isotope with half-life of 241 years, which is also formed by the irradiation of natural iridium. The aim of the study reported in this paper is to characterize the Ir-192 disused sources under interim storage at the Radioactive Waste Management Department, considering the presence of minor contaminants in the irradiated iridium and the fraction of the total initial activity of the sources that is attributable to that metastable isotope. The radioactive inventories at the end of the irradiation and after the decay period were predicted using the Scale 6.0 code and the results were compared with activity measurements of the disused sources by gamma spectrometry. (authors)

  18. An ion source module for the Beijing Radioactive Ion-beam Facility

    NASA Astrophysics Data System (ADS)

    Cui, B.; Huang, Q.; Tang, B.; Ma, R.; Chen, L.; Ma, Y.

    2014-02-01

    An ion source module is developed for Beijing Radioactive Ion-beam Facility. The ion source module is designed to meet the requirements of remote handling. The connection and disconnection of the electricity, cooling and vacuum between the module and peripheral units can be executed without on-site manual work. The primary test of the target ion source has been carried out and a Li+ beam has been extracted. Details of the ion source module and its primary test results are described.

  19. Open Source Hardware for DIY Environmental Sensing

    NASA Astrophysics Data System (ADS)

    Aufdenkampe, A. K.; Hicks, S. D.; Damiano, S. G.; Montgomery, D. S.

    2014-12-01

    The Arduino open source electronics platform has been very popular within the DIY (Do It Yourself) community for several years, and it is now providing environmental science researchers with an inexpensive alternative to commercial data logging and transmission hardware. Here we present the designs for our latest series of custom Arduino-based dataloggers, which include wireless communication options like self-meshing radio networks and cellular phone modules. The main Arduino board uses a custom interface board to connect to various research-grade sensors to take readings of turbidity, dissolved oxygen, water depth and conductivity, soil moisture, solar radiation, and other parameters. Sensors with SDI-12 communications can be directly interfaced to the logger using our open Arduino-SDI-12 software library (https://github.com/StroudCenter/Arduino-SDI-12). Different deployment options are shown, like rugged enclosures to house the loggers and rigs for mounting the sensors in both fresh water and marine environments. After the data has been collected and transmitted by the logger, the data is received by a mySQL-PHP stack running on a web server that can be accessed from anywhere in the world. Once there, the data can be visualized on web pages or served though REST requests and Water One Flow (WOF) services. Since one of the main benefits of using open source hardware is the easy collaboration between users, we are introducing a new web platform for discussion and sharing of ideas and plans for hardware and software designs used with DIY environmental sensors and data loggers.

  20. Application of radioactive sources in analytical instruments for planetary exploration.

    PubMed

    Economou, Thanasis E

    2010-01-01

    Radioactive isotopes have been used in analytical instrumentation for planetary exploration since the very beginning of the space age. An Alpha Scattering Instrument (ASI) on board the Surveyor 5, 6 and 7 spacecrafts used the isotope (242)Cm to obtain the chemical composition of the lunar surface material in 1960s. The Alpha Proton X-ray Spectrometers (APXS) used on several mission to Mars (Pathfinder, Mars-96, Mars Exploration Rovers (MER) and on the Mars Science Laboratory (MSL), the next mission to Mars in 2011 and on the Rosetta mission to a comet) are improved derivatives of the original ASI, complimented with an X-ray mode and using the longer lived (244)Cm isotope. (57)Co, (55)Fe and many other radioisotopes have been used in several missions carrying XRF and Mössbauer instruments. In addition, (238)Pu isotope is exclusively being used in most of the space missions for heating and power generation. Copyright 2009. Published by Elsevier Ltd.

  1. Open Source Service Agent (OSSA) in the intelligence community's Open Source Architecture

    NASA Technical Reports Server (NTRS)

    Fiene, Bruce F.

    1994-01-01

    The Community Open Source Program Office (COSPO) has developed an architecture for the intelligence community's new Open Source Information System (OSIS). The architecture is a multi-phased program featuring connectivity, interoperability, and functionality. OSIS is based on a distributed architecture concept. The system is designed to function as a virtual entity. OSIS will be a restricted (non-public), user configured network employing Internet communications. Privacy and authentication will be provided through firewall protection. Connection to OSIS can be made through any server on the Internet or through dial-up modems provided the appropriate firewall authentication system is installed on the client.

  2. A Study of Clinically Related Open Source Software Projects

    PubMed Central

    Hogarth, Michael A.; Turner, Stuart

    2005-01-01

    Open source software development has recently gained significant interest due to several successful mainstream open source projects. This methodology has been proposed as being similarly viable and beneficial in the clinical application domain as well. However, the clinical software development venue differs significantly from the mainstream software venue. Existing clinical open source projects have not been well characterized nor formally studied so the ‘fit’ of open source in this domain is largely unknown. In order to better understand the open source movement in the clinical application domain, we undertook a study of existing open source clinical projects. In this study we sought to characterize and classify existing clinical open source projects and to determine metrics for their viability. This study revealed several findings which we believe could guide the healthcare community in its quest for successful open source clinical software projects. PMID:16779056

  3. Safety and security management of disused sealed radioactive sources in Thailand

    NASA Astrophysics Data System (ADS)

    Ya-anant, N.; Nuanjan, P.; Phattanasub, A.; Akharawutchayanon, T.; O-manee, A.; Prasertchiewchan, N.; Benitez-Navarro, J. C.

    2015-05-01

    When sealed radioactive sources are no longer in use, they should be returned back to the country of origin. However, most of them could not be returned to the origin; therefore, disused sealed radioactive sources (DSRS) have to be managed locally to ensure the safety and the security for long term storage before final disposal. The Radioactive Waste Management Center, Thailand Institute of Nuclear Technology, is authorized to operate the treatment, conditioning and storage of DSRS in Thailand. This paper will describe the operational procedures on characterization technique, identifation of unknown sources, volume reduction technique, re-packaging, registration and record keeping of DSRS. The successful results included that the record keeping of DSRS has been developed, and the national inventory of stored DSRS has been made up to date. The results confirmed that the quality control at the DSRS storage facility at Thailand Institute of Nuclear Technology was established and well implemented to ensure safe and secure management.

  4. An open source simulator for water management

    NASA Astrophysics Data System (ADS)

    Knox, Stephen; Meier, Philipp; Selby, Philip; Mohammed, Khaled; Khadem, Majed; Padula, Silvia; Harou, Julien; Rosenberg, David; Rheinheimer, David

    2015-04-01

    Descriptive modelling of water resource systems requires the representation of different aspects in one model: the physical system including hydrological inputs and engineered infrastructure, and human management, including social, economic and institutional behaviours and constraints. Although most water resource systems share some characteristics such as the ability to represent them as a network of nodes and links, geographical, institutional and other differences mean that invariably each water system functions in a unique way. A diverse group is developing an open source simulation framework which will allow model developers to build generalised water management models that are customised to the institutional, physical and economical components they are seeking to model. The framework will allow the simulation of complex individual and institutional behaviour required for the assessment of real-world resource systems. It supports the spatial and hierarchical structures commonly found in water resource systems. The individual infrastructures can be operated by different actors while policies are defined at a regional level by one or more institutional actors. The framework enables building multi-agent system simulators in which developers can define their own agent types and add their own decision making code. Developers using the framework have two main tasks: (i) Extend the core classes to represent the aspects of their particular system, and (ii) write model structure files. Both are done in Python. For task one, users must either write new decision making code for each class or link to an existing code base to provide functionality to each of these extension classes. The model structure file links these extension classes in a standardised way to the network topology. The framework will be open-source and written in Python and is to be available directly for download through standard installer packages. Many water management model developers are unfamiliar

  5. Behind Linus's Law: Investigating Peer Review Processes in Open Source

    ERIC Educational Resources Information Center

    Wang, Jing

    2013-01-01

    Open source software has revolutionized the way people develop software, organize collaborative work, and innovate. The numerous open source software systems that have been created and adopted over the past decade are influential and vital in all aspects of work and daily life. The understanding of open source software development can enhance its…

  6. An Analysis of Open Source Security Software Products Downloads

    ERIC Educational Resources Information Center

    Barta, Brian J.

    2014-01-01

    Despite the continued demand for open source security software, a gap in the identification of success factors related to the success of open source security software persists. There are no studies that accurately assess the extent of this persistent gap, particularly with respect to the strength of the relationships of open source software…

  7. The Open Source Teaching Project (OSTP): Research Note.

    ERIC Educational Resources Information Center

    Hirst, Tony

    The Open Source Teaching Project (OSTP) is an attempt to apply a variant of the successful open source software approach to the development of educational materials. Open source software is software licensed in such a way as to allow anyone the right to modify and use it. From such a simple premise, a whole industry has arisen, most notably in the…

  8. Behind Linus's Law: Investigating Peer Review Processes in Open Source

    ERIC Educational Resources Information Center

    Wang, Jing

    2013-01-01

    Open source software has revolutionized the way people develop software, organize collaborative work, and innovate. The numerous open source software systems that have been created and adopted over the past decade are influential and vital in all aspects of work and daily life. The understanding of open source software development can enhance its…

  9. An Analysis of Open Source Security Software Products Downloads

    ERIC Educational Resources Information Center

    Barta, Brian J.

    2014-01-01

    Despite the continued demand for open source security software, a gap in the identification of success factors related to the success of open source security software persists. There are no studies that accurately assess the extent of this persistent gap, particularly with respect to the strength of the relationships of open source software…

  10. The Emergence of Open-Source Software in North America

    ERIC Educational Resources Information Center

    Pan, Guohua; Bonk, Curtis J.

    2007-01-01

    Unlike conventional models of software development, the open source model is based on the collaborative efforts of users who are also co-developers of the software. Interest in open source software has grown exponentially in recent years. A "Google" search for the phrase open source in early 2005 returned 28.8 million webpage hits, while…

  11. Development of Approach for Long-Term Management of Disused Sealed Radioactive Sources - 13630

    SciTech Connect

    Kinker, M.; Reber, E.; Mansoux, H.; Bruno, G.

    2013-07-01

    Radioactive sources are used widely throughout the world in a variety of medical, industrial, research and military applications. When such radioactive sources are no longer used and are not intended to be used for the practice for which an authorization was granted, they are designated as 'disused sources'. Whether appropriate controls are in place during the useful life of a source or not, the end of this useful life is often a turning point after which it is more difficult to ensure the safety and security of the source over time. For various reasons, many disused sources cannot be returned to the manufacturer or the supplier for reuse or recycling. When these attempts fail, disused sources should be declared as radioactive waste and should be managed as such, in compliance with relevant international legal instruments and safety standards. However, disposal remains an unresolved issue in many counties, due to in part to limited public acceptance, insufficient funding, and a lack of practical examples of strategies for determining suitable disposal options. As a result, disused sources are often stored indefinitely at the facilities where they were once used. In order to prevent disused sources from becoming orphan sources, each country must develop and implement a comprehensive waste management strategy that includes disposal of disused sources. The International Atomic Energy Agency (IAEA) fosters international cooperation between countries and encourages the development of a harmonized 'cradle to grave' approach to managing sources consistent with international legal instruments, IAEA safety standards, and international good practices. This 'cradle to grave' approach requires the development of a national policy and implementing strategy, an adequate legal and regulatory framework, and adequate resources and infrastructure that cover the entire life cycle, from production and use of radioactive sources to disposal. (authors)

  12. Open-Source Instructional Materials in Astronomy

    NASA Astrophysics Data System (ADS)

    Robertson, T. H.

    2004-12-01

    Instructional materials are being developed in an open-source environment for introductory astronomy courses. These materials are being developed on, and will be available through, the LON-CAPA network accessed through the internet. Advantages of this system, which include materials sharing, free-software, search capabilities, context sensitive help and branching, metadata and on-line evaluation, will be discussed. Materials developed to date are limited primarily to personalized homework with a variety of question types for large (n = 100 student) classes at the Astronomy 101 and algebra-based astronomy levels. A progress report, as well as preliminary assessment data, will be provided on the scope of materials developed to date. Plans for future expansion will be presented. This work was funded in part by grants from Ball State University.

  13. An Affordable Open-Source Turbidimeter

    PubMed Central

    Kelley, Christopher D.; Krolick, Alexander; Brunner, Logan; Burklund, Alison; Kahn, Daniel; Ball, William P.; Weber-Shirk, Monroe

    2014-01-01

    Turbidity is an internationally recognized criterion for assessing drinking water quality, because the colloidal particles in turbid water may harbor pathogens, chemically reduce oxidizing disinfectants, and hinder attempts to disinfect water with ultraviolet radiation. A turbidimeter is an electronic/optical instrument that assesses turbidity by measuring the scattering of light passing through a water sample containing such colloidal particles. Commercial turbidimeters cost hundreds or thousands of dollars, putting them beyond the reach of low-resource communities around the world. An affordable open-source turbidimeter based on a single light-to-frequency sensor was designed and constructed, and evaluated against a portable commercial turbidimeter. The final product, which builds on extensive published research, is intended to catalyze further developments in affordable water and sanitation monitoring. PMID:24759114

  14. Preparation of a deuterated polymer: Simulating to produce a solid tritium radioactive source

    NASA Astrophysics Data System (ADS)

    Hu, Rui; Kan, Wentao; Xiong, Xiaoling; Wei, Hongyuan

    2017-08-01

    The preparation of a deuterated polymer was performed in order to simulate the production of the corresponding tritiated polymer as a solid tritium radioactive source. Substitution and addition reaction were used to introduce deuterium into the polymer. Proton nuclear magnetic resonance and FT-IR spectroscopy were used to investigate the extent and location of deuterium in the polymer, indicating an effectively deuterated polymer was produced. The thermal analysis showed that the final polymer product could tolerate the environmental temperature below 125 °C in its application. This research provides a prosperous method to prepare solid tritium radioactive source.

  15. Safety regulation for the design approval of special form radioactive sources.

    PubMed

    Cho, Woon-Kap

    2009-01-01

    Several kinds of special form radioactive sources for industrial, medical applications are being produced in Korea. Special form radioactive sources should meet strict safety requirements specified in the domestic safety regulations and the design of the sources should be certified by the regulatory authority, the Ministry of Education, Science and Technology (MEST). Several safety tests such as impact, percussion, heating, and leak tests are performed on the sources according to the domestic regulations and the international safety standards such as ANSI N542-1977 and ISO 2919-1999(E). As a regulatory expert body, Korea Institute of Nuclear Safety (KINS) assesses various types of application documents, such as safety analysis report, quality assurance program, and other documents evidencing fulfillment of requirements for design approval of the special form radioactive sources, submitted by a legal person who intends to produce special form radioactive sources and then reports the assessment result to MEST. A design approval certificate is issued to the applicant by MEST on the basis of a technical evaluation report presented by KINS.

  16. Conditioning and Repackaging of Spent Radioactive Cs-137 and Co-60 Sealed Sources in Egypt - 13490

    SciTech Connect

    Hasan, M.A.; Selim, Y.T.; El-Zakla, T.

    2013-07-01

    Radioactive Sealed sources (RSSs) are widely use all over the world in medicine, agriculture, industry, research, etc. The accidental misuse and exposure to RSSs has caused significant environmental contamination, serious injuries and many deaths. The high specific activity of the materials in many RSSs means that the spread of as little as microgram quantities can generate significant risk to human health and inhibit the use of buildings and land. Conditioning of such sources is a must to protect humans and environment from the hazard of ionizing radiation and contamination. Conditioning is also increase the security of these sources by decreasing the probability of stolen and/or use in terrorist attacks. According to the law No.7/2010, Egyptian atomic energy authority represented in the hot laboratories and waste management center (centralized waste facility, HLWMC) has the responsibility of collecting, conditioning, storing and management of all types of radioactive waste from all Egyptian territory including spent radioactive sealed sources (SRSSs). This paper explains the conditioning procedures for two of the most common SRSSs, Cs{sup 137} and Co{sup 60} sources which make up more than 90% of the total spent radioactive sealed sources stored in our centralized waste facility as one of the major activities of hot laboratories and waste management center. Conditioning has to meet three main objectives, be acceptable for storage, enable their safe transport, and comply with disposal requirements. (authors)

  17. An open source business model for malaria.

    PubMed

    Årdal, Christine; Røttingen, John-Arne

    2015-01-01

    Greater investment is required in developing new drugs and vaccines against malaria in order to eradicate malaria. These precious funds must be carefully managed to achieve the greatest impact. We evaluate existing efforts to discover and develop new drugs and vaccines for malaria to determine how best malaria R&D can benefit from an enhanced open source approach and how such a business model may operate. We assess research articles, patents, clinical trials and conducted a smaller survey among malaria researchers. Our results demonstrate that the public and philanthropic sectors are financing and performing the majority of malaria drug/vaccine discovery and development, but are then restricting access through patents, 'closed' publications and hidden away physical specimens. This makes little sense since it is also the public and philanthropic sector that purchases the drugs and vaccines. We recommend that a more "open source" approach is taken by making the entire value chain more efficient through greater transparency which may lead to more extensive collaborations. This can, for example, be achieved by empowering an existing organization like the Medicines for Malaria Venture (MMV) to act as a clearing house for malaria-related data. The malaria researchers that we surveyed indicated that they would utilize such registry data to increase collaboration. Finally, we question the utility of publicly or philanthropically funded patents for malaria medicines, where little to no profits are available. Malaria R&D benefits from a publicly and philanthropically funded architecture, which starts with academic research institutions, product development partnerships, commercialization assistance through UNITAID and finally procurement through mechanisms like The Global Fund to Fight AIDS, Tuberculosis and Malaria and the U.S.' President's Malaria Initiative. We believe that a fresh look should be taken at the cost/benefit of patents particularly related to new malaria

  18. The Open Source Snowpack modelling ecosystem

    NASA Astrophysics Data System (ADS)

    Bavay, Mathias; Fierz, Charles; Egger, Thomas; Lehning, Michael

    2016-04-01

    As a large number of numerical snow models are available, a few stand out as quite mature and widespread. One such model is SNOWPACK, the Open Source model that is developed at the WSL Institute for Snow and Avalanche Research SLF. Over the years, various tools have been developed around SNOWPACK in order to expand its use or to integrate additional features. Today, the model is part of a whole ecosystem that has evolved to both offer seamless integration and high modularity so each tool can easily be used outside the ecosystem. Many of these Open Source tools experience their own, autonomous development and are successfully used in their own right in other models and applications. There is Alpine3D, the spatially distributed version of SNOWPACK, that forces it with terrain-corrected radiation fields and optionally with blowing and drifting snow. This model can be used on parallel systems (either with OpenMP or MPI) and has been used for applications ranging from climate change to reindeer herding. There is the MeteoIO pre-processing library that offers fully integrated data access, data filtering, data correction, data resampling and spatial interpolations. This library is now used by several other models and applications. There is the SnopViz snow profile visualization library and application that supports both measured and simulated snow profiles (relying on the CAAML standard) as well as time series. This JavaScript application can be used standalone without any internet connection or served on the web together with simulation results. There is the OSPER data platform effort with a data management service (build on the Global Sensor Network (GSN) platform) as well as a data documenting system (metadata management as a wiki). There are several distributed hydrological models for mountainous areas in ongoing development that require very little information about the soil structure based on the assumption that in step terrain, the most relevant information is

  19. Radiation safety attached to radioactive sources management - additional aspects

    SciTech Connect

    Kositsyn, V.F.

    1993-12-31

    Radiation sources are used in many scientific areas. Safety management requirements are determined for them with guarantee of the international and national dose limits unexceeding. As a rule, such dose limits are being developed concerning the type, energy, and flux of main radiation. Lack of knowledge of these attendant radiations can put personnel in danger. The study of the attendant neutron and gamma-radiations for plutonium 128 alpha sources was made.

  20. Developing an Open Source Option for NASA Software

    NASA Technical Reports Server (NTRS)

    Moran, Patrick J.; Parks, John W. (Technical Monitor)

    2003-01-01

    We present arguments in favor of developing an Open Source option for NASA software; in particular we discuss how Open Source is compatible with NASA's mission. We compare and contrast several of the leading Open Source licenses, and propose one - the Mozilla license - for use by NASA. We also address some of the related issues for NASA with respect to Open Source. In particular, we discuss some of the elements in the External Release of NASA Software document (NPG 2210.1A) that will likely have to be changed in order to make Open Source a reality withm the agency.

  1. Quantitative radiochemical methods for determination of the sources of natural radioactivity

    USGS Publications Warehouse

    Rosholt, J.N.

    1957-01-01

    Study of the state of equilibrium of any natural radioactive source requires determination of several key nuclides or groups of nuclides to find their contribution to the total amount of radioactivity. Alpha activity measured by scintillation counting is used for determination of protactinium-231, thorium-232, thorium-230, and radium-226. The chemical procedures for the separations of the specific elements are described, as well as the measurement techniques used to determine the abundances of the individual isotopes. To correct for deviations in the ore standards, an independent means of evaluating the efficiencies of the individual separations and measurements is used. The development of these methods of radiochemical analysis facilitates detailed investigation of the major sources of natural radioactivity.

  2. Fast pulsed operation of a small non-radioactive electron source with continuous emission current control

    SciTech Connect

    Cochems, P.; Kirk, A. T.; Bunert, E.; Runge, M.; Goncalves, P.; Zimmermann, S.

    2015-06-15

    Non-radioactive electron sources are of great interest in any application requiring the emission of electrons at atmospheric pressure, as they offer better control over emission parameters than radioactive electron sources and are not subject to legal restrictions. Recently, we published a simple electron source consisting only of a vacuum housing, a filament, and a single control grid. In this paper, we present improved control electronics that utilize this control grid in order to focus and defocus the electron beam, thus pulsing the electron emission at atmospheric pressure. This allows short emission pulses and excellent stability of the emitted electron current due to continuous control, both during pulsed and continuous operations. As an application example, this electron source is coupled to an ion mobility spectrometer. Here, the pulsed electron source allows experiments on gas phase ion chemistry (e.g., ion generation and recombination kinetics) and can even remove the need for a traditional ion shutter.

  3. Internet as a Source of Misconception: "Radiation and Radioactivity"

    ERIC Educational Resources Information Center

    Acar Sesen, Burcin; Ince, Elif

    2010-01-01

    The purpose of this study is to examine students' usage styles of the Internet for seeking information and to investigate whether information obtained from the Internet is a source of misconceptions. For this reason, a two-stage study was conducted. At the first stage, a questionnaire was developed to get information about students' Internet usage…

  4. Tools for Inspecting and Sampling Waste in Underground Radioactive Storage Tanks with Small Access Riser Openings

    SciTech Connect

    Nance, T.A.

    1998-12-17

    Underground storage tanks with 2 inches to 3 inches diameter access ports at the Department of Energy's Savannah River Site have been used to store radioactive solvents and sludge. In order to close these tanks, the contents of the tanks need to first be quantified in terms of volume and chemical and radioactive characteristics. To provide information on the volume of waste contained within the tanks, a small remote inspection system was needed. This inspection system was designed to provide lighting and provide pan and tilt capabilities in an inexpensive package with zoom abilities and color video. This system also needed to be utilized inside of a plastic tent built over the access port to contain any contamination exiting from the port. This system had to be build to travel into the small port opening, through the riser pipe, into the tank evacuated space, and out of the riser pipe and access port with no possibility of being caught and blocking the access riser. Long thin plates were found in many access riser pipes that blocked the inspection system from penetrating into the tank interiors. Retrieval tools to clear the plates from the tanks using developed sampling devices while providing safe containment for the samples. This paper will discuss the inspection systems, tools for clearing access pipes, and solvent sampling tools developed to evaluate the tank contents of the underground solvent storage tanks.

  5. An Open Source Business Model for Malaria

    PubMed Central

    Årdal, Christine; Røttingen, John-Arne

    2015-01-01

    Greater investment is required in developing new drugs and vaccines against malaria in order to eradicate malaria. These precious funds must be carefully managed to achieve the greatest impact. We evaluate existing efforts to discover and develop new drugs and vaccines for malaria to determine how best malaria R&D can benefit from an enhanced open source approach and how such a business model may operate. We assess research articles, patents, clinical trials and conducted a smaller survey among malaria researchers. Our results demonstrate that the public and philanthropic sectors are financing and performing the majority of malaria drug/vaccine discovery and development, but are then restricting access through patents, ‘closed’ publications and hidden away physical specimens. This makes little sense since it is also the public and philanthropic sector that purchases the drugs and vaccines. We recommend that a more “open source” approach is taken by making the entire value chain more efficient through greater transparency which may lead to more extensive collaborations. This can, for example, be achieved by empowering an existing organization like the Medicines for Malaria Venture (MMV) to act as a clearing house for malaria-related data. The malaria researchers that we surveyed indicated that they would utilize such registry data to increase collaboration. Finally, we question the utility of publicly or philanthropically funded patents for malaria medicines, where little to no profits are available. Malaria R&D benefits from a publicly and philanthropically funded architecture, which starts with academic research institutions, product development partnerships, commercialization assistance through UNITAID and finally procurement through mechanisms like The Global Fund to Fight AIDS, Tuberculosis and Malaria and the U.S.’ President’s Malaria Initiative. We believe that a fresh look should be taken at the cost/benefit of patents particularly related to new

  6. The adequacy of current import and export controls on sealed radioactive sources.

    SciTech Connect

    Longley, Susan W.; Cochran, John Russell; Price, Laura L.; Lipinski, Kendra J.

    2003-10-01

    Millions of sealed radioactive sources (SRSs) are being used for a wide variety of beneficial purposes throughout the world. Security experts are now concerned that these beneficial SRSs could be used in a radiological dispersion device to terrorize and disrupt society. The greatest safety and security threat is from those highly radioactive Category 1 and 2 SRSs. Without adequate controls, it may be relatively easy to legally purchase a Category 1 or 2 SRS on the international market under false pretenses. Additionally, during transfer, SRSs are particularly susceptible to theft since the sources are in a shielded and mobile configuration, transportation routes are predictable, and shipments may not be adequately guarded. To determine if government controls on SRS are adequate, this study was commissioned to review the current SRS import and export controls of six countries. Canada, the Russian Federation, and South Africa were selected as the exporting countries, and Egypt, the Philippines, and the United States were selected as importing countries. A detailed review of the controls in each country is presented. The authors found that Canada and Russia are major exporters, and are exporting highly radioactive SRSs without first determining if the recipient is authorized by the receiving country to own and use the SRSs. Available evidence was used to estimate that on average there are tens to possibly hundreds of intercountry transfers of highly radioactive SRSs each day. Based on these and other findings, this reports recommends stronger controls on the export and import of highly radioactive SRSs.

  7. The successes and challenges of open-source biopharmaceutical innovation.

    PubMed

    Allarakhia, Minna

    2014-05-01

    Increasingly, open-source-based alliances seek to provide broad access to data, research-based tools, preclinical samples and downstream compounds. The challenge is how to create value from open-source biopharmaceutical innovation. This value creation may occur via transparency and usage of data across the biopharmaceutical value chain as stakeholders move dynamically between open source and open innovation. In this article, several examples are used to trace the evolution of biopharmaceutical open-source initiatives. The article specifically discusses the technological challenges associated with the integration and standardization of big data; the human capacity development challenges associated with skill development around big data usage; and the data-material access challenge associated with data and material access and usage rights, particularly as the boundary between open source and open innovation becomes more fluid. It is the author's opinion that the assessment of when and how value creation will occur, through open-source biopharmaceutical innovation, is paramount. The key is to determine the metrics of value creation and the necessary technological, educational and legal frameworks to support the downstream outcomes of now big data-based open-source initiatives. The continued focus on the early-stage value creation is not advisable. Instead, it would be more advisable to adopt an approach where stakeholders transform open-source initiatives into open-source discovery, crowdsourcing and open product development partnerships on the same platform.

  8. Using Radioactive Fallout Cesium (137Cs) to Distinguish Sediment Sources in an Agricultural Watershed

    USDA-ARS?s Scientific Manuscript database

    Radioactive fallout Cesium (Cs-137) has been used for quantifying sources of accumulating sediment in water bodies and to determine the rates and pattern of soil erosion. The objectives of this research are to use Cs-137 as a tracer to determine patterns of soil erosion and deposition of eroding soi...

  9. OpenMx: An Open Source Extended Structural Equation Modeling Framework

    ERIC Educational Resources Information Center

    Boker, Steven; Neale, Michael; Maes, Hermine; Wilde, Michael; Spiegel, Michael; Brick, Timothy; Spies, Jeffrey; Estabrook, Ryne; Kenny, Sarah; Bates, Timothy; Mehta, Paras; Fox, John

    2011-01-01

    OpenMx is free, full-featured, open source, structural equation modeling (SEM) software. OpenMx runs within the "R" statistical programming environment on Windows, Mac OS-X, and Linux computers. The rationale for developing OpenMx is discussed along with the philosophy behind the user interface. The OpenMx data structures are…

  10. OpenMx: An Open Source Extended Structural Equation Modeling Framework

    ERIC Educational Resources Information Center

    Boker, Steven; Neale, Michael; Maes, Hermine; Wilde, Michael; Spiegel, Michael; Brick, Timothy; Spies, Jeffrey; Estabrook, Ryne; Kenny, Sarah; Bates, Timothy; Mehta, Paras; Fox, John

    2011-01-01

    OpenMx is free, full-featured, open source, structural equation modeling (SEM) software. OpenMx runs within the "R" statistical programming environment on Windows, Mac OS-X, and Linux computers. The rationale for developing OpenMx is discussed along with the philosophy behind the user interface. The OpenMx data structures are…

  11. XNAT Central: Open sourcing imaging research data.

    PubMed

    Herrick, Rick; Horton, William; Olsen, Timothy; McKay, Michael; Archie, Kevin A; Marcus, Daniel S

    2016-01-01

    XNAT Central is a publicly accessible medical imaging data repository based on the XNAT open-source imaging informatics platform. It hosts a wide variety of research imaging data sets. The primary motivation for creating XNAT Central was to provide a central repository to host and provide access to a wide variety of neuroimaging data. In this capacity, XNAT Central hosts a number of data sets from research labs and investigative efforts from around the world, including the OASIS Brains imaging studies, the NUSDAST study of schizophrenia, and more. Over time, XNAT Central has expanded to include imaging data from many different fields of research, including oncology, orthopedics, cardiology, and animal studies, but continues to emphasize neuroimaging data. Through the use of XNAT's DICOM metadata extraction capabilities, XNAT Central provides a searchable repository of imaging data that can be referenced by groups, labs, or individuals working in many different areas of research. The future development of XNAT Central will be geared towards greater ease of use as a reference library of heterogeneous neuroimaging data and associated synthetic data. It will also become a tool for making data available supporting published research and academic articles.

  12. An open-source laser electronics suite

    NASA Astrophysics Data System (ADS)

    Pisenti, Neal C.; Reschovsky, Benjamin J.; Barker, Daniel S.; Restelli, Alessandro; Campbell, Gretchen K.

    2016-05-01

    We present an integrated set of open-source electronics for controlling external-cavity diode lasers and other instruments in the laboratory. The complete package includes a low-noise circuit for driving high-voltage piezoelectric actuators, an ultra-stable current controller based on the design of, and a high-performance, multi-channel temperature controller capable of driving thermo-electric coolers or resistive heaters. Each circuit (with the exception of the temperature controller) is designed to fit in a Eurocard rack equipped with a low-noise linear power supply capable of driving up to 5 A at +/- 15 V. A custom backplane allows signals to be shared between modules, and a digital communication bus makes the entire rack addressable by external control software over TCP/IP. The modular architecture makes it easy for additional circuits to be designed and integrated with existing electronics, providing a low-cost, customizable alternative to commercial systems without sacrificing performance.

  13. Open source integrated modeling environment Delta Shell

    NASA Astrophysics Data System (ADS)

    Donchyts, G.; Baart, F.; Jagers, B.; van Putten, H.

    2012-04-01

    In the last decade, integrated modelling has become a very popular topic in environmental modelling since it helps solving problems, which is difficult to model using a single model. However, managing complexity of integrated models and minimizing time required for their setup remains a challenging task. The integrated modelling environment Delta Shell simplifies this task. The software components of Delta Shell are easy to reuse separately from each other as well as a part of integrated environment that can run in a command-line or a graphical user interface mode. The most components of the Delta Shell are developed using C# programming language and include libraries used to define, save and visualize various scientific data structures as well as coupled model configurations. Here we present two examples showing how Delta Shell simplifies process of setting up integrated models from the end user and developer perspectives. The first example shows coupling of a rainfall-runoff, a river flow and a run-time control models. The second example shows how coastal morphological database integrates with the coastal morphological model (XBeach) and a custom nourishment designer. Delta Shell is also available as open-source software released under LGPL license and accessible via http://oss.deltares.nl.

  14. Electron capture radioactive sources for intravascular brachytherapy: a feasibility study.

    PubMed

    von Neumann-Cosel, Peter

    2003-06-21

    The feasibility of electron capture (EC) radionuclides as an alternative to the beta and high-energy gamma emitters presently in use for intravascular brachytherapy is investigated. A potential advantage of the low-energy x-ray radiation from EC isotopes may be an enhanced biological effectiveness with respect to the presently applied beta nuclides, but at the same time avoiding the shielding problems induced by the large penetrability of high-energy gamma rays. A survey considering the most important practical aspects such as dose delivery to the vessel walls in reasonable time spans, absorption properties, possible production of sources with the required specific activities and radiation safety reveals 71Ge as the most promising candidate.

  15. The 2015 Bioinformatics Open Source Conference (BOSC 2015).

    PubMed

    Harris, Nomi L; Cock, Peter J A; Lapp, Hilmar; Chapman, Brad; Davey, Rob; Fields, Christopher; Hokamp, Karsten; Munoz-Torres, Monica

    2016-02-01

    The Bioinformatics Open Source Conference (BOSC) is organized by the Open Bioinformatics Foundation (OBF), a nonprofit group dedicated to promoting the practice and philosophy of open source software development and open science within the biological research community. Since its inception in 2000, BOSC has provided bioinformatics developers with a forum for communicating the results of their latest efforts to the wider research community. BOSC offers a focused environment for developers and users to interact and share ideas about standards; software development practices; practical techniques for solving bioinformatics problems; and approaches that promote open science and sharing of data, results, and software. BOSC is run as a two-day special interest group (SIG) before the annual Intelligent Systems in Molecular Biology (ISMB) conference. BOSC 2015 took place in Dublin, Ireland, and was attended by over 125 people, about half of whom were first-time attendees. Session topics included "Data Science;" "Standards and Interoperability;" "Open Science and Reproducibility;" "Translational Bioinformatics;" "Visualization;" and "Bioinformatics Open Source Project Updates". In addition to two keynote talks and dozens of shorter talks chosen from submitted abstracts, BOSC 2015 included a panel, titled "Open Source, Open Door: Increasing Diversity in the Bioinformatics Open Source Community," that provided an opportunity for open discussion about ways to increase the diversity of participants in BOSC in particular, and in open source bioinformatics in general. The complete program of BOSC 2015 is available online at http://www.open-bio.org/wiki/BOSC_2015_Schedule.

  16. Radioactive source localization inside pipes using a long-range alpha detector

    NASA Astrophysics Data System (ADS)

    Wu, Xue-Mei; Tuo, Xian-Guo; Li, Zhe; Liu, Ming-Zhe; Zhang, Jin-Zhao; Dong, Xiang-Long; Li, Ping-Chuan

    2013-08-01

    Long-range alpha detectors (LRADs) are attracting much attention in the decommissioning of nuclear facilities because of some problems in obtaining source positions on an interior surface during pipe decommissioning. By utilizing the characteristic that LRAD detects alphas by collecting air-driving ions, this article applies a method to localize the radioactive source by ions' fluid property. By obtaining the ion travel time and the airspeed distribution in the pipe, the source position can be determined. Thus this method overcomes the ion's lack of periodic characteristics. Experimental results indicate that this method can approximately localize the source inside the pipe. The calculation results are in good agreement with the experimental results.

  17. ENKI - An Open Source environmental modelling platfom

    NASA Astrophysics Data System (ADS)

    Kolberg, S.; Bruland, O.

    2012-04-01

    The ENKI software framework for implementing spatio-temporal models is now released under the LGPL license. Originally developed for evaluation and comparison of distributed hydrological model compositions, ENKI can be used for simulating any time-evolving process over a spatial domain. The core approach is to connect a set of user specified subroutines into a complete simulation model, and provide all administrative services needed to calibrate and run that model. This includes functionality for geographical region setup, all file I/O, calibration and uncertainty estimation etc. The approach makes it easy for students, researchers and other model developers to implement, exchange, and test single routines and various model compositions in a fixed framework. The open-source license and modular design of ENKI will also facilitate rapid dissemination of new methods to institutions engaged in operational water resource management. ENKI uses a plug-in structure to invoke separately compiled subroutines, separately built as dynamic-link libraries (dlls). The source code of an ENKI routine is highly compact, with a narrow framework-routine interface allowing the main program to recognise the number, types, and names of the routine's variables. The framework then exposes these variables to the user within the proper context, ensuring that distributed maps coincide spatially, time series exist for input variables, states are initialised, GIS data sets exist for static map data, manually or automatically calibrated values for parameters etc. By using function calls and memory data structures to invoke routines and facilitate information flow, ENKI provides good performance. For a typical distributed hydrological model setup in a spatial domain of 25000 grid cells, 3-4 time steps simulated per second should be expected. Future adaptation to parallel processing may further increase this speed. New modifications to ENKI include a full separation of API and user interface

  18. German Support Program for Retrieval and Safe Storage of Disused Radioactive Sealed Sources in Ukraine - 13194

    SciTech Connect

    Pretzsch, Gunter; Salewski, Peter; Sogalla, Martin

    2013-07-01

    The German Federal Ministry for the Environment, Nature Conservation and Nuclear Safety (BMU) on behalf of the Government of the Federal Republic of Germany supports the State Nuclear Regulatory Inspectorate of Ukraine (SNRIU) in enhancement of nuclear safety and radiation protection and strengthening of the physical protection. One of the main objectives of the agreement concluded by these parties in 2008 was the retrieval and safe interim storage of disused orphan high radioactive sealed sources in Ukraine. At present, the Ukrainian National Registry does not account all high active radiation sources but only for about 70 - 80 %. GRS in charge of BMU to execute the program since 2008 concluded subcontracts with the waste management and interim storage facilities RADON at different regions in Ukraine as well with the waste management and interim storage facility IZOTOP at Kiev. Below selected examples of removal of high active Co-60 and Cs-137 sources from irradiation facilities at research institutes are described. By end of 2012 removal and safe interim storage of 12.000 disused radioactive sealed sources with a total activity of more than 5,7.10{sup 14} Bq was achieved within the frame of this program. The German support program will be continued up to the end of 2013 with the aim to remove and safely store almost all disused radioactive sealed sources in Ukraine. (authors)

  19. The GPS Toolkit: Open Source Clock Tools

    DTIC Science & Technology

    2008-12-01

    gnuplot . ALLANPLOT (allanplot) allanplot is a Python plotting script. The script opens an interface that allows the user to view the plot and a...Allan deviation. The script opens a gnuplot window with the input data plotted. The x, y, and z axis are plotted logarithmically, with x and y

  20. Study on effect of geometrical configuration of radioactive source material to the radiation intensity of betavoltaic nuclear battery

    NASA Astrophysics Data System (ADS)

    Badrianto, Muldani Dwi; Riupassa, Robi D.; Basar, Khairul

    2015-09-01

    Nuclear batteries have strategic applications and very high economic potential. One Important problem in application of nuclear betavoltaic battery is its low efficiency. Current efficiency of betavoltaic nuclear battery reaches only arround 2%. One aspect that can influence the efficiency of betavoltaic nuclear battery is the geometrical configuration of radioactive source. In this study we discuss the effect of geometrical configuration of radioactive source material to the radiation intensity in betavoltaic nuclear battery system. received by the detector. By obtaining the optimum configurations, the optimum usage of radioactive materials can be determined. Various geometrical configurations of radioactive source material are simulated. It is obtained that usage of radioactive source will be optimum for circular configuration.

  1. Study on effect of geometrical configuration of radioactive source material to the radiation intensity of betavoltaic nuclear battery

    SciTech Connect

    Badrianto, Muldani Dwi; Riupassa, Robi D.; Basar, Khairul

    2015-09-30

    Nuclear batteries have strategic applications and very high economic potential. One Important problem in application of nuclear betavoltaic battery is its low efficiency. Current efficiency of betavoltaic nuclear battery reaches only arround 2%. One aspect that can influence the efficiency of betavoltaic nuclear battery is the geometrical configuration of radioactive source. In this study we discuss the effect of geometrical configuration of radioactive source material to the radiation intensity in betavoltaic nuclear battery system. received by the detector. By obtaining the optimum configurations, the optimum usage of radioactive materials can be determined. Various geometrical configurations of radioactive source material are simulated. It is obtained that usage of radioactive source will be optimum for circular configuration.

  2. The case for open-source software in drug discovery.

    PubMed

    DeLano, Warren L

    2005-02-01

    Widespread adoption of open-source software for network infrastructure, web servers, code development, and operating systems leads one to ask how far it can go. Will "open source" spread broadly, or will it be restricted to niches frequented by hopeful hobbyists and midnight hackers? Here we identify reasons for the success of open-source software and predict how consumers in drug discovery will benefit from new open-source products that address their needs with increased flexibility and in ways complementary to proprietary options.

  3. Open-Source Data and the Study of Homicide.

    PubMed

    Parkin, William S; Gruenewald, Jeff

    2015-07-20

    To date, no discussion has taken place in the social sciences as to the appropriateness of using open-source data to augment, or replace, official data sources in homicide research. The purpose of this article is to examine whether open-source data have the potential to be used as a valid and reliable data source in testing theory and studying homicide. Official and open-source homicide data were collected as a case study in a single jurisdiction over a 1-year period. The data sets were compared to determine whether open-sources could recreate the population of homicides and variable responses collected in official data. Open-source data were able to replicate the population of homicides identified in the official data. Also, for every variable measured, the open-sources captured as much, or more, of the information presented in the official data. Also, variables not available in official data, but potentially useful for testing theory, were identified in open-sources. The results of the case study show that open-source data are potentially as effective as official data in identifying individual- and situational-level characteristics, provide access to variables not found in official homicide data, and offer geographic data that can be used to link macro-level characteristics to homicide events. © The Author(s) 2015.

  4. Efficient Open Source Lidar for Desktop Users

    NASA Astrophysics Data System (ADS)

    Flanagan, Jacob P.

    Lidar --- Light Detection and Ranging --- is a remote sensing technology that utilizes a device similar to a rangefinder to determine a distance to a target. A laser pulse is shot at an object and the time it takes for the pulse to return in measured. The distance to the object is easily calculated using the speed property of light. For lidar, this laser is moved (primarily in a rotational movement usually accompanied by a translational movement) and records the distances to objects several thousands of times per second. From this, a 3 dimensional structure can be procured in the form of a point cloud. A point cloud is a collection of 3 dimensional points with at least an x, a y and a z attribute. These 3 attributes represent the position of a single point in 3 dimensional space. Other attributes can be associated with the points that include properties such as the intensity of the return pulse, the color of the target or even the time the point was recorded. Another very useful, post processed attribute is point classification where a point is associated with the type of object the point represents (i.e. ground.). Lidar has gained popularity and advancements in the technology has made its collection easier and cheaper creating larger and denser datasets. The need to handle this data in a more efficiently manner has become a necessity; The processing, visualizing or even simply loading lidar can be computationally intensive due to its very large size. Standard remote sensing and geographical information systems (GIS) software (ENVI, ArcGIS, etc.) was not originally built for optimized point cloud processing and its implementation is an afterthought and therefore inefficient. Newer, more optimized software for point cloud processing (QTModeler, TopoDOT, etc.) usually lack more advanced processing tools, requires higher end computers and are very costly. Existing open source lidar approaches the loading and processing of lidar in an iterative fashion that requires

  5. 10 CFR Appendix E to Part 835 - Values for Establishing Sealed Radioactive Source Accountability and Radioactive Material Posting...

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... Accountability and Radioactive Material Posting and Labeling Requirements E Appendix E to Part 835 Energy DEPARTMENT OF ENERGY OCCUPATIONAL RADIATION PROTECTION Pt. 835, App. E Appendix E to Part 835—Values for... Requirements The data presented in appendix E are to be used for identifying accountable sealed radioactive...

  6. 10 CFR Appendix E to Part 835 - Values for Establishing Sealed Radioactive Source Accountability and Radioactive Material Posting...

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... Accountability and Radioactive Material Posting and Labeling Requirements E Appendix E to Part 835 Energy DEPARTMENT OF ENERGY OCCUPATIONAL RADIATION PROTECTION Pt. 835, App. E Appendix E to Part 835—Values for... Requirements The data presented in appendix E are to be used for identifying accountable sealed radioactive...

  7. Management of Disused Radioactive Sealed Sources in the Slovak Republic - 12100

    SciTech Connect

    Salzer, Peter

    2012-07-01

    After splitting-up the Czechoslovak Federation in 1993, the system of management of institutional radioactive waste, where disused sources represent its significant part, had had to build from beginning, since all corresponding activities had remained in the Czech part of the Federation. The paper presents the development of legislative and institutional framework of the disused radioactive sealed source management, development of the national inventory and development of management practices. According the Governmental decision (1994), the management of disused sealed sources and institutional radioactive waste at whole was based on maximal utilization of facilities inside nuclear facilities, particularly in the NPP A1 (shut down in the past, currently under decommissioning). This approach has been recently changing by Governmental decision (2009) to construct 'non-nuclear facility' - central storage for remained disused sealed sources collected from the places of use, where they were stored in some cases for tens of years. The approaches to siting and construction of this storage facility will be presented, as well as the current approaches to solution of the disused radioactive sources final disposal. Environmental impact assessment process in regard to the given facility/activity is slowly drawing to a close. The final statement of the Ministry of Environment can be expected in January or February 2012, probably recommending option 1 as preferred [6]. According to the Slovak legislation, the final statement has a status of recommendation for ongoing processes leading to the siting license. Very recently, in December 2012, Government of the Slovak republic decided to postpone putting the facility into operation by the end of June, 2014. (author)

  8. A compact ultra-clean system for deploying radioactive sources inside the KamLAND detector

    NASA Astrophysics Data System (ADS)

    Banks, T. I.; Freedman, S. J.; Wallig, J.; Ybarrolaza, N.; Gando, A.; Gando, Y.; Ikeda, H.; Inoue, K.; Kishimoto, Y.; Koga, M.; Mitsui, T.; Nakamura, K.; Shimizu, I.; Shirai, J.; Suzuki, A.; Takemoto, Y.; Tamae, K.; Ueshima, K.; Watanabe, H.; Xu, B. D.; Yoshida, H.; Yoshida, S.; Kozlov, A.; Grant, C.; Keefer, G.; Piepke, A.; Bloxham, T.; Fujikawa, B. K.; Han, K.; Ichimura, K.; Murayama, H.; O`Donnell, T.; Steiner, H. M.; Winslow, L. A.; Dwyer, D. A.; McKeown, R. D.; Zhang, C.; Berger, B. E.; Lane, C. E.; Maricic, J.; Miletic, T.; Batygov, M.; Learned, J. G.; Matsuno, S.; Sakai, M.; Horton-Smith, G. A.; Downum, K. E.; Gratta, G.; Efremenko, Y.; Perevozchikov, O.; Karwowski, H. J.; Markoff, D. M.; Tornow, W.; Heeger, K. M.; Detwiler, J. A.; Enomoto, S.; Decowski, M. P.

    2015-01-01

    We describe a compact, ultra-clean device used to deploy radioactive sources along the vertical axis of the KamLAND liquid-scintillator neutrino detector for purposes of calibration. The device worked by paying out and reeling in precise lengths of a hanging, small-gauge wire rope (cable); an assortment of interchangeable radioactive sources could be attached to a weight at the end of the cable. All components exposed to the radiopure liquid scintillator were made of chemically compatible UHV-cleaned materials, primarily stainless steel, in order to avoid contaminating or degrading the scintillator. To prevent radon intrusion, the apparatus was enclosed in a hermetically sealed housing inside a glove box, and both volumes were regularly flushed with purified nitrogen gas. An infrared camera attached to the side of the housing permitted real-time visual monitoring of the cable's motion, and the system was controlled via a graphical user interface.

  9. A compact ultra-clean system for deploying radioactive sources inside the KamLAND detector

    SciTech Connect

    Banks, T. I.; Freedman, S. J.; Wallig, J.; Ybarrolaza, N.; Gando, A.; Gando, Y.; Ikeda, H.; Inoue, K.; Kishimoto, Y.; Koga, M.; Mitsui, T.; Nakamura, K.; Shimizu, I.; Shirai, J.; Suzuki, A.; Takemoto, Y.; Tamae, K.; Ueshima, K.; Watanabe, H.; Xu, B. D.; Yoshida, H.; Yoshida, S.; Kozlov, A.; Grant, C.; Keefer, G.; Piepke, A.; Bloxham, T.; Fujikawa, B. K.; Han, K.; Ichimura, K.; Murayama, H.; O׳Donnell, T.; Steiner, H. M.; Winslow, L. A.; Dwyer, D. A.; McKeown, R. D.; Zhang, C.; Berger, B. E.; Lane, C. E.; Maricic, J.; Miletic, T.; Batygov, M.; Learned, J. G.; Matsuno, S.; Sakai, M.; Horton-Smith, G. A.; Downum, K. E.; Gratta, G.; Efremenko, Y.; Perevozchikov, O.; Karwowski, H. J.; Markoff, D. M.; Tornow, W.; Heeger, K. M.; Detwiler, J. A.; Enomoto, S.; Decowski, M. P.

    2014-10-14

    We describe a compact, ultra-clean device used to deploy radioactive sources along the vertical axis of the KamLAND liquid-scintillator neutrino detector for purposes of calibration. The device worked by paying out and reeling in precise lengths of a hanging, small-gauge wire rope (cable); an assortment of interchangeable radioactive sources could be attached to a weight at the end of the cable. All components exposed to the radiopure liquid scintillator were made of chemically compatible UHV-cleaned materials, primarily stainless steel, in order to avoid contaminating or degrading the scintillator. To prevent radon intrusion, the apparatus was enclosed in a hermetically sealed housing inside a glove box, and both volumes were regularly flushed with purified nitrogen gas. Finally, an infrared camera attached to the side of the housing permitted real-time visual monitoring of the cable’s motion, and the system was controlled via a graphical user interface.

  10. Quantitative radiochemical method for determination of major sources of natural radioactivity in ores and minerals

    USGS Publications Warehouse

    Rosholt, J.N.

    1954-01-01

    When an ore sample contains radioactivity other than that attributable to the uranium series in equilibrium, a quantitative analysis of the other emitters must be made in order to determine the source of this activity. Thorium-232, radon-222, and lead-210 have been determined by isolation and subsequent activity analysis of some of their short-lived daughter products. The sulfides of bismuth and polonium are precipitated out of solutions of thorium or uranium ores, and the ??-particle activity of polonium-214, polonium-212, and polonium-210 is determined by scintillation-counting techniques. Polonium-214 activity is used to determine radon-222, polonium-212 activity for thorium-232, and polonium-210 for lead-210. The development of these methods of radiochemical analysis will facilitate the rapid determination of some of the major sources of natural radioactivity.

  11. A Low-Tech, Low-Budget Storage Solution for High Level Radioactive Sources

    SciTech Connect

    Brett Carlsen; Ted Reed; Todd Johnson; John Weathersby; Joe Alexander; Dave Griffith; Douglas Hamelin

    2014-07-01

    The need for safe, secure, and economical storage of radioactive material becomes increasingly important as beneficial uses of radioactive material expand (increases inventory), as political instability rises (increases threat), and as final disposal and treatment facilities are delayed (increases inventory and storage duration). Several vendor-produced storage casks are available for this purpose but are often costly — due to the required design, analyses, and licensing costs. Thus the relatively high costs of currently accepted storage solutions may inhibit substantial improvements in safety and security that might otherwise be achieved. This is particularly true in areas of the world where the economic and/or the regulatory infrastructure may not provide the means and/or the justification for such an expense. This paper considers a relatively low-cost, low-technology radioactive material storage solution. The basic concept consists of a simple shielded storage container that can be fabricated locally using a steel pipe and a corrugated steel culvert as forms enclosing a concrete annulus. Benefits of such a system include 1) a low-tech solution that utilizes materials and skills available virtually anywhere in the world, 2) a readily scalable design that easily adapts to specific needs such as the geometry and radioactivity of the source term material), 3) flexible placement allows for free-standing above-ground or in-ground (i.e., below grade or bermed) installation, 4) the ability for future relocation without direct handling of sources, and 5) a long operational lifetime . ‘Le mieux est l’ennemi du bien’ (translated: The best is the enemy of good) applies to the management of radioactive materials – particularly where the economic and/or regulatory justification for additional investment is lacking. Development of a low-cost alternative that considerably enhances safety and security may lead to a greater overall risk reduction than insisting on

  12. Observing Short-wave Infrared Atmospheric Fluorescence Near Radioactive Sources: A Feasibility Study

    DTIC Science & Technology

    2014-03-17

    a desire to measure cosmic ray effects. For example, the pioneering study of cosmic ray detection by fluorescence was by Bunner in 1967 wherein he...wavelengths, the ultra-high energy cosmic ray (UHECR) community has continued to pursue studies of the fluorescence yield from high energy particle impact on...have been a few experiments using radioactive sources rather than cosmic rays to study atmospheric fluorescence [4]. In one experiment, an americium

  13. Muon Tomography as a Tool to Detect Radioactive Source Shielding in Scrap Metal Containers

    NASA Astrophysics Data System (ADS)

    Bonomi, G.; Cambiaghi, D.; Dassa, L.; Donzella, A.; Subieta, M.; Villa, V.; Zenoni, A.; Furlan, M.; Rigoni, A.; Vanini, S.; Viesti, G.; Zumerle, G.; Benettoni, M.; Checchia, P.; Gonella, F.; Pegoraro, M.; Zanuttigh, P.; Calvagno, G.; Calvini, P.; Squarcia, S.

    2014-02-01

    Muon tomography was recently proposed as a tool to inspect large volumes with the purpose of recognizing high density materials immersed in lower density matrices. The MU-STEEL European project (RFCS-CT-2010-000033) studied the application of such a technique to detect radioactive source shielding in truck containers filled with scrap metals entering steel mill foundries. A description of the muon tomography technique, of the MU-STEEL project and of the obtained results will be presented.

  14. A singly charged ion source for radioactive 11C ion acceleration

    NASA Astrophysics Data System (ADS)

    Katagiri, K.; Noda, A.; Nagatsu, K.; Nakao, M.; Hojo, S.; Muramatsu, M.; Suzuki, K.; Wakui, T.; Noda, K.

    2016-02-01

    A new singly charged ion source using electron impact ionization has been developed to realize an isotope separation on-line system for simultaneous positron emission tomography imaging and heavy-ion cancer therapy using radioactive 11C ion beams. Low-energy electron beams are used in the electron impact ion source to produce singly charged ions. Ionization efficiency was calculated in order to decide the geometric parameters of the ion source and to determine the required electron emission current for obtaining high ionization efficiency. Based on these considerations, the singly charged ion source was designed and fabricated. In testing, the fabricated ion source was found to have favorable performance as a singly charged ion source.

  15. A singly charged ion source for radioactive {sup 11}C ion acceleration

    SciTech Connect

    Katagiri, K.; Noda, A.; Nagatsu, K.; Nakao, M.; Hojo, S.; Muramatsu, M.; Suzuki, K.; Wakui, T.; Noda, K.

    2016-02-15

    A new singly charged ion source using electron impact ionization has been developed to realize an isotope separation on-line system for simultaneous positron emission tomography imaging and heavy-ion cancer therapy using radioactive {sup 11}C ion beams. Low-energy electron beams are used in the electron impact ion source to produce singly charged ions. Ionization efficiency was calculated in order to decide the geometric parameters of the ion source and to determine the required electron emission current for obtaining high ionization efficiency. Based on these considerations, the singly charged ion source was designed and fabricated. In testing, the fabricated ion source was found to have favorable performance as a singly charged ion source.

  16. Radon Adsorbed in Activated Charcoal--A Simple and Safe Radiation Source for Teaching Practical Radioactivity in Schools and Colleges

    ERIC Educational Resources Information Center

    Al-Azmi, Darwish; Mustapha, Amidu O.; Karunakara, N.

    2012-01-01

    Simple procedures for teaching practical radioactivity are presented in a way that attracts students' attention and does not make them apprehensive about their safety. The radiation source is derived from the natural environment. It is based on the radioactivity of radon, a ubiquitous inert gas, and the adsorptive property of activated charcoal.…

  17. Radon Adsorbed in Activated Charcoal--A Simple and Safe Radiation Source for Teaching Practical Radioactivity in Schools and Colleges

    ERIC Educational Resources Information Center

    Al-Azmi, Darwish; Mustapha, Amidu O.; Karunakara, N.

    2012-01-01

    Simple procedures for teaching practical radioactivity are presented in a way that attracts students' attention and does not make them apprehensive about their safety. The radiation source is derived from the natural environment. It is based on the radioactivity of radon, a ubiquitous inert gas, and the adsorptive property of activated charcoal.…

  18. Open Source Initiative Powers Real-Time Data Streams

    NASA Technical Reports Server (NTRS)

    2014-01-01

    Under an SBIR contract with Dryden Flight Research Center, Creare Inc. developed a data collection tool called the Ring Buffered Network Bus. The technology has now been released under an open source license and is hosted by the Open Source DataTurbine Initiative. DataTurbine allows anyone to stream live data from sensors, labs, cameras, ocean buoys, cell phones, and more.

  19. The open-source movement: an introduction for forestry professionals

    Treesearch

    Patrick Proctor; Paul C. Van Deusen; Linda S. Heath; Jeffrey H. Gove

    2005-01-01

    In recent years, the open-source movement has yielded a generous and powerful suite of software and utilities that rivals those developed by many commercial software companies. Open-source programs are available for many scientific needs: operating systems, databases, statistical analysis, Geographic Information System applications, and object-oriented programming....

  20. Open Source for Knowledge and Learning Management: Strategies beyond Tools

    ERIC Educational Resources Information Center

    Lytras, Miltiadis, Ed.; Naeve, Ambjorn, Ed.

    2007-01-01

    In the last years, knowledge and learning management have made a significant impact on the IT research community. "Open Source for Knowledge and Learning Management: Strategies Beyond Tools" presents learning and knowledge management from a point of view where the basic tools and applications are provided by open source technologies.…

  1. Open Source as Appropriate Technology for Global Education

    ERIC Educational Resources Information Center

    Carmichael, Patrick; Honour, Leslie

    2002-01-01

    Economic arguments for the adoption of "open source" software in business have been widely discussed. In this paper we draw on personal experience in the UK, South Africa and Southeast Asia to forward compelling reasons why open source software should be considered as an appropriate and affordable alternative to the currently prevailing…

  2. Getting Open Source Software into Schools: Strategies and Challenges

    ERIC Educational Resources Information Center

    Hepburn, Gary; Buley, Jan

    2006-01-01

    In this article Gary Hepburn and Jan Buley outline different approaches to implementing open source software (OSS) in schools; they also address the challenges that open source advocates should anticipate as they try to convince educational leaders to adopt OSS. With regard to OSS implementation, they note that schools have a flexible range of…

  3. Can open-source R&D reinvigorate drug research?

    PubMed

    Munos, Bernard

    2006-09-01

    The low number of novel therapeutics approved by the US FDA in recent years continues to cause great concern about productivity and declining innovation. Can open-source drug research and development, using principles pioneered by the highly successful open-source software movement, help revive the industry?

  4. Open Source Communities in Technical Writing: Local Exigence, Global Extensibility

    ERIC Educational Resources Information Center

    Conner, Trey; Gresham, Morgan; McCracken, Jill

    2011-01-01

    By offering open-source software (OSS)-based networks as an affordable technology alternative, we partnered with a nonprofit community organization. In this article, we narrate the client-based experiences of this partnership, highlighting the ways in which OSS and open-source culture (OSC) transformed our students' and our own expectations of…

  5. Integrating an Automatic Judge into an Open Source LMS

    ERIC Educational Resources Information Center

    Georgouli, Katerina; Guerreiro, Pedro

    2011-01-01

    This paper presents the successful integration of the evaluation engine of Mooshak into the open source learning management system Claroline. Mooshak is an open source online automatic judge that has been used for international and national programming competitions. although it was originally designed for programming competitions, Mooshak has also…

  6. Getting Open Source Software into Schools: Strategies and Challenges

    ERIC Educational Resources Information Center

    Hepburn, Gary; Buley, Jan

    2006-01-01

    In this article Gary Hepburn and Jan Buley outline different approaches to implementing open source software (OSS) in schools; they also address the challenges that open source advocates should anticipate as they try to convince educational leaders to adopt OSS. With regard to OSS implementation, they note that schools have a flexible range of…

  7. Open Source as Appropriate Technology for Global Education

    ERIC Educational Resources Information Center

    Carmichael, Patrick; Honour, Leslie

    2002-01-01

    Economic arguments for the adoption of "open source" software in business have been widely discussed. In this paper we draw on personal experience in the UK, South Africa and Southeast Asia to forward compelling reasons why open source software should be considered as an appropriate and affordable alternative to the currently prevailing…

  8. Open-Source Unionism: New Workers, New Strategies

    ERIC Educational Resources Information Center

    Schmid, Julie M.

    2004-01-01

    In "Open-Source Unionism: Beyond Exclusive Collective Bargaining," published in fall 2002 in the journal Working USA, labor scholars Richard B. Freeman and Joel Rogers use the term "open-source unionism" to describe a form of unionization that uses Web technology to organize in hard-to-unionize workplaces. Rather than depend on the traditional…

  9. Open Source Course Management Systems: A Case Study

    ERIC Educational Resources Information Center

    Remy, Eric

    2005-01-01

    In Fall 2003, Randolph-Macon Woman's College rolled out Claroline, an Open Source course management system for all the classes on campus. This document will cover some background on both Open Source in general and course management systems in specific, discuss technical challenges in the introduction and integration of the system and give some…

  10. Open Source Communities in Technical Writing: Local Exigence, Global Extensibility

    ERIC Educational Resources Information Center

    Conner, Trey; Gresham, Morgan; McCracken, Jill

    2011-01-01

    By offering open-source software (OSS)-based networks as an affordable technology alternative, we partnered with a nonprofit community organization. In this article, we narrate the client-based experiences of this partnership, highlighting the ways in which OSS and open-source culture (OSC) transformed our students' and our own expectations of…

  11. Open Source Library Management Systems: A Multidimensional Evaluation

    ERIC Educational Resources Information Center

    Balnaves, Edmund

    2008-01-01

    Open source library management systems have improved steadily in the last five years. They now present a credible option for small to medium libraries and library networks. An approach to their evaluation is proposed that takes account of three additional dimensions that only open source can offer: the developer and support community, the source…

  12. Open Source for Knowledge and Learning Management: Strategies beyond Tools

    ERIC Educational Resources Information Center

    Lytras, Miltiadis, Ed.; Naeve, Ambjorn, Ed.

    2007-01-01

    In the last years, knowledge and learning management have made a significant impact on the IT research community. "Open Source for Knowledge and Learning Management: Strategies Beyond Tools" presents learning and knowledge management from a point of view where the basic tools and applications are provided by open source technologies.…

  13. Migrations of the Mind: The Emergence of Open Source Education

    ERIC Educational Resources Information Center

    Glassman, Michael; Bartholomew, Mitchell; Jones, Travis

    2011-01-01

    The authors describe an Open Source approach to education. They define Open Source Education (OSE) as a teaching and learning framework where the use and presentation of information is non-hierarchical, malleable, and subject to the needs and contributions of students as they become "co-owners" of the course. The course transforms itself into an…

  14. Integrating an Automatic Judge into an Open Source LMS

    ERIC Educational Resources Information Center

    Georgouli, Katerina; Guerreiro, Pedro

    2011-01-01

    This paper presents the successful integration of the evaluation engine of Mooshak into the open source learning management system Claroline. Mooshak is an open source online automatic judge that has been used for international and national programming competitions. although it was originally designed for programming competitions, Mooshak has also…

  15. Public exposure to hazards associated with natural radioactivity in open-pit mining in Ghana.

    PubMed

    Darko, E O; Faanu, A; Awudu, A R; Emi-Reynolds, G; Yeboah, J; Oppon, O C; Akaho, E H K

    2010-01-01

    The results of studies carried out on public exposure contribution from naturally occurring radioactive materials (NORMS) in two open-pit mines in the Western and Ashanti regions of Ghana are reported. The studies were carried out under International Atomic Energy Agency-supported Technical Co-operation Project GHA/9/005. Measurements were made on samples of water, soil, ore, mine tailings and air using gamma spectrometry. Solid-state nuclear track detectors were used for radon concentration measurements. Survey was also carried out to determine the ambient gamma dose rate in the vicinity of the mines and surrounding areas. The effective doses due to external gamma irradiation, ingestion of water and inhalation of radon and ore dusts were calculated for the two mines. The average annual effective dose was found to be 0.30 +/- 0.06 mSv. The result was found to be within the levels published by other countries. The study provides a useful information and data for establishing a comprehensive framework to investigate other mines and develop guidelines for monitoring and control of NORMS in the mining industry and the environment as a whole in Ghana.

  16. Learning from hackers: open-source clinical trials.

    PubMed

    Dunn, Adam G; Day, Richard O; Mandl, Kenneth D; Coiera, Enrico

    2012-05-02

    Open sharing of clinical trial data has been proposed as a way to address the gap between the production of clinical evidence and the decision-making of physicians. A similar gap was addressed in the software industry by their open-source software movement. Here, we examine how the social and technical principles of the movement can guide the growth of an open-source clinical trial community.

  17. Open Source Intelligence "OSINT": Issues for Congress

    DTIC Science & Technology

    2008-01-28

    programs of the Soviet Union and towards the disparate threats posed by emerging post-Cold War threats. Collection strategies shifted from sophisticated...he stated, “Open source intelligence is the outer pieces of the jigsaw puzzle, without which one can neither begin nor complete the puzzle ... open...17 Some open source proponents view such information as constituting more than just the “the outer pieces of the jigsaw puzzle,” but rather every bit

  18. Research on OpenStack of open source cloud computing in colleges and universities’ computer room

    NASA Astrophysics Data System (ADS)

    Wang, Lei; Zhang, Dandan

    2017-06-01

    In recent years, the cloud computing technology has a rapid development, especially open source cloud computing. Open source cloud computing has attracted a large number of user groups by the advantages of open source and low cost, have now become a large-scale promotion and application. In this paper, firstly we briefly introduced the main functions and architecture of the open source cloud computing OpenStack tools, and then discussed deeply the core problems of computer labs in colleges and universities. Combining with this research, it is not that the specific application and deployment of university computer rooms with OpenStack tool. The experimental results show that the application of OpenStack tool can efficiently and conveniently deploy cloud of university computer room, and its performance is stable and the functional value is good.

  19. Open Source, Meet "User-Generated Science"

    ERIC Educational Resources Information Center

    Huwe, Terence K.

    2009-01-01

    This article discusses Research Blogging, a community-run nonprofit organization that is promoting a suite of blogging software to scholars. Research Blogging itself does two things. First, it extends an invitation to a community, and it is open to anyone. Second, it requires its users to follow guidelines. The combination of rigorous guidelines…

  20. Initial Test Results from a Multicusp Source for TRIUMF's Radioactive Beam Facility.

    NASA Astrophysics Data System (ADS)

    Kuo, Thomas; Yuan, Dick; Jayamanna, Keerthi; McDonald, Mike; Baartman, Rick; MacKenzie, Georges; Bricault, Pierre; Dombsky, Marik; Schmor, Paul; Leung, Kow; Williams, Don; Gough, Rick

    1997-05-01

    A multicusp source for positive ion beams has been designed and constructed in collaboration with the Ion Beam Technology Department of LBNL for the TRIUMF ISAC project. This type of source has demonstrated a high yield of singly charged ions, a low energy spread and a good emittance and is compact and simple. Several stages of tests and measurements using non-radioactive beams to characterize the source performance are being carried out prior to the final phase of radioactive target-source tests. Source properties such as the ion species population, beam intensity, gas efficiency and the ionization of a substance of diminutive quantity mixed with a carrier gas, were tested at the LBNL site. At present, these tests are being repeated at TRIUMF. A cross check on the source-extraction system gas efficiency in comparison with IGUN calculations is in progress. Emittance and beam energy spread measurements will be made both at LBNL and TRIUMF. Results of these tests will be reported and certain problems encountered during the tests will be discussed.

  1. Selection of targets and ion sources for RIB generation at the Holifield Radioactive Ion Beam Facility

    SciTech Connect

    Alton, G.D.

    1995-12-31

    In this report, the authors describe the performance characteristics for a selected number of target ion sources that will be employed for initial use at the Holifield Radioactive Ion Beam Facility (HRIBF) as well as prototype ion sources that show promise for future use for RIB applications. A brief review of present efforts to select target materials and to design composite target matrix/heat-sink systems that simultaneously incorporate the short diffusion lengths, high permeabilities, and controllable temperatures required to effect fast and efficient diffusion release of the short-lived species is also given.

  2. The UK's Surplus Source Disposal Programme: successful management of a national radioactive legacy.

    PubMed

    Williams, Clive; Burns, Philip; Wakerley, Malcolm; Watson, Isabelle; Cook, Marianne; Moloney, Barry

    2010-06-01

    Between 2004 and 2009, the Surplus Source Disposal Programme (SSDP) arranged and subsidised the safe disposal or recycling of more than 11,000 unwanted radioactive items containing in total more than 8.5 x 10(14) Bq of activity, from some 500 sites throughout the United Kingdom. Sources were removed principally from universities, schools and colleges, museums, and hospitals. SSDP was funded by the UK Government and managed by the Environment Agency. The programme was delivered at a total cost of pound sterling 7.14 million, nearly pound sterling 2 million less than its initial budget. This was a big success for health and safety, the environment, business and the public purse. Current legislative requirements under the High Activity Sealed Sources Directive, which came into effect during 2005, will prevent a build-up of high activity surplus sources in future. Continuing vigilance may be needed to avoid a build-up of lower activity disused sources.

  3. Targets for ion sources for RIB generation at the Holifield Radioactive Ion Beam Facility

    SciTech Connect

    Alton, G.D.

    1995-12-31

    The Holifield Radioactive Ion Beam Facility (HRIBF), now under construction at the Oak Ridge National Laboratory, is based on the use of the well-known on-line isotope separator (ISOL) technique in which radioactive nuclei are produced by fusion type reactions in selectively chosen target materials by high-energy proton, deuteron, or He ion beams from the Oak Ridge Isochronous Cyclotron (ORIC). Among several major challenges posed by generating and accelerating adequate intensities of radioactive ion beams (RIBs), selection of the most appropriate target material for production of the species of interest is, perhaps, the most difficult. In this report, we briefly review present efforts to select target materials and to design composite target matrix/heat-sink systems that simultaneously incorporate the short diffusion lengths, high permeabilities, and controllable temperatures required to effect maximum diffusion release rates of the short-lived species that can be realized at the temperature limits of specific target materials. We also describe the performance characteristics for a selected number of target ion sources that will be employed for initial use at the HRIBF as well as prototype ion sources that show promise for future use for RIB applications.

  4. Development of a portable system for checking radioactive sources using long wave radio frequency identification.

    PubMed

    Mori, K; Deji, S; Ito, S; Saze, T; Nishizawa, K

    2007-03-01

    A portable system for automatically checking radioactive sources stored in lead containers at low temperatures was developed in order to prevent the discharging of orphan sources and contaminated materials from a controlled area to the general public. A radio frequency identification (RFID) system using a long wave in a frequency range of 125 kHz was composed of identification tags, a reader, a notebook computer, and software. ID tags without batteries were devised by using integrated circuits with an electrically erasable programmable read-only memory of 250 bytes and antennas. This software consisted of operating and maintenance functions. The read range of the ID tags was adjusted to around 5 cm in order to avoid accidental contamination and for discriminating the multiple sources. A water layer of 6.9 cm had no influence on communication between the ID tags and the reader. The data of the ID tags stored at +4, -20, and -80 degrees C were precisely read 4 mo later. The influence of lead was completely removed by separating the ID tags more than 1.6 cm from the lead. A reader can exactly identify the data of the ID tags within 6.0 cm at a velocity less than 9.0 cm s(-1). Performance of the software was verified using mock data. Nine lists concerning registered, disposed, and missing sources, etc., were displayed on the computer monitor and printed out. An RFID system using long waves proved to be applicable for routinely checking radioactive sources.

  5. Development of Laser Light Sources for Trapping Radioactive Francium Atoms Toward Tests of Fundamental Symmetries

    NASA Astrophysics Data System (ADS)

    Harada, Ken-ichi; Ezure, Saki; Hayamizu, Tomohiro; Kato, Ko; Kawamura, Hirokazu; Inoue, Takeshi; Arikawa, Hiroshi; Ishikawa, Taisuke; Aoki, Takahiro; Uchiyama, Aiko; Itoh, Masatoshi; Ando, Shun; Aoki, Takatoshi; Hatakeyama, Atsushi; Hatanaka, Kichiji; Imai, Kenichi; Murakami, Tetsuya; Shimizu, Yasuhiro; Sato, Tomoya; Wakasa, Tomotsugu; Yoshida, Hidetomo P.; Sakemi, Yasuhiro

    We have developed laser light sources and a magneto-optical trap system for cooling and trapping radioactive francium (Fr) atoms. Because Fr is the heaviest alkali element, a Fr atom exhibits high sensitivity to symmetry violation effects such as atomic parity nonconservation (APNC) and the electron electric dipole moment (eEDM). A laser cooling and trapping technique reduces the systematic errors due to the Doppler effect and the motion-induced magnetic field effect caused by the velocity of atoms. Thus, optically cooled and trapped Fr atoms are among a few promising candidates considered for APNC and eEDM measurements. Frequency stabilization of laser light is required for any stable measurement involving trapped radioactive atoms, including Fr. Since the hyperfine splitting in iodine molecules (127I2) is close to the resonance frequency of the Fr D2 line, we performed frequency modulation spectroscopy of hyperfine structures of I2.

  6. 78 FR 53020 - Branch Technical Position on the Import of Non-U.S. Origin Radioactive Sources

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-08-28

    ... this Code . . ., unless an alternate safe arrangement can be made.'' This Code of Practice served as a... manufacturer as material, in reality the radioactive sealed source actually became waste following its...

  7. Guidelines for the implementation of an open source information system

    SciTech Connect

    Doak, J.; Howell, J.A.

    1995-08-01

    This work was initially performed for the International Atomic Energy Agency (IAEA) to help with the Open Source Task of the 93 + 2 Initiative; however, the information should be of interest to anyone working with open sources. The authors cover all aspects of an open source information system (OSIS) including, for example, identifying relevant sources, understanding copyright issues, and making information available to analysts. They foresee this document as a reference point that implementors of a system could augment for their particular needs. The primary organization of this document focuses on specific aspects, or components, of an OSIS; they describe each component and often make specific recommendations for its implementation. This document also contains a section discussing the process of collecting open source data and a section containing miscellaneous information. The appendix contains a listing of various providers, producers, and databases that the authors have come across in their research.

  8. OpenSesame: an open-source, graphical experiment builder for the social sciences.

    PubMed

    Mathôt, Sebastiaan; Schreij, Daniel; Theeuwes, Jan

    2012-06-01

    In the present article, we introduce OpenSesame, a graphical experiment builder for the social sciences. OpenSesame is free, open-source, and cross-platform. It features a comprehensive and intuitive graphical user interface and supports Python scripting for complex tasks. Additional functionality, such as support for eyetrackers, input devices, and video playback, is available through plug-ins. OpenSesame can be used in combination with existing software for creating experiments.

  9. OMPC: an Open-Source MATLAB®-to-Python Compiler

    PubMed Central

    Jurica, Peter; van Leeuwen, Cees

    2008-01-01

    Free access to scientific information facilitates scientific progress. Open-access scientific journals are a first step in this direction; a further step is to make auxiliary and supplementary materials that accompany scientific publications, such as methodological procedures and data-analysis tools, open and accessible to the scientific community. To this purpose it is instrumental to establish a software base, which will grow toward a comprehensive free and open-source language of technical and scientific computing. Endeavors in this direction are met with an important obstacle. MATLAB®, the predominant computation tool in many fields of research, is a closed-source commercial product. To facilitate the transition to an open computation platform, we propose Open-source MATLAB®-to-Python Compiler (OMPC), a platform that uses syntax adaptation and emulation to allow transparent import of existing MATLAB® functions into Python programs. The imported MATLAB® modules will run independently of MATLAB®, relying on Python's numerical and scientific libraries. Python offers a stable and mature open source platform that, in many respects, surpasses commonly used, expensive commercial closed source packages. The proposed software will therefore facilitate the transparent transition towards a free and general open-source lingua franca for scientific computation, while enabling access to the existing methods and algorithms of technical computing already available in MATLAB®. OMPC is available at http://ompc.juricap.com. PMID:19225577

  10. OMPC: an Open-Source MATLAB-to-Python Compiler.

    PubMed

    Jurica, Peter; van Leeuwen, Cees

    2009-01-01

    Free access to scientific information facilitates scientific progress. Open-access scientific journals are a first step in this direction; a further step is to make auxiliary and supplementary materials that accompany scientific publications, such as methodological procedures and data-analysis tools, open and accessible to the scientific community. To this purpose it is instrumental to establish a software base, which will grow toward a comprehensive free and open-source language of technical and scientific computing. Endeavors in this direction are met with an important obstacle. MATLAB((R)), the predominant computation tool in many fields of research, is a closed-source commercial product. To facilitate the transition to an open computation platform, we propose Open-source MATLAB((R))-to-Python Compiler (OMPC), a platform that uses syntax adaptation and emulation to allow transparent import of existing MATLAB((R)) functions into Python programs. The imported MATLAB((R)) modules will run independently of MATLAB((R)), relying on Python's numerical and scientific libraries. Python offers a stable and mature open source platform that, in many respects, surpasses commonly used, expensive commercial closed source packages. The proposed software will therefore facilitate the transparent transition towards a free and general open-source lingua franca for scientific computation, while enabling access to the existing methods and algorithms of technical computing already available in MATLAB((R)). OMPC is available at http://ompc.juricap.com.

  11. Induced Radioactivity in Lead Shielding at the National Synchrotron Light Source.

    PubMed

    Ghosh, Vinita J; Schaefer, Charles; Kahnhauser, Henry

    2017-06-01

    The National Synchrotron Light Source (NSLS) at Brookhaven National Laboratory was shut down in September 2014. Lead bricks used as radiological shadow shielding within the accelerator were exposed to stray radiation fields during normal operations. The FLUKA code, a fully integrated Monte Carlo simulation package for the interaction and transport of particles and nuclei in matter, was used to estimate induced radioactivity in this shielding and stainless steel beam pipe from known beam losses. The FLUKA output was processed using MICROSHIELD® to estimate on-contact exposure rates with individually exposed bricks to help design and optimize the radiological survey process. This entire process can be modeled using FLUKA, but use of MICROSHIELD® as a secondary method was chosen because of the project's resource constraints. Due to the compressed schedule and lack of shielding configuration data, simple FLUKA models were developed. FLUKA activity estimates for stainless steel were compared with sampling data to validate results, which show that simple FLUKA models and irradiation geometries can be used to predict radioactivity inventories accurately in exposed materials. During decommissioning 0.1% of the lead bricks were found to have measurable levels of induced radioactivity. Post-processing with MICROSHIELD® provides an acceptable secondary method of estimating residual exposure rates.

  12. 10 CFR 39.43 - Inspection, maintenance, and opening of a source or source holder.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 10 Energy 1 2012-01-01 2012-01-01 false Inspection, maintenance, and opening of a source or source holder. 39.43 Section 39.43 Energy NUCLEAR REGULATORY COMMISSION LICENSES AND RADIATION SAFETY REQUIREMENTS FOR WELL LOGGING Equipment § 39.43 Inspection, maintenance, and opening of a source or...

  13. 10 CFR 39.43 - Inspection, maintenance, and opening of a source or source holder.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 10 Energy 1 2014-01-01 2014-01-01 false Inspection, maintenance, and opening of a source or source holder. 39.43 Section 39.43 Energy NUCLEAR REGULATORY COMMISSION LICENSES AND RADIATION SAFETY REQUIREMENTS FOR WELL LOGGING Equipment § 39.43 Inspection, maintenance, and opening of a source or...

  14. 10 CFR 39.43 - Inspection, maintenance, and opening of a source or source holder.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 10 Energy 1 2013-01-01 2013-01-01 false Inspection, maintenance, and opening of a source or source holder. 39.43 Section 39.43 Energy NUCLEAR REGULATORY COMMISSION LICENSES AND RADIATION SAFETY REQUIREMENTS FOR WELL LOGGING Equipment § 39.43 Inspection, maintenance, and opening of a source or...

  15. 10 CFR 39.43 - Inspection, maintenance, and opening of a source or source holder.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 10 Energy 1 2011-01-01 2011-01-01 false Inspection, maintenance, and opening of a source or source holder. 39.43 Section 39.43 Energy NUCLEAR REGULATORY COMMISSION LICENSES AND RADIATION SAFETY REQUIREMENTS FOR WELL LOGGING Equipment § 39.43 Inspection, maintenance, and opening of a source or...

  16. Open source IPSEC software in manned and unmanned space missions

    NASA Astrophysics Data System (ADS)

    Edwards, Jacob

    Network security is a major topic of research because cyber attackers pose a threat to national security. Securing ground-space communications for NASA missions is important because attackers could endanger mission success and human lives. This thesis describes how an open source IPsec software package was used to create a secure and reliable channel for ground-space communications. A cost efficient, reproducible hardware testbed was also created to simulate ground-space communications. The testbed enables simulation of low-bandwidth and high latency communications links to experiment how the open source IPsec software reacts to these network constraints. Test cases were built that allowed for validation of the testbed and the open source IPsec software. The test cases also simulate using an IPsec connection from mission control ground routers to points of interest in outer space. Tested open source IPsec software did not meet all the requirements. Software changes were suggested to meet requirements.

  17. Open Source Radiation Hardened by Design Technology

    NASA Technical Reports Server (NTRS)

    Shuler, Robert

    2016-01-01

    The proposed technology allows use of the latest microcircuit technology with lowest power and fastest speed, with minimal delay and engineering costs, through new Radiation Hardened by Design (RHBD) techniques that do not require extensive process characterization, technique evaluation and re-design at each Moore's Law generation. The separation of critical node groups is explicitly parameterized so it can be increased as microcircuit technologies shrink. The technology will be open access to radiation tolerant circuit vendors. INNOVATION: This technology would enhance computation intensive applications such as autonomy, robotics, advanced sensor and tracking processes, as well as low power applications such as wireless sensor networks. OUTCOME / RESULTS: 1) Simulation analysis indicates feasibility. 2)Compact voting latch 65 nanometer test chip designed and submitted for fabrication -7/2016. INFUSION FOR SPACE / EARTH: This technology may be used in any digital integrated circuit in which a high level of resistance to Single Event Upsets is desired, and has the greatest benefit outside low earth orbit where cosmic rays are numerous.

  18. Open Source Solutions for Libraries: ABCD vs Koha

    ERIC Educational Resources Information Center

    Macan, Bojan; Fernandez, Gladys Vanesa; Stojanovski, Jadranka

    2013-01-01

    Purpose: The purpose of this study is to present an overview of the two open source (OS) integrated library systems (ILS)--Koha and ABCD (ISIS family), to compare their "next-generation library catalog" functionalities, and to give comparison of other important features available through ILS modules. Design/methodology/approach: Two open source…

  19. Modular Open-Source Software for Item Factor Analysis

    ERIC Educational Resources Information Center

    Pritikin, Joshua N.; Hunter, Micheal D.; Boker, Steven M.

    2015-01-01

    This article introduces an item factor analysis (IFA) module for "OpenMx," a free, open-source, and modular statistical modeling package that runs within the R programming environment on GNU/Linux, Mac OS X, and Microsoft Windows. The IFA module offers a novel model specification language that is well suited to programmatic generation…

  20. Modular Open-Source Software for Item Factor Analysis

    ERIC Educational Resources Information Center

    Pritikin, Joshua N.; Hunter, Micheal D.; Boker, Steven M.

    2015-01-01

    This article introduces an item factor analysis (IFA) module for "OpenMx," a free, open-source, and modular statistical modeling package that runs within the R programming environment on GNU/Linux, Mac OS X, and Microsoft Windows. The IFA module offers a novel model specification language that is well suited to programmatic generation…

  1. Open Source Solutions for Libraries: ABCD vs Koha

    ERIC Educational Resources Information Center

    Macan, Bojan; Fernandez, Gladys Vanesa; Stojanovski, Jadranka

    2013-01-01

    Purpose: The purpose of this study is to present an overview of the two open source (OS) integrated library systems (ILS)--Koha and ABCD (ISIS family), to compare their "next-generation library catalog" functionalities, and to give comparison of other important features available through ILS modules. Design/methodology/approach: Two open source…

  2. Open Source Software Licenses for Livermore National Laboratory

    SciTech Connect

    Busby, L.

    2000-08-10

    This paper attempts to develop supporting material in an effort to provide new options for licensing Laboratory-created software. Where employees and the Lab wish to release software codes as so-called ''Open Source'', they need, at a minimum, new licensing language for their released products. Several open source software licenses are reviewed to understand their common elements, and develop recommendations regarding new language.

  3. Open-Source 3D-Printable Optics Equipment

    PubMed Central

    Zhang, Chenlong; Anzalone, Nicholas C.; Faria, Rodrigo P.; Pearce, Joshua M.

    2013-01-01

    Just as the power of the open-source design paradigm has driven down the cost of software to the point that it is accessible to most people, the rise of open-source hardware is poised to drive down the cost of doing experimental science to expand access to everyone. To assist in this aim, this paper introduces a library of open-source 3-D-printable optics components. This library operates as a flexible, low-cost public-domain tool set for developing both research and teaching optics hardware. First, the use of parametric open-source designs using an open-source computer aided design package is described to customize the optics hardware for any application. Second, details are provided on the use of open-source 3-D printers (additive layer manufacturing) to fabricate the primary mechanical components, which are then combined to construct complex optics-related devices. Third, the use of the open-source electronics prototyping platform are illustrated as control for optical experimental apparatuses. This study demonstrates an open-source optical library, which significantly reduces the costs associated with much optical equipment, while also enabling relatively easily adapted customizable designs. The cost reductions in general are over 97%, with some components representing only 1% of the current commercial investment for optical products of similar function. The results of this study make its clear that this method of scientific hardware development enables a much broader audience to participate in optical experimentation both as research and teaching platforms than previous proprietary methods. PMID:23544104

  4. Open-source 3D-printable optics equipment.

    PubMed

    Zhang, Chenlong; Anzalone, Nicholas C; Faria, Rodrigo P; Pearce, Joshua M

    2013-01-01

    Just as the power of the open-source design paradigm has driven down the cost of software to the point that it is accessible to most people, the rise of open-source hardware is poised to drive down the cost of doing experimental science to expand access to everyone. To assist in this aim, this paper introduces a library of open-source 3-D-printable optics components. This library operates as a flexible, low-cost public-domain tool set for developing both research and teaching optics hardware. First, the use of parametric open-source designs using an open-source computer aided design package is described to customize the optics hardware for any application. Second, details are provided on the use of open-source 3-D printers (additive layer manufacturing) to fabricate the primary mechanical components, which are then combined to construct complex optics-related devices. Third, the use of the open-source electronics prototyping platform are illustrated as control for optical experimental apparatuses. This study demonstrates an open-source optical library, which significantly reduces the costs associated with much optical equipment, while also enabling relatively easily adapted customizable designs. The cost reductions in general are over 97%, with some components representing only 1% of the current commercial investment for optical products of similar function. The results of this study make its clear that this method of scientific hardware development enables a much broader audience to participate in optical experimentation both as research and teaching platforms than previous proprietary methods.

  5. Calibration of a time-resolved hard-x-ray detector using radioactive sources

    SciTech Connect

    Stoeckl, C. Theobald, W.; Regan, S. P.; Romanofsky, M. H.

    2016-11-15

    A four-channel, time-resolved, hard x-ray detector (HXRD) has been operating at the Laboratory for Laser Energetics for more than a decade. The slope temperature of the hot-electron population in direct-drive inertial confinement fusion experiments is inferred by recording the hard x-ray radiation generated in the interaction of the electrons with the target. Measuring the energy deposited by hot electrons requires an absolute calibration of the hard x-ray detector. A novel method to obtain an absolute calibration of the HXRD using single photons from radioactive sources was developed, which uses a thermoelectrically cooled, low-noise, charge-sensitive amplifier.

  6. Calibration of a time-resolved hard-x-ray detector using radioactive sources

    NASA Astrophysics Data System (ADS)

    Stoeckl, C.; Theobald, W.; Regan, S. P.; Romanofsky, M. H.

    2016-11-01

    A four-channel, time-resolved, hard x-ray detector (HXRD) has been operating at the Laboratory for Laser Energetics for more than a decade. The slope temperature of the hot-electron population in direct-drive inertial confinement fusion experiments is inferred by recording the hard x-ray radiation generated in the interaction of the electrons with the target. Measuring the energy deposited by hot electrons requires an absolute calibration of the hard x-ray detector. A novel method to obtain an absolute calibration of the HXRD using single photons from radioactive sources was developed, which uses a thermoelectrically cooled, low-noise, charge-sensitive amplifier.

  7. A Neutron Source Facility for Neutron Cross-Section Measurements on Radioactive Targets at RIA

    SciTech Connect

    Ahle, L E; Bernstein, L; Rusnak, B; Berio, R

    2003-05-20

    The stockpile stewardship program is interested in neutron cross-section measurements on nuclei that are a few nucleons away from stability. Since neutron targets do not exist, radioactive targets are the only way to directly perform these measurements. This requires a facility that can provide high production rates for these short-lived nuclei as well as a source of neutrons. The Rare Isotope Accelerator (RIA) promises theses high production rates. Thus, adding a co-located neutron source facility to the RIA project baseline would allow these neutron cross-section measurements to be made. A conceptual design for such a neutron source has been developed, which would use two accelerators, a Dynamitron and a linac, to create the neutrons through a variety of reactions (d-d, d-t, deuteron break-up, p-Li). This range of reactions is needed in order to provide the desired energy range from 10's of keV to 20 MeV. The facility would also have hot cells to perform chemistry on the radioactive material both before and after neutron irradiation. The present status of this design and direction of future work will be discussed.

  8. Ion source developments for the production of radioactive isotope beams at TRIUMF

    SciTech Connect

    Ames, F. Bricault, P.; Heggen, H.; Kunz, P.; Lassen, J.; Mjøs, A.; Raeder, S.; Teigelhöfer, A.

    2014-02-15

    At the ISAC facility at TRIUMF radioactive ions are produced by bombarding solid targets with up to 100 μA of 500 MeV protons. The reaction products have to diffuse out of the hot target into an ion source. Normally, singly charged ions are extracted. They can be transported either directly to experiments or via an ECR charge state breeder to a post accelerator. Several different types of ion sources have to be used in order to deliver a large variety of rare isotope beams. At ISAC those are surface ion sources, forced electron beam arc discharge (FEBIAD) ion sources and resonant laser ionization sources. Recent development activities concentrated on increasing the selectivity for the ionization to suppress isobaric contamination in the beam. Therefore, a surface ion rejecting resonant laser ionization source (SIRLIS) has been developed to suppress ions from surface ionization. For the FEBIAD ion source a cold transfer line has been introduced to prevent less volatile components from reaching the ion source.

  9. Open source electronic health records and chronic disease management

    PubMed Central

    Goldwater, Jason C; Kwon, Nancy J; Nathanson, Ashley; Muckle, Alison E; Brown, Alexa; Cornejo, Kerri

    2014-01-01

    Objective To study and report on the use of open source electronic health records (EHR) to assist with chronic care management within safety net medical settings, such as community health centers (CHC). Methods and Materials The study was conducted by NORC at the University of Chicago from April to September 2010. The NORC team undertook a comprehensive environmental scan, including a literature review, a dozen key informant interviews using a semistructured protocol, and a series of site visits to CHC that currently use an open source EHR. Results Two of the sites chosen by NORC were actively using an open source EHR to assist in the redesign of their care delivery system to support more effective chronic disease management. This included incorporating the chronic care model into an CHC and using the EHR to help facilitate its elements, such as care teams for patients, in addition to maintaining health records on indigent populations, such as tuberculosis status on homeless patients. Discussion The ability to modify the open-source EHR to adapt to the CHC environment and leverage the ecosystem of providers and users to assist in this process provided significant advantages in chronic care management. Improvements in diabetes management, controlled hypertension and increases in tuberculosis vaccinations were assisted through the use of these open source systems. Conclusions The flexibility and adaptability of open source EHR demonstrated its utility and viability in the provision of necessary and needed chronic disease care among populations served by CHC. PMID:23813566

  10. Open source electronic health records and chronic disease management.

    PubMed

    Goldwater, Jason C; Kwon, Nancy J; Nathanson, Ashley; Muckle, Alison E; Brown, Alexa; Cornejo, Kerri

    2014-02-01

    To study and report on the use of open source electronic health records (EHR) to assist with chronic care management within safety net medical settings, such as community health centers (CHC). The study was conducted by NORC at the University of Chicago from April to September 2010. The NORC team undertook a comprehensive environmental scan, including a literature review, a dozen key informant interviews using a semistructured protocol, and a series of site visits to CHC that currently use an open source EHR. Two of the sites chosen by NORC were actively using an open source EHR to assist in the redesign of their care delivery system to support more effective chronic disease management. This included incorporating the chronic care model into an CHC and using the EHR to help facilitate its elements, such as care teams for patients, in addition to maintaining health records on indigent populations, such as tuberculosis status on homeless patients. The ability to modify the open-source EHR to adapt to the CHC environment and leverage the ecosystem of providers and users to assist in this process provided significant advantages in chronic care management. Improvements in diabetes management, controlled hypertension and increases in tuberculosis vaccinations were assisted through the use of these open source systems. The flexibility and adaptability of open source EHR demonstrated its utility and viability in the provision of necessary and needed chronic disease care among populations served by CHC.

  11. RadTrac : A system for detecting, localizing, and tracking radioactive sources in real time.

    SciTech Connect

    Vilim, R.; Klann, R.; Nuclear Engineering Division

    2009-10-01

    Within the homeland security and emergency response communities, there is a need for a low-profile system to detect and locate radioactive sources. RadTrac has been developed at Argonne National Laboratory as an integrated system for the detection, localization, identification, and tracking of radioactive sources in real time. The system is based on a network of radiation detectors and advanced signal-processing algorithms. Features include video surveillance, automated tracking, easy setup, and logging of all data and images. This paper describes the advanced algorithms that were developed and implemented for source detection, localization, and tracking in real time. In the physio-spatial integration approach to source localization, counts from multiple detectors are processed according to the underlying physics linking these counts to obtain the probability that a source is present at any point in space. This information is depicted in a probability density function map. This type of depiction allows the results to be presented in a simple, easy-to-understand manner. It also allows for many different complicated factors to be accounted for in a single image as each factor is computed as a probability density in space. These factors include spatial limitations, variable shielding, directional detectors, moving detectors, and different detector sizes and orientations. The utility and versatility of this approach is described in further detail. Advanced signal-processing algorithms have also been incorporated to improve real-time tracking and to increase signal-to-noise ratios including temporal linking and energy binning. Measurements aimed at demonstrating the sensitivity improvements through the use of advanced signal-processing techniques were performed and are presented. Results of tracking weak sources (<100 {micro}Ci {sup 137}Cs) using four fixed-position detectors are presented.

  12. Open source data assimilation framework for hydrological modeling

    NASA Astrophysics Data System (ADS)

    Ridler, Marc; Hummel, Stef; van Velzen, Nils; Katrine Falk, Anne; Madsen, Henrik

    2013-04-01

    An open-source data assimilation framework is proposed for hydrological modeling. Data assimilation (DA) in hydrodynamic and hydrological forecasting systems has great potential to improve predictions and improve model result. The basic principle is to incorporate measurement information into a model with the aim to improve model results by error minimization. Great strides have been made to assimilate traditional in-situ measurements such as discharge, soil moisture, hydraulic head and snowpack into hydrologic models. More recently, remotely sensed data retrievals of soil moisture, snow water equivalent or snow cover area, surface water elevation, terrestrial water storage and land surface temperature have been successfully assimilated in hydrological models. The assimilation algorithms have become increasingly sophisticated to manage measurement and model bias, non-linear systems, data sparsity (time & space) and undetermined system uncertainty. It is therefore useful to use a pre-existing DA toolbox such as OpenDA. OpenDA is an open interface standard for (and free implementation of) a set of tools to quickly implement DA and calibration for arbitrary numerical models. The basic design philosophy of OpenDA is to breakdown DA into a set of building blocks programmed in object oriented languages. To implement DA, a model must interact with OpenDA to create model instances, propagate the model, get/set variables (or parameters) and free the model once DA is completed. An open-source interface for hydrological models exists capable of all these tasks: OpenMI. OpenMI is an open source standard interface already adopted by key hydrological model providers. It defines a universal approach to interact with hydrological models during simulation to exchange data during runtime, thus facilitating the interactions between models and data sources. The interface is flexible enough so that models can interact even if the model is coded in a different language, represent

  13. Concentrating Radioactivity

    ERIC Educational Resources Information Center

    Herrmann, Richard A.

    1974-01-01

    By concentrating radioactivity contained on luminous dials, a teacher can make a high reading source for classroom experiments on radiation. The preparation of the source and its uses are described. (DT)

  14. Concentrating Radioactivity

    ERIC Educational Resources Information Center

    Herrmann, Richard A.

    1974-01-01

    By concentrating radioactivity contained on luminous dials, a teacher can make a high reading source for classroom experiments on radiation. The preparation of the source and its uses are described. (DT)

  15. Open Source and ROI: Open Source Has Made Significant Leaps in Recent Years. What Does It Have to Offer Education?

    ERIC Educational Resources Information Center

    Guhlin, Miguel

    2007-01-01

    A switch to free open source software can minimize cost and allow funding to be diverted to equipment and other programs. For instance, the OpenOffice suite is an alternative to expensive basic application programs offered by major vendors. Many such programs on the market offer features seldom used in education but for which educators must pay.…

  16. The Imagery Exchange (TIE): Open Source Imagery Management System

    NASA Astrophysics Data System (ADS)

    Alarcon, C.; Huang, T.; Thompson, C. K.; Roberts, J. T.; Hall, J. R.; Cechini, M.; Schmaltz, J. E.; McGann, J. M.; Boller, R. A.; Murphy, K. J.; Bingham, A. W.

    2013-12-01

    The NASA's Global Imagery Browse Service (GIBS) is the Earth Observation System (EOS) imagery solution for delivering global, full-resolution satellite imagery in a highly responsive manner. GIBS consists of two major subsystems, OnEarth and The Imagery Exchange (TIE). TIE is the GIBS horizontally scaled imagery workflow manager component, an Open Archival Information System (OAIS) responsible for orchestrating the acquisition, preparation, generation, and archiving of imagery to be served by OnEarth. TIE is an extension of the Data Management and Archive System (DMAS), a high performance data management system developed at the Jet Propulsion Laboratory by leveraging open source tools and frameworks, which includes Groovy/Grails, Restlet, Apache ZooKeeper, Apache Solr, and other open source solutions. This presentation focuses on the application of Open Source technologies in developing a horizontally scaled data system like DMAS and TIE. As part of our commitment in contributing back to the open source community, TIE is in the process of being open sourced. This presentation will also cover our current effort in getting TIE in to the hands of the community from which we benefited from.

  17. Your Personal Analysis Toolkit - An Open Source Solution

    NASA Astrophysics Data System (ADS)

    Mitchell, T.

    2009-12-01

    Open source software is commonly known for its web browsers, word processors and programming languages. However, there is a vast array of open source software focused on geographic information management and geospatial application building in general. As geo-professionals, having easy access to tools for our jobs is crucial. Open source software provides the opportunity to add a tool to your tool belt and carry it with you for your entire career - with no license fees, a supportive community and the opportunity to test, adopt and upgrade at your own pace. OSGeo is a US registered non-profit representing more than a dozen mature geospatial data management applications and programming resources. Tools cover areas such as desktop GIS, web-based mapping frameworks, metadata cataloging, spatial database analysis, image processing and more. Learn about some of these tools as they apply to AGU members, as well as how you can join OSGeo and its members in getting the job done with powerful open source tools. If you haven't heard of OSSIM, MapServer, OpenLayers, PostGIS, GRASS GIS or the many other projects under our umbrella - then you need to hear this talk. Invest in yourself - use open source!

  18. a Framework for AN Open Source Geospatial Certification Model

    NASA Astrophysics Data System (ADS)

    Khan, T. U. R.; Davis, P.; Behr, F.-J.

    2016-06-01

    The geospatial industry is forecasted to have an enormous growth in the forthcoming years and an extended need for well-educated workforce. Hence ongoing education and training play an important role in the professional life. Parallel, in the geospatial and IT arena as well in the political discussion and legislation Open Source solutions, open data proliferation, and the use of open standards have an increasing significance. Based on the Memorandum of Understanding between International Cartographic Association, OSGeo Foundation, and ISPRS this development led to the implementation of the ICA-OSGeo-Lab imitative with its mission "Making geospatial education and opportunities accessible to all". Discussions in this initiative and the growth and maturity of geospatial Open Source software initiated the idea to develop a framework for a worldwide applicable Open Source certification approach. Generic and geospatial certification approaches are already offered by numerous organisations, i.e., GIS Certification Institute, GeoAcademy, ASPRS, and software vendors, i. e., Esri, Oracle, and RedHat. They focus different fields of expertise and have different levels and ways of examination which are offered for a wide range of fees. The development of the certification framework presented here is based on the analysis of diverse bodies of knowledge concepts, i.e., NCGIA Core Curriculum, URISA Body Of Knowledge, USGIF Essential Body Of Knowledge, the "Geographic Information: Need to Know", currently under development, and the Geospatial Technology Competency Model (GTCM). The latter provides a US American oriented list of the knowledge, skills, and abilities required of workers in the geospatial technology industry and influenced essentially the framework of certification. In addition to the theoretical analysis of existing resources the geospatial community was integrated twofold. An online survey about the relevance of Open Source was performed and evaluated with 105

  19. A compact ultra-clean system for deploying radioactive sources inside the KamLAND detector

    DOE PAGES

    Banks, T. I.; Freedman, S. J.; Wallig, J.; ...

    2014-10-14

    We describe a compact, ultra-clean device used to deploy radioactive sources along the vertical axis of the KamLAND liquid-scintillator neutrino detector for purposes of calibration. The device worked by paying out and reeling in precise lengths of a hanging, small-gauge wire rope (cable); an assortment of interchangeable radioactive sources could be attached to a weight at the end of the cable. All components exposed to the radiopure liquid scintillator were made of chemically compatible UHV-cleaned materials, primarily stainless steel, in order to avoid contaminating or degrading the scintillator. To prevent radon intrusion, the apparatus was enclosed in a hermetically sealedmore » housing inside a glove box, and both volumes were regularly flushed with purified nitrogen gas. Finally, an infrared camera attached to the side of the housing permitted real-time visual monitoring of the cable’s motion, and the system was controlled via a graphical user interface.« less

  20. Use of open source distribution for a machine tool controller

    NASA Astrophysics Data System (ADS)

    Shackleford, William P.; Proctor, Frederick M.

    2001-02-01

    In recent years a growing number of government and university las, non-profit organizations and even a few for- profit corporations have found that making their source code public is good for both developers and users. In machine tool control, a growing number of users are demanding that the controllers they buy be `open architecture,' which would allow third parties and end-users at least limited ability to modify, extend or replace the components of that controller. This paper examines the advantages and dangers of going one step further, and providing `open source' controllers by relating the experiences of users and developers of the Enhanced Machine Controller. We also examine some implications for the development of standards for open-architecture but closed-source controllers. Some of the questions we hope to answer include: How can the quality be maintained after the source code has been modified? Can the code be trusted to run on expensive machines and parts, or when the safety of the operator is an issue? Can `open- architecture' but closed-source controllers ever achieve the level of flexibility or extensibility that open-source controllers can?

  1. A Framework for the Systematic Collection of Open Source Intelligence

    SciTech Connect

    Pouchard, Line Catherine; Trien, Joseph P; Dobson, Jonathan D

    2009-01-01

    Following legislative directions, the Intelligence Community has been mandated to make greater use of Open Source Intelligence (OSINT). Efforts are underway to increase the use of OSINT but there are many obstacles. One of these obstacles is the lack of tools helping to manage the volume of available data and ascertain its credibility. We propose a unique system for selecting, collecting and storing Open Source data from the Web and the Open Source Center. Some data management tasks are automated, document source is retained, and metadata containing geographical coordinates are added to the documents. Analysts are thus empowered to search, view, store, and analyze Web data within a single tool. We present ORCAT I and ORCAT II, two implementations of the system.

  2. SIMPLIFIED PRACTICAL TEST METHOD FOR PORTABLE DOSE METERS USING SEVERAL SEALED RADIOACTIVE SOURCES.

    PubMed

    Mikamoto, Takahiro; Yamada, Takahiro; Kurosawa, Tadahiro

    2016-09-01

    Sealed radioactive sources which have small activity were employed for the determination of response and tests for non-linearity and energy dependence of detector responses. Close source-to-detector geometry (at 0.3 m or less) was employed to practical tests for portable dose meters to accumulate statistically sufficient ionizing currents. Difference between response in the present experimentally studied field and in the reference field complied with ISO 4037 due to non-uniformity of radiation fluence at close geometry was corrected by use of Monte Carlo simulation. As a consequence, corrected results were consistent with the results obtained in the ISO 4037 reference field within their uncertainties. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  3. Radiological Threat Reduction (RTR) program : implementing physical security to protect large radioactive sources worldwide.

    SciTech Connect

    Lowe, Daniel L.

    2004-11-01

    The U.S. Department of Energy's Radiological Threat Reduction (RTR) Program strives to reduce the threat of a Radiological Dispersion Device (RDD) incident that could affect U.S. interests worldwide. Sandia National Laboratories supports the RTR program on many different levels. Sandia works directly with DOE to develop strategies, including the selection of countries to receive support and the identification of radioactive materials to be protected. Sandia also works with DOE in the development of guidelines and in training DOE project managers in physical protection principles. Other support to DOE includes performing rapid assessments and providing guidance for establishing foreign regulatory and knowledge infrastructure. Sandia works directly with foreign governments to establish cooperative agreements necessary to implement the RTR Program efforts to protect radioactive sources. Once necessary agreements are in place, Sandia works with in-country organizations to implement various security related initiatives, such as installing security systems and searching for (and securing) orphaned radioactive sources. The radioactive materials of interest to the RTR program include Cobalt 60, Cesium 137, Strontium 90, Iridium 192, Radium 226, Plutonium 238, Americium 241, Californium 252, and Others. Security systems are implemented using a standardized approach that provides consistency through out the RTR program efforts at Sandia. The approach incorporates a series of major tasks that overlap in order to provide continuity. The major task sequence is to: Establish in-country contacts - integrators, Obtain material characterizations, Perform site assessments and vulnerability assessments, Develop upgrade plans, Procure and install equipment, Conduct acceptance testing and performance testing, Develop procedures, and Conduct training. Other tasks are incorporated as appropriate and commonly include such as support of reconfiguring infrastructure, and developing security

  4. Metrological tests of a 200 L calibration source for HPGE detector systems for assay of radioactive waste drums.

    PubMed

    Boshkova, T; Mitev, K

    2016-03-01

    In this work we present test procedures, approval criteria and results from two metrological inspections of a certified large volume (152)Eu source (drum about 200L) intended for calibration of HPGe gamma assay systems used for activity measurement of radioactive waste drums. The aim of the inspections was to prove the stability of the calibration source during its working life. The large volume source was designed and produced in 2007. It consists of 448 identical sealed radioactive sources (modules) apportioned in 32 transparent plastic tubes which were placed in a wooden matrix which filled the drum. During the inspections the modules were subjected to tests for verification of their certified characteristics. The results show a perfect compliance with the NIST basic guidelines for the properties of a radioactive certified reference material (CRM) and demonstrate the stability of the large volume CRM-drum after 7 years of operation. Copyright © 2015 Elsevier Ltd. All rights reserved.

  5. OpenMS and TOPP: open source software for LC-MS data analysis.

    PubMed

    Reinert, Knut; Kohlbacher, Oliver

    2010-01-01

    The automatic analysis of mass spectrometry data is becoming more and more important since increasingly larger datasets are readily available that cannot be evaluated manually. This has triggered the development of several open-source software libraries for the automatic analysis of such data. Among those is OpenMS together with TOPP (The OpenMS Proteomics Pipeline). OpenMS is a C++ library for rapid prototyping of complex algorithms for the analysis of mass spectrometry data. Based on the OpenMS library, TOPP provides a collection of tools for the most important tasks in proteomics analysis. The tight coupling of OpenMS and TOPP makes it easy to extend TOPP by adding new tools to the OpenMS library. We describe the overall concepts behind the software and illustrate its use with several examples.

  6. Open source drug discovery in practice: a case study.

    PubMed

    Årdal, Christine; Røttingen, John-Arne

    2012-01-01

    Open source drug discovery offers potential for developing new and inexpensive drugs to combat diseases that disproportionally affect the poor. The concept borrows two principle aspects from open source computing (i.e., collaboration and open access) and applies them to pharmaceutical innovation. By opening a project to external contributors, its research capacity may increase significantly. To date there are only a handful of open source R&D projects focusing on neglected diseases. We wanted to learn from these first movers, their successes and failures, in order to generate a better understanding of how a much-discussed theoretical concept works in practice and may be implemented. A descriptive case study was performed, evaluating two specific R&D projects focused on neglected diseases. CSIR Team India Consortium's Open Source Drug Discovery project (CSIR OSDD) and The Synaptic Leap's Schistosomiasis project (TSLS). Data were gathered from four sources: interviews of participating members (n = 14), a survey of potential members (n = 61), an analysis of the websites and a literature review. Both cases have made significant achievements; however, they have done so in very different ways. CSIR OSDD encourages international collaboration, but its process facilitates contributions from mostly Indian researchers and students. Its processes are formal with each task being reviewed by a mentor (almost always offline) before a result is made public. TSLS, on the other hand, has attracted contributors internationally, albeit significantly fewer than CSIR OSDD. Both have obtained funding used to pay for access to facilities, physical resources and, at times, labor costs. TSLS releases its results into the public domain, whereas CSIR OSDD asserts ownership over its results. Technically TSLS is an open source project, whereas CSIR OSDD is a crowdsourced project. However, both have enabled high quality research at low cost. The critical success factors appear to be clearly

  7. Open Source Drug Discovery in Practice: A Case Study

    PubMed Central

    Årdal, Christine; Røttingen, John-Arne

    2012-01-01

    Background Open source drug discovery offers potential for developing new and inexpensive drugs to combat diseases that disproportionally affect the poor. The concept borrows two principle aspects from open source computing (i.e., collaboration and open access) and applies them to pharmaceutical innovation. By opening a project to external contributors, its research capacity may increase significantly. To date there are only a handful of open source R&D projects focusing on neglected diseases. We wanted to learn from these first movers, their successes and failures, in order to generate a better understanding of how a much-discussed theoretical concept works in practice and may be implemented. Methodology/Principal Findings A descriptive case study was performed, evaluating two specific R&D projects focused on neglected diseases. CSIR Team India Consortium's Open Source Drug Discovery project (CSIR OSDD) and The Synaptic Leap's Schistosomiasis project (TSLS). Data were gathered from four sources: interviews of participating members (n = 14), a survey of potential members (n = 61), an analysis of the websites and a literature review. Both cases have made significant achievements; however, they have done so in very different ways. CSIR OSDD encourages international collaboration, but its process facilitates contributions from mostly Indian researchers and students. Its processes are formal with each task being reviewed by a mentor (almost always offline) before a result is made public. TSLS, on the other hand, has attracted contributors internationally, albeit significantly fewer than CSIR OSDD. Both have obtained funding used to pay for access to facilities, physical resources and, at times, labor costs. TSLS releases its results into the public domain, whereas CSIR OSDD asserts ownership over its results. Conclusions/Significance Technically TSLS is an open source project, whereas CSIR OSDD is a crowdsourced project. However, both have enabled high quality

  8. Comparison of open-source linear programming solvers.

    SciTech Connect

    Gearhart, Jared Lee; Adair, Kristin Lynn; Durfee, Justin David.; Jones, Katherine A.; Martin, Nathaniel; Detry, Richard Joseph

    2013-10-01

    When developing linear programming models, issues such as budget limitations, customer requirements, or licensing may preclude the use of commercial linear programming solvers. In such cases, one option is to use an open-source linear programming solver. A survey of linear programming tools was conducted to identify potential open-source solvers. From this survey, four open-source solvers were tested using a collection of linear programming test problems and the results were compared to IBM ILOG CPLEX Optimizer (CPLEX) [1], an industry standard. The solvers considered were: COIN-OR Linear Programming (CLP) [2], [3], GNU Linear Programming Kit (GLPK) [4], lp_solve [5] and Modular In-core Nonlinear Optimization System (MINOS) [6]. As no open-source solver outperforms CPLEX, this study demonstrates the power of commercial linear programming software. CLP was found to be the top performing open-source solver considered in terms of capability and speed. GLPK also performed well but cannot match the speed of CLP or CPLEX. lp_solve and MINOS were considerably slower and encountered issues when solving several test problems.

  9. Technology collaboration by means of an open source government

    NASA Astrophysics Data System (ADS)

    Berardi, Steven M.

    2009-05-01

    The idea of open source software originally began in the early 1980s, but it never gained widespread support until recently, largely due to the explosive growth of the Internet. Only the Internet has made this kind of concept possible, bringing together millions of software developers from around the world to pool their knowledge. The tremendous success of open source software has prompted many corporations to adopt the culture of open source and thus share information they previously held secret. The government, and specifically the Department of Defense (DoD), could also benefit from adopting an open source culture. In acquiring satellite systems, the DoD often builds walls between program offices, but installing doors between programs can promote collaboration and information sharing. This paper addresses the challenges and consequences of adopting an open source culture to facilitate technology collaboration for DoD space acquisitions. DISCLAIMER: The views presented here are the views of the author, and do not represent the views of the United States Government, United States Air Force, or the Missile Defense Agency.

  10. Calibration of the CDF tile-fiber endplug calorimeters using moving radioactive sources

    SciTech Connect

    Barnes, V.; Laasanen, A.; Pompos, A.; Wilson, M.

    1998-11-01

    The use of moving radioactive gamma sources to assess, calibrate and monitor scintillating tile calorimeters is discussed, and the techniques and equipment are described. The capabilities of the technique are illustrated using Cs{sup 137} sources with the CDF Endplug Upgrade EM and Hadron calorimeters at testbeams and at a cosmic ray test stand. Source measurements of all the tiles in testbeam modules which are exact replicas of the calorimeters, predict the relative responses of EM towers to 50 GeV positrons and muons, and of Hadron towers to 50 GeV pions, with RMS accuracies of 1.3{percent}, 1.8{percent} and 2.0{percent}, respectively. Source measurements will be used in lieu of testbeam measurements for the initial calibration of all towers in the final calorimeters. Source measurements of single tiles are reproducible to 0.4{percent} and will be used to monitor gain changes of the photomultiplier tubes. {copyright} {ital 1998 American Institute of Physics.}

  11. Trends and challenges in open source software (Presentation Video)

    NASA Astrophysics Data System (ADS)

    Aylward, Stephen

    2013-10-01

    Over the past decade, the field of medical image analysis research has undergone a rapid evolution. It was a collection of disconnected efforts that were burdened by mundane coding and file I/O tasks. It is now a collaborative community that has embraced open-source software as a shared foundation, reducing mundane coding and I/O burdens, promoting replicable research, and accelerating the pace of research and product development. This talk will review the history and current state of open-source software in medical image analysis research, will discuss the role of intellectual property in research, and will present emerging trends and technologies relevant to the growing importance of open-source software.

  12. Radioactive sealed sources: Reasonable accountability, exemption, and licensing activity thresholds -- A technical basis

    SciTech Connect

    Lee, D.W.; Shingleton, K.L.

    1996-07-01

    Perhaps owing to their small size and portability, some radiation accidents/incidents have involved radioactive sealed sources (RSSs). As a result, programs for the control and accountability of RSSs have come to be recommended and emplaced that essentially require RSSs to be controlled in a manner different from bulk, unsealed radioactive material. Crucially determining the total number of RSSs for which manpower-intensive radiation protection surveillance is provided is the individual RSS activity above which such surveillance is required and below which such effort is not considered cost effective. Individual RSS activity thresholds are typically determined through scenarios which impart a chosen internal or external limiting dose to Reference Man under specified exposure conditions. The resultant RSS threshold activity levels have meaning commensurate with the assumed scenario exposure parameters, i.e., if they are realistic and technically based. A review of how the Department of Energy (DOE), the International Atomic Energy Agency (IAEA), and the Nuclear Regulatory Commission (NRC) have determined their respective accountability, exemption, and licensing threshold activity values is provided. Finally, a fully explained method using references readily available to practicing health physicists is developed using realistic, technically-based calculation parameters by which RSS threshold activities may be locally generated.

  13. NASA's Earth Imagery Service as Open Source Software

    NASA Astrophysics Data System (ADS)

    De Cesare, C.; Alarcon, C.; Huang, T.; Roberts, J. T.; Rodriguez, J.; Cechini, M. F.; Boller, R. A.; Baynes, K.

    2016-12-01

    The NASA Global Imagery Browse Service (GIBS) is a software system that provides access to an archive of historical and near-real-time Earth imagery from NASA-supported satellite instruments. The imagery itself is open data, and is accessible via standards such as the Open Geospatial Consortium (OGC)'s Web Map Tile Service (WMTS) protocol. GIBS includes three core software projects: The Imagery Exchange (TIE), OnEarth, and the Meta Raster Format (MRF) project. These projects are developed using a variety of open source software, including: Apache HTTPD, GDAL, Mapserver, Grails, Zookeeper, Eclipse, Maven, git, and Apache Commons. TIE has recently been released for open source, and is now available on GitHub. OnEarth, MRF, and their sub-projects have been on GitHub since 2014, and the MRF project in particular receives many external contributions from the community. Our software has been successful beyond the scope of GIBS: the PO.DAAC State of the Ocean and COVERAGE visualization projects reuse components from OnEarth. The MRF source code has recently been incorporated into GDAL, which is a core library in many widely-used GIS software such as QGIS and GeoServer. This presentation will describe the challenges faced in incorporating open software and open data into GIBS, and also showcase GIBS as a platform on which scientists and the general public can build their own applications.

  14. Evaluating open-source cloud computing solutions for geosciences

    NASA Astrophysics Data System (ADS)

    Huang, Qunying; Yang, Chaowei; Liu, Kai; Xia, Jizhe; Xu, Chen; Li, Jing; Gui, Zhipeng; Sun, Min; Li, Zhenglong

    2013-09-01

    Many organizations start to adopt cloud computing for better utilizing computing resources by taking advantage of its scalability, cost reduction, and easy to access characteristics. Many private or community cloud computing platforms are being built using open-source cloud solutions. However, little has been done to systematically compare and evaluate the features and performance of open-source solutions in supporting Geosciences. This paper provides a comprehensive study of three open-source cloud solutions, including OpenNebula, Eucalyptus, and CloudStack. We compared a variety of features, capabilities, technologies and performances including: (1) general features and supported services for cloud resource creation and management, (2) advanced capabilities for networking and security, and (3) the performance of the cloud solutions in provisioning and operating the cloud resources as well as the performance of virtual machines initiated and managed by the cloud solutions in supporting selected geoscience applications. Our study found that: (1) no significant performance differences in central processing unit (CPU), memory and I/O of virtual machines created and managed by different solutions, (2) OpenNebula has the fastest internal network while both Eucalyptus and CloudStack have better virtual machine isolation and security strategies, (3) Cloudstack has the fastest operations in handling virtual machines, images, snapshots, volumes and networking, followed by OpenNebula, and (4) the selected cloud computing solutions are capable for supporting concurrent intensive web applications, computing intensive applications, and small-scale model simulations without intensive data communication.

  15. Bioclipse: an open source workbench for chemo- and bioinformatics

    PubMed Central

    Spjuth, Ola; Helmus, Tobias; Willighagen, Egon L; Kuhn, Stefan; Eklund, Martin; Wagener, Johannes; Murray-Rust, Peter; Steinbeck, Christoph; Wikberg, Jarl ES

    2007-01-01

    Background There is a need for software applications that provide users with a complete and extensible toolkit for chemo- and bioinformatics accessible from a single workbench. Commercial packages are expensive and closed source, hence they do not allow end users to modify algorithms and add custom functionality. Existing open source projects are more focused on providing a framework for integrating existing, separately installed bioinformatics packages, rather than providing user-friendly interfaces. No open source chemoinformatics workbench has previously been published, and no sucessful attempts have been made to integrate chemo- and bioinformatics into a single framework. Results Bioclipse is an advanced workbench for resources in chemo- and bioinformatics, such as molecules, proteins, sequences, spectra, and scripts. It provides 2D-editing, 3D-visualization, file format conversion, calculation of chemical properties, and much more; all fully integrated into a user-friendly desktop application. Editing supports standard functions such as cut and paste, drag and drop, and undo/redo. Bioclipse is written in Java and based on the Eclipse Rich Client Platform with a state-of-the-art plugin architecture. This gives Bioclipse an advantage over other systems as it can easily be extended with functionality in any desired direction. Conclusion Bioclipse is a powerful workbench for bio- and chemoinformatics as well as an advanced integration platform. The rich functionality, intuitive user interface, and powerful plugin architecture make Bioclipse the most advanced and user-friendly open source workbench for chemo- and bioinformatics. Bioclipse is released under Eclipse Public License (EPL), an open source license which sets no constraints on external plugin licensing; it is totally open for both open source plugins as well as commercial ones. Bioclipse is freely available at . PMID:17316423

  16. Bioclipse: an open source workbench for chemo- and bioinformatics.

    PubMed

    Spjuth, Ola; Helmus, Tobias; Willighagen, Egon L; Kuhn, Stefan; Eklund, Martin; Wagener, Johannes; Murray-Rust, Peter; Steinbeck, Christoph; Wikberg, Jarl E S

    2007-02-22

    There is a need for software applications that provide users with a complete and extensible toolkit for chemo- and bioinformatics accessible from a single workbench. Commercial packages are expensive and closed source, hence they do not allow end users to modify algorithms and add custom functionality. Existing open source projects are more focused on providing a framework for integrating existing, separately installed bioinformatics packages, rather than providing user-friendly interfaces. No open source chemoinformatics workbench has previously been published, and no successful attempts have been made to integrate chemo- and bioinformatics into a single framework. Bioclipse is an advanced workbench for resources in chemo- and bioinformatics, such as molecules, proteins, sequences, spectra, and scripts. It provides 2D-editing, 3D-visualization, file format conversion, calculation of chemical properties, and much more; all fully integrated into a user-friendly desktop application. Editing supports standard functions such as cut and paste, drag and drop, and undo/redo. Bioclipse is written in Java and based on the Eclipse Rich Client Platform with a state-of-the-art plugin architecture. This gives Bioclipse an advantage over other systems as it can easily be extended with functionality in any desired direction. Bioclipse is a powerful workbench for bio- and chemoinformatics as well as an advanced integration platform. The rich functionality, intuitive user interface, and powerful plugin architecture make Bioclipse the most advanced and user-friendly open source workbench for chemo- and bioinformatics. Bioclipse is released under Eclipse Public License (EPL), an open source license which sets no constraints on external plugin licensing; it is totally open for both open source plugins as well as commercial ones. Bioclipse is freely available at http://www.bioclipse.net.

  17. Open source tools for ATR development and performance evaluation

    NASA Astrophysics Data System (ADS)

    Baumann, James M.; Dilsavor, Ronald L.; Stubbles, James; Mossing, John C.

    2002-07-01

    Early in almost every engineering project, a decision must be made about tools; should I buy off-the-shelf tools or should I develop my own. Either choice can involve significant cost and risk. Off-the-shelf tools may be readily available, but they can be expensive to purchase and to maintain licenses, and may not be flexible enough to satisfy all project requirements. On the other hand, developing new tools permits great flexibility, but it can be time- (and budget-) consuming, and the end product still may not work as intended. Open source software has the advantages of both approaches without many of the pitfalls. This paper examines the concept of open source software, including its history, unique culture, and informal yet closely followed conventions. These characteristics influence the quality and quantity of software available, and ultimately its suitability for serious ATR development work. We give an example where Python, an open source scripting language, and OpenEV, a viewing and analysis tool for geospatial data, have been incorporated into ATR performance evaluation projects. While this case highlights the successful use of open source tools, we also offer important insight into risks associated with this approach.

  18. Human genome and open source: balancing ethics and business.

    PubMed

    Marturano, Antonio

    2011-01-01

    The Human Genome Project has been completed thanks to a massive use of computer techniques, as well as the adoption of the open-source business and research model by the scientists involved. This model won over the proprietary model and allowed a quick propagation and feedback of research results among peers. In this paper, the author will analyse some ethical and legal issues emerging by the use of such computer model in the Human Genome property rights. The author will argue that the Open Source is the best business model, as it is able to balance business and human rights perspectives.

  19. Open Source Next Generation Visualization Software for Interplanetary Missions

    NASA Technical Reports Server (NTRS)

    Trimble, Jay; Rinker, George

    2016-01-01

    Mission control is evolving quickly, driven by the requirements of new missions, and enabled by modern computing capabilities. Distributed operations, access to data anywhere, data visualization for spacecraft analysis that spans multiple data sources, flexible reconfiguration to support multiple missions, and operator use cases, are driving the need for new capabilities. NASA's Advanced Multi-Mission Operations System (AMMOS), Ames Research Center (ARC) and the Jet Propulsion Laboratory (JPL) are collaborating to build a new generation of mission operations software for visualization, to enable mission control anywhere, on the desktop, tablet and phone. The software is built on an open source platform that is open for contributions (http://nasa.github.io/openmct).

  20. Freeing Crop Genetics through the Open Source Seed Initiative

    PubMed Central

    Luby, Claire H.; Goldman, Irwin L.

    2016-01-01

    For millennia, seeds have been freely available to use for farming and plant breeding without restriction. Within the past century, however, intellectual property rights (IPRs) have threatened this tradition. In response, a movement has emerged to counter the trend toward increasing consolidation of control and ownership of plant germplasm. One effort, the Open Source Seed Initiative (OSSI, www.osseeds.org), aims to ensure access to crop genetic resources by embracing an open source mechanism that fosters exchange and innovation among farmers, plant breeders, and seed companies. Plant breeders across many sectors have taken the OSSI Pledge to create a protected commons of plant germplasm for future generations. PMID:27093567

  1. Open source and DIY hardware for DNA nanotechnology labs

    PubMed Central

    Damase, Tulsi R.; Stephens, Daniel; Spencer, Adam; Allen, Peter B.

    2015-01-01

    A set of instruments and specialized equipment is necessary to equip a laboratory to work with DNA. Reducing the barrier to entry for DNA manipulation should enable and encourage new labs to enter the field. We present three examples of open source/DIY technology with significantly reduced costs relative to commercial equipment. This includes a gel scanner, a horizontal PAGE gel mold, and a homogenizer for generating DNA-coated particles. The overall cost savings obtained by using open source/DIY equipment was between 50 and 90%. PMID:26457320

  2. Open-source software for radiologists: a primer.

    PubMed

    Scarsbrook, A F

    2007-02-01

    There is a wide variety of free (open-source) software available via the Internet which may be of interest to radiologists. This article will explore the use of open-source software in radiology to help streamline academic workflow and improve general efficiency and effectiveness by highlighting a number of the most useful applications currently available. These include really simple syndication applications, e-mail management, spreadsheet, word processing, database and presentation packages, as well as image and video editing software. How to incorporate this software into radiological practice will also be discussed.

  3. Open source and DIY hardware for DNA nanotechnology labs.

    PubMed

    Damase, Tulsi R; Stephens, Daniel; Spencer, Adam; Allen, Peter B

    A set of instruments and specialized equipment is necessary to equip a laboratory to work with DNA. Reducing the barrier to entry for DNA manipulation should enable and encourage new labs to enter the field. We present three examples of open source/DIY technology with significantly reduced costs relative to commercial equipment. This includes a gel scanner, a horizontal PAGE gel mold, and a homogenizer for generating DNA-coated particles. The overall cost savings obtained by using open source/DIY equipment was between 50 and 90%.

  4. OpenMx: An Open Source Extended Structural Equation Modeling Framework.

    PubMed

    Boker, Steven; Neale, Michael; Maes, Hermine; Wilde, Michael; Spiegel, Michael; Brick, Timothy; Spies, Jeffrey; Estabrook, Ryne; Kenny, Sarah; Bates, Timothy; Mehta, Paras; Fox, John

    2011-04-01

    OpenMx is free, full-featured, open source, structural equation modeling (SEM) software. OpenMx runs within the R statistical programming environment on Windows, Mac OS-X, and Linux computers. The rationale for developing OpenMx is discussed along with the philosophy behind the user interface. The OpenMx data structures are introduced - these novel structures define the user interface framework and provide new opportunities for model specification. Two short example scripts for the specification and fitting of a confirmatory factor model are next presented. We end with an abbreviated list of modeling applications available in OpenMx 1.0 and a discussion of directions for future development.

  5. Analysis of source term modeling for low-level radioactive waste performance assessments

    SciTech Connect

    Icenhour, A.S.

    1995-03-01

    Site-specific radiological performance assessments are required for the disposal of low-level radioactive waste (LLW) at both commercial and US Department of Energy facilities. This work explores source term modeling of LLW disposal facilities by using two state-of-the-art computer codes, SOURCEI and SOURCE2. An overview of the performance assessment methodology is presented, and the basic processes modeled in the SOURCE1 and SOURCE2 codes are described. Comparisons are made between the two advective models for a variety of radionuclides, transport parameters, and waste-disposal technologies. These comparisons show that, in general, the zero-order model predicts undecayed cumulative fractions leached that are slightly greater than or equal to those of the first-order model. For long-lived radionuclides, results from the two models eventually reach the same value. By contrast, for short-lived radionuclides, the zero-order model predicts a slightly higher undecayed cumulative fraction leached than does the first-order model. A new methodology, based on sensitivity and uncertainty analyses, is developed for predicting intruder scenarios. This method is demonstrated for {sup 137}Cs in a tumulus-type disposal facility. The sensitivity and uncertainty analyses incorporate input-parameter uncertainty into the evaluation of a potential time of intrusion and the remaining radionuclide inventory. Finally, conclusions from this study are presented, and recommendations for continuing work are made.

  6. OpenFLUID: an open-source software environment for modelling fluxes in landscapes

    NASA Astrophysics Data System (ADS)

    Fabre, Jean-Christophe; Rabotin, Michaël; Crevoisier, David; Libres, Aline; Dagès, Cécile; Moussa, Roger; Lagacherie, Philippe; Raclot, Damien; Voltz, Marc

    2013-04-01

    Integrative landscape functioning has become a common concept in environmental management. Landscapes are complex systems where many processes interact in time and space. In agro-ecosystems, these processes are mainly physical processes, including hydrological-processes, biological processes and human activities. Modelling such systems requires an interdisciplinary approach, coupling models coming from different disciplines, developed by different teams. In order to support collaborative works, involving many models coupled in time and space for integrative simulations, an open software modelling platform is a relevant answer. OpenFLUID is an open source software platform for modelling landscape functioning, mainly focused on spatial fluxes. It provides an advanced object-oriented architecture allowing to i) couple models developed de novo or from existing source code, and which are dynamically plugged to the platform, ii) represent landscapes as hierarchical graphs, taking into account multi-scale, spatial heterogeneities and landscape objects connectivity, iii) run and explore simulations in many ways : using the OpenFLUID software interfaces for users (command line interface, graphical user interface), or using external applications such as GNU R through the provided ROpenFLUID package. OpenFLUID is developed in C++ and relies on open source libraries only (Boost, libXML2, GLib/GTK, OGR/GDAL, …). For modelers and developers, OpenFLUID provides a dedicated environment for model development, which is based on an open source toolchain, including the Eclipse editor, the GCC compiler and the CMake build system. OpenFLUID is distributed under the GPLv3 open source license, with a special exception allowing to plug existing models licensed under any license. It is clearly in the spirit of sharing knowledge and favouring collaboration in a community of modelers. OpenFLUID has been involved in many research applications, such as modelling of hydrological network

  7. Virtual Machine for Computer Forensics - the Open Source Perspective

    NASA Astrophysics Data System (ADS)

    Bem, Derek

    In this paper we discuss the potential role of virtual environments in the analysis phase of computer forensics investigations. We argue that commercial closed source computer forensics software has certain limitations, and we propose a method which may lead to gradual shift to open source software (OSS). A brief overview of virtual environments and open source software tools is presented and discussed. Further we identify current limitations of virtual environments leading to the conclusion that the method is very promising, but at this point in time it can not replace conventional techniques of computer forensics analysis. We demonstrate that using Virtual Machines (VM) in Linux environments can complement the conventional techniques, and often can bring faster and verifiable results not dependent on proprietary, close source tools.

  8. OpenMC In Situ Source Convergence Detection

    SciTech Connect

    Aldrich, Garrett Allen; Dutta, Soumya; Woodring, Jonathan Lee

    2016-05-07

    We designed and implemented an in situ version of particle source convergence for the OpenMC particle transport simulator. OpenMC is a Monte Carlo based-particle simulator for neutron criticality calculations. For the transport simulation to be accurate, source particles must converge on a spatial distribution. Typically, convergence is obtained by iterating the simulation by a user-settable, fixed number of steps, and it is assumed that convergence is achieved. We instead implement a method to detect convergence, using the stochastic oscillator for identifying convergence of source particles based on their accumulated Shannon Entropy. Using our in situ convergence detection, we are able to detect and begin tallying results for the full simulation once the proper source distribution has been confirmed. Our method ensures that the simulation is not started too early, by a user setting too optimistic parameters, or too late, by setting too conservative a parameter.

  9. A straightforward implantation method of radioactive sources by means of the Leksell frame.

    PubMed

    Koken, P W; de Vos, R J

    1995-01-01

    Stereotactic brachytherapy of cerebral gliomas often involves insertion of catheters through the tumor bed. We adopted the hexagonal tube configuration around a central tube. Such a configuration is applicable to most commonly occurring brain tumors. In order to perform a low-cost, accurate and straightforward implantation, a robust mathematical derivation of all relevant formulas is used to transform CT coordinates to Leksell frame coordinates, including derivations for the two stereotactic angles. The coordinates of the seven tubes (which are essential if no template is available) and the length of the radioactive source are also derived, and an example is presented. The calculations have been implemented on a personal computer (Intel processor 386 or higher). Additional options, such as choosing other stereotactic angles than the calculated ones and rotating the tube configuration around the central tube, are integrated into the program.

  10. Calibration Of An Active Mammosite Using A Low Activity Sr-90 Radioactive Source

    NASA Astrophysics Data System (ADS)

    Winston, Jacquelyn

    2006-03-01

    The latest involvement of the Brachytherapy research group of the medical physics program at Hampton University is in the development of a scintillator fiber based detector for the breast cancer specific Mammosite (balloon device) from Cytyc Inc. Recent data were acquired at a local hospital to evaluate the possibility of measuring the dose distribution during breast Brachytherapy cancer treatments with this device. Since sub-millimeter accuracy in position is required, precision of the device relies on the accurate calibration of the scintillating fiber element. As part of a collaboration work, data were acquired for that purpose at Hampton University and subsequently analyzed at Morgan State University. An 8 mm diameter strontium-90 radioactive field source with a low activity of 25 μCi was used along with a dedicated LabView data acquisition system. We will discuss the data collected and address some of the features of this novel system.

  11. Calibration Of An Active Mammosite Using A Low Activity Sr-90 Radioactive Source

    NASA Astrophysics Data System (ADS)

    Winston, Jacquelyn

    2007-03-01

    The latest involvement of the Brachytherapy research group of the medical physics program at Hampton University is in the development of a scintillating fiber based detector for the breast cancer specific Mammosite (balloon device) from Cytyc Inc. Recent data were acquired at a local hospital to evaluate the possibility of measuring the dose distribution during breast Brachytherapy cancer treatments with this device. Since sub-millimeter accuracy in position is required, precision of the device relies on the accurate calibration of the scintillating fiber element. As part of a collaboration work, data were acquired for that purpose at Hampton University and subsequently analyzed at Morgan State University. An 8 mm diameter strontium-90 radioactive field source with a low activity of 25 μCi was used along with a dedicated LabView data acquisition system. We will discuss the data collected and address some of the features of this novel system.

  12. NASA's Open Source Software for Serving and Viewing Global Imagery

    NASA Astrophysics Data System (ADS)

    Roberts, J. T.; Alarcon, C.; Boller, R. A.; Cechini, M. F.; Gunnoe, T.; Hall, J. R.; Huang, T.; Ilavajhala, S.; King, J.; McGann, M.; Murphy, K. J.; Plesea, L.; Schmaltz, J. E.; Thompson, C. K.

    2014-12-01

    The NASA Global Imagery Browse Services (GIBS), which provide open access to an enormous archive of historical and near real time imagery from NASA supported satellite instruments, has also released most of its software to the general public as open source. The software packages, originally developed at the Jet Propulsion Laboratory and Goddard Space Flight Center, currently include: 1) the Meta Raster Format (MRF) GDAL driver—GDAL support for a specialized file format used by GIBS to store imagery within a georeferenced tile pyramid for exceptionally fast access; 2) OnEarth—a high performance Apache module used to serve tiles from MRF files via common web service protocols; 3) Worldview—a web mapping client to interactively browse global, full-resolution satellite imagery and download underlying data. Examples that show developers how to use GIBS with various mapping libraries and programs are also available. This stack of tools is intended to provide an out-of-the-box solution for serving any georeferenced imagery.Scientists as well as the general public can use the open source software for their own applications such as developing visualization interfaces for improved scientific understanding and decision support, hosting a repository of browse images to help find and discover satellite data, or accessing large datasets of geo-located imagery in an efficient manner. Open source users may also contribute back to NASA and the wider Earth Science community by taking an active role in evaluating and developing the software.This presentation will discuss the experiences of developing the software in an open source environment and useful lessons learned. To access the open source software repositories, please visit: https://github.com/nasa-gibs/

  13. Commissioning and field tests of a van-mounted system for the detection of radioactive sources and Special Nuclear Material

    SciTech Connect

    Cester, D.; Lunardon, M.; Stevanato, L.; Viesti, G.; Chandra, R.; Davatz, G.; Friederich, H.; Gendotti, U.; Murer, D.; Swiderski, L.; Moszynski, M.; Resnati, F.; Rubbia, A.; Iovene, A.; Petrucci, S.; Tintori, C.; Caccia, M.; Chmill, V.; Santoro, R.; Martemyianov, A.; Doherty, M.; Christodoulou, G.; Stainer, T.; Touramanis, C.

    2015-07-01

    MODES SNM project aimed to carry out technical research in order to develop a prototype for a mobile, modular detection system for radioactive sources and Special Nuclear Materials (SNM). Its main goal was to deliver a tested prototype of a modular mobile system capable of passively detecting weak or shielded radioactive sources with accuracy higher than that of currently available systems. By the end of the project all the objectives have been successfully achieved. Results from the laboratory commissioning and the field tests will be presented. (authors)

  14. Securing the metal recycling chain for the steel industry by detecting orphan radioactive sources in scrap metal

    SciTech Connect

    Pesente, S.; Benettoni, M.; Checchia, P.; Conti, E.; Gonella, F.; Nebbia, G.; Vanini, S.; Viesti, G.; Zumerle, G.; Bonomi, G.; Zenoni, A.; Calvini, P.; Squarcia, S.

    2010-08-04

    Experimental tests are reported for the detection of the heavy metal shielding of orphan sources hidden inside scrap metal by using a recently developed muon tomography system. Shielded sources do not trigger alarm in radiation portal commonly employed at the entrance of steel industry using scrap metal. Future systems integrating radiation portals with muon tomography inspection gates will substantially reduce the possibility of accidental melting of radioactive sources securing the use of recycled metal.

  15. Securing the metal recycling chain for the steel industry by detecting orphan radioactive sources in scrap metal

    NASA Astrophysics Data System (ADS)

    Pesente, S.; Vanini, S.; Benettoni, M.; Bonomi, G.; Calvini, P.; Checchia, P.; Conti, E.; Gonella, F.; Nebbia, G.; Squarcia, S.; Viesti, G.; Zenoni, A.; Zumerle, G.

    2010-08-01

    Experimental tests are reported for the detection of the heavy metal shielding of orphan sources hidden inside scrap metal by using a recently developed muon tomography system. Shielded sources do not trigger alarm in radiation portal commonly employed at the entrance of steel industry using scrap metal. Future systems integrating radiation portals with muon tomography inspection gates will substantially reduce the possibility of accidental melting of radioactive sources securing the use of recycled metal.

  16. Ion beam production and study of radioactive isotopes with the laser ion source at ISOLDE

    NASA Astrophysics Data System (ADS)

    Fedosseev, Valentin; Chrysalidis, Katerina; Day Goodacre, Thomas; Marsh, Bruce; Rothe, Sebastian; Seiffert, Christoph; Wendt, Klaus

    2017-08-01

    At ISOLDE the majority of radioactive ion beams are produced using the resonance ionization laser ion source (RILIS). This ion source is based on resonant excitation of atomic transitions by wavelength tunable laser radiation. Since its installation at the ISOLDE facility in 1994, the RILIS laser setup has been developed into a versatile remotely operated laser system comprising state-of-the-art solid state and dye lasers capable of generating multiple high quality laser beams at any wavelength in the range of 210-950 nm. A continuous programme of atomic ionization scheme development at CERN and at other laboratories has gradually increased the number of RILIS-ionized elements. At present, isotopes of 40 different elements have been selectively laser-ionized by the ISOLDE RILIS. Studies related to the optimization of the laser-atom interaction environment have yielded new laser ion source types: the laser ion source and trap and the versatile arc discharge and laser ion source. Depending on the specific experimental requirements for beam purity or versatility to switch between different ionization mechanisms, these may offer a favourable alternative to the standard hot metal cavity configuration. In addition to its main purpose of ion beam production, the RILIS is used for laser spectroscopy of radioisotopes. In an ongoing experimental campaign the isotope shifts and hyperfine structure of long isotopic chains have been measured by the extremely sensitive in-source laser spectroscopy method. The studies performed in the lead region were focused on nuclear deformation and shape coexistence effects around the closed proton shell Z = 82. The paper describes the functional principles of the RILIS, the current status of the laser system and demonstrated capabilities for the production of different ion beams including the high-resolution studies of short-lived isotopes and other applications of RILIS lasers for ISOLDE experiments. This article belongs to the Focus on

  17. The Case for Open Source Software in Digital Forensics

    NASA Astrophysics Data System (ADS)

    Zanero, Stefano; Huebner, Ewa

    In this introductory chapter we discuss the importance of the use of open source software (OSS), and in particular of free software (FLOSS) in computer forensics investigations including the identification, capture, preservation and analysis of digital evidence; we also discuss the importance of OSS in computer forensics

  18. Open Source Projects in Software Engineering Education: A Mapping Study

    ERIC Educational Resources Information Center

    Nascimento, Debora M. C.; Almeida Bittencourt, Roberto; Chavez, Christina

    2015-01-01

    Context: It is common practice in academia to have students work with "toy" projects in software engineering (SE) courses. One way to make such courses more realistic and reduce the gap between academic courses and industry needs is getting students involved in open source projects (OSP) with faculty supervision. Objective: This study…

  19. Chinese Localisation of Evergreen: An Open Source Integrated Library System

    ERIC Educational Resources Information Center

    Zou, Qing; Liu, Guoying

    2009-01-01

    Purpose: The purpose of this paper is to investigate various issues related to Chinese language localisation in Evergreen, an open source integrated library system (ILS). Design/methodology/approach: A Simplified Chinese version of Evergreen was implemented and tested and various issues such as encoding, indexing, searching, and sorting…

  20. Faculty/Student Surveys Using Open Source Software

    ERIC Educational Resources Information Center

    Kaceli, Sali

    2004-01-01

    This session will highlight an easy survey package which lets non-technical users create surveys, administer surveys, gather results, and view statistics. This is an open source application all managed online via a web browser. By using phpESP, the faculty is given the freedom of creating various surveys at their convenience and link them to their…

  1. The Value of Open Source Software Tools in Qualitative Research

    ERIC Educational Resources Information Center

    Greenberg, Gary

    2011-01-01

    In an era of global networks, researchers using qualitative methods must consider the impact of any software they use on the sharing of data and findings. In this essay, I identify researchers' main areas of concern regarding the use of qualitative software packages for research. I then examine how open source software tools, wherein the publisher…

  2. Current challenges in open-source bioimage informatics.

    PubMed

    Cardona, Albert; Tomancak, Pavel

    2012-06-28

    We discuss the advantages and challenges of the open-source strategy in biological image analysis and argue that its full impact will not be realized without better support and recognition of software engineers' contributions to the biological sciences and more support of this development model from funders and institutions.

  3. Chinese Localisation of Evergreen: An Open Source Integrated Library System

    ERIC Educational Resources Information Center

    Zou, Qing; Liu, Guoying

    2009-01-01

    Purpose: The purpose of this paper is to investigate various issues related to Chinese language localisation in Evergreen, an open source integrated library system (ILS). Design/methodology/approach: A Simplified Chinese version of Evergreen was implemented and tested and various issues such as encoding, indexing, searching, and sorting…

  4. Open Source Projects in Software Engineering Education: A Mapping Study

    ERIC Educational Resources Information Center

    Nascimento, Debora M. C.; Almeida Bittencourt, Roberto; Chavez, Christina

    2015-01-01

    Context: It is common practice in academia to have students work with "toy" projects in software engineering (SE) courses. One way to make such courses more realistic and reduce the gap between academic courses and industry needs is getting students involved in open source projects (OSP) with faculty supervision. Objective: This study…

  5. [Osirix: free and open-source software for medical imagery].

    PubMed

    Jalbert, F; Paoli, J R

    2008-02-01

    Osirix is a tool for diagnostic imagery, teaching and research tasks, which presents many possible applications in maxillofacial and oral surgery. It is a free and open-source software developed on Mac OS X (Apple) by Dr Antoine Rosset and Dr Osman Ratib, in the department of radiology and medical computing of Geneva (Switzerland).

  6. Is Open Source the ERP Cure-All?

    ERIC Educational Resources Information Center

    Panettieri, Joseph C.

    2008-01-01

    Conventional and hosted applications thrive, but open source ERP (enterprise resource planning) is coming on strong. In many ways, the evolution of the ERP market is littered with ironies. When Oracle began buying up customer relationship management (CRM) and ERP companies, some universities worried that they would be left with fewer choices and…

  7. Is Open Source the ERP Cure-All?

    ERIC Educational Resources Information Center

    Panettieri, Joseph C.

    2008-01-01

    Conventional and hosted applications thrive, but open source ERP (enterprise resource planning) is coming on strong. In many ways, the evolution of the ERP market is littered with ironies. When Oracle began buying up customer relationship management (CRM) and ERP companies, some universities worried that they would be left with fewer choices and…

  8. Digital Preservation in Open-Source Digital Library Software

    ERIC Educational Resources Information Center

    Madalli, Devika P.; Barve, Sunita; Amin, Saiful

    2012-01-01

    Digital archives and digital library projects are being initiated all over the world for materials of different formats and domains. To organize, store, and retrieve digital content, many libraries as well as archiving centers are using either proprietary or open-source software. While it is accepted that print media can survive for centuries with…

  9. Higher Education Sub-Cultures and Open Source Adoption

    ERIC Educational Resources Information Center

    van Rooij, Shahron Williams

    2011-01-01

    Successful adoption of new teaching and learning technologies in higher education requires the consensus of two sub-cultures, namely the technologist sub-culture and the academic sub-culture. This paper examines trends in adoption of open source software (OSS) for teaching and learning by comparing the results of a 2009 survey of 285 Chief…

  10. Critical Analysis on Open Source LMSs Using FCA

    ERIC Educational Resources Information Center

    Sumangali, K.; Kumar, Ch. Aswani

    2013-01-01

    The objective of this paper is to apply Formal Concept Analysis (FCA) to identify the best open source Learning Management System (LMS) for an E-learning environment. FCA is a mathematical framework that represents knowledge derived from a formal context. In constructing the formal context, LMSs are treated as objects and their features as…

  11. Open Source Software: Fully Featured vs. "The Devil You Know"

    ERIC Educational Resources Information Center

    Hotrum, Michael; Ludwig, Brian; Baggaley, Jon

    2005-01-01

    The "ILIAS" learning management system (LMS) was evaluated, following its favourable rating in an independent evaluation study of open source software (OSS) products. The current review found "ILIAS" to have numerous features of value to distance education (DE) students and teachers, as well as problems for consideration in the…

  12. Critical Analysis on Open Source LMSs Using FCA

    ERIC Educational Resources Information Center

    Sumangali, K.; Kumar, Ch. Aswani

    2013-01-01

    The objective of this paper is to apply Formal Concept Analysis (FCA) to identify the best open source Learning Management System (LMS) for an E-learning environment. FCA is a mathematical framework that represents knowledge derived from a formal context. In constructing the formal context, LMSs are treated as objects and their features as…

  13. Higher Education Sub-Cultures and Open Source Adoption

    ERIC Educational Resources Information Center

    van Rooij, Shahron Williams

    2011-01-01

    Successful adoption of new teaching and learning technologies in higher education requires the consensus of two sub-cultures, namely the technologist sub-culture and the academic sub-culture. This paper examines trends in adoption of open source software (OSS) for teaching and learning by comparing the results of a 2009 survey of 285 Chief…

  14. The Value of Open Source Software Tools in Qualitative Research

    ERIC Educational Resources Information Center

    Greenberg, Gary

    2011-01-01

    In an era of global networks, researchers using qualitative methods must consider the impact of any software they use on the sharing of data and findings. In this essay, I identify researchers' main areas of concern regarding the use of qualitative software packages for research. I then examine how open source software tools, wherein the publisher…

  15. Digital Preservation in Open-Source Digital Library Software

    ERIC Educational Resources Information Center

    Madalli, Devika P.; Barve, Sunita; Amin, Saiful

    2012-01-01

    Digital archives and digital library projects are being initiated all over the world for materials of different formats and domains. To organize, store, and retrieve digital content, many libraries as well as archiving centers are using either proprietary or open-source software. While it is accepted that print media can survive for centuries with…

  16. Teaching Undergraduate Software Engineering Using Open Source Development Tools

    DTIC Science & Technology

    2012-01-01

    on Computer Science Education (SIGCSE 󈧏), 153- 158. Pandey, R. (2009). Exploiting web resources for teaching /learning best software design tips...Issues in Informing Science and Information Technology Volume 9, 2012 Teaching Undergraduate Software Engineering Using Open Source Development...multi-course sequence, to teach students both the theoretical concepts of soft- ware development as well as the practical aspects of developing software

  17. Computer aided die design: A new open-source methodology

    NASA Astrophysics Data System (ADS)

    Carneiro, Olga Sousa; Rajkumar, Ananth; Ferrás, Luís Lima; Fernandes, Célio; Sacramento, Alberto; Nóbrega, João Miguel

    2017-05-01

    In this work we present a detailed description of how to use open source based computer codes to aid the design of complex profile extrusion dies, aiming to improve its flow distribution. The work encompasses the description of the overall open-source die design methodology, the implementation of the energy conservation equation in an existing OpenFOAM® solver, which will be then capable of simulating the steady non-isothermal flow of an incompressible generalized Newtonian fluid, and two case studies to illustrate the capabilities and practical usefulness of the developed methodology. The results obtained with these case studies, used to solve real industrial problems, demonstrate that the computational design aid is an excellent alternative, from economical and technical points of view, to the experimental trial-and-error procedure commonly used in industry.

  18. Investigating the Acquisition of Software Systems that Rely on Open Architecture and Open Source Software

    DTIC Science & Technology

    2010-03-01

    Investigating the Acquisition of Software Systems that Rely on Open Architecture and Open Source Software March 2010 by Dr. Walt Scacchi ...including project teams operating as virtual organizations [ Scacchi 2002, 2007]. There is a basic need to understand how to identify an optimal mix of OSS...ecosystem. However, the relationship among OA, OSS, requirements, and acquisition is poorly understood [cf. Scacchi 2002, Naegle and Petross 2007

  19. Analyzing huge pathology images with open source software

    PubMed Central

    2013-01-01

    Background Digital pathology images are increasingly used both for diagnosis and research, because slide scanners are nowadays broadly available and because the quantitative study of these images yields new insights in systems biology. However, such virtual slides build up a technical challenge since the images occupy often several gigabytes and cannot be fully opened in a computer’s memory. Moreover, there is no standard format. Therefore, most common open source tools such as ImageJ fail at treating them, and the others require expensive hardware while still being prohibitively slow. Results We have developed several cross-platform open source software tools to overcome these limitations. The NDPITools provide a way to transform microscopy images initially in the loosely supported NDPI format into one or several standard TIFF files, and to create mosaics (division of huge images into small ones, with or without overlap) in various TIFF and JPEG formats. They can be driven through ImageJ plugins. The LargeTIFFTools achieve similar functionality for huge TIFF images which do not fit into RAM. We test the performance of these tools on several digital slides and compare them, when applicable, to standard software. A statistical study of the cells in a tissue sample from an oligodendroglioma was performed on an average laptop computer to demonstrate the efficiency of the tools. Conclusions Our open source software enables dealing with huge images with standard software on average computers. They are cross-platform, independent of proprietary libraries and very modular, allowing them to be used in other open source projects. They have excellent performance in terms of execution speed and RAM requirements. They open promising perspectives both to the clinician who wants to study a single slide and to the research team or data centre who do image analysis of many slides on a computer cluster. Virtual slides The virtual slide(s) for this article can be found here: http

  20. Analyzing huge pathology images with open source software.

    PubMed

    Deroulers, Christophe; Ameisen, David; Badoual, Mathilde; Gerin, Chloé; Granier, Alexandre; Lartaud, Marc

    2013-06-06

    Digital pathology images are increasingly used both for diagnosis and research, because slide scanners are nowadays broadly available and because the quantitative study of these images yields new insights in systems biology. However, such virtual slides build up a technical challenge since the images occupy often several gigabytes and cannot be fully opened in a computer's memory. Moreover, there is no standard format. Therefore, most common open source tools such as ImageJ fail at treating them, and the others require expensive hardware while still being prohibitively slow. We have developed several cross-platform open source software tools to overcome these limitations. The NDPITools provide a way to transform microscopy images initially in the loosely supported NDPI format into one or several standard TIFF files, and to create mosaics (division of huge images into small ones, with or without overlap) in various TIFF and JPEG formats. They can be driven through ImageJ plugins. The LargeTIFFTools achieve similar functionality for huge TIFF images which do not fit into RAM. We test the performance of these tools on several digital slides and compare them, when applicable, to standard software. A statistical study of the cells in a tissue sample from an oligodendroglioma was performed on an average laptop computer to demonstrate the efficiency of the tools. Our open source software enables dealing with huge images with standard software on average computers. They are cross-platform, independent of proprietary libraries and very modular, allowing them to be used in other open source projects. They have excellent performance in terms of execution speed and RAM requirements. They open promising perspectives both to the clinician who wants to study a single slide and to the research team or data centre who do image analysis of many slides on a computer cluster. The virtual slide(s) for this article can be found here

  1. Open Ephys: an open-source, plugin-based platform for multichannel electrophysiology

    NASA Astrophysics Data System (ADS)

    Siegle, Joshua H.; Cuevas López, Aarón; Patel, Yogi A.; Abramov, Kirill; Ohayon, Shay; Voigts, Jakob

    2017-08-01

    Objective. Closed-loop experiments, in which causal interventions are conditioned on the state of the system under investigation, have become increasingly common in neuroscience. Such experiments can have a high degree of explanatory power, but they require a precise implementation that can be difficult to replicate across laboratories. We sought to overcome this limitation by building open-source software that makes it easier to develop and share algorithms for closed-loop control. Approach. We created the Open Ephys GUI, an open-source platform for multichannel electrophysiology experiments. In addition to the standard ‘open-loop’ visualization and recording functionality, the GUI also includes modules for delivering feedback in response to events detected in the incoming data stream. Importantly, these modules can be built and shared as plugins, which makes it possible for users to extend the functionality of the GUI through a simple API, without having to understand the inner workings of the entire application. Main results. In combination with low-cost, open-source hardware for amplifying and digitizing neural signals, the GUI has been used for closed-loop experiments that perturb the hippocampal theta rhythm in a phase-specific manner. Significance. The Open Ephys GUI is the first widely used application for multichannel electrophysiology that leverages a plugin-based workflow. We hope that it will lower the barrier to entry for electrophysiologists who wish to incorporate real-time feedback into their research.

  2. Open Drug Discovery Toolkit (ODDT): a new open-source player in the drug discovery field.

    PubMed

    Wójcikowski, Maciej; Zielenkiewicz, Piotr; Siedlecki, Pawel

    2015-01-01

    There has been huge progress in the open cheminformatics field in both methods and software development. Unfortunately, there has been little effort to unite those methods and software into one package. We here describe the Open Drug Discovery Toolkit (ODDT), which aims to fulfill the need for comprehensive and open source drug discovery software. The Open Drug Discovery Toolkit was developed as a free and open source tool for both computer aided drug discovery (CADD) developers and researchers. ODDT reimplements many state-of-the-art methods, such as machine learning scoring functions (RF-Score and NNScore) and wraps other external software to ease the process of developing CADD pipelines. ODDT is an out-of-the-box solution designed to be easily customizable and extensible. Therefore, users are strongly encouraged to extend it and develop new methods. We here present three use cases for ODDT in common tasks in computer-aided drug discovery. Open Drug Discovery Toolkit is released on a permissive 3-clause BSD license for both academic and industrial use. ODDT's source code, additional examples and documentation are available on GitHub (https://github.com/oddt/oddt).

  3. Open Ephys: an open-source, plugin-based platform for multichannel electrophysiology.

    PubMed

    Siegle, Joshua H; López, Aarón Cuevas; Patel, Yogi A; Abramov, Kirill; Ohayon, Shay; Voigts, Jakob

    2017-02-07

    Closed-loop experiments, in which causal interventions are conditioned on the state of the system under investigation, have become increasingly common in neuroscience. Such experiments can have a high degree of explanatory power, but they require a precise implementation that can be difficult to replicate across laboratories. We sought to overcome this limitation by building open-source software that makes it easier to develop and share algorithms for closed-loop control. We created the Open Ephys GUI, an open-source platform for multichannel electrophysiology experiments. In addition to the standard 'open-loop' visualization and recording functionality, the GUI also includes modules for delivering feedback in response to events detected in the incoming data stream. Importantly, these modules can be built and shared as plugins, which makes it possible for users to extend the functionality of the GUI through a simple API, without having to understand the inner workings of the entire application. In combination with low-cost, open-source hardware for amplifying and digitizing neural signals, the GUI has been used for closed-loop experiments that perturb the hippocampal theta rhythm in a phase-specific manner. The Open Ephys GUI is the first widely used application for multichannel electrophysiology that leverages a plugin-based workflow. We hope that it will lower the barrier to entry for electrophysiologists who wish to incorporate real-time feedback into their research.

  4. OpenMS: a flexible open-source software platform for mass spectrometry data analysis.

    PubMed

    Röst, Hannes L; Sachsenberg, Timo; Aiche, Stephan; Bielow, Chris; Weisser, Hendrik; Aicheler, Fabian; Andreotti, Sandro; Ehrlich, Hans-Christian; Gutenbrunner, Petra; Kenar, Erhan; Liang, Xiao; Nahnsen, Sven; Nilse, Lars; Pfeuffer, Julianus; Rosenberger, George; Rurik, Marc; Schmitt, Uwe; Veit, Johannes; Walzer, Mathias; Wojnar, David; Wolski, Witold E; Schilling, Oliver; Choudhary, Jyoti S; Malmström, Lars; Aebersold, Ruedi; Reinert, Knut; Kohlbacher, Oliver

    2016-08-30

    High-resolution mass spectrometry (MS) has become an important tool in the life sciences, contributing to the diagnosis and understanding of human diseases, elucidating biomolecular structural information and characterizing cellular signaling networks. However, the rapid growth in the volume and complexity of MS data makes transparent, accurate and reproducible analysis difficult. We present OpenMS 2.0 (http://www.openms.de), a robust, open-source, cross-platform software specifically designed for the flexible and reproducible analysis of high-throughput MS data. The extensible OpenMS software implements common mass spectrometric data processing tasks through a well-defined application programming interface in C++ and Python and through standardized open data formats. OpenMS additionally provides a set of 185 tools and ready-made workflows for common mass spectrometric data processing tasks, which enable users to perform complex quantitative mass spectrometric analyses with ease.

  5. openBIS ELN-LIMS: an open-source database for academic laboratories

    PubMed Central

    Barillari, Caterina; Ottoz, Diana S. M.; Fuentes-Serna, Juan Mariano; Ramakrishnan, Chandrasekhar; Rinn, Bernd; Rudolf, Fabian

    2016-01-01

    Summary: The open-source platform openBIS (open Biology Information System) offers an Electronic Laboratory Notebook and a Laboratory Information Management System (ELN-LIMS) solution suitable for the academic life science laboratories. openBIS ELN-LIMS allows researchers to efficiently document their work, to describe materials and methods and to collect raw and analyzed data. The system comes with a user-friendly web interface where data can be added, edited, browsed and searched. Availability and implementation: The openBIS software, a user guide and a demo instance are available at https://openbis-eln-lims.ethz.ch. The demo instance contains some data from our laboratory as an example to demonstrate the possibilities of the ELN-LIMS (Ottoz et al., 2014). For rapid local testing, a VirtualBox image of the ELN-LIMS is also available. Contact: brinn@ethz.ch or fabian.rudolf@bsse.ethz.ch PMID:26508761

  6. openBIS ELN-LIMS: an open-source database for academic laboratories.

    PubMed

    Barillari, Caterina; Ottoz, Diana S M; Fuentes-Serna, Juan Mariano; Ramakrishnan, Chandrasekhar; Rinn, Bernd; Rudolf, Fabian

    2016-02-15

    The open-source platform openBIS (open Biology Information System) offers an Electronic Laboratory Notebook and a Laboratory Information Management System (ELN-LIMS) solution suitable for the academic life science laboratories. openBIS ELN-LIMS allows researchers to efficiently document their work, to describe materials and methods and to collect raw and analyzed data. The system comes with a user-friendly web interface where data can be added, edited, browsed and searched. The openBIS software, a user guide and a demo instance are available at https://openbis-eln-lims.ethz.ch. The demo instance contains some data from our laboratory as an example to demonstrate the possibilities of the ELN-LIMS (Ottoz et al., 2014). For rapid local testing, a VirtualBox image of the ELN-LIMS is also available. © The Author 2015. Published by Oxford University Press.

  7. OPEN RADIATION: a collaborative project for radioactivity measurement in the environment by the public

    NASA Astrophysics Data System (ADS)

    Bottollier-Depois, Jean-François; Allain, E.; Baumont, G.; Berthelot, N.; Clairand, I.; Couvez, C.; Darley, G.; Henry, B.; Jolivet, T.; Laroche, P.; Lebau-Livé, A.; Lejeune, V.; Miss, J.; Monange, W.; Quéinnec, F.; Richet, Y.; Simon, C.; Trompier, F.; Vayron, F.

    2017-09-01

    After the Fukushima accident, initiatives emerged from the public to carry out themselves measurements of the radioactivity in the environment with various devices, among which smartphones, and to share data and experiences through collaborative tools and social networks. Such measurements have two major interests, on the one hand, to enable each individual of the public to assess his own risk regarding the radioactivity and, on the other hand, to provide "real time" data from the field at various locations, especially in the early phase of an emergency situation, which could be very useful for the emergency management. The objective of the OPENRADIATION project is to offer to the public the opportunity to be an actor for measurements of the radioactivity in the environment using connected dosimetric applications on smartphones. The challenge is to operate such a system on a sustainable basis in peaceful time and be useful in case of emergency. In "peaceful situation", this project is based on a collaborative approach with the aim to get complementary data to the existing ones, to consolidate the radiation background, to generate alerts in case of problem and to provide education & training and enhanced pedagogical approaches for a clear understanding of measures for the public. In case of emergency situation, data will be available "spontaneously" from the field in "real time" providing an opportunity for the emergency management and the communication with the public. … The practical objective is i) to develop a website centralising data from various systems/dosimeters, providing dose maps with raw and filtered data and creating dedicated areas for specific initiatives and exchanges of data and ii) to develop a data acquisition protocol and a dosimetric application using a connected dosimeter with a bluetooth connection. This project is conducted within a partnership between organisms' representative of the scientific community and associations to create links

  8. Transforming High School Classrooms with Free/Open Source Software: "It's Time for an Open Source Software Revolution"

    ERIC Educational Resources Information Center

    Pfaffman, Jay

    2008-01-01

    Free/Open Source Software (FOSS) applications meet many of the software needs of high school science classrooms. In spite of the availability and quality of FOSS tools, they remain unknown to many teachers and utilized by fewer still. In a world where most software has restrictions on copying and use, FOSS is an anomaly, free to use and to…

  9. Transforming High School Classrooms with Free/Open Source Software: "It's Time for an Open Source Software Revolution"

    ERIC Educational Resources Information Center

    Pfaffman, Jay

    2008-01-01

    Free/Open Source Software (FOSS) applications meet many of the software needs of high school science classrooms. In spite of the availability and quality of FOSS tools, they remain unknown to many teachers and utilized by fewer still. In a world where most software has restrictions on copying and use, FOSS is an anomaly, free to use and to…

  10. How Open Source Can Still Save the World

    NASA Astrophysics Data System (ADS)

    Behlendorf, Brian

    Many of the worlds’ major problems - economic distress, natural disaster responses, broken health care systems, education crises, and more - are not fundamentally information technology issues. However, in every case mentioned and more, there exist opportunities for Open Source software to uniquely change the way we can address these problems. At times this is about addressing a need for which no sufficient commercial market exists. For others, it is in the way Open Source licenses free the recipient from obligations to the creators, creating a relationship of mutual empowerment rather than one of dependency. For yet others, it is in the way the open collaborative processes that form around Open Source software provide a neutral ground for otherwise competitive parties to find a greatest common set of mutual needs to address together rather than in parallel. Several examples of such software exist today and are gaining traction. Governments, NGOs, and businesses are beginning to recognize the potential and are organizing to meet it. How far can this be taken?

  11. Development of an Open-Source, Discrete Element Knee Model.

    PubMed

    Schmitz, Anne; Piovesan, Davide

    2016-10-01

    Biomechanical modeling is an important tool in that it can provide estimates of forces that cannot easily be measured (e.g., soft tissue loads). The goal of this study was to develop a discrete element model of the knee that is open source to allow for utilization of modeling by a wider audience of researchers. A six degree-of-freedom tibiofemoral and one degree-of-freedom patellofemoral joint were created in OpenSim. Eighteen ligament bundles and tibiofemoral contact were included in the model. During a passive flexion movement, maximum deviation of the model from the literature occurred at the most flexed angle with deviations of 2° adduction, 7° internal rotation, 1-mm posterior translation, 12-mm inferior translation, and 4-mm lateral translation. Similarly, the overall elongation of the ligaments agreed with literature values with strains of less than 13%. These results provide validation of the physiological relevance of the model. This model is one of the few open source, discrete element knee models to date, and has many potential applications, one being for use in an open-source cosimulation framework.

  12. Patient Access to Their Health Record Using Open Source EHR.

    PubMed

    Chelsom, John; Dogar, Naveed

    2015-01-01

    In both Europe and North America, patients are beginning to gain access to their health records in electronic form. Using the open source cityEHR as an example, we have focussed on the needs of clinical users to gather requirements for patient access and have implemented these requirements in a new application called cityEHR-PA. The development of a separate application for patient access was necessary to address requirements for security and ease of use. The use of open standards throughout the design of the EHR allows the possibility of third parties to develop applications for patient access, consuming the individual patient record extracted from the full EHR.

  13. Small-angle Compton Scattering to Determine the Depth of a Radioactive Source in Matter

    SciTech Connect

    Oberer, R. B.; Gunn, C. A.; Chiang, L. G.; Valiga, R. E.; Cantrell, J. A.

    2011-04-01

    A gamma-ray peak in a spectrum is often accompanied by a discontinuity in the Compton continuum at the peak. The Compton continuum results from Compton scattering in the detector. The discontinuity at a peak results from small-angle Compton scattering by the gamma rays in matter situated directly between the gamma-ray source and the detector. The magnitude of this discontinuity with respect to the gamma-ray peak is therefore an indicator of the amount of material or shielding between the gamma-ray source and the detector. This small-angle scattering was used to determine the depth of highly-enriched uranium (HEU) solution standards in a concrete floor mockup. The empirical results of the use of this small-angle scattering discontinuity in a concrete floor experiment will be described. A Monte Carlo calculation of the experiment will also be described. In addition, the depth determined from small-angle scattering was used in conjunction with differential attenuation to more accurately measure the uranium content of the mockup. Following these empirical results, the theory of small-angle scattering will be discussed. The magnitude of the discontinuity compared to the peak count rate is directly related to the depth of the gamma-ray source in matter. This relation can be described by relatively simple mathematical expressions. This is the first instance that we are aware of in which the small-angle Compton scattering has been used to determine the depth of a radioactive source. Furthermore this is the first development of the theoretical expressions for the magnitude of the small-angle scattering discontinuity.

  14. The ALPS Project: Open Source Software for Quantum Lattice Models

    NASA Astrophysics Data System (ADS)

    Trebst, Simon

    2004-03-01

    Algorithms for the simulation of strongly correlated quantum lattice models have matured and there is increasing demand for reliable simulation results both from theoreticians to test ideas and from experimental researchers as means of data analysis. Unlike in other fields there have been no "community codes" available, with the computational experts writing individual codes, adjusting them for specific needs of new projects and thereby investing weeks to months in software development for each project. We will present experiences with the ALPS collaboration, an open source effort aiming at simplifying the development of simulation codes for strongly correlated classical and quantum lattice models. It provides powerful but generic libraries and open-source application programs (such as classical and quantum Monte Carlo, exact diagonalization, DMRG, and others), intended also for non-experts. We will especially address three topics that are of relevance also to other similar efforts: license issues have been extensively discussed, especially concerning the scientific return of making source codes available to the community. The ALPS license is a compromise ensuring scientific return by requesting citations to the original authors of the codes while making sources openly available for future developments. The coordination of an international collaboration with researchers contributing from Austria, France, Germany, Japan and Switzerland by intense developer workshops on a semi-annual basis and annual user workshops is discussed. The situation for funding needed for such a joint open source development effort, which is often classified more as an infrastructure project and less as a research project, is also addressed. Work done with the ALPS collaboration initiated by M. Troyer (ETH) and S. Todo (Tokyo). For details and a list of members see http://alps.comp-phys.org/

  15. Harvesting, Integrating and Distributing Large Open Geospatial Datasets Using Free and Open-Source Software

    NASA Astrophysics Data System (ADS)

    Oliveira, Ricardo; Moreno, Rafael

    2016-06-01

    Federal, State and Local government agencies in the USA are investing heavily on the dissemination of Open Data sets produced by each of them. The main driver behind this thrust is to increase agencies' transparency and accountability, as well as to improve citizens' awareness. However, not all Open Data sets are easy to access and integrate with other Open Data sets available even from the same agency. The City and County of Denver Open Data Portal distributes several types of geospatial datasets, one of them is the city parcels information containing 224,256 records. Although this data layer contains many pieces of information it is incomplete for some custom purposes. Open-Source Software were used to first collect data from diverse City of Denver Open Data sets, then upload them to a repository in the Cloud where they were processed using a PostgreSQL installation on the Cloud and Python scripts. Our method was able to extract non-spatial information from a `not-ready-to-download' source that could then be combined with the initial data set to enhance its potential use.

  16. A Dozen Years after Open Source's 1998 Birth, It's Time for "OpenTechComm"

    ERIC Educational Resources Information Center

    Still, Brian

    2010-01-01

    2008 marked the 10-year Anniversary of the Open Source movement, which has had a substantial impact on not only software production and adoption, but also on the sharing and distribution of information. Technical communication as a discipline has taken some advantage of the movement or its derivative software, but this article argues not as much…

  17. OpenMDC: an open-source framework for medical device communication.

    PubMed

    Vawdrey, David K; Hum, R Stanley

    2008-11-06

    We have developed an extensible, open source framework for collecting data from bedside medical devices which support RS-232 serial output. The system uses inexpensive hardware to convert RS-232 signals to Universal Serial Bus (USB) format, enabling "plug-and-play" device communication at low cost. A prototype of the system has been created and tested with Puritan-Bennett 840 ventilators.

  18. Opening Up to Open Source: Looking at How Moodle Was Adopted in Higher Education

    ERIC Educational Resources Information Center

    Costello, Eamon

    2013-01-01

    The virtual learning environment (VLE) has grown to become a piece of complex infrastructure that is now deemed critical to higher educational provision. This paper looks at Moodle and its adoption in higher education. Moodle's origins, as an open source VLE, are investigated and its growth examined in the context of how higher educational…

  19. A Dozen Years after Open Source's 1998 Birth, It's Time for "OpenTechComm"

    ERIC Educational Resources Information Center

    Still, Brian

    2010-01-01

    2008 marked the 10-year Anniversary of the Open Source movement, which has had a substantial impact on not only software production and adoption, but also on the sharing and distribution of information. Technical communication as a discipline has taken some advantage of the movement or its derivative software, but this article argues not as much…

  20. Opening Up to Open Source: Looking at How Moodle Was Adopted in Higher Education

    ERIC Educational Resources Information Center

    Costello, Eamon

    2013-01-01

    The virtual learning environment (VLE) has grown to become a piece of complex infrastructure that is now deemed critical to higher educational provision. This paper looks at Moodle and its adoption in higher education. Moodle's origins, as an open source VLE, are investigated and its growth examined in the context of how higher educational…

  1. Going open source: some lessons learned from the development of OpenRecLink.

    PubMed

    Camargo Jr, Kenneth Rochel de; Coeli, Claudia Medina

    2015-02-01

    Record linkage is the process of identifying and merging records across different databases belonging to the same entity. The health sector is one of the pioneering areas of record linkage techniques applications. In 1998 we began the development of a software package, called RecLink that implemented probabilistic record linkage techniques. In this article we report the development of a new, open-source version of that program, now named OpenRecLink. The aim of this article is to present the main characteristics of the new version and some of the lessons learned during its development. The new version is a total rewrite of the program, based on three goals: (1) to migrate to a free and open source software (FOSS) platform; (2) to implement a multiplatform version; (3) to implement the support for internationalization. We describe the tools that we adopted, the process of development and some of the problems encountered.

  2. Neutrino Interactions with Matter by a New Neutrino Source From the Isotope Radioactive Decay Produced by the Proton Accelerator

    NASA Astrophysics Data System (ADS)

    Shin, Jae Won; Park, Tae-Sun; Kajino, Toshitaka; Cheoun, Myung-Ki

    A new neutrino source for future's neutrino experiments is suggested in this work. Unstable isotope, 27Si, can be produced when 27Al target is bombarded by 15 MeV proton beams. Through the decay of the 27Si, a new electron-neutrino source in the 0-5.0 MeV energy range is obtained. Production of the neutrino source is studied by using GEANT4 code with JENDL-4.0/HE. For radioactive decay processes, we use "G4RadioactiveDecay" model based on the Evaluated Nuclear Structure Data File (ENSDF). As for the detection system of the new neutrino source, we evaluate reaction or event rates for available radiochemical detectors and LENA type scintillator detector.

  3. An Open-Source and Java-Technologies Approach to Web Applications

    DTIC Science & Technology

    2003-09-01

    currently being replaced by open-source. This thesis explores using open-source and Java technologies to implement Web applications. A prototype of the...currently being replaced by open-source. This thesis explores using open-source and Java technologies to implement Web applications. A prototype of the

  4. Superconducting open-gradient magnetic separation for the pretreatment of radioactive or mixed waste vitrification feeds. 1997 annual progress report

    SciTech Connect

    Doctor, R.; Nunez, L.; Cicero-Herman, C.A.; Ritter, J.A.; Landsberger, S.

    1997-01-01

    'Vitrification has been selected as a final waste form technology in the US for long-term storage of high-level radioactive wastes (HLW). However, a foreseeable problem during vitrification in some waste feed streams lies in the presence of elements (e.g., transition metals) in the HLW that may cause instabilities in the final glass product. The formation of spinel compounds, such as Fe{sub 3}O{sub 4} and FeCrO{sub 4}, results in glass phase separation and reduces vitrifier lifetime, and durability of the final waste form. A superconducting open gradient magnetic separation (OGMS) system maybe suitable for the removal of the deleterious transition elements (e.g. Fe, Co, and Ni) and other elements (lanthanides) from vitrification feed streams due to their ferromagnetic or paramagnetic nature. The OGMS systems are designed to deflect and collect paramagnetic minerals as they interact with a magnetic field gradient. This system has the potential to reduce the volume of HLW for vitrification and ensure a stable product. In order to design efficient OGMS and High gradient magnetic separation (HGMS) processes, a fundamental understanding of the physical and chemical properties of the waste feed streams is required. Using HLW simulant and radioactive fly ash and sludge samples from the Savannah River Technology Center, Rocky Flats site, and the Hanford reservation, several techniques were used to characterize and predict the separation capability for a superconducting OGMS system.'

  5. BioJava: an open-source framework for bioinformatics.

    PubMed

    Holland, R C G; Down, T A; Pocock, M; Prlić, A; Huen, D; James, K; Foisy, S; Dräger, A; Yates, A; Heuer, M; Schreiber, M J

    2008-09-15

    BioJava is a mature open-source project that provides a framework for processing of biological data. BioJava contains powerful analysis and statistical routines, tools for parsing common file formats and packages for manipulating sequences and 3D structures. It enables rapid bioinformatics application development in the Java programming language. BioJava is an open-source project distributed under the Lesser GPL (LGPL). BioJava can be downloaded from the BioJava website (http://www.biojava.org). BioJava requires Java 1.5 or higher. All queries should be directed to the BioJava mailing lists. Details are available at http://biojava.org/wiki/BioJava:MailingLists.

  6. Comparison of open-source visual analytics toolkits

    NASA Astrophysics Data System (ADS)

    Harger, John R.; Crossno, Patricia J.

    2012-01-01

    We present the results of the first stage of a two-stage evaluation of open source visual analytics packages. This stage is a broad feature comparison over a range of open source toolkits. Although we had originally intended to restrict ourselves to comparing visual analytics toolkits, we quickly found that very few were available. So we expanded our study to include information visualization, graph analysis, and statistical packages. We examine three aspects of each toolkit: visualization functions, analysis capabilities, and development environments. With respect to development environments, we look at platforms, language bindings, multi-threading/parallelism, user interface frameworks, ease of installation, documentation, and whether the package is still being actively developed.

  7. Modular Open-Source Software for Item Factor Analysis.

    PubMed

    Pritikin, Joshua N; Hunter, Micheal D; Boker, Steven

    2015-06-01

    This paper introduces an Item Factor Analysis (IFA) module for OpenMx, a free, open-source, and modular statistical modeling package that runs within the R programming environment on GNU/Linux, Mac OS X, and Microsoft Windows. The IFA module offers a novel model specification language that is well suited to programmatic generation and manipulation of models. Modular organization of the source code facilitates the easy addition of item models, item parameter estimation algorithms, optimizers, test scoring algorithms, and fit diagnostics all within an integrated framework. Three short example scripts are presented for fitting item parameters, latent distribution parameters, and a multiple group model. The availability of both IFA and structural equation modeling in the same software is a step toward the unification of these two methodologies.

  8. Modular Open-Source Software for Item Factor Analysis

    PubMed Central

    Pritikin, Joshua N.; Hunter, Micheal D.; Boker, Steven

    2015-01-01

    This paper introduces an Item Factor Analysis (IFA) module for OpenMx, a free, open-source, and modular statistical modeling package that runs within the R programming environment on GNU/Linux, Mac OS X, and Microsoft Windows. The IFA module offers a novel model specification language that is well suited to programmatic generation and manipulation of models. Modular organization of the source code facilitates the easy addition of item models, item parameter estimation algorithms, optimizers, test scoring algorithms, and fit diagnostics all within an integrated framework. Three short example scripts are presented for fitting item parameters, latent distribution parameters, and a multiple group model. The availability of both IFA and structural equation modeling in the same software is a step toward the unification of these two methodologies. PMID:27065479

  9. Source term evaluation model for high-level radioactive waste repository with decay chain build-up.

    PubMed

    Chopra, Manish; Sunny, Faby; Oza, R B

    2016-09-18

    A source term model based on two-component leach flux concept is developed for a high-level radioactive waste repository. The long-lived radionuclides associated with high-level waste may give rise to the build-up of activity because of radioactive decay chains. The ingrowths of progeny are incorporated in the model using Bateman decay chain build-up equations. The model is applied to different radionuclides present in the high-level radioactive waste, which form a part of decay chains (4n to 4n + 3 series), and the activity of the parent and daughter radionuclides leaching out of the waste matrix is estimated. Two cases are considered: one when only parent is present initially in the waste and another where daughters are also initially present in the waste matrix. The incorporation of in situ production of daughter radionuclides in the source is important to carry out realistic estimates. It is shown that the inclusion of decay chain build-up is essential to avoid underestimation of the radiological impact assessment of the repository. The model can be a useful tool for evaluating the source term of the radionuclide transport models used for the radiological impact assessment of high-level radioactive waste repositories.

  10. Open and Crowd-Sourced Data for Treaty Verification

    DTIC Science & Technology

    2014-10-01

    if one wants to go beyond this and ask citizens 35 to consciously gather information and report on the activities of their own governments. This...and processing of open source information. Incentivizing issues arise if one wants to go beyond this and ask citizens to consciously gather information...photoacoustic chemical sensor using a quantum cascade laser,” Sensors Journal, IEEE, vol. 10, no. 3, pp. 572–577, 2010. [15] G. V. Ionov, “The

  11. GISCube, an Open Source Web-based GIS Application

    NASA Astrophysics Data System (ADS)

    Boustani, M.; Mattmann, C. A.; Ramirez, P.

    2014-12-01

    There are many Earth science projects and data systems being developed at the Jet Propulsion Laboratory, California Institute of Technology (JPL) that require the use of Geographic Information Systems (GIS). Three in particular are: (1) the JPL Airborne Snow Observatory (ASO) that measures the amount of water being generated from snow melt in mountains; (2) the Regional Climate Model Evaluation System (RCMES) that compares climate model outputs with remote sensing datasets in the context of model evaluation and the Intergovernmental Panel on Climate Change and for the U.S. National Climate Assessment and; (3) the JPL Snow Server that produces a snow and ice climatology for the Western US and Alaska, for the U.S. National Climate Assessment. Each of these three examples and all other earth science projects are strongly in need of having GIS and geoprocessing capabilities to process, visualize, manage and store GeoSpatial data. Beside some open source GIS libraries and some software like ArcGIS there are comparatively few open source, web-based and easy to use application that are capable of doing GIS processing and visualization. To address this, we present GISCube, an open source web-based GIS application that can store, visualize and process GIS and GeoSpatial data. GISCube is powered by Geothon, an open source python GIS cookbook. Geothon has a variety of Geoprocessing tools such data conversion, processing, spatial analysis and data management tools. GISCube has the capability of supporting a variety of well known GIS data formats in both vector and raster formats, and the system is being expanded to support NASA's and scientific data formats such as netCDF and HDF files. In this talk, we demonstrate how Earth science and other projects can benefit by using GISCube and Geothon, its current goals and our future work in the area.

  12. Open Source Software For Patient Data Management In Critical Care.

    PubMed

    Massaut, Jacques; Charretk, Nicolas; Gayraud, Olivia; Van Den Bergh, Rafael; Charles, Adelin; Edema, Nathalie

    2015-01-01

    We have previously developed a Patient Data Management System for Intensive Care based on Open Source Software. The aim of this work was to adapt this software to use in Emergency Departments in low resource environments. The new software includes facilities for utilization of the South African Triage Scale and prediction of mortality based on independent predictive factors derived from data from the Tabarre Emergency Trauma Center in Port au Prince, Haiti.

  13. Open source tools for large-scale neuroscience.

    PubMed

    Freeman, Jeremy

    2015-06-01

    New technologies for monitoring and manipulating the nervous system promise exciting biology but pose challenges for analysis and computation. Solutions can be found in the form of modern approaches to distributed computing, machine learning, and interactive visualization. But embracing these new technologies will require a cultural shift: away from independent efforts and proprietary methods and toward an open source and collaborative neuroscience. Copyright © 2015 The Author. Published by Elsevier Ltd.. All rights reserved.

  14. DESIGN NOTE: SCOUT - Surface Characterization Open-Source Universal Toolbox

    NASA Astrophysics Data System (ADS)

    Sacerdotti, F.; Porrino, A.; Butler, C.; Brinkmann, S.; Vermeulen, M.

    2002-02-01

    Surface topography plays a significant role in functional performance situations like friction, lubrication and wear. A European Community funded research programme on areal characterization of steel sheet has recently assisted research in this area. This article is dedicated to the software that supported most of the programme. Born as a rudimentary collection of procedures, it grew steadily to become an integrated package, later equipped with a graphical interface and circulated to the research community employing the Open-Source philosophy.

  15. Open Source Intelligence - Doctrine’s Neglected Child

    DTIC Science & Technology

    2007-11-02

    1 Richard S . Friedman, “Open Source Intelligence,” Parameters (Summer 1998): 159; quoted in David Reed, “Aspiring to Spying...Richard S . Friedman, 162-163. 11 Wyn Bowen, 52. 12 Richard S . Friedman, 164; quoted in Ray Cline, “Introduction,” The Intelligence War (London...evacuation operations, counter-terrorist operations, foreign internal defense, peace operations, consequence management, and humanitarian assistance

  16. Cassandra: An open source Monte Carlo package for molecular simulation.

    PubMed

    Shah, Jindal K; Marin-Rimoldi, Eliseo; Mullen, Ryan Gotchy; Keene, Brian P; Khan, Sandip; Paluch, Andrew S; Rai, Neeraj; Romanielo, Lucienne L; Rosch, Thomas W; Yoo, Brian; Maginn, Edward J

    2017-07-15

    Cassandra is an open source atomistic Monte Carlo software package that is effective in simulating the thermodynamic properties of fluids and solids. The different features and algorithms used in Cassandra are described, along with implementation details and theoretical underpinnings to various methods used. Benchmark and example calculations are shown, and information on how users can obtain the package and contribute to it are provided. © 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

  17. Children's Ideas about Radioactivity and Radiation: sources, modes of travel, uses and dangers.

    ERIC Educational Resources Information Center

    Boyes, Edward; Stanisstreet, Martin

    1994-01-01

    The understanding concerning radioactivity and radiation of pupils ages 11-16 was studied using a closed-form questionnaire with a large cohort of children and interviews with subsets of this group. A majority of children demonstrated confusion about the environmental impacts of radioactivity and radiation. (LZ)

  18. Children's Ideas about Radioactivity and Radiation: sources, modes of travel, uses and dangers.

    ERIC Educational Resources Information Center

    Boyes, Edward; Stanisstreet, Martin

    1994-01-01

    The understanding concerning radioactivity and radiation of pupils ages 11-16 was studied using a closed-form questionnaire with a large cohort of children and interviews with subsets of this group. A majority of children demonstrated confusion about the environmental impacts of radioactivity and radiation. (LZ)

  19. Open-source, community-driven microfluidics with Metafluidics.

    PubMed

    Kong, David S; Thorsen, Todd A; Babb, Jonathan; Wick, Scott T; Gam, Jeremy J; Weiss, Ron; Carr, Peter A

    2017-06-07

    Microfluidic devices have the potential to automate and miniaturize biological experiments, but open-source sharing of device designs has lagged behind sharing of other resources such as software. Synthetic biologists have used microfluidics for DNA assembly, cell-free expression, and cell culture, but a combination of expense, device complexity, and reliance on custom set-ups hampers their widespread adoption. We present Metafluidics, an open-source, community-driven repository that hosts digital design files, assembly specifications, and open-source software to enable users to build, configure, and operate a microfluidic device. We use Metafluidics to share designs and fabrication instructions for both a microfluidic ring-mixer device and a 32-channel tabletop microfluidic controller. This device and controller are applied to build genetic circuits using standard DNA assembly methods including ligation, Gateway, Gibson, and Golden Gate. Metafluidics is intended to enable a broad community of engineers, DIY enthusiasts, and other nontraditional participants with limited fabrication skills to contribute to microfluidic research.

  20. Open-Source Automated Mapping Four-Point Probe

    PubMed Central

    Chandra, Handy; Allen, Spencer W.; Oberloier, Shane W.; Bihari, Nupur; Gwamuri, Jephias; Pearce, Joshua M.

    2017-01-01

    Scientists have begun using self-replicating rapid prototyper (RepRap) 3-D printers to manufacture open source digital designs of scientific equipment. This approach is refined here to develop a novel instrument capable of performing automated large-area four-point probe measurements. The designs for conversion of a RepRap 3-D printer to a 2-D open source four-point probe (OS4PP) measurement device are detailed for the mechanical and electrical systems. Free and open source software and firmware are developed to operate the tool. The OS4PP was validated against a wide range of discrete resistors and indium tin oxide (ITO) samples of different thicknesses both pre- and post-annealing. The OS4PP was then compared to two commercial proprietary systems. Results of resistors from 10 to 1 MΩ show errors of less than 1% for the OS4PP. The 3-D mapping of sheet resistance of ITO samples successfully demonstrated the automated capability to measure non-uniformities in large-area samples. The results indicate that all measured values are within the same order of magnitude when compared to two proprietary measurement systems. In conclusion, the OS4PP system, which costs less than 70% of manual proprietary systems, is comparable electrically while offering automated 100 micron positional accuracy for measuring sheet resistance over larger areas. PMID:28772471

  1. Free and open-source automated 3-D microscope.

    PubMed

    Wijnen, Bas; Petersen, Emily E; Hunt, Emily J; Pearce, Joshua M

    2016-11-01

    Open-source technology not only has facilitated the expansion of the greater research community, but by lowering costs it has encouraged innovation and customizable design. The field of automated microscopy has continued to be a challenge in accessibility due the expense and inflexible, noninterchangeable stages. This paper presents a low-cost, open-source microscope 3-D stage. A RepRap 3-D printer was converted to an optical microscope equipped with a customized, 3-D printed holder for a USB microscope. Precision measurements were determined to have an average error of 10 μm at the maximum speed and 27 μm at the minimum recorded speed. Accuracy tests yielded an error of 0.15%. The machine is a true 3-D stage and thus able to operate with USB microscopes or conventional desktop microscopes. It is larger than all commercial alternatives, and is thus capable of high-depth images over unprecedented areas and complex geometries. The repeatability is below 2-D microscope stages, but testing shows that it is adequate for the majority of scientific applications. The open-source microscope stage costs less than 3-9% of the closest proprietary commercial stages. This extreme affordability vastly improves accessibility for 3-D microscopy throughout the world. © 2016 The Authors Journal of Microscopy © 2016 Royal Microscopical Society.

  2. Open-Source Automated Mapping Four-Point Probe.

    PubMed

    Chandra, Handy; Allen, Spencer W; Oberloier, Shane W; Bihari, Nupur; Gwamuri, Jephias; Pearce, Joshua M

    2017-01-26

    Scientists have begun using self-replicating rapid prototyper (RepRap) 3-D printers to manufacture open source digital designs of scientific equipment. This approach is refined here to develop a novel instrument capable of performing automated large-area four-point probe measurements. The designs for conversion of a RepRap 3-D printer to a 2-D open source four-point probe (OS4PP) measurement device are detailed for the mechanical and electrical systems. Free and open source software and firmware are developed to operate the tool. The OS4PP was validated against a wide range of discrete resistors and indium tin oxide (ITO) samples of different thicknesses both pre- and post-annealing. The OS4PP was then compared to two commercial proprietary systems. Results of resistors from 10 to 1 MΩ show errors of less than 1% for the OS4PP. The 3-D mapping of sheet resistance of ITO samples successfully demonstrated the automated capability to measure non-uniformities in large-area samples. The results indicate that all measured values are within the same order of magnitude when compared to two proprietary measurement systems. In conclusion, the OS4PP system, which costs less than 70% of manual proprietary systems, is comparable electrically while offering automated 100 micron positional accuracy for measuring sheet resistance over larger areas.

  3. RADIOACTIVE WASTE MANAGEMENT IN THE USSR: A REVIEW OF UNCLASSIFIED SOURCES, 1963-1990

    SciTech Connect

    Bradley, D. J.; Schneider, K. J.

    1990-03-01

    year capacity as the first of several modules, was about 30% completed by July 1989. The completion of this plant was subsequently "indefinitely postponed." The initial reprocessing scheme at the Kyshtym site used sodium uranyl acetate precipitation from fuel dissolved in nitric acid solutions. The basic method~ ology now appears to be based on the conventional PUREX process. Dry reprocessing on a pilot or laboratory scale has been under way in Dimitrovgrad since 1984, and a larger unit is now being built, according to the French CEA. Perhaps significantly, much research is being done on partitioning high-level waste into element fractions. The Soviets appear to have the technology to remove radioactive noble gases released during reprocessing operations; however, there are no indications of its implementation. Millions of curies of liquid low- and intermediate-level wastes have been disposed of by well injection into underground areas where they were supposedly contained by watertight rock strata. Some gaseous wastes were also disposed of by well injection. This practice is not referred to in recent literature and thus may not be widely used today. Rather, it appears that these waste streams are now first treated to reduce volume, and then solidified using bitumen or concrete. These solidified liquid wastes from Soviet nuclear power reactor operations, along with solid wastes, are disposed of in shallow-land burial sites located at most large power reactor stations. In addition, 35 shallow-land burial sites have been alluded to by the Soviets for disposal of industrial, medical, and research low-level wastes as well as ionization sources. Research on tritium-bearing and other gaseous wastes is mentioned, as well as a waste minimization program aimed at reducing the volume of waste streams by 30%. The Soviets have announced that their high-level waste management plan is to 1) store liquid wastes for 3-5 years; 2) incorporate the waste into glass (at a final glass

  4. Handling of Highly Radioactive Radiation Sources in a Hot Cell Using a Mechanically Driven Cell Crane - 13452

    SciTech Connect

    Klute, Stefan; Huber, Wolfgang-Bruno

    2013-07-01

    In 2010, Siempelkamp Nukleartechnik GmbH was awarded the contract for design and erection of a Hot Cell for handling and storage of highly radioactive radiation sources. This Hot Cell is part of a new hot cell laboratory, constructed for the NHZ (Neues Handhabungszentrum = New Handling Center) of the Nuclear Engineering Seibersdorf GmbH (NES). All incurring radioactive materials from Austria are collected in the NHZ, where they are safely conditioned and stored temporarily until their final storage. The main tasks of the NES include, apart from the collection, conditioning and storage of radioactive waste, also the reprocessing and the decontamination of facilities and laboratories originating from 45 years of research and development at the Seibersdorf site as well as the operation of the Hot Cell Laboratory [1]. The new Hot Cell Laboratory inside the NHZ consists of the following room areas: - One hot cell, placed in the center, for remote controlled, radiation protected handling of radioactive materials, including an integrated floor storage for the long-term temporary storage of highly radioactive radiation sources; - An anteroom for the loading and unloading of the hot cell; - One control room for the remote controlling of the hot cell equipment; - One floor storage, placed laterally to the hot cell, for burial, interim storage and removal of fissionable radioactive material in leak-proof packed units in 100 l drums. The specific design activity of the hot cell of 1.85 Pbq relating to 1-Me-Radiator including the integrated floor storage influences realization and design of the components used in the cell significantly. (authors)

  5. Effects of source rocks, soil features and climate on natural gamma radioactivity in the Crati valley (Calabria, Southern Italy).

    PubMed

    Guagliardi, Ilaria; Rovella, Natalia; Apollaro, Carmine; Bloise, Andrea; De Rosa, Rosanna; Scarciglia, Fabio; Buttafuoco, Gabriele

    2016-05-01

    The study, which represents an innovative scientific strategy to approach the study of natural radioactivity in terms of spatial and temporal variability, was aimed to characterize the background levels of natural radionuclides in soil and rock in the urban and peri-urban soil of a southern Italy area; to quantify their variations due to radionuclide bearing minerals and soil properties, taking into account nature and extent of seasonality influence. Its main novelty is taking into account the effect of climate in controlling natural gamma radioactivity as well as analysing soil radioactivity in terms of soil properties and pedogenetic processes. In different bedrocks and soils, activities of natural radionuclides ((238)U, (232)Th (4) K) and total radioactivity were measured at 181 locations by means of scintillation γ-ray spectrometry. In addition, selected rocks samples were collected and analysed, using a Scanning Electron Microscope (SEM) equipped with an Energy Dispersive Spectrometer (EDS) and an X-Ray Powder Diffraction (XRPD), to assess the main sources of radionuclides. The natural-gamma background is intimately related to differing petrologic features of crystalline source rocks and to peculiar pedogenetic features and processes. The radioactivity survey was conducted during two different seasons with marked changes in the main climatic characteristics, namely dry summer and moist winter, to evaluate possible effects of seasonal climatic variations and soil properties on radioactivity measurements. Seasonal variations of radionuclides activities show their peak values in summer. The activities of (238)U, (232)Th and (4) K exhibit a positive correlation with the air temperature and are negatively correlated with precipitations.

  6. OpenDrift - an open source framework for ocean trajectory modeling

    NASA Astrophysics Data System (ADS)

    Dagestad, Knut-Frode; Breivik, Øyvind; Ådlandsvik, Bjørn

    2016-04-01

    We will present a new, open source tool for modeling the trajectories and fate of particles or substances (Lagrangian Elements) drifting in the ocean, or even in the atmosphere. The software is named OpenDrift, and has been developed at Norwegian Meteorological Institute in cooperation with Institute of Marine Research. OpenDrift is a generic framework written in Python, and is openly available at https://github.com/knutfrode/opendrift/. The framework is modular with respect to three aspects: (1) obtaining input data, (2) the transport/morphological processes, and (3) exporting of results to file. Modularity is achieved through well defined interfaces between components, and use of a consistent vocabulary (CF conventions) for naming of variables. Modular input implies that it is not necessary to preprocess input data (e.g. currents, wind and waves from Eulerian models) to a particular file format. Instead "reader modules" can be written/used to obtain data directly from any original source, including files or through web based protocols (e.g. OPeNDAP/Thredds). Modularity of processes implies that a model developer may focus on the geophysical processes relevant for the application of interest, without needing to consider technical tasks such as reading, reprojecting, and colocating input data, rotation and scaling of vectors and model output. We will show a few example applications of using OpenDrift for predicting drifters, oil spills, and search and rescue objects.

  7. OpenStreams: Open Source Components as Building Blocks for Integrated Hydrological Models

    NASA Astrophysics Data System (ADS)

    Schellekens, J.; Becker, B. P. J.; Donchyts, G.; Goorden, N.; Hoogewoud, J. C.; Patzke, S.; Schwanenberg, D.

    2012-04-01

    Currently, Deltares is in the process of bringing out open source versions of most of its hydrology and hydrodynamics software. At the same time two packages are being developed as open source products from the start: OpenStreams aims to be a collection of (distributed) hydrological models and model components in which RTC-Tools targets at the implementation of various real-time control techniques. The aim is to come to a set of components that can work independently (e.g. through a command line interface) but can also be linked together through industry standards (such OpenMI) and more closely linked interfaces if needed. The system combines hydrological software written in different languages (Python with PCRaster extensions, C++, Fortran) and links these together using a C# layer that implements OpenMI. To do so all models and components first export their key functionality through an API in their native language around which the C# layers is wrapped using SWIG. The software presented here will be made available through http://oss.deltares.nl. Here we present a first test case in which a distributed hydrological model for the Rhine basin is linked to an RTC-Tools component for a major reservoir and to a groundwater model (MODFLOW) for the whole basin.

  8. Natural product-likeness score revisited: an open-source, open-data implementation.

    PubMed

    Jayaseelan, Kalai Vanii; Moreno, Pablo; Truszkowski, Andreas; Ertl, Peter; Steinbeck, Christoph

    2012-05-20

    Natural product-likeness of a molecule, i.e. similarity of this molecule to the structure space covered by natural products, is a useful criterion in screening compound libraries and in designing new lead compounds. A closed source implementation of a natural product-likeness score, that finds its application in virtual screening, library design and compound selection, has been previously reported by one of us. In this note, we report an open-source and open-data re-implementation of this scoring system, illustrate its efficiency in ranking small molecules for natural product likeness and discuss its potential applications. The Natural-Product-Likeness scoring system is implemented as Taverna 2.2 workflows, and is available under Creative Commons Attribution-Share Alike 3.0 Unported License at http://www.myexperiment.org/packs/183.html. It is also available for download as executable standalone java package from http://sourceforge.net/projects/np-likeness/under Academic Free License. Our open-source, open-data Natural-Product-Likeness scoring system can be used as a filter for metabolites in Computer Assisted Structure Elucidation or to select natural-product-like molecules from molecular libraries for the use as leads in drug discovery.

  9. Natural product-likeness score revisited: an open-source, open-data implementation

    PubMed Central

    2012-01-01

    Background Natural product-likeness of a molecule, i.e. similarity of this molecule to the structure space covered by natural products, is a useful criterion in screening compound libraries and in designing new lead compounds. A closed source implementation of a natural product-likeness score, that finds its application in virtual screening, library design and compound selection, has been previously reported by one of us. In this note, we report an open-source and open-data re-implementation of this scoring system, illustrate its efficiency in ranking small molecules for natural product likeness and discuss its potential applications. Results The Natural-Product-Likeness scoring system is implemented as Taverna 2.2 workflows, and is available under Creative Commons Attribution-Share Alike 3.0 Unported License at http://www.myexperiment.org/packs/183.html. It is also available for download as executable standalone java package from http://sourceforge.net/projects/np-likeness/under Academic Free License. Conclusions Our open-source, open-data Natural-Product-Likeness scoring system can be used as a filter for metabolites in Computer Assisted Structure Elucidation or to select natural-product-like molecules from molecular libraries for the use as leads in drug discovery. PMID:22607271

  10. Global threat reduction initiative efforts to address transportation challenges associated with the recovery of disused radioactive sealed sources - 10460

    SciTech Connect

    Whitworth, Julie; Abeyta, Cristy L; Griffin, Justin M; Matzke, James L; Pearson, Michael W; Cuthbertson, Abigail; Rawl, Richard; Singley, Paul

    2010-01-01

    Proper disposition of disused radioactive sources is essential for their safe and secure management and necessary to preclude their use in malicious activities. Without affordable, timely transportation options, disused sealed sources remain in storage at hundreds of sites throughout the country and around the world. While secure storage is a temporary measure, the longer sources remain disused or unwanted the chances increase that they will become unsecured or abandoned. The Global Threat Reduction Initiative's Off-Site Source Recovery Project (GTRIlOSRP), recovers thousands of disused and unwanted sealed sources annually as part of GTRl's larger mission to reduce and protect high risk nuclear and radiological materials located at civilian sites worldwide. Faced with decreasing availability of certified transportation containers to support movement of disused and unwanted neutron- and beta/gamma-emitting radioactive sealed sources, GTRIlOSRP has initiated actions to ensure the continued success of the project in timely recovery and management of sealed radioactive sources. Efforts described in this paper to enhance transportation capabilities include: {sm_bullet} Addition of authorized content to existing and planned Type B containers to support the movement of non-special form and other Type B-quantity sealed sources; {sm_bullet} Procurement of vendor services for the design, development, testing and certification of a new Type B container to support transportation of irradiators, teletherapy heads or sources removed from these devices using remote handling capabilities such as the IAEA portable hot cell facility; {sm_bullet} Expansion of shielded Type A container inventory for transportation of gamma-emitting sources in activity ranges requiring use of shielding for conformity with transportation requirements; {sm_bullet} Approval of the S300 Type A fissile container for transport of Pu-239 sealed sources internationally; {sm_bullet} Technology transfer of field

  11. A new chapter in environmental sensing: The Open-Source Published Environmental Sensing (OPENS) laboratory

    NASA Astrophysics Data System (ADS)

    Selker, J. S.; Roques, C.; Higgins, C. W.; Good, S. P.; Hut, R.; Selker, A.

    2015-12-01

    The confluence of 3-Dimensional printing, low-cost solid-state-sensors, low-cost, low-power digital controllers (e.g., Arduinos); and open-source publishing (e.g., Github) is poised to transform environmental sensing. The Open-Source Published Environmental Sensing (OPENS) laboratory has launched and is available for all to use. OPENS combines cutting edge technologies and makes them available to the global environmental sensing community. OPENS includes a Maker lab space where people may collaborate in person or virtually via on-line forum for the publication and discussion of environmental sensing technology (Corvallis, Oregon, USA, please feel free to request a free reservation for space and equipment use). The physical lab houses a test-bed for sensors, as well as a complete classical machine shop, 3-D printers, electronics development benches, and workstations for code development. OPENS will provide a web-based formal publishing framework wherein global students and scientists can peer-review publish (with DOI) novel and evolutionary advancements in environmental sensor systems. This curated and peer-reviewed digital collection will include complete sets of "printable" parts and operating computer code for sensing systems. The physical lab will include all of the machines required to produce these sensing systems. These tools can be addressed in person or virtually, creating a truly global venue for advancement in monitoring earth's environment and agricultural systems. In this talk we will present an example of the process of design and publication the design and data from the OPENS-Permeameter. The publication includes 3-D printing code, Arduino (or other control/logging platform) operational code; sample data sets, and a full discussion of the design set in the scientific context of previous related devices. Editors for the peer-review process are currently sought - contact John.Selker@Oregonstate.edu or Clement.Roques@Oregonstate.edu.

  12. Open3DALIGN: an open-source software aimed at unsupervised ligand alignment.

    PubMed

    Tosco, Paolo; Balle, Thomas; Shiri, Fereshteh

    2011-08-01

    An open-source, cross-platform software aimed at conformer generation and unsupervised rigid-body molecular alignment is presented. Different algorithms have been implemented to perform single and multi-conformation superimpositions on one or more templates. Alignments can be accomplished by matching pharmacophores, heavy atoms or a combination of the two. All methods have been successfully validated on eight comprehensive datasets previously gathered by Sutherland and co-workers. High computational performance has been attained through efficient parallelization of the code. The unsupervised nature of the alignment algorithms, together with its scriptable interface, make Open3DALIGN an ideal component of high-throughput, automated cheminformatics workflows.

  13. GiPSiNet: an open source/open architecture network middleware for surgical simulations.

    PubMed

    Liberatore, Vincenzo; Cavuşoğlu, M Cenk; Cai, Qingbo

    2006-01-01

    In this paper, we present the design and techniques of GiPSiNet, an open source/open architecture network middleware being developed for surgical simulations. GiPSiNet extends GiPSi (General Interactive Physical Simulation Interface), our framework for developing organ level surgical simulations, to network environments. This network extension is non-trivial, since the network settings pose several serious problems for distributed surgical virtual environments such as band-width limit, delays, and packet losses. Our goal is to enhance the quality (fidelity and realism) of networked simulations in the absence of network QoS (Quality of Service) through the GiPSiNet middleware.

  14. Search Analytics: Automated Learning, Analysis, and Search with Open Source

    NASA Astrophysics Data System (ADS)

    Hundman, K.; Mattmann, C. A.; Hyon, J.; Ramirez, P.

    2016-12-01

    The sheer volume of unstructured scientific data makes comprehensive human analysis impossible, resulting in missed opportunities to identify relationships, trends, gaps, and outliers. As the open source community continues to grow, tools like Apache Tika, Apache Solr, Stanford's DeepDive, and Data-Driven Documents (D3) can help address this challenge. With a focus on journal publications and conference abstracts often in the form of PDF and Microsoft Office documents, we've initiated an exploratory NASA Advanced Concepts project aiming to use the aforementioned open source text analytics tools to build a data-driven justification for the HyspIRI Decadal Survey mission. We call this capability Search Analytics, and it fuses and augments these open source tools to enable the automatic discovery and extraction of salient information. In the case of HyspIRI, a hyperspectral infrared imager mission, key findings resulted from the extractions and visualizations of relationships from thousands of unstructured scientific documents. The relationships include links between satellites (e.g. Landsat 8), domain-specific measurements (e.g. spectral coverage) and subjects (e.g. invasive species). Using the above open source tools, Search Analytics mined and characterized a corpus of information that would be infeasible for a human to process. More broadly, Search Analytics offers insights into various scientific and commercial applications enabled through missions and instrumentation with specific technical capabilities. For example, the following phrases were extracted in close proximity within a publication: "In this study, hyperspectral images…with high spatial resolution (1 m) were analyzed to detect cutleaf teasel in two areas. …Classification of cutleaf teasel reached a users accuracy of 82 to 84%." Without reading a single paper we can use Search Analytics to automatically identify that a 1 m spatial resolution provides a cutleaf teasel detection users accuracy of 82

  15. The Effect of Gamma-ray Detector Energy Resolution on the Ability to Identify Radioactive Sources

    SciTech Connect

    Nelson, K E; Gosnell, T B; Knapp, D A

    2009-03-05

    This report describes the results of an initial study on radiation detector spectral resolution, along with the underlying methodology used. The study was done as part of an ongoing effort in Detection Modeling and Operational Analysis (DMOA) for the DNDO System Architecture Directorate. The study objective was to assess the impact of energy resolution on radionuclide identification capability, measured by the ability to reliably discriminate between spectra associated with 'threats' (defined as fissile materials) and radioactive 'non-threats' that might be present in the normal stream of commerce. Although numerous factors must be considered in deciding which detector technology is appropriate for a specific application, spectral resolution is a critical one for homeland security applications in which a broad range of non-threat sources are present and very low false-alarm rates are required. In this study, we have proposed a metric for quantifying discrimination capability, and have shown how this metric depends on resolution. In future work we will consider other important factors, such as efficiency and volume, and the relative frequency of spectra known to be discrimination challenges in practical applications.

  16. Source team evaluation for radioactive low-level waste disposal performance assessment

    SciTech Connect

    Cowgill, M.G.; Sullivan, T.M.

    1993-01-01

    Information compiled on the low-level radioactive waste disposed at the three currently operating commercial disposal sites during the period 1987--1989 have been reviewed and processed in order to determine the total activity distribution in terms of waste stream, waste classification and waste form. The review identified deficiencies in the information currently being recorded on shipping manifests and the development of a uniform manifest is recommended (the NRC is currently developing a rule to establish a uniform manifest). The data from waste disposed during 1989 at one of the sites (Richland, WA) were more detailed than the data available during other years and at other sites, and thus were amenable to a more in-depth treatment. This included determination of the distribution of activity for each radionuclide by waste form, and thus enabled these data to be evaluated in terms of the specific needs for improved modeling of releases from waste packages. From the results, preliminary lists have been prepared of the isotopes which might be the most significant from the aspect of the development of a source term model.

  17. The source of solar energy, ca. 1840-1910: From meteoric hypothesis to radioactive speculations

    NASA Astrophysics Data System (ADS)

    Kragh, Helge

    2016-12-01

    Why does the Sun shine? Today we know the answer to the question and we also know that earlier answers were quite wrong. The problem of the source of solar energy became an important part of physics and astronomy only with the emergence of the law of energy conservation in the 1840s. The first theory of solar heat based on the new law, due to J.R. Mayer, assumed the heat to be the result of meteors or asteroids falling into the Sun. A different and more successful version of gravitation-to-heat energy conversion was proposed by H. Helmholtz in 1854 and further developed by W. Thomson. For more than forty years the once so celebrated Helmholtz-Thomson contraction theory was accepted as the standard theory of solar heat despite its prediction of an age of the Sun of only 20 million years. In between the gradual demise of this theory and the radically different one based on nuclear processes there was a period in which radioactivity was considered a possible alternative to gravitational contraction. The essay discusses various pre-nuclear ideas of solar energy production, including the broader relevance of the question as it was conceived in the Victorian era.

  18. Aerostat-Lofted Instrument Platform and Sampling Method for Determination of Emissions from Open Area Sources

    EPA Science Inventory

    Sampling emissions from open area sources, particularly sources of open burning, is difficult due to fast dilution of emissions and safety concerns for personnel. Representative emission samples can be difficult to obtain with flaming and explosive sources since personnel safety ...

  19. Aerostat-Lofted Instrument Platform and Sampling Method for Determination of Emissions from Open Area Sources

    EPA Science Inventory

    Sampling emissions from open area sources, particularly sources of open burning, is difficult due to fast dilution of emissions and safety concerns for personnel. Representative emission samples can be difficult to obtain with flaming and explosive sources since personnel safety ...

  20. A heterogeneous open ocean source for glyoxal and iodine oxide

    NASA Astrophysics Data System (ADS)

    Volkamer, R.; Coburn, S.; Dix, B. K.; Lechner, M.; Sinreich, R.; Duhl, T.; Guenther, A. B.

    2010-12-01

    The climate relevance of biologically active ocean upwelling regions has primarily been studied in terms of the air-sea partitioning of long-lived greenhouse gases (e.g., CO2, CH4, N2O etc), and the release of the reactive gas DMS, which can form aerosols as a result of atmospheric transformations. Considerably less attention has been paid to open ocean sources of other reactive gases that, like DMS, can form aerosols. Such molecules are glyoxal (CHOCHO) and IO. Glyoxal is an indicator for oxidative hydrocarbon chemistry, and a building block for secondary organic aerosol (SOA). SOA modifies the hygroscopic properties of organic aerosols, and potentially also adds to the growth of small particles to sizes that can more easily activate to form cloud droplets. Iodine oxide (IO) can nucleate new particles, and/or adds to the growth of pre-existing particles. Due to the very high solubility of the glyoxal molecule, concentrations in excess of 100ppt over the open ocean like we found over the Pacific Ocean require an airborne source mechanism (Sinreich et al., 2010). We have investigated the source mechanism further during a ship campaign in 2009, as well as a first research flight aboard the NSF/NCAR GV research aircraft (HIAPER). Both campaigns give clues about the sources of both gases over the remote tropical Pacific Ocean, and reveal a surprising impact on the composition of the free troposphere.

  1. MicMac GIS application: free open source

    NASA Astrophysics Data System (ADS)

    Duarte, L.; Moutinho, O.; Teodoro, A.

    2016-10-01

    The use of Remotely Piloted Aerial System (RPAS) for remote sensing applications is becoming more frequent as the technologies on on-board cameras and the platform itself are becoming a serious contender to satellite and airplane imagery. MicMac is a photogrammetric tool for image matching that can be used in different contexts. It is an open source software and it can be used as a command line or with a graphic interface (for each command). The main objective of this work was the integration of MicMac with QGIS, which is also an open source software, in order to create a new open source tool applied to photogrammetry/remote sensing. Python language was used to develop the application. This tool would be very useful in the manipulation and 3D modelling of a set of images. The main objective was to create a toolbar in QGIS with the basic functionalities with intuitive graphic interfaces. The toolbar is composed by three buttons: produce the points cloud, create the Digital Elevation Model (DEM) and produce the orthophoto of the study area. The application was tested considering 35 photos, a subset of images acquired by a RPAS in the Aguda beach area, Porto, Portugal. They were used in order to create a 3D terrain model and from this model obtain an orthophoto and the corresponding DEM. The code is open and can be modified according to the user requirements. This integration would be very useful in photogrammetry and remote sensing community combined with GIS capabilities.

  2. Open source software engineering for geoscientific modeling applications

    NASA Astrophysics Data System (ADS)

    Bilke, L.; Rink, K.; Fischer, T.; Kolditz, O.

    2012-12-01

    OpenGeoSys (OGS) is a scientific open source project for numerical simulation of thermo-hydro-mechanical-chemical (THMC) processes in porous and fractured media. The OGS software development community is distributed all over the world and people with different backgrounds are contributing code to a complex software system. The following points have to be addressed for successful software development: - Platform independent code - A unified build system - A version control system - A collaborative project web site - Continuous builds and testing - Providing binaries and documentation for end users OGS should run on a PC as well as on a computing cluster regardless of the operating system. Therefore the code should not include any platform specific feature or library. Instead open source and platform independent libraries like Qt for the graphical user interface or VTK for visualization algorithms are used. A source code management and version control system is a definite requirement for distributed software development. For this purpose Git is used, which enables developers to work on separate versions (branches) of the software and to merge those versions at some point to the official one. The version control system is integrated into an information and collaboration website based on a wiki system. The wiki is used for collecting information such as tutorials, application examples and case studies. Discussions take place in the OGS mailing list. To improve code stability and to verify code correctness a continuous build and testing system, based on the Jenkins Continuous Integration Server, has been established. This server is connected to the version control system and does the following on every code change: - Compiles (builds) the code on every supported platform (Linux, Windows, MacOS) - Runs a comprehensive test suite of over 120 benchmarks and verifies the results Runs software development related metrics on the code (like compiler warnings, code complexity

  3. Poster — Thur Eve — 41: Considerations for Patients with Permanently Implant Radioactive Sources Requiring Unrelated Surgery

    SciTech Connect

    Basran, P. S; Beckham, WA; Baxter, P

    2014-08-15

    Permanent implant of sealed radioactive sources is an effective technique for treating cancer. Typically, the radioactive sources are implanted in and near the disease, depositing dose locally over several months. There may be instances where these patients must undergo unrelated surgical procedures when the radioactive material remains active enough to pose risks. This work explores these risks, discusses strategies to mitigate those risks, and describes a case study for a permanent I-125 prostate brachytherapy implant patient who developed colo-rectal cancer and required surgery 6 months after brachytherapy. The first consideration is identifying the risk from unwarranted radiation to the patient and staff before, during, and after the surgical procedure. The second is identifying the risk the surgical procedure may have on the efficacy of the brachytherapy implant. Finally, there are considerations for controlling for radioactive substances from a regulatory perspective. After these risks are defined, strategies to mitigate those risks are considered. These strategies may include applying the concepts of ALARA, the use of protective equipment and developing a best practice strategy with the operating room team. We summarize this experience with some guidelines: If the surgical procedure is near (ex: 5 cm) of the implant; and, the surgical intervention may dislodge radioisotopes enough to compromise treatment or introduces radiation safety risks; and, the radioisotope has not sufficiently decayed to background levels; and, the surgery cannot be postponed, then a detailed analysis of risk is advised.

  4. Nowcasting influenza outbreaks using open-source media report.

    SciTech Connect

    Ray, Jaideep; Brownstein, John S.

    2013-02-01

    We construct and verify a statistical method to nowcast influenza activity from a time-series of the frequency of reports concerning influenza related topics. Such reports are published electronically by both public health organizations as well as newspapers/media sources, and thus can be harvested easily via web crawlers. Since media reports are timely, whereas reports from public health organization are delayed by at least two weeks, using timely, open-source data to compensate for the lag in %E2%80%9Cofficial%E2%80%9D reports can be useful. We use morbidity data from networks of sentinel physicians (both the Center of Disease Control's ILINet and France's Sentinelles network) as the gold standard of influenza-like illness (ILI) activity. The time-series of media reports is obtained from HealthMap (http://healthmap.org). We find that the time-series of media reports shows some correlation ( 0.5) with ILI activity; further, this can be leveraged into an autoregressive moving average model with exogenous inputs (ARMAX model) to nowcast ILI activity. We find that the ARMAX models have more predictive skill compared to autoregressive (AR) models fitted to ILI data i.e., it is possible to exploit the information content in the open-source data. We also find that when the open-source data are non-informative, the ARMAX models reproduce the performance of AR models. The statistical models are tested on data from the 2009 swine-flu outbreak as well as the mild 2011-2012 influenza season in the U.S.A.

  5. A Kernel for Open Source Drug Discovery in Tropical Diseases

    PubMed Central

    Ortí, Leticia; Carbajo, Rodrigo J.; Pieper, Ursula; Eswar, Narayanan; Maurer, Stephen M.; Rai, Arti K.; Taylor, Ginger; Todd, Matthew H.; Pineda-Lucena, Antonio; Sali, Andrej; Marti-Renom, Marc A.

    2009-01-01

    Background Conventional patent-based drug development incentives work badly for the developing world, where commercial markets are usually small to non-existent. For this reason, the past decade has seen extensive experimentation with alternative R&D institutions ranging from private–public partnerships to development prizes. Despite extensive discussion, however, one of the most promising avenues—open source drug discovery—has remained elusive. We argue that the stumbling block has been the absence of a critical mass of preexisting work that volunteers can improve through a series of granular contributions. Historically, open source software collaborations have almost never succeeded without such “kernels”. Methodology/Principal Findings Here, we use a computational pipeline for: (i) comparative structure modeling of target proteins, (ii) predicting the localization of ligand binding sites on their surfaces, and (iii) assessing the similarity of the predicted ligands to known drugs. Our kernel currently contains 143 and 297 protein targets from ten pathogen genomes that are predicted to bind a known drug or a molecule similar to a known drug, respectively. The kernel provides a source of potential drug targets and drug candidates around which an online open source community can nucleate. Using NMR spectroscopy, we have experimentally tested our predictions for two of these targets, confirming one and invalidating the other. Conclusions/Significance The TDI kernel, which is being offered under the Creative Commons attribution share-alike license for free and unrestricted use, can be accessed on the World Wide Web at http://www.tropicaldisease.org. We hope that the kernel will facilitate collaborative efforts towards the discovery of new drugs against parasites that cause tropical diseases. PMID:19381286

  6. dugksFoam: An open source OpenFOAM solver for the Boltzmann model equation

    NASA Astrophysics Data System (ADS)

    Zhu, Lianhua; Chen, Songze; Guo, Zhaoli

    2017-04-01

    A deterministic Boltzmann model equation solver called dugksFoam has been developed in the framework of the open source CFD toolbox OpenFOAM. The solver adopts the discrete unified gas kinetic scheme (Guo et al., 2015) with the Shakhov collision model. It has been validated by simulating several test cases covering different flow regimes including the one dimensional shock tube problem, a two dimensional thermal induced flow and the three dimensional lid-driven cavity flow. The solver features a parallel computing ability based on the velocity space decomposition, which is different from the physical space decomposition based approach provided by the OpenFOAM framework. The two decomposition approaches have been compared in both two and three dimensional cases. The parallel performance improves significantly using the newly implemented approach. A speed up by two orders of magnitudes has been observed using 256 cores on a small cluster.

  7. Building an Open Source Framework for Integrated Catchment Modeling

    NASA Astrophysics Data System (ADS)

    Jagers, B.; Meijers, E.; Villars, M.

    2015-12-01

    In order to develop effective strategies and associated policies for environmental management, we need to understand the dynamics of the natural system as a whole and the human role therein. This understanding is gained by comparing our mental model of the world with observations from the field. However, to properly understand the system we should look at dynamics of water, sediments, water quality, and ecology throughout the whole system from catchment to coast both at the surface and in the subsurface. Numerical models are indispensable in helping us understand the interactions of the overall system, but we need to be able to update and adjust them to improve our understanding and test our hypotheses. To support researchers around the world with this challenging task we started a few years ago with the development of a new open source modeling environment DeltaShell that integrates distributed hydrological models with 1D, 2D, and 3D hydraulic models including generic components for the tracking of sediment, water quality, and ecological quantities throughout the hydrological cycle composed of the aforementioned components. The open source approach combined with a modular approach based on open standards, which allow for easy adjustment and expansion as demands and knowledge grow, provides an ideal starting point for addressing challenging integrated environmental questions.

  8. Hypersonic simulations using open-source CFD and DSMC solvers

    NASA Astrophysics Data System (ADS)

    Casseau, V.; Scanlon, T. J.; John, B.; Emerson, D. R.; Brown, R. E.

    2016-11-01

    Hypersonic hybrid hydrodynamic-molecular gas flow solvers are required to satisfy the two essential requirements of any high-speed reacting code, these being physical accuracy and computational efficiency. The James Weir Fluids Laboratory at the University of Strathclyde is currently developing an open-source hybrid code which will eventually reconcile the direct simulation Monte-Carlo method, making use of the OpenFOAM application called dsmcFoam, and the newly coded open-source two-temperature computational fluid dynamics solver named hy2Foam. In conjunction with employing the CVDV chemistry-vibration model in hy2Foam, novel use is made of the QK rates in a CFD solver. In this paper, further testing is performed, in particular with the CFD solver, to ensure its efficacy before considering more advanced test cases. The hy2Foam and dsmcFoam codes have shown to compare reasonably well, thus providing a useful basis for other codes to compare against.

  9. Understanding How the "Open" of Open Source Software (OSS) Will Improve Global Health Security.

    PubMed

    Hahn, Erin; Blazes, David; Lewis, Sheri

    2016-01-01

    Improving global health security will require bold action in all corners of the world, particularly in developing settings, where poverty often contributes to an increase in emerging infectious diseases. In order to mitigate the impact of emerging pandemic threats, enhanced disease surveillance is needed to improve early detection and rapid response to outbreaks. However, the technology to facilitate this surveillance is often unattainable because of high costs, software and hardware maintenance needs, limited technical competence among public health officials, and internet connectivity challenges experienced in the field. One potential solution is to leverage open source software, a concept that is unfortunately often misunderstood. This article describes the principles and characteristics of open source software and how it may be applied to solve global health security challenges.

  10. Open source system OpenVPN in a function of Virtual Private Network

    NASA Astrophysics Data System (ADS)

    Skendzic, A.; Kovacic, B.

    2017-05-01

    Using of Virtual Private Networks (VPN) can establish high security level in network communication. VPN technology enables high security networking using distributed or public network infrastructure. VPN uses different security and managing rules inside networks. It can be set up using different communication channels like Internet or separate ISP communication infrastructure. VPN private network makes security communication channel over public network between two endpoints (computers). OpenVPN is an open source software product under GNU General Public License (GPL) that can be used to establish VPN communication between two computers inside business local network over public communication infrastructure. It uses special security protocols and 256-bit Encryption and it is capable of traversing network address translators (NATs) and firewalls. It allows computers to authenticate each other using a pre-shared secret key, certificates or username and password. This work gives review of VPN technology with a special accent on OpenVPN. This paper will also give comparison and financial benefits of using open source VPN software in business environment.

  11. Real breakthrough in detection of radioactive sources by portal monitors with plastic detectors and New Advanced Source Identification Algorithm (ASIA-New)

    SciTech Connect

    Stavrov, Andrei; Yamamoto, Eugene

    2015-07-01

    Radiation Portal Monitors (RPM) with plastic detectors represent the main instruments used for primary border (customs) radiation control. RPM are widely used because they are simple, reliable, relatively inexpensive and have a high sensitivity. However, experience using the RPM in various countries has revealed the systems have some grave shortcomings. There is a dramatic decrease of the probability of detection of radioactive sources under high suppression of the natural gamma background (radiation control of heavy cargoes, containers and, especially, trains). NORM (Naturally Occurring Radioactive Material) existing in objects under control trigger the so-called 'nuisance alarms', requiring a secondary inspection for source verification. At a number of sites, the rate of such alarms is so high it significantly complicates the work of customs and border officers. This paper presents a brief description of new variant of algorithm ASIA-New (New Advanced Source Identification Algorithm), which was developed by the Rapiscan company. It also demonstrates results of different tests and the capability of a new system to overcome the shortcomings stated above. New electronics and ASIA-New enables RPM to detect radioactive sources under a high background suppression (tested at 15-30%) and to verify the detected NORM (KCl) and the artificial isotopes (Co- 57, Ba-133 and other). New variant of ASIA is based on physical principles, a phenomenological approach and analysis of some important parameter changes during the vehicle passage through the monitor control area. Thanks to this capability main advantage of new system is that this system can be easily installed into any RPM with plastic detectors. Taking into account that more than 4000 RPM has been installed worldwide their upgrading by ASIA-New may significantly increase probability of detection and verification of radioactive sources even masked by NORM. This algorithm was tested for 1,395 passages of different

  12. openPSTD: The open source pseudospectral time-domain method for acoustic propagation

    NASA Astrophysics Data System (ADS)

    Hornikx, Maarten; Krijnen, Thomas; van Harten, Louis

    2016-06-01

    An open source implementation of the Fourier pseudospectral time-domain (PSTD) method for computing the propagation of sound is presented, which is geared towards applications in the built environment. Being a wave-based method, PSTD captures phenomena like diffraction, but maintains efficiency in processing time and memory usage as it allows to spatially sample close to the Nyquist criterion, thus keeping both the required spatial and temporal resolution coarse. In the implementation it has been opted to model the physical geometry as a composition of rectangular two-dimensional subdomains, hence initially restricting the implementation to orthogonal and two-dimensional situations. The strategy of using subdomains divides the problem domain into local subsets, which enables the simulation software to be built according to Object-Oriented Programming best practices and allows room for further computational parallelization. The software is built using the open source components, Blender, Numpy and Python, and has been published under an open source license itself as well. For accelerating the software, an option has been included to accelerate the calculations by a partial implementation of the code on the Graphical Processing Unit (GPU), which increases the throughput by up to fifteen times. The details of the implementation are reported, as well as the accuracy of the code.

  13. An open source package for the IBA data format IDF

    NASA Astrophysics Data System (ADS)

    Barradas, N. P.

    2014-08-01

    Ion Beam Analysis (IBA) codes and laboratories implement various formats to store the spectral data and to describe the experimental conditions and simulation or fit parameters. These various data formats are isolated applications and generally incompatible - they are unable to "talk" to each other. The need for a universal IBA data format (IDF) has been recognised for many years to allow easy transfer of data and simulation parameters between codes, as well as between experimentalists and data analysts. A new standard data format, IDF, which is transparent, universal, and includes the most common features desired by both experimentalists who collect and archive data and by users who analyse the data was previously presented. However, its actual implementation has been left to each individual software developer, and the sheer size of the full IDF definition has prevented widespread implementation, with only a few codes using the IDF. Open source software was now developed to implement the IDF, and made available to the community in http://idf.schemas.itn.pt/ both as source code and as a DLL that every code and lab can use to, finally, make data of different origins "talk" to each other. We report the main features of the open source IDF package developed.

  14. Clarity: an open-source manager for laboratory automation.

    PubMed

    Delaney, Nigel F; Rojas Echenique, José I; Marx, Christopher J

    2013-04-01

    Software to manage automated laboratories, when interfaced with hardware instruments, gives users a way to specify experimental protocols and schedule activities to avoid hardware conflicts. In addition to these basics, modern laboratories need software that can run multiple different protocols in parallel and that can be easily extended to interface with a constantly growing diversity of techniques and instruments. We present Clarity, a laboratory automation manager that is hardware agnostic, portable, extensible, and open source. Clarity provides critical features including remote monitoring, robust error reporting by phone or email, and full state recovery in the event of a system crash. We discuss the basic organization of Clarity, demonstrate an example of its implementation for the automated analysis of bacterial growth, and describe how the program can be extended to manage new hardware. Clarity is mature, well documented, actively developed, written in C# for the Common Language Infrastructure, and is free and open-source software. These advantages set Clarity apart from currently available laboratory automation programs. The source code and documentation for Clarity is available at http://code.google.com/p/osla/.

  15. The Pixhawk Open-Source Computer Vision Framework for Mavs

    NASA Astrophysics Data System (ADS)

    Meier, L.; Tanskanen, P.; Fraundorfer, F.; Pollefeys, M.

    2011-09-01

    Unmanned aerial vehicles (UAV) and micro air vehicles (MAV) are already intensively used in geodetic applications. State of the art autonomous systems are however geared towards the application area in safe and obstacle-free altitudes greater than 30 meters. Applications at lower altitudes still require a human pilot. A new application field will be the reconstruction of structures and buildings, including the facades and roofs, with semi-autonomous MAVs. Ongoing research in the MAV robotics field is focusing on enabling this system class to operate at lower altitudes in proximity to nearby obstacles and humans. PIXHAWK is an open source and open hardware toolkit for this purpose. The quadrotor design is optimized for onboard computer vision and can connect up to four cameras to its onboard computer. The validity of the system design is shown with a fully autonomous capture flight along a building.

  16. Conceptual Architecture of Building Energy Management Open Source Software (BEMOSS)

    SciTech Connect

    Khamphanchai, Warodom; Saha, Avijit; Rathinavel, Kruthika; Kuzlu, Murat; Pipattanasomporn, Manisa; Rahman, Saifur; Akyol, Bora A.; Haack, Jereme N.

    2014-12-01

    The objective of this paper is to present a conceptual architecture of a Building Energy Management Open Source Software (BEMOSS) platform. The proposed BEMOSS platform is expected to improve sensing and control of equipment in small- and medium-sized buildings, reduce energy consumption and help implement demand response (DR). It aims to offer: scalability, robustness, plug and play, open protocol, interoperability, cost-effectiveness, as well as local and remote monitoring. In this paper, four essential layers of BEMOSS software architecture -- namely User Interface, Application and Data Management, Operating System and Framework, and Connectivity layers -- are presented. A laboratory test bed to demonstrate the functionality of BEMOSS located at the Advanced Research Institute of Virginia Tech is also briefly described.

  17. Spatial Information Processing: Standards-Based Open Source Visualization Technology

    NASA Astrophysics Data System (ADS)

    Hogan, P.

    2009-12-01

    . Spatial information intelligence is a global issue that will increasingly affect our ability to survive as a species. Collectively we must better appreciate the complex relationships that make life on Earth possible. Providing spatial information in its native context can accelerate our ability to process that information. To maximize this ability to process information, three basic elements are required: data delivery (server technology), data access (client technology), and data processing (information intelligence). NASA World Wind provides open source client and server technologies based on open standards. The possibilities for data processing and data sharing are enhanced by this inclusive infrastructure for geographic information. It is interesting that this open source and open standards approach, unfettered by proprietary constraints, simultaneously provides for entirely proprietary use of this same technology. 1. WHY WORLD WIND? NASA World Wind began as a single program with specific functionality, to deliver NASA content. But as the possibilities for virtual globe technology became more apparent, we found that while enabling a new class of information technology, we were also getting in the way. Researchers, developers and even users expressed their desire for World Wind functionality in ways that would service their specific needs. They want it in their web pages. They want to add their own features. They want to manage their own data. They told us that only with this kind of flexibility, could their objectives and the potential for this technology be truly realized. World Wind client technology is a set of development tools, a software development kit (SDK) that allows a software engineer to create applications requiring geographic visualization technology. 2. MODULAR COMPONENTRY Accelerated evolution of a technology requires that the essential elements of that technology be modular components such that each can advance independent of the other

  18. Radioactive waste management in the USSR: A review of unclassified sources. Volume 2

    SciTech Connect

    Bradley, D.J.

    1991-03-01

    The Soviet Union does not currently have an overall radioactive waste management program or national laws that define objectives, procedures, and standards, although such a law is being developed, according to the Soviets. Occupational health and safety does not appear to receive major attention as it does in Western nations. In addition, construction practices that would be considered marginal in Western facilities show up in Soviet nuclear power and waste management operations. The issues involved with radioactive waste management and environmental restoration are being investigated at several large Soviet institutes; however, there is little apparent interdisciplinary integration between them, or interaction with the USSR Academy of Sciences. It is expected that a consensus on technical solutions will be achieved, but it may be slow in coming, especially for final disposal of high-level radioactive wastes and environmental restoration of contaminated areas. Meanwhile, many treatment, solidification, and disposal options for radioactive waste management are being investigated by the Soviets.

  19. Radioactive waste management in the USSR: A review of unclassified sources

    SciTech Connect

    Bradley, D.J.

    1991-03-01

    The Soviet Union does not currently have an overall radioactive waste management program or national laws that define objectives, procedures, and standards, although such a law is being developed, according to the Soviets. Occupational health and safety does not appear to receive major attention as it does in Western nations. In addition, construction practices that would be considered marginal in Western facilities show up in Soviet nuclear power and waste management operations. The issues involved with radioactive waste management and environmental restoration are being investigated at several large Soviet institutes; however, there is little apparent interdisciplinary integration between them, or interaction with the USSR Academy of Sciences. It is expected that a consensus on technical solutions will be achieved, but it may be slow in coming, especially for final disposal of high-level radioactive wastes and environmental restoration of contaminated areas. Meanwhile, many treatment, solidification, and disposal options for radioactive waste management are being investigated by the Soviets.

  20. Solid-State Laser, Resonant Ionization Laser Ion Source (Rilis) and Laser Beam Transport at Radioactive Ion Beam Facilities

    NASA Astrophysics Data System (ADS)

    Lassen, J.; Bricault, P.; Dombsky, M.; Izdebski, F.; Lavoie, J. P.; Gillner, M.; Gottwald, T.; Hellbusch, F.; Teigelhöfer, A.; Voss, A.; Wendt, K. D. A.

    2009-03-01

    The inception of laser resonance ionization spectroscopy and its application as a resonant ionization laser ion source (RILIS) took place merely 20 years ago with pulsed dye lasers [1-5]. By now next generation radioactive ion beam (RIB) facilities are being planned or built. Understanding and considering the unique RILIS requirements in the layout of next generation RIB facilities will allow for cost-effective implementation of this versatile ion source. This discussion touches on laser beam transport and RILIS requirements not necessarily obvious to experts in conventional ion sources.

  1. OpenMS-Simulator: an open-source software for theoretical tandem mass spectrum prediction.

    PubMed

    Wang, Yaojun; Yang, Fei; Wu, Peng; Bu, Dongbo; Sun, Shiwei

    2015-04-02

    Tandem mass spectrometry (MS/MS) acts as a key technique for peptide identification. The MS/MS-based peptide identification approaches can be categorized into two families, namely, de novo and database search. Both of the two types of approaches can benefit from an accurate prediction of theoretical spectrum. A theoretical spectrum consists of m/z and intensity of possibly occurring ions, which are estimated via simulating the spectrum generating process. Extensive researches have been conducted for theoretical spectrum prediction; however, the prediction methods suffer from low prediciton accuracy due to oversimplifications in the spectrum simulation process. In the study, we present an open-source software package, called OpenMS-Simulator, to predict theoretical spectrum for a given peptide sequence. Based on the mobile-proton hypothesis for peptide fragmentation, OpenMS-Simulator trained a closed-form model for the intensity ratio of adjacent y ions, from which the whole theoretical spectrum can be constructed. On a collection of representative spectra datasets with annotated peptide sequences, experimental results suggest that OpenMS-Simulator can predict theoretical spectra with considerable accuracy. The study also presents an application of OpenMS-Simulator: the similarity between theoretical spectra and query spectra can be used to re-rank the peptide sequence reported by SEQUEST/X!Tandem. OpenMS-Simulator implements a novel model to predict theoretical spectrum for a given peptide sequence. Compared with existing theoretical spectrum prediction tools, say MassAnalyzer and MSSimulator, our method not only simplifies the computation process, but also improves the prediction accuracy. Currently, OpenMS-Simulator supports the prediction of CID and HCD spectrum for peptides with double charges. The extension to cover more fragmentation models and support multiple-charged peptides remains as one of the future works.

  2. Induced radioactivity of a GSO scintillator by secondary fragments in carbon ion therapy and its effects on in-beam OpenPET imaging

    NASA Astrophysics Data System (ADS)

    Hirano, Yoshiyuki; Nitta, Munetaka; Nishikido, Fumihiko; Yoshida, Eiji; Inadama, Naoko; Yamaya, Taiga

    2016-07-01

    The accumulation of induced radioactivity within in-beam PET scanner scintillators is of concern for its long-term clinical usage in particle therapy. To estimate the effects on OpenPET which we are developing for in-beam PET based on GSOZ (Zi doped Gd2SiO5), we measured the induced radioactivity of GSO activated by secondary fragments in a water phantom irradiation by a 12C beam with an energy of 290 MeV u-1. Radioisotopes of Na, Ce, Eu, Gd, Nd, Pm and Tb including positron emitters were observed in the gamma ray spectra of the activated GSO with a high purity Ge detector and their absolute radioactivities were calculated. We used the Monte Carlo simulation platform, Geant4 in which the observed radioactivity was assigned to the scintillators of a precisely reproduced OpenPET and the single and coincidence rates immediately after one treatment and after one-year usage were estimated for the most severe conditions. Comparing the highest coincidence rate originating from the activated scintillators (background) and the expected coincidence rate from an imaging object (signal), we determined the expected signal-to-noise ratio to be more than 7 within 3 min and more than 10 within 1 min from the scan start time. We concluded the effects of scintillator activation and their accumulation on the OpenPET imaging were small and clinical long-term usage of the OpenPET was feasible.

  3. pyLIMA : an open source microlensing software

    NASA Astrophysics Data System (ADS)

    Bachelet, Etienne

    2017-01-01

    Planetary microlensing is a unique tool to detect cold planets around low-mass stars which is approaching a watershed in discoveries as near-future missions incorporate dedicated surveys. NASA and ESA have decided to complement WFIRST-AFTA and Euclid with microlensing programs to enrich our statistics about this planetary population. Of the nany challenges in- herent in these missions, the data analysis is of primary importance, yet is often perceived as time consuming, complex and daunting barrier to participation in the field. We present the first open source modeling software to conduct a microlensing analysis. This software is written in Python and use as much as possible existing packages.

  4. Open-source, Rapid Reporting of Dementia Evaluations.

    PubMed

    Graves, Rasinio S; Mahnken, Jonathan D; Swerdlow, Russell H; Burns, Jeffrey M; Price, Cathy; Amstein, Brad; Hunt, Suzanne L; Brown, Lexi; Adagarla, Bhargav; Vidoni, Eric D

    2015-01-01

    The National Institutes of Health Alzheimer's Disease Center consortium requires member institutions to build and maintain a longitudinally characterized cohort with a uniform standard data set. Increasingly, centers are employing electronic data capture to acquire data at annual evaluations. In this paper, the University of Kansas Alzheimer's Disease Center reports on an open-source system of electronic data collection and reporting to improve efficiency. This Center capitalizes on the speed, flexibility and accessibility of the system to enhance the evaluation process while rapidly transferring data to the National Alzheimer's Coordinating Center. This framework holds promise for other consortia that regularly use and manage large, standardized datasets.

  5. Open-source, Rapid Reporting of Dementia Evaluations

    PubMed Central

    Graves, Rasinio S.; Mahnken, Jonathan D.; Swerdlow, Russell H.; Burns, Jeffrey M.; Price, Cathy; Amstein, Brad; Hunt, Suzanne L; Brown, Lexi; Adagarla, Bhargav; Vidoni, Eric D.

    2016-01-01

    The National Institutes of Health Alzheimer's Disease Center consortium requires member institutions to build and maintain a longitudinally characterized cohort with a uniform standard data set. Increasingly, centers are employing electronic data capture to acquire data at annual evaluations. In this paper, the University of Kansas Alzheimer's Disease Center reports on an open-source system of electronic data collection and reporting to improve efficiency. This Center capitalizes on the speed, flexibility and accessibility of the system to enhance the evaluation process while rapidly transferring data to the National Alzheimer's Coordinating Center. This framework holds promise for other consortia that regularly use and manage large, standardized datasets. PMID:26779306

  6. An open-source java platform for automated reaction mapping.

    PubMed

    Crabtree, John D; Mehta, Dinesh P; Kouri, Tina M

    2010-09-27

    This article presents software applications that have been built upon a modular, open-source, reaction mapping library that can be used in both cheminformatics and bioinformatics research. We first describe the theoretical underpinnings and modular architecture of the core software library. We then describe two applications that have been built upon that core. The first is a generic reaction viewer and mapper, and the second classifies reactions according to rules that can be modified by end users with little or no programming skills.

  7. Review on open source operating systems for internet of things

    NASA Astrophysics Data System (ADS)

    Wang, Zhengmin; Li, Wei; Dong, Huiliang

    2017-08-01

    Internet of Things (IoT) is an environment in which everywhere and every device became smart in a smart world. Internet of Things is growing vastly; it is an integrated system of uniquely identifiable communicating devices which exchange information in a connected network to provide extensive services. IoT devices have very limited memory, computational power, and power supply. Traditional operating systems (OS) have no way to meet the needs of IoT systems. In this paper, we thus analyze the challenges of IoT OS and survey applicable open source OSs.

  8. Agile Software Management for Successful Open Source Software Projects

    NASA Astrophysics Data System (ADS)

    Bermudez, L. E.

    2016-12-01

    The Open Geospatial Consortium (OGC), is the world leader industry consortium advancing geospatial technologies to help solve global challenges. The OGC brings the geospatial community together to advance standards, best practices and tools to improve sharing of geospatial data. The OGC Compliance program provides a free online testing facility [1], a process for certification [2] of compliant products, and coordination of a vibrant community of developers. The OGC testing facility is based on TEAM Engine, an open source software that is used by OGC and other geospatial communities to test web services, schemas, data and clients. The tests, which are also open source, are encoded in an XSLT like language called Compliance Testing language (CTL) and TestNG, a Java testing framework. TEAM Engine and related projects, as well as, each test have their own GitHub repository. The OGC Compliance program currently has more than 50 repositories. Releases of new revisions of tests and TEAM Engine are done every month, following a time boxed model. GitHub issue trackers are also use due to the easiness and close integration to the source code. However, GitHub issue trackers lack of the ability to order issues following an Agile methodology. Modern project management systems use a Kanban [3] approach to manage issues in a more efficient and focused way. About 10 organizations support the compliance program. A developer of an organization can take the lead of one or more projects and can participate on issues in other projects. However, coordinating the work to be done by one developer can be challenging due to the developer's participation in different projects and the difficulty of using a Kanban [3] approach directly from GitHub. This talk will provide a practical insight to manage projects using the Agile and Kanban methodologies when multiple developers participate in multiple GitHub projects. The ideas discussed in this talk will help organizations create more efficiently

  9. Fiji - an Open Source platform for biological image analysis

    PubMed Central

    Schindelin, Johannes; Arganda-Carreras, Ignacio; Frise, Erwin; Kaynig, Verena; Longair, Mark; Pietzsch, Tobias; Preibisch, Stephan; Rueden, Curtis; Saalfeld, Stephan; Schmid, Benjamin; Tinevez, Jean-Yves; White, Daniel James; Hartenstein, Volker; Eliceiri, Kevin; Tomancak, Pavel; Cardona, Albert

    2013-01-01

    Fiji is a distribution of the popular Open Source software ImageJ focused on biological image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image processing algorithms. Fiji facilitates the transformation of novel algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities. PMID:22743772

  10. Shallow-Stack Open-Source Processing of Satellite Data

    NASA Astrophysics Data System (ADS)

    Schmidt, Albrecht

    2017-04-01

    We report on our use of standard open-source for exploratory processing of satellite images by users who are not familiar with the image contents or the details of the packaging. Navigation through archives and individual products, discovery of data and metadata, display of data, and simple analysis task are shown in very few lines of code, while leveraging standard tools. Co-location of data and code facilitate these tasks significantly. At the same time, trails of the code can be turned into instructional recipes and refined for later production use. The experimentation environment are standard Jupyter notebooks.

  11. Open Ephys electroencephalography (Open Ephys +EEG): a modular, low-cost, open-source solution to human neural recording.

    PubMed

    Black, Christopher; Voigts, Jakob; Agrawal, Uday; Ladow, Max; Santoyo, Juan; Moore, Christopher; Jones, Stephanie

    2017-03-07

    Electroencephalography (EEG) offers a unique opportunity to study human neural activity non-invasively with millisecond resolution using minimal equipment in or outside of a lab setting. EEG can be combined with a number of techniques for closed-loop experiments, where external devices are driven by specific neural signals. For example, EEG signals have been used to regulate anesthetic delivery, to control brain-computer interfaces, and to drive transcranial alternating current stimulation for the treatment of psychiatric illness. However, reliable, commercially available EEG systems are expensive, often making them impractical for individual use and research development. Moreover, by design, a majority of these systems cannot be easily altered to the specification needed by the end user. This rigidity makes it extremely difficult or infeasible to adapt EEG to novel closed-loop experiments. For instance, many current systems are not able to communicate with software and hardware from other vendors, nor are they able to achieve low-latency timescales (100 ms) necessary to operate on the fast patterns of neural activities. Recently, open-source alternatives to commercial systems have been developed that can eliminate these problems, driving down research costs and promoting collaborations and innovations. Here, we present methods to expand the use of a commercially available, open-source electrophysiology system, Open Ephys (www.openephys.org), to include human EEG recordings providing a novel technique for low-cost, easily-adaptable EEG recording. We describe the equipment and protocol necessary to interface various EEG caps with the Open Ephys acquisition board, and detail methods for processing data. We present applications of Open Ephys + EEG as a research tool and discuss how this innovative EEG technology lays a framework for improved closed-loop paradigms and novel brain-computer interface experiments.

  12. Developing Free and Open Source Interactive Teaching Tools

    NASA Astrophysics Data System (ADS)

    Nelson, E.

    2016-12-01

    Online learning has become an embedded component of education, but existing resources are often provided as institution-hosted content management systems (that may or may not be closed source). Creating interactive online applets to enhance student education is an alternative to these limited-customization systems that can be accomplished on a small budget. This presentation will break down the anatomy of author-developed online teaching tools created with open source packages to provide a survey of the development tools utilized—from the underlying website framework to interfacing with the scientific data. The availability of hosting and maintaining interactive teaching tools, whether static or dynamic, on no- or low-cost platforms will also be discussed. By constructing an interactive teaching tool from the ground up, scientists and educators are afforded complete flexibility and creativity in the design.

  13. Integrating HCI Specialists into Open Source Software Development Projects

    NASA Astrophysics Data System (ADS)

    Hedberg, Henrik; Iivari, Netta

    Typical open source software (OSS) development projects are organized around technically talented developers, whose communication is based on technical aspects and source code. Decision-making power is gained through proven competence and activity in the project, and non-technical end-user opinions are too many times neglected. In addition, also human-computer interaction (HCI) specialists have encountered difficulties in trying to participate in OSS projects, because there seems to be no clear authority and responsibility for them. In this paper, based on HCI and OSS literature, we introduce an extended OSS development project organization model that adds a new level of communication and roles for attending human aspects of software. The proposed model makes the existence of HCI specialists visible in the projects, and promotes interaction between developers and the HCI specialists in the course of a project.

  14. Inexpensive Open-Source Data Logging in the Field

    NASA Astrophysics Data System (ADS)

    Wickert, A. D.

    2013-12-01

    I present a general-purpose open-source field-capable data logger, which provides a mechanism to develop dense networks of inexpensive environmental sensors. This data logger was developed as a low-power variant of the Arduino open-source development system, and is named the ALog ("Arduino Logger") BottleLogger (it is slim enough to fit inside a Nalgene water bottle) version 1.0. It features an integrated high-precision real-time clock, SD card slot for high-volume data storage, and integrated power switching. The ALog can interface with sensors via six analog/digital pins, two digital pins, and one digital interrupt pin that can read event-based inputs, such as those from a tipping-bucket rain gauge. We have successfully tested the ALog BottleLogger with ultrasonic rangefinders (for water stage and snow accumulation and melt), temperature sensors, tipping-bucket rain gauges, soil moisture and water potential sensors, resistance-based tools to measure frost heave, and cameras that it triggers based on events. The source code for the ALog, including functions to interface with a a range of commercially-available sensors, is provided as an Arduino C++ library with example implementations. All schematics, circuit board layouts, and source code files are open-source and freely available under GNU GPL v3.0 and Creative Commons Attribution-ShareAlike 3.0 Unported licenses. Through this work, we hope to foster a community-driven movement to collect field environmental data on a budget that permits citizen-scientists and researchers from low-income countries to collect the same high-quality data as researchers in wealthy countries. These data can provide information about global change to managers, governments, scientists, and interested citizens worldwide. Watertight box with ALog BottleLogger data logger on the left and battery pack with 3 D cells on the right. Data can be collected for 3-5 years on one set of batteries.

  15. Mössbauer and Raman spectroscopy characterization of concretes used in the conditioning of spent radioactive sources

    NASA Astrophysics Data System (ADS)

    Monroy-Guzman, F.; González-Neri, M.; González-Díaz, R. C.; Ortíz-Arcivar, G.; Corona-Pérez, I. J.; Nava, N.; Cabral-Prieto, A.; Escobar-Alarcón, L.

    2015-06-01

    Spent radioactive sources are considered a type of radioactive waste which must be stored properly. These sources are usually conditioned in concrete that functions as shield and physical barrier to prevent the potential migration of radionuclides, and must have suitable properties: mechanical, thermal or irradiation resistance. Concretes used in the conditioning of spent radioactive source in Mexico were tested, preparing concrete test specimens with Portland cement CPC 30RS EXTRA CEMEX and aggregates, and subjected to compression strength, γ-ray-irradiation and thermal resistance assays and subsequently analyzed by Mössbauer and Raman Spectroscopies as well as by Scanning Electron Microscopy, in order to correlate the radiation and temperature effects on the compressive strengths, the oxidation states of iron and the structural features of the concrete. Iron was found in the concrete in Fe 2+ and Fe 3+ in the tetrahedral (T) and two octahedral positions (O1, O2). Radiolysis of water causes the dehydratation (200-600 kGy) and rehydratation (1000-10000 kGy) of calcium silicate hydrates (C-S-H) and ferric hydrate phases in concretes and structural distortion around the iron sites in concretes. The compressive strength of concretes are not significantly affected by γ-radiation or heat.

  16. Open Source: Potential in Latin America for Radiological Weapons

    DTIC Science & Technology

    2010-03-01

    state actors, their ability to transport radiological material, their nuclear knowledge, and their availability to radioactive materials. According...to transport radioactive material based on their ability to transport weapons and equipment for weapons production. We can point to two issues. First...deposits that were estimated independently at 50,000 tons. 24 This access to uranium and means of transporting weapons gives Venezuela the opportunity

  17. Digital time stamping system based on open source technologies.

    PubMed

    Miskinis, Rimantas; Smirnov, Dmitrij; Urba, Emilis; Burokas, Andrius; Malysko, Bogdan; Laud, Peeter; Zuliani, Francesco

    2010-03-01

    A digital time stamping system based on open source technologies (LINUX-UBUNTU, OpenTSA, OpenSSL, MySQL) is described in detail, including all important testing results. The system, called BALTICTIME, was developed under a project sponsored by the European Commission under the Program FP 6. It was designed to meet the requirements posed to the systems of legal and accountable time stamping and to be applicable to the hardware commonly used by the national time metrology laboratories. The BALTICTIME system is intended for the use of governmental and other institutions as well as personal bodies. Testing results demonstrate that the time stamps issued to the user by BALTICTIME and saved in BALTICTIME's archives (which implies that the time stamps are accountable) meet all the regulatory requirements. Moreover, the BALTICTIME in its present implementation is able to issue more than 10 digital time stamps per second. The system can be enhanced if needed. The test version of the BALTICTIME service is free and available at http://baltictime. pfi.lt:8080/btws/ and http://baltictime.lnmc.lv:8080/btws/.

  18. OpenDA Open Source Generic Data Assimilation Environment and its Application in Process Models

    NASA Astrophysics Data System (ADS)

    El Serafy, Ghada; Verlaan, Martin; Hummel, Stef; Weerts, Albrecht; Dhondia, Juzer

    2010-05-01

    Data Assimilation techniques are essential elements in state-of-the-art development of models and their optimization with data in the field of groundwater, surface water and soil systems. They are essential tools in calibration of complex modelling systems and improvement of model forecasts. The OpenDA is a new and generic open source data assimilation environment for application to a choice of physical process models, applied to case dependent domains. OpenDA was introduced recently when the developers of Costa, an open-source TU Delft project [http://www.costapse.org; Van Velzen and Verlaan; 2007] and those of the DATools from the former WL|Delft Hydraulics [El Serafy et al 2007; Weerts et al. 2009] decided to join forces. OpenDA makes use of a set of interfaces that describe the interaction between models, observations and data assimilation algorithms. It focuses on flexible applications in portable systems for modelling geophysical processes. It provides a generic interfacing protocol that allows combination of the implemented data assimilation techniques with, in principle, any time-stepping model duscribing a process(atmospheric processes, 3D circulation, 2D water level, sea surface temperature, soil systems, groundwater etc.). Presently, OpenDA features filtering techniques and calibration techniques. The presentation will give an overview of the OpenDA and the results of some of its practical applications. Application of data assimilation in portable operational forecasting systems—the DATools assimilation environment, El Serafy G.Y., H. Gerritsen, S. Hummel, A. H. Weerts, A.E. Mynett and M. Tanaka (2007), Journal of Ocean Dynamics, DOI 10.1007/s10236-007-0124-3, pp.485-499. COSTA a problem solving environment for data assimilation applied for hydrodynamical modelling, Van Velzen and Verlaan (2007), Meteorologische Zeitschrift, Volume 16, Number 6, December 2007 , pp. 777-793(17). Application of generic data assimilation tools (DATools) for flood

  19. Open Source, Crowd Source: Harnessing the Power of the People behind Our Libraries

    ERIC Educational Resources Information Center

    Trainor, Cindi

    2009-01-01

    Purpose: The purpose of this paper is to provide an insight into the use of Web 2.0 and Library 2.0 technologies so that librarians can combine open source software with user-generated content to create a richer discovery experience for their users. Design/methodology/approach: Following a description of the current state of integrated library…

  20. Open Source, Crowd Source: Harnessing the Power of the People behind Our Libraries

    ERIC Educational Resources Information Center

    Trainor, Cindi

    2009-01-01

    Purpose: The purpose of this paper is to provide an insight into the use of Web 2.0 and Library 2.0 technologies so that librarians can combine open source software with user-generated content to create a richer discovery experience for their users. Design/methodology/approach: Following a description of the current state of integrated library…

  1. Instrumentino: An Open-Source Software for Scientific Instruments.

    PubMed

    Koenka, Israel Joel; Sáiz, Jorge; Hauser, Peter C

    2015-01-01

    Scientists often need to build dedicated computer-controlled experimental systems. For this purpose, it is becoming common to employ open-source microcontroller platforms, such as the Arduino. These boards and associated integrated software development environments provide affordable yet powerful solutions for the implementation of hardware control of transducers and acquisition of signals from detectors and sensors. It is, however, a challenge to write programs that allow interactive use of such arrangements from a personal computer. This task is particularly complex if some of the included hardware components are connected directly to the computer and not via the microcontroller. A graphical user interface framework, Instrumentino, was therefore developed to allow the creation of control programs for complex systems with minimal programming effort. By writing a single code file, a powerful custom user interface is generated, which enables the automatic running of elaborate operation sequences and observation of acquired experimental data in real time. The framework, which is written in Python, allows extension by users, and is made available as an open source project.

  2. Fast, accurate, robust and Open Source Brain Extraction Tool (OSBET)

    NASA Astrophysics Data System (ADS)

    Namias, R.; Donnelly Kehoe, P.; D'Amato, J. P.; Nagel, J.

    2015-12-01

    The removal of non-brain regions in neuroimaging is a critical task to perform a favorable preprocessing. The skull-stripping depends on different factors including the noise level in the image, the anatomy of the subject being scanned and the acquisition sequence. For these and other reasons, an ideal brain extraction method should be fast, accurate, user friendly, open-source and knowledge based (to allow for the interaction with the algorithm in case the expected outcome is not being obtained), producing stable results and making it possible to automate the process for large datasets. There are already a large number of validated tools to perform this task but none of them meets the desired characteristics. In this paper we introduced an open source brain extraction tool (OSBET), composed of four steps using simple well-known operations such as: optimal thresholding, binary morphology, labeling and geometrical analysis that aims to assemble all the desired features. We present an experiment comparing OSBET with other six state-of-the-art techniques against a publicly available dataset consisting of 40 T1-weighted 3D scans and their corresponding manually segmented images. OSBET gave both: a short duration with an excellent accuracy, getting the best Dice Coefficient metric. Further validation should be performed, for instance, in unhealthy population, to generalize its usage for clinical purposes.

  3. Open Source Quartz Crystal Microbalance with dissipation monitoring

    NASA Astrophysics Data System (ADS)

    Mista, C.; Zalazar, M.; Peñalva, A.; Martina, M.; Reta, J. M.

    2016-04-01

    The dissipation factor and subsequently the characterization of the viscoelasticity of deposition films have become crucial for the study of biomolecular adsorption. Most of the commercial quartz crystal microbalance (QCM) systems offer this feature, but it has not been incorporated in open source systems. This article describes the design, construction, and simulation of an open source QCM module for measuring dissipation factor. The module includes two blocks: switch and envelope detector. The switch rapidly disrupts the excitation of the crystal, and connects the output to the envelope detector which demodulates the amplitude of the signal. Damped sinusoidal exponential signals with different time constant were used for simulating viscosity interfaces. The incorporation of few elements facilitated a double-faced PCB design with reduced dimensions. The results from simulation show that the system has a good performance in the range of the biomolecular processes; greater relative error are observed for time constant lower than 1 us. In conclusion, a dissipation module has been developed for calculate dissipation factor using QCM, which is compact and shows great performance for use in biomolecular adsorption.

  4. Building integrated business environments: analysing open-source ESB

    NASA Astrophysics Data System (ADS)

    Martínez-Carreras, M. A.; García Jimenez, F. J.; Gómez Skarmeta, A. F.

    2015-05-01

    Integration and interoperability are two concepts that have gained significant prominence in the business field, providing tools which enable enterprise application integration (EAI). In this sense, enterprise service bus (ESB) has played a crucial role as the underpinning technology for creating integrated environments in which companies may connect all their legacy-applications. However, the potential of these technologies remains unknown and some important features are not used to develop suitable business environments. The aim of this paper is to describe and detail the elements for building the next generation of integrated business environments (IBE) and to analyse the features of ESBs as the core of this infrastructure. For this purpose, we evaluate how well-known open-source ESB products fulfil these needs. Moreover, we introduce a scenario in which the collaborative system 'Alfresco' is integrated in the business infrastructure. Finally, we provide a comparison of the different open-source ESBs available for IBE requirements. According to this study, Fuse ESB provides the best results, considering features such as support for a wide variety of standards and specifications, documentation and implementation, security, advanced business trends, ease of integration and performance.

  5. Cellular analysis by open-source software for affordable cytometry.

    PubMed

    Mittag, Anja; Pinto, Fernanda E; Endringer, Denise C; Tarnok, Attila; Lenz, Dominik

    2011-01-01

    Image cytometry is an important technique in affordable healthcare and cellular research. Some efforts toward establishing a personal, low-cost cytometer have been described in the literature. However, a self-assembled fluorescence microscope requires software for cytometric analysis. There are some open-source image-based software analysis applications available. However, for a quantitative analysis of images, software that can generate data comparable to those of previously evaluated cytometric analyses programs is required. Hence, the aim of this study is to compare results of a commercially available image cytometry program to data obtained using the open-source software CellProfiler (CP). Leukocytes and fluorescent bead images obtained using a Laser Scanning Cytometer were analyzed by CP and the results compared with those of conventional cytometric analyses' programs. Algorithms were developed enabling the analysis of leukocytes and beads by CP. CP provided similar results to those obtained by the cytometer software. Hallmark parameters, including cell count and fluorescence intensity, revealed a high correlation in the analysis of both programs. Therefore, CP is appropriate for cellular analysis on a self-assembled microscope, thereby enabling affordable cytometry. Copyright © 2011 Wiley Periodicals, Inc.

  6. Clarity: An Open Source Manager for Laboratory Automation

    PubMed Central

    Delaney, Nigel F.; Echenique, José Rojas; Marx, Christopher J.

    2013-01-01

    Software to manage automated laboratories interfaces with hardware instruments, gives users a way to specify experimental protocols, and schedules activities to avoid hardware conflicts. In addition to these basics, modern laboratories need software that can run multiple different protocols in parallel and that can be easily extended to interface with a constantly growing diversity of techniques and instruments. We present Clarity: a laboratory automation manager that is hardware agnostic, portable, extensible and open source. Clarity provides critical features including remote monitoring, robust error reporting by phone or email, and full state recovery in the event of a system crash. We discuss the basic organization of Clarity; demonstrate an example of its implementation for the automated analysis of bacterial growth; and describe how the program can be extended to manage new hardware. Clarity is mature; well documented; actively developed; written in C# for the Common Language Infrastructure; and is free and open source software. These advantages set Clarity apart from currently available laboratory automation programs. PMID:23032169

  7. Open source projects in software engineering education: a mapping study

    NASA Astrophysics Data System (ADS)

    Nascimento, Debora M. C.; Almeida Bittencourt, Roberto; Chavez, Christina

    2015-01-01

    Context: It is common practice in academia to have students work with "toy" projects in software engineering (SE) courses. One way to make such courses more realistic and reduce the gap between academic courses and industry needs is getting students involved in open source projects (OSP) with faculty supervision. Objective: This study aims to summarize the literature on how OSP have been used to facilitate students' learning of SE. Method: A systematic mapping study was undertaken by identifying, filtering and classifying primary studies using a predefined strategy. Results: 72 papers were selected and classified. The main results were: (a) most studies focused on comprehensive SE courses, although some dealt with specific areas; (b) the most prevalent approach was the traditional project method; (c) studies' general goals were: learning SE concepts and principles by using OSP, learning open source software or both; (d) most studies tried out ideas in regular courses within the curriculum; (e) in general, students had to work with predefined projects; (f) there was a balance between approaches where instructors had either inside control or no control on the activities performed by students; (g) when learning was assessed, software artefacts, reports and presentations were the main instruments used by teachers, while surveys were widely used for students' self-assessment; (h) most studies were published in the last seven years. Conclusions: The resulting map gives an overview of the existing initiatives in this context and shows gaps where further research can be pursued.

  8. OPEN-SOURCE SOFTWARE IN DENTISTRY: A SYSTEMATIC REVIEW.

    PubMed

    Chruściel-Nogalska, Małgorzata; Smektała, Tomasz; Tutak, Marcin; Sporniak-Tutak, Katarzyna; Olszewski, Raphael

    2017-08-31

    Technological development and the need for electronic health records management resulted in the need for a computer with dedicated, commercial software in daily dental practice. The alternative for commercial software may be open-source solutions. Therefore, this study reviewed the current literature on the availability and use of open-source software (OSS) in dentistry. A comprehensive database search was performed on February 1, 2017. Only articles published in peer-reviewed journals with a focus on the use or description of OSS were retrieved. The level of evidence, according to Oxford EBM Centre Levels of Evidence Scale was classified for all studies. Experimental studies underwent additional quality reporting assessment. The screening and evaluation process resulted in twenty-one studies from 1,940 articles found, with 10 of them being experimental studies. None of the articles provided level 1 evidence, and only one study was considered high quality following quality assessment. Twenty-six different OSS programs were described in the included studies of which ten were used for image visualization, five were used for healthcare records management, four were used for educations processes, one was used for remote consultation and simulation, and six were used for general purposes. Our analysis revealed that the dental literature on OSS consists of scarce, incomplete, and methodologically low quality information.

  9. SimVascular: An Open Source Pipeline for Cardiovascular Simulation.

    PubMed

    Updegrove, Adam; Wilson, Nathan M; Merkow, Jameson; Lan, Hongzhi; Marsden, Alison L; Shadden, Shawn C

    2017-03-01

    Patient-specific cardiovascular simulation has become a paradigm in cardiovascular research and is emerging as a powerful tool in basic, translational and clinical research. In this paper we discuss the recent development of a fully open-source SimVascular software package, which provides a complete pipeline from medical image data segmentation to patient-specific blood flow simulation and analysis. This package serves as a research tool for cardiovascular modeling and simulation, and has contributed to numerous advances in personalized medicine, surgical planning and medical device design. The SimVascular software has recently been refactored and expanded to enhance functionality, usability, efficiency and accuracy of image-based patient-specific modeling tools. Moreover, SimVascular previously required several licensed components that hindered new user adoption and code management and our recent developments have replaced these commercial components to create a fully open source pipeline. These developments foster advances in cardiovascular modeling research, increased collaboration, standardization of methods, and a growing developer community.

  10. Robust, open-source removal of systematics in Kepler data

    NASA Astrophysics Data System (ADS)

    Aigrain, S.; Parviainen, H.; Roberts, S.; Reece, S.; Evans, T.

    2017-10-01

    We present ARC2 (Astrophysically Robust Correction 2), an open-source python-based systematics-correction pipeline, to correct for the Kepler prime mission long-cadence light curves. The ARC2 pipeline identifies and corrects any isolated discontinuities in the light curves and then removes trends common to many light curves. These trends are modelled using the publicly available co-trending basis vectors, within an (approximate) Bayesian framework with 'shrinkage' priors to minimize the risk of overfitting and the injection of any additional noise into the corrected light curves, while keeping any astrophysical signals intact. We show that the ARC2 pipeline's performance matches that of the standard Kepler PDC-MAP data products using standard noise metrics, and demonstrate its ability to preserve astrophysical signals using injection tests with simulated stellar rotation and planetary transit signals. Although it is not identical, the ARC2 pipeline can thus be used as an open-source alternative to PDC-MAP, whenever the ability to model the impact of the systematics removal process on other kinds of signal is important.

  11. Potassium as a Radioactive Heat Source in the Core? A High Pressure Experimental Study

    NASA Astrophysics Data System (ADS)

    Corgne, A.; Keshav, S.; Fei, Y.

    2004-12-01

    The presence of potassium (K) in the core as a significant heat source was suggested over three decades ago. Experimental studies on K partitioning between metal and silicate have provided ambiguous results, because of experimental and analytical artefacts. It has been recognized that polishing of a run product for chemical analysis using water or oil lubricants results in substantial K loss from the metallic phase [Murthy et al., 2003, Nature 423]. Using a dry polishing technique, Murthy et al showed that K enters sulfide-rich metallic liquids with a strong dependence on temperature and silicate melt composition, but without a significant dependence on pressure over the range of their study (1-3 GPa). Extrapolating their data to conditions of pressure, temperature and melt structure, appropriate to core segregation, Murthy et al concluded that K is a substantial radioactive heat source in planetary cores. Their extrapolation technique is debatable, however, notably concerning the effects of composition and pressure on the partitioning. The aim of our study is therefore to reexamine the factors that can affect K partitioning between metallic liquid and silicate melt. We have performed multi-anvil experiments on a relatively wide pressure range, between 3 and 8 GPa, using graphite capsule. In contrast to Murthy et al who used compositions with high S and K contents, we used a CI-chondrite model composition (containing about 4000 ppm K) as starting material in order to obtain partitioning data directly applicable to planetary differentiation processes. Run products were analyzed by electron microprobe. Time-series experiments at 8 GPa reveal that equilibrium conditions are reached rapidly, within 10 s. The effect of temperature was investigated at 8 GPa on the 2000-2200 C temperature range. Results shows that over this temperature range, partition coefficients for K (DK) remain almost identical. The influence of pressure was investigated at 2000 C (3-8 GPa range

  12. Ambit-Tautomer: An Open Source Tool for Tautomer Generation.

    PubMed

    Kochev, Nikolay T; Paskaleva, Vesselina H; Jeliazkova, Nina

    2013-06-01

    We present a new open source tool for automatic generation of all tautomeric forms of a given organic compound. Ambit-Tautomer is a part of the open source software package Ambit2. It implements three tautomer generation algorithms: combinatorial method, improved combinatorial method and incremental depth-first search algorithm. All algorithms utilize a set of fully customizable rules for tautomeric transformations. The predefined knowledge base covers 1-3, 1-5 and 1-7 proton tautomeric shifts. Some typical supported tautomerism rules are keto-enol, imin-amin, nitroso-oxime, azo-hydrazone, thioketo-thioenol, thionitroso-thiooxime, amidine-imidine, diazoamino-diazoamino, thioamide-iminothiol and nitrosamine-diazohydroxide. Ambit-Tautomer uses a simple energy based system for tautomer ranking implemented by a set of empirically derived rules. A fine-grained output control is achieved by a set of post-generation filters. We performed an exhaustive comparison of the Ambit-Tautomer Incremental algorithm against several other software packages which offer tautomer generation: ChemAxon Marvin, Molecular Networks MN.TAUTOMER, ACDLabs, CACTVS and the CDK implementation of the algorithm, based on the mobile H atoms listed in the InChI. According to the presented test results, Ambit-Tautomer's performance is either comparable to or better than the competing algorithms. Ambit-Tautomer module is available for download as a Java library, a command line application, a demo web page or OpenTox API compatible Web service. Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  13. Comparative Analysis Study of Open Source GIS in Malaysia

    NASA Astrophysics Data System (ADS)

    Rasid, Muhammad Zamir Abdul; Kamis, Naddia; Khuizham Abd Halim, Mohd

    2014-06-01

    Open source origin might appear like a major prospective change which is qualified to deliver in various industries and also competing means in developing countries. The leading purpose of this research study is to basically discover the degree of adopting Open Source Software (OSS) that is connected with Geographic Information System (GIS) application within Malaysia. It was derived based on inadequate awareness with regards to the origin ideas or even on account of techie deficiencies in the open origin instruments. This particular research has been carried out based on two significant stages; the first stage involved a survey questionnaire: to evaluate the awareness and acceptance level based on the comparison feedback regarding OSS and commercial GIS. This particular survey was conducted among three groups of candidates: government servant, university students and lecturers, as well as individual. The approaches of measuring awareness in this research were based on a comprehending signal plus a notion signal for each survey questions. These kinds of signs had been designed throughout the analysis in order to supply a measurable and also a descriptive signal to produce the final result. The second stage involved an interview session with a major organization that carries out available origin internet GIS; the Federal Department of Town and Country Planning Peninsular Malaysia (JPBD). The impact of this preliminary study was to understand the particular viewpoint of different groups of people on the available origin, and also their insufficient awareness with regards to origin ideas as well as likelihood may be significant root of adopting level connected with available origin options.

  14. Fpocket: An open source platform for ligand pocket detection

    PubMed Central

    Le Guilloux, Vincent; Schmidtke, Peter; Tuffery, Pierre

    2009-01-01

    Background Virtual screening methods start to be well established as effective approaches to identify hits, candidates and leads for drug discovery research. Among those, structure based virtual screening (SBVS) approaches aim at docking collections of small compounds in the target structure to identify potent compounds. For SBVS, the identification of candidate pockets in protein structures is a key feature, and the recent years have seen increasing interest in developing methods for pocket and cavity detection on protein surfaces. Results Fpocket is an open source pocket detection package based on Voronoi tessellation and alpha spheres built on top of the publicly available package Qhull. The modular source code is organised around a central library of functions, a basis for three main programs: (i) Fpocket, to perform pocket identification, (ii) Tpocket, to organise pocket detection benchmarking on a set of known protein-ligand complexes, and (iii) Dpocket, to collect pocket descriptor values on a set of proteins. Fpocket is written in the C programming language, which makes it a platform well suited for the scientific community willing to develop new scoring functions and extract various pocket descriptors on a large scale level. Fpocket 1.0, relying on a simple scoring function, is able to detect 94% and 92% of the pockets within the best three ranked pockets from the holo and apo proteins respectively, outperforming the standards of the field, while being faster. Conclusion Fpocket provides a rapid, open source and stable basis for further developments related to protein pocket detection, efficient pocket descriptor extraction, or drugablity prediction purposes. Fpocket is freely available under the GNU GPL license at . PMID:19486540

  15. Fpocket: an open source platform for ligand pocket detection.

    PubMed

    Le Guilloux, Vincent; Schmidtke, Peter; Tuffery, Pierre

    2009-06-02

    Virtual screening methods start to be well established as effective approaches to identify hits, candidates and leads for drug discovery research. Among those, structure based virtual screening (SBVS) approaches aim at docking collections of small compounds in the target structure to identify potent compounds. For SBVS, the identification of candidate pockets in protein structures is a key feature, and the recent years have seen increasing interest in developing methods for pocket and cavity detection on protein surfaces. Fpocket is an open source pocket detection package based on Voronoi tessellation and alpha spheres built on top of the publicly available package Qhull. The modular source code is organised around a central library of functions, a basis for three main programs: (i) Fpocket, to perform pocket identification, (ii) Tpocket, to organise pocket detection benchmarking on a set of known protein-ligand complexes, and (iii) Dpocket, to collect pocket descriptor values on a set of proteins. Fpocket is written in the C programming language, which makes it a platform well suited for the scientific community willing to develop new scoring functions and extract various pocket descriptors on a large scale level. Fpocket 1.0, relying on a simple scoring function, is able to detect 94% and 92% of the pockets within the best three ranked pockets from the holo and apo proteins respectively, outperforming the standards of the field, while being faster. Fpocket provides a rapid, open source and stable basis for further developments related to protein pocket detection, efficient pocket descriptor extraction, or drugablity prediction purposes. Fpocket is freely available under the GNU GPL license at http://fpocket.sourceforge.net.

  16. Combining Open-Source Packages for Planetary Exploration

    NASA Astrophysics Data System (ADS)

    Schmidt, Albrecht; Grieger, Björn; Völk, Stefan

    2015-04-01

    The science planning of the ESA Rosetta mission has presented challenges which were addressed with combining various open-source software packages, such as the SPICE toolkit, the Python language and the Web graphics library three.js. The challenge was to compute certain parameters from a pool of trajectories and (possible) attitudes to describe the behaviour of the spacecraft. To be able to do this declaratively and efficiently, a C library was implemented that allows to interface the SPICE toolkit for geometrical computations from the Python language and process as much data as possible during one subroutine call. To minimise the lines of code one has to write special care was taken to ensure that the bindings were idiomatic and thus integrate well into the Python language and ecosystem. When done well, this very much simplifies the structure of the code and facilitates the testing for correctness by automatic test suites and visual inspections. For rapid visualisation and confirmation of correctness of results, the geometries were visualised with the three.js library, a popular Javascript library for displaying three-dimensional graphics in a Web browser. Programmatically, this was achieved by generating data files from SPICE sources that were included into templated HTML and displayed by a browser, thus made easily accessible to interested parties at large. As feedback came and new ideas were to be explored, the authors benefited greatly from the design of the Python-to-SPICE library which allowed the expression of algorithms to be concise and easier to communicate. In summary, by combining several well-established open-source tools, we were able to put together a flexible computation and visualisation environment that helped communicate and build confidence in planning ideas.

  17. Transport of radioactive droplet moisture from a source in a nuclear power plant spray pond

    SciTech Connect

    Elokhin, A.P.

    1995-11-01

    In addition to a change in the microclimate in the region surrounding a nuclear power plant resulting from the emission of vapor form a cooling tower, evaporation of water from the water surface of a cooling pond or a spray pond, in the latter case direct radioactive contamination of the underlying surface around the nuclear power plant can also occur due to discharge of process water (radioactive) into the pond and its transport in the air over a certain distance in the form of droplet moisture. A typical example may be the situation at the Zaporozhe nuclear power plant in 1986 when accidental discharge of process water into the cooling pond occurred. Below we present a solution for the problem of transport of droplet moisture taking into account its evaporation, which may be used to estimate the scale of radioactive contamination of the locality.

  18. GRASS GIS: The first Open Source Temporal GIS

    NASA Astrophysics Data System (ADS)

    Gebbert, Sören; Leppelt, Thomas

    2015-04-01

    GRASS GIS is a full featured, general purpose Open Source geographic information system (GIS) with raster, 3D raster and vector processing support[1]. Recently, time was introduced as a new dimension that transformed GRASS GIS into the first Open Source temporal GIS with comprehensive spatio-temporal analysis, processing and visualization capabilities[2]. New spatio-temporal data types were introduced in GRASS GIS version 7, to manage raster, 3D raster and vector time series. These new data types are called space time datasets. They are designed to efficiently handle hundreds of thousands of time stamped raster, 3D raster and vector map layers of any size. Time stamps can be defined as time intervals or time instances in Gregorian calendar time or relative time. Space time datasets are simplifying the processing and analysis of large time series in GRASS GIS, since these new data types are used as input and output parameter in temporal modules. The handling of space time datasets is therefore equal to the handling of raster, 3D raster and vector map layers in GRASS GIS. A new dedicated Python library, the GRASS GIS Temporal Framework, was designed to implement the spatio-temporal data types and their management. The framework provides the functionality to efficiently handle hundreds of thousands of time stamped map layers and their spatio-temporal topological relations. The framework supports reasoning based on the temporal granularity of space time datasets as well as their temporal topology. It was designed in conjunction with the PyGRASS [3] library to support parallel processing of large datasets, that has a long tradition in GRASS GIS [4,5]. We will present a subset of more than 40 temporal modules that were implemented based on the GRASS GIS Temporal Framework, PyGRASS and the GRASS GIS Python scripting library. These modules provide a comprehensive temporal GIS tool set. The functionality range from space time dataset and time stamped map layer management

  19. An open source device for operant licking in rats

    PubMed Central

    Longley, Matthew; Willis, Ethan L.; Tay, Cindy X.

    2017-01-01

    We created an easy-to-use device for operant licking experiments and another device that records environmental variables. Both devices use the Raspberry Pi computer to obtain data from multiple input devices (e.g., radio frequency identification tag readers, touch and motion sensors, environmental sensors) and activate output devices (e.g., LED lights, syringe pumps) as needed. Data gathered from these devices are stored locally on the computer but can be automatically transferred to a remote server via a wireless network. We tested the operant device by training rats to obtain either sucrose or water under the control of a fixed ratio, a variable ratio, or a progressive ratio reinforcement schedule. The lick data demonstrated that the device has sufficient precision and time resolution to record the fast licking behavior of rats. Data from the environment monitoring device also showed reliable measurements. By providing the source code and 3D design under an open source license, we believe these examples will stimulate innovation in behavioral studies. The source code can be found at http://github.com/chen42/openbehavior. PMID:28229020

  20. ACToR Chemical Structure processing using Open Source ...

    EPA Pesticide Factsheets

    ACToR (Aggregated Computational Toxicology Resource) is a centralized database repository developed by the National Center for Computational Toxicology (NCCT) at the U.S. Environmental Protection Agency (EPA). Free and open source tools were used to compile toxicity data from over 1,950 public sources. ACToR contains chemical structure information and toxicological data for over 558,000 unique chemicals. The database primarily includes data from NCCT research programs, in vivo toxicity data from ToxRef, human exposure data from ExpoCast, high-throughput screening data from ToxCast and high quality chemical structure information from the EPA DSSTox program. The DSSTox database is a chemical structure inventory for the NCCT programs and currently has about 16,000 unique structures. Included are also data from PubChem, ChemSpider, USDA, FDA, NIH and several other public data sources. ACToR has been a resource to various international and national research groups. Most of our recent efforts on ACToR are focused on improving the structural identifiers and Physico-Chemical properties of the chemicals in the database. Organizing this huge collection of data and improving the chemical structure quality of the database has posed some major challenges. Workflows have been developed to process structures, calculate chemical properties and identify relationships between CAS numbers. The Structure processing workflow integrates web services (PubChem and NIH NCI Cactus) to d

  1. An Extensible Open-Source Compiler Infrastructure for Testing

    SciTech Connect

    Quinlan, D; Ur, S; Vuduc, R

    2005-12-09

    Testing forms a critical part of the development process for large-scale software, and there is growing need for automated tools that can read, represent, analyze, and transform the application's source code to help carry out testing tasks. However, the support required to compile applications written in common general purpose languages is generally inaccessible to the testing research community. In this paper, we report on an extensible, open-source compiler infrastructure called ROSE, which is currently in development at Lawrence Livermore National Laboratory. ROSE specifically targets developers who wish to build source-based tools that implement customized analyses and optimizations for large-scale C, C++, and Fortran90 scientific computing applications (on the order of a million lines of code or more). However, much of this infrastructure can also be used to address problems in testing, and ROSE is by design broadly accessible to those without a formal compiler background. This paper details the interactions between testing of applications and the ways in which compiler technology can aid in the understanding of those applications. We emphasize the particular aspects of ROSE, such as support for the general analysis of whole programs, that are particularly well-suited to the testing research community and the scale of the problems that community solves.

  2. An open source device for operant licking in rats.

    PubMed

    Longley, Matthew; Willis, Ethan L; Tay, Cindy X; Chen, Hao

    2017-01-01

    We created an easy-to-use device for operant licking experiments and another device that records environmental variables. Both devices use the Raspberry Pi computer to obtain data from multiple input devices (e.g., radio frequency identification tag readers, touch and motion sensors, environmental sensors) and activate output devices (e.g., LED lights, syringe pumps) as needed. Data gathered from these devices are stored locally on the computer but can be automatically transferred to a remote server via a wireless network. We tested the operant device by training rats to obtain either sucrose or water under the control of a fixed ratio, a variable ratio, or a progressive ratio reinforcement schedule. The lick data demonstrated that the device has sufficient precision and time resolution to record the fast licking behavior of rats. Data from the environment monitoring device also showed reliable measurements. By providing the source code and 3D design under an open source license, we believe these examples will stimulate innovation in behavioral studies. The source code can be found at http://github.com/chen42/openbehavior.

  3. Improving Data Catalogs with Free and Open Source Software

    NASA Astrophysics Data System (ADS)

    Schweitzer, R.; Hankin, S.; O'Brien, K.

    2013-12-01

    The Global Earth Observation Integrated Data Environment (GEO-IDE) is NOAA's effort to successfully integrate data and information with partners in the national US-Global Earth Observation System (US-GEO) and the international Global Earth Observation System of Systems (GEOSS). As part of the GEO-IDE, the Unified Access Framework (UAF) is working to build momentum towards the goal of increased data integration and interoperability. The UAF project is moving towards this goal with an approach that includes leveraging well known and widely used standards, as well as free and open source software. The UAF project shares the widely held conviction that the use of data standards is a key ingredient necessary to achieve interoperability. Many community-based consensus standards fail, though, due to poor compliance. Compliance problems emerge for many reasons: because the standards evolve through versions, because documentation is ambiguous or because individual data providers find the standard inadequate as-is to meet their special needs. In addition, minimalist use of standards will lead to a compliant service, but one which is of low quality. In this presentation, we will be discussing the UAF effort to build a catalog cleaning tool which is designed to crawl THREDDS catalogs, analyze the data available, and then build a 'clean' catalog of data which is standards compliant and has a uniform set of data access services available. These data services include, among others, OPeNDAP, Web Coverage Service (WCS) and Web Mapping Service (WMS). We will also discuss how we are utilizing free and open source software and services to both crawl, analyze and build the clean data catalog, as well as our efforts to help data providers improve their data catalogs. We'll discuss the use of open source software such as DataNucleus, Thematic Realtime Environmental Distributed Data Services (THREDDS), ncISO and the netCDF Java Common Data Model (CDM). We'll also demonstrate how we are

  4. Physics and 3D in Flash Simulations: Open Source Reality

    NASA Astrophysics Data System (ADS)

    Harold, J. B.; Dusenbery, P.

    2009-12-01

    Over the last decade our ability to deliver simulations over the web has steadily advanced. The improvements in speed of the Adobe Flash engine, and the development of open source tools to expand it, allow us to deliver increasingly sophisticated simulation based games through the browser, with no additional downloads required. In this paper we will present activities we are developing as part of two asteroids education projects: Finding NEO (funded through NSF and NASA SMD), and Asteroids! (funded through NSF). The first activity is Rubble!, an asteroids deflection game built on the open source Box2D physics engine. This game challenges players to push asteroids in to safe orbits before they crash in to the Earth. The Box2D engine allows us to go well beyond simple 2-body orbital calculations and incorporate “rubble piles”. These objects, which are representative of many asteroids, are composed of 50 or more individual rocks which gravitationally bind and separate in realistic ways. Even bombs can be modeled with sufficient physical accuracy to convince players of the hazards of trying to “blow up” incoming asteroids. The ability to easily build games based on underlying physical models allows us to address physical misconceptions in a natural way: by having the player operate in a world that directly collides with those misconceptions. Rubble! provides a particularly compelling example of this due to the variety of well documented misconceptions regarding gravity. The second activity is a Light Curve challenge, which uses the open source PaperVision3D tools to analyze 3D asteroid models. The goal of this activity is to introduce the player to the concept of “light curves”, measurements of asteroid brightness over time which are used to calculate the asteroid’s period. These measurements can even be inverted to generate three dimensional models of asteroids that are otherwise too small and distant to directly image. Through the use of the Paper

  5. Flood hazard mapping using open source hydrological tools

    NASA Astrophysics Data System (ADS)

    Tollenaar, Daniel; Wensveen, Lex; Winsemius, Hessel; Schellekens, Jaap

    2014-05-01

    Commonly, flood hazard maps are produced by building detailed hydrological and hydraulic models. These models are forced and parameterized by locally available, high resolution and preferably high quality data. The models use a high spatio-temporal resolution, resulting in large computational effort. Also, many hydraulic packages that solve 1D (canal) and 2D (overland) shallow water equations, are not freeware nor open source. In this contribution, we evaluate whether simplified open source data and models can be used for a rapid flood hazard assessment and to highlight areas where more detail may be required. The validity of this approach is tested by using four combinations of open-source tools: (1) a global hydrological model (PCR-GLOBWB, Van Beek and Bierkens, 2009) with a static inundation routine (GLOFRIS, Winsemius et al. 2013); (2) a global hydrological model with a dynamic inundation model (Subgrid, Stelling, 2012); (3) a local hydrological model (WFLOW) with a static inundation routine; (4) and a local hydrological model with a dynamic inundation model. The applicability of tools is assessed on (1) accuracy to reproduce the phenomenon, (2) time for model setup and (3) computational time. The performance is tested in a case study in the Rio Mamoré, one of the tributaries of the Amazone River (230,000 km2). References: Stelling, G.S.: Quadtree flood simulations with sub-grid digital elevation models, Proceedings of the ICE - Water Management, Volume 165, Issue 10, 01 November 2012 , pages 567 -580 Winsemius, H. C., Van Beek, L. P. H., Jongman, B., Ward, P. J., and Bouwman, A.: A framework for global river flood risk assessments, Hydrol. Earth Syst. Sci. Discuss., 9, 9611-9659, doi:10.5194/hessd-9-9611-2012, 2012 Van Beek, L. P. H. and Bierkens, M. F. P.: The global hydrological model PCR-GLOBWB: conceptualization, parameterization and verification, Dept. of Physical Geography, Utrecht University, Utrecht, available at: http

  6. A Small Radioactive Source in a Large Media - Localization by Multi-detector Measurement. The Case of a Lung Counter

    SciTech Connect

    Alfassi, Z. B.; Pelled, O.; German, U.

    2008-08-14

    Considerable errors in the determination of radioactive contamination in lungs can be induced if there is no homogeneous distribution, as assumed for the calibration. Modern lung counter systems use several detectors, and the count rate ratios of the detectors can be used for localization of the radioactive contamination, enabling the use of correction algorithms. This greatly reduces the errors in the determination of the activity. Further reduction of the errors can be obtained by simultaneous analysis of several gamma lines (if several energies are emitted by the radioisotope), and by optimizing the number and location of the detectors. This presentation deals with the case of a point source of natural uranium in human lungs.

  7. The Visible Human Data Sets (VHD) and Insight Toolkit (ITk): Experiments in Open Source Software

    PubMed Central

    Ackerman, Michael J.; Yoo, Terry S.

    2003-01-01

    From its inception in 1989, the Visible Human Project was designed as an experiment in open source software. In 1994 and 1995 the male and female Visible Human data sets were released by the National Library of Medicine (NLM) as open source data sets. In 2002 the NLM released the first version of the Insight Toolkit (ITk) as open source software. PMID:14728278

  8. Implementing Open Source Platform for Education Quality Enhancement in Primary Education: Indonesia Experience

    ERIC Educational Resources Information Center

    Kisworo, Marsudi Wahyu

    2016-01-01

    Information and Communication Technology (ICT)-supported learning using free and open source platform draws little attention as open source initiatives were focused in secondary or tertiary educations. This study investigates possibilities of ICT-supported learning using open source platform for primary educations. The data of this study is taken…

  9. Radioactivity in HgCdTe devices: potential source of "snowballs"

    NASA Astrophysics Data System (ADS)

    McCullough, P.

    2009-12-01

    We hypothesize that the "snowballs" observed in HgCdTe infrared detectors are caused by natural radioactivity in the devices themselves. As characterized by Hilbert (2009) in the WFC3 flight IR array (FPA165), "snowballs" are transient events that instantaneously saturate a few pixels and deposit a few hundred thousand electrons over a ~5-pixel (~100-um) diameter region. In 2008, prior to flight of detector FPA165, Hilbert (2009) detected 21 snowballs during thermal vaccum test three (TV3) and inferred a rate of ~1100 ± 200 snowballs per year per cm2 of the HgCdTe detector. Alpha particles emitted from either (or both) naturally radioactive thorium and/or uranium, at ~1 ppm concentrations within the device, can explain the observed characteristics of the "snowballs." If thorium is present, up to four distinctly observable snowballs should appear at the same location on the pixel array over the course of many years. While the indium in the bump bonds is almost entirely the radioactive isotope In-115, and 12% of the cadmium is naturally radioactive Cd-113, both of those emit only betas, which are too penetrating and not energetic enough to match the observed characteristics of "snowballs." Also, the Cd-113 emission rate is much less than that of the observed snowballs.

  10. Streamtube Fate and Transport Modeling of the Source Term for the Old Radioactive Waste

    SciTech Connect

    Brewer, K.

    2000-11-16

    The modeling described in this report is an extension of previous fate and transport modeling for the Old Radioactive Waste Burial Ground Corrective Measures Study/Feasibility Study. The purpose of this and the previous modeling is to provide quantitative input to the screening of remedial alternatives for the CMS/FS for this site.

  11. Open Source GIS Connectors to NASA GES DISC Satellite Data

    NASA Technical Reports Server (NTRS)

    Kempler, Steve; Pham, Long; Yang, Wenli

    2014-01-01

    The NASA Goddard Earth Sciences Data and Information Services Center (GES DISC) houses a suite of high spatiotemporal resolution GIS data including satellite-derived and modeled precipitation, air quality, and land surface parameter data. The data are valuable to various GIS research and applications at regional, continental, and global scales. On the other hand, many GIS users, especially those from the ArcGIS community, have difficulties in obtaining, importing, and using our data due to factors such as the variety of data products, the complexity of satellite remote sensing data, and the data encoding formats. We introduce a simple open source ArcGIS data connector that significantly simplifies the access and use of GES DISC data in ArcGIS.

  12. Development of a radiation therapy open-source platform.

    PubMed

    Grunwald, Oxana; Ruhlmann, Jurgen; Buzug, Thorsten

    2005-01-01

    Although several industrial radio-therapy planning solutions presently exist, most of them do not cover the customer needs sufficiently. The aim of this project is to develop an open source radio-therapy planning system that would offer the ground work for individual customer solutions. During the first stage of the project we concentrate on the development of a visualisation module, since it is required for other parts such as dose calculation and beam modelling. The visualisation module will feature 2D and 3D visualisation of CT-, MRI- and PET DICOM images, registration of the images using Normalised Mutual Information, 2D and 3D visualisation of the matched images as well as 2D and 3D user interaction. In this paper an outline for our system is presented as well as a registration module, which is the first part of the visualisation module.

  13. Open-Source Java for Teaching Computational Physics

    NASA Astrophysics Data System (ADS)

    Wolfgang, Christian; Gould, Harvey; Gould, Joshua; Tobochnik, Jan

    2001-11-01

    The switch from procedural to object-oriented (OO) programming has produced dramatic changes in professional software design. OO techniques have not, however, been widely adopted in computational physics. Although most physicists are familiar with procedural languages such as Fortran, few physicists have formal training in computer science and few therefore have made the switch to OO programming. The continued use of procedural languages in education is due, in part, to the lack of up-to-date curricular materials that combine current computational physics research topics with an OO framework. This talk describes an Open-Source curriculum development project to produce such material. Examples will be presented that show how OO techniques can be used to encapsulate the relevant Physics, the analysis, and the associated numerical methods.

  14. Open-Source Software in Computational Research: A Case Study

    DOE PAGES

    Syamlal, Madhava; O'Brien, Thomas J.; Benyahia, Sofiane; ...

    2008-01-01

    A case study of open-source (OS) development of the computational research software MFIX, used for multiphase computational fluid dynamics simulations, is presented here. The verification and validation steps required for constructing modern computational software and the advantages of OS development in those steps are discussed. The infrastructure used for enabling the OS development of MFIX is described. The impact of OS development on computational research and education in gas-solids flow, as well as the dissemination of information to other areas such as geophysical and volcanology research, is demonstrated. This study shows that the advantages of OS development were realized inmore » the case of MFIX: verification by many users, which enhances software quality; the use of software as a means for accumulating and exchanging information; the facilitation of peer review of the results of computational research.« less

  15. IP address management : augmenting Sandia's capabilities through open source tools.

    SciTech Connect

    Nayar, R. Daniel

    2005-08-01

    Internet Protocol (IP) address management is an increasingly growing concern at Sandia National Laboratories (SNL) and the networking community as a whole. The current state of the available IP addresses indicates that they are nearly exhausted. Currently SNL doesn't have the justification to obtain more IP address space from Internet Assigned Numbers Authority (IANA). There must exist a local entity to manage and allocate IP assignments efficiently. Ongoing efforts at Sandia have been in the form of a multifunctional database application notably known as Network Information System (NWIS). NWIS is a database responsible for a multitude of network administrative services including IP address management. This study will explore the feasibility of augmenting NWIS's IP management capabilities utilizing open source tools. Modifications of existing capabilities to better allocate available IP address space are studied.

  16. Introducing djatoka: a reuse friendly, open source JPEG image server

    SciTech Connect

    Chute, Ryan M; Van De Sompel, Herbert

    2008-01-01

    The ISO-standardized JPEG 2000 image format has started to attract significant attention. Support for the format is emerging in major consumer applications, and the cultural heritage community seriously considers it a viable format for digital preservation. So far, only commercial image servers with JPEG 2000 support have been available. They come with significant license fees and typically provide the customers with limited extensibility capabilities. Here, we introduce djatoka, an open source JPEG 2000 image server with an attractive basic feature set, and extensibility under control of the community of implementers. We describe djatoka, and point at demonstrations that feature digitized images of marvelous historical manuscripts from the collections of the British Library and the University of Ghent. We also caIl upon the community to engage in further development of djatoka.

  17. Spatial Dmbs Architecture for a Free and Open Source Bim

    NASA Astrophysics Data System (ADS)

    Logothetis, S.; Valari, E.; Karachaliou, E.; Stylianidis, E.

    2017-08-01

    Recent research on the field of Building Information Modelling (BIM) technology, revealed that except of a few, accessible and free BIM viewers there is a lack of Free & Open Source Software (FOSS) BIM software for the complete BIM process. With this in mind and considering BIM as the technological advancement of Computer-Aided Design (CAD) systems, the current work proposes the use of a FOSS CAD software in order to extend its capabilities and transform it gradually into a FOSS BIM platform. Towards this undertaking, a first approach on developing a spatial Database Management System (DBMS) able to store, organize and manage the overall amount of information within a single application, is presented.

  18. Open source cardiology electronic health record development for DIGICARDIAC implementation

    NASA Astrophysics Data System (ADS)

    Dugarte, Nelson; Medina, Rubén.; Huiracocha, Lourdes; Rojas, Rubén.

    2015-12-01

    This article presents the development of a Cardiology Electronic Health Record (CEHR) system. Software consists of a structured algorithm designed under Health Level-7 (HL7) international standards. Novelty of the system is the integration of high resolution ECG (HRECG) signal acquisition and processing tools, patient information management tools and telecardiology tools. Acquisition tools are for management and control of the DIGICARDIAC electrocardiograph functions. Processing tools allow management of HRECG signal analysis searching for indicative patterns of cardiovascular pathologies. Telecardiology tools incorporation allows system communication with other health care centers decreasing access time to the patient information. CEHR system was completely developed using open source software. Preliminary results of process validation showed the system efficiency.

  19. Open-source products for a lighting experiment device.

    PubMed

    Gildea, Kevin M; Milburn, Nelda

    2014-12-01

    The capabilities of open-source software and microcontrollers were used to construct a device for controlled lighting experiments. The device was designed to ascertain whether individuals with certain color vision deficiencies were able to discriminate between the red and white lights in fielded systems on the basis of luminous intensity. The device provided the ability to control the timing and duration of light-emitting diode (LED) and incandescent light stimulus presentations, to present the experimental sequence and verbal instructions automatically, to adjust LED and incandescent luminous intensity, and to display LED and incandescent lights with various spectral emissions. The lighting device could easily be adapted for experiments involving flashing or timed presentations of colored lights, or the components could be expanded to study areas such as threshold light perception and visual alerting systems.

  20. Management of Astronomical Software Projects with Open Source Tools

    NASA Astrophysics Data System (ADS)

    Briegel, F.; Bertram, T.; Berwein, J.; Kittmann, F.

    2010-12-01

    In this paper we will offer an innovative approach to managing the software development process with free open source tools, for building and automated testing, a system to automate the compile/test cycle on a variety of platforms to validate code changes, using virtualization to compile in parallel on various operating system platforms, version control and change management, enhanced wiki and issue tracking system for online documentation and reporting and groupware tools as they are: blog, discussion and calendar. Initially starting with the Linc-Nirvana instrument a new project and configuration management tool for developing astronomical software was looked for. After evaluation of various systems of this kind, we are satisfied with the selection we are using now. Following the lead of Linc-Nirvana most of the other software projects at the MPIA are using it now.