Science.gov

Sample records for open software development

  1. Open Source Software Development

    DTIC Science & Technology

    2011-01-01

    Agency’s XMM-Newton Observatory, the Sloan Digital Sky Survey, and others. These are three highly visible astrophysics research projects whose...In scientific fields like astrophysics that critically depend on software, open source is considered an essential precondition for research to...space are made, this in turn often leads to modification, extension, and new versions of the astronomical software in use that enable astrophysical

  2. Communal Resources in Open Source Software Development

    ERIC Educational Resources Information Center

    Spaeth, Sebastian; Haefliger, Stefan; von Krogh, Georg; Renzl, Birgit

    2008-01-01

    Introduction: Virtual communities play an important role in innovation. The paper focuses on the particular form of collective action in virtual communities underlying as Open Source software development projects. Method: Building on resource mobilization theory and private-collective innovation, we propose a theory of collective action in…

  3. Embracing Open Software Development in Solar Physics

    NASA Astrophysics Data System (ADS)

    Hughitt, V. K.; Ireland, J.; Christe, S.; Mueller, D.

    2012-12-01

    We discuss two ongoing software projects in solar physics that have adopted best practices of the open source software community. The first, the Helioviewer Project, is a powerful data visualization tool which includes online and Java interfaces inspired by Google Maps (tm). This effort allows users to find solar features and events of interest, and download the corresponding data. Having found data of interest, the user now has to analyze it. The dominant solar data analysis platform is an open-source library called SolarSoft (SSW). Although SSW itself is open-source, the programming language used is IDL, a proprietary language with licensing costs that are prohibative for many institutions and individuals. SSW is composed of a collection of related scripts written by missions and individuals for solar data processing and analysis, without any consistent data structures or common interfaces. Further, at the time when SSW was initially developed, many of the best software development processes of today (mirrored and distributed version control, unit testing, continuous integration, etc.) were not standard, and have not since been adopted. The challenges inherent in developing SolarSoft led to a second software project known as SunPy. SunPy is an open-source Python-based library which seeks to create a unified solar data analysis environment including a number of core datatypes such as Maps, Lightcurves, and Spectra which have consistent interfaces and behaviors. By taking advantage of the large and sophisticated body of scientific software already available in Python (e.g. SciPy, NumPy, Matplotlib), and by adopting many of the best practices refined in open-source software development, SunPy has been able to develop at a very rapid pace while still ensuring a high level of reliability. The Helioviewer Project and SunPy represent two pioneering technologies in solar physics - simple yet flexible data visualization and a powerful, new data analysis environment. We

  4. Teaching Undergraduate Software Engineering Using Open Source Development Tools

    DTIC Science & Technology

    2012-01-01

    on Computer Science Education (SIGCSE 󈧏), 153- 158. Pandey, R. (2009). Exploiting web resources for teaching /learning best software design tips...Issues in Informing Science and Information Technology Volume 9, 2012 Teaching Undergraduate Software Engineering Using Open Source Development...multi-course sequence, to teach students both the theoretical concepts of soft- ware development as well as the practical aspects of developing software

  5. Developing an Open Source Option for NASA Software

    NASA Technical Reports Server (NTRS)

    Moran, Patrick J.; Parks, John W. (Technical Monitor)

    2003-01-01

    We present arguments in favor of developing an Open Source option for NASA software; in particular we discuss how Open Source is compatible with NASA's mission. We compare and contrast several of the leading Open Source licenses, and propose one - the Mozilla license - for use by NASA. We also address some of the related issues for NASA with respect to Open Source. In particular, we discuss some of the elements in the External Release of NASA Software document (NPG 2210.1A) that will likely have to be changed in order to make Open Source a reality withm the agency.

  6. OpenADR Open Source Toolkit: Developing Open Source Software for the Smart Grid

    SciTech Connect

    McParland, Charles

    2011-02-01

    Demand response (DR) is becoming an increasingly important part of power grid planning and operation. The advent of the Smart Grid, which mandates its use, further motivates selection and development of suitable software protocols to enable DR functionality. The OpenADR protocol has been developed and is being standardized to serve this goal. We believe that the development of a distributable, open source implementation of OpenADR will benefit this effort and motivate critical evaluation of its capabilities, by the wider community, for providing wide-scale DR services

  7. Bioconductor: open software development for computational biology and bioinformatics

    PubMed Central

    Gentleman, Robert C; Carey, Vincent J; Bates, Douglas M; Bolstad, Ben; Dettling, Marcel; Dudoit, Sandrine; Ellis, Byron; Gautier, Laurent; Ge, Yongchao; Gentry, Jeff; Hornik, Kurt; Hothorn, Torsten; Huber, Wolfgang; Iacus, Stefano; Irizarry, Rafael; Leisch, Friedrich; Li, Cheng; Maechler, Martin; Rossini, Anthony J; Sawitzki, Gunther; Smith, Colin; Smyth, Gordon; Tierney, Luke; Yang, Jean YH; Zhang, Jianhua

    2004-01-01

    The Bioconductor project is an initiative for the collaborative creation of extensible software for computational biology and bioinformatics. The goals of the project include: fostering collaborative development and widespread use of innovative software, reducing barriers to entry into interdisciplinary scientific research, and promoting the achievement of remote reproducibility of research results. We describe details of our aims and methods, identify current challenges, compare Bioconductor to other open bioinformatics projects, and provide working examples. PMID:15461798

  8. An Investigation of an Open-Source Software Development Environment in a Software Engineering Graduate Course

    ERIC Educational Resources Information Center

    Ge, Xun; Huang, Kun; Dong, Yifei

    2010-01-01

    A semester-long ethnography study was carried out to investigate project-based learning in a graduate software engineering course through the implementation of an Open-Source Software Development (OSSD) learning environment, which featured authentic projects, learning community, cognitive apprenticeship, and technology affordances. The study…

  9. Integrating HCI Specialists into Open Source Software Development Projects

    NASA Astrophysics Data System (ADS)

    Hedberg, Henrik; Iivari, Netta

    Typical open source software (OSS) development projects are organized around technically talented developers, whose communication is based on technical aspects and source code. Decision-making power is gained through proven competence and activity in the project, and non-technical end-user opinions are too many times neglected. In addition, also human-computer interaction (HCI) specialists have encountered difficulties in trying to participate in OSS projects, because there seems to be no clear authority and responsibility for them. In this paper, based on HCI and OSS literature, we introduce an extended OSS development project organization model that adds a new level of communication and roles for attending human aspects of software. The proposed model makes the existence of HCI specialists visible in the projects, and promotes interaction between developers and the HCI specialists in the course of a project.

  10. Open Crowdsourcing: Leveraging Community Software Developers for IT Projects

    ERIC Educational Resources Information Center

    Phair, Derek

    2012-01-01

    This qualitative exploratory single-case study was designed to examine and understand the use of volunteer community participants as software developers and other project related roles, such as testers, in completing a web-based application project by a non-profit organization. This study analyzed the strategic decision to engage crowd…

  11. Inequalities in Open Source Software Development: Analysis of Contributor's Commits in Apache Software Foundation Projects.

    PubMed

    Chełkowski, Tadeusz; Gloor, Peter; Jemielniak, Dariusz

    2016-01-01

    While researchers are becoming increasingly interested in studying OSS phenomenon, there is still a small number of studies analyzing larger samples of projects investigating the structure of activities among OSS developers. The significant amount of information that has been gathered in the publicly available open-source software repositories and mailing-list archives offers an opportunity to analyze projects structures and participant involvement. In this article, using on commits data from 263 Apache projects repositories (nearly all), we show that although OSS development is often described as collaborative, but it in fact predominantly relies on radically solitary input and individual, non-collaborative contributions. We also show, in the first published study of this magnitude, that the engagement of contributors is based on a power-law distribution.

  12. Common characteristics of open source software development and applicability for drug discovery: a systematic review

    PubMed Central

    2011-01-01

    Background Innovation through an open source model has proven to be successful for software development. This success has led many to speculate if open source can be applied to other industries with similar success. We attempt to provide an understanding of open source software development characteristics for researchers, business leaders and government officials who may be interested in utilizing open source innovation in other contexts and with an emphasis on drug discovery. Methods A systematic review was performed by searching relevant, multidisciplinary databases to extract empirical research regarding the common characteristics and barriers of initiating and maintaining an open source software development project. Results Common characteristics to open source software development pertinent to open source drug discovery were extracted. The characteristics were then grouped into the areas of participant attraction, management of volunteers, control mechanisms, legal framework and physical constraints. Lastly, their applicability to drug discovery was examined. Conclusions We believe that the open source model is viable for drug discovery, although it is unlikely that it will exactly follow the form used in software development. Hybrids will likely develop that suit the unique characteristics of drug discovery. We suggest potential motivations for organizations to join an open source drug discovery project. We also examine specific differences between software and medicines, specifically how the need for laboratories and physical goods will impact the model as well as the effect of patents. PMID:21955914

  13. Using Open Source Software in Visual Simulation Development

    DTIC Science & Technology

    2005-09-01

    good graphics card adapter that supports one of the main technologies: DirectX or OpenGL. 9 10 These are the two dominant technologies and both are...web surfing (22%), watching TV (22%), playing videogames (16%), watching movies (15%), reading a book or magazine (6%) and listening to or playing...effects can be used, but it must be understood that their use is limited. PC Visual simulation based training seems like a good fit in terms of low-cost

  14. Developing Open Source Software To Advance High End Computing. Report to the President.

    ERIC Educational Resources Information Center

    National Coordination Office for Information Technology Research and Development, Arlington, VA.

    This is part of a series of reports to the President and Congress developed by the President's Information Technology Advisory Committee (PITAC) on key contemporary issues in information technology. This report defines open source software, explains PITAC's interest in this model, describes the process used to investigate issues in open source…

  15. Reflection on the Process of Open Sourcing Software Based on Ten Years of Development of RAPID

    NASA Astrophysics Data System (ADS)

    David, C. H.; Famiglietti, J. S.; Yang, Z. L.; Habets, F.; Maidment, D.

    2015-12-01

    As the number and size of geoscience datasets persist in their constant rise, geoscientists increasingly express their yearning for further sharing of their data and software, and for facilitation of the associated academic credits. We present here our experience based on the open source development of an Earth System Model focusing on the propagation of water flow waves in large river networks: the Routing Application for Parallel computatIon of Discharge (RAPID). Since inception of RAPID ten years ago in January 2006, the community of its users has grown slowly but steadily, and now includes researchers in industry, academia, and government organizations. This growth of the RAPID users community can be explained - at least in part - by its open availability. However, despite an increasing support for open science (software and data), the mechanics of sharing still remain mysterious to many geoscientists… as they were for the authors. The purpose of this presentation is therefore to shed light on the steps involved in opening software and data based on a decade of experience related to the development and release of an Earth System Model. Three distinct steps of open sourcing are highlighted here: opening, exposing, and automatic testing. Each one of these steps is presented as an independent and tractable increment at various stages of development that is justified based on the size of the users community. Topics covered include software and data licenses, code and data repositories, unit testing, and continuous integration.

  16. The Five 'R's' for Developing Trusted Software Frameworks to increase confidence in, and maximise reuse of, Open Source Software.

    NASA Astrophysics Data System (ADS)

    Fraser, Ryan; Gross, Lutz; Wyborn, Lesley; Evans, Ben; Klump, Jens

    2015-04-01

    Recent investments in HPC, cloud and Petascale data stores, have dramatically increased the scale and resolution that earth science challenges can now be tackled. These new infrastructures are highly parallelised and to fully utilise them and access the large volumes of earth science data now available, a new approach to software stack engineering needs to be developed. The size, complexity and cost of the new infrastructures mean any software deployed has to be reliable, trusted and reusable. Increasingly software is available via open source repositories, but these usually only enable code to be discovered and downloaded. As a user it is hard for a scientist to judge the suitability and quality of individual codes: rarely is there information on how and where codes can be run, what the critical dependencies are, and in particular, on the version requirements and licensing of the underlying software stack. A trusted software framework is proposed to enable reliable software to be discovered, accessed and then deployed on multiple hardware environments. More specifically, this framework will enable those who generate the software, and those who fund the development of software, to gain credit for the effort, IP, time and dollars spent, and facilitate quantification of the impact of individual codes. For scientific users, the framework delivers reviewed and benchmarked scientific software with mechanisms to reproduce results. The trusted framework will have five separate, but connected components: Register, Review, Reference, Run, and Repeat. 1) The Register component will facilitate discovery of relevant software from multiple open source code repositories. The registration process of the code should include information about licensing, hardware environments it can be run on, define appropriate validation (testing) procedures and list the critical dependencies. 2) The Review component is targeting on the verification of the software typically against a set of

  17. Develop Direct Geo-referencing System Based on Open Source Software and Hardware Platform

    NASA Astrophysics Data System (ADS)

    Liu, H. S.; Liao, H. M.

    2015-08-01

    Direct geo-referencing system uses the technology of remote sensing to quickly grasp images, GPS tracks, and camera position. These data allows the construction of large volumes of images with geographic coordinates. So that users can be measured directly on the images. In order to properly calculate positioning, all the sensor signals must be synchronized. Traditional aerial photography use Position and Orientation System (POS) to integrate image, coordinates and camera position. However, it is very expensive. And users could not use the result immediately because the position information does not embed into image. To considerations of economy and efficiency, this study aims to develop a direct geo-referencing system based on open source software and hardware platform. After using Arduino microcontroller board to integrate the signals, we then can calculate positioning with open source software OpenCV. In the end, we use open source panorama browser, panini, and integrate all these to open source GIS software, Quantum GIS. A wholesome collection of data - a data processing system could be constructed.

  18. Developing a practical toxicogenomics data analysis system utilizing open-source software.

    PubMed

    Hirai, Takehiro; Kiyosawa, Naoki

    2013-01-01

    Comprehensive gene expression analysis has been applied to investigate the molecular mechanism of toxicity, which is generally known as toxicogenomics (TGx). When analyzing large-scale gene expression data obtained by microarray analysis, typical multivariate data analysis methods performed with commercial software such as hierarchical clustering or principal component analysis usually do not provide conclusive outputs by themselves. To best utilize the TGx data for toxicity evaluation in the drug development process, fit-for-purpose customization of the analytical algorithm with user-friendly interface and intuitive outputs are required to practically address the toxicologists' demands. However, commercial software is usually not very flexible in the customization of their functions or outputs. Owing to the recent advancement and accumulation of open-source software contributed by bioinformaticians all over the world, it becomes easier for us to develop practical and fit-for-purpose analytical software by ourselves with fairly low cost and efforts. The aim of this article is to present an example of developing an automated TGx data processing system (ATP system), which implements gene set-level analysis toxicogenomic profiling by D-score method and generates straightforward output that makes it easy to interpret the biological and toxicological significance of the TGx data. Our example will provide basic clues for readers to develop and customize their own TGx data analysis system which complements the function of existing commercial software.

  19. Inequalities in Open Source Software Development: Analysis of Contributor’s Commits in Apache Software Foundation Projects

    PubMed Central

    2016-01-01

    While researchers are becoming increasingly interested in studying OSS phenomenon, there is still a small number of studies analyzing larger samples of projects investigating the structure of activities among OSS developers. The significant amount of information that has been gathered in the publicly available open-source software repositories and mailing-list archives offers an opportunity to analyze projects structures and participant involvement. In this article, using on commits data from 263 Apache projects repositories (nearly all), we show that although OSS development is often described as collaborative, but it in fact predominantly relies on radically solitary input and individual, non-collaborative contributions. We also show, in the first published study of this magnitude, that the engagement of contributors is based on a power-law distribution. PMID:27096157

  20. Development of a web application for water resources based on open source software

    NASA Astrophysics Data System (ADS)

    Delipetrev, Blagoj; Jonoski, Andreja; Solomatine, Dimitri P.

    2014-01-01

    This article presents research and development of a prototype web application for water resources using latest advancements in Information and Communication Technologies (ICT), open source software and web GIS. The web application has three web services for: (1) managing, presenting and storing of geospatial data, (2) support of water resources modeling and (3) water resources optimization. The web application is developed using several programming languages (PhP, Ajax, JavaScript, Java), libraries (OpenLayers, JQuery) and open source software components (GeoServer, PostgreSQL, PostGIS). The presented web application has several main advantages: it is available all the time, it is accessible from everywhere, it creates a real time multi-user collaboration platform, the programing languages code and components are interoperable and designed to work in a distributed computer environment, it is flexible for adding additional components and services and, it is scalable depending on the workload. The application was successfully tested on a case study with concurrent multi-users access.

  1. Open Source Software Development Experiences on the Students' Resumes: Do They Count?--Insights from the Employers' Perspectives

    ERIC Educational Resources Information Center

    Long, Ju

    2009-01-01

    Open Source Software (OSS) is a major force in today's Information Technology (IT) landscape. Companies are increasingly using OSS in mission-critical applications. The transparency of the OSS technology itself with openly available source codes makes it ideal for students to participate in the OSS project development. OSS can provide unique…

  2. Open-source software: not quite endsville.

    PubMed

    Stahl, Matthew T

    2005-02-01

    Open-source software will never achieve ubiquity. There are environments in which it simply does not flourish. By its nature, open-source development requires free exchange of ideas, community involvement, and the efforts of talented and dedicated individuals. However, pressures can come from several sources that prevent this from happening. In addition, openness and complex licensing issues invite misuse and abuse. Care must be taken to avoid the pitfalls of open-source software.

  3. Creating an open environment software infrastructure

    NASA Technical Reports Server (NTRS)

    Jipping, Michael J.

    1992-01-01

    As the development of complex computer hardware accelerates at increasing rates, the ability of software to keep pace is essential. The development of software design tools, however, is falling behind the development of hardware for several reasons, the most prominent of which is the lack of a software infrastructure to provide an integrated environment for all parts of a software system. The research was undertaken to provide a basis for answering this problem by investigating the requirements of open environments.

  4. Applying Open Source Software in a Development Context: Expectations and Experiences. A Case Study of a University in Uganda

    ERIC Educational Resources Information Center

    van Reijswoud, Victor; Mulo, Emmanuel

    2006-01-01

    Over recent years the issue of free and open source software (FOSS) for development in less developed countries (LDCs) has received increasing attention. In the beginning the benefits of FOSS for lower developed countries was only stressed by small groups of idealists like Richard Stallman. Now, however, it is moving into the hands of large…

  5. OSIRIX: open source multimodality image navigation software

    NASA Astrophysics Data System (ADS)

    Rosset, Antoine; Pysher, Lance; Spadola, Luca; Ratib, Osman

    2005-04-01

    The goal of our project is to develop a completely new software platform that will allow users to efficiently and conveniently navigate through large sets of multidimensional data without the need of high-end expensive hardware or software. We also elected to develop our system on new open source software libraries allowing other institutions and developers to contribute to this project. OsiriX is a free and open-source imaging software designed manipulate and visualize large sets of medical images: http://homepage.mac.com/rossetantoine/osirix/

  6. The Emergence of Open-Source Software in China

    ERIC Educational Resources Information Center

    Pan, Guohua; Bonk, Curtis J.

    2007-01-01

    The open-source software movement is gaining increasing momentum in China. Of the limited numbers of open-source software in China, "Red Flag Linux" stands out most strikingly, commanding 30 percent share of Chinese software market. Unlike the spontaneity of open-source movement in North America, open-source software development in…

  7. Development of an Open Source Image-Based Flow Modeling Software - SimVascular

    NASA Astrophysics Data System (ADS)

    Updegrove, Adam; Merkow, Jameson; Schiavazzi, Daniele; Wilson, Nathan; Marsden, Alison; Shadden, Shawn

    2014-11-01

    SimVascular (www.simvascular.org) is currently the only comprehensive software package that provides a complete pipeline from medical image data segmentation to patient specific blood flow simulation. This software and its derivatives have been used in hundreds of conference abstracts and peer-reviewed journal articles, as well as the foundation of medical startups. SimVascular was initially released in August 2007, yet major challenges and deterrents for new adopters were the requirement of licensing three expensive commercial libraries utilized by the software, a complicated build process, and a lack of documentation, support and organized maintenance. In the past year, the SimVascular team has made significant progress to integrate open source alternatives for the linear solver, solid modeling, and mesh generation commercial libraries required by the original public release. In addition, the build system, available distributions, and graphical user interface have been significantly enhanced. Finally, the software has been updated to enable users to directly run simulations using models and boundary condition values, included in the Vascular Model Repository (vascularmodel.org). In this presentation we will briefly overview the capabilities of the new SimVascular 2.0 release. National Science Foundation.

  8. Towards the Application of Open Source Software in Developing National Electronic Health Record-Narrative Review Article

    PubMed Central

    AMINPOUR, Farzaneh; SADOUGHI, Farahnaz; AHMADI, Maryam

    2013-01-01

    Abstract Electronic Health Record (EHR) is a repository of patient health information shared among multiple authorized users. As a modern method of storing and processing health information, it is a solution for improving quality, safety and efficiency of patient care and health system. However, establishment of EHR requires a significant investment of time and money. While many of healthcare providers have very limited capital, application of open source software would be considered as a solution in developing national electronic health record especially in countries with low income. The evidence showed that financial limitation is one of the obstacles to implement electronic health records in developing countries. Therefore, establishment of an open source EHR system capable of modifications according to the national requirements seems to be inevitable in Iran. The present study identifies the impact of application of open source software in developing national electronic health record in Iran. PMID:26060634

  9. Open Source Software and the Intellectual Commons.

    ERIC Educational Resources Information Center

    Dorman, David

    2002-01-01

    Discusses the Open Source Software method of software development and its relationship to control over information content. Topics include digital library resources; reference services; preservation; the legal and economic status of information; technical standards; access to digital data; control of information use; and copyright and patent laws.…

  10. Open architectures for formal reasoning and deductive technologies for software development

    NASA Technical Reports Server (NTRS)

    Mccarthy, John; Manna, Zohar; Mason, Ian; Pnueli, Amir; Talcott, Carolyn; Waldinger, Richard

    1994-01-01

    The objective of this project is to develop an open architecture for formal reasoning systems. One goal is to provide a framework with a clear semantic basis for specification and instantiation of generic components; construction of complex systems by interconnecting components; and for making incremental improvements and tailoring to specific applications. Another goal is to develop methods for specifying component interfaces and interactions to facilitate use of existing and newly built systems as 'off the shelf' components, thus helping bridge the gap between producers and consumers of reasoning systems. In this report we summarize results in several areas: our data base of reasoning systems; a theory of binding structures; a theory of components of open systems; a framework for specifying components of open reasoning system; and an analysis of the integration of rewriting and linear arithmetic modules in Boyer-Moore using the above framework.

  11. On Open and Collaborative Software Development in the DoD

    DTIC Science & Technology

    2010-04-30

    Development in the DoD Hissam, 12 May 2010 © 2010 Carnegie Mellon University Collaboration “Fusion” architectures standards tools processes results data ... Collaboration fusion occurs when the right catalyst (incentive) is used to initiate and sustain and open and collaborative community sharing of all

  12. The Emergence of Open-Source Software in North America

    ERIC Educational Resources Information Center

    Pan, Guohua; Bonk, Curtis J.

    2007-01-01

    Unlike conventional models of software development, the open source model is based on the collaborative efforts of users who are also co-developers of the software. Interest in open source software has grown exponentially in recent years. A "Google" search for the phrase open source in early 2005 returned 28.8 million webpage hits, while…

  13. Development of an open source software module for enhanced visualization during MR-guided interstitial gynecologic brachytherapy.

    PubMed

    Chen, Xiaojun; Egger, Jan

    2014-01-01

    In 2010, gynecologic malignancies were the 4th leading cause of death in U.S. women and for patients with extensive primary or recurrent disease, treatment with interstitial brachytherapy may be an option. However, brachytherapy requires precise insertion of hollow catheters with introducers into the tumor in order to eradicate the cancer. In this study, a software solution to assist interstitial gynecologic brachytherapy has been investigated and the software has been realized as an own module under (3D) Slicer, which is a free open source software platform for (translational) biomedical research. The developed research module allows on-time processing of intra-operative magnetic resonance imaging (iMRI) data over a direct DICOM connection to a MR scanner. Afterwards follows a multi-stage registration of CAD models of the medical brachytherapy devices (template, obturator) to the patient's MR images, enabling the virtual placement of interstitial needles to assist the physician during the intervention.

  14. Software Reuse in the Naval Open Architecture

    DTIC Science & Technology

    2008-03-01

    productivity, better quality, and a decrease in time to market for products. Software reuse is a quickly developing underlying pillar of the Naval Open...rapid application development, fastest time to market for updates and keeping up with the Internet technology wars. The last fifty years have seen...collaborations, working software, and responding to change. The enterprise that can get a product or service to market first wins. Organizations

  15. Open source software to control Bioflo bioreactors.

    PubMed

    Burdge, David A; Libourel, Igor G L

    2014-01-01

    Bioreactors are designed to support highly controlled environments for growth of tissues, cell cultures or microbial cultures. A variety of bioreactors are commercially available, often including sophisticated software to enhance the functionality of the bioreactor. However, experiments that the bioreactor hardware can support, but that were not envisioned during the software design cannot be performed without developing custom software. In addition, support for third party or custom designed auxiliary hardware is often sparse or absent. This work presents flexible open source freeware for the control of bioreactors of the Bioflo product family. The functionality of the software includes setpoint control, data logging, and protocol execution. Auxiliary hardware can be easily integrated and controlled through an integrated plugin interface without altering existing software. Simple experimental protocols can be entered as a CSV scripting file, and a Python-based protocol execution model is included for more demanding conditional experimental control. The software was designed to be a more flexible and free open source alternative to the commercially available solution. The source code and various auxiliary hardware plugins are publicly available for download from https://github.com/LibourelLab/BiofloSoftware. In addition to the source code, the software was compiled and packaged as a self-installing file for 32 and 64 bit windows operating systems. The compiled software will be able to control a Bioflo system, and will not require the installation of LabVIEW.

  16. Development and Evaluation of an Open-Source Software Package “CGITA” for Quantifying Tumor Heterogeneity with Molecular Images

    PubMed Central

    Fang, Yu-Hua Dean; Lin, Chien-Yu; Shih, Meng-Jung; Wang, Hung-Ming; Ho, Tsung-Ying; Liao, Chun-Ta; Yen, Tzu-Chen

    2014-01-01

    Background. The quantification of tumor heterogeneity with molecular images, by analyzing the local or global variation in the spatial arrangements of pixel intensity with texture analysis, possesses a great clinical potential for treatment planning and prognosis. To address the lack of available software for computing the tumor heterogeneity on the public domain, we develop a software package, namely, Chang-Gung Image Texture Analysis (CGITA) toolbox, and provide it to the research community as a free, open-source project. Methods. With a user-friendly graphical interface, CGITA provides users with an easy way to compute more than seventy heterogeneity indices. To test and demonstrate the usefulness of CGITA, we used a small cohort of eighteen locally advanced oral cavity (ORC) cancer patients treated with definitive radiotherapies. Results. In our case study of ORC data, we found that more than ten of the current implemented heterogeneity indices outperformed SUVmean for outcome prediction in the ROC analysis with a higher area under curve (AUC). Heterogeneity indices provide a better area under the curve up to 0.9 than the SUVmean and TLG (0.6 and 0.52, resp.). Conclusions. CGITA is a free and open-source software package to quantify tumor heterogeneity from molecular images. CGITA is available for free for academic use at http://code.google.com/p/cgita. PMID:24757667

  17. Web accessibility and open source software.

    PubMed

    Obrenović, Zeljko

    2009-07-01

    A Web browser provides a uniform user interface to different types of information. Making this interface universally accessible and more interactive is a long-term goal still far from being achieved. Universally accessible browsers require novel interaction modalities and additional functionalities, for which existing browsers tend to provide only partial solutions. Although functionality for Web accessibility can be found as open source and free software components, their reuse and integration is complex because they were developed in diverse implementation environments, following standards and conventions incompatible with the Web. To address these problems, we have started several activities that aim at exploiting the potential of open-source software for Web accessibility. The first of these activities is the development of Adaptable Multi-Interface COmmunicator (AMICO):WEB, an infrastructure that facilitates efficient reuse and integration of open source software components into the Web environment. The main contribution of AMICO:WEB is in enabling the syntactic and semantic interoperability between Web extension mechanisms and a variety of integration mechanisms used by open source and free software components. Its design is based on our experiences in solving practical problems where we have used open source components to improve accessibility of rich media Web applications. The second of our activities involves improving education, where we have used our platform to teach students how to build advanced accessibility solutions from diverse open-source software. We are also partially involved in the recently started Eclipse projects called Accessibility Tools Framework (ACTF), the aim of which is development of extensible infrastructure, upon which developers can build a variety of utilities that help to evaluate and enhance the accessibility of applications and content for people with disabilities. In this article we briefly report on these activities.

  18. Weather forecasting with open source software

    NASA Astrophysics Data System (ADS)

    Rautenhaus, Marc; Dörnbrack, Andreas

    2013-04-01

    To forecast the weather situation during aircraft-based atmospheric field campaigns, we employ a tool chain of existing and self-developed open source software tools and open standards. Of particular value are the Python programming language with its extension libraries NumPy, SciPy, PyQt4, Matplotlib and the basemap toolkit, the NetCDF standard with the Climate and Forecast (CF) Metadata conventions, and the Open Geospatial Consortium Web Map Service standard. These open source libraries and open standards helped to implement the "Mission Support System", a Web Map Service based tool to support weather forecasting and flight planning during field campaigns. The tool has been implemented in Python and has also been released as open source (Rautenhaus et al., Geosci. Model Dev., 5, 55-71, 2012). In this presentation we discuss the usage of free and open source software for weather forecasting in the context of research flight planning, and highlight how the field campaign work benefits from using open source tools and open standards.

  19. Open core control software for surgical robots

    PubMed Central

    Kozuka, Hiroaki; Kim, Hyung Wook; Takesue, Naoyuki; Vladimirov, B.; Sakaguchi, Masamichi; Tokuda, Junichi; Hata, Nobuhiko; Chinzei, Kiyoyuki; Fujimoto, Hideo

    2010-01-01

    Object In these days, patients and doctors in operation room are surrounded by many medical devices as resulting from recent advancement of medical technology. However, these cutting-edge medical devices are working independently and not collaborating with each other, even though the collaborations between these devices such as navigation systems and medical imaging devices are becoming very important for accomplishing complex surgical tasks (such as a tumor removal procedure while checking the tumor location in neurosurgery). On the other hand, several surgical robots have been commercialized, and are becoming common. However, these surgical robots are not open for collaborations with external medical devices in these days. A cutting-edge “intelligent surgical robot” will be possible in collaborating with surgical robots, various kinds of sensors, navigation system and so on. On the other hand, most of the academic software developments for surgical robots are “home-made” in their research institutions and not open to the public. Therefore, open source control software for surgical robots can be beneficial in this field. From these perspectives, we developed Open Core Control software for surgical robots to overcome these challenges. Materials and methods In general, control softwares have hardware dependencies based on actuators, sensors and various kinds of internal devices. Therefore, these control softwares cannot be used on different types of robots without modifications. However, the structure of the Open Core Control software can be reused for various types of robots by abstracting hardware dependent parts. In addition, network connectivity is crucial for collaboration between advanced medical devices. The OpenIGTLink is adopted in Interface class which plays a role to communicate with external medical devices. At the same time, it is essential to maintain the stable operation within the asynchronous data transactions through network. In the Open

  20. Developing open source, self-contained disease surveillance software applications for use in resource-limited settings

    PubMed Central

    2012-01-01

    Background Emerging public health threats often originate in resource-limited countries. In recognition of this fact, the World Health Organization issued revised International Health Regulations in 2005, which call for significantly increased reporting and response capabilities for all signatory nations. Electronic biosurveillance systems can improve the timeliness of public health data collection, aid in the early detection of and response to disease outbreaks, and enhance situational awareness. Methods As components of its Suite for Automated Global bioSurveillance (SAGES) program, The Johns Hopkins University Applied Physics Laboratory developed two open-source, electronic biosurveillance systems for use in resource-limited settings. OpenESSENCE provides web-based data entry, analysis, and reporting. ESSENCE Desktop Edition provides similar capabilities for settings without internet access. Both systems may be configured to collect data using locally available cell phone technologies. Results ESSENCE Desktop Edition has been deployed for two years in the Republic of the Philippines. Local health clinics have rapidly adopted the new technology to provide daily reporting, thus eliminating the two-to-three week data lag of the previous paper-based system. Conclusions OpenESSENCE and ESSENCE Desktop Edition are two open-source software products with the capability of significantly improving disease surveillance in a wide range of resource-limited settings. These products, and other emerging surveillance technologies, can assist resource-limited countries compliance with the revised International Health Regulations. PMID:22950686

  1. Involving Software Engineering Students in Open Source Software Projects: Experiences from a Pilot Study

    ERIC Educational Resources Information Center

    Sowe, Sulayman K.; Stamelos, Ioannis G.

    2007-01-01

    Anecdotal and research evidences show that the Free and Open Source Software (F/OSS) development model has produced a paradigm shift in the way we develop, support, and distribute software. This shift is not only redefining the software industry but also the way we teach and learn in our software engineering (SE) courses. But for many universities…

  2. Free for All: Open Source Software

    ERIC Educational Resources Information Center

    Schneider, Karen

    2008-01-01

    Open source software has become a catchword in libraryland. Yet many remain unclear about open source's benefits--or even what it is. So what is open source software (OSS)? It's software that is free in every sense of the word: free to download, free to use, and free to view or modify. Most OSS is distributed on the Web and one doesn't need to…

  3. Agile Software Development

    ERIC Educational Resources Information Center

    Biju, Soly Mathew

    2008-01-01

    Many software development firms are now adopting the agile software development method. This method involves the customer at every level of software development, thus reducing the impact of change in the requirement at a later stage. In this article, the principles of the agile method for software development are explored and there is a focus on…

  4. Vertical Interaction in Open Software Engineering Communities

    DTIC Science & Technology

    2009-03-01

    Open Source software[6, 77]. 1 CHAPTER 1. INTRODUCTION 1.1 A Brief History of Open Source The roots of Open Source software go back to the dawn of...was going to be open source and what would remain proprietary. On the one hand, Open Sourcing a component could give the business a great competitive...ecosystem by using Open Source. Indeed, as the origins of Eclipse go back to the mid-1990’s such an idea would have been far too radical for the state

  5. Open Source Software Licenses for Livermore National Laboratory

    SciTech Connect

    Busby, L.

    2000-08-10

    This paper attempts to develop supporting material in an effort to provide new options for licensing Laboratory-created software. Where employees and the Lab wish to release software codes as so-called ''Open Source'', they need, at a minimum, new licensing language for their released products. Several open source software licenses are reviewed to understand their common elements, and develop recommendations regarding new language.

  6. Open Source Software and Design-Based Research Symbiosis in Developing 3D Virtual Learning Environments: Examples from the iSocial Project

    ERIC Educational Resources Information Center

    Schmidt, Matthew; Galyen, Krista; Laffey, James; Babiuch, Ryan; Schmidt, Carla

    2014-01-01

    Design-based research (DBR) and open source software are both acknowledged as potentially productive ways for advancing learning technologies. These approaches have practical benefits for the design and development process and for building and leveraging community to augment and sustain design and development. This report presents a case study of…

  7. Development of a web GIS application for emissions inventory spatial allocation based on open source software tools

    NASA Astrophysics Data System (ADS)

    Gkatzoflias, Dimitrios; Mellios, Giorgos; Samaras, Zissis

    2013-03-01

    Combining emission inventory methods and geographic information systems (GIS) remains a key issue for environmental modelling and management purposes. This paper examines the development of a web GIS application as part of an emission inventory system that produces maps and files with spatial allocated emissions in a grid format. The study is not confined in the maps produced but also presents the features and capabilities of a web application that can be used by every user even without any prior knowledge of the GIS field. The development of the application was based on open source software tools such as MapServer for the GIS functions, PostgreSQL and PostGIS for the data management and HTML, PHP and JavaScript as programming languages. In addition, background processes are used in an innovative manner to handle the time consuming and computational costly procedures of the application. Furthermore, a web map service was created to provide maps to other clients such as the Google Maps API v3 that is used as part of the user interface. The output of the application includes maps in vector and raster format, maps with temporal resolution on daily and hourly basis, grid files that can be used by air quality management systems and grid files consistent with the European Monitoring and Evaluation Programme Grid. Although the system was developed and validated for the Republic of Cyprus covering a remarkable wide range of pollutant and emissions sources, it can be easily customized for use in other countries or smaller areas, as long as geospatial and activity data are available.

  8. Opening up Library Automation Software

    ERIC Educational Resources Information Center

    Breeding, Marshall

    2009-01-01

    Throughout the history of library automation, the author has seen a steady advancement toward more open systems. In the early days of library automation, when proprietary systems dominated, the need for standards was paramount since other means of inter-operability and data exchange weren't possible. Today's focus on Application Programming…

  9. On the Prospects and Concerns of Integrating Open Source Software Environment in Software Engineering Education

    ERIC Educational Resources Information Center

    Kamthan, Pankaj

    2007-01-01

    Open Source Software (OSS) has introduced a new dimension in software community. As the development and use of OSS becomes prominent, the question of its integration in education arises. In this paper, the following practices fundamental to projects and processes in software engineering are examined from an OSS perspective: project management;…

  10. Software Model Of Software-Development Process

    NASA Technical Reports Server (NTRS)

    Lin, Chi Y.; Synott, Debra J.; Levary, Reuven R.

    1990-01-01

    Collection of computer programs constitutes software tool for simulation of medium- to large-scale software-development projects. Necessary to include easily identifiable and more-readily quantifiable characteristics like costs, times, and numbers of errors. Mathematical model incorporating these and other factors of dynamics of software-development process implemented in the Software Life Cycle Simulator (SLICS) computer program. Simulates dynamics of software-development process. In combination with input and output expert software systems and knowledge-based management software system, develops information for use in managing large software-development project. Intended to aid managers in planning, managing, and controlling software-development processes by reducing uncertainties in budgets, required personnel, and schedules.

  11. Development of a novel CASA system based on open source software for characterization of zebrafish sperm motility parameters.

    PubMed

    Wilson-Leedy, Jonas G; Ingermann, Rolf L

    2007-02-01

    Although computer-assisted sperm analysis (CASA) outperforms manual techniques, many investigators rely on non-automated analysis due to the high cost of commercial options. In this study, we have written and validated a free CASA software primarily for analysis of fish sperm. This software is a plugin for the free National Institutes of Health software ImageJ and is available with documentation at . That it is open source makes possible external validation, should improve quality control and enhance the comparative value of data obtained among laboratories. In addition, we have improved upon the traditional velocity straight line (VSL) algorithm, eliminating inaccurate characterization of highly curved fish sperm paths. Using this system, the motion of zebrafish (Danio rerio) sperm was characterized relative to time post-activation and the impact of acquisition conditions upon data analysis determined. There were decreases in velocity and path straightness (STR), but not linearity (LIN), relative to time. From 30 to 300 frames/s, frame rate significantly affected curvilinear velocity (VCL) and STR measurements. Sperm density in the field of view did not affect any measured parameter. There was significant inter-male variation for VCL, VSL, velocity average path (VAP), percent motility, path character (STR, LIN), and duration of motility. Furthermore, relative sperm output (a measure reflecting both semen volume and concentration) was positively correlated to percent motility. For all motion parameters measured (except duration), the average CV was < or =10%, comparable to values obtained using commercial systems.

  12. Funding Research Software Development

    NASA Astrophysics Data System (ADS)

    Momcheva, Ivelina G.

    2017-01-01

    Astronomical software is used by each and every member of our scientific community. Purpose-build software is becoming ever more critical as we enter the regime of large datasets and simulations of increasing complexity. However, financial investments in building, maintaining and renovating the software infrastructure have been uneven. In this talk I will summarize past and current funding sources for astronomical software development, discuss other models of funding and introduce a new initiative for supporting community software at STScI. The purpose of this talk is to prompt discussion about how we allocate resources to this vital infrastructure.

  13. Cleanroom software development

    NASA Technical Reports Server (NTRS)

    Dyer, M.; Mills, H. D.

    1981-01-01

    The 'cleanroom' software development process is a technical and organizational approach to developing software with certifiable reliability. Key ideas behind the process are well structured software specifications, randomized testing methods and the introduction of statistical controls; but the main point is to deny entry for defects during the development of software. This latter point suggests the use of the term 'cleanroom' in analogy to the defect prevention controls used in the manufacturing of high technology hardware. In the 'cleanroom', the entire software development process is embedded within a formal statistical design, in contrast to executing selected tests and appealing to the randomness of operational settings for drawing statistical inferences. Instead, random testing is introduced as a part of the statistical design itself so that when development and testing are completed, statistical inferences are made about the operation of the system.

  14. The case for open-source software in drug discovery.

    PubMed

    DeLano, Warren L

    2005-02-01

    Widespread adoption of open-source software for network infrastructure, web servers, code development, and operating systems leads one to ask how far it can go. Will "open source" spread broadly, or will it be restricted to niches frequented by hopeful hobbyists and midnight hackers? Here we identify reasons for the success of open-source software and predict how consumers in drug discovery will benefit from new open-source products that address their needs with increased flexibility and in ways complementary to proprietary options.

  15. Open Source Software For Patient Data Management In Critical Care.

    PubMed

    Massaut, Jacques; Charretk, Nicolas; Gayraud, Olivia; Van Den Bergh, Rafael; Charles, Adelin; Edema, Nathalie

    2015-01-01

    We have previously developed a Patient Data Management System for Intensive Care based on Open Source Software. The aim of this work was to adapt this software to use in Emergency Departments in low resource environments. The new software includes facilities for utilization of the South African Triage Scale and prediction of mortality based on independent predictive factors derived from data from the Tabarre Emergency Trauma Center in Port au Prince, Haiti.

  16. UWB Tracking Software Development

    NASA Technical Reports Server (NTRS)

    Gross, Julia; Arndt, Dickey; Ngo, Phong; Phan, Chau; Dusl, John; Ni, Jianjun; Rafford, Melinda

    2006-01-01

    An Ultra-Wideband (UWB) two-cluster Angle of Arrival (AOA) tracking prototype system is currently being developed and tested at NASA Johnson Space Center for space exploration applications. This talk discusses the software development efforts for this UWB two-cluster AOA tracking system. The role the software plays in this system is to take waveform data from two UWB radio receivers as an input, feed this input into an AOA tracking algorithm, and generate the target position as an output. The architecture of the software (Input/Output Interface and Algorithm Core) will be introduced in this talk. The development of this software has three phases. In Phase I, the software is mostly Matlab driven and calls C++ socket functions to provide the communication links to the radios. This is beneficial in the early stage when it is necessary to frequently test changes in the algorithm. Phase II of the development is to have the software mostly C++ driven and call a Matlab function for the AOA tracking algorithm. This is beneficial in order to send the tracking results to other systems and also to improve the tracking update rate of the system. The third phase is part of future work and is to have the software completely C++ driven with a graphics user interface. This software design enables the fine resolution tracking of the UWB two-cluster AOA tracking system.

  17. Understanding the Requirements for Open Source Software

    DTIC Science & Technology

    2009-06-17

    fields like astrophysics that critically depend on software, open source is considered an essential precondition for research to proceed, and for...contributors or participants, new ideas, new career opportunities, and new research publications. 4.4. Condensing Discourse that Hardens and

  18. Software Training Classes Now Open | Poster

    Cancer.gov

    By Nancy Parrish, Staff Writer                                            Data Management Services, Inc. (DMS), has announced the opening of its spring session of software training classes, available to all employees at NCI at Frederick. Classes begin on March 31 and run through June 30.

  19. An Evaluation Format for "Open" Software Tools.

    ERIC Educational Resources Information Center

    Murphy, Cheryl A.

    1995-01-01

    Evaluates six "open" (empty of content and customized by users) software programs using the literature-based characteristics of documentation, learner control, branching capabilities, portability, ease of use, and cost-effectiveness. Interviewed computer-knowledgeable individuals to confirm the legitimacy of the evaluative characteristics. (LRW)

  20. Implementing Rakim: Open Source Chat Reference Software

    ERIC Educational Resources Information Center

    Caraway, Shawn; Payne, Susan

    2005-01-01

    This article describes the conception, implementation, and current status of Rakim open source software at Midlands Technical college in Columbia, SC. Midlands Technical College (MTC) is a 2-year school in Columbia, S.C. It has two large campuses and three smaller campuses. Although the library functions as a single unit, there are separate…

  1. Space Flight Software Development Software for Intelligent System Health Management

    NASA Technical Reports Server (NTRS)

    Trevino, Luis C.; Crumbley, Tim

    2004-01-01

    The slide presentation examines the Marshall Space Flight Center Flight Software Branch, including software development projects, mission critical space flight software development, software technical insight, advanced software development technologies, and continuous improvement in the software development processes and methods.

  2. Software Development Program.

    ERIC Educational Resources Information Center

    Collin County Community Coll., McKinney, TX.

    The Software Development Program described in this report was developed at Collin County Community College as a pilot associate degree program for the State of Texas. Drawing from an employer needs assessment and a DACUM (Developing a Curriculum) process, the two-year associate in applied science (AAS) program was developed to train scientific…

  3. Investigating the Acquisition of Software Systems that Rely on Open Architecture and Open Source Software

    DTIC Science & Technology

    2010-03-01

    Investigating the Acquisition of Software Systems that Rely on Open Architecture and Open Source Software March 2010 by Dr. Walt Scacchi ...including project teams operating as virtual organizations [ Scacchi 2002, 2007]. There is a basic need to understand how to identify an optimal mix of OSS...ecosystem. However, the relationship among OA, OSS, requirements, and acquisition is poorly understood [cf. Scacchi 2002, Naegle and Petross 2007

  4. A Requirements-Based Exploration of Open-Source Software Development Projects--Towards a Natural Language Processing Software Analysis Framework

    ERIC Educational Resources Information Center

    Vlas, Radu Eduard

    2012-01-01

    Open source projects do have requirements; they are, however, mostly informal, text descriptions found in requests, forums, and other correspondence. Understanding such requirements provides insight into the nature of open source projects. Unfortunately, manual analysis of natural language requirements is time-consuming, and for large projects,…

  5. NASA's Open Source Software for Serving and Viewing Global Imagery

    NASA Astrophysics Data System (ADS)

    Roberts, J. T.; Alarcon, C.; Boller, R. A.; Cechini, M. F.; Gunnoe, T.; Hall, J. R.; Huang, T.; Ilavajhala, S.; King, J.; McGann, M.; Murphy, K. J.; Plesea, L.; Schmaltz, J. E.; Thompson, C. K.

    2014-12-01

    The NASA Global Imagery Browse Services (GIBS), which provide open access to an enormous archive of historical and near real time imagery from NASA supported satellite instruments, has also released most of its software to the general public as open source. The software packages, originally developed at the Jet Propulsion Laboratory and Goddard Space Flight Center, currently include: 1) the Meta Raster Format (MRF) GDAL driver—GDAL support for a specialized file format used by GIBS to store imagery within a georeferenced tile pyramid for exceptionally fast access; 2) OnEarth—a high performance Apache module used to serve tiles from MRF files via common web service protocols; 3) Worldview—a web mapping client to interactively browse global, full-resolution satellite imagery and download underlying data. Examples that show developers how to use GIBS with various mapping libraries and programs are also available. This stack of tools is intended to provide an out-of-the-box solution for serving any georeferenced imagery.Scientists as well as the general public can use the open source software for their own applications such as developing visualization interfaces for improved scientific understanding and decision support, hosting a repository of browse images to help find and discover satellite data, or accessing large datasets of geo-located imagery in an efficient manner. Open source users may also contribute back to NASA and the wider Earth Science community by taking an active role in evaluating and developing the software.This presentation will discuss the experiences of developing the software in an open source environment and useful lessons learned. To access the open source software repositories, please visit: https://github.com/nasa-gibs/

  6. Payload software technology: Software technology development plan

    NASA Technical Reports Server (NTRS)

    1977-01-01

    Programmatic requirements for the advancement of software technology are identified for meeting the space flight requirements in the 1980 to 1990 time period. The development items are described, and software technology item derivation worksheets are presented along with the cost/time/priority assessments.

  7. Astronomers as Software Developers

    NASA Astrophysics Data System (ADS)

    Pildis, Rachel A.

    2016-01-01

    Astronomers know that their research requires writing, adapting, and documenting computer software. Furthermore, they often have to learn new computer languages and figure out how existing programs work without much documentation or guidance and with extreme time pressure. These are all skills that can lead to a software development job, but recruiters and employers probably won't know that. I will discuss all the highly useful experience that astronomers may not know that they already have, and how to explain that knowledge to others when looking for non-academic software positions. I will also talk about some of the pitfalls I have run into while interviewing for jobs and working as a developer, and encourage you to embrace the curiosity employers might have about your non-standard background.

  8. Open-Source Software in Computational Research: A Case Study

    DOE PAGES

    Syamlal, Madhava; O'Brien, Thomas J.; Benyahia, Sofiane; ...

    2008-01-01

    A case study of open-source (OS) development of the computational research software MFIX, used for multiphase computational fluid dynamics simulations, is presented here. The verification and validation steps required for constructing modern computational software and the advantages of OS development in those steps are discussed. The infrastructure used for enabling the OS development of MFIX is described. The impact of OS development on computational research and education in gas-solids flow, as well as the dissemination of information to other areas such as geophysical and volcanology research, is demonstrated. This study shows that the advantages of OS development were realized inmore » the case of MFIX: verification by many users, which enhances software quality; the use of software as a means for accumulating and exchanging information; the facilitation of peer review of the results of computational research.« less

  9. Trends and challenges in open source software (Presentation Video)

    NASA Astrophysics Data System (ADS)

    Aylward, Stephen

    2013-10-01

    Over the past decade, the field of medical image analysis research has undergone a rapid evolution. It was a collection of disconnected efforts that were burdened by mundane coding and file I/O tasks. It is now a collaborative community that has embraced open-source software as a shared foundation, reducing mundane coding and I/O burdens, promoting replicable research, and accelerating the pace of research and product development. This talk will review the history and current state of open-source software in medical image analysis research, will discuss the role of intellectual property in research, and will present emerging trends and technologies relevant to the growing importance of open-source software.

  10. OpenROCS: a software tool to control robotic observatories

    NASA Astrophysics Data System (ADS)

    Colomé, Josep; Sanz, Josep; Vilardell, Francesc; Ribas, Ignasi; Gil, Pere

    2012-09-01

    We present the Open Robotic Observatory Control System (OpenROCS), an open source software platform developed for the robotic control of telescopes. It acts as a software infrastructure that executes all the necessary processes to implement responses to the system events that appear in the routine and non-routine operations associated to data-flow and housekeeping control. The OpenROCS software design and implementation provides a high flexibility to be adapted to different observatory configurations and event-action specifications. It is based on an abstract model that is independent of the specific hardware or software and is highly configurable. Interfaces to the system components are defined in a simple manner to achieve this goal. We give a detailed description of the version 2.0 of this software, based on a modular architecture developed in PHP and XML configuration files, and using standard communication protocols to interface with applications for hardware monitoring and control, environment monitoring, scheduling of tasks, image processing and data quality control. We provide two examples of how it is used as the core element of the control system in two robotic observatories: the Joan Oró Telescope at the Montsec Astronomical Observatory (Catalonia, Spain) and the SuperWASP Qatar Telescope at the Roque de los Muchachos Observatory (Canary Islands, Spain).

  11. OpenMS and TOPP: open source software for LC-MS data analysis.

    PubMed

    Reinert, Knut; Kohlbacher, Oliver

    2010-01-01

    The automatic analysis of mass spectrometry data is becoming more and more important since increasingly larger datasets are readily available that cannot be evaluated manually. This has triggered the development of several open-source software libraries for the automatic analysis of such data. Among those is OpenMS together with TOPP (The OpenMS Proteomics Pipeline). OpenMS is a C++ library for rapid prototyping of complex algorithms for the analysis of mass spectrometry data. Based on the OpenMS library, TOPP provides a collection of tools for the most important tasks in proteomics analysis. The tight coupling of OpenMS and TOPP makes it easy to extend TOPP by adding new tools to the OpenMS library. We describe the overall concepts behind the software and illustrate its use with several examples.

  12. [Osirix: free and open-source software for medical imagery].

    PubMed

    Jalbert, F; Paoli, J R

    2008-02-01

    Osirix is a tool for diagnostic imagery, teaching and research tasks, which presents many possible applications in maxillofacial and oral surgery. It is a free and open-source software developed on Mac OS X (Apple) by Dr Antoine Rosset and Dr Osman Ratib, in the department of radiology and medical computing of Geneva (Switzerland).

  13. Algorithms for Software Development

    NASA Technical Reports Server (NTRS)

    Tausworthe, R. C.

    1985-01-01

    Management aid makes changes obvious. One key element in scheme for software development control is check summing. If check sum for given line in source file is different from previous version, it is evident change has been made. Subsequent editing of file creates new lines, deletes old ones, modifies characters, moves lines, or copies (reuse) existing lines. Combination of three elements of line code permits all transactions to be detected.

  14. Open source software engineering for geoscientific modeling applications

    NASA Astrophysics Data System (ADS)

    Bilke, L.; Rink, K.; Fischer, T.; Kolditz, O.

    2012-12-01

    OpenGeoSys (OGS) is a scientific open source project for numerical simulation of thermo-hydro-mechanical-chemical (THMC) processes in porous and fractured media. The OGS software development community is distributed all over the world and people with different backgrounds are contributing code to a complex software system. The following points have to be addressed for successful software development: - Platform independent code - A unified build system - A version control system - A collaborative project web site - Continuous builds and testing - Providing binaries and documentation for end users OGS should run on a PC as well as on a computing cluster regardless of the operating system. Therefore the code should not include any platform specific feature or library. Instead open source and platform independent libraries like Qt for the graphical user interface or VTK for visualization algorithms are used. A source code management and version control system is a definite requirement for distributed software development. For this purpose Git is used, which enables developers to work on separate versions (branches) of the software and to merge those versions at some point to the official one. The version control system is integrated into an information and collaboration website based on a wiki system. The wiki is used for collecting information such as tutorials, application examples and case studies. Discussions take place in the OGS mailing list. To improve code stability and to verify code correctness a continuous build and testing system, based on the Jenkins Continuous Integration Server, has been established. This server is connected to the version control system and does the following on every code change: - Compiles (builds) the code on every supported platform (Linux, Windows, MacOS) - Runs a comprehensive test suite of over 120 benchmarks and verifies the results Runs software development related metrics on the code (like compiler warnings, code complexity

  15. Government Technology Acquisition Policy: The Case of Proprietary versus Open Source Software

    ERIC Educational Resources Information Center

    Hemphill, Thomas A.

    2005-01-01

    This article begins by explaining the concepts of proprietary and open source software technology, which are now competing in the marketplace. A review of recent individual and cooperative technology development and public policy advocacy efforts, by both proponents of open source software and advocates of proprietary software, subsequently…

  16. Expanding Human Capabilities through the Adoption and Utilization of Free, Libre, and Open Source Software

    ERIC Educational Resources Information Center

    Simpson, James Daniel

    2014-01-01

    Free, libre, and open source software (FLOSS) is software that is collaboratively developed. FLOSS provides end-users with the source code and the freedom to adapt or modify a piece of software to fit their needs (Deek & McHugh, 2008; Stallman, 2010). FLOSS has a 30 year history that dates to the open hacker community at the Massachusetts…

  17. Software Development Life Cycle Security Issues

    NASA Astrophysics Data System (ADS)

    Kaur, Daljit; Kaur, Parminder

    2011-12-01

    Security is now-a-days one of the major problems because of many reasons. Security is now-a-days one of the major problems because of many reasons. The main cause is that software can't withstand security attacks because of vulnerabilities in it which are caused by defective specifications design and implementation. We have conducted a survey asking software developers, project managers and other people in software development about their security awareness and implementation in Software Development Life Cycle (SDLC). The survey was open to participation for three weeks and this paper explains the survey results.

  18. Open architecture software platform for biomedical signal analysis.

    PubMed

    Duque, Juliano J; Silva, Luiz E V; Murta, Luiz O

    2013-01-01

    Biomedical signals are very important reporters of the physiological status in human body. Therefore, great attention is devoted to the study of analysis methods that help extracting the greatest amount of relevant information from these signals. There are several free of charge softwares which can process biomedical data, but they are usually closed architecture, not allowing addition of new functionalities by users. This paper presents a proposal for free open architecture software platform for biomedical signal analysis, named JBioS. Implemented in Java, the platform offers some basic functionalities to load and display signals, and allows the integration of new software components through plugins. JBioS facilitates validation of new analysis methods and provides an environment for multi-methods analysis. Plugins can be developed for preprocessing, analyzing and simulating signals. Some applications have been done using this platform, suggesting that, with these features, JBioS presents itself as a software with potential applications in both research and clinical area.

  19. IT Policies for Development: Analysis and Recommendations of Free Libre Open Source Software Initiatives of the Bolivarian Republic of Venezuela

    ERIC Educational Resources Information Center

    Maldonado Rangel, Edgar A.

    2009-01-01

    In recent years the two concepts of economic development and technological advancement have become entwined so that they have, in many cases, come to mean the same thing. For countries seeking economic development through engagement with the Information Economy, policies supporting technological development claim privileged positions in national…

  20. An Analysis of Open Source Security Software Products Downloads

    ERIC Educational Resources Information Center

    Barta, Brian J.

    2014-01-01

    Despite the continued demand for open source security software, a gap in the identification of success factors related to the success of open source security software persists. There are no studies that accurately assess the extent of this persistent gap, particularly with respect to the strength of the relationships of open source software…

  1. Software developments for gammasphere

    SciTech Connect

    Lauritsen, T.; Ahmad, I.; Carpenter, M.P.

    1995-08-01

    This year marked the year when data acquisition development for Gammasphere evolved from planning to accomplishment, both in hardware and software. Two VME crates now contain about 10 crate-processors which are used to handle the data from VXI processors - which in turn collect the data from germanium and BGO detectors in the array. The signals from the detectors are processed and digitized in custom-built electronics boards. The processing power in the VME crates is used to digitally filter the data before they are written to tape. The goal is to have highly processed data flowing to tape, eliminating the off-line filtering and manipulation of data that was standard procedure in earlier experiments.

  2. Alone Together: A Socio-Technical Theory of Motivation, Coordination and Collaboration Technologies in Organizing for Free and Open Source Software Development

    ERIC Educational Resources Information Center

    Howison, James

    2009-01-01

    This dissertation presents evidence that the production of Free and Open Source Software (FLOSS) is far more alone than together; it is far more often individual work done "in company" than it is teamwork. When tasks appear too large for an individual they are more likely to be deferred until they are easier rather than be undertaken through…

  3. Management of Astronomical Software Projects with Open Source Tools

    NASA Astrophysics Data System (ADS)

    Briegel, F.; Bertram, T.; Berwein, J.; Kittmann, F.

    2010-12-01

    In this paper we will offer an innovative approach to managing the software development process with free open source tools, for building and automated testing, a system to automate the compile/test cycle on a variety of platforms to validate code changes, using virtualization to compile in parallel on various operating system platforms, version control and change management, enhanced wiki and issue tracking system for online documentation and reporting and groupware tools as they are: blog, discussion and calendar. Initially starting with the Linc-Nirvana instrument a new project and configuration management tool for developing astronomical software was looked for. After evaluation of various systems of this kind, we are satisfied with the selection we are using now. Following the lead of Linc-Nirvana most of the other software projects at the MPIA are using it now.

  4. Models for Deploying Open Source and Commercial Software to Support Earth Science Data Processing and Distribution

    NASA Astrophysics Data System (ADS)

    Yetman, G.; Downs, R. R.

    2011-12-01

    Software deployment is needed to process and distribute scientific data throughout the data lifecycle. Developing software in-house can take software development teams away from other software development projects and can require efforts to maintain the software over time. Adopting and reusing software and system modules that have been previously developed by others can reduce in-house software development and maintenance costs and can contribute to the quality of the system being developed. A variety of models are available for reusing and deploying software and systems that have been developed by others. These deployment models include open source software, vendor-supported open source software, commercial software, and combinations of these approaches. Deployment in Earth science data processing and distribution has demonstrated the advantages and drawbacks of each model. Deploying open source software offers advantages for developing and maintaining scientific data processing systems and applications. By joining an open source community that is developing a particular system module or application, a scientific data processing team can contribute to aspects of the software development without having to commit to developing the software alone. Communities of interested developers can share the work while focusing on activities that utilize in-house expertise and addresses internal requirements. Maintenance is also shared by members of the community. Deploying vendor-supported open source software offers similar advantages to open source software. However, by procuring the services of a vendor, the in-house team can rely on the vendor to provide, install, and maintain the software over time. Vendor-supported open source software may be ideal for teams that recognize the value of an open source software component or application and would like to contribute to the effort, but do not have the time or expertise to contribute extensively. Vendor-supported software may

  5. Gammasphere software development. Progress report

    SciTech Connect

    Piercey, R.B.

    1994-01-01

    This report describes the activities of the nuclear physics group at Mississippi State University which were performed during 1993. Significant progress has been made in the focus areas: chairing the Gammasphere Software Working Group (SWG); assisting with the porting and enhancement of the ORNL UPAK histogramming software package; and developing standard formats for Gammasphere data products. In addition, they have established a new public ftp archive to distribute software and software development tools and information.

  6. Documentation Driven Software Development

    DTIC Science & Technology

    2010-06-01

    reliability standards, ease of reconfigurability, and interoperability with other systems. The key challenges encountered during design of complex...software life cycles. The challenge here is to ensure proper transformation of project requirements, which may be specified informally, into the formal...software is becoming a more challenging task— often resulting in unexpected safety risks, schedule delays, and cost overruns. This research is

  7. Survivability as a Tool for Evaluating Open Source Software

    DTIC Science & Technology

    2015-06-01

    mistaken to mean “ free ” software . It may be true in some instances that open source software is offered free -of-charge, but there are other instances...upgrades, and maintenance [11]. Cost is always a big driver of software selection, and it should be considered even when using OSS acquired free of charge...source projects during their free time, and may build software because the commercial-off-the-shelf (COTS) software already in existence does not offer

  8. Achieving Better Buying Power through Acquisition of Open Architecture Software Systems: Volume 1

    DTIC Science & Technology

    2016-01-06

    2009. [Sca10] Scacchi, W. (2010). The Future of Research in Free /Open Source Software Development, Proc. ACM Workshop Future of Software Engineering...SPONSORED REPORT SERIES Achieving Better Buying Power through Acquisition of Open Architecture Software Systems Volume I 6 January 2016 Dr. Walt...Scacchi Dr. Thomas A. Alspaugh Institute for Software Research University University of California, Irvine Approved for public release; distribution is

  9. OpenEIS. Developer Guide

    SciTech Connect

    Lutes, Robert G.; Neubauer, Casey C.; Haack, Jereme N.; Carpenter, Brandon J.; Monson, Kyle E.; Allwardt, Craig H.; Sharma, Poorva; Akyol, Bora A.

    2015-03-31

    The Department of Energy’s (DOE’s) Building Technologies Office (BTO) is supporting the development of an open-source software tool for analyzing building energy and operational data: OpenEIS (open energy information system). This tool addresses the problems of both owners of building data and developers of tools to analyze this data. Building owners and managers have data but lack the tools to analyze it while tool developers lack data in a common format to ease development of reusable data analysis tools. This document is intended for developers of applications and explains the mechanisms for building analysis applications, accessing data, and displaying data using a visualization from the included library. A brief introduction to the visualizations can be used as a jumping off point for developers familiar with JavaScript to produce their own. Several example applications are included which can be used along with this document to implement algorithms for performing energy data analysis.

  10. Agile Methods for Open Source Safety-Critical Software

    PubMed Central

    Enquobahrie, Andinet; Ibanez, Luis; Cheng, Patrick; Yaniv, Ziv; Cleary, Kevin; Kokoori, Shylaja; Muffih, Benjamin; Heidenreich, John

    2011-01-01

    The introduction of software technology in a life-dependent environment requires the development team to execute a process that ensures a high level of software reliability and correctness. Despite their popularity, agile methods are generally assumed to be inappropriate as a process family in these environments due to their lack of emphasis on documentation, traceability, and other formal techniques. Agile methods, notably Scrum, favor empirical process control, or small constant adjustments in a tight feedback loop. This paper challenges the assumption that agile methods are inappropriate for safety-critical software development. Agile methods are flexible enough to encourage the right amount of ceremony; therefore if safety-critical systems require greater emphasis on activities like formal specification and requirements management, then an agile process will include these as necessary activities. Furthermore, agile methods focus more on continuous process management and code-level quality than classic software engineering process models. We present our experiences on the image-guided surgical toolkit (IGSTK) project as a backdrop. IGSTK is an open source software project employing agile practices since 2004. We started with the assumption that a lighter process is better, focused on evolving code, and only adding process elements as the need arose. IGSTK has been adopted by teaching hospitals and research labs, and used for clinical trials. Agile methods have matured since the academic community suggested they are not suitable for safety-critical systems almost a decade ago, we present our experiences as a case study for renewing the discussion. PMID:21799545

  11. Agile Methods for Open Source Safety-Critical Software.

    PubMed

    Gary, Kevin; Enquobahrie, Andinet; Ibanez, Luis; Cheng, Patrick; Yaniv, Ziv; Cleary, Kevin; Kokoori, Shylaja; Muffih, Benjamin; Heidenreich, John

    2011-08-01

    The introduction of software technology in a life-dependent environment requires the development team to execute a process that ensures a high level of software reliability and correctness. Despite their popularity, agile methods are generally assumed to be inappropriate as a process family in these environments due to their lack of emphasis on documentation, traceability, and other formal techniques. Agile methods, notably Scrum, favor empirical process control, or small constant adjustments in a tight feedback loop. This paper challenges the assumption that agile methods are inappropriate for safety-critical software development. Agile methods are flexible enough to encourage the rightamount of ceremony; therefore if safety-critical systems require greater emphasis on activities like formal specification and requirements management, then an agile process will include these as necessary activities. Furthermore, agile methods focus more on continuous process management and code-level quality than classic software engineering process models. We present our experiences on the image-guided surgical toolkit (IGSTK) project as a backdrop. IGSTK is an open source software project employing agile practices since 2004. We started with the assumption that a lighter process is better, focused on evolving code, and only adding process elements as the need arose. IGSTK has been adopted by teaching hospitals and research labs, and used for clinical trials. Agile methods have matured since the academic community suggested they are not suitable for safety-critical systems almost a decade ago, we present our experiences as a case study for renewing the discussion.

  12. OpenFLUID: an open-source software environment for modelling fluxes in landscapes

    NASA Astrophysics Data System (ADS)

    Fabre, Jean-Christophe; Rabotin, Michaël; Crevoisier, David; Libres, Aline; Dagès, Cécile; Moussa, Roger; Lagacherie, Philippe; Raclot, Damien; Voltz, Marc

    2013-04-01

    Integrative landscape functioning has become a common concept in environmental management. Landscapes are complex systems where many processes interact in time and space. In agro-ecosystems, these processes are mainly physical processes, including hydrological-processes, biological processes and human activities. Modelling such systems requires an interdisciplinary approach, coupling models coming from different disciplines, developed by different teams. In order to support collaborative works, involving many models coupled in time and space for integrative simulations, an open software modelling platform is a relevant answer. OpenFLUID is an open source software platform for modelling landscape functioning, mainly focused on spatial fluxes. It provides an advanced object-oriented architecture allowing to i) couple models developed de novo or from existing source code, and which are dynamically plugged to the platform, ii) represent landscapes as hierarchical graphs, taking into account multi-scale, spatial heterogeneities and landscape objects connectivity, iii) run and explore simulations in many ways : using the OpenFLUID software interfaces for users (command line interface, graphical user interface), or using external applications such as GNU R through the provided ROpenFLUID package. OpenFLUID is developed in C++ and relies on open source libraries only (Boost, libXML2, GLib/GTK, OGR/GDAL, …). For modelers and developers, OpenFLUID provides a dedicated environment for model development, which is based on an open source toolchain, including the Eclipse editor, the GCC compiler and the CMake build system. OpenFLUID is distributed under the GPLv3 open source license, with a special exception allowing to plug existing models licensed under any license. It is clearly in the spirit of sharing knowledge and favouring collaboration in a community of modelers. OpenFLUID has been involved in many research applications, such as modelling of hydrological network

  13. The Value of Open Source Software Tools in Qualitative Research

    ERIC Educational Resources Information Center

    Greenberg, Gary

    2011-01-01

    In an era of global networks, researchers using qualitative methods must consider the impact of any software they use on the sharing of data and findings. In this essay, I identify researchers' main areas of concern regarding the use of qualitative software packages for research. I then examine how open source software tools, wherein the publisher…

  14. Understanding How the "Open" of Open Source Software (OSS) Will Improve Global Health Security.

    PubMed

    Hahn, Erin; Blazes, David; Lewis, Sheri

    2016-01-01

    Improving global health security will require bold action in all corners of the world, particularly in developing settings, where poverty often contributes to an increase in emerging infectious diseases. In order to mitigate the impact of emerging pandemic threats, enhanced disease surveillance is needed to improve early detection and rapid response to outbreaks. However, the technology to facilitate this surveillance is often unattainable because of high costs, software and hardware maintenance needs, limited technical competence among public health officials, and internet connectivity challenges experienced in the field. One potential solution is to leverage open source software, a concept that is unfortunately often misunderstood. This article describes the principles and characteristics of open source software and how it may be applied to solve global health security challenges.

  15. Development methodology for scientific software

    SciTech Connect

    Cort, G.; Goldstone, J.A.; Nelson, R.O.; Poore, R.V.; Miller, L.; Barrus, D.M.

    1985-01-01

    We present the details of a software development methodology that addresses all phases of the software life cycle, yet is well suited for application by small projects with limited resources. The methodology has been developed at the Los Alamos Weapons Neutron Research (WNR) Facility and was utilized during the recent development of the WNR Data Acquisition Command Language. The methodology emphasizes the development and maintenance of comprehensive documentation for all software components. The impact of the methodology upon software quality and programmer productivity is assessed.

  16. Managers Handbook for Software Development

    NASA Technical Reports Server (NTRS)

    Agresti, W.; Mcgarry, F.; Card, D.; Page, J.; Church, V.; Werking, R.

    1984-01-01

    Methods and aids for the management of software development projects are presented. The recommendations are based on analyses and experiences with flight dynamics software development. The management aspects of organizing the project, producing a development plan, estimation costs, scheduling, staffing, preparing deliverable documents, using management tools, monitoring the project, conducting reviews, auditing, testing, and certifying are described.

  17. Transforming High School Classrooms with Free/Open Source Software: "It's Time for an Open Source Software Revolution"

    ERIC Educational Resources Information Center

    Pfaffman, Jay

    2008-01-01

    Free/Open Source Software (FOSS) applications meet many of the software needs of high school science classrooms. In spite of the availability and quality of FOSS tools, they remain unknown to many teachers and utilized by fewer still. In a world where most software has restrictions on copying and use, FOSS is an anomaly, free to use and to…

  18. Managing the Software Development Process

    NASA Technical Reports Server (NTRS)

    Lubelczky, Jeffrey T.; Parra, Amy

    1999-01-01

    The goal of any software development project is to produce a product that is delivered on time, within the allocated budget, and with the capabilities expected by the customer and unfortunately, this goal is rarely achieved. However, a properly managed project in a mature software engineering environment can consistently achieve this goal. In this paper we provide an introduction to three project success factors, a properly managed project, a competent project manager, and a mature software engineering environment. We will also present an overview of the benefits of a mature software engineering environment based on 24 years of data from the Software Engineering Lab, and suggest some first steps that an organization can take to begin benefiting from this environment. The depth and breadth of software engineering exceeds this paper, various references are cited with a goal of raising awareness and encouraging further investigation into software engineering and project management practices.

  19. Open Source Software in Medium Size Organizations: Key Factors for Adoption

    ERIC Educational Resources Information Center

    Solomon, Jerry T.

    2010-01-01

    For-profit organizations are constantly evaluating new technologies to gain competitive advantage. One such technology, application software, has changed significantly over the past 25 years with the introduction of Open Source Software (OSS). In contrast to commercial software that is developed by private companies and sold to organizations, OSS…

  20. Open source IPSEC software in manned and unmanned space missions

    NASA Astrophysics Data System (ADS)

    Edwards, Jacob

    Network security is a major topic of research because cyber attackers pose a threat to national security. Securing ground-space communications for NASA missions is important because attackers could endanger mission success and human lives. This thesis describes how an open source IPsec software package was used to create a secure and reliable channel for ground-space communications. A cost efficient, reproducible hardware testbed was also created to simulate ground-space communications. The testbed enables simulation of low-bandwidth and high latency communications links to experiment how the open source IPsec software reacts to these network constraints. Test cases were built that allowed for validation of the testbed and the open source IPsec software. The test cases also simulate using an IPsec connection from mission control ground routers to points of interest in outer space. Tested open source IPsec software did not meet all the requirements. Software changes were suggested to meet requirements.

  1. Designing Software to Shape Open Government Policy

    ERIC Educational Resources Information Center

    Yu, Harlan Ming-Tun

    2012-01-01

    Modern information technologies have transformed the meaning and promise of "open government." The term originally stood for the ideas of government transparency and public accountability. But with the rise of the Internet, "open government" has grown to encompass a wide range of civic goals--greater public participation and…

  2. Open-source software for radiologists: a primer.

    PubMed

    Scarsbrook, A F

    2007-02-01

    There is a wide variety of free (open-source) software available via the Internet which may be of interest to radiologists. This article will explore the use of open-source software in radiology to help streamline academic workflow and improve general efficiency and effectiveness by highlighting a number of the most useful applications currently available. These include really simple syndication applications, e-mail management, spreadsheet, word processing, database and presentation packages, as well as image and video editing software. How to incorporate this software into radiological practice will also be discussed.

  3. Software Development Cost Estimating Handbook

    DTIC Science & Technology

    2009-04-21

    Hill AFB, UT Researching Blueprinting Technical writing I t l i i / ditin erna rev ew ng e ng Naval Center for Cost Analysis (NCCA), Arlington, VA...development processes Software estimating models Defense Acquisition Framework Data collection Acronyms T i lerm no ogy References Systems & Software...Designed for readability and comprehension Large right margin for notes Systems & Software Technology Conference 921 April 2009 Part I - Basics

  4. Evaluation of Open-Source Hard Real Time Software Packages

    NASA Technical Reports Server (NTRS)

    Mattei, Nicholas S.

    2004-01-01

    replacing this somewhat costly implementation is the focus of one of the SA group s current research projects. The explosion of open source software in the last ten years has led to the development of a multitude of software solutions which were once only produced by major corporations. The benefits of these open projects include faster release and bug patching cycles as well as inexpensive if not free software solutions. The main packages for hard real time solutions under Linux are Real Time Application Interface (RTAI) and two varieties of Real Time Linux (RTL), RTLFree and RTLPro. During my time here at NASA I have been testing various hard real time solutions operating as layers on the Linux Operating System. All testing is being run on an Intel SBC 2590 which is a common embedded hardware platform. The test plan was provided to me by the Software Assurance group at the start of my internship and my job has been to test the systems by developing and executing the test cases on the hardware. These tests are constructed so that the Software Assurance group can get hard test data for a comparison between the open source and proprietary implementations of hard real time solutions.

  5. It's Time to Consider Open Source Software

    ERIC Educational Resources Information Center

    Pfaffman, Jay

    2007-01-01

    In 1985 Richard Stallman, a computer programmer, released "The GNU Manifesto" in which he proclaimed a golden rule: One must share computer programs. Software vendors required him to agree to license agreements that forbade sharing programs with others, but he refused to "break solidarity" with other computer users whom he assumed also wanted to…

  6. Resource utilization during software development

    NASA Technical Reports Server (NTRS)

    Zelkowitz, Marvin V.

    1988-01-01

    This paper discusses resource utilization over the life cycle of software development and discusses the role that the current 'waterfall' model plays in the actual software life cycle. Software production in the NASA environment was analyzed to measure these differences. The data from 13 different projects were collected by the Software Engineering Laboratory at NASA Goddard Space Flight Center and analyzed for similarities and differences. The results indicate that the waterfall model is not very realistic in practice, and that as technology introduces further perturbations to this model with concepts like executable specifications, rapid prototyping, and wide-spectrum languages, we need to modify our model of this process.

  7. Software development without languages

    NASA Technical Reports Server (NTRS)

    Osborne, Haywood S.

    1988-01-01

    Automatic programming generally involves the construction of a formal specification; i.e., one which allows unambiguous interpretation by tools for the subsequent production of the corresponding software. Previous practical efforts in this direction have focused on the serious problems of: (1) designing the optimum specification language; and (2) mapping (translating or compiling) from this specification language to the program itself. The approach proposed bypasses the above problems. It postulates that the specification proper should be an intermediate form, with the sole function of containing information sufficient to facilitate construction of programs and also of matching documentation. Thus, the means of forming the intermediary becomes a human factors task rather than a linguistic one; human users will read documents generated from the specification, rather than the specification itself.

  8. The Case for Open Source Software in Digital Forensics

    NASA Astrophysics Data System (ADS)

    Zanero, Stefano; Huebner, Ewa

    In this introductory chapter we discuss the importance of the use of open source software (OSS), and in particular of free software (FLOSS) in computer forensics investigations including the identification, capture, preservation and analysis of digital evidence; we also discuss the importance of OSS in computer forensics

  9. Wolf Testing: Open Source Testing Software

    NASA Astrophysics Data System (ADS)

    Braasch, P.; Gay, P. L.

    2004-12-01

    Wolf Testing is software for easily creating and editing exams. Wolf Testing allows the user to create an exam from a database of questions, view it on screen, and easily print it along with the corresponding answer guide. The questions can be multiple choice, short answer, long answer, or true and false varieties. This software can be accessed securely from any location, allowing the user to easily create exams from home. New questions, which can include associated pictures, can be added through a web-interface. After adding in questions, they can be edited, deleted, or duplicated into multiple versions. Long-term test creation is simplified, as you are able to quickly see what questions you have asked in the past and insert them, with or without editing, into future tests. All tests are archived in the database. Written in PHP and MySQL, this software can be installed on any UNIX / Linux platform, including Macintosh OS X. The secure interface keeps students out, and allows you to decide who can create tests and who can edit information already in the database. Tests can be output as either html with pictures or rich text without pictures, and there are plans to add PDF and MS Word formats as well. We would like to thank Dr. Wolfgang Rueckner and the Harvard University Science Center for providing incentive to start this project, computers and resources to complete this project, and inspiration for the project's name. We would also like to thank Dr. Ronald Newburgh for his assistance in beta testing.

  10. Software Development Standard Processes (SDSP)

    NASA Technical Reports Server (NTRS)

    Lavin, Milton L.; Wang, James J.; Morillo, Ronald; Mayer, John T.; Jamshidian, Barzia; Shimizu, Kenneth J.; Wilkinson, Belinda M.; Hihn, Jairus M.; Borgen, Rosana B.; Meyer, Kenneth N.; Crean, Kathleen A.; Rinker, George C.; Smith, Thomas P.; Lum, Karen T.; Hanna, Robert A.; Erickson, Daniel E.; Gamble, Edward B., Jr.; Morgan, Scott C.; Kelsay, Michael G.; Newport, Brian J.; Lewicki, Scott A.; Stipanuk, Jeane G.; Cooper, Tonja M.; Meshkat, Leila

    2011-01-01

    A JPL-created set of standard processes is to be used throughout the lifecycle of software development. These SDSPs cover a range of activities, from management and engineering activities, to assurance and support activities. These processes must be applied to software tasks per a prescribed set of procedures. JPL s Software Quality Improvement Project is currently working at the behest of the JPL Software Process Owner to ensure that all applicable software tasks follow these procedures. The SDSPs are captured as a set of 22 standards in JPL s software process domain. They were developed in-house at JPL by a number of Subject Matter Experts (SMEs) residing primarily within the Engineering and Science Directorate, but also from the Business Operations Directorate and Safety and Mission Success Directorate. These practices include not only currently performed best practices, but also JPL-desired future practices in key thrust areas like software architecting and software reuse analysis. Additionally, these SDSPs conform to many standards and requirements to which JPL projects are beholden.

  11. OpenStereo: Open Source, Cross-Platform Software for Structural Geology Analysis

    NASA Astrophysics Data System (ADS)

    Grohmann, C. H.; Campanha, G. A.

    2010-12-01

    Free and open source software (FOSS) are increasingly seen as synonyms of innovation and progress. Freedom to run, copy, distribute, study, change and improve the software (through access to the source code) assure a high level of positive feedback between users and developers, which results in stable, secure and constantly updated systems. Several software packages for structural geology analysis are available to the user, with commercial licenses or that can be downloaded at no cost from the Internet. Some provide basic tools of stereographic projections such as plotting poles, great circles, density contouring, eigenvector analysis, data rotation etc, while others perform more specific tasks, such as paleostress or geotechnical/rock stability analysis. This variety also means a wide range of data formating for input, Graphical User Interface (GUI) design and graphic export format. The majority of packages is built for MS-Windows and even though there are packages for the UNIX-based MacOS, there aren't native packages for *nix (UNIX, Linux, BSD etc) Operating Systems (OS), forcing the users to run these programs with emulators or virtual machines. Those limitations lead us to develop OpenStereo, an open source, cross-platform software for stereographic projections and structural geology. The software is written in Python, a high-level, cross-platform programming language and the GUI is designed with wxPython, which provide a consistent look regardless the OS. Numeric operations (like matrix and linear algebra) are performed with the Numpy module and all graphic capabilities are provided by the Matplolib library, including on-screen plotting and graphic exporting to common desktop formats (emf, eps, ps, pdf, png, svg). Data input is done with simple ASCII text files, with values of dip direction and dip/plunge separated by spaces, tabs or commas. The user can open multiple file at the same time (or the same file more than once), and overlay different elements of

  12. Getting Open Source Software into Schools: Strategies and Challenges

    ERIC Educational Resources Information Center

    Hepburn, Gary; Buley, Jan

    2006-01-01

    In this article Gary Hepburn and Jan Buley outline different approaches to implementing open source software (OSS) in schools; they also address the challenges that open source advocates should anticipate as they try to convince educational leaders to adopt OSS. With regard to OSS implementation, they note that schools have a flexible range of…

  13. Teaching Robotics Software with the Open Hardware Mobile Manipulator

    ERIC Educational Resources Information Center

    Vona, M.; Shekar, N. H.

    2013-01-01

    The "open hardware mobile manipulator" (OHMM) is a new open platform with a unique combination of features for teaching robotics software and algorithms. On-board low- and high-level processors support real-time embedded programming and motor control, as well as higher-level coding with contemporary libraries. Full hardware designs and…

  14. Free and Open Source Software for land degradation vulnerability assessment

    NASA Astrophysics Data System (ADS)

    Imbrenda, Vito; Calamita, Giuseppe; Coluzzi, Rosa; D'Emilio, Mariagrazia; Lanfredi, Maria Teresa; Perrone, Angela; Ragosta, Maria; Simoniello, Tiziana

    2013-04-01

    Nowadays the role of FOSS software in scientific research is becoming increasingly important. Besides the important issues of reduced costs for licences, legality and security there are many other reasons that make FOSS software attractive. Firstly, making the code opened is a warranty of quality permitting to thousands of developers around the world to check the code and fix bugs rather than rely on vendors claims. FOSS communities are usually enthusiastic about helping other users for solving problems and expand or customize software (flexibility). Most important for this study, the interoperability allows to combine the user-friendly QGIS with the powerful GRASS-GIS and the richness of statistical methods of R in order to process remote sensing data and to perform geo-statistical analysis in one only environment. This study is focused on the land degradation (i.e. the reduction in the capacity of the land to provide ecosystem goods and services and assure its functions) and in particular on the estimation of the vulnerability levels in order to suggest appropriate policy actions to reduce/halt land degradation impacts, using the above mentioned software. The area investigated is the Basilicata Region (Southern Italy) where large natural areas are mixed with anthropized areas. To identify different levels of vulnerability we adopted the Environmentally Sensitive Areas (ESAs) model, based on the combination of indicators related to soil, climate, vegetation and anthropic stress. Such indicators were estimated by using the following data-sources: - Basilicata Region Geoportal to assess soil vulnerability; - DESERTNET2 project to evaluate potential vegetation vulnerability and climate vulnerability; - NDVI-MODIS satellite time series (2000-2010) with 250m resolution, available as 16-day composite from the NASA LP DAAC to characterize the dynamic component of vegetation; - Agricultural Census data 2010, Corine Land Cover 2006 and morphological information to assess

  15. Impact of Agile Software Development Model on Software Maintainability

    ERIC Educational Resources Information Center

    Gawali, Ajay R.

    2012-01-01

    Software maintenance and support costs account for up to 60% of the overall software life cycle cost and often burdens tightly budgeted information technology (IT) organizations. Agile software development approach delivers business value early, but implications on software maintainability are still unknown. The purpose of this quantitative study…

  16. The ALPS Project: Open Source Software for Quantum Lattice Models

    NASA Astrophysics Data System (ADS)

    Trebst, Simon

    2004-03-01

    Algorithms for the simulation of strongly correlated quantum lattice models have matured and there is increasing demand for reliable simulation results both from theoreticians to test ideas and from experimental researchers as means of data analysis. Unlike in other fields there have been no "community codes" available, with the computational experts writing individual codes, adjusting them for specific needs of new projects and thereby investing weeks to months in software development for each project. We will present experiences with the ALPS collaboration, an open source effort aiming at simplifying the development of simulation codes for strongly correlated classical and quantum lattice models. It provides powerful but generic libraries and open-source application programs (such as classical and quantum Monte Carlo, exact diagonalization, DMRG, and others), intended also for non-experts. We will especially address three topics that are of relevance also to other similar efforts: license issues have been extensively discussed, especially concerning the scientific return of making source codes available to the community. The ALPS license is a compromise ensuring scientific return by requesting citations to the original authors of the codes while making sources openly available for future developments. The coordination of an international collaboration with researchers contributing from Austria, France, Germany, Japan and Switzerland by intense developer workshops on a semi-annual basis and annual user workshops is discussed. The situation for funding needed for such a joint open source development effort, which is often classified more as an infrastructure project and less as a research project, is also addressed. Work done with the ALPS collaboration initiated by M. Troyer (ETH) and S. Todo (Tokyo). For details and a list of members see http://alps.comp-phys.org/

  17. Achieving Better Buying Power through Acquisition of Open Architecture Software Systems for Web-Based and Mobile Devices

    DTIC Science & Technology

    2015-05-01

    seeking ways to reduce acquisition cost and effort through shared development/use of common OA software system components (proprietary/ open source Apps...Government) open source software  and others Emerging challenges in achieving BBP via OA Web/mobile software systems  Acquisition program managers/staff...Achieving Better Buying Power through Acquisition of Open Architecture Software Systems for Web-Based and Mobile Devices Walt Scacchi and Thomas

  18. Implementation of an OAIS Repository Using Free, Open Source Software

    NASA Astrophysics Data System (ADS)

    Flathers, E.; Gessler, P. E.; Seamon, E.

    2015-12-01

    The Northwest Knowledge Network (NKN) is a regional data repository located at the University of Idaho that focuses on the collection, curation, and distribution of research data. To support our home institution and others in the region, we offer services to researchers at all stages of the data lifecycle—from grant application and data management planning to data distribution and archive. In this role, we recognize the need to work closely with other data management efforts at partner institutions and agencies, as well as with larger aggregation efforts such as our state geospatial data clearinghouses, data.gov, DataONE, and others. In the past, one of our challenges with monolithic, prepackaged data management solutions is that customization can be difficult to implement and maintain, especially as new versions of the software are released that are incompatible with our local codebase. Our solution is to break the monolith up into its constituent parts, which offers us several advantages. First, any customizations that we make are likely to fall into areas that can be accessed through Application Program Interfaces (API) that are likely to remain stable over time, so our code stays compatible. Second, as components become obsolete or insufficient to meet new demands that arise, we can replace the individual components with minimal effect on the rest of the infrastructure, causing less disruption to operations. Other advantages include increased system reliability, staggered rollout of new features, enhanced compatibility with legacy systems, reduced dependence on a single software company as a point of failure, and the separation of development into manageable tasks. In this presentation, we describe our application of the Service Oriented Architecture (SOA) design paradigm to assemble a data repository that conforms to the Open Archival Information System (OAIS) Reference Model primarily using a collection of free and open-source software. We detail the design

  19. Building Scientific Workflows for the Geosciences with Open Community Software

    NASA Astrophysics Data System (ADS)

    Pierce, M. E.; Marru, S.; Weerawarana, S. M.

    2012-12-01

    We describe the design and development of the Apache Airavata scientific workflow software and its application to problems in geosciences. Airavata is based on Service Oriented Architecture principles and is developed as general purpose software for managing large-scale science applications on supercomputing resources such as the NSF's XSEDE. Based on the NSF-funded EarthCube Workflow Working Group activities, we discuss the application of this software relative to specific requirements (such as data stream data processing, event triggering, dealing with large data sets, and advanced distributed execution patterns involved in data mining). We also consider the role of governance in EarthCube software development and present the development of Airavata software through the Apache Software Foundation's community development model. We discuss the potential impacts on software accountability and sustainability using this model.

  20. [The use of open source software in graphic anatomic reconstructions and in biomechanic simulations].

    PubMed

    Ciobanu, O

    2009-01-01

    The objective of this study was to obtain three-dimensional (3D) images and to perform biomechanical simulations starting from DICOM images obtained by computed tomography (CT). Open source software were used to prepare digitized 2D images of tissue sections and to create 3D reconstruction from the segmented structures. Finally, 3D images were used in open source software in order to perform biomechanic simulations. This study demonstrates the applicability and feasibility of open source software developed in our days for the 3D reconstruction and biomechanic simulation. The use of open source software may improve the efficiency of investments in imaging technologies and in CAD/CAM technologies for implants and prosthesis fabrication which need expensive specialized software.

  1. Achieving Better Buying Power for Mobile Open Architecture Software Systems Through Diverse Acquisition Scenarios

    DTIC Science & Technology

    2016-04-30

    software (OSS) and proprietary (CSS) software elements or remote services (Scacchi, 2002, 2010), eventually including recent efforts to support Web ...specific platforms, including those operating on secured Web /mobile devices.  Common Development Technology provides AC development tools and common...transition to OA systems and OSS software elements, specifically for Web and Mobile devices within the realm of C3CB. OA, Open APIs, OSS, and CSS OA

  2. OpenMS – An open-source software framework for mass spectrometry

    PubMed Central

    Sturm, Marc; Bertsch, Andreas; Gröpl, Clemens; Hildebrandt, Andreas; Hussong, Rene; Lange, Eva; Pfeifer, Nico; Schulz-Trieglaff, Ole; Zerck, Alexandra; Reinert, Knut; Kohlbacher, Oliver

    2008-01-01

    Background Mass spectrometry is an essential analytical technique for high-throughput analysis in proteomics and metabolomics. The development of new separation techniques, precise mass analyzers and experimental protocols is a very active field of research. This leads to more complex experimental setups yielding ever increasing amounts of data. Consequently, analysis of the data is currently often the bottleneck for experimental studies. Although software tools for many data analysis tasks are available today, they are often hard to combine with each other or not flexible enough to allow for rapid prototyping of a new analysis workflow. Results We present OpenMS, a software framework for rapid application development in mass spectrometry. OpenMS has been designed to be portable, easy-to-use and robust while offering a rich functionality ranging from basic data structures to sophisticated algorithms for data analysis. This has already been demonstrated in several studies. Conclusion OpenMS is available under the Lesser GNU Public License (LGPL) from the project website at . PMID:18366760

  3. Open source software integrated into data services of Japanese planetary explorations

    NASA Astrophysics Data System (ADS)

    Yamamoto, Y.; Ishihara, Y.; Otake, H.; Imai, K.; Masuda, K.

    2015-12-01

    Scientific data obtained by Japanese scientific satellites and lunar and planetary explorations are archived in DARTS (Data ARchives and Transmission System). DARTS provides the data with a simple method such as HTTP directory listing for long-term preservation while DARTS tries to provide rich web applications for ease of access with modern web technologies based on open source software. This presentation showcases availability of open source software through our services. KADIAS is a web-based application to search, analyze, and obtain scientific data measured by SELENE(Kaguya), a Japanese lunar orbiter. KADIAS uses OpenLayers to display maps distributed from Web Map Service (WMS). As a WMS server, open source software MapServer is adopted. KAGUYA 3D GIS (KAGUYA 3D Moon NAVI) provides a virtual globe for the SELENE's data. The main purpose of this application is public outreach. NASA World Wind Java SDK is used to develop. C3 (Cross-Cutting Comparisons) is a tool to compare data from various observations and simulations. It uses Highcharts to draw graphs on web browsers. Flow is a tool to simulate a Field-Of-View of an instrument onboard a spacecraft. This tool itself is open source software developed by JAXA/ISAS, and the license is BSD 3-Caluse License. SPICE Toolkit is essential to compile FLOW. SPICE Toolkit is also open source software developed by NASA/JPL, and the website distributes many spacecrafts' data. Nowadays, open source software is an indispensable tool to integrate DARTS services.

  4. Tessera: Open source software for accelerated data science

    SciTech Connect

    Sego, Landon H.; Hafen, Ryan P.; Director, Hannah M.; LaMothe, Ryan R.

    2014-06-30

    Extracting useful, actionable information from data can be a formidable challenge for the safeguards, nonproliferation, and arms control verification communities. Data scientists are often on the “front-lines” of making sense of complex and large datasets. They require flexible tools that make it easy to rapidly reformat large datasets, interactively explore and visualize data, develop statistical algorithms, and validate their approaches—and they need to perform these activities with minimal lines of code. Existing commercial software solutions often lack extensibility and the flexibility required to address the nuances of the demanding and dynamic environments where data scientists work. To address this need, Pacific Northwest National Laboratory developed Tessera, an open source software suite designed to enable data scientists to interactively perform their craft at the terabyte scale. Tessera automatically manages the complicated tasks of distributed storage and computation, empowering data scientists to do what they do best: tackling critical research and mission objectives by deriving insight from data. We illustrate the use of Tessera with an example analysis of computer network data.

  5. An explicit-solvent conformation search method using open software

    PubMed Central

    Gaalswyk, Kari

    2016-01-01

    Computer modeling is a popular tool to identify the most-probable conformers of a molecule. Although the solvent can have a large effect on the stability of a conformation, many popular conformational search methods are only capable of describing molecules in the gas phase or with an implicit solvent model. We have developed a work-flow for performing a conformation search on explicitly-solvated molecules using open source software. This method uses replica exchange molecular dynamics (REMD) to sample the conformational states of the molecule efficiently. Cluster analysis is used to identify the most probable conformations from the simulated trajectory. This work-flow was tested on drug molecules α-amanitin and cabergoline to illustrate its capabilities and effectiveness. The preferred conformations of these molecules in gas phase, implicit solvent, and explicit solvent are significantly different. PMID:27280078

  6. Closing gaps between open software and public data in a hackathon setting: User-centered software prototyping

    PubMed Central

    Busby, Ben; Lesko, Matthew; Federer, Lisa

    2016-01-01

    In genomics, bioinformatics and other areas of data science, gaps exist between extant public datasets and the open-source software tools built by the community to analyze similar data types.  The purpose of biological data science hackathons is to assemble groups of genomics or bioinformatics professionals and software developers to rapidly prototype software to address these gaps.  The only two rules for the NCBI-assisted hackathons run so far are that 1) data either must be housed in public data repositories or be deposited to such repositories shortly after the hackathon’s conclusion, and 2) all software comprising the final pipeline must be open-source or open-use.  Proposed topics, as well as suggested tools and approaches, are distributed to participants at the beginning of each hackathon and refined during the event.  Software, scripts, and pipelines are developed and published on GitHub, a web service providing publicly available, free-usage tiers for collaborative software development. The code resulting from each hackathon is published at https://github.com/NCBI-Hackathons/ with separate directories or repositories for each team. PMID:27134733

  7. Closing gaps between open software and public data in a hackathon setting: User-centered software prototyping.

    PubMed

    Busby, Ben; Lesko, Matthew; Federer, Lisa

    2016-01-01

    In genomics, bioinformatics and other areas of data science, gaps exist between extant public datasets and the open-source software tools built by the community to analyze similar data types.  The purpose of biological data science hackathons is to assemble groups of genomics or bioinformatics professionals and software developers to rapidly prototype software to address these gaps.  The only two rules for the NCBI-assisted hackathons run so far are that 1) data either must be housed in public data repositories or be deposited to such repositories shortly after the hackathon's conclusion, and 2) all software comprising the final pipeline must be open-source or open-use.  Proposed topics, as well as suggested tools and approaches, are distributed to participants at the beginning of each hackathon and refined during the event.  Software, scripts, and pipelines are developed and published on GitHub, a web service providing publicly available, free-usage tiers for collaborative software development. The code resulting from each hackathon is published at https://github.com/NCBI-Hackathons/ with separate directories or repositories for each team.

  8. Open Source Next Generation Visualization Software for Interplanetary Missions

    NASA Technical Reports Server (NTRS)

    Trimble, Jay; Rinker, George

    2016-01-01

    Mission control is evolving quickly, driven by the requirements of new missions, and enabled by modern computing capabilities. Distributed operations, access to data anywhere, data visualization for spacecraft analysis that spans multiple data sources, flexible reconfiguration to support multiple missions, and operator use cases, are driving the need for new capabilities. NASA's Advanced Multi-Mission Operations System (AMMOS), Ames Research Center (ARC) and the Jet Propulsion Laboratory (JPL) are collaborating to build a new generation of mission operations software for visualization, to enable mission control anywhere, on the desktop, tablet and phone. The software is built on an open source platform that is open for contributions (http://nasa.github.io/openmct).

  9. Instrumentino: An Open-Source Software for Scientific Instruments.

    PubMed

    Koenka, Israel Joel; Sáiz, Jorge; Hauser, Peter C

    2015-01-01

    Scientists often need to build dedicated computer-controlled experimental systems. For this purpose, it is becoming common to employ open-source microcontroller platforms, such as the Arduino. These boards and associated integrated software development environments provide affordable yet powerful solutions for the implementation of hardware control of transducers and acquisition of signals from detectors and sensors. It is, however, a challenge to write programs that allow interactive use of such arrangements from a personal computer. This task is particularly complex if some of the included hardware components are connected directly to the computer and not via the microcontroller. A graphical user interface framework, Instrumentino, was therefore developed to allow the creation of control programs for complex systems with minimal programming effort. By writing a single code file, a powerful custom user interface is generated, which enables the automatic running of elaborate operation sequences and observation of acquired experimental data in real time. The framework, which is written in Python, allows extension by users, and is made available as an open source project.

  10. Ancient Secrets of Open-Source Geoscience Software Management (Invited)

    NASA Astrophysics Data System (ADS)

    Zender, C. S.

    2009-12-01

    Geoscience research often involves complex models and data analysis designed to test increasingly sophisticated theories. Re-use and improvement of existing models and tools can be more efficient than their re-invention, and this re-use can accelerate knowledge generation and discovery. Open Source Software (OSS) is designed and intended to be re-used, extended, and improved. Hence Earth and Space Science Models (ESSMs) intended for community use are commonly distributed with OSS or OSS-like licenses. Why is it that, despite their permissive licenses, only a relatively small fraction of ESSMs receive community adoption, improvement, and extension? One reason is that developing community geoscience software remains a difficult and perilous exercise for the practicing researcher. This presentation will intercompare the rationale and results of different software management approaches taken in my dozen years as a developer and maintainer of, and participant in, four distinct ESSMs with 10 to 10,000 users. The primary lesson learned is that geoscience research is similar to the wider OSS universe in that most participants are motivated by the desire for greater professional recognition and attribution best summarized as "mindshare". ESSM adoption often hinges on whether the tension between users and developers for mindshare manifests as cooperation or competition. ESSM project management, therefore, should promote (but not require) recognition of all contributors. More practical model management practices include mailing lists, highly visible documentation, consistent APIs, regression tests, and periodic releases to improve features and fix bugs and builds. However, most ESSMs originate as working incarnations of short-term (~three year) research projects and, as such, lack permanent institutional support. Adhering to best software practices to transition these ESSMs from personal to community models often requires sacrificing research time. Recently, funding agencies

  11. Advanced Software Development Workstation Project

    NASA Technical Reports Server (NTRS)

    Lee, Daniel

    1989-01-01

    The Advanced Software Development Workstation Project, funded by Johnson Space Center, is investigating knowledge-based techniques for software reuse in NASA software development projects. Two prototypes have been demonstrated and a third is now in development. The approach is to build a foundation that provides passive reuse support, add a layer that uses domain-independent programming knowledge, add a layer that supports the acquisition of domain-specific programming knowledge to provide active support, and enhance maintainability and modifiability through an object-oriented approach. The development of new application software would use specification-by-reformulation, based on a cognitive theory of retrieval from very long-term memory in humans, and using an Ada code library and an object base. Current tasks include enhancements to the knowledge representation of Ada packages and abstract data types, extensions to support Ada package instantiation knowledge acquisition, integration with Ada compilers and relational databases, enhancements to the graphical user interface, and demonstration of the system with a NASA contractor-developed trajectory simulation package. Future work will focus on investigating issues involving scale-up and integration.

  12. Post-Modern Software Development

    NASA Technical Reports Server (NTRS)

    Filman, Robert E.

    2005-01-01

    The history of software development includes elements of art, science, engineering, and fashion(though very little manufacturing). In all domains, old ideas give way or evolve to new ones: in the fine arts, the baroque gave way to rococo, romanticism, modernism, postmodernism, and so forth. What is the postmodern programming equivalent? That is, what comes after object orientation?

  13. Human factors in software development

    SciTech Connect

    Curtis, B.

    1986-01-01

    This book presents an overview of ergonomics/human factors in software development, recent research, and classic papers. Articles are drawn from the following areas of psychological research on programming: cognitive ergonomics, cognitive psychology, and psycholinguistics. Topics examined include: theoretical models of how programmers solve technical problems, the characteristics of programming languages, specification formats in behavioral research and psychological aspects of fault diagnosis.

  14. Software development environment, appendix F

    NASA Technical Reports Server (NTRS)

    Riddle, W. E.

    1980-01-01

    The current status in the area of software development environments is assessed. The purposes of environments, the types of environments, the constituents of an environment, the issue of environment integration, and the problems which must be solved in preparing an environment are discussed. Some general maxims to guide near-term future work are proposed.

  15. Archiving a Software Development Project

    DTIC Science & Technology

    2013-04-01

    an ongoing monitoring system that identifies attempts and requests for retrieval, and ensures that the attempts and requests cannot proceed without...Intelligence Division Peter Fisher has worked as a consultant, systems analyst, software developer and project manager in Australia, Holland, the USA...4 3.1.3 DRMS – Defence Records Management System

  16. Open-source meteor detection software for low-cost single-board computers

    NASA Astrophysics Data System (ADS)

    Vida, D.; Zubović, D.; Šegon, D.; Gural, P.; Cupec, R.

    2016-01-01

    This work aims to overcome the current price threshold of meteor stations which can sometimes deter meteor enthusiasts from owning one. In recent years small card-sized computers became widely available and are used for numerous applications. To utilize such computers for meteor work, software which can run on them is needed. In this paper we present a detailed description of newly-developed open-source software for fireball and meteor detection optimized for running on low-cost single board computers. Furthermore, an update on the development of automated open-source software which will handle video capture, fireball and meteor detection, astrometry and photometry is given.

  17. Open Source Projects in Software Engineering Education: A Mapping Study

    ERIC Educational Resources Information Center

    Nascimento, Debora M. C.; Almeida Bittencourt, Roberto; Chavez, Christina

    2015-01-01

    Context: It is common practice in academia to have students work with "toy" projects in software engineering (SE) courses. One way to make such courses more realistic and reduce the gap between academic courses and industry needs is getting students involved in open source projects (OSP) with faculty supervision. Objective: This study…

  18. Digital Preservation in Open-Source Digital Library Software

    ERIC Educational Resources Information Center

    Madalli, Devika P.; Barve, Sunita; Amin, Saiful

    2012-01-01

    Digital archives and digital library projects are being initiated all over the world for materials of different formats and domains. To organize, store, and retrieve digital content, many libraries as well as archiving centers are using either proprietary or open-source software. While it is accepted that print media can survive for centuries with…

  19. Managing MDO Software Development Projects

    NASA Technical Reports Server (NTRS)

    Townsend, J. C.; Salas, A. O.

    2002-01-01

    Over the past decade, the NASA Langley Research Center developed a series of 'grand challenge' applications demonstrating the use of parallel and distributed computation and multidisciplinary design optimization. All but the last of these applications were focused on the high-speed civil transport vehicle; the final application focused on reusable launch vehicles. Teams of discipline experts developed these multidisciplinary applications by integrating legacy engineering analysis codes. As teams became larger and the application development became more complex with increasing levels of fidelity and numbers of disciplines, the need for applying software engineering practices became evident. This paper briefly introduces the application projects and then describes the approaches taken in project management and software engineering for each project; lessons learned are highlighted.

  20. What makes computational open source software libraries successful?

    NASA Astrophysics Data System (ADS)

    Bangerth, Wolfgang; Heister, Timo

    2013-01-01

    Software is the backbone of scientific computing. Yet, while we regularly publish detailed accounts about the results of scientific software, and while there is a general sense of which numerical methods work well, our community is largely unaware of best practices in writing the large-scale, open source scientific software upon which our discipline rests. This is particularly apparent in the commonly held view that writing successful software packages is largely the result of simply ‘being a good programmer’ when in fact there are many other factors involved, for example the social skill of community building. In this paper, we consider what we have found to be the necessary ingredients for successful scientific software projects and, in particular, for software libraries upon which the vast majority of scientific codes are built today. In particular, we discuss the roles of code, documentation, communities, project management and licenses. We also briefly comment on the impact on academic careers of engaging in software projects.

  1. Cloud based, Open Source Software Application for Mitigating Herbicide Drift

    NASA Astrophysics Data System (ADS)

    Saraswat, D.; Scott, B.

    2014-12-01

    The spread of herbicide resistant weeds has resulted in the need for clearly marked fields. In response to this need, the University of Arkansas Cooperative Extension Service launched a program named Flag the Technology in 2011. This program uses color-coded flags as a visual alert of the herbicide trait technology within a farm field. The flag based program also serves to help avoid herbicide misapplication and prevent herbicide drift damage between fields with differing crop technologies. This program has been endorsed by Southern Weed Science Society of America and is attracting interest from across the USA, Canada, and Australia. However, flags have risk of misplacement or disappearance due to mischief or severe windstorms/thunderstorms, respectively. This presentation will discuss the design and development of a cloud-based, free application utilizing open-source technologies, called Flag the Technology Cloud (FTTCloud), for allowing agricultural stakeholders to color code their farm fields for indicating herbicide resistant technologies. The developed software utilizes modern web development practices, widely used design technologies, and basic geographic information system (GIS) based interactive interfaces for representing, color-coding, searching, and visualizing fields. This program has also been made compatible for a wider usability on different size devices- smartphones, tablets, desktops and laptops.

  2. OpenFluo: a free open-source software for optophysiological data analyses.

    PubMed

    Dupuy, Fabienne; Casas, Jérôme; Bagnères, Anne-Geneviève; Lazzari, Claudio R

    2009-10-15

    Optophysiological imaging methods can be used to record the activity in vivo of groups of neurons from particular areas of the nervous system (e.g. the brain) or of cell cultures. Such methods are used, for example, in the spatio-temporal coding and processing of sensory information. However, the data generated by optophysiological methods must be processed carefully if relevant results are to be obtained. The raw fluorescence data must be digitally filtered and analyzed appropriately to obtain activity maps and fluorescence time course for single spots. We used a Matlab environment to implement the necessary procedures in a user-friendly manner. We developed OpenFluo, a program for people inexperienced in optophysiological methods and for advanced users wishing to perform simple, rapid data analyses without the need for complex, time-consuming programming procedures. This program will be made available as stand-alone software and as an open-source Matlab tool. It will therefore be possible for experienced users to integrate their own routines. We validated this software by assessing its ability to process both artificial recordings and real biological data corresponding to recordings of the honeybee brain.

  3. Open source hardware and software platform for robotics and artificial intelligence applications

    NASA Astrophysics Data System (ADS)

    Liang, S. Ng; Tan, K. O.; Lai Clement, T. H.; Ng, S. K.; Mohammed, A. H. Ali; Mailah, Musa; Azhar Yussof, Wan; Hamedon, Zamzuri; Yussof, Zulkifli

    2016-02-01

    Recent developments in open source hardware and software platforms (Android, Arduino, Linux, OpenCV etc.) have enabled rapid development of previously expensive and sophisticated system within a lower budget and flatter learning curves for developers. Using these platform, we designed and developed a Java-based 3D robotic simulation system, with graph database, which is integrated in online and offline modes with an Android-Arduino based rubbish picking remote control car. The combination of the open source hardware and software system created a flexible and expandable platform for further developments in the future, both in the software and hardware areas, in particular in combination with graph database for artificial intelligence, as well as more sophisticated hardware, such as legged or humanoid robots.

  4. Software Development as Music Education Research

    ERIC Educational Resources Information Center

    Brown, Andrew R.

    2007-01-01

    This paper discusses how software development can be used as a method for music education research. It explains how software development can externalize ideas, stimulate action and reflection, and provide evidence to support the educative value of new software-based experiences. Parallels between the interactive software development process and…

  5. A multiple node software development environment

    SciTech Connect

    Heinicke, P.; Nicinski, T.; Constanta-Fanourakis, P.; Petravick, D.; Pordes, R.; Ritchie, D.; White, V.

    1987-06-01

    Experimenters on over 30 DECnet nodes at Fermilab use software developed, distributed, and maintained by the Data Acquisition Software Group. A general methodology and set of tools have been developed to distribute, use and manage the software on different sites. The methodology and tools are of interest to any group developing and using software on multiple nodes.

  6. Open Rotor Development

    NASA Technical Reports Server (NTRS)

    Van Zante, Dale E.; Rizzi, Stephen A.

    2016-01-01

    The ERA project executed a comprehensive test program for Open Rotor aerodynamic and acoustic performance. System studies used the data to estimate the fuel burn savings and acoustic margin for an aircraft system with open rotor propulsion. The acoustic measurements were used to produce an auralization that compares the legacy blades to the current generation of open rotor designs.

  7. Application of open source image guided therapy software in MR-guided therapies.

    PubMed

    Hata, Nobuhiko; Piper, Steve; Jolesz, Ferenc A; Tempany, Clare M C; Black, Peter McL; Morikawa, Shigehiro; Iseki, Horoshi; Hashizume, Makoto; Kikinis, Ron

    2007-01-01

    We present software engineering methods to provide free open-source software for MR-guided therapy. We report that graphical representation of the surgical tools, interconnectively with the tracking device, patient-to-image registration, and MRI-based thermal mapping are crucial components of MR-guided therapy in sharing such software. Software process includes a network-based distribution mechanism by multi-platform compiling tool CMake, CVS, quality assurance software DART. We developed six procedures in four separate clinical sites using proposed software engineering and process, and found the proposed method is feasible to facilitate multicenter clinical trial of MR-guided therapies. Our future studies include use of the software in non-MR-guided therapies.

  8. Software based controls module development

    SciTech Connect

    Graves, v.b.; kelley, g; welch, j.c.

    1999-12-10

    A project was initiated at the Oak Ridge Y-12 Plant to implement software geometric error compensation within a PC-based machine tool controller from Manufacturing Data Systems, Inc. This project may be the first in which this type of compensation system was implemented in a commercially available machine tool controller totally in software. Previous implementations typically required using an external computer and hardware to interface through the position feedback loop of the controller because direct access to the controller software was not available. The test-bed machine for this project was a 2-axis Excello 921 T-base lathe. A mathematical error model of the lathe was created using homogeneous transformation matrices to relate the positions of the machine's slides to each other and to a world reference system. Equations describing the effects of the geometric errors were derived from the model. A software architecture was developed to support geometric error compensation for machine tools with up to 3 linear axes. Rotary axes were not supported in this implementation, but the developed architecture would not preclude their support in the future. Specific implementations will be dependent upon the configuration of the machine tool. A laser measuring system from Automated Precision, Inc. was used to characterize the lathe's geometric errors as functions of axis position and direction of motion. Multiple data files generated by the laser system were combined into a single Error File that was read at system startup and used by the compensation system to provide real-time position adjustments to the axis servos. A Renishaw Ballbar was used to evaluate the compensation system. Static positioning tests were conducted in an attempt to observe improved positioning accuracy with the compensation system enabled. These tests gave inconsistent results due to the lathe's inability to position the tool repeatably. The development of the architecture and compensation

  9. pyLIMA : an open source microlensing software

    NASA Astrophysics Data System (ADS)

    Bachelet, Etienne

    2017-01-01

    Planetary microlensing is a unique tool to detect cold planets around low-mass stars which is approaching a watershed in discoveries as near-future missions incorporate dedicated surveys. NASA and ESA have decided to complement WFIRST-AFTA and Euclid with microlensing programs to enrich our statistics about this planetary population. Of the nany challenges in- herent in these missions, the data analysis is of primary importance, yet is often perceived as time consuming, complex and daunting barrier to participation in the field. We present the first open source modeling software to conduct a microlensing analysis. This software is written in Python and use as much as possible existing packages.

  10. Software Engineering: A New Component for Instructional Software Development.

    ERIC Educational Resources Information Center

    Chen, J. Wey; Shen, Chung-Wei

    1989-01-01

    Discussion of software engineering for computer-based instruction (CBI) focuses on a model for instructional software development. Highlights include a multidisciplinary team approach; needs analysis; feasibility study; requirement analysis; prototype construction; design phase; implementation and development; testing and evaluation; and project…

  11. OpenMebius: an open source software for isotopically nonstationary 13C-based metabolic flux analysis.

    PubMed

    Kajihata, Shuichi; Furusawa, Chikara; Matsuda, Fumio; Shimizu, Hiroshi

    2014-01-01

    The in vivo measurement of metabolic flux by (13)C-based metabolic flux analysis ((13)C-MFA) provides valuable information regarding cell physiology. Bioinformatics tools have been developed to estimate metabolic flux distributions from the results of tracer isotopic labeling experiments using a (13)C-labeled carbon source. Metabolic flux is determined by nonlinear fitting of a metabolic model to the isotopic labeling enrichment of intracellular metabolites measured by mass spectrometry. Whereas (13)C-MFA is conventionally performed under isotopically constant conditions, isotopically nonstationary (13)C metabolic flux analysis (INST-(13)C-MFA) has recently been developed for flux analysis of cells with photosynthetic activity and cells at a quasi-steady metabolic state (e.g., primary cells or microorganisms under stationary phase). Here, the development of a novel open source software for INST-(13)C-MFA on the Windows platform is reported. OpenMebius (Open source software for Metabolic flux analysis) provides the function of autogenerating metabolic models for simulating isotopic labeling enrichment from a user-defined configuration worksheet. Analysis using simulated data demonstrated the applicability of OpenMebius for INST-(13)C-MFA. Confidence intervals determined by INST-(13)C-MFA were less than those determined by conventional methods, indicating the potential of INST-(13)C-MFA for precise metabolic flux analysis. OpenMebius is the open source software for the general application of INST-(13)C-MFA.

  12. Software Productivity of Field Experiments Using the Mobile Agents Open Architecture with Workflow Interoperability

    NASA Technical Reports Server (NTRS)

    Clancey, William J.; Lowry, Michael R.; Nado, Robert Allen; Sierhuis, Maarten

    2011-01-01

    We analyzed a series of ten systematically developed surface exploration systems that integrated a variety of hardware and software components. Design, development, and testing data suggest that incremental buildup of an exploration system for long-duration capabilities is facilitated by an open architecture with appropriate-level APIs, specifically designed to facilitate integration of new components. This improves software productivity by reducing changes required for reconfiguring an existing system.

  13. A Legal Guide for the Software Developer.

    ERIC Educational Resources Information Center

    Minnesota Small Business Assistance Office, St. Paul.

    This booklet has been prepared to familiarize the inventor, creator, or developer of a new computer software product or software invention with the basic legal issues involved in developing, protecting, and distributing the software in the United States. Basic types of software protection and related legal matters are discussed in detail,…

  14. Conceptual Architecture of Building Energy Management Open Source Software (BEMOSS)

    SciTech Connect

    Khamphanchai, Warodom; Saha, Avijit; Rathinavel, Kruthika; Kuzlu, Murat; Pipattanasomporn, Manisa; Rahman, Saifur; Akyol, Bora A.; Haack, Jereme N.

    2014-12-01

    The objective of this paper is to present a conceptual architecture of a Building Energy Management Open Source Software (BEMOSS) platform. The proposed BEMOSS platform is expected to improve sensing and control of equipment in small- and medium-sized buildings, reduce energy consumption and help implement demand response (DR). It aims to offer: scalability, robustness, plug and play, open protocol, interoperability, cost-effectiveness, as well as local and remote monitoring. In this paper, four essential layers of BEMOSS software architecture -- namely User Interface, Application and Data Management, Operating System and Framework, and Connectivity layers -- are presented. A laboratory test bed to demonstrate the functionality of BEMOSS located at the Advanced Research Institute of Virginia Tech is also briefly described.

  15. OpenMS: a flexible open-source software platform for mass spectrometry data analysis.

    PubMed

    Röst, Hannes L; Sachsenberg, Timo; Aiche, Stephan; Bielow, Chris; Weisser, Hendrik; Aicheler, Fabian; Andreotti, Sandro; Ehrlich, Hans-Christian; Gutenbrunner, Petra; Kenar, Erhan; Liang, Xiao; Nahnsen, Sven; Nilse, Lars; Pfeuffer, Julianus; Rosenberger, George; Rurik, Marc; Schmitt, Uwe; Veit, Johannes; Walzer, Mathias; Wojnar, David; Wolski, Witold E; Schilling, Oliver; Choudhary, Jyoti S; Malmström, Lars; Aebersold, Ruedi; Reinert, Knut; Kohlbacher, Oliver

    2016-08-30

    High-resolution mass spectrometry (MS) has become an important tool in the life sciences, contributing to the diagnosis and understanding of human diseases, elucidating biomolecular structural information and characterizing cellular signaling networks. However, the rapid growth in the volume and complexity of MS data makes transparent, accurate and reproducible analysis difficult. We present OpenMS 2.0 (http://www.openms.de), a robust, open-source, cross-platform software specifically designed for the flexible and reproducible analysis of high-throughput MS data. The extensible OpenMS software implements common mass spectrometric data processing tasks through a well-defined application programming interface in C++ and Python and through standardized open data formats. OpenMS additionally provides a set of 185 tools and ready-made workflows for common mass spectrometric data processing tasks, which enable users to perform complex quantitative mass spectrometric analyses with ease.

  16. GIS-Based Noise Simulation Open Source Software: N-GNOIS

    NASA Astrophysics Data System (ADS)

    Vijay, Ritesh; Sharma, A.; Kumar, M.; Shende, V.; Chakrabarti, T.; Gupta, Rajesh

    2015-12-01

    Geographical information system (GIS)-based noise simulation software (N-GNOIS) has been developed to simulate the noise scenario due to point and mobile sources considering the impact of geographical features and meteorological parameters. These have been addressed in the software through attenuation modules of atmosphere, vegetation and barrier. N-GNOIS is a user friendly, platform-independent and open geospatial consortia (OGC) compliant software. It has been developed using open source technology (QGIS) and open source language (Python). N-GNOIS has unique features like cumulative impact of point and mobile sources, building structure and honking due to traffic. Honking is the most common phenomenon in developing countries and is frequently observed on any type of roads. N-GNOIS also helps in designing physical barrier and vegetation cover to check the propagation of noise and acts as a decision making tool for planning and management of noise component in environmental impact assessment (EIA) studies.

  17. Free and Open Source Software for Geospatial in the field of planetary science

    NASA Astrophysics Data System (ADS)

    Frigeri, A.

    2012-12-01

    Information technology applied to geospatial analyses has spread quickly in the last ten years. The availability of OpenData and data from collaborative mapping projects increased the interest on tools, procedures and methods to handle spatially-related information. Free Open Source Software projects devoted to geospatial data handling are gaining a good success as the use of interoperable formats and protocols allow the user to choose what pipeline of tools and libraries is needed to solve a particular task, adapting the software scene to his specific problem. In particular, the Free Open Source model of development mimics the scientific method very well, and researchers should be naturally encouraged to take part to the development process of these software projects, as this represent a very agile way to interact among several institutions. When it comes to planetary sciences, geospatial Free Open Source Software is gaining a key role in projects that commonly involve different subjects in an international scenario. Very popular software suites for processing scientific mission data (for example, ISIS) and for navigation/planning (SPICE) are being distributed along with the source code and the interaction between user and developer is often very strict, creating a continuum between these two figures. A very widely spread library for handling geospatial data (GDAL) has started to support planetary data from the Planetary Data System, and recent contributions enabled the support to other popular data formats used in planetary science, as the Vicar one. The use of Geographic Information System in planetary science is now diffused, and Free Open Source GIS, open GIS formats and network protocols allow to extend existing tools and methods developed to solve Earth based problems, also to the case of the study of solar system bodies. A day in the working life of a researcher using Free Open Source Software for geospatial will be presented, as well as benefits and

  18. OpenPET Hardware, Firmware, Software, and Board Design Files

    SciTech Connect

    Abu-Nimeh, Faisal; Choong, Woon-Sengq; Moses, William W.; Peng, Qiyu

    2016-03-29

    OpenPET is an open source, flexible, high-performance, and modular data acquisition system for a variety of applications. The OpenPET electronics are capable of reading analog voltage or current signals from a wide variety of sensors. The electronics boards make extensive use of field programmable gate arrays (FPGAs) to provide flexibility and scalability. Firmware and software for the FPGAs and computer are used to control and acquire data from the system. The command and control flow is similar to the data flow, however, the commands are initiated from the computer similar to a tree topology (i.e., from top-to-bottom). Each node in the tree discovers its parent and children, and all addresses are configured accordingly. A user (or a script) initiates a command from the computer. This command will be translated and encoded to the corresponding child (e.g., SB, MB, DB, etc.). Consecutively, each node will pass the command to its corresponding child(ren) by looking at the destination address. Finally, once the command reaches its desired destination(s) the corresponding node(s) execute(s) the command and send(s) a reply, if required. All the firmware, software, and the electronics board design files are distributed through the OpenPET website (http://openpet.lbl.gov).

  19. Math Description Engine Software Development Kit

    NASA Technical Reports Server (NTRS)

    Shelton, Robert O.; Smith, Stephanie L.; Dexter, Dan E.; Hodgson, Terry R.

    2010-01-01

    The Math Description Engine Software Development Kit (MDE SDK) can be used by software developers to make computer-rendered graphs more accessible to blind and visually-impaired users. The MDE SDK generates alternative graph descriptions in two forms: textual descriptions and non-verbal sound renderings, or sonification. It also enables display of an animated trace of a graph sonification on a visual graph component, with color and line-thickness options for users having low vision or color-related impairments. A set of accessible graphical user interface widgets is provided for operation by end users and for control of accessible graph displays. Version 1.0 of the MDE SDK generates text descriptions for 2D graphs commonly seen in math and science curriculum (and practice). The mathematically rich text descriptions can also serve as a virtual math and science assistant for blind and sighted users, making graphs more accessible for everyone. The MDE SDK has a simple application programming interface (API) that makes it easy for programmers and Web-site developers to make graphs accessible with just a few lines of code. The source code is written in Java for cross-platform compatibility and to take advantage of Java s built-in support for building accessible software application interfaces. Compiled-library and NASA Open Source versions are available with API documentation and Programmer s Guide at http:/ / prim e.jsc.n asa. gov.

  20. Open source projects in software engineering education: a mapping study

    NASA Astrophysics Data System (ADS)

    Nascimento, Debora M. C.; Almeida Bittencourt, Roberto; Chavez, Christina

    2015-01-01

    Context: It is common practice in academia to have students work with "toy" projects in software engineering (SE) courses. One way to make such courses more realistic and reduce the gap between academic courses and industry needs is getting students involved in open source projects (OSP) with faculty supervision. Objective: This study aims to summarize the literature on how OSP have been used to facilitate students' learning of SE. Method: A systematic mapping study was undertaken by identifying, filtering and classifying primary studies using a predefined strategy. Results: 72 papers were selected and classified. The main results were: (a) most studies focused on comprehensive SE courses, although some dealt with specific areas; (b) the most prevalent approach was the traditional project method; (c) studies' general goals were: learning SE concepts and principles by using OSP, learning open source software or both; (d) most studies tried out ideas in regular courses within the curriculum; (e) in general, students had to work with predefined projects; (f) there was a balance between approaches where instructors had either inside control or no control on the activities performed by students; (g) when learning was assessed, software artefacts, reports and presentations were the main instruments used by teachers, while surveys were widely used for students' self-assessment; (h) most studies were published in the last seven years. Conclusions: The resulting map gives an overview of the existing initiatives in this context and shows gaps where further research can be pursued.

  1. Global review of open access risk assessment software packages valid for global or continental scale analysis

    NASA Astrophysics Data System (ADS)

    Daniell, James; Simpson, Alanna; Gunasekara, Rashmin; Baca, Abigail; Schaefer, Andreas; Ishizawa, Oscar; Murnane, Rick; Tijssen, Annegien; Deparday, Vivien; Forni, Marc; Himmelfarb, Anne; Leder, Jan

    2015-04-01

    Over the past few decades, a plethora of open access software packages for the calculation of earthquake, volcanic, tsunami, storm surge, wind and flood have been produced globally. As part of the World Bank GFDRR Review released at the Understanding Risk 2014 Conference, over 80 such open access risk assessment software packages were examined. Commercial software was not considered in the evaluation. A preliminary analysis was used to determine whether the 80 models were currently supported and if they were open access. This process was used to select a subset of 31 models that include 8 earthquake models, 4 cyclone models, 11 flood models, and 8 storm surge/tsunami models for more detailed analysis. By using multi-criteria analysis (MCDA) and simple descriptions of the software uses, the review allows users to select a few relevant software packages for their own testing and development. The detailed analysis evaluated the models on the basis of over 100 criteria and provides a synopsis of available open access natural hazard risk modelling tools. In addition, volcano software packages have since been added making the compendium of risk software tools in excess of 100. There has been a huge increase in the quality and availability of open access/source software over the past few years. For example, private entities such as Deltares now have an open source policy regarding some flood models (NGHS). In addition, leaders in developing risk models in the public sector, such as Geoscience Australia (EQRM, TCRM, TsuDAT, AnuGA) or CAPRA (ERN-Flood, Hurricane, CRISIS2007 etc.), are launching and/or helping many other initiatives. As we achieve greater interoperability between modelling tools, we will also achieve a future wherein different open source and open access modelling tools will be increasingly connected and adapted towards unified multi-risk model platforms and highly customised solutions. It was seen that many software tools could be improved by enabling user

  2. YAM- A Framework for Rapid Software Development

    NASA Technical Reports Server (NTRS)

    Jain, Abhinandan; Biesiadecki, Jeffrey

    2006-01-01

    YAM is a software development framework with tools for facilitating the rapid development and integration of software in a concurrent software development environment. YAM provides solutions for thorny development challenges associated with software reuse, managing multiple software configurations, the development of software product-lines, multiple platform development and build management. YAM uses release-early, release-often development cycles to allow developers to incrementally integrate their changes into the system on a continual basis. YAM facilitates the creation and merging of branches to support the isolated development of immature software to avoid impacting the stability of the development effort. YAM uses modules and packages to organize and share software across multiple software products. It uses the concepts of link and work modules to reduce sandbox setup times even when the code-base is large. One side-benefit is the enforcement of a strong module-level encapsulation of a module s functionality and interface. This increases design transparency, system stability as well as software reuse. YAM is in use by several mid-size software development teams including ones developing mission-critical software.

  3. Experimental Internet Environment Software Development

    NASA Technical Reports Server (NTRS)

    Maddux, Gary A.

    1998-01-01

    Geographically distributed project teams need an Internet based collaborative work environment or "Intranet." The Virtual Research Center (VRC) is an experimental Intranet server that combines several services such as desktop conferencing, file archives, on-line publishing, and security. Using the World Wide Web (WWW) as a shared space paradigm, the Graphical User Interface (GUI) presents users with images of a lunar colony. Each project has a wing of the colony and each wing has a conference room, library, laboratory, and mail station. In FY95, the VRC development team proved the feasibility of this shared space concept by building a prototype using a Netscape commerce server and several public domain programs. Successful demonstrations of the prototype resulted in approval for a second phase. Phase 2, documented by this report, will produce a seamlessly integrated environment by introducing new technologies such as Java and Adobe Web Links to replace less efficient interface software.

  4. Note: Tormenta: An open source Python-powered control software for camera based optical microscopy

    NASA Astrophysics Data System (ADS)

    Barabas, Federico M.; Masullo, Luciano A.; Stefani, Fernando D.

    2016-12-01

    Until recently, PC control and synchronization of scientific instruments was only possible through closed-source expensive frameworks like National Instruments' LabVIEW. Nowadays, efficient cost-free alternatives are available in the context of a continuously growing community of open-source software developers. Here, we report on Tormenta, a modular open-source software for the control of camera-based optical microscopes. Tormenta is built on Python, works on multiple operating systems, and includes some key features for fluorescence nanoscopy based on single molecule localization.

  5. Note: Tormenta: An open source Python-powered control software for camera based optical microscopy.

    PubMed

    Barabas, Federico M; Masullo, Luciano A; Stefani, Fernando D

    2016-12-01

    Until recently, PC control and synchronization of scientific instruments was only possible through closed-source expensive frameworks like National Instruments' LabVIEW. Nowadays, efficient cost-free alternatives are available in the context of a continuously growing community of open-source software developers. Here, we report on Tormenta, a modular open-source software for the control of camera-based optical microscopes. Tormenta is built on Python, works on multiple operating systems, and includes some key features for fluorescence nanoscopy based on single molecule localization.

  6. Case study on selecting an environment for software development

    SciTech Connect

    Doak, J.

    1997-05-01

    To explore the various issues and options surrounding software development, the author has selected a specific Safeguards Systems Group (NIS-7) project to serve as a case study. The opinions expressed are solely those of the author and any reference to {open_quotes}we{close_quotes} or {open_quotes}our{close_quotes} refers to this single author. The goal of the selected project is to produce software that can accurately analyze data from sensors in tanks containing solutions of nuclear material (solution monitoring). This project focuses on data from Japanese reprocessing facilities. The software is to be used by International Atomic Energy Agency (IAEA) inspectors back at headquarters in Vienna after obtaining data from a site. I feel that the ideas presented in this paper may be applicable to numerous software developers whose project requirements are similar to those for this project. Two considerations for developing software for use by others are discussed. (1) What software tools should be used during the development process? (2) What is the most effective way of distributing the software and documentation? The requirements for the software environment and distribution of software and documentation include the following: portability; cross-platform compatibility; graphical user interface and builder, creating modular/reusable software components; generic libraries; environment should facilitate development of solutions to large real-world problems; no special privileges are necessary to access the software and documentation; software should be visible to a large number of people; documentation should be in a format that everyone can read and should support equations and graphics; transmission of software and documentation should be hands-off.

  7. Software requirements: Guidance and control software development specification

    NASA Technical Reports Server (NTRS)

    Withers, B. Edward; Rich, Don C.; Lowman, Douglas S.; Buckland, R. C.

    1990-01-01

    The software requirements for an implementation of Guidance and Control Software (GCS) are specified. The purpose of the GCS is to provide guidance and engine control to a planetary landing vehicle during its terminal descent onto a planetary surface and to communicate sensory information about that vehicle and its descent to some receiving device. The specification was developed using the structured analysis for real time system specification methodology by Hatley and Pirbhai and was based on a simulation program used to study the probability of success of the 1976 Viking Lander missions to Mars. Three versions of GCS are being generated for use in software error studies.

  8. Modular Open-Source Software for Item Factor Analysis

    PubMed Central

    Pritikin, Joshua N.; Hunter, Micheal D.; Boker, Steven

    2015-01-01

    This paper introduces an Item Factor Analysis (IFA) module for OpenMx, a free, open-source, and modular statistical modeling package that runs within the R programming environment on GNU/Linux, Mac OS X, and Microsoft Windows. The IFA module offers a novel model specification language that is well suited to programmatic generation and manipulation of models. Modular organization of the source code facilitates the easy addition of item models, item parameter estimation algorithms, optimizers, test scoring algorithms, and fit diagnostics all within an integrated framework. Three short example scripts are presented for fitting item parameters, latent distribution parameters, and a multiple group model. The availability of both IFA and structural equation modeling in the same software is a step toward the unification of these two methodologies. PMID:27065479

  9. Modular Open-Source Software for Item Factor Analysis.

    PubMed

    Pritikin, Joshua N; Hunter, Micheal D; Boker, Steven

    2015-06-01

    This paper introduces an Item Factor Analysis (IFA) module for OpenMx, a free, open-source, and modular statistical modeling package that runs within the R programming environment on GNU/Linux, Mac OS X, and Microsoft Windows. The IFA module offers a novel model specification language that is well suited to programmatic generation and manipulation of models. Modular organization of the source code facilitates the easy addition of item models, item parameter estimation algorithms, optimizers, test scoring algorithms, and fit diagnostics all within an integrated framework. Three short example scripts are presented for fitting item parameters, latent distribution parameters, and a multiple group model. The availability of both IFA and structural equation modeling in the same software is a step toward the unification of these two methodologies.

  10. Learning Human Aspects of Collaborative Software Development

    ERIC Educational Resources Information Center

    Hadar, Irit; Sherman, Sofia; Hazzan, Orit

    2008-01-01

    Collaboration has become increasingly widespread in the software industry as systems have become larger and more complex, adding human complexity to the technological complexity already involved in developing software systems. To deal with this complexity, human-centric software development methods, such as Extreme Programming and other agile…

  11. Modular Infrastructure for Rapid Flight Software Development

    NASA Technical Reports Server (NTRS)

    Pires, Craig

    2010-01-01

    This slide presentation reviews the use of modular infrastructure to assist in the development of flight software. A feature of this program is the use of model based approach for application unique software. A review of two programs that this approach was use on are: the development of software for Hover Test Vehicle (HTV), and Lunar Atmosphere and Dust Environment Experiment (LADEE).

  12. The SCEC/UseIT Intern Program: Creating Open-Source Visualization Software Using Diverse Resources

    NASA Astrophysics Data System (ADS)

    Francoeur, H.; Callaghan, S.; Perry, S.; Jordan, T.

    2004-12-01

    The Southern California Earthquake Center undergraduate IT intern program (SCEC UseIT) conducts IT research to benefit collaborative earth science research. Through this program, interns have developed real-time, interactive, 3D visualization software using open-source tools. Dubbed LA3D, a distribution of this software is now in use by the seismic community. LA3D enables the user to interactively view Southern California datasets and models of importance to earthquake scientists, such as faults, earthquakes, fault blocks, digital elevation models, and seismic hazard maps. LA3D is now being extended to support visualizations anywhere on the planet. The new software, called SCEC-VIDEO (Virtual Interactive Display of Earth Objects), makes use of a modular, plugin-based software architecture which supports easy development and integration of new data sets. Currently SCEC-VIDEO is in beta testing, with a full open-source release slated for the future. Both LA3D and SCEC-VIDEO were developed using a wide variety of software technologies. These, which included relational databases, web services, software management technologies, and 3-D graphics in Java, were necessary to integrate the heterogeneous array of data sources which comprise our software. Currently the interns are working to integrate new technologies and larger data sets to increase software functionality and value. In addition, both LA3D and SCEC-VIDEO allow the user to script and create movies. Thus program interns with computer science backgrounds have been writing software while interns with other interests, such as cinema, geology, and education, have been making movies that have proved of great use in scientific talks, media interviews, and education. Thus, SCEC UseIT incorporates a wide variety of scientific and human resources to create products of value to the scientific and outreach communities. The program plans to continue with its interdisciplinary approach, increasing the relevance of the

  13. Captivating Open University Students with Online Literature Search Tutorials Created Using Screen Capture Software

    ERIC Educational Resources Information Center

    Wales, Tim; Robertson, Penny

    2008-01-01

    Purpose: The aim of this paper is to share the experiences and challenges faced by the Open University Library (OUL) in using screen capture software to develop online literature search tutorials. Design/methodology/approach: A summary of information literacy support at the OUL is provided as background information to explain the decision to…

  14. Developing Software for Corpus Research

    ERIC Educational Resources Information Center

    Mason, Oliver

    2008-01-01

    Despite the central role of the computer in corpus research, programming is generally not seen as a core skill within corpus linguistics. As a consequence, limitations in software for text and corpus analysis slow down the progress of research while analysts often have to rely on third party software or even manual data analysis if no suitable…

  15. The role of open-source software in innovation and standardization in radiology.

    PubMed

    Erickson, Bradley J; Langer, Steve; Nagy, Paul

    2005-11-01

    The use of open-source software (OSS), in which developers release the source code to applications they have developed, is popular in the software industry. This is done to allow others to modify and improve software (which may or may not be shared back to the community) and to allow others to learn from the software. Radiology was an early participant in this model, supporting OSS that implemented the ACR-National Electrical Manufacturers Association (now Digital Imaging and Communications in Medicine) standard for medical image communications. In radiology and in other fields, OSS has promoted innovation and the adoption of standards. Popular OSS is of high quality because access to source code allows many people to identify and resolve errors. Open-source software is analogous to the peer-review scientific process: one must be able to see and reproduce results to understand and promote what is shared. The authors emphasize that support for OSS need not threaten vendors; most vendors embrace and benefit from standards. Open-source development does not replace vendors but more clearly defines their roles, typically focusing on areas in which proprietary differentiators benefit customers and on professional services such as implementation planning and service. Continued support for OSS is essential for the success of our field.

  16. Building a Snow Data Management System using Open Source Software (and IDL)

    NASA Astrophysics Data System (ADS)

    Goodale, C. E.; Mattmann, C. A.; Ramirez, P.; Hart, A. F.; Painter, T.; Zimdars, P. A.; Bryant, A.; Brodzik, M.; Skiles, M.; Seidel, F. C.; Rittger, K. E.

    2012-12-01

    At NASA's Jet Propulsion Laboratory free and open source software is used everyday to support a wide range of projects, from planetary to climate to research and development. In this abstract I will discuss the key role that open source software has played in building a robust science data processing pipeline for snow hydrology research, and how the system is also able to leverage programs written in IDL, making JPL's Snow Data System a hybrid of open source and proprietary software. Main Points: - The Design of the Snow Data System (illustrate how the collection of sub-systems are combined to create a complete data processing pipeline) - Discuss the Challenges of moving from a single algorithm on a laptop, to running 100's of parallel algorithms on a cluster of servers (lesson's learned) - Code changes - Software license related challenges - Storage Requirements - System Evolution (from data archiving, to data processing, to data on a map, to near-real-time products and maps) - Road map for the next 6 months (including how easily we re-used the snowDS code base to support the Airborne Snow Observatory Mission) Software in Use and their Software Licenses: IDL - Used for pre and post processing of data. Licensed under a proprietary software license held by Excelis. Apache OODT - Used for data management and workflow processing. Licensed under the Apache License Version 2. GDAL - Geospatial Data processing library used for data re-projection currently. Licensed under the X/MIT license. GeoServer - WMS Server. Licensed under the General Public License Version 2.0 Leaflet.js - Javascript web mapping library. Licensed under the Berkeley Software Distribution License. Python - Glue code and miscellaneous data processing support. Licensed under the Python Software Foundation License. Perl - Script wrapper for running the SCAG algorithm. Licensed under the General Public License Version 3. PHP - Front-end web application programming. Licensed under the PHP License Version

  17. Teaching Agile Software Development: A Case Study

    ERIC Educational Resources Information Center

    Devedzic, V.; Milenkovic, S. R.

    2011-01-01

    This paper describes the authors' experience of teaching agile software development to students of computer science, software engineering, and other related disciplines, and comments on the implications of this and the lessons learned. It is based on the authors' eight years of experience in teaching agile software methodologies to various groups…

  18. Effective Software Engineering Leadership for Development Programs

    ERIC Educational Resources Information Center

    Cagle West, Marsha

    2010-01-01

    Software is a critical component of systems ranging from simple consumer appliances to complex health, nuclear, and flight control systems. The development of quality, reliable, and effective software solutions requires the incorporation of effective software engineering processes and leadership. Processes, approaches, and methodologies for…

  19. Guidance and Control Software Project Data - Volume 2: Development Documents

    NASA Technical Reports Server (NTRS)

    Hayhurst, Kelly J. (Editor)

    2008-01-01

    The Guidance and Control Software (GCS) project was the last in a series of software reliability studies conducted at Langley Research Center between 1977 and 1994. The technical results of the GCS project were recorded after the experiment was completed. Some of the support documentation produced as part of the experiment, however, is serving an unexpected role far beyond its original project context. Some of the software used as part of the GCS project was developed to conform to the RTCA/DO-178B software standard, "Software Considerations in Airborne Systems and Equipment Certification," used in the civil aviation industry. That standard requires extensive documentation throughout the software development life cycle, including plans, software requirements, design and source code, verification cases and results, and configuration management and quality control data. The project documentation that includes this information is open for public scrutiny without the legal or safety implications associated with comparable data from an avionics manufacturer. This public availability has afforded an opportunity to use the GCS project documents for DO-178B training. This report provides a brief overview of the GCS project, describes the 4-volume set of documents and the role they are playing in training, and includes the development documents from the GCS project. Volume 2 contains three appendices: A. Guidance and Control Software Development Specification; B. Design Description for the Pluto Implementation of the Guidance and Control Software; and C. Source Code for the Pluto Implementation of the Guidance and Control Software

  20. Continuous Software Integration and Quality Control during Software Development

    NASA Astrophysics Data System (ADS)

    Ettl, M.; Neidhardt, A.; Brisken, W.; Dassing, R.

    2012-12-01

    Modern software has to be stable, portable, fast, and reliable. This requires a sophisticated infrastructure supporting and providing the developers with additional information about the state and the quality of the project. That is why we have created a centralized software repository, where the whole code-base is managed and version controlled on a centralized server. Based on this, a hierarchical build system has been developed where each project and their sub-projects can be compiled by simply calling the top level Makefile. On the top of this, a nightly build system has been created where the top level Makefiles of each project are called every night. The results of the build including the compiler warnings are reported to the developers using generated HTML pages. In addition, all the source code is automatically checked using a static code analysis tool, called "cppcheck". This tool produces warnings, similar to those of a compiler, but more pedantic. The reports of this analysis are translated to HTML and reported to the developers similar to the nightly builds. Armed with this information,the developers can discover issues in their projects at an early development stage. In combination it reduces the number of possible issues in our software to ensure quality of our projects at different development stages. These checks are also offered to the community. They are currently used within the DiFX software correlator project.

  1. Insights into software development in Japan

    NASA Technical Reports Server (NTRS)

    Duvall, Lorraine M.

    1992-01-01

    The interdependence of the U.S.-Japanese economies makes it imperative that we in the United States understand how business and technology developments take place in Japan. We can gain insight into these developments in software engineering by studying the context in which Japanese software is developed, the practices that are used, the problems encountered, the setting surrounding these problems, and the resolution of these problems. Context includes the technological and sociological characteristics of the software development environment, the software processes applied, personnel involved in the development process, and the corporate and social culture surrounding the development. Presented in this paper is a summary of results of a study that addresses these issues. Data for this study was collected during a three month visit to Japan where the author interviewed 20 software managers representing nine companies involved in developing software in Japan. These data are compared to similar data from the United States in which 12 managers from five companies were interviewed.

  2. Developing Open Courses.

    ERIC Educational Resources Information Center

    Parer, Michael S., Ed.

    This collection of 13 articles contains the reflections of experienced course developers on a particular course that illustrates the process of constructing flagship distance education programs. "Educational Developers in Action--A Series of Tales from the Mud" (Michael Parer) is an introduction that discusses the technology of distance…

  3. Open3DALIGN: an open-source software aimed at unsupervised ligand alignment.

    PubMed

    Tosco, Paolo; Balle, Thomas; Shiri, Fereshteh

    2011-08-01

    An open-source, cross-platform software aimed at conformer generation and unsupervised rigid-body molecular alignment is presented. Different algorithms have been implemented to perform single and multi-conformation superimpositions on one or more templates. Alignments can be accomplished by matching pharmacophores, heavy atoms or a combination of the two. All methods have been successfully validated on eight comprehensive datasets previously gathered by Sutherland and co-workers. High computational performance has been attained through efficient parallelization of the code. The unsupervised nature of the alignment algorithms, together with its scriptable interface, make Open3DALIGN an ideal component of high-throughput, automated cheminformatics workflows.

  4. Improving Data Catalogs with Free and Open Source Software

    NASA Astrophysics Data System (ADS)

    Schweitzer, R.; Hankin, S.; O'Brien, K.

    2013-12-01

    The Global Earth Observation Integrated Data Environment (GEO-IDE) is NOAA's effort to successfully integrate data and information with partners in the national US-Global Earth Observation System (US-GEO) and the international Global Earth Observation System of Systems (GEOSS). As part of the GEO-IDE, the Unified Access Framework (UAF) is working to build momentum towards the goal of increased data integration and interoperability. The UAF project is moving towards this goal with an approach that includes leveraging well known and widely used standards, as well as free and open source software. The UAF project shares the widely held conviction that the use of data standards is a key ingredient necessary to achieve interoperability. Many community-based consensus standards fail, though, due to poor compliance. Compliance problems emerge for many reasons: because the standards evolve through versions, because documentation is ambiguous or because individual data providers find the standard inadequate as-is to meet their special needs. In addition, minimalist use of standards will lead to a compliant service, but one which is of low quality. In this presentation, we will be discussing the UAF effort to build a catalog cleaning tool which is designed to crawl THREDDS catalogs, analyze the data available, and then build a 'clean' catalog of data which is standards compliant and has a uniform set of data access services available. These data services include, among others, OPeNDAP, Web Coverage Service (WCS) and Web Mapping Service (WMS). We will also discuss how we are utilizing free and open source software and services to both crawl, analyze and build the clean data catalog, as well as our efforts to help data providers improve their data catalogs. We'll discuss the use of open source software such as DataNucleus, Thematic Realtime Environmental Distributed Data Services (THREDDS), ncISO and the netCDF Java Common Data Model (CDM). We'll also demonstrate how we are

  5. The Geoinformatica free and open source software stack

    NASA Astrophysics Data System (ADS)

    Jolma, A.

    2012-04-01

    The Geoinformatica free and open source software (FOSS) stack is based mainly on three established FOSS components, namely GDAL, GTK+, and Perl. GDAL provides access to a very large selection of geospatial data formats and data sources, a generic geospatial data model, and a large collection of geospatial analytical and processing functionality. GTK+ and the Cairo graphics library provide generic graphics and graphical user interface capabilities. Perl is a programming language, for which there is a very large set of FOSS modules for a wide range of purposes and which can be used as an integrative tool for building applications. In the Geoinformatica stack, data storages such as FOSS RDBMS PostgreSQL with its geospatial extension PostGIS can be used below the three above mentioned components. The top layer of Geoinformatica consists of a C library and several Perl modules. The C library comprises a general purpose raster algebra library, hydrological terrain analysis functions, and visualization code. The Perl modules define a generic visualized geospatial data layer and subclasses for raster and vector data and graphs. The hydrological terrain functions are already rather old and they suffer for example from the requirement of in-memory rasters. Newer research conducted using the platform include basic geospatial simulation modeling, visualization of ecological data, linking with a Bayesian network engine for spatial risk assessment in coastal areas, and developing standards-based distributed water resources information systems in Internet. The Geoinformatica stack constitutes a platform for geospatial research, which is targeted towards custom analytical tools, prototyping and linking with external libraries. Writing custom analytical tools is supported by the Perl language and the large collection of tools that are available especially in GDAL and Perl modules. Prototyping is supported by the GTK+ library, the GUI tools, and the support for object

  6. OpenWIS Software for the WIS and INSPIRE

    NASA Astrophysics Data System (ADS)

    Roumilhac, Jacques

    2013-04-01

    The World Meteorological Organization (WMO) has been working for several years towards upgrading its global infrastructure to support all of its international programmes of work, both operational and research-based, to collect, share and disseminate information. The new infrastructure is called the WIS, the WMO Information System, and identifies three top level functions. These are: • GISC: Global Information System Centre; • DCPC: Data Collection and Production Centre; • NC: National Centre. All three functions contribute to the circulation of priority data, system wide security, monitoring and implementation of WMO data policies. GISCs and DCPCs allow the Discovery Access and Retrieval of data, products and services offered by WIS Centres, but GISCs offer a global view of this information and provide distributed and resilient access to critical data and products. Météo-France, the UK Met Office, the Australian Bureau of Meteorology, the Korean Meteorological Administration, and Meteo France International have implemented the OpenWIS software, coupled with their existing systems, to perform the three functions required by the WMO Information System (GISC, DCPC and NC). In particular, the GISC functionality will be shared between the two partners (Meteo France and MetOffice) and will appear as a single GISC to other WMO GISCs. OpenWIS is deployed in an operational environment using the existing private RMDCN Wide Area Network and also support access from the Internet. The functional components of OpenWIS are: • Data Service and its cache of essential data • Metadata Service and its ISO19115 metadata catalogue (synchronisation with other catalogues compliant with OAI-PMH protocol) • Security Service • Monitoring and Control • Portal • External and internal Interfaces Météo France operates disparate dissemination tools. OpenWIS provide a generic interface that Météo France has adapted, covering requests for dissemination and their monitoring

  7. Recommended approach to software development, revision 3

    NASA Technical Reports Server (NTRS)

    Landis, Linda; Waligora, Sharon; Mcgarry, Frank; Pajerski, Rose; Stark, Mike; Johnson, Kevin Orlin; Cover, Donna

    1992-01-01

    Guidelines for an organized, disciplined approach to software development that is based on studies conducted by the Software Engineering Laboratory (SEL) since 1976 are presented. It describes methods and practices for each phase of a software development life cycle that starts with requirements definition and ends with acceptance testing. For each defined life cycle phase, guidelines for the development process and its management, and for the products produced and their reviews are presented.

  8. Manager's handbook for software development, revision 1

    NASA Technical Reports Server (NTRS)

    1990-01-01

    Methods and aids for the management of software development projects are presented. The recommendations are based on analyses and experiences of the Software Engineering Laboratory (SEL) with flight dynamics software development. The management aspects of the following subjects are described: organizing the project, producing a development plan, estimating costs, scheduling, staffing, preparing deliverable documents, using management tools, monitoring the project, conducting reviews, auditing, testing, and certifying.

  9. A glass slipper? For cash-strapped organizations with EMR dreams, open-source software may be a perfect fit.

    PubMed

    Hagland, Mark

    2009-08-01

    Open-source EMR software is a potential, and relatively economical, option for hospital organizations that can't afford proprietary commercial EMR software, or whose leaders want a non-commercial option. While access to VistA's source code is free, any hospital organization seeking to implement commercialized VistA will need assistance from one of the vendors supporting that software. Implementing open-source is a bit closer to self-development than to implementing proprietary, commercial EMR software. CCHIT recently announced it will introduce new channels for certification of open-source EMR software, addressing the concerns of those in healthcare who want to pursue the open-source option while also applying for funding under ARRA-HITECH.

  10. Software development: A paradigm for the future

    NASA Technical Reports Server (NTRS)

    Basili, Victor R.

    1989-01-01

    A new paradigm for software development that treats software development as an experimental activity is presented. It provides built-in mechanisms for learning how to develop software better and reusing previous experience in the forms of knowledge, processes, and products. It uses models and measures to aid in the tasks of characterization, evaluation and motivation. An organization scheme is proposed for separating the project-specific focus from the organization's learning and reuse focuses of software development. The implications of this approach for corporations, research and education are discussed and some research activities currently underway at the University of Maryland that support this approach are presented.

  11. TMT approach to observatory software development process

    NASA Astrophysics Data System (ADS)

    Buur, Hanne; Subramaniam, Annapurni; Gillies, Kim; Dumas, Christophe; Bhatia, Ravinder

    2016-07-01

    The purpose of the Observatory Software System (OSW) is to integrate all software and hardware components of the Thirty Meter Telescope (TMT) to enable observations and data capture; thus it is a complex software system that is defined by four principal software subsystems: Common Software (CSW), Executive Software (ESW), Data Management System (DMS) and Science Operations Support System (SOSS), all of which have interdependencies with the observatory control systems and data acquisition systems. Therefore, the software development process and plan must consider dependencies to other subsystems, manage architecture, interfaces and design, manage software scope and complexity, and standardize and optimize use of resources and tools. Additionally, the TMT Observatory Software will largely be developed in India through TMT's workshare relationship with the India TMT Coordination Centre (ITCC) and use of Indian software industry vendors, which adds complexity and challenges to the software development process, communication and coordination of activities and priorities as well as measuring performance and managing quality and risk. The software project management challenge for the TMT OSW is thus a multi-faceted technical, managerial, communications and interpersonal relations challenge. The approach TMT is using to manage this multifaceted challenge is a combination of establishing an effective geographically distributed software team (Integrated Product Team) with strong project management and technical leadership provided by the TMT Project Office (PO) and the ITCC partner to manage plans, process, performance, risk and quality, and to facilitate effective communications; establishing an effective cross-functional software management team composed of stakeholders, OSW leadership and ITCC leadership to manage dependencies and software release plans, technical complexities and change to approved interfaces, architecture, design and tool set, and to facilitate

  12. Towards an Open, Distributed Software Architecture for UxS Operations

    NASA Technical Reports Server (NTRS)

    Cross, Charles D.; Motter, Mark A.; Neilan, James H.; Qualls, Garry D.; Rothhaar, Paul M.; Tran, Loc; Trujillo, Anna C.; Allen, B. Danette

    2015-01-01

    To address the growing need to evaluate, test, and certify an ever expanding ecosystem of UxS platforms in preparation of cultural integration, NASA Langley Research Center's Autonomy Incubator (AI) has taken on the challenge of developing a software framework in which UxS platforms developed by third parties can be integrated into a single system which provides evaluation and testing, mission planning and operation, and out-of-the-box autonomy and data fusion capabilities. This software framework, named AEON (Autonomous Entity Operations Network), has two main goals. The first goal is the development of a cross-platform, extensible, onboard software system that provides autonomy at the mission execution and course-planning level, a highly configurable data fusion framework sensitive to the platform's available sensor hardware, and plug-and-play compatibility with a wide array of computer systems, sensors, software, and controls hardware. The second goal is the development of a ground control system that acts as a test-bed for integration of the proposed heterogeneous fleet, and allows for complex mission planning, tracking, and debugging capabilities. The ground control system should also be highly extensible and allow plug-and-play interoperability with third party software systems. In order to achieve these goals, this paper proposes an open, distributed software architecture which utilizes at its core the Data Distribution Service (DDS) standards, established by the Object Management Group (OMG), for inter-process communication and data flow. The design decisions proposed herein leverage the advantages of existing robotics software architectures and the DDS standards to develop software that is scalable, high-performance, fault tolerant, modular, and readily interoperable with external platforms and software.

  13. XSEOS: An Open Software for Chemical Engineering Thermodynamics

    ERIC Educational Resources Information Center

    Castier, Marcelo

    2008-01-01

    An Excel add-in--XSEOS--that implements several excess Gibbs free energy models and equations of state has been developed for educational use. Several traditional and modern thermodynamic models are available in the package with a user-friendly interface. XSEOS has open code, is freely available, and should be useful for instructors and students…

  14. Harvesting, Integrating and Distributing Large Open Geospatial Datasets Using Free and Open-Source Software

    NASA Astrophysics Data System (ADS)

    Oliveira, Ricardo; Moreno, Rafael

    2016-06-01

    Federal, State and Local government agencies in the USA are investing heavily on the dissemination of Open Data sets produced by each of them. The main driver behind this thrust is to increase agencies' transparency and accountability, as well as to improve citizens' awareness. However, not all Open Data sets are easy to access and integrate with other Open Data sets available even from the same agency. The City and County of Denver Open Data Portal distributes several types of geospatial datasets, one of them is the city parcels information containing 224,256 records. Although this data layer contains many pieces of information it is incomplete for some custom purposes. Open-Source Software were used to first collect data from diverse City of Denver Open Data sets, then upload them to a repository in the Cloud where they were processed using a PostgreSQL installation on the Cloud and Python scripts. Our method was able to extract non-spatial information from a `not-ready-to-download' source that could then be combined with the initial data set to enhance its potential use.

  15. Large-scale GW software development

    NASA Astrophysics Data System (ADS)

    Kim, Minjung; Mandal, Subhasish; Mikida, Eric; Jindal, Prateek; Bohm, Eric; Jain, Nikhil; Kale, Laxmikant; Martyna, Glenn; Ismail-Beigi, Sohrab

    Electronic excitations are important in understanding and designing many functional materials. In terms of ab initio methods, the GW and Bethe-Saltpeter Equation (GW-BSE) beyond DFT methods have proved successful in describing excited states in many materials. However, the heavy computational loads and large memory requirements have hindered their routine applicability by the materials physics community. We summarize some of our collaborative efforts to develop a new software framework designed for GW calculations on massively parallel supercomputers. Our GW code is interfaced with the plane-wave pseudopotential ab initio molecular dynamics software ``OpenAtom'' which is based on the Charm++ parallel library. The computation of the electronic polarizability is one of the most expensive parts of any GW calculation. We describe our strategy that uses a real-space representation to avoid the large number of fast Fourier transforms (FFTs) common to most GW methods. We also describe an eigendecomposition of the plasmon modes from the resulting dielectric matrix that enhances efficiency. This work is supported by NSF through Grant ACI-1339804.

  16. 76 FR 75875 - Defense Federal Acquisition Regulation Supplement; Open Source Software Public Meeting

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-12-05

    ... Software Public Meeting AGENCY: Defense Acquisition Regulations System, Department of Defense (DoD). ACTION... regarding the use of open source software in DoD contracts. DATES: Public Meeting: January 12, 2012, from 10... for the discussions in the meeting. Please cite ``Public Meeting, DFARS--Open Source Software'' in...

  17. OpenChrom: a cross-platform open source software for the mass spectrometric analysis of chromatographic data

    PubMed Central

    2010-01-01

    Background Today, data evaluation has become a bottleneck in chromatographic science. Analytical instruments equipped with automated samplers yield large amounts of measurement data, which needs to be verified and analyzed. Since nearly every GC/MS instrument vendor offers its own data format and software tools, the consequences are problems with data exchange and a lack of comparability between the analytical results. To challenge this situation a number of either commercial or non-profit software applications have been developed. These applications provide functionalities to import and analyze several data formats but have shortcomings in terms of the transparency of the implemented analytical algorithms and/or are restricted to a specific computer platform. Results This work describes a native approach to handle chromatographic data files. The approach can be extended in its functionality such as facilities to detect baselines, to detect, integrate and identify peaks and to compare mass spectra, as well as the ability to internationalize the application. Additionally, filters can be applied on the chromatographic data to enhance its quality, for example to remove background and noise. Extended operations like do, undo and redo are supported. Conclusions OpenChrom is a software application to edit and analyze mass spectrometric chromatographic data. It is extensible in many different ways, depending on the demands of the users or the analytical procedures and algorithms. It offers a customizable graphical user interface. The software is independent of the operating system, due to the fact that the Rich Client Platform is written in Java. OpenChrom is released under the Eclipse Public License 1.0 (EPL). There are no license constraints regarding extensions. They can be published using open source as well as proprietary licenses. OpenChrom is available free of charge at http://www.openchrom.net. PMID:20673335

  18. A toolbox for developing bioinformatics software

    PubMed Central

    Potrzebowski, Wojciech; Puton, Tomasz; Rother, Magdalena; Wywial, Ewa; Bujnicki, Janusz M.

    2012-01-01

    Creating useful software is a major activity of many scientists, including bioinformaticians. Nevertheless, software development in an academic setting is often unsystematic, which can lead to problems associated with maintenance and long-term availibility. Unfortunately, well-documented software development methodology is difficult to adopt, and technical measures that directly improve bioinformatic programming have not been described comprehensively. We have examined 22 software projects and have identified a set of practices for software development in an academic environment. We found them useful to plan a project, support the involvement of experts (e.g. experimentalists), and to promote higher quality and maintainability of the resulting programs. This article describes 12 techniques that facilitate a quick start into software engineering. We describe 3 of the 22 projects in detail and give many examples to illustrate the usage of particular techniques. We expect this toolbox to be useful for many bioinformatics programming projects and to the training of scientific programmers. PMID:21803787

  19. A toolbox for developing bioinformatics software.

    PubMed

    Rother, Kristian; Potrzebowski, Wojciech; Puton, Tomasz; Rother, Magdalena; Wywial, Ewa; Bujnicki, Janusz M

    2012-03-01

    Creating useful software is a major activity of many scientists, including bioinformaticians. Nevertheless, software development in an academic setting is often unsystematic, which can lead to problems associated with maintenance and long-term availibility. Unfortunately, well-documented software development methodology is difficult to adopt, and technical measures that directly improve bioinformatic programming have not been described comprehensively. We have examined 22 software projects and have identified a set of practices for software development in an academic environment. We found them useful to plan a project, support the involvement of experts (e.g. experimentalists), and to promote higher quality and maintainability of the resulting programs. This article describes 12 techniques that facilitate a quick start into software engineering. We describe 3 of the 22 projects in detail and give many examples to illustrate the usage of particular techniques. We expect this toolbox to be useful for many bioinformatics programming projects and to the training of scientific programmers.

  20. Towards easing the configuration and new team member accommodation for open source software based portals

    NASA Astrophysics Data System (ADS)

    Fu, L.; West, P.; Zednik, S.; Fox, P. A.

    2013-12-01

    For simple portals such as vocabulary based services, which contain small amounts of data and require only hyper-textual representation, it is often an overkill to adopt the whole software stack of database, middleware and front end, or to use a general Web development framework as the starting point of development. Directly combining open source software is a much more favorable approach. However, our experience with the Coastal and Marine Spatial Planning Vocabulary (CMSPV) service portal shows that there are still issues such as system configuration and accommodating a new team member that need to be handled carefully. In this contribution, we share our experience in the context of the CMSPV portal, and focus on the tools and mechanisms we've developed to ease the configuration job and the incorporation process of new project members. We discuss the configuration issues that arise when we don't have complete control over how the software in use is configured and need to follow existing configuration styles that may not be well documented, especially when multiple pieces of such software need to work together as a combined system. As for the CMSPV portal, it is built on two pieces of open source software that are still under rapid development: a Fuseki data server and Epimorphics Linked Data API (ELDA) front end. Both lack mature documentation and tutorials. We developed comparison and labeling tools to ease the problem of system configuration. Another problem that slowed down the project is that project members came and went during the development process, so new members needed to start with a partially configured system and incomplete documentation left by old members. We developed documentation/tutorial maintenance mechanisms based on our comparison and labeling tools to make it easier for the new members to be incorporated into the project. These tools and mechanisms also provided benefit to other projects that reused the software components from the CMSPV

  1. SignalPlant: an open signal processing software platform.

    PubMed

    Plesinger, F; Jurco, J; Halamek, J; Jurak, P

    2016-07-01

    The growing technical standard of acquisition systems allows the acquisition of large records, often reaching gigabytes or more in size as is the case with whole-day electroencephalograph (EEG) recordings, for example. Although current 64-bit software for signal processing is able to process (e.g. filter, analyze, etc) such data, visual inspection and labeling will probably suffer from rather long latency during the rendering of large portions of recorded signals. For this reason, we have developed SignalPlant-a stand-alone application for signal inspection, labeling and processing. The main motivation was to supply investigators with a tool allowing fast and interactive work with large multichannel records produced by EEG, electrocardiograph and similar devices. The rendering latency was compared with EEGLAB and proves significantly faster when displaying an image from a large number of samples (e.g. 163-times faster for 75  ×  10(6) samples). The presented SignalPlant software is available free and does not depend on any other computation software. Furthermore, it can be extended with plugins by third parties ensuring its adaptability to future research tasks and new data formats.

  2. Software Development Management: Empirical and Analytical Perspectives

    ERIC Educational Resources Information Center

    Kang, Keumseok

    2011-01-01

    Managing software development is a very complex activity because it must deal with people, organizations, technologies, and business processes. My dissertation consists of three studies that examine software development management from various perspectives. The first study empirically investigates the impacts of prior experience with similar…

  3. Developing the E-Scape Software System

    ERIC Educational Resources Information Center

    Derrick, Karim

    2012-01-01

    Most innovations have contextual pre-cursors that prompt new ways of thinking and in their turn help to give form to the new reality. This was the case with the e-scape software development process. The origins of the system existed in software components and ideas that we had developed through previous projects, but the ultimate direction we took…

  4. Developing a Customized Teaching Assessment Software Instrument.

    ERIC Educational Resources Information Center

    Stanbrough, Mark; Stinson, Bill

    The goal of this project was to develop customized teaching analysis software that would accurately measure recorded teaching behaviors and communicate useful results quickly to the observed teacher with the goal of improving teacher performance. A computer software program, "The Evaluator," was developed that uses a Windows interface programmed…

  5. Workflow-Based Software Development Environment

    NASA Technical Reports Server (NTRS)

    Izygon, Michel E.

    2013-01-01

    The Software Developer's Assistant (SDA) helps software teams more efficiently and accurately conduct or execute software processes associated with NASA mission-critical software. SDA is a process enactment platform that guides software teams through project-specific standards, processes, and procedures. Software projects are decomposed into all of their required process steps or tasks, and each task is assigned to project personnel. SDA orchestrates the performance of work required to complete all process tasks in the correct sequence. The software then notifies team members when they may begin work on their assigned tasks and provides the tools, instructions, reference materials, and supportive artifacts that allow users to compliantly perform the work. A combination of technology components captures and enacts any software process use to support the software lifecycle. It creates an adaptive workflow environment that can be modified as needed. SDA achieves software process automation through a Business Process Management (BPM) approach to managing the software lifecycle for mission-critical projects. It contains five main parts: TieFlow (workflow engine), Business Rules (rules to alter process flow), Common Repository (storage for project artifacts, versions, history, schedules, etc.), SOA (interface to allow internal, GFE, or COTS tools integration), and the Web Portal Interface (collaborative web environment

  6. The SCEC Broadband Platform: Open-Source Software for Strong Ground Motion Simulation and Validation

    NASA Astrophysics Data System (ADS)

    Goulet, C.; Silva, F.; Maechling, P. J.; Callaghan, S.; Jordan, T. H.

    2015-12-01

    The Southern California Earthquake Center (SCEC) Broadband Platform (BBP) is a carefully integrated collection of open-source scientific software programs that can simulate broadband (0-100Hz) ground motions for earthquakes at regional scales. The BBP scientific software modules implement kinematic rupture generation, low and high-frequency seismogram synthesis using wave propagation through 1D layered velocity structures, seismogram ground motion amplitude calculations, and goodness of fit measurements. These modules are integrated into a software system that provides user-defined, repeatable, calculation of ground motion seismograms, using multiple alternative ground motion simulation methods, and software utilities that can generate plots, charts, and maps. The BBP has been developed over the last five years in a collaborative scientific, engineering, and software development project involving geoscientists, earthquake engineers, graduate students, and SCEC scientific software developers. The BBP can run earthquake rupture and wave propagation modeling software to simulate ground motions for well-observed historical earthquakes and to quantify how well the simulated broadband seismograms match the observed seismograms. The BBP can also run simulations for hypothetical earthquakes. In this case, users input an earthquake location and magnitude description, a list of station locations, and a 1D velocity model for the region of interest, and the BBP software then calculates ground motions for the specified stations. The SCEC BBP software released in 2015 can be compiled and run on recent Linux systems with GNU compilers. It includes 5 simulation methods, 7 simulation regions covering California, Japan, and Eastern North America, the ability to compare simulation results against GMPEs, updated ground motion simulation methods, and a simplified command line user interface.

  7. Firing Room Remote Application Software Development

    NASA Technical Reports Server (NTRS)

    Liu, Kan

    2015-01-01

    The Engineering and Technology Directorate (NE) at National Aeronautics and Space Administration (NASA) Kennedy Space Center (KSC) is designing a new command and control system for the checkout and launch of Space Launch System (SLS) and future rockets. The purposes of the semester long internship as a remote application software developer include the design, development, integration, and verification of the software and hardware in the firing rooms, in particular with the Mobile Launcher (ML) Launch Accessories (LACC) subsystem. In addition, a software test verification procedure document was created to verify and checkout LACC software for Launch Equipment Test Facility (LETF) testing.

  8. Development of Updated ABsorption SIMulation Software (ABSIM)

    SciTech Connect

    Yang, Zhiyao; Tang, Xin; Qu, Ming; Abdelaziz, Omar; Gluesenkamp, Kyle R

    2014-01-01

    ABsorption SIMulation, ABSIM, was developed for the simulation of absorption systems by The Oak Ridge National Laboratory during 1980s and 1990s. ABSIM provides a platform for users to investigate various cycle configurations and working fluids, to calculate their operating parameters, to predict their performance, and to compare them with each other on a uniform basis. ABSIM is indeed a very useful and accurate tool for researchers to investigate various absorption systems. However, it has not been well maintained: it is incompatible with recent operating systems; the interface needs improved user-friendliness, and the system needs better parameter setting and debugging tools to help achieve convergence. Therefore, it is highly needed to update and improve ABSIM. The paper presents recent efforts to improve ABSIM s compatibility with current operating systems, user interface, and analysis capabilities. The paper details the features and functions of the newly updated ABSIM software. The new ABSIM still uses the previously validated calculation engine of the old ABSIM. The new graphic user interfaces (GUI) were developed in Qt, which is an open source license GUI software based on C++. XML was used as the database for data storage in the new ABSIM. The new ABSIM has been designed to be easily learned and used. It has enhanced editing and construction functions, plus enhanced analysis features including parametric tables, plotting, property plots, and master panels for debugging. A single effect water/LiBr absorption system is used as a case study in this paper to illustrate the features, capabilities, and functions of the new ABSIM. This case study was actually an example system available in the old ABSIM. The new version of ABSIM will be continuously developed to include additional subroutines for the components in liquid desiccant systems. The new ABSIM will be available to public for free. The ultimate goal of the new ABSIM is to allow it to become a simulation

  9. Developing Confidence Limits For Reliability Of Software

    NASA Technical Reports Server (NTRS)

    Hayhurst, Kelly J.

    1991-01-01

    Technique developed for estimating reliability of software by use of Moranda geometric de-eutrophication model. Pivotal method enables straightforward construction of exact bounds with associated degree of statistical confidence about reliability of software. Confidence limits thus derived provide precise means of assessing quality of software. Limits take into account number of bugs found while testing and effects of sampling variation associated with random order of discovering bugs.

  10. Software Development Standard for Mission Critical Systems

    DTIC Science & Technology

    2014-03-17

    applied on contracts for mission critical systems . This report provides a full lifecycle software development process standard. This version includes an...integration and test environments. 5.3 Updated requirements for system requirements analysis . v Issue Date Sections Changes 5.4 Updated...requirements for system architectural design. 5.5 Updated requirements for software requirements analysis . 5.6 Major update to software

  11. A view of software development environment issues

    NASA Technical Reports Server (NTRS)

    Boehm, B.

    1985-01-01

    The unique and challenging nature of the Space Station Program requires that software standards be effectively used to control costs, facilitate enhancements and ensure safety. The Software Standards Panel identified and developed recommendations in four areas to help the Space Station Program achieve these objectives. The areas in which recommendations are offered are policy, organization, process and candidate software standards for the Space Station Program. The concensus process employed by the panel is given and recommendations are made.

  12. Evaluation and selection of open-source EMR software packages based on integrated AHP and TOPSIS.

    PubMed

    Zaidan, A A; Zaidan, B B; Al-Haiqi, Ahmed; Kiah, M L M; Hussain, Muzammil; Abdulnabi, Mohamed

    2015-02-01

    Evaluating and selecting software packages that meet the requirements of an organization are difficult aspects of software engineering process. Selecting the wrong open-source EMR software package can be costly and may adversely affect business processes and functioning of the organization. This study aims to evaluate and select open-source EMR software packages based on multi-criteria decision-making. A hands-on study was performed and a set of open-source EMR software packages were implemented locally on separate virtual machines to examine the systems more closely. Several measures as evaluation basis were specified, and the systems were selected based a set of metric outcomes using Integrated Analytic Hierarchy Process (AHP) and TOPSIS. The experimental results showed that GNUmed and OpenEMR software can provide better basis on ranking score records than other open-source EMR software packages.

  13. Computer-aided software development process design

    NASA Technical Reports Server (NTRS)

    Lin, Chi Y.; Levary, Reuven R.

    1989-01-01

    The authors describe an intelligent tool designed to aid managers of software development projects in planning, managing, and controlling the development process of medium- to large-scale software projects. Its purpose is to reduce uncertainties in the budget, personnel, and schedule planning of software development projects. It is based on dynamic model for the software development and maintenance life-cycle process. This dynamic process is composed of a number of time-varying, interacting developmental phases, each characterized by its intended functions and requirements. System dynamics is used as a modeling methodology. The resulting Software LIfe-Cycle Simulator (SLICS) and the hybrid expert simulation system of which it is a subsystem are described.

  14. Educational Software--New Guidelines for Development.

    ERIC Educational Resources Information Center

    Gold, Patricia Cohen

    1984-01-01

    Discusses standards developed by the Educational Computer Service of the National Education Association that incorporate technical, educational, and documentation components to guide authors in the development of quality educational software. (Author/MBR)

  15. Application of the Open Software Foundation (OSF)distributed computing environment to global PACS

    NASA Astrophysics Data System (ADS)

    Martinez, Ralph; Alsafadi, Yasser H.; Kim, Jinman

    1994-05-01

    In this paper, we present our approach to developing Global Picture Archiving and Communication System (GPACS) applications using the Open Software Foundation (OSF) Distributed Computing Environment (DCE) services and toolkits. The OSF DCE services include remote procedure calls, naming service, threads service, time service, file management services, and security service. Several OSF DCE toolkits are currently available from computer and software vendors. Designing distributed Global PACS applications using the OSF DCE approach will feature an open architecture, heterogeneity, and technology independence for GPACS remote consultation and diagnosis applications, including synchronized image annotation, and system privacy and security. The applications can communicate through various transport services and communications networks in a Global PACS environment. The use of OSF DCE services for Global PACS will enable us to develop a robust distributed structure and new user services which feature reliability and scalability for Global PACS environments.

  16. Streamlining the Process of Acquiring Secure Open Architecture Software Systems

    DTIC Science & Technology

    2013-10-08

    on the case studies centering on military command and control systems , such as the future C2RPC models being considered by naval commands (Garcia...however, requires new guidance and ideally, automated tools, for explicitly modeling and analyzing the architecture of an OA system during its...secure open architecture command and control systems , where next-generation military command and control systems are expected to be developed from

  17. A generic open-source software framework supporting scenario simulations in bioterrorist crises.

    PubMed

    Falenski, Alexander; Filter, Matthias; Thöns, Christian; Weiser, Armin A; Wigger, Jan-Frederik; Davis, Matthew; Douglas, Judith V; Edlund, Stefan; Hu, Kun; Kaufman, James H; Appel, Bernd; Käsbohrer, Annemarie

    2013-09-01

    Since the 2001 anthrax attack in the United States, awareness of threats originating from bioterrorism has grown. This led internationally to increased research efforts to improve knowledge of and approaches to protecting human and animal populations against the threat from such attacks. A collaborative effort in this context is the extension of the open-source Spatiotemporal Epidemiological Modeler (STEM) simulation and modeling software for agro- or bioterrorist crisis scenarios. STEM, originally designed to enable community-driven public health disease models and simulations, was extended with new features that enable integration of proprietary data as well as visualization of agent spread along supply and production chains. STEM now provides a fully developed open-source software infrastructure supporting critical modeling tasks such as ad hoc model generation, parameter estimation, simulation of scenario evolution, estimation of effects of mitigation or management measures, and documentation. This open-source software resource can be used free of charge. Additionally, STEM provides critical features like built-in worldwide data on administrative boundaries, transportation networks, or environmental conditions (eg, rainfall, temperature, elevation, vegetation). Users can easily combine their own confidential data with built-in public data to create customized models of desired resolution. STEM also supports collaborative and joint efforts in crisis situations by extended import and export functionalities. In this article we demonstrate specifically those new software features implemented to accomplish STEM application in agro- or bioterrorist crisis scenarios.

  18. Learning from open source software projects to improve scientific review

    PubMed Central

    Ghosh, Satrajit S.; Klein, Arno; Avants, Brian; Millman, K. Jarrod

    2012-01-01

    Peer-reviewed publications are the primary mechanism for sharing scientific results. The current peer-review process is, however, fraught with many problems that undermine the pace, validity, and credibility of science. We highlight five salient problems: (1) reviewers are expected to have comprehensive expertise; (2) reviewers do not have sufficient access to methods and materials to evaluate a study; (3) reviewers are neither identified nor acknowledged; (4) there is no measure of the quality of a review; and (5) reviews take a lot of time, and once submitted cannot evolve. We propose that these problems can be resolved by making the following changes to the review process. Distributing reviews to many reviewers would allow each reviewer to focus on portions of the article that reflect the reviewer's specialty or area of interest and place less of a burden on any one reviewer. Providing reviewers materials and methods to perform comprehensive evaluation would facilitate transparency, greater scrutiny, and replication of results. Acknowledging reviewers makes it possible to quantitatively assess reviewer contributions, which could be used to establish the impact of the reviewer in the scientific community. Quantifying review quality could help establish the importance of individual reviews and reviewers as well as the submitted article. Finally, we recommend expediting post-publication reviews and allowing for the dialog to continue and flourish in a dynamic and interactive manner. We argue that these solutions can be implemented by adapting existing features from open-source software management and social networking technologies. We propose a model of an open, interactive review system that quantifies the significance of articles, the quality of reviews, and the reputation of reviewers. PMID:22529798

  19. FieldTrip: Open source software for advanced analysis of MEG, EEG, and invasive electrophysiological data.

    PubMed

    Oostenveld, Robert; Fries, Pascal; Maris, Eric; Schoffelen, Jan-Mathijs

    2011-01-01

    This paper describes FieldTrip, an open source software package that we developed for the analysis of MEG, EEG, and other electrophysiological data. The software is implemented as a MATLAB toolbox and includes a complete set of consistent and user-friendly high-level functions that allow experimental neuroscientists to analyze experimental data. It includes algorithms for simple and advanced analysis, such as time-frequency analysis using multitapers, source reconstruction using dipoles, distributed sources and beamformers, connectivity analysis, and nonparametric statistical permutation tests at the channel and source level. The implementation as toolbox allows the user to perform elaborate and structured analyses of large data sets using the MATLAB command line and batch scripting. Furthermore, users and developers can easily extend the functionality and implement new algorithms. The modular design facilitates the reuse in other software packages.

  20. Apero, AN Open Source Bundle Adjusment Software for Automatic Calibration and Orientation of Set of Images

    NASA Astrophysics Data System (ADS)

    Pierrot Deseilligny, M.; Clery, I.

    2011-09-01

    IGN has developed a set of photogrammetric tools, APERO and MICMAC, for computing 3D models from set of images. This software, developed initially for its internal needs are now delivered as open source code. This paper focuses on the presentation of APERO the orientation software. Compared to some other free software initiatives, it is probably more complex but also more complete, its targeted user is rather professionals (architects, archaeologist, geomophologist) than people. APERO uses both computer vision approach for estimation of initial solution and photogrammetry for a rigorous compensation of the total error; it has a large library of parametric model of distortion allowing a precise modelization of all the kind of pinhole camera we know, including several model of fish-eye; there is also several tools for geo-referencing the result. The results are illustrated on various application, including the data-set of 3D-Arch workshop.

  1. FieldTrip: Open Source Software for Advanced Analysis of MEG, EEG, and Invasive Electrophysiological Data

    PubMed Central

    Oostenveld, Robert; Fries, Pascal; Maris, Eric; Schoffelen, Jan-Mathijs

    2011-01-01

    This paper describes FieldTrip, an open source software package that we developed for the analysis of MEG, EEG, and other electrophysiological data. The software is implemented as a MATLAB toolbox and includes a complete set of consistent and user-friendly high-level functions that allow experimental neuroscientists to analyze experimental data. It includes algorithms for simple and advanced analysis, such as time-frequency analysis using multitapers, source reconstruction using dipoles, distributed sources and beamformers, connectivity analysis, and nonparametric statistical permutation tests at the channel and source level. The implementation as toolbox allows the user to perform elaborate and structured analyses of large data sets using the MATLAB command line and batch scripting. Furthermore, users and developers can easily extend the functionality and implement new algorithms. The modular design facilitates the reuse in other software packages. PMID:21253357

  2. Open-Source Software for Modeling of Nanoelectronic Devices

    NASA Technical Reports Server (NTRS)

    Oyafuso, Fabiano; Hua, Hook; Tisdale, Edwin; Hart, Don

    2004-01-01

    The Nanoelectronic Modeling 3-D (NEMO 3-D) computer program has been upgraded to open-source status through elimination of license-restricted components. The present version functions equivalently to the version reported in "Software for Numerical Modeling of Nanoelectronic Devices" (NPO-30520), NASA Tech Briefs, Vol. 27, No. 11 (November 2003), page 37. To recapitulate: NEMO 3-D performs numerical modeling of the electronic transport and structural properties of a semiconductor device that has overall dimensions of the order of tens of nanometers. The underlying mathematical model represents the quantum-mechanical behavior of the device resolved to the atomistic level of granularity. NEMO 3-D solves the applicable quantum matrix equation on a Beowulf-class cluster computer by use of a parallel-processing matrix vector multiplication algorithm coupled to a Lanczos and/or Rayleigh-Ritz algorithm that solves for eigenvalues. A prior upgrade of NEMO 3-D incorporated a capability for a strain treatment, parameterized for bulk material properties of GaAs and InAs, for two tight-binding submodels. NEMO 3-D has been demonstrated in atomistic analyses of effects of disorder in alloys and, in particular, in bulk In(x)Ga(1-x)As and in In(0.6)Ga(0.4)As quantum dots.

  3. Towards Archetypes-Based Software Development

    NASA Astrophysics Data System (ADS)

    Piho, Gunnar; Roost, Mart; Perkins, David; Tepandi, Jaak

    We present a framework for the archetypes based engineering of domains, requirements and software (Archetypes-Based Software Development, ABD). An archetype is defined as a primordial object that occurs consistently and universally in business domains and in business software systems. An archetype pattern is a collaboration of archetypes. Archetypes and archetype patterns are used to capture conceptual information into domain specific models that are utilized by ABD. The focus of ABD is on software factories - family-based development artefacts (domain specific languages, patterns, frameworks, tools, micro processes, and others) that can be used to build the family members. We demonstrate the usage of ABD for developing laboratory information management system (LIMS) software for the Clinical and Biomedical Proteomics Group, at the Leeds Institute of Molecular Medicine, University of Leeds.

  4. Critical Considerations for WORM Software Development.

    ERIC Educational Resources Information Center

    Berg, Brian A.

    1987-01-01

    Addresses advantages and disadvantages of write-once read-many (WORM) optical disks and other software considerations resulting from the write-once nature of WORM media to provide guidelines for determining whether this technology is appropriate for an application. Three brief case studies describe WORM software development efforts. (MES)

  5. Interactive Programming Support for Secure Software Development

    ERIC Educational Resources Information Center

    Xie, Jing

    2012-01-01

    Software vulnerabilities originating from insecure code are one of the leading causes of security problems people face today. Unfortunately, many software developers have not been adequately trained in writing secure programs that are resistant from attacks violating program confidentiality, integrity, and availability, a style of programming…

  6. Issues in Software Development in Composition.

    ERIC Educational Resources Information Center

    Barker, Thomas T.

    Noting the increase in the number of teachers developing computer software for composition instruction, this paper explores the issues that are shaping the direction of computer assistance in writing instruction. The first half of the paper deals with specific questions teachers must consider as they design software. These are divided into…

  7. An Open Source Software Platform for Visualizing and Teaching Conservation Tasks in Architectural Heritage Environments

    NASA Astrophysics Data System (ADS)

    San Jose, I. Ignacio; Martinez, J.; Alvarez, N.; Fernandez, J. J.; Delgado, F.; Martinez, R.; Puche, J. C.; Finat, J.

    2013-07-01

    In this work we present a new software platform for interactive volumetric visualization of complex architectural objects and their applications to teaching and training conservation interventions in Architectural Cultural Heritage. Photogrammetric surveying is performed by processing the information arising from image- and range-based devices. Our visualization application is based on an adaptation of WebGL open standard; the performed adaptation allows to import open standards and an interactive navigation of 3D models in ordinary web navigators with a good performance. The Visualization platform is scalable and can be applied to urban environments, provided open source files be used; CityGML is an open standard based on a geometry -driven Ontology which is compatible with this approach. We illustrate our results with examples concerning to very damaged churches and a urban district of Segovia (World Cultural Heritage). Their connection with appropriate database eases the building evolution and interventions tracking. We have incorporated some preliminary examples to illustrate Advanced Visualization Tools and architectural e-Learning software platform which have been created for assessing conservation and restoration tasks in very damaged buildings. First version of the Advanced Visualization application has been developed in the framework of ADISPA Spanish Project Results. Our results are illustrated with the application of these software applications to several very damaged cultural heritage buildings in rural zones of Castilla y Leon (Spain).

  8. Open Source Seismic Software in NOAA's Next Generation Tsunami Warning System

    NASA Astrophysics Data System (ADS)

    Hellman, S. B.; Baker, B. I.; Hagerty, M. T.; Leifer, J. M.; Lisowski, S.; Thies, D. A.; Donnelly, B. K.; Griffith, F. P.

    2014-12-01

    The Tsunami Information technology Modernization (TIM) is a project spearheaded by National Oceanic and Atmospheric Administration to update the United States' Tsunami Warning System software currently employed at the Pacific Tsunami Warning Center (Eva Beach, Hawaii) and the National Tsunami Warning Center (Palmer, Alaska). This entirely open source software project will integrate various seismic processing utilities with the National Weather Service Weather Forecast Office's core software, AWIPS2. For the real-time and near real-time seismic processing aspect of this project, NOAA has elected to integrate the open source portions of GFZ's SeisComP 3 (SC3) processing system into AWIPS2. To provide for better tsunami threat assessments we are developing open source tools for magnitude estimations (e.g., moment magnitude, energy magnitude, surface wave magnitude), detection of slow earthquakes with the Theta discriminant, moment tensor inversions (e.g. W-phase and teleseismic body waves), finite fault inversions, and array processing. With our reliance on common data formats such as QuakeML and seismic community standard messaging systems, all new facilities introduced into AWIPS2 and SC3 will be available as stand-alone tools or could be easily integrated into other real time seismic monitoring systems such as Earthworm, Antelope, etc. Additionally, we have developed a template based design paradigm so that the developer or scientist can efficiently create upgrades, replacements, and/or new metrics to the seismic data processing with only a cursory knowledge of the underlying SC3.

  9. Investigating Advances in the Acquisition of Systems Based on Open Architecture and Open Source Software

    DTIC Science & Technology

    2011-08-01

    careers , in order to survive and evolve. Similarly, as FOSSD projects give rise to new types of requirements for community building, community...services, and creating more stimulating jobs, careers , and workforce development opportunities depend on faster, better, and cheaper software...are three highly visible astrophysics research projects whose scientific discoveries depend on processing remotely sensed data through a complex

  10. Crawling The Web for Libre: Selecting, Integrating, Extending and Releasing Open Source Software

    NASA Astrophysics Data System (ADS)

    Truslove, I.; Duerr, R. E.; Wilcox, H.; Savoie, M.; Lopez, L.; Brandt, M.

    2012-12-01

    Libre is a project developed by the National Snow and Ice Data Center (NSIDC). Libre is devoted to liberating science data from its traditional constraints of publication, location, and findability. Libre embraces and builds on the notion of making knowledge freely available, and both Creative Commons licensed content and Open Source Software are crucial building blocks for, as well as required deliverable outcomes of the project. One important aspect of the Libre project is to discover cryospheric data published on the internet without prior knowledge of the location or even existence of that data. Inspired by well-known search engines and their underlying web crawling technologies, Libre has explored tools and technologies required to build a search engine tailored to allow users to easily discover geospatial data related to the polar regions. After careful consideration, the Libre team decided to base its web crawling work on the Apache Nutch project (http://nutch.apache.org). Nutch is "an open source web-search software project" written in Java, with good documentation, a significant user base, and an active development community. Nutch was installed and configured to search for the types of data of interest, and the team created plugins to customize the default Nutch behavior to better find and categorize these data feeds. This presentation recounts the Libre team's experiences selecting, using, and extending Nutch, and working with the Nutch user and developer community. We will outline the technical and organizational challenges faced in order to release the project's software as Open Source, and detail the steps actually taken. We distill these experiences into a set of heuristics and recommendations for using, contributing to, and releasing Open Source Software.

  11. OpenStructure: an integrated software framework for computational structural biology

    PubMed Central

    Biasini, M.; Schmidt, T.; Bienert, S.; Mariani, V.; Studer, G.; Haas, J.; Johner, N.; Schenk, A. D.; Philippsen, A.; Schwede, T.

    2013-01-01

    Research projects in structural biology increasingly rely on combinations of heterogeneous sources of information, e.g. evolutionary information from multiple sequence alignments, experimental evidence in the form of density maps and proximity constraints from proteomics experiments. The OpenStructure software framework, which allows the seamless integration of information of different origin, has previously been introduced. The software consists of C++ libraries which are fully accessible from the Python programming language. Additionally, the framework provides a sophisticated graphics module that interactively displays molecular structures and density maps in three dimensions. In this work, the latest developments in the OpenStructure framework are outlined. The extensive capabilities of the framework will be illustrated using short code examples that show how information from molecular-structure coordinates can be combined with sequence data and/or density maps. The framework has been released under the LGPL version 3 license and is available for download from http://www.openstructure.org. PMID:23633579

  12. OpenStructure: an integrated software framework for computational structural biology.

    PubMed

    Biasini, M; Schmidt, T; Bienert, S; Mariani, V; Studer, G; Haas, J; Johner, N; Schenk, A D; Philippsen, A; Schwede, T

    2013-05-01

    Research projects in structural biology increasingly rely on combinations of heterogeneous sources of information, e.g. evolutionary information from multiple sequence alignments, experimental evidence in the form of density maps and proximity constraints from proteomics experiments. The OpenStructure software framework, which allows the seamless integration of information of different origin, has previously been introduced. The software consists of C++ libraries which are fully accessible from the Python programming language. Additionally, the framework provides a sophisticated graphics module that interactively displays molecular structures and density maps in three dimensions. In this work, the latest developments in the OpenStructure framework are outlined. The extensive capabilities of the framework will be illustrated using short code examples that show how information from molecular-structure coordinates can be combined with sequence data and/or density maps. The framework has been released under the LGPL version 3 license and is available for download from http://www.openstructure.org.

  13. Concept Development for Software Health Management

    NASA Technical Reports Server (NTRS)

    Riecks, Jung; Storm, Walter; Hollingsworth, Mark

    2011-01-01

    This report documents the work performed by Lockheed Martin Aeronautics (LM Aero) under NASA contract NNL06AA08B, delivery order NNL07AB06T. The Concept Development for Software Health Management (CDSHM) program was a NASA funded effort sponsored by the Integrated Vehicle Health Management Project, one of the four pillars of the NASA Aviation Safety Program. The CD-SHM program focused on defining a structured approach to software health management (SHM) through the development of a comprehensive failure taxonomy that is used to characterize the fundamental failure modes of safety-critical software.

  14. Entrepreneurial model based technology creative industries sector software through the use of free open source software for Universitas Pendidikan Indonesia students

    NASA Astrophysics Data System (ADS)

    Hasan, B.; Hasbullah; Purnama, W.; Hery, A.

    2016-04-01

    Creative industry development areas of software by using Free Open Source Software (FOSS) is expected to be one of the solutions to foster new entrepreneurs of the students who can open job opportunities and contribute to economic development in Indonesia. This study aims to create entrepreneurial coaching model based on the creative industries by utilizing FOSS software field as well as provide understanding and fostering entrepreneurial creative industries based field software for students of Universitas Pendidikan Indonesia. This activity phase begins with identifying entrepreneurs or business software technology that will be developed, training and mentoring, apprenticeship process at industrial partners, creation of business plans and monitoring and evaluation. This activity involves 30 UPI student which has the motivation to self-employment and have competence in the field of information technology. The results and outcomes expected from these activities is the birth of a number of new entrepreneurs from the students engaged in the software industry both software in the world of commerce (e-commerce) and education/learning (e-learning/LMS) and games.

  15. Implementing reproducible research using the Madagascar open-source software package

    NASA Astrophysics Data System (ADS)

    Fomel, S.

    2015-12-01

    Reproducible research is a concept pioneered by Jon Claerbout. It refers to the discipline of attaching software code and data to scientific publications, which enables the reader to reproduce, verify, and extend published computational experiments. The Madagascar open-source software package provides an example of implementing the reproducible research discipline in geophysical publications. The package contains not only software tools for making geophysical computations but also research papers complete with links to data and reproducible data-analysis workflows. When researchers discover a research paper published on the Madagascar website and install Madagascar, they are able to follow the links and replicate all computations to verify the published computational results. Of course, reproducibility is not the goal in itself. The goal is to be able to extend previously published research by, for example, trying new computations on previously used data or previously used computations on new data. The Madagscar collection currently contains about 150 research papers and book chapters and about 900 reproducible scripts. More than 80 people from different organizations around the world have contributed to the development. This experience shows that, instead of being the responsibility of an individual author, computational reproducibility can become the responsibility of open-source scientific-software communities. Our experience shows how a dedicated community effort can keep a body of computational research alive by actively maintaining its reproducibility.

  16. Achieving Better Buying Power through Acquisition of Open Architecture Software Systems for Web and Mobile Devices

    DTIC Science & Technology

    2016-02-22

    SPONSORED REPORT SERIES Achieving Better Buying Power through Acquisition of Open Architecture Software Systems for Web and Mobile Devices 22...ACQUISITION RESEARCH PROGRAM SPONSORED REPORT SERIES Achieving Better Buying Power through Acquisition of Open Architecture Software Systems for Web ...Policy Naval Postgraduate School Executive Summary Many people within large enterprises rely on up to four Web -based or mobile devices for their

  17. Looking toward the Future: A Case Study of Open Source Software in the Humanities

    ERIC Educational Resources Information Center

    Quamen, Harvey

    2006-01-01

    In this article Harvey Quamen examines how the philosophy of open source software might be of particular benefit to humanities scholars in the near future--particularly for academic journals with limited financial resources. To this end he provides a case study in which he describes his use of open source technology (MySQL database software and…

  18. Automated computer software development standards enforcement

    SciTech Connect

    Yule, H.P.; Formento, J.W.

    1991-01-01

    The Uniform Development Environment (UDE) is being investigated as a means of enforcing software engineering standards. For the programmer, it provides an environment containing the tools and utilities necessary for orderly and controlled development and maintenance of code according to requirements. In addition, it provides DoD management and developer management the tools needed for all phases of software life cycle management and control, from project planning and management, to code development, configuration management, version control, and change control. This paper reports the status of UDE development and field testing. 5 refs.

  19. Shaping Software Engineering Curricula Using Open Source Communities: A Case Study

    ERIC Educational Resources Information Center

    Bowring, James; Burke, Quinn

    2016-01-01

    This paper documents four years of a novel approach to teaching a two-course sequence in software engineering as part of the ABET-accredited computer science curriculum at the College of Charleston. This approach is team-based and centers on learning software engineering in the context of open source software projects. In the first course, teams…

  20. OsiriX: an open-source software for navigating in multidimensional DICOM images.

    PubMed

    Rosset, Antoine; Spadola, Luca; Ratib, Osman

    2004-09-01

    A multidimensional image navigation and display software was designed for display and interpretation of large sets of multidimensional and multimodality images such as combined PET-CT studies. The software is developed in Objective-C on a Macintosh platform under the MacOS X operating system using the GNUstep development environment. It also benefits from the extremely fast and optimized 3D graphic capabilities of the OpenGL graphic standard widely used for computer games optimized for taking advantage of any hardware graphic accelerator boards available. In the design of the software special attention was given to adapt the user interface to the specific and complex tasks of navigating through large sets of image data. An interactive jog-wheel device widely used in the video and movie industry was implemented to allow users to navigate in the different dimensions of an image set much faster than with a traditional mouse or on-screen cursors and sliders. The program can easily be adapted for very specific tasks that require a limited number of functions, by adding and removing tools from the program's toolbar and avoiding an overwhelming number of unnecessary tools and functions. The processing and image rendering tools of the software are based on the open-source libraries ITK and VTK. This ensures that all new developments in image processing that could emerge from other academic institutions using these libraries can be directly ported to the OsiriX program. OsiriX is provided free of charge under the GNU open-source licensing agreement at http://homepage.mac.com/rossetantoine/osirix.

  1. Image analysis library software development

    NASA Technical Reports Server (NTRS)

    Guseman, L. F., Jr.; Bryant, J.

    1977-01-01

    The Image Analysis Library consists of a collection of general purpose mathematical/statistical routines and special purpose data analysis/pattern recognition routines basic to the development of image analysis techniques for support of current and future Earth Resources Programs. Work was done to provide a collection of computer routines and associated documentation which form a part of the Image Analysis Library.

  2. Final Report. Center for Scalable Application Development Software

    SciTech Connect

    Mellor-Crummey, John

    2014-10-26

    The Center for Scalable Application Development Software (CScADS) was established as a part- nership between Rice University, Argonne National Laboratory, University of California Berkeley, University of Tennessee – Knoxville, and University of Wisconsin – Madison. CScADS pursued an integrated set of activities with the aim of increasing the productivity of DOE computational scientists by catalyzing the development of systems software, libraries, compilers, and tools for leadership computing platforms. Principal Center activities were workshops to engage the research community in the challenges of leadership computing, research and development of open-source software, and work with computational scientists to help them develop codes for leadership computing platforms. This final report summarizes CScADS activities at Rice University in these areas.

  3. The Case for Open Source Software: The Interactional Discourse Lab

    ERIC Educational Resources Information Center

    Choi, Seongsook

    2016-01-01

    Computational techniques and software applications for the quantitative content analysis of texts are now well established, and many qualitative data software applications enable the manipulation of input variables and the visualization of complex relations between them via interactive and informative graphical interfaces. Although advances in…

  4. Open Source Software and Schools: New Opportunities and Directions

    ERIC Educational Resources Information Center

    Hepburn, Gary

    2005-01-01

    Integrating information and communication technology into schools has been challenging. A central component of the challenge is coping with the expense and usage restrictions of software that is installed on school computers. An alternative approach to the educational software problem is, however, emerging. This approach involves making greater…

  5. Measures and metrics for software development

    NASA Technical Reports Server (NTRS)

    1984-01-01

    The evaluations of and recommendations for the use of software development measures based on the practical and analytical experience of the Software Engineering Laboratory are discussed. The basic concepts of measurement and system of classification for measures are described. The principal classes of measures defined are explicit, analytic, and subjective. Some of the major software measurement schemes appearing in the literature are derived. The applications of specific measures in a production environment are explained. These applications include prediction and planning, review and assessment, and evaluation and selection.

  6. Developing Generic Software for Spacecraft Avionics

    NASA Technical Reports Server (NTRS)

    Smith, Joseph

    2003-01-01

    A proposed approach to the development of software for spacecraft avionics is based partly on a concept of generic software that could be tailored to satisfy requirements for specific missions. The proposed approach would stand in contrast to the conventional approach of first defining avionics requirements for a specific mission, then developing software specific to those requirements. The proposed approach might also be adaptable to programming computers that control and monitor other complex equipment systems that range in scale from automobiles to factories. The concept of a spacecraft avionics functional model (SAFM) is a major element of the proposed approach. An SAFM would be, essentially, a systematic and hierarchical description of the functionality required of the avionics software (and hardware) for a given mission. Although the initial input information used to start the construction of an SAFM would typically amount to a high-level description, the SAFM would thereafter be decomposed to a low level. The resulting low-level version of the model would be used to develop a set of generic requirements that could be expected to include a large fraction of all requirements for a large fraction of all missions. The generic requirements would be used to develop software modules that could be included in, or excluded from, the final flight software to satisfy the requirements of a specific mission.

  7. PhysioNet: physiologic signals, time series and related open source software for basic, clinical, and applied research.

    PubMed

    Moody, George B; Mark, Roger G; Goldberger, Ary L

    2011-01-01

    PhysioNet provides free web access to over 50 collections of recorded physiologic signals and time series, and related open-source software, in support of basic, clinical, and applied research in medicine, physiology, public health, biomedical engineering and computing, and medical instrument design and evaluation. Its three components (PhysioBank, the archive of signals; PhysioToolkit, the software library; and PhysioNetWorks, the virtual laboratory for collaborative development of future PhysioBank data collections and PhysioToolkit software components) connect researchers and students who need physiologic signals and relevant software with researchers who have data and software to share. PhysioNet's annual open engineering challenges stimulate rapid progress on unsolved or poorly solved questions of basic or clinical interest, by focusing attention on achievable solutions that can be evaluated and compared objectively using freely available reference data.

  8. Cloud computing geospatial application for water resources based on free and open source software and open standards - a prototype

    NASA Astrophysics Data System (ADS)

    Delipetrev, Blagoj

    2016-04-01

    Presently, most of the existing software is desktop-based, designed to work on a single computer, which represents a major limitation in many ways, starting from limited computer processing, storage power, accessibility, availability, etc. The only feasible solution lies in the web and cloud. This abstract presents research and development of a cloud computing geospatial application for water resources based on free and open source software and open standards using hybrid deployment model of public - private cloud, running on two separate virtual machines (VMs). The first one (VM1) is running on Amazon web services (AWS) and the second one (VM2) is running on a Xen cloud platform. The presented cloud application is developed using free and open source software, open standards and prototype code. The cloud application presents a framework how to develop specialized cloud geospatial application that needs only a web browser to be used. This cloud application is the ultimate collaboration geospatial platform because multiple users across the globe with internet connection and browser can jointly model geospatial objects, enter attribute data and information, execute algorithms, and visualize results. The presented cloud application is: available all the time, accessible from everywhere, it is scalable, works in a distributed computer environment, it creates a real-time multiuser collaboration platform, the programing languages code and components are interoperable, and it is flexible in including additional components. The cloud geospatial application is implemented as a specialized water resources application with three web services for 1) data infrastructure (DI), 2) support for water resources modelling (WRM), 3) user management. The web services are running on two VMs that are communicating over the internet providing services to users. The application was tested on the Zletovica river basin case study with concurrent multiple users. The application is a state

  9. Advanced Software Development Workstation Project, phase 3

    NASA Technical Reports Server (NTRS)

    1991-01-01

    ACCESS provides a generic capability to develop software information system applications which are explicitly intended to facilitate software reuse. In addition, it provides the capability to retrofit existing large applications with a user friendly front end for preparation of input streams in a way that will reduce required training time, improve the productivity even of experienced users, and increase accuracy. Current and past work shows that ACCESS will be scalable to much larger object bases.

  10. Locking Down the Software Development Environment

    DTIC Science & Technology

    2014-12-01

    the design of a component [3] and this is critical to looking at where the threats exist and oppor- tunities for threat exposure in the in the software...focus on building functionality, not managing the change [8]. Software CM ( SCM ) is the traditional technique for controlling the content of...deliverable components and is an essential element of a robust security policy [9]. Figure 1 illustrates a traditional unit-level development process

  11. A software development environment utilizing PAMELA

    NASA Technical Reports Server (NTRS)

    Flick, R. L.; Connelly, Richard W.

    1986-01-01

    Hardware capability and efficiency has increased dramatically since the invention of the computer, while software programmer productivity and efficiency has remained at a relatively low level. A user-friendly, adaptable, integrated software development environment is needed to alleviate this problem. The environment should be designed around the Ada language and a design methodology which takes advantage of the features of the Ada language as the Process Abstraction Method for Embedded Large Applications (PAMELA).

  12. Software Development for Decision Analysis

    DTIC Science & Technology

    1975-03-01

    34|"𔃻" ’’ " ’■|’■’ J - " ■»—w—"■ ■ 1 »I ■■ »I mill 1 11 1 MI independence (Category 1) or partial Independence (Categories 2 and 3) can >>e...place vandom variable 1 after decision 3 in the tree. In the nuit phase of our research, we hope to develop general algorithms for translating any...nMiu uiiim^p^M (^PLANT EFFICIENCY^ \\~r\\ |1T) % (CAPITAL COSTS Tris ^ /KW (OPERATING COSTS^) r=TTl MILLS /KWH (jmc^lTIQn-j] MILLS /KWH.*’** By

  13. FloWave.US: validated, open-source, and flexible software for ultrasound blood flow analysis.

    PubMed

    Coolbaugh, Crystal L; Bush, Emily C; Caskey, Charles F; Damon, Bruce M; Towse, Theodore F

    2016-10-01

    Automated software improves the accuracy and reliability of blood velocity, vessel diameter, blood flow, and shear rate ultrasound measurements, but existing software offers limited flexibility to customize and validate analyses. We developed FloWave.US-open-source software to automate ultrasound blood flow analysis-and demonstrated the validity of its blood velocity (aggregate relative error, 4.32%) and vessel diameter (0.31%) measures with a skeletal muscle ultrasound flow phantom. Compared with a commercial, manual analysis software program, FloWave.US produced equivalent in vivo cardiac cycle time-averaged mean (TAMean) velocities at rest and following a 10-s muscle contraction (mean bias <1 pixel for both conditions). Automated analysis of ultrasound blood flow data was 9.8 times faster than the manual method. Finally, a case study of a lower extremity muscle contraction experiment highlighted the ability of FloWave.US to measure small fluctuations in TAMean velocity, vessel diameter, and mean blood flow at specific time points in the cardiac cycle. In summary, the collective features of our newly designed software-accuracy, reliability, reduced processing time, cost-effectiveness, and flexibility-offer advantages over existing proprietary options. Further, public distribution of FloWave.US allows researchers to easily access and customize code to adapt ultrasound blood flow analysis to a variety of vascular physiology applications.

  14. Collaboration using open standards and open source software (examples of DIAS/CEOS Water Portal)

    NASA Astrophysics Data System (ADS)

    Miura, S.; Sekioka, S.; Kuroiwa, K.; Kudo, Y.

    2015-12-01

    The DIAS/CEOS Water Portal is a part of the DIAS (Data Integration and Analysis System, http://www.editoria.u-tokyo.ac.jp/projects/dias/?locale=en_US) systems for data distribution for users including, but not limited to, scientists, decision makers and officers like river administrators. One of the functions of this portal is to enable one-stop search and access variable water related data archived multiple data centers located all over the world. This portal itself does not store data. Instead, according to requests made by users on the web page, it retrieves data from distributed data centers on-the-fly and lets them download and see rendered images/plots. Our system mainly relies on the open source software GI-cat (http://essi-lab.eu/do/view/GIcat) and open standards such as OGC-CSW, Opensearch and OPeNDAP protocol to enable the above functions. Details on how it works will be introduced during the presentation. Although some data centers have unique meta data format and/or data search protocols, our portal's brokering function enables users to search across various data centers at one time. And this portal is also connected to other data brokering systems, including GEOSS DAB (Discovery and Access Broker). As a result, users can search over thousands of datasets, millions of files at one time. Users can access the DIAS/CEOS Water Portal system at http://waterportal.ceos.org/.

  15. Open-Source as a strategy for operational software - the case of Enki

    NASA Astrophysics Data System (ADS)

    Kolberg, Sjur; Bruland, Oddbjørn

    2014-05-01

    Since 2002, SINTEF Energy has been developing what is now known as the Enki modelling system. This development has been financed by Norway's largest hydropower producer Statkraft, motivated by a desire for distributed hydrological models in operational use. As the owner of the source code, Statkraft has recently decided on Open Source as a strategy for further development, and for migration from an R&D context to operational use. A current cooperation project is currently carried out between SINTEF Energy, 7 large Norwegian hydropower producers including Statkraft, three universities and one software company. Of course, the most immediate task is that of software maturing. A more important challenge, however, is one of gaining experience within the operational hydropower industry. A transition from lumped to distributed models is likely to also require revision of measurement program, calibration strategy, use of GIS and modern data sources like weather radar and satellite imagery. On the other hand, map based visualisations enable a richer information exchange between hydrologic forecasters and power market traders. The operating context of a distributed hydrology model within hydropower planning is far from settled. Being both a modelling framework and a library of plugin-routines to build models from, Enki supports the flexibility needed in this situation. Recent development has separated the core from the user interface, paving the way for a scripting API, cross-platform compilation, and front-end programs serving different degrees of flexibility, robustness and security. The open source strategy invites anyone to use Enki and to develop and contribute new modules. Once tested, the same modules are available for the operational versions of the program. A core challenge is to offer rigid testing procedures and mechanisms to reject routines in an operational setting, without limiting the experimentation with new modules. The Open Source strategy also has

  16. NeuroPG: open source software for optical pattern generation and data acquisition

    PubMed Central

    Avants, Benjamin W.; Murphy, Daniel B.; Dapello, Joel A.; Robinson, Jacob T.

    2015-01-01

    Patterned illumination using a digital micromirror device (DMD) is a powerful tool for optogenetics. Compared to a scanning laser, DMDs are inexpensive and can easily create complex illumination patterns. Combining these complex spatiotemporal illumination patterns with optogenetics allows DMD-equipped microscopes to probe neural circuits by selectively manipulating the activity of many individual cells or many subcellular regions at the same time. To use DMDs to study neural activity, scientists must develop specialized software to coordinate optical stimulation patterns with the acquisition of electrophysiological and fluorescence data. To meet this growing need we have developed an open source optical pattern generation software for neuroscience—NeuroPG—that combines, DMD control, sample visualization, and data acquisition in one application. Built on a MATLAB platform, NeuroPG can also process, analyze, and visualize data. The software is designed specifically for the Mightex Polygon400; however, as an open source package, NeuroPG can be modified to incorporate any data acquisition, imaging, or illumination equipment that is compatible with MATLAB’s Data Acquisition and Image Acquisition toolboxes. PMID:25784873

  17. Distributed agile software development for the SKA

    NASA Astrophysics Data System (ADS)

    Wicenec, Andreas; Parsons, Rebecca; Kitaeff, Slava; Vinsen, Kevin; Wu, Chen; Nelson, Paul; Reed, David

    2012-09-01

    The SKA software will most probably be developed by many groups distributed across the globe and coming from dierent backgrounds, like industries and research institutions. The SKA software subsystems will have to cover a very wide range of dierent areas, but still they have to react and work together like a single system to achieve the scientic goals and satisfy the challenging data ow requirements. Designing and developing such a system in a distributed fashion requires proper tools and the setup of an environment to allow for ecient detection and tracking of interface and integration issues in particular in a timely way. Agile development can provide much faster feedback mechanisms and also much tighter collaboration between the customer (scientist) and the developer. Continuous integration and continuous deployment on the other hand can provide much faster feedback of integration issues from the system level to the subsystem developers. This paper describes the results obtained from trialing a potential SKA development environment based on existing science software development processes like ALMA, the expected distribution of the groups potentially involved in the SKA development and experience gained in the development of large scale commercial software projects.

  18. ibex: An open infrastructure software platform to facilitate collaborative work in radiomics

    PubMed Central

    Zhang, Lifei; Fried, David V.; Fave, Xenia J.; Hunter, Luke A.; Court, Laurence E.

    2015-01-01

    Purpose: Radiomics, which is the high-throughput extraction and analysis of quantitative image features, has been shown to have considerable potential to quantify the tumor phenotype. However, at present, a lack of software infrastructure has impeded the development of radiomics and its applications. Therefore, the authors developed the imaging biomarker explorer (ibex), an open infrastructure software platform that flexibly supports common radiomics workflow tasks such as multimodality image data import and review, development of feature extraction algorithms, model validation, and consistent data sharing among multiple institutions. Methods: The ibex software package was developed using the matlab and c/c++ programming languages. The software architecture deploys the modern model-view-controller, unit testing, and function handle programming concepts to isolate each quantitative imaging analysis task, to validate if their relevant data and algorithms are fit for use, and to plug in new modules. On one hand, ibex is self-contained and ready to use: it has implemented common data importers, common image filters, and common feature extraction algorithms. On the other hand, ibex provides an integrated development environment on top of matlab and c/c++, so users are not limited to its built-in functions. In the ibex developer studio, users can plug in, debug, and test new algorithms, extending ibex’s functionality. ibex also supports quality assurance for data and feature algorithms: image data, regions of interest, and feature algorithm-related data can be reviewed, validated, and/or modified. More importantly, two key elements in collaborative workflows, the consistency of data sharing and the reproducibility of calculation result, are embedded in the ibex workflow: image data, feature algorithms, and model validation including newly developed ones from different users can be easily and consistently shared so that results can be more easily reproduced between

  19. IBEX: An open infrastructure software platform to facilitate collaborative work in radiomics

    SciTech Connect

    Zhang, Lifei; Yang, Jinzhong; Fried, David V.; Fave, Xenia J.; Hunter, Luke A.; Court, Laurence E.

    2015-03-15

    Purpose: Radiomics, which is the high-throughput extraction and analysis of quantitative image features, has been shown to have considerable potential to quantify the tumor phenotype. However, at present, a lack of software infrastructure has impeded the development of radiomics and its applications. Therefore, the authors developed the imaging biomarker explorer (IBEX), an open infrastructure software platform that flexibly supports common radiomics workflow tasks such as multimodality image data import and review, development of feature extraction algorithms, model validation, and consistent data sharing among multiple institutions. Methods: The IBEX software package was developed using the MATLAB and C/C++ programming languages. The software architecture deploys the modern model-view-controller, unit testing, and function handle programming concepts to isolate each quantitative imaging analysis task, to validate if their relevant data and algorithms are fit for use, and to plug in new modules. On one hand, IBEX is self-contained and ready to use: it has implemented common data importers, common image filters, and common feature extraction algorithms. On the other hand, IBEX provides an integrated development environment on top of MATLAB and C/C++, so users are not limited to its built-in functions. In the IBEX developer studio, users can plug in, debug, and test new algorithms, extending IBEX’s functionality. IBEX also supports quality assurance for data and feature algorithms: image data, regions of interest, and feature algorithm-related data can be reviewed, validated, and/or modified. More importantly, two key elements in collaborative workflows, the consistency of data sharing and the reproducibility of calculation result, are embedded in the IBEX workflow: image data, feature algorithms, and model validation including newly developed ones from different users can be easily and consistently shared so that results can be more easily reproduced between

  20. Engineering software development with HyperCard

    NASA Technical Reports Server (NTRS)

    Darko, Robert J.

    1990-01-01

    The successful and unsuccessful techniques used in the development of software using HyperCard are described. The viability of the HyperCard for engineering is evaluated and the future use of HyperCard by this particular group of developers is discussed.

  1. Modular Open-Source Software for Item Factor Analysis

    ERIC Educational Resources Information Center

    Pritikin, Joshua N.; Hunter, Micheal D.; Boker, Steven M.

    2015-01-01

    This article introduces an item factor analysis (IFA) module for "OpenMx," a free, open-source, and modular statistical modeling package that runs within the R programming environment on GNU/Linux, Mac OS X, and Microsoft Windows. The IFA module offers a novel model specification language that is well suited to programmatic generation…

  2. Global Software Development with Cloud Platforms

    NASA Astrophysics Data System (ADS)

    Yara, Pavan; Ramachandran, Ramaseshan; Balasubramanian, Gayathri; Muthuswamy, Karthik; Chandrasekar, Divya

    Offshore and outsourced distributed software development models and processes are facing challenges, previously unknown, with respect to computing capacity, bandwidth, storage, security, complexity, reliability, and business uncertainty. Clouds promise to address these challenges by adopting recent advances in virtualization, parallel and distributed systems, utility computing, and software services. In this paper, we envision a cloud-based platform that addresses some of these core problems. We outline a generic cloud architecture, its design and our first implementation results for three cloud forms - a compute cloud, a storage cloud and a cloud-based software service- in the context of global distributed software development (GSD). Our ”compute cloud” provides computational services such as continuous code integration and a compile server farm, ”storage cloud” offers storage (block or file-based) services with an on-line virtual storage service, whereas the on-line virtual labs represent a useful cloud service. We note some of the use cases for clouds in GSD, the lessons learned with our prototypes and identify challenges that must be conquered before realizing the full business benefits. We believe that in the future, software practitioners will focus more on these cloud computing platforms and see clouds as a means to supporting a ecosystem of clients, developers and other key stakeholders.

  3. Firing Room Remote Application Software Development

    NASA Technical Reports Server (NTRS)

    Liu, Kan

    2014-01-01

    The Engineering and Technology Directorate (NE) at National Aeronautics and Space Administration (NASA) Kennedy Space Center (KSC) is designing a new command and control system for the checkout and launch of Space Launch System (SLS) and future rockets. The purposes of the semester long internship as a remote application software developer include the design, development, integration, and verification of the software and hardware in the firing rooms, in particular with the Mobile Launcher (ML) Launch Accessories subsystem. In addition, a Conversion Fusion project was created to show specific approved checkout and launch engineering data for public-friendly display purposes.

  4. Automated real-time software development

    NASA Technical Reports Server (NTRS)

    Jones, Denise R.; Walker, Carrie K.; Turkovich, John J.

    1993-01-01

    A Computer-Aided Software Engineering (CASE) system has been developed at the Charles Stark Draper Laboratory (CSDL) under the direction of the NASA Langley Research Center. The CSDL CASE tool provides an automated method of generating source code and hard copy documentation from functional application engineering specifications. The goal is to significantly reduce the cost of developing and maintaining real-time scientific and engineering software while increasing system reliability. This paper describes CSDL CASE and discusses demonstrations that used the tool to automatically generate real-time application code.

  5. Achieving Better Buying Power Through Acquisition of Open Architecture Software Systems for Web-Based and Mobile Devices

    DTIC Science & Technology

    2015-04-30

    environments. The OZONE family of products is designed as a presentation layer toolkit that can be rapidly deployed in a variety of mission contexts...in the field. This would be accomplished through access to online repositories of software apps or user-interface widgets. The Ozone Widget Framework...OWF) is a government open source software (GOSS) effort that is central to such agile OA system development. The OZONE family of products includes

  6. Reusable Software and Open Data Incorporate Ecological Understanding To Optimize Agriculture and Improveme Crops.

    NASA Astrophysics Data System (ADS)

    LeBauer, D.

    2015-12-01

    Humans need a secure and sustainable food supply, and science can help. We have an opportunity to transform agriculture by combining knowledge of organisms and ecosystems to engineer ecosystems that sustainably produce food, fuel, and other services. The challenge is that the information we have. Measurements, theories, and laws found in publications, notebooks, measurements, software, and human brains are difficult to combine. We homogenize, encode, and automate the synthesis of data and mechanistic understanding in a way that links understanding at different scales and across domains. This allows extrapolation, prediction, and assessment. Reusable components allow automated construction of new knowledge that can be used to assess, predict, and optimize agro-ecosystems. Developing reusable software and open-access databases is hard, and examples will illustrate how we use the Predictive Ecosystem Analyzer (PEcAn, pecanproject.org), the Biofuel Ecophysiological Traits and Yields database (BETYdb, betydb.org), and ecophysiological crop models to predict crop yield, decide which crops to plant, and which traits can be selected for the next generation of data driven crop improvement. A next step is to automate the use of sensors mounted on robots, drones, and tractors to assess plants in the field. The TERRA Reference Phenotyping Platform (TERRA-Ref, terraref.github.io) will provide an open access database and computing platform on which researchers can use and develop tools that use sensor data to assess and manage agricultural and other terrestrial ecosystems. TERRA-Ref will adopt existing standards and develop modular software components and common interfaces, in collaboration with researchers from iPlant, NEON, AgMIP, USDA, rOpenSci, ARPA-E, many scientists and industry partners. Our goal is to advance science by enabling efficient use, reuse, exchange, and creation of knowledge.

  7. ACQ4: an open-source software platform for data acquisition and analysis in neurophysiology research

    PubMed Central

    Campagnola, Luke; Kratz, Megan B.; Manis, Paul B.

    2014-01-01

    The complexity of modern neurophysiology experiments requires specialized software to coordinate multiple acquisition devices and analyze the collected data. We have developed ACQ4, an open-source software platform for performing data acquisition and analysis in experimental neurophysiology. This software integrates the tasks of acquiring, managing, and analyzing experimental data. ACQ4 has been used primarily for standard patch-clamp electrophysiology, laser scanning photostimulation, multiphoton microscopy, intrinsic imaging, and calcium imaging. The system is highly modular, which facilitates the addition of new devices and functionality. The modules included with ACQ4 provide for rapid construction of acquisition protocols, live video display, and customizable analysis tools. Position-aware data collection allows automated construction of image mosaics and registration of images with 3-dimensional anatomical atlases. ACQ4 uses free and open-source tools including Python, NumPy/SciPy for numerical computation, PyQt for the user interface, and PyQtGraph for scientific graphics. Supported hardware includes cameras, patch clamp amplifiers, scanning mirrors, lasers, shutters, Pockels cells, motorized stages, and more. ACQ4 is available for download at http://www.acq4.org. PMID:24523692

  8. Implementing an integrative multi-agent clinical decision support system with open source software.

    PubMed

    Sayyad Shirabad, Jelber; Wilk, Szymon; Michalowski, Wojtek; Farion, Ken

    2012-02-01

    Clinical decision making is a complex multi-stage process. Decision support can play an important role at each stage of this process. At present, the majority of clinical decision support systems have been focused on supporting only certain stages. In this paper we present the design and implementation of MET3-a prototype multi-agent system providing an integrative decision support that spans over the entire decision making process. The system helps physicians with data collection, diagnosis formulation, treatment planning and finding supporting evidence. MET3 integrates with external hospital information systems via HL7 messages and runs on various computing platforms available at the point of care (e.g., tablet computers, mobile phones). Building MET3 required sophisticated and reliable software technologies. In the past decade the open source software movement has produced mature, stable, industrial strength software systems with a large user base. Therefore, one of the decisions that should be considered before developing or acquiring a decision support system is whether or not one could use open source technologies instead of proprietary ones. We believe MET3 shows that the answer to this question is positive.

  9. ACQ4: an open-source software platform for data acquisition and analysis in neurophysiology research.

    PubMed

    Campagnola, Luke; Kratz, Megan B; Manis, Paul B

    2014-01-01

    The complexity of modern neurophysiology experiments requires specialized software to coordinate multiple acquisition devices and analyze the collected data. We have developed ACQ4, an open-source software platform for performing data acquisition and analysis in experimental neurophysiology. This software integrates the tasks of acquiring, managing, and analyzing experimental data. ACQ4 has been used primarily for standard patch-clamp electrophysiology, laser scanning photostimulation, multiphoton microscopy, intrinsic imaging, and calcium imaging. The system is highly modular, which facilitates the addition of new devices and functionality. The modules included with ACQ4 provide for rapid construction of acquisition protocols, live video display, and customizable analysis tools. Position-aware data collection allows automated construction of image mosaics and registration of images with 3-dimensional anatomical atlases. ACQ4 uses free and open-source tools including Python, NumPy/SciPy for numerical computation, PyQt for the user interface, and PyQtGraph for scientific graphics. Supported hardware includes cameras, patch clamp amplifiers, scanning mirrors, lasers, shutters, Pockels cells, motorized stages, and more. ACQ4 is available for download at http://www.acq4.org.

  10. The Life Cycle of an OpenStudio Measure: Development, Testing, Distribution, and Application

    SciTech Connect

    2016-08-12

    An OpenStudio Measure is a script that can manipulate an OpenStudio model and associated data to apply energy conservation measures (ECMs), run supplemental simulations, or visualize simulation results. The OpenStudio software development kit (SDK) and accessibility of the Ruby scripting language makes measure authorship accessible to both software developers and energy modelers. This paper discusses the life cycle of an OpenStudio Measure from development, testing, and distribution, to application.

  11. A Quantitative Study of Global Software Development Teams, Requirements, and Software Projects

    ERIC Educational Resources Information Center

    Parker, Linda L.

    2016-01-01

    The study explored the relationship between global software development teams, effective software requirements, and stakeholders' perception of successful software development projects within the field of information technology management. It examined the critical relationship between Global Software Development (GSD) teams creating effective…

  12. Software development methodology for high consequence systems

    SciTech Connect

    Baca, L.S.; Bouchard, J.F.; Collins, E.W.; Eisenhour, M.; Neidigk, D.D.; Shortencarier, M.J.; Trellue, P.A.

    1997-10-01

    This document describes a Software Development Methodology for High Consequence Systems. A High Consequence System is a system whose failure could lead to serious injury, loss of life, destruction of valuable resources, unauthorized use, damaged reputation or loss of credibility or compromise of protected information. This methodology can be scaled for use in projects of any size and complexity and does not prescribe any specific software engineering technology. Tasks are described that ensure software is developed in a controlled environment. The effort needed to complete the tasks will vary according to the size, complexity, and risks of the project. The emphasis of this methodology is on obtaining the desired attributes for each individual High Consequence System.

  13. Chemical Descriptors Library (CDL): a generic, open source software library for chemical informatics.

    PubMed

    Sykora, Vladimir J; Leahy, David E

    2008-10-01

    In this article the Chemical Descriptors Library (CDL), a generic, open source software library for chemical informatics is introduced. The library is written using standard-compliant C++ programming language. The CDL provides a generic interface for traversing the structure of a molecular graph and accessing its properties. As a result, the software offers flexibility, reusability, and maintainability. This interface has been used to develop several chemical informatics algorithms, including molecular text format parsers and writers; substructure, pharmacophore, and atom type fingerprints; and both common substructure search and SMARTS search. The algorithms are described and evaluated on 3 data sets comprising 1000, 50000, and 100000 small molecules, respectively. The properties of the algorithms in terms of complexity analysis and processing times are presented and discussed.

  14. A Survey of Usability Practices in Free/Libre/Open Source Software

    NASA Astrophysics Data System (ADS)

    Paul, Celeste Lyn

    A review of case studies about usability in eight Free/Libre/Open Source Software (FLOSS) projects showed that an important issue regarding a usability initiative in the project was the lack of user research. User research is a key component in the user-centered design (UCD) process and a necessary step for creating usable products. Reasons why FLOSS projects suffered from a lack of user research included poor or unclear project leadership, cultural differences between developer and designers, and a lack of usability engineers. By identifying these critical issues, the FLOSS usability community can begin addressing problems in the efficacy of usability activities and work towards creating more usable FLOSS products.

  15. The advanced software development workstation project

    NASA Technical Reports Server (NTRS)

    Fridge, Ernest M., III; Pitman, Charles L.

    1991-01-01

    The Advanced Software Development Workstation (ASDW) task is researching and developing the technologies required to support Computer Aided Software Engineering (CASE) with the emphasis on those advanced methods, tools, and processes that will be of benefit to support all NASA programs. Immediate goals are to provide research and prototype tools that will increase productivity, in the near term, in projects such as the Software Support Environment (SSE), the Space Station Control Center (SSCC), and the Flight Analysis and Design System (FADS) which will be used to support the Space Shuttle and Space Station Freedom. Goals also include providing technology for development, evolution, maintenance, and operations. The technologies under research and development in the ASDW project are targeted to provide productivity enhancements during the software life cycle phase of enterprise and information system modeling, requirements generation and analysis, system design and coding, and system use and maintenance. On-line user's guides will assist users in operating the developed information system with knowledge base expert assistance.

  16. Going open source: some lessons learned from the development of OpenRecLink.

    PubMed

    Camargo Jr, Kenneth Rochel de; Coeli, Claudia Medina

    2015-02-01

    Record linkage is the process of identifying and merging records across different databases belonging to the same entity. The health sector is one of the pioneering areas of record linkage techniques applications. In 1998 we began the development of a software package, called RecLink that implemented probabilistic record linkage techniques. In this article we report the development of a new, open-source version of that program, now named OpenRecLink. The aim of this article is to present the main characteristics of the new version and some of the lessons learned during its development. The new version is a total rewrite of the program, based on three goals: (1) to migrate to a free and open source software (FOSS) platform; (2) to implement a multiplatform version; (3) to implement the support for internationalization. We describe the tools that we adopted, the process of development and some of the problems encountered.

  17. A Business Case Study of Open Source Software

    DTIC Science & Technology

    2001-07-01

    softlinux.com.br www.softlinux.com.br Investigacion y Desarrollo Agora www.id-agora.com SOT Finnish Software Engineering www.sot.com Iplabs www.iplabs.ru...College, Air University, June 11, 1999, http://ceu.fi.udc.es/GPUL/ articulos /varios/US_DoD_and_OSS.txt. 48. Slackware, www.slackware.com. 49. Slater, Derek

  18. Open University Staff Development Materials for Tutors of Open Learning.

    ERIC Educational Resources Information Center

    Langley, Anne; Perkins, Isabel

    1999-01-01

    Discusses the evolution of staff development and the new Supporting Open Learners' (SOL) materials at the United Kingdom Open University. Outlines objectives of the SOL program. Discusses issues arising from use of SOL materials, including instructional attitudes; modelling good practice; developing the reflective practitioner; perceived value;…

  19. Is There Such a Thing as Free Software? The Pros and Cons of Open-Source Software

    ERIC Educational Resources Information Center

    Trappler, Thomas J.

    2009-01-01

    Today's higher education environment is marked by heightened accountability and decreased budgets. In such an environment, no higher education institution can afford to ignore alternative approaches that could result in more effective and less costly solutions. Open-source software (OSS) can serve as a viable alternative to traditional proprietary…

  20. The Software First System Development Methodology

    DTIC Science & Technology

    1989-02-15

    SCII85] J. Schill, R. Smeaton , R. Jackman, "The Conversion of Commands & Control Software to Ada: Experiences and Lessons Learned", A, Vol. IV...NY., John Wiley & Sons, Inc., 1984. [WILL87] Williams, T. "Real-Time Development Tools Aid Embedded Control System Design," Computer Desitn, October

  1. A Quantitative Analysis of Open Source Software's Acceptability as Production-Quality Code

    ERIC Educational Resources Information Center

    Fischer, Michael

    2011-01-01

    The difficulty in writing defect-free software has been long acknowledged both by academia and industry. A constant battle occurs as developers seek to craft software that works within aggressive business schedules and deadlines. Many tools and techniques are used in attempt to manage these software projects. Software metrics are a tool that has…

  2. Development of a flight software testing methodology

    NASA Technical Reports Server (NTRS)

    Mccluskey, E. J.; Andrews, D. M.

    1985-01-01

    The research to develop a testing methodology for flight software is described. An experiment was conducted in using assertions to dynamically test digital flight control software. The experiment showed that 87% of typical errors introduced into the program would be detected by assertions. Detailed analysis of the test data showed that the number of assertions needed to detect those errors could be reduced to a minimal set. The analysis also revealed that the most effective assertions tested program parameters that provided greater indirect (collateral) testing of other parameters. In addition, a prototype watchdog task system was built to evaluate the effectiveness of executing assertions in parallel by using the multitasking features of Ada.

  3. The State of Open Source Electronic Health Record Projects: A Software Anthropology Study

    PubMed Central

    2017-01-01

    Background Electronic health records (EHR) are a key tool in managing and storing patients’ information. Currently, there are over 50 open source EHR systems available. Functionality and usability are important factors for determining the success of any system. These factors are often a direct reflection of the domain knowledge and developers’ motivations. However, few published studies have focused on the characteristics of free and open source software (F/OSS) EHR systems and none to date have discussed the motivation, knowledge background, and demographic characteristics of the developers involved in open source EHR projects. Objective This study analyzed the characteristics of prevailing F/OSS EHR systems and aimed to provide an understanding of the motivation, knowledge background, and characteristics of the developers. Methods This study identified F/OSS EHR projects on SourceForge and other websites from May to July 2014. Projects were classified and characterized by license type, downloads, programming languages, spoken languages, project age, development status, supporting materials, top downloads by country, and whether they were “certified” EHRs. Health care F/OSS developers were also surveyed using an online survey. Results At the time of the assessment, we uncovered 54 open source EHR projects, but only four of them had been successfully certified under the Office of the National Coordinator for Health Information Technology (ONC Health IT) Certification Program. In the majority of cases, the open source EHR software was downloaded by users in the United States (64.07%, 148,666/232,034), underscoring that there is a significant interest in EHR open source applications in the United States. A survey of EHR open source developers was conducted and a total of 103 developers responded to the online questionnaire. The majority of EHR F/OSS developers (65.3%, 66/101) are participating in F/OSS projects as part of a paid activity and only 25.7% (26

  4. Lean Development with the Morpheus Simulation Software

    NASA Technical Reports Server (NTRS)

    Brogley, Aaron C.

    2013-01-01

    The Morpheus project is an autonomous robotic testbed currently in development at NASA's Johnson Space Center (JSC) with support from other centers. Its primary objectives are to test new 'green' fuel propulsion systems and to demonstrate the capability of the Autonomous Lander Hazard Avoidance Technology (ALHAT) sensor, provided by the Jet Propulsion Laboratory (JPL) on a lunar landing trajectory. If successful, these technologies and lessons learned from the Morpheus testing cycle may be incorporated into a landing descent vehicle used on the moon, an asteroid, or Mars. In an effort to reduce development costs and cycle time, the project employs lean development engineering practices in its development of flight and simulation software. The Morpheus simulation makes use of existing software packages where possible to reduce the development time. The development and testing of flight software occurs primarily through the frequent test operation of the vehicle and incrementally increasing the scope of the test. With rapid development cycles, risk of loss of the vehicle and loss of the mission are possible, but efficient progress in development would not be possible without that risk.

  5. Rapid Development of Interferometric Software Using MIRIAD and Python

    NASA Astrophysics Data System (ADS)

    Williams, Peter K. G.; Law, Casey J.; Bower, Geoffrey C.

    2012-06-01

    State-of-the-art radio interferometers are complex systems that unleash torrents of data. If current and planned instruments are to routinely meet their performance goals, standard analysis techniques must be significantly improved, becoming simultaneously more sophisticated, more automatic, and more scalable. While there is no shortage of ideas for next-generation algorithms, there is a shortage of development resources, so it is vital that programming environments for interferometric software allow for rapid, flexible development. We present an open-source software package, miriad-python, that provides access to the MIRIAD interferometric reduction system in the Python programming language. The modular design of MIRIAD and the high productivity and accessibility of Python provide an excellent foundation for rapid development of interferometric software. Several other projects with similar goals exist, and we describe them and compare miriad-python with them in detail. Along with an overview of the package design, we present sample code and applications, including the detection of millisecond astrophysical transients, determination and application of nonstandard calibration parameters, interactive data visualization, and a reduction pipeline using a directed acyclic graph dependency model analogous to that of the traditional UNIX tool make. The key aspects of the miriad-python software project are documented. We find that miriad-python provides an extremely effective environment for prototyping new interferometric software, though certain existing packages provide far more infrastructure for some applications. While equivalent software written in compiled languages can be much faster than Python, there are many situations in which execution time is profitably exchanged for speed of development, code readability, accessibility to nonexpert programmers, quick interlinking with foreign software packages, and other virtues of the Python language.

  6. Open Source Scanning Probe Microscopy Control Software package GXSM

    SciTech Connect

    Zahl, P.; Wagner, T.; Moller, R.; Klust, A.

    2010-05-01

    GXSM is a full featured and modern scanning probe microscopy (SPM) software. It can be used for powerful multidimensional image/data processing, analysis, and visualization. Connected to an instrument, it is operating many different flavors of SPM, e.g., scanning tunneling microscopy and atomic force microscopy or, in general, two-dimensional multichannel data acquisition instruments. The GXSM core can handle different data types, e.g., integer and floating point numbers. An easily extendable plug-in architecture provides many image analysis and manipulation functions. A digital signal processor subsystem runs the feedback loop, generates the scanning signals, and acquires the data during SPM measurements. The programmable GXSM vector probe engine performs virtually any thinkable spectroscopy and manipulation task, such as scanning tunneling spectroscopy or tip formation. The GXSM software is released under the GNU general public license and can be obtained via the internet.

  7. Open Source Scanning Probe Microscopy Control Software Package Gxsm

    SciTech Connect

    Zahl P.; Wagner, T.; Moller, R.; Klust, A.

    2009-08-10

    Gxsm is a full featured and modern scanning probe microscopy (SPM) software. It can be used for powerful multidimensional image/data processing, analysis, and visualization. Connected toan instrument, it is operating many different avors of SPM, e.g., scanning tunneling microscopy(STM) and atomic force microscopy (AFM) or in general two-dimensional multi channel data acquisition instruments. The Gxsm core can handle different data types, e.g., integer and oating point numbers. An easily extendable plug-in architecture provides many image analysis and manipulation functions. A digital signal processor (DSP) subsystem runs the feedback loop, generates the scanning signals and acquires the data during SPM measurements. The programmable Gxsm vector probe engine performs virtually any thinkable spectroscopy and manipulation task, such as scanning tunneling spectroscopy (STS) or tip formation. The Gxsm software is released under the GNU general public license (GPL) and can be obtained via the Internet.

  8. Development of automated conjunctival hyperemia analysis software.

    PubMed

    Sumi, Tamaki; Yoneda, Tsuyoshi; Fukuda, Ken; Hoshikawa, Yasuhiro; Kobayashi, Masahiko; Yanagi, Masahide; Kiuchi, Yoshiaki; Yasumitsu-Lovell, Kahoko; Fukushima, Atsuki

    2013-11-01

    Conjunctival hyperemia is observed in a variety of ocular inflammatory conditions. The evaluation of hyperemia is indispensable for the treatment of patients with ocular inflammation. However, the major methods currently available for evaluation are based on nonquantitative and subjective methods. Therefore, we developed novel software to evaluate bulbar hyperemia quantitatively and objectively. First, we investigated whether the histamine-induced hyperemia of guinea pigs could be quantified by image analysis. Bulbar conjunctival images were taken by means of a digital camera, followed by the binarization of the images and the selection of regions of interest (ROIs) for evaluation. The ROIs were evaluated by counting the number of absolute pixel values. Pixel values peaked significantly 1 minute after histamine challenge was performed and were still increased after 5 minutes. Second, we applied the same method to antigen (ovalbumin)-induced hyperemia of sensitized guinea pigs, acquiring similar results except for the substantial upregulation in the first 5 minutes after challenge. Finally, we analyzed human bulbar hyperemia using the new software we developed especially for human usage. The new software allows the automatic calculation of pixel values once the ROIs have been selected. In our clinical trials, the percentage of blood vessel coverage of ROIs was significantly higher in the images of hyperemia caused by allergic conjunctival diseases and hyperemia induced by Bimatoprost, compared with those of healthy volunteers. We propose that this newly developed automated hyperemia analysis software will be an objective clinical tool for the evaluation of ocular hyperemia.

  9. STARS 2.0: 2nd-generation open-source archiving and query software

    NASA Astrophysics Data System (ADS)

    Winegar, Tom

    2008-07-01

    The Subaru Telescope is in process of developing an open-source alternative to the 1st-generation software and databases (STARS 1) used for archiving and query. For STARS 2, we have chosen PHP and Python for scripting and MySQL as the database software. We have collected feedback from staff and observers, and used this feedback to significantly improve the design and functionality of our future archiving and query software. Archiving - We identified two weaknesses in 1st-generation STARS archiving software: a complex and inflexible table structure and uncoordinated system administration for our business model: taking pictures from the summit and archiving them in both Hawaii and Japan. We adopted a simplified and normalized table structure with passive keyword collection, and we are designing an archive-to-archive file transfer system that automatically reports real-time status and error conditions and permits error recovery. Query - We identified several weaknesses in 1st-generation STARS query software: inflexible query tools, poor sharing of calibration data, and no automatic file transfer mechanisms to observers. We are developing improved query tools and sharing of calibration data, and multi-protocol unassisted file transfer mechanisms for observers. In the process, we have redefined a 'query': from an invisible search result that can only transfer once in-house right now, with little status and error reporting and no error recovery - to a stored search result that can be monitored, transferred to different locations with multiple protocols, reporting status and error conditions and permitting recovery from errors.

  10. Developing collaborative environments - A Holistic software development methodology

    SciTech Connect

    PETERSEN,MARJORIE B.; MITCHINER,JOHN L.

    2000-03-08

    Sandia National Laboratories has been developing technologies to support person-to-person collaboration and the efforts of teams in the business and research communities. The technologies developed include knowledge-based design advisors, knowledge management systems, and streamlined manufacturing supply chains. These collaborative environments in which people can work together sharing information and knowledge have required a new approach to software development. The approach includes an emphasis on the requisite change in business practice that often inhibits user acceptance of collaborative technology. Leveraging the experience from this work, they have established a multidisciplinary approach for developing collaborative software environments. They call this approach ``A Holistic Software Development Methodology''.

  11. Software development tools: A bibliography, appendix C.

    NASA Technical Reports Server (NTRS)

    Riddle, W. E.

    1980-01-01

    A bibliography containing approximately 200 citations on tools which help software developers perform some development task (such as text manipulation, testing, etc.), and which would not necessarily be found as part of a computing facility is given. The bibliography comes from a relatively random sampling of the literature and is not complete. But it is indicative of the nature and range of tools currently being prepared or currently available.

  12. Increasing Open Source Software Integration on the Department of Defense Unclassified Desktop

    DTIC Science & Technology

    2008-06-01

    military software, much of it is absorbed by license fees for computer operating systems and general-purpose office automation applications. Although...many available mature, robust Open Source Software (OSS) solutions. In particular, Linux-based operating systems have helped bring free, open source...thesis examines the feasibility of using OSS, particularly Linux-based operating systems , on unclassified DoD desktop computers. Specific attention is

  13. Open Source Software in Teaching Physics: A Case Study on Vector Algebra and Visual Representations

    ERIC Educational Resources Information Center

    Cataloglu, Erdat

    2006-01-01

    This study aims to report the effort on teaching vector algebra using free open source software (FOSS). Recent studies showed that students have difficulties in learning basic physics concepts. Constructivist learning theories suggest the use of visual and hands-on activities in learning. We will report on the software used for this purpose. The…

  14. Open Source Software (OSS) Adoption Framework for Local Environment and its Comparison

    NASA Astrophysics Data System (ADS)

    Laila, U.; Bukhari, S. F. A.

    According to Business Software Alliance (BSA) Pakistan is ranked in the top 10 countries having highest piracy rate [1]. To overcome the problem of piracy local Information Technology (IT) companies are willing to migrate towards Open Source Software (OSS). Due to this reason need for framework/model for OSS adoption has become more pronounced.

  15. Faculty/Student Surveys Using Open Source Software

    ERIC Educational Resources Information Center

    Kaceli, Sali

    2004-01-01

    This session will highlight an easy survey package which lets non-technical users create surveys, administer surveys, gather results, and view statistics. This is an open source application all managed online via a web browser. By using phpESP, the faculty is given the freedom of creating various surveys at their convenience and link them to their…

  16. Open-source hardware and software and web application for gamma dose rate network operation.

    PubMed

    Luff, R; Zähringer, M; Harms, W; Bleher, M; Prommer, B; Stöhlker, U

    2014-08-01

    The German Federal Office for Radiation Protection operates a network of about 1800 gamma dose rate stations as a part of the national emergency preparedness plan. Each of the six network centres is capable of operating the network alone. Most of the used hardware and software have been developed in-house under open-source license. Short development cycles and close cooperation between developers and users ensure robustness, transparency and fast maintenance procedures, thus avoiding unnecessary complex solutions. This also reduces the overall costs of the network operation. An easy-to-expand web interface has been developed to make the complete system available to other interested network operators in order to increase cooperation between different countries. The interface is also regularly in use for education during scholarships of trainees supported, e.g. by the 'International Atomic Energy Agency' to operate a local area dose rate monitoring test network.

  17. Application development using the ALMA common software

    NASA Astrophysics Data System (ADS)

    Chiozzi, G.; Caproni, A.; Jeram, B.; Sommer, H.; Wang, V.; Plesko, M.; Sekoranja, M.; Zagar, K.; Fugate, D. W.; Harrington, S.; Di Marcantonio, P.; Cirami, R.

    2006-06-01

    The ALMA Common Software (ACS) provides the software infrastructure used by ALMA and by several other telescope projects, thanks also to the choice of adopting the LGPL public license. ACS is a set of application frameworks providing the basic services needed for object oriented distributed computing. Among these are transparent remote object invocation, object deployment and location based on a container/component model, distributed error, alarm handling, logging and events. ACS is based on CORBA and built on top of free CORBA implementations. Free software is extensively used wherever possible. The general architecture of ACS was presented at SPIE 2002. ACS has been under development for 6 years and it is midway through its development life. Many applications have been written using ACS; the ALMA test facility, APEX and other telescopes are running systems based on ACS. This is therefore a good time to look back and see what have been until now the strong and the weak points of ACS in terms of architecture and implementation. In this perspective, it is very important to analyze the applications based on ACS, the feedback received by the users and the impact that this feedback has had on the development of ACS itself, by favoring the development of some features with respect to others. The purpose of this paper is to describe the results of this analysis and discuss what we would like to do in order to extend and improve ACS in the coming years, in particular to make application development easier and more efficient.

  18. Documenting the decision structure in software development

    NASA Technical Reports Server (NTRS)

    Wild, J. Christian; Maly, Kurt; Shen, Stewart N.

    1990-01-01

    Current software development paradigms focus on the products of the development process. Much of the decision making process which produces these products is outside the scope of these paradigms. The Decision-Based Software Development (DBSD) paradigm views the design process as a series of interrelated decisions which involve the identification and articulation of problems, alternates, solutions and justifications. Decisions made by programmers and analysts are recorded in a project data base. Unresolved problems are also recorded and resources for their resolution are allocated by management according to the overall development strategy. This decision structure is linked to the products affected by the relevant decision and provides a process oriented view of the resulted system. Software maintenance uses this decision view of the system to understand the rationale behind the decisions affecting the part of the system to be modified. D-HyperCase, a prototype Decision-Based Hypermedia System is described and results of applying the DBSD approach during its development are presented.

  19. Custom software development for use in a clinical laboratory

    PubMed Central

    Sinard, John H.; Gershkovich, Peter

    2012-01-01

    In-house software development for use in a clinical laboratory is a controversial issue. Many of the objections raised are based on outdated software development practices, an exaggeration of the risks involved, and an underestimation of the benefits that can be realized. Buy versus build analyses typically do not consider total costs of ownership, and unfortunately decisions are often made by people who are not directly affected by the workflow obstacles or benefits that result from those decisions. We have been developing custom software for clinical use for over a decade, and this article presents our perspective on this practice. A complete analysis of the decision to develop or purchase must ultimately examine how the end result will mesh with the departmental workflow, and custom-developed solutions typically can have the greater positive impact on efficiency and productivity, substantially altering the decision balance sheet. Involving the end-users in preparation of the functional specifications is crucial to the success of the process. A large development team is not needed, and even a single programmer can develop significant solutions. Many of the risks associated with custom development can be mitigated by a well-structured development process, use of open-source tools, and embracing an agile development philosophy. In-house solutions have the significant advantage of being adaptable to changing departmental needs, contributing to efficient and higher quality patient care. PMID:23372985

  20. Ethics and Morality in Software Development: A Developer's Perspective

    ERIC Educational Resources Information Center

    Stephenson, James H.

    2010-01-01

    Computers and other digital devices have become ubiquitous in our lives. Almost all aspects of our lives are in part or wholly impacted by computers and the software that runs on them. Unknowingly, we are placing our livelihoods and even our lives in the hands unknown software developers. Ethical and moral decisions made during software…

  1. Current practice in software development for computational neuroscience and how to improve it.

    PubMed

    Gewaltig, Marc-Oliver; Cannon, Robert

    2014-01-01

    Almost all research work in computational neuroscience involves software. As researchers try to understand ever more complex systems, there is a continual need for software with new capabilities. Because of the wide range of questions being investigated, new software is often developed rapidly by individuals or small groups. In these cases, it can be hard to demonstrate that the software gives the right results. Software developers are often open about the code they produce and willing to share it, but there is little appreciation among potential users of the great diversity of software development practices and end results, and how this affects the suitability of software tools for use in research projects. To help clarify these issues, we have reviewed a range of software tools and asked how the culture and practice of software development affects their validity and trustworthiness. We identified four key questions that can be used to categorize software projects and correlate them with the type of product that results. The first question addresses what is being produced. The other three concern why, how, and by whom the work is done. The answers to these questions show strong correlations with the nature of the software being produced, and its suitability for particular purposes. Based on our findings, we suggest ways in which current software development practice in computational neuroscience can be improved and propose checklists to help developers, reviewers, and scientists to assess the quality of software and whether particular pieces of software are ready for use in research.

  2. New softwares for automated microsatellite marker development

    PubMed Central

    Martins, Wellington; de Sousa, Daniel; Proite, Karina; Guimarães, Patrícia; Moretzsohn, Marcio; Bertioli, David

    2006-01-01

    Microsatellites are repeated small sequence motifs that are highly polymorphic and abundant in the genomes of eukaryotes. Often they are the molecular markers of choice. To aid the development of microsatellite markers we have developed a module that integrates a program for the detection of microsatellites (TROLL), with the sequence assembly and analysis software, the Staden Package. The module has easily adjustable parameters for microsatellite lengths and base pair quality control. Starting with large datasets of unassembled sequence data in the form of chromatograms and/or text data, it enables the creation of a compact database consisting of the processed and assembled microsatellite containing sequences. For the final phase of primer design, we developed a program that accepts the multi-sequence ‘experiment file’ format as input and produces a list of primer pairs for amplification of microsatellite markers. The program can take into account the quality values of consensus bases, improving success rate of primer pairs in PCR. The software is freely available and simple to install in both Windows and Unix-based operating systems. Here we demonstrate the software by developing primer pairs for 427 new candidate markers for peanut. PMID:16493138

  3. New softwares for automated microsatellite marker development.

    PubMed

    Martins, Wellington; de Sousa, Daniel; Proite, Karina; Guimarães, Patrícia; Moretzsohn, Marcio; Bertioli, David

    2006-02-21

    Microsatellites are repeated small sequence motifs that are highly polymorphic and abundant in the genomes of eukaryotes. Often they are the molecular markers of choice. To aid the development of microsatellite markers we have developed a module that integrates a program for the detection of microsatellites (TROLL), with the sequence assembly and analysis software, the Staden Package. The module has easily adjustable parameters for microsatellite lengths and base pair quality control. Starting with large datasets of unassembled sequence data in the form of chromatograms and/or text data, it enables the creation of a compact database consisting of the processed and assembled microsatellite containing sequences. For the final phase of primer design, we developed a program that accepts the multi-sequence 'experiment file' format as input and produces a list of primer pairs for amplification of microsatellite markers. The program can take into account the quality values of consensus bases, improving success rate of primer pairs in PCR. The software is freely available and simple to install in both Windows and Unix-based operating systems. Here we demonstrate the software by developing primer pairs for 427 new candidate markers for peanut.

  4. CMD-3 detector offline software development

    NASA Astrophysics Data System (ADS)

    Anisenkov, A.; Ignatov, F.; Pirogov, S.; Sibidanov, A.; Viduk, S.; Zaytsev, A.

    2010-04-01

    CMD-3 is the general purpose cryogenic magnetic detector for VEPP-2000 electron-positron collider, which is being commissioned at Budker Institute of Nuclear Physics (BINP, Novosibirsk, Russia). The main aspects of physical program of the experiment are precision measurements of hadronic cross sections, study of known and search for new vector mesons, study of the nbar nand pbar pproduction cross sections in the vicinity of the threshold and search for exotic hadrons in the region of center of mass energy below 2 GeV. This contribution gives a general design overview and a status of implementation of CMD-3 offline software for reconstruction, simulation, visualization and storage management. Software design standards for this project are object oriented programming techniques, C++ as a main language, Geant4 as an only simulation tool, Geant4 based detector geometry description, CLHEP library based primary generators, ROOT toolbox as a persistency manager and Scientific Linux as a main platform. The dedicated software development framework (Cmd3Fwk) was implemented in order to be the basic software integration solution and a high level persistency manager. The key features of the framework are modularity, dynamic data processing chain handling according to the XML configuration of reconstruction modules and on-demand data provisioning mechanisms.

  5. Software Quality Perceptions of Stakeholders Involved in the Software Development Process

    ERIC Educational Resources Information Center

    Padmanabhan, Priya

    2013-01-01

    Software quality is one of the primary determinants of project management success. Stakeholders involved in software development widely agree that quality is important (Barney and Wohlin 2009). However, they may differ on what constitutes software quality, and which of its attributes are more important than others. Although, software quality…

  6. Developing Fault Models for Space Mission Software

    NASA Technical Reports Server (NTRS)

    Nikora, Allen P.; Munson, John C.

    2003-01-01

    A viewgraph presentation on the development of fault models for space mission software is shown. The topics include: 1) Goal: Improve Understanding of Technology Fault Generation Process; 2) Required Measurement; 3) Measuring Structural Evolution; 4) Module Attributes; 5) Principal Components of Raw Metrics; 6) The Measurement Process; 7) View of Structural Evolution at the System and Module Level; 8) Identifying and Counting Faults; 9) Fault Enumeration; 10) Modeling Fault Content; 11) Modeling Results; 12) Current and Future Work; and 13) Discussion and Conclusions.

  7. General object-oriented software development

    NASA Technical Reports Server (NTRS)

    Seidewitz, Edwin V.; Stark, Mike

    1986-01-01

    Object-oriented design techniques are gaining increasing popularity for use with the Ada programming language. A general approach to object-oriented design which synthesizes the principles of previous object-oriented methods into the overall software life-cycle, providing transitions from specification to design and from design to code. It therefore provides the basis for a general object-oriented development methodology.

  8. The Implications of Incumbent Intellectual Property Strategies for Open Source Software Success and Commercialization

    ERIC Educational Resources Information Center

    Wen, Wen

    2012-01-01

    While open source software (OSS) emphasizes open access to the source code and avoids the use of formal appropriability mechanisms, there has been little understanding of how the existence and exercise of formal intellectual property rights (IPR) such as patents influence the direction of OSS innovation. This dissertation seeks to bridge this gap…

  9. Perceptions of Open Source versus Commercial Software: Is Higher Education Still on the Fence?

    ERIC Educational Resources Information Center

    van Rooij, Shahron Williams

    2007-01-01

    This exploratory study investigated the perceptions of technology and academic decision-makers about open source benefits and risks versus commercial software applications. The study also explored reactions to a concept for outsourcing campus-wide deployment and maintenance of open source. Data collected from telephone interviews were analyzed,…

  10. APPLICATION OF SOFTWARE QUALITY ASSURANCE CONCEPTS AND PROCEDURES TO ENVIORNMENTAL RESEARCH INVOLVING SOFTWARE DEVELOPMENT

    EPA Science Inventory

    As EPA’s environmental research expands into new areas that involve the development of software, quality assurance concepts and procedures that were originally developed for environmental data collection may not be appropriate. Fortunately, software quality assurance is a ...

  11. An open source software project for obstetrical procedure scheduling and occupancy analysis.

    PubMed

    Isken, Mark W; Ward, Timothy J; Littig, Steven J

    2011-03-01

    Increases in the rate of births via cesarean section and induced labor have led to challenging scheduling and capacity planning problems for hospital inpatient obstetrical units. We present occupancy and patient scheduling models to help address these challenges. These patient flow models can be used to explore the relationship between procedure scheduling practices and the resulting occupancy on inpatient obstetrical units such as labor and delivery and postpartum. The models capture numerous important characteristics of inpatient obstetrical patient flow such as time of day and day of week dependent arrivals and length of stay, multiple patient types and clinical interventions, and multiple patient care units with inter-unit patient transfers. We have used these models in several projects at different hospitals involving design of procedure scheduling templates and analysis of inpatient obstetrical capacity. In the development of these models, we made heavy use of open source software tools and have released the entire project as a free and open source model and software toolkit.

  12. Control of research oriented software development

    SciTech Connect

    Lewis, L.C.; Dronkers, J.J.; Pitsker, B.

    1985-12-01

    The Nuclear Waste Policy Act of 1982 directs the Department of Energy (DOE) to dispose permanently high level radioactive waste and civilian spent nuclear fuel by January 31, 1998. DOE has responded by creating an organizational structure that directs all the activities necessary to carry out the legislative demands. LLNL is conducting research in the earth sciences and is developing some unique computer codes to help establish the feasibility of geologic repositories for nuclear waste. LLNL has several codes under development. This paper examines the administrative and organizational measures that were and still are being undertaken in order to control the development of the two major codes. In the case of one code, the software quality assurance requirements were imposed five years after the code began its development. This required a retroactive application of requirements. The other code is still in the conceptual stages of development and here requirements can be applied as soon as the initial code design begins. Both codes are being developed by scientists, not computer programmers, and both are modeling codes, not data acquisition and reduction codes. Also the projects for which these codes are being developed have slightly different software quality assurance requirements. All these factors contribute unique difficulties in attempts to assure that the development not only results in a reliable prediction, but that whatever the reliability, it can be objectively shown to exist. The paper will examine a software management model. It will also discuss the reasons why it is felt that this particular model would stand a reasonable chance for success. The paper will then describe the way in which the model should be integrated into the existing management configuration and tradition.

  13. OpenCFU, a new free and open-source software to count cell colonies and other circular objects.

    PubMed

    Geissmann, Quentin

    2013-01-01

    Counting circular objects such as cell colonies is an important source of information for biologists. Although this task is often time-consuming and subjective, it is still predominantly performed manually. The aim of the present work is to provide a new tool to enumerate circular objects from digital pictures and video streams. Here, I demonstrate that the created program, OpenCFU, is very robust, accurate and fast. In addition, it provides control over the processing parameters and is implemented in an intuitive and modern interface. OpenCFU is a cross-platform and open-source software freely available at http://opencfu.sourceforge.net.

  14. A Flexible Method for Producing F.E.M. Analysis of Bone Using Open-Source Software

    NASA Technical Reports Server (NTRS)

    Boppana, Abhishektha; Sefcik, Ryan; Meyers, Jerry G.; Lewandowski, Beth E.

    2016-01-01

    This project, performed in support of the NASA GRC Space Academy summer program, sought to develop an open-source workflow methodology that segmented medical image data, created a 3D model from the segmented data, and prepared the model for finite-element analysis. In an initial step, a technological survey evaluated the performance of various existing open-source software that claim to perform these tasks. However, the survey concluded that no single software exhibited the wide array of functionality required for the potential NASA application in the area of bone, muscle and bio fluidic studies. As a result, development of a series of Python scripts provided the bridging mechanism to address the shortcomings of the available open source tools. The implementation of the VTK library provided the most quick and effective means of segmenting regions of interest from the medical images; it allowed for the export of a 3D model by using the marching cubes algorithm to build a surface mesh. To facilitate the development of the model domain from this extracted information required a surface mesh to be processed in the open-source software packages Blender and Gmsh. The Preview program of the FEBio suite proved to be sufficient for volume filling the model with an unstructured mesh and preparing boundaries specifications for finite element analysis. To fully allow FEM modeling, an in house developed Python script allowed assignment of material properties on an element by element basis by performing a weighted interpolation of voxel intensity of the parent medical image correlated to published information of image intensity to material properties, such as ash density. A graphical user interface combined the Python scripts and other software into a user friendly interface. The work using Python scripts provides a potential alternative to expensive commercial software and inadequate, limited open-source freeware programs for the creation of 3D computational models. More work

  15. Computer-Aided Software Engineering - An approach to real-time software development

    NASA Technical Reports Server (NTRS)

    Walker, Carrie K.; Turkovich, John J.

    1989-01-01

    A new software engineering discipline is Computer-Aided Software Engineering (CASE), a technology aimed at automating the software development process. This paper explores the development of CASE technology, particularly in the area of real-time/scientific/engineering software, and a history of CASE is given. The proposed software development environment for the Advanced Launch System (ALS CASE) is described as an example of an advanced software development system for real-time/scientific/engineering (RT/SE) software. The Automated Programming Subsystem of ALS CASE automatically generates executable code and corresponding documentation from a suitably formatted specification of the software requirements. Software requirements are interactively specified in the form of engineering block diagrams. Several demonstrations of the Automated Programming Subsystem are discussed.

  16. Application of Open Source Software by the Lunar Mapping and Modeling Project

    NASA Astrophysics Data System (ADS)

    Ramirez, P.; Goodale, C. E.; Bui, B.; Chang, G.; Kim, R. M.; Law, E.; Malhotra, S.; Rodriguez, L.; Sadaqathullah, S.; Mattmann, C. A.; Crichton, D. J.

    2011-12-01

    The Lunar Mapping and Modeling Project (LMMP), led by the Marshall Space Flight center (MSFC), is responsible for the development of an information system to support lunar exploration, decision analysis, and release of lunar data to the public. The data available through the lunar portal is predominantly derived from present lunar missions (e.g., the Lunar Reconnaissance Orbiter (LRO)) and from historical missions (e.g., Apollo). This project has created a gold source of data, models, and tools for lunar explorers to exercise and incorporate into their activities. At Jet Propulsion Laboratory (JPL), we focused on engineering and building the infrastructure to support cataloging, archiving, accessing, and delivery of lunar data. We decided to use a RESTful service-oriented architecture to enable us to abstract from the underlying technology choices and focus on interfaces to be used internally and externally. This decision allowed us to leverage several open source software components and integrate them by either writing a thin REST service layer or relying on the API they provided; the approach chosen was dependent on the targeted consumer of a given interface. We will discuss our varying experience using open source products; namely Apache OODT, Oracle Berkley DB XML, Apache Solr, and Oracle OpenSSO (now named OpenAM). Apache OODT, developed at NASA's Jet Propulsion Laboratory and recently migrated over to Apache, provided the means for ingestion and cataloguing of products within the infrastructure. Its usage was based upon team experience with the project and past benefit received on other projects internal and external to JPL. Berkeley DB XML, distributed by Oracle for both commercial and open source use, was the storage technology chosen for our metadata. This decision was in part based on our use Federal Geographic Data Committee (FGDC) Metadata, which is expressed in XML, and the desire to keep it in its native form and exploit other technologies built on

  17. Experiences using OpenMP based on Computer Directed Software DSM on a PC Cluster

    NASA Technical Reports Server (NTRS)

    Hess, Matthias; Jost, Gabriele; Mueller, Matthias; Ruehle, Roland

    2003-01-01

    In this work we report on our experiences running OpenMP programs on a commodity cluster of PCs running a software distributed shared memory (DSM) system. We describe our test environment and report on the performance of a subset of the NAS Parallel Benchmarks that have been automaticaly parallelized for OpenMP. We compare the performance of the OpenMP implementations with that of their message passing counterparts and discuss performance differences.

  18. Experiences Using OpenMP Based on Compiler Directed Software DSM on a PC Cluster

    NASA Technical Reports Server (NTRS)

    Hess, Matthias; Jost, Gabriele; Mueller, Matthias; Ruehle, Roland; Biegel, Bryan (Technical Monitor)

    2002-01-01

    In this work we report on our experiences running OpenMP (message passing) programs on a commodity cluster of PCs (personal computers) running a software distributed shared memory (DSM) system. We describe our test environment and report on the performance of a subset of the NAS (NASA Advanced Supercomputing) Parallel Benchmarks that have been automatically parallelized for OpenMP. We compare the performance of the OpenMP implementations with that of their message passing counterparts and discuss performance differences.

  19. Software Development Plan for DESCARTES and CIDER

    SciTech Connect

    Eslinger, P.W.

    1992-12-08

    This Software Development Plan (SDP) outlines all software activities required to obtain functional environmental accumulation and individual dose codes for the Hanford Environmental Dose Reconstruction (HEDR) project. The modeling activities addressed use the output of the air transport-code HATCHET to compute radionuclide concentrations in environmental pathways, and continue on through calculations of dose for individuals. The Hanford Environmental Dose Reconstruction (HEDR) Project has a deliverable in the June 1993 time frame to be able to start computing doses to individuals from nuclear-related activities on the Hanford Site during and following World War II. The CIDER code will compute doses and their uncertainties for individuals living in the contaminated environment computed by DESCARTES. The projected size of the code is 3000 lines.

  20. Investigation of a corrugated channel flow with an open source PIV software

    NASA Astrophysics Data System (ADS)

    Sivas, Deniz; Bahadır Olcay, A.; Ahn, Hojin

    2016-03-01

    In this study, the corrugated channel flow was investigated by using an open-source particle image velocimetry (PIV) software. The open-source software called OpenPIV was first verified by using images of an earlier experimental work of a vortex ring formation. The corrugated channel flow images were taken with 200 W power LED light source and a high speed camera and those images were analysed with these spatial and temporal tools of OpenPIV. Laminar, transient and turbulent flow regimes were identified when Reynolds number was below 1100, in between 1100 and 2000 and higher than 2000, respectively. The velocity vectors were found to be about 20% lower than the previous study results. The flow inside the grooves was also investigated with OpenPIV and flow characteristics at the grooves were captured when interrogation window size was lowered. The visualization of the flow was presented for different Reynolds numbers with the relative scale values. As a result of this study, OpenPIV software was determined as promising open source PIV analysis software.

  1. Global Software Development Patterns for Project Management

    NASA Astrophysics Data System (ADS)

    Välimäki, Antti; Kääriäinen, Jukka; Koskimies, Kai

    Global software development with the agile or waterfall development process has been taken into use in many companies. GSD offers benefits but also new challenges without known, documented solutions. The goal of this research is to present current best practices for GSD in the form of process patterns for project management, evaluated by using a scenario-based assessment method. The best practices have been collected from a large company operating in process automation. It is expected that the resulting pattern language helps other companies to improve their GSD processes by incorporating the patterns in the processes.

  2. The Effects of Development Team Skill on Software Product Quality

    NASA Technical Reports Server (NTRS)

    Beaver, Justin M.; Schiavone, Guy A.

    2006-01-01

    This paper provides an analysis of the effect of the skill/experience of the software development team on the quality of the final software product. A method for the assessment of software development team skill and experience is proposed, and was derived from a workforce management tool currently in use by the National Aeronautics and Space Administration. Using data from 26 smallscale software development projects, the team skill measures are correlated to 5 software product quality metrics from the ISO/IEC 9126 Software Engineering Product Quality standard. in the analysis of the results, development team skill is found to be a significant factor in the adequacy of the design and implementation. In addition, the results imply that inexperienced software developers are tasked with responsibilities ill-suited to their skill level, and thus have a significant adverse effect on the quality of the software product. Keywords: software quality, development skill, software metrics

  3. Evaluating software development by analysis of changes: The data from the software engineering laboratory

    NASA Technical Reports Server (NTRS)

    1982-01-01

    An effective data collection methodology for evaluating software development methodologies was applied to four different software development projects. Goals of the data collection included characterizing changes and errors, characterizing projects and programmers, identifying effective error detection and correction techniques, and investigating ripple effects. The data collected consisted of changes (including error corrections) made to the software after code was written and baselined, but before testing began. Data collection and validation were concurrent with software development. Changes reported were verified by interviews with programmers.

  4. Distance education course on spatial multi-hazard risk assessment, using Open Source software

    NASA Astrophysics Data System (ADS)

    van Westen, C. J.; Frigerio, S.

    2009-04-01

    As part of the capacity building activities of the United Nations University - ITC School on Disaster Geo-Information Management (UNU-ITC DGIM) the International Institute for Geoinformation Science and Earth Observation (ITC) has developed a distance education course on the application of Geographic Information Systems for multi-hazard risk assessment. This course is designed for academic staff, as well as for professionals working in (non-) governmental organizations where knowledge of disaster risk management is essential. The course guides the participants through the entire process of risk assessment, on the basis of a case study of a city exposed to multiple hazards, in a developing country. The courses consists of eight modules, each with a guide book explaining the theoretical background, and guiding the participants through spatial data requirements for risk assessment, hazard assessment procedures, generation of elements at risk databases, vulnerability assessment, qualitative and quantitative risk assessment methods, risk evaluation and risk reduction. Linked to the theory is a large set of exercises, with exercise descriptions, answer sheets, demos and GIS data. The exercises deal with four different types of hazards: earthquakes, flooding, technological hazards, and landslides. One important consideration in designing the course is that people from developing countries should not be restricted in using it due to financial burdens for software acquisition. Therefore the aim was to use Open Source software as a basis. The GIS exercises are written for the ILWIS software. All exercises have also been integrated into a WebGIS, using the Open source software CartoWeb (based on GNU License). It is modular and customizable thanks to its object-oriented architecture and based on a hierarchical structure (to manage and organize every package of information of every step required in risk assessment). Different switches for every component of the risk assessment

  5. Open source tools for ATR development and performance evaluation

    NASA Astrophysics Data System (ADS)

    Baumann, James M.; Dilsavor, Ronald L.; Stubbles, James; Mossing, John C.

    2002-07-01

    Early in almost every engineering project, a decision must be made about tools; should I buy off-the-shelf tools or should I develop my own. Either choice can involve significant cost and risk. Off-the-shelf tools may be readily available, but they can be expensive to purchase and to maintain licenses, and may not be flexible enough to satisfy all project requirements. On the other hand, developing new tools permits great flexibility, but it can be time- (and budget-) consuming, and the end product still may not work as intended. Open source software has the advantages of both approaches without many of the pitfalls. This paper examines the concept of open source software, including its history, unique culture, and informal yet closely followed conventions. These characteristics influence the quality and quantity of software available, and ultimately its suitability for serious ATR development work. We give an example where Python, an open source scripting language, and OpenEV, a viewing and analysis tool for geospatial data, have been incorporated into ATR performance evaluation projects. While this case highlights the successful use of open source tools, we also offer important insight into risks associated with this approach.

  6. Self-service for software development projects and HPC activities

    NASA Astrophysics Data System (ADS)

    Husejko, M.; Høimyr, N.; Gonzalez, A.; Koloventzos, G.; Asbury, D.; Trzcinska, A.; Agtzidis, I.; Botrel, G.; Otto, J.

    2014-05-01

    This contribution describes how CERN has implemented several essential tools for agile software development processes, ranging from version control (Git) to issue tracking (Jira) and documentation (Wikis). Running such services in a large organisation like CERN requires many administrative actions both by users and service providers, such as creating software projects, managing access rights, users and groups, and performing tool-specific customisation. Dealing with these requests manually would be a time-consuming task. Another area of our CERN computing services that has required dedicated manual support has been clusters for specific user communities with special needs. Our aim is to move all our services to a layered approach, with server infrastructure running on the internal cloud computing infrastructure at CERN. This contribution illustrates how we plan to optimise the management of our of services by means of an end-user facing platform acting as a portal into all the related services for software projects, inspired by popular portals for open-source developments such as Sourceforge, GitHub and others. Furthermore, the contribution will discuss recent activities with tests and evaluations of High Performance Computing (HPC) applications on different hardware and software stacks, and plans to offer a dynamically scalable HPC service at CERN, based on affordable hardware.

  7. Open Architecture Standard for NASA's Software-Defined Space Telecommunications Radio Systems

    NASA Technical Reports Server (NTRS)

    Reinhart, Richard C.; Johnson, Sandra K.; Kacpura, Thomas J.; Hall, Charles S.; Smith, Carl R.; Liebetreu, John

    2008-01-01

    NASA is developing an architecture standard for software-defined radios used in space- and ground-based platforms to enable commonality among radio developments to enhance capability and services while reducing mission and programmatic risk. Transceivers (or transponders) with functionality primarily defined in software (e.g., firmware) have the ability to change their functional behavior through software alone. This radio architecture standard offers value by employing common waveform software interfaces, method of instantiation, operation, and testing among different compliant hardware and software products. These common interfaces within the architecture abstract application software from the underlying hardware to enable technology insertion independently at either the software or hardware layer. This paper presents the initial Space Telecommunications Radio System (STRS) Architecture for NASA missions to provide the desired software abstraction and flexibility while minimizing the resources necessary to support the architecture.

  8. Assesing Ecohydrological Impacts of Forest Disturbance using Open Source Software

    NASA Astrophysics Data System (ADS)

    Lovette, J. P.; Chang, T.; Treglia, M.; Gan, T.; Duncan, J.

    2014-12-01

    In the past 30 years, land management protocols, climate change, and land use have radically changed the frequency and magnitudes of disturbance regimes. Landscape scale disturbances can change a forest structure, resulting in impacts on adjacent watersheds that may affect water amount/quality for human and natural resource use. Our project quantifies hydrologic changes from of a suite of disturbance events resulting in vegetation cover shifts at watersheds across the continental United States. These disturbance events include: wildfire, insect/disease, deforestation(logging), hurricanes, ice storms, and human land use. Our major question is: Can the effects of disturbance on ecohydrology be generalized across regions, time scales, and spatial scales? Using a workflow of open source tools, and utilizing publicly available data, this work could be extended and leveraged by other researchers. Spatial data on disturbance include the MODIS Global Disturbance Index (NTSG), Landsat 7 Global Forest Change (Hansen dataset), and the Degree of Human Modification (Theobald dataset). Ecohydrologic response data includes USGS NWIS, USFS-LTER climDB/hydroDB, and the CUAHSI HIS.

  9. Deciding on Open Innovation: An Exploration of How Firms Create and Capture Value with Open Source Software

    NASA Astrophysics Data System (ADS)

    Morgan, Lorraine; Finnegan, Patrick

    Open innovation is a paradigm that proposes that firms can and should use external as well as internal innovations/ideas. A popular example of open innovation has been open source software (OSS). The key issues facing organizational decision makers considering OSS strategies is, how does the firm create value for the customer while simultaneously extracting value for itself? However, the adoption of OSS as part of an open innovation strategy is a recent phenomenon and many unanswered questions remain. Taking the viewpoint of seven IS/IT decision makers in European firms, this paper reveals how decision makers considered aspects of value creation, capture, and networking in making decisions on adopting open source software. The findings reveal that while decision makers look to open innovation for value creation and capture, there is still a desire to remain self reliant, resulting in collaborative design (of external innovations) rather than collaborative decision making with value network partners in relation to how such innovations would help create and capture value within firms.

  10. Software developments for gamma-ray data with high multiplicity

    SciTech Connect

    Lauritsen, T.; Crowell, B.; Ahmad, I.

    1995-08-01

    Software capabilities for angle sort of data from the new powerful gamma detector arrays like Gammasphere and EUROGAM which were developed in preceding years, were enhanced and extended to read new data formats. In addition, we can now sort the data for directional correlation ratios (DCO). This version of the software was exported to a university group. For the analysis of, e.g., the quasi-continuum of gamma-rays it is necessary to angle sort the high multiplicity data and perform a careful background subtraction in order to extract the continuum of gamma rays from the feeding and decay of superdeformed bands. We need to angle sort in order to untangle the parts of the spectra which are of E1 nature from those of quadrupole or of M1/E2 nature. We further developed software running on new fast SUN workstations. We now have two such workstations, each equipped with a stacker and a secondary 8-mm tape drive. We enhanced the software to apply an energy-dependent time gate. We can enhance the events that are in true prompt coincidence, and reject random and signals in the germanium detectors coming from neutrons hitting the detector in coincidence with the gamma-ray burst. By applying energy-dependent time gates, in form of a {open_quotes}reduced time{close_quotes}, we can perform this rejection without the loss of efficiency at low energy. Effort has gone into developing low-level tape reader routines for data from the new EUROGAM array with cluster detectors as well as from the new flexible data format from Gammasphere phase II. In addition, we developed software to read data tapes from the local DAPHNE and MSU data-acquisition systems on the new fast UNIX platforms.

  11. A Survey of Quality Assurance Practices in Biomedical Open Source Software Projects

    PubMed Central

    Koru, Günes; Neisa, Angelica; Umarji, Medha

    2007-01-01

    Background Open source (OS) software is continuously gaining recognition and use in the biomedical domain, for example, in health informatics and bioinformatics. Objectives Given the mission critical nature of applications in this domain and their potential impact on patient safety, it is important to understand to what degree and how effectively biomedical OS developers perform standard quality assurance (QA) activities such as peer reviews and testing. This would allow the users of biomedical OS software to better understand the quality risks, if any, and the developers to identify process improvement opportunities to produce higher quality software. Methods A survey of developers working on biomedical OS projects was conducted to examine the QA activities that are performed. We took a descriptive approach to summarize the implementation of QA activities and then examined some of the factors that may be related to the implementation of such practices. Results Our descriptive results show that 63% (95% CI, 54-72) of projects did not include peer reviews in their development process, while 82% (95% CI, 75-89) did include testing. Approximately 74% (95% CI, 67-81) of developers did not have a background in computing, 80% (95% CI, 74-87) were paid for their contributions to the project, and 52% (95% CI, 43-60) had PhDs. A multivariate logistic regression model to predict the implementation of peer reviews was not significant (likelihood ratio test = 16.86, 9 df, P = .051) and neither was a model to predict the implementation of testing (likelihood ratio test = 3.34, 9 df, P = .95). Conclusions Less attention is paid to peer review than testing. However, the former is a complementary, and necessary, QA practice rather than an alternative. Therefore, one can argue that there are quality risks, at least at this point in time, in transitioning biomedical OS software into any critical settings that may have operational, financial, or safety implications. Developers of

  12. Quality Assurance in Software Development: An Exploratory Investigation in Software Project Failures and Business Performance

    ERIC Educational Resources Information Center

    Ichu, Emmanuel A.

    2010-01-01

    Software quality is perhaps one of the most sought-after attributes in product development, however; this goal is unattained. Problem factors in software development and how these have affected the maintainability of the delivered software systems requires a thorough investigation. It was, therefore, very important to understand software…

  13. Open software tools for eddy covariance flux partitioning

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Agro-ecosystem management and assessment will benefit greatly from the development of reliable techniques for partitioning evapotranspiration (ET) into evaporation (E) and transpiration (T). Among other activities, flux partitioning can aid in evaluating consumptive vs. non-consumptive agricultural...

  14. Web-based spatial analysis with the ILWIS open source GIS software and satellite images from GEONETCast

    NASA Astrophysics Data System (ADS)

    Lemmens, R.; Maathuis, B.; Mannaerts, C.; Foerster, T.; Schaeffer, B.; Wytzisk, A.

    2009-12-01

    This paper involves easy accessible integrated web-based analysis of satellite images with a plug-in based open source software. The paper is targeted to both users and developers of geospatial software. Guided by a use case scenario, we describe the ILWIS software and its toolbox to access satellite images through the GEONETCast broadcasting system. The last two decades have shown a major shift from stand-alone software systems to networked ones, often client/server applications using distributed geo-(web-)services. This allows organisations to combine without much effort their own data with remotely available data and processing functionality. Key to this integrated spatial data analysis is a low-cost access to data from within a user-friendly and flexible software. Web-based open source software solutions are more often a powerful option for developing countries. The Integrated Land and Water Information System (ILWIS) is a PC-based GIS & Remote Sensing software, comprising a complete package of image processing, spatial analysis and digital mapping and was developed as commercial software from the early nineties onwards. Recent project efforts have migrated ILWIS into a modular, plug-in-based open source software, and provide web-service support for OGC-based web mapping and processing. The core objective of the ILWIS Open source project is to provide a maintainable framework for researchers and software developers to implement training components, scientific toolboxes and (web-) services. The latest plug-ins have been developed for multi-criteria decision making, water resources analysis and spatial statistics analysis. The development of this framework is done since 2007 in the context of 52°North, which is an open initiative that advances the development of cutting edge open source geospatial software, using the GPL license. GEONETCast, as part of the emerging Global Earth Observation System of Systems (GEOSS), puts essential environmental data at the

  15. SPLASSH: Open source software for camera-based high-speed, multispectral in-vivo optical image acquisition.

    PubMed

    Sun, Ryan; Bouchard, Matthew B; Hillman, Elizabeth M C

    2010-08-02

    Camera-based in-vivo optical imaging can provide detailed images of living tissue that reveal structure, function, and disease. High-speed, high resolution imaging can reveal dynamic events such as changes in blood flow and responses to stimulation. Despite these benefits, commercially available scientific cameras rarely include software that is suitable for in-vivo imaging applications, making this highly versatile form of optical imaging challenging and time-consuming to implement. To address this issue, we have developed a novel, open-source software package to control high-speed, multispectral optical imaging systems. The software integrates a number of modular functions through a custom graphical user interface (GUI) and provides extensive control over a wide range of inexpensive IEEE 1394 Firewire cameras. Multispectral illumination can be incorporated through the use of off-the-shelf light emitting diodes which the software synchronizes to image acquisition via a programmed microcontroller, allowing arbitrary high-speed illumination sequences. The complete software suite is available for free download. Here we describe the software's framework and provide details to guide users with development of this and similar software.

  16. Optimizing the use of open-source software applications in drug discovery.

    PubMed

    Geldenhuys, Werner J; Gaasch, Kevin E; Watson, Mark; Allen, David D; Van der Schyf, Cornelis J

    2006-02-01

    Drug discovery is a time consuming and costly process. Recently, a trend towards the use of in silico computational chemistry and molecular modeling for computer-aided drug design has gained significant momentum. This review investigates the application of free and/or open-source software in the drug discovery process. Among the reviewed software programs are applications programmed in JAVA, Perl and Python, as well as resources including software libraries. These programs might be useful for cheminformatics approaches to drug discovery, including QSAR studies, energy minimization and docking studies in drug design endeavors. Furthermore, this review explores options for integrating available computer modeling open-source software applications in drug discovery programs.

  17. Barriers to open source software adoption in Quebec's health care organizations.

    PubMed

    Paré, Guy; Wybo, Michael D; Delannoy, Charles

    2009-02-01

    We conducted in-depth interviews with 15 CIOs to identify the principal impediments to adoption of open source software in the Quebec health sector. We found that key factors for not adopting an open source solution were closely linked to the orientations of ministry level policy makers and a seeming lack of information on the part of operational level IT managers concerning commercially oriented open source providers. We use the case of recent changes in the structure of Quebec's health care organizations and a change in the commercial policies of a key vendor to illustrate our conclusions regarding barriers to adoption of open source products.

  18. Karyotyping human and mouse cells using probes from single-sorted chromosomes and open source software.

    PubMed

    Potapova, Tamara A; Unruh, Jay R; Box, Andrew C; Bradford, William D; Seidel, Christopher W; Slaughter, Brian D; Sivagnanam, Shamilene; Wu, Yuping; Li, Rong

    2015-12-01

    Multispectral karyotyping analyzes all chromosomes in a single cell by labeling them with chromosome-specific probes conjugated to unique combinations of fluorophores. Currently available multispectral karyotyping systems require the purchase of specialized equipment and reagents. However, conventional laser scanning confocal microscopes that are capable of separating multiple overlapping emission spectra through spectral imaging and linear unmixing can be utilized for classifying chromosomes painted with multicolor probes. Here, we generated multicolor chromosome paints from single-sorted human and mouse chromosomes and developed the Karyotype Identification via Spectral Separation (KISS) analysis package, a set of freely available open source ImageJ tools for spectral unmixing and karyotyping. Chromosome spreads painted with our multispectral probe sets can be imaged on widely available spectral laser scanning confocal microscopes and analyzed using our ImageJ tools. Together, our probes and software enable academic labs with access to a laser-scanning spectral microscope to perform multicolor karyotyping in a cost-effective manner.

  19. Comparative analysis of colorimetric staining in skin using open-source software

    PubMed Central

    Billings, Paul C; Sanzari, Jenine K.; Kennedy, Ann R.; Cengel, Keith A.; Seykora, John T.

    2015-01-01

    Colorimetric staining techniques such as immunohistochemistry (IHC), immunofluorescence (IF) and histochemistry (HC) provide useful information regarding the localization and relative amount of a molecule/substance in skin. We have developed a novel, straightforward method to assess colorimetric staining by combining features from two open-source software programs. As a proof of principle, we demonstrate the utility of this approach by analyzing changes in skin melanin deposition during the radiation-induced tanning response of Yucatan mini-pigs. This method includes a visualization step to validate the accuracy of color selection before quantitation to ensure accuracy. The data show that this method is robust and will provide a means to obtain accurate comparative analyses of staining in IHC/IF/HC samples. PMID:25393687

  20. Understanding the Role of Licenses and Evolution in Open Architecture Software Ecosystems

    DTIC Science & Technology

    2010-11-29

    Understanding the Role of Licenses and Evolution in Open Architecture Software Ecosystems Walt Scacchi Institute for Software Research. University of... Scacchi ), alspaugh@cs. georgetown.edu (Thomas A. Alspaugh) Preprint submitted to Elsevier November 29, 2010 Manuscript Click here to view linked References...2001-2002. 14. The Mono C# Compiler and Tools, Copyright 2005-2008 Novell, Inc. 15. libcurl. Copyright (c) 1996-2008, Daniel Stenberg < daniel @haxx.se

  1. A Comparison of Learning Technologies for Teaching Spacecraft Software Development

    ERIC Educational Resources Information Center

    Straub, Jeremy

    2014-01-01

    The development of software for spacecraft represents a particular challenge and is, in many ways, a worst case scenario from a design perspective. Spacecraft software must be "bulletproof" and operate for extended periods of time without user intervention. If the software fails, it cannot be manually serviced. Software failure may…

  2. A beamline matching application based on open source software

    SciTech Connect

    2000-12-21

    An interactive Beamline Matching application has been developed using beamline and automatic differentiation class libraries. Various freely available components were used; in particular, the user interface is based on FLTK, a C++ toolkit distributed under the terms of the GNU Public License (GPL). The result is an application that compiles without modifications under both X-Windows and Win32 and offers the same look and feel under both operating environments. In this paper, we discuss some of the practical issues that were confronted and the choices that were made. In particular, we discuss object-based event propagation mechanisms, multithreading, language mixing and persistence.

  3. Assessing the proficiency of software developers

    NASA Technical Reports Server (NTRS)

    Putnam, L. H.; Putnam, D. T.; Thayer, L. P.

    1984-01-01

    The trend lines presented can be useful in a number of ways. They provide a baseline of comparision from which software developers can compare their performance against a large database of similar projects. This will often identify a organizational style. It was possible to quantify the organizational style using the Manpower Buildup Gradient. That the developer was a better than average producer on RAM based systems was shown. The Ck associated with the ROM system suggests that it is a different class of work. When this system is compared against the Firmware database it is very creditable. It is important to recognize that there are non linearities present in the software process. The non linearities are tied to system size. For comparative purposes one must always make judgements based on similar sizes. In the past the tendency has been to calculate a few ratios on several projects and then compare them without any regard to amount of functionality that was created. This practice can be very misleading and dangerous. The method described, used in a thoughtful analytic manner, can be very helpful.

  4. Rapid Application Development with OpenStudio: Preprint

    SciTech Connect

    Weaver, E.; Long, N.; Fleming, K.; Schott, M.; Benne, K.; Hale, E.

    2012-05-01

    This paper presents several case studies of rapidly implemented, audience-specific applications for whole building energy modeling and standards analysis. By tailoring each application to the audience and the task at hand, the required learning curve for new users was greatly reduced. Each case study used OpenStudio, the U.S. Department of Energy's middleware software development kit (SDK). OpenStudio provides an easy interface to the EnergyPlus whole building simulation engine, while extending its capability and providing higher-level functionality such as software interoperability, standards, analysis, and optimization. Each case study is unique in the technology employed to interface with OpenStudio as well as the methods used for user interaction and data presentation. Four case studies are presented.

  5. Software open system for MPEG video and audio transmission

    NASA Astrophysics Data System (ADS)

    Cabitza, Gabriella; Setzu, Maria G.; Fregonese, Giulio

    1998-02-01

    This paper describes some experience we have done in the development of multimedia application inside a distributed architecture. The requirements of such environment are the following: (1) to support high quality multimedia data; (2) to be independent from the hardware platform and from the transport protocol; (3) to be cheap form the client side. The goals to reach were twofold: to develop a client/server system for the management and transmission of MPEG bitstreams, and to optimize the transmission of MPEG over ATM networks. The first goal was reached using standardized technologies in the implementation of the system components: a DSM-CC server has been realized based on CORBA Services, which is able to manage MPEG streams as specified in the ISO DSM-CC document. The client module has been realized using Java. The system, originally written for Sun Solaris has been successfully tested on different Unix and NT platform. The evaluation of quality and performance of the transmission of MPEG over ATM was made using three types of signaling: classical IP over ATM,, LAN emulation and the ATM Native algorithm implemented over FORE API. Both classical IP over ATM and LAN Emulation allows the transparent use of ATM for application written using the widespread TCP/IP family of protocols, but they introduce an overload of data which could not be suitable for real-time transmission. Of course, native ATM gets better performance than Classical IP over ATM and LAN Emulation but binds the application to run only on ATM networks, and at the moment it is hardware dependent.

  6. The development and technology transfer of software engineering technology at NASA. Johnson Space Center

    NASA Technical Reports Server (NTRS)

    Pitman, C. L.; Erb, D. M.; Izygon, M. E.; Fridge, E. M., III; Roush, G. B.; Braley, D. M.; Savely, R. T.

    1992-01-01

    The United State's big space projects of the next decades, such as Space Station and the Human Exploration Initiative, will need the development of many millions of lines of mission critical software. NASA-Johnson (JSC) is identifying and developing some of the Computer Aided Software Engineering (CASE) technology that NASA will need to build these future software systems. The goal is to improve the quality and the productivity of large software development projects. New trends are outlined in CASE technology and how the Software Technology Branch (STB) at JSC is endeavoring to provide some of these CASE solutions for NASA is described. Key software technology components include knowledge-based systems, software reusability, user interface technology, reengineering environments, management systems for the software development process, software cost models, repository technology, and open, integrated CASE environment frameworks. The paper presents the status and long-term expectations for CASE products. The STB's Reengineering Application Project (REAP), Advanced Software Development Workstation (ASDW) project, and software development cost model (COSTMODL) project are then discussed. Some of the general difficulties of technology transfer are introduced, and a process developed by STB for CASE technology insertion is described.

  7. Open science: Investigating precipitation cycles in dynamically downscaled data using openly available radar data and open source software

    NASA Astrophysics Data System (ADS)

    Collis, Scott; helmus, Jonathan; Kotamarthi, Rao; Wang, Jiali; Feng, Yan; Ghate, Virendra

    2016-04-01

    In order to assess infrastructure resilience to climate change in urban centers, climate model output is needed at spatial resolutions required for urban planning. This is most commonly achieved using either empirical or dynamic downscaling at present. The utility of these downscaling methods for assessments depends on having estimates of biases in the models estimate climate variables and their extremes, surface temperature and precipitation as an example, developed using historical data sets. Since precipitation is a multi-scale stochastic process direct comparison with observations is challenging and even modern data sets work at scales too coarse to capture extreme events. Gauge data requires a direct hit by a storm to see the highest rain rates, often leading to an underestimation in the 1-100 year rainfall. This is exacerbated by phenomena such as training that can cause very high gradients in accumulation. This presentation details a long-term (multi-year) study of precipitation derived from open data from the NOAA Next-Generation Radar (NEXRAD) network. Two locations are studied; Portland, Maine, location for a pilot study conducted by the US Department of Homeland Security's on regional resilience to climate change and the Southern Great Plains of Oklahoma, home to the Department of Energy's ARM program. Both are located within 40km of a NEXRAD radar allowing retrievals of rainfall rates on the order of one kilometer using the Python-ARM Radar Toolkit (Py-ART). Both the diurnal and season cycle of precipitation is studied and compared to WRF dynamically downscaled precipitation rates. This project makes heavy use of open source community tools such as project Jupyter and the Scientific Python ecosystem to manage and process 10's of TB of data on midrange cluster infrastructure. Both the meteorological aspects and the data infrastructure and architecture will be discussed.

  8. Free and Open Source Software underpinning the European Forest Data Centre

    NASA Astrophysics Data System (ADS)

    Rodriguez Aseretto, Dario; Di Leo, Margherita; de Rigo, Daniele; Corti, Paolo; McInerney, Daniel; Camia, Andrea; San-Miguel-Ayanz, Jesús

    2013-04-01

    Worldwide, governments are growingly focusing [1] on free and open source software (FOSS) as a move toward transparency and the freedom to run, copy, study, change and improve the software [2]. The European Commission (EC) is also supporting the development of FOSS (see e.g., [3]). In addition to the financial savings, FOSS contributes to scientific knowledge freedom in computational science (CS) [4] and is increasingly rewarded in the science-policy interface within the emerging paradigm of open science [5-8]. Since complex computational science applications may be affected by software uncertainty [4,9-11], FOSS may help to mitigate part of the impact of software errors by CS community-driven open review, correction and evolution of scientific code [10,12-15]. The continental scale of EC science-based policy support implies wide networks of scientific collaboration. Thematic information systems also may benefit from this approach within reproducible [16] integrated modelling [4]. This is supported by the EC strategy on FOSS: "for the development of new information systems, where deployment is foreseen by parties outside of the EC infrastructure, [F]OSS will be the preferred choice and in any case used whenever possible" [17]. The aim of this contribution is to highlight how a continental scale information system may exploit and integrate FOSS technologies within the transdisciplinary research underpinning such a complex system. A European example is discussed where FOSS innervates both the structure of the information system itself and the inherent transdisciplinary research for modelling the data and information which constitute the system content. The information system. The European Forest Data Centre (EFDAC, http://forest.jrc.ec.europa.eu/efdac/) has been established at the EC Joint Research Centre (JRC) as the focal point for forest data and information in Europe to supply European decision-makers with processed, quality checked and timely policy relevant

  9. CACTI: Free, Open-Source Software for the Sequential Coding of Behavioral Interactions

    PubMed Central

    Glynn, Lisa H.; Hallgren, Kevin A.; Houck, Jon M.; Moyers, Theresa B.

    2012-01-01

    The sequential analysis of client and clinician speech in psychotherapy sessions can help to identify and characterize potential mechanisms of treatment and behavior change. Previous studies required coding systems that were time-consuming, expensive, and error-prone. Existing software can be expensive and inflexible, and furthermore, no single package allows for pre-parsing, sequential coding, and assignment of global ratings. We developed a free, open-source, and adaptable program to meet these needs: The CASAA Application for Coding Treatment Interactions (CACTI). Without transcripts, CACTI facilitates the real-time sequential coding of behavioral interactions using WAV-format audio files. Most elements of the interface are user-modifiable through a simple XML file, and can be further adapted using Java through the terms of the GNU Public License. Coding with this software yields interrater reliabilities comparable to previous methods, but at greatly reduced time and expense. CACTI is a flexible research tool that can simplify psychotherapy process research, and has the potential to contribute to the improvement of treatment content and delivery. PMID:22815713

  10. CACTI: free, open-source software for the sequential coding of behavioral interactions.

    PubMed

    Glynn, Lisa H; Hallgren, Kevin A; Houck, Jon M; Moyers, Theresa B

    2012-01-01

    The sequential analysis of client and clinician speech in psychotherapy sessions can help to identify and characterize potential mechanisms of treatment and behavior change. Previous studies required coding systems that were time-consuming, expensive, and error-prone. Existing software can be expensive and inflexible, and furthermore, no single package allows for pre-parsing, sequential coding, and assignment of global ratings. We developed a free, open-source, and adaptable program to meet these needs: The CASAA Application for Coding Treatment Interactions (CACTI). Without transcripts, CACTI facilitates the real-time sequential coding of behavioral interactions using WAV-format audio files. Most elements of the interface are user-modifiable through a simple XML file, and can be further adapted using Java through the terms of the GNU Public License. Coding with this software yields interrater reliabilities comparable to previous methods, but at greatly reduced time and expense. CACTI is a flexible research tool that can simplify psychotherapy process research, and has the potential to contribute to the improvement of treatment content and delivery.

  11. EarthEd Online: Open Source Online Software to Support Large Courses

    NASA Astrophysics Data System (ADS)

    Prothero, W. A.

    2003-12-01

    The purpose of the EarthEd Online software project is to support a modern instructional pedagogy in a large, college level, earth science course. It is an ongoing development project that has evolved in a large general education oceanography course over the last decade. Primary goals for the oceanography course are to support learners in acquiring a knowledge of science process, an appreciation for the relevance of science to society, and basic content knowledge. In order to support these goals, EarthEd incorporates: a) integrated access to various kinds of real earth data (and links to web-based data browsers), b) online discussions, live chat, with integrated graphics editing, linking, and upload, c) online writing, reviewing, and grading, d) online homework assignments, e) on demand grade calculation, and f) instructor grade entry and progress reports. The software was created using Macromedia Director. It is distributed to students on a CDROM and updates are downloaded and installed automatically. Data browsers for plate tectonics relevant data ("Our Dynamic Planet"), a virtual exploration of the East Pacific Rise, the World Ocean Atlas-98, and a fishing simulation game are integrated with the EarthEd software. The system is modular which allows new capabilities, such as new data browsers, to be added. Student reactions to the software are positive overall. They are especially appreciative of the on demand grade computation capability. The online writing, commenting and grading is particularly effective in managing the large number of papers that get submitted. The TA's grade the papers, but the instructor can provide feedback to them as they grade the papers, and a record is maintained of all comments and rubric item grades. Commenting is made easy by simply "dragging" a selection of pre-defined comments into the student's text. Scoring is supported by an integrated scoring rubric. All assignments, rubrics, etc. are configured in text files that are downloaded

  12. Software development for Laser Engineered Net Shaping

    SciTech Connect

    Ensz, M.T.; Griffith, M.L.; Harwell, L.D.

    1998-08-01

    Laser Engineered Net Shaping, also known as LENS{trademark}, is an advanced manufacturing technique used to fabricate near-net shaped, fully dense metal components directly from computer solid models without the use of traditional machining processes. The LENS{trademark} process uses a high powered laser to create a molten pool into which powdered metal is injected and solidified. Like many SFF techniques, LENS{trademark} parts are made through a layer additive process. In the current system, for any given layer, the laser is held stationary, while the part and its associated substrate is moved, allowing for the each layer`s geometry to be formed. Individual layers are generated by tracing out the desired border, followed by filling in the remaining volume. Recent research into LENS{trademark} has highlighted the sensitivity of the processes to multiple software controllable parameters such as substrate travel velocity, border representation, and fill patterns. This research is aimed at determining optimal border outlines and fill patterns for LENS{trademark} and at developing the associated software necessary for automating the creation of the desired motion control.

  13. Open Source Software Openfoam as a New Aerodynamical Simulation Tool for Rocket-Borne Measurements

    NASA Astrophysics Data System (ADS)

    Staszak, T.; Brede, M.; Strelnikov, B.

    2015-09-01

    The only way to do in-situ measurements, which are very important experimental studies for atmospheric science, in the mesoshere/lower thermosphere (MLT) is to use sounding rockets. The drawback of using rockets is the shock wave appearing because of the very high speed of the rocket motion (typically about 1000 mIs). This shock wave disturbs the density, the temperature and the velocity fields in the vicinity of the rocket, compared to undisturbed values of the atmosphere. This effect, however, can be quantified and the measured data has to be corrected not just to make it more precise but simply usable. The commonly accepted and widely used tool for this calculations is the Direct Simulation Monte Carlo (DSMC) technique developed by GA. Bird which is available as stand-alone program limited to use a single processor. Apart from complications with simulations of flows around bodies related to different flow regimes in the altitude range of MLT, that rise due to exponential density change by several orders of magnitude, a particular hardware configuration introduces significant difficulty for aerodynamical calculations due to choice of the grid sizes mainly depending on the demands on adequate DSMCs and good resolution of geometries with scale differences of factor of iO~. This makes either the calculation time unreasonably long or even prevents the calculation algorithm from converging. In this paper we apply the free open source software OpenFOAM (licensed under GNU GPL) for a three-dimensional CFD-Simulation of a flow around a sounding rocket instrumentation. An advantage of this software package, among other things, is that it can run on high performance clusters, which are easily scalable. We present the first results and discuss the potential of the new tool in applications for sounding rockets.

  14. Firing Room Remote Application Software Development & Swamp Works Laboratory Robot Software Development

    NASA Technical Reports Server (NTRS)

    Garcia, Janette

    2016-01-01

    The National Aeronautics and Space Administration (NASA) is creating a way to send humans beyond low Earth orbit, and later to Mars. Kennedy Space Center (KSC) is working to make this possible by developing a Spaceport Command and Control System (SCCS) which will allow the launch of Space Launch System (SLS). This paper's focus is on the work performed by the author in her first and second part of the internship as a remote application software developer. During the first part of her internship, the author worked on the SCCS's software application layer by assisting multiple ground subsystems teams including Launch Accessories (LACC) and Environmental Control System (ECS) on the design, development, integration, and testing of remote control software applications. Then, on the second part of the internship, the author worked on the development of robot software at the Swamp Works Laboratory which is a research and technology development group which focuses on inventing new technology to help future In-Situ Resource Utilization (ISRU) missions.

  15. Prometheus Reactor I&C Software Development Methodology, for Action

    SciTech Connect

    T. Hamilton

    2005-07-30

    The purpose of this letter is to submit the Reactor Instrumentation and Control (I&C) software life cycle, development methodology, and programming language selections and rationale for project Prometheus to NR for approval. This letter also provides the draft Reactor I&C Software Development Process Manual and Reactor Module Software Development Plan to NR for information.

  16. R-CMap-An open-source software for concept mapping.

    PubMed

    Bar, Haim; Mentch, Lucas

    2017-02-01

    Planning and evaluating projects often involves input from many stakeholders. Fusing and organizing many different ideas, opinions, and interpretations into a coherent and acceptable plan or project evaluation is challenging. This is especially true when seeking contributions from a large number of participants, especially when not all can participate in group discussions, or when some prefer to contribute their perspectives anonymously. One of the major breakthroughs in the area of evaluation and program planning has been the use of graphical tools to represent the brainstorming process. This provides a quantitative framework for organizing ideas and general concepts into simple-to-interpret graphs. We developed a new, open-source concept mapping software called R-CMap, which is implemented in R. This software provides a graphical user interface to guide users through the analytical process of concept mapping. The R-CMap software allows users to generate a variety of plots, including cluster maps, point rating and cluster rating maps, as well as pattern matching and go-zone plots. Additionally, R-CMap is capable of generating detailed reports that contain useful statistical summaries of the data. The plots and reports can be embedded in Microsoft Office tools such as Word and PowerPoint, where users may manually adjust various plot and table features to achieve the best visual results in their presentations and official reports. The graphical user interface of R-CMap allows users to define cluster names, change the number of clusters, select rating variables for relevant plots, and importantly, select subsets of respondents by demographic criteria. The latter is particularly useful to project managers in order to identify different patterns of preferences by subpopulations. R-CMap is user-friendly, and does not require any programming experience. However, proficient R users can add to its functionality by directly accessing built-in functions in R and sharing new

  17. OxMaR: open source free software for online minimization and randomization for clinical trials.

    PubMed

    O'Callaghan, Christopher A

    2014-01-01

    Minimization is a valuable method for allocating participants between the control and experimental arms of clinical studies. The use of minimization reduces differences that might arise by chance between the study arms in the distribution of patient characteristics such as gender, ethnicity and age. However, unlike randomization, minimization requires real time assessment of each new participant with respect to the preceding distribution of relevant participant characteristics within the different arms of the study. For multi-site studies, this necessitates centralized computational analysis that is shared between all study locations. Unfortunately, there is no suitable freely available open source or free software that can be used for this purpose. OxMaR was developed to enable researchers in any location to use minimization for patient allocation and to access the minimization algorithm using any device that can connect to the internet such as a desktop computer, tablet or mobile phone. The software is complete in itself and requires no special packages or libraries to be installed. It is simple to set up and run over the internet using online facilities which are very low cost or even free to the user. Importantly, it provides real time information on allocation to the study lead or administrator and generates real time distributed backups with each allocation. OxMaR can readily be modified and customised and can also be used for standard randomization. It has been extensively tested and has been used successfully in a low budget multi-centre study. Hitherto, the logistical difficulties involved in minimization have precluded its use in many small studies and this software should allow more widespread use of minimization which should lead to studies with better matched control and experimental arms. OxMaR should be particularly valuable in low resource settings.

  18. Management Guidelines for Database Developers' Teams in Software Development Projects

    NASA Astrophysics Data System (ADS)

    Rusu, Lazar; Lin, Yifeng; Hodosi, Georg

    Worldwide job market for database developers (DBDs) is continually increasing in last several years. In some companies, DBDs are organized as a special team (DBDs team) to support other projects and roles. As a new role, the DBDs team is facing a major problem that there are not any management guidelines for them. The team manager does not know which kinds of tasks should be assigned to this team and what practices should be used during DBDs work. Therefore in this paper we have developed a set of management guidelines, which includes 8 fundamental tasks and 17 practices from software development process, by using two methodologies Capability Maturity Model (CMM) and agile software development in particular Scrum in order to improve the DBDs team work. Moreover the management guidelines developed here has been complemented with practices from authors' experience in this area and has been evaluated in the case of a software company. The management guidelines for DBD teams presented in this paper could be very usefully for other companies too that are using a DBDs team and could contribute towards an increase of the efficiency of these teams in their work on software development projects.

  19. Recent software developments for biomechanical assessment

    NASA Astrophysics Data System (ADS)

    Greaves, John O. B.

    1990-08-01

    While much of the software developed in research laboratories is narrow in focus and suited for a specific experiment, some of it is broad enough and of high enough quality to be useful to others in solving similar problems. Several biomechanical assessment packages are now beginning to emerge, including: * 3D research biomechanics (5- and 6-DOF) with kinematics, kinetics, 32-channel analog data subsystem, and project management. * 3D full-body gait analysis with kinematics, kinetics, EMG charts, and force plate charts. * 2D dynamic rear-foot assessment. * 2D occupational biomechanics lifting task and personnel assessments. * 2D dynamic gait analysis. * Multiple 2D dynamic spine assessments. * 2D sport and biomechanics assessments with kinematics and kinetics. * 2D and 3D equine gait assessments.

  20. JHelioviewer: Open-Source Software for Discovery and Image Access in the Petabyte Age (Invited)

    NASA Astrophysics Data System (ADS)

    Mueller, D.; Dimitoglou, G.; Langenberg, M.; Pagel, S.; Dau, A.; Nuhn, M.; Garcia Ortiz, J. P.; Dietert, H.; Schmidt, L.; Hughitt, V. K.; Ireland, J.; Fleck, B.

    2010-12-01

    The unprecedented torrent of data returned by the Solar Dynamics Observatory is both a blessing and a barrier: a blessing for making available data with significantly higher spatial and temporal resolution, but a barrier for scientists to access, browse and analyze them. With such staggering data volume, the data is bound to be accessible only from a few repositories and users will have to deal with data sets effectively immobile and practically difficult to download. From a scientist's perspective this poses three challenges: accessing, browsing and finding interesting data while avoiding the proverbial search for a needle in a haystack. To address these challenges, we have developed JHelioviewer, an open-source visualization software that lets users browse large data volumes both as still images and movies. We did so by deploying an efficient image encoding, storage, and dissemination solution using the JPEG 2000 standard. This solution enables users to access remote images at different resolution levels as a single data stream. Users can view, manipulate, pan, zoom, and overlay JPEG 2000 compressed data quickly, without severe network bandwidth penalties. Besides viewing data, the browser provides third-party metadata and event catalog integration to quickly locate data of interest, as well as an interface to the Virtual Solar Observatory to download science-quality data. As part of the Helioviewer Project, JHelioviewer offers intuitive ways to browse large amounts of heterogeneous data remotely and provides an extensible and customizable open-source platform for the scientific community.

  1. Advancing global marine biogeography research with open-source GIS software and cloud-computing

    USGS Publications Warehouse

    Fujioka, Ei; Vanden Berghe, Edward; Donnelly, Ben; Castillo, Julio; Cleary, Jesse; Holmes, Chris; McKnight, Sean; Halpin, patrick

    2012-01-01

    Across many scientific domains, the ability to aggregate disparate datasets enables more meaningful global analyses. Within marine biology, the Census of Marine Life served as the catalyst for such a global data aggregation effort. Under the Census framework, the Ocean Biogeographic Information System was established to coordinate an unprecedented aggregation of global marine biogeography data. The OBIS data system now contains 31.3 million observations, freely accessible through a geospatial portal. The challenges of storing, querying, disseminating, and mapping a global data collection of this complexity and magnitude are significant. In the face of declining performance and expanding feature requests, a redevelopment of the OBIS data system was undertaken. Following an Open Source philosophy, the OBIS technology stack was rebuilt using PostgreSQL, PostGIS, GeoServer and OpenLayers. This approach has markedly improved the performance and online user experience while maintaining a standards-compliant and interoperable framework. Due to the distributed nature of the project and increasing needs for storage, scalability and deployment flexibility, the entire hardware and software stack was built on a Cloud Computing environment. The flexibility of the platform, combined with the power of the application stack, enabled rapid re-development of the OBIS infrastructure, and ensured complete standards-compliance.

  2. Exploring the Factors Influencing the Adoption of Open Source Software in Western Cape Schools

    ERIC Educational Resources Information Center

    Johnston, Kevin; Begg, Shameemah; Tanner, Maureen

    2013-01-01

    Open Source Software (OSS) presents many benefits to both the private and the public sectors, and has proven to be a viable solution in schools. Although a policy mandating the use of OSS exists in the Western Cape province of South Africa, very few schools in the province have adopted OSS. The education system in South Africa is currently facing…

  3. Facilitating Constructive Alignment in Power Systems Engineering Education Using Free and Open-Source Software

    ERIC Educational Resources Information Center

    Vanfretti, L.; Milano, F.

    2012-01-01

    This paper describes how the use of free and open-source software (FOSS) can facilitate the application of constructive alignment theory in power systems engineering education by enabling the deep learning approach in power system analysis courses. With this aim, this paper describes the authors' approach in using the Power System Analysis Toolbox…

  4. Promoting Conceptual Change through Active Learning Using Open Source Software for Physics Simulations

    ERIC Educational Resources Information Center

    Baser, Mustafa

    2006-01-01

    This paper reports upon an active learning approach that promotes conceptual change when studying direct current electricity circuits, using free open source software, "Qucs". The study involved a total of 102 prospective mathematics teacher students. Prior to instruction, students' understanding of direct current electricity was…

  5. Learning and Best Practices for Learning in Open-Source Software Communities

    ERIC Educational Resources Information Center

    Singh, Vandana; Holt, Lila

    2013-01-01

    This research is about participants who use open-source software (OSS) discussion forums for learning. Learning in online communities of education as well as non-education-related online communities has been studied under the lens of social learning theory and situated learning for a long time. In this research, we draw parallels among these two…

  6. PyPedal, an open source software package for pedigree analysis

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The open source software package PyPedal (http://pypedal.sourceforge.net/) was first released in 2002, and provided users with a set of simple tools for manipulating pedigrees. Its flexibility has been demonstrated by its used in a number of settings for large and small populations. After substantia...

  7. Advanced software development workstation project: Engineering scripting language. Graphical editor

    NASA Technical Reports Server (NTRS)

    1992-01-01

    Software development is widely considered to be a bottleneck in the development of complex systems, both in terms of development and in terms of maintenance of deployed systems. Cost of software development and maintenance can also be very high. One approach to reducing costs and relieving this bottleneck is increasing the reuse of software designs and software components. A method for achieving such reuse is a software parts composition system. Such a system consists of a language for modeling software parts and their interfaces, a catalog of existing parts, an editor for combining parts, and a code generator that takes a specification and generates code for that application in the target language. The Advanced Software Development Workstation is intended to be an expert system shell designed to provide the capabilities of a software part composition system.

  8. Open cyberGIS software for geospatial research and education in the big data era

    NASA Astrophysics Data System (ADS)

    Wang, Shaowen; Liu, Yan; Padmanabhan, Anand

    CyberGIS represents an interdisciplinary field combining advanced cyberinfrastructure, geographic information science and systems (GIS), spatial analysis and modeling, and a number of geospatial domains to improve research productivity and enable scientific breakthroughs. It has emerged as new-generation GIS that enable unprecedented advances in data-driven knowledge discovery, visualization and visual analytics, and collaborative problem solving and decision-making. This paper describes three open software strategies-open access, source, and integration-to serve various research and education purposes of diverse geospatial communities. These strategies have been implemented in a leading-edge cyberGIS software environment through three corresponding software modalities: CyberGIS Gateway, Toolkit, and Middleware, and achieved broad and significant impacts.

  9. Avionics Simulation, Development and Software Engineering

    NASA Technical Reports Server (NTRS)

    2002-01-01

    During this reporting period, all technical responsibilities were accomplished as planned. A close working relationship was maintained with personnel of the MSFC Avionics Department Software Group (ED14), the MSFC EXPRESS Project Office (FD31), and the Huntsville Boeing Company. Accomplishments included: performing special tasks; supporting Software Review Board (SRB), Avionics Test Bed (ATB), and EXPRESS Software Control Panel (ESCP) activities; participating in technical meetings; and coordinating issues between the Boeing Company and the MSFC Project Office.

  10. Services development toolkit for Open Research Data (Promarket)

    NASA Astrophysics Data System (ADS)

    Som de Cerff, W.; Schwichtenberg, H.; Gemünd, A.; Claus, S.; Reichwald, J.; Denvil, S.; Mazetti, P.; Nativi, S.

    2012-04-01

    According to the declaration of the Organisation for Economic Co-operation and Development (OECD) on Open Access: "OECD Principles and Guidelines for Access to Research Data from Public Funding" research data should be available for everyone and Europe follows these directions (Digital Agenda, N. Kroes). Data being 'open' does not mean directly applicable: research data are often complex to use and difficult to interpret by non-experts. Also, if extra services are needed, e.g. certain delivery guarantees, SLAs need to be negotiated. Comparable to OSS development models, where software is open and services and support are paid for, there is a large potential for commercial activities and services around this open and free research data. E.g. Climate, weather or data from instruments can be used to generate business values when offered as easy and reliable services for Apps integration. The project will design a toolkit for developers in research data centres. The tools will allow to develop services to provide research data and map business processes e.g. automatic service level agreements to their service to make open research data attractive for commercial and academic use by the centre and others. It will enable to build and develop open, reliable and scalable services and end products, e.g. accessible from end user devices such as smart phones. Researchers, interested citizen or company developers will be enabled to access open data as an "easy-to-use" service and aggregate it with other services. The project will address a broad range of developers and give them a toolkit in well-known settings, portable, scalable, open and useable in public development environments and tools. This topic will be addressed technically by utilizing service-oriented approaches based on open standards and protocols, combined with new programming models and techniques.

  11. Systematic Task Allocation Evaluation in Distributed Software Development

    NASA Astrophysics Data System (ADS)

    Münch, Jürgen; Lamersdorf, Ansgar

    Systematic task allocation to different development sites in global software development projects can open business and engineering perspectives and help to reduce risks and problems inherent in distributed development. Relying only on a single evaluation criterion such as development cost when distributing tasks to development sites has shown to be very risky and often does not lead to successful solutions in the long run. Task allocation in global software projects is challenging due to a multitude of impact factors and constraints. Systematic allocation decisions require the ability to evaluate and compare task allocation alternatives and to effectively establish customized task allocation practices in an organization. In this article, we present a customizable process for task allocation evaluation that is based on results from a systematic interview study with practitioners. In this process, the relevant criteria for evaluating task allocation alternatives are derived by applying principles from goal-oriented measurement. In addition, the customization of the process is demonstrated, related work and limitations are sketched, and an outlook on future work is given.

  12. Standardized development of computer software. Part 2: Standards

    NASA Technical Reports Server (NTRS)

    Tausworthe, R. C.

    1978-01-01

    This monograph contains standards for software development and engineering. The book sets forth rules for design, specification, coding, testing, documentation, and quality assurance audits of software; it also contains detailed outlines for the documentation to be produced.

  13. Developing sustainable software solutions for bioinformatics by the " Butterfly" paradigm.

    PubMed

    Ahmed, Zeeshan; Zeeshan, Saman; Dandekar, Thomas

    2014-01-01

    Software design and sustainable software engineering are essential for the long-term development of bioinformatics software. Typical challenges in an academic environment are short-term contracts, island solutions, pragmatic approaches and loose documentation. Upcoming new challenges are big data, complex data sets, software compatibility and rapid changes in data representation. Our approach to cope with these challenges consists of iterative intertwined cycles of development (" Butterfly" paradigm) for key steps in scientific software engineering. User feedback is valued as well as software planning in a sustainable and interoperable way. Tool usage should be easy and intuitive. A middleware supports a user-friendly Graphical User Interface (GUI) as well as a database/tool development independently. We validated the approach of our own software development and compared the different design paradigms in various software solutions.

  14. Two-step web-mining approach to study geology/geophysics-related open-source software projects

    NASA Astrophysics Data System (ADS)

    Behrends, Knut; Conze, Ronald

    2013-04-01

    Geology/geophysics is a highly interdisciplinary science, overlapping with, for instance, physics, biology and chemistry. In today's software-intensive work environments, geoscientists often encounter new open-source software from scientific fields that are only remotely related to the own field of expertise. We show how web-mining techniques can help to carry out systematic discovery and evaluation of such software. In a first step, we downloaded ~500 abstracts (each consisting of ~1 kb UTF-8 text) from agu-fm12.abstractcentral.com. This web site hosts the abstracts of all publications presented at AGU Fall Meeting 2012, the world's largest annual geology/geophysics conference. All abstracts belonged to the category "Earth and Space Science Informatics", an interdisciplinary label cross-cutting many disciplines such as "deep biosphere", "atmospheric research", and "mineral physics". Each publication was represented by a highly structured record with ~20 short data attributes, the largest authorship-record being the unstructured "abstract" field. We processed texts of the abstracts with the statistics software "R" to calculate a corpus and a term-document matrix. Using R package "tm", we applied text-mining techniques to filter data and develop hypotheses about software-development activities happening in various geology/geophysics fields. Analyzing the term-document matrix with basic techniques (e.g., word frequencies, co-occurences, weighting) as well as more complex methods (clustering, classification) several key pieces of information were extracted. For example, text-mining can be used to identify scientists who are also developers of open-source scientific software, and the names of their programming projects and codes can also be identified. In a second step, based on the intermediate results found by processing the conference-abstracts, any new hypotheses can be tested in another webmining subproject: by merging the dataset with open data from github

  15. From, by, and for the OSSD: Software Engineering Education Using an Open Source Software Approach

    ERIC Educational Resources Information Center

    Huang, Kun; Dong, Yifei; Ge, Xun

    2006-01-01

    Computing is a complex, multidisciplinary field that requires a range of professional proficiencies. Computing students are expected to develop in-depth knowledge and skills, integrate and apply their knowledge flexibly to solve complex problems, and work successfully in teams. However, many students who graduate with degrees in computing fail to…

  16. Software Estimation: Developing an Accurate, Reliable Method

    DTIC Science & Technology

    2011-08-01

    level 5 organizations. Defects identified here for CMM level 1 and level 5 are captured from Capers Jones who has identified software delivered... Capers , “Software Assessments, Benchmarks, and Best Practices”, Addison-Wesley Professional, April 2000. 1. At the AV-8B Joint System Support

  17. Facilitating Real-time Triage of Astronomical Data with Open Source Software

    NASA Astrophysics Data System (ADS)

    Khudikyan, S.; Mattmann, C. A.; Cinquini, L.; Hart, A. F.; Thompson, D. R.; Wagstaff, K.; Burke-Spolaor, S.; Tingay, S.; Wayth, R.; Deller, A.; Majid, W.; Lazio, J.; Jones, D. L.

    2013-12-01

    Relatively bright, millisecond-duration pulses of radio-frequency energy have been discovered recently at the Parkes radio telescope in Australia. These Fast Radio Bursts (FRBs) have properties consistent with extragalactic origin, and they may represent the discovery of a completely new class of astronomical objects. Models for the generation of these events are poorly constrained, in part because the Parkes radio telescope can locate the direction of the pulses to about 15 arcminute (60 arcminutes = 1 degree) precision. The Very Long Baseline Array (VLBA) is a network of 10 telescopes distributed across the United States. If it were to detect such a pulse, it could provide exceptionally precise localization of the pulse's direction (to better than a nanoradian), thus allowing possible identification of the celestial object from which the pulse originated. The challenge is that the data rate from the VLBA antennas can be as large as 20 Gb/s, and the VLBA was not designed to store the data from the individual antennas for any significant length of time. The VLBA Fast Radio Transients (V-FASTR) experiment has developed a real-time, scalable data 'triage' system that makes use of algorithms capable of discovering meaningful signals, and open source code stewarded at the Apache Software Foundation. This system is designed to identify potential FRBs during real-time processing of the VLBA data stream, save only the relevant bits for further (off-line) processing, and curate the data products. As such, the V-FASTR experiment exemplifies the software design for a distributed sensor network that generates data at rates requiring real-time or near-real-time processing. Building flexible portals and applications has become vital with the constantly expanding astronomical data. The V-FASTR collaborative review portal is built using the Apache OODT Balance framework due to the ease at which it integrates with the flexible search capabilities of Apache Solr. We utilize Apache

  18. Software development environments: Status and trends

    NASA Technical Reports Server (NTRS)

    Duffel, Larry E.

    1988-01-01

    Currently software engineers are the essential integrating factors tying several components together. The components consist of process, methods, computers, tools, support environments, and software engineers. The engineers today empower the tools versus the tools empowering the engineers. Some of the issues in software engineering are quality, managing the software engineering process, and productivity. A strategy to accomplish this is to promote the evolution of software engineering from an ad hoc, labor intensive activity to a managed, technology supported discipline. This strategy may be implemented by putting the process under management control, adopting appropriate methods, inserting the technology that provides automated support for the process and methods, collecting automated tools into an integrated environment and educating the personnel.

  19. An Open Software Platform for Sharing Water Resource Models, Code and Data

    NASA Astrophysics Data System (ADS)

    Knox, Stephen; Meier, Philipp; Mohamed, Khaled; Korteling, Brett; Matrosov, Evgenii; Huskova, Ivana; Harou, Julien; Rosenberg, David; Tilmant, Amaury; Medellin-Azuara, Josue; Wicks, Jon

    2016-04-01

    The modelling of managed water resource systems requires new approaches in the face of increasing future uncertainty. Water resources management models, even if applied to diverse problem areas, use common approaches such as representing the problem as a network of nodes and links. We propose a data management software platform, called Hydra, that uses this commonality to allow multiple models using a node-link structure to be managed and run using a single software system. Hydra's user interface allows users to manage network topology and associated data. Hydra feeds this data directly into a model, importing from and exporting to different file formats using Apps. An App connects Hydra to a custom model, a modelling system such as GAMS or MATLAB or to different file formats such as MS Excel, CSV and ESRI Shapefiles. Hydra allows users to manage their data in a single, consistent place. Apps can be used to run domain-specific models and allow users to work with their own required file formats. The Hydra App Store offers a collaborative space where model developers can publish, review and comment on Apps, models and data. Example Apps and open-source libraries are available in a variety of languages (Python, Java and .NET). The App Store can act as a hub for water resource modellers to view and share Apps, models and data easily. This encourages an ecosystem of development using a shared platform, resulting in more model integration and potentially greater unity within resource modelling communities. www.hydraplatform.org www.hydraappstore.com

  20. Walking the Talk: Adopting and Adapting Sustainable Scientific Software Development processes in a Small Biology Lab

    PubMed Central

    Crusoe, Michael R.; Brown, C. Titus

    2016-01-01

    The khmer software project provides both research and production functionality for largescale nucleic-acid sequence analysis. The software implements several novel data structures and algorithms that perform data pre-fltering for common bioinformatics tasks, including sequence mapping and de novo assembly. Development is driven by a small lab with one full-time developer (MRC), as well as several graduate students and a professor (CTB) who contribute regularly to research features. Here we describe our efforts to bring better design, testing, and more open development to the khmer software project as of version 1.1. The khmer software is developed openly at http://github.com/dib-lab/khmer/. PMID:27942385

  1. The Advanced Software Development and Commercialization Project

    SciTech Connect

    Gallopoulos, E. . Center for Supercomputing Research and Development); Canfield, T.R.; Minkoff, M.; Mueller, C.; Plaskacz, E.; Weber, D.P.; Anderson, D.M.; Therios, I.U. ); Aslam, S.; Bramley, R.; Chen, H.-C.; Cybenko, G.; Gallopoulos, E.; Gao, H.; Malony, A.; Sameh, A. . Center for Supercomputing Research

    1990-09-01

    This is the first of a series of reports pertaining to progress in the Advanced Software Development and Commercialization Project, a joint collaborative effort between the Center for Supercomputing Research and Development of the University of Illinois and the Computing and Telecommunications Division of Argonne National Laboratory. The purpose of this work is to apply techniques of parallel computing that were pioneered by University of Illinois researchers to mature computational fluid dynamics (CFD) and structural dynamics (SD) computer codes developed at Argonne. The collaboration in this project will bring this unique combination of expertise to bear, for the first time, on industrially important problems. By so doing, it will expose the strengths and weaknesses of existing techniques for parallelizing programs and will identify those problems that need to be solved in order to enable wide spread production use of parallel computers. Secondly, the increased efficiency of the CFD and SD codes themselves will enable the simulation of larger, more accurate engineering models that involve fluid and structural dynamics. In order to realize the above two goals, we are considering two production codes that have been developed at ANL and are widely used by both industry and Universities. These are COMMIX and WHAMS-3D. The first is a computational fluid dynamics code that is used for both nuclear reactor design and safety and as a design tool for the casting industry. The second is a three-dimensional structural dynamics code used in nuclear reactor safety as well as crashworthiness studies. These codes are currently available for both sequential and vector computers only. Our main goal is to port and optimize these two codes on shared memory multiprocessors. In so doing, we shall establish a process that can be followed in optimizing other sequential or vector engineering codes for parallel processors.

  2. Open Technology Development: Roadmap Plan

    DTIC Science & Technology

    2006-04-01

    Benevolent Dictator(s). In the case of the development of Linux, Linus Torvalds makes the final decision with respect to direction of the code...roadmap study: • Paul Brinkley, OSD, Business Transformation Office • Dale Christensen, SECNAV, DON CIO Office • Robert Gold, Associate Director for

  3. Software Uncertainty in Integrated Environmental Modelling: the role of Semantics and Open Science

    NASA Astrophysics Data System (ADS)

    de Rigo, Daniele

    2013-04-01

    under deep uncertainty. Technological Forecasting and Social Change. http://dx.doi.org/10.1016/j.techfore.2012.10.004 Bankes, S. C., 2002. Tools and techniques for developing policies for complex and uncertain systems. Proceedings of the National Academy of Sciences of the United States of America 99 (Suppl 3), 7263-7266. http://dx.doi.org/10.1073/pnas.092081399 Kandlikar, M., Risbey, J., Dessai, S., 2005. Representing and communicating deep uncertainty in climate-change assessments. Comptes Rendus Geoscience 337 (4), 443-455. http://dx.doi.org/10.1016/j.crte.2004.10.010 de Rigo, D., Corti, P., Caudullo, G., McInerney, D., Di Leo, M., San-Miguel-Ayanz, J., 2013. Toward Open Science at the European scale: Geospatial Semantic Array Programming for Integrated Environmental Modelling. Geophysical Research Abstracts 15, EGU General Assembly 2013 Rodriguez Aseretto, D., Di Leo, M., de Rigo, D., Corti, P., McInerney, D., Camia, A., San Miguel-Ayanz, J., 2013. Free and Open Source Software underpinning the European Forest Data Centre. Geophysical Research Abstracts 15, EGU General Assembly 2013 de Rigo, D., Corti, P., Caudullo, G., McInerney, D., Di Leo, M., San-Miguel-Ayanz, J., (exp. 2013). Supporting Environmental Modelling and Science-Policy Interface at European Scale with Geospatial Semantic Array Programming. In prep. Lempert, R. J., 2002. A new decision sciences for complex systems. Proceedings of the National Academy of Sciences of the United States of America 99 (Suppl 3), 7309-7313. http://dx.doi.org/10.1073/pnas.082081699 Kandlikar, M., Risbey, J., Dessai, S., 2005. Representing and communicating deep uncertainty in climate-change assessments. Comptes Rendus Geoscience 337 (4), 443-455. http://dx.doi.org/10.1016/j.crte.2004.10.010 Gober, P., Kirkwood, C. W., 2010. Vulnerability assessment of climate-induced water shortage in Phoenix. Proceedings of the National Academy of Sciences 107 (50), 21295-21299. http://dx.doi.org/10.1073/pnas.0911113107 de Rigo, D., 2012

  4. Multipath protection for data center services in OpenFlow-based software defined elastic optical networks

    NASA Astrophysics Data System (ADS)

    Yang, Hui; Cheng, Lei; Yuan, Jian; Zhang, Jie; Zhao, Yongli; Lee, Young

    2015-06-01

    With the rapid growth of data center services, the elastic optical network is a very promising networking architecture to interconnect data centers because it can elastically allocate spectrum tailored for various bandwidth requirements. In case of a link failure, to ensure a high-level quality of service (QoS) for user request after the failure becomes a research focus. In light of it, in this paper, we propose and experimentally demonstrate multipath protection for data center services in OpenFlow-based software defined elastic optical network testbed aiming at improving network reliability. We first propose an OpenFlow-based software defined elastic optical network architecture for data center service protection. Then, based on the proposed architecture, multipath protection scheme is figured based on the importance level of the service. To implement the proposed scheme in the architecture, OpenFlow protocol is extended to support multipath protection in elastic optical network. The performance of our proposed multipath protection scheme is evaluated by means of experiment on our OpenFlow-based testbed. The feasibility of our proposed scheme is also demonstrated in software defined elastic optical networks.

  5. Software Released by LEWICE 2.0 Ice Accretion Software Development Project

    NASA Technical Reports Server (NTRS)

    Potapczuk, Mark G.

    2000-01-01

    Computational icing simulation methods are making the transition from the realm of research to commonplace use in design and certification. As such, standards of software management, design, validation, and documentation must be adjusted to accommodate the increased expectations of the user community with respect to accuracy, reliability, capability, and usability. With this in mind, in collaboration with Glenn's Engineering Design and Analysis Division, the Icing Branch of the NASA Glenn Research Center at Lewis Field began a software improvement project focused on the two-dimensional ice accretion simulation tool LEWICE. This project is serving as an introduction to the concepts of software management and is intended to serve as a pilot project for future icing simulation code development. The LEWICE 2.0 Software Development Project consisted of two major elements: software management and software validation. The software management element consisted of identifying features of well-designed and well-managed software that are appropriate for an analytical prediction tool such as LEWICE and applying them to a revised version of the code. This element included tasks such as identification of software requirements, development and implementation of coding standards, and implementation of software revision control practices. With the application of these techniques, the LEWICE ice accretion code became a more stable and reliable software product. In addition, the lessons learned about software development and maintenance can be factored into future software projects at the outset. The software validation activity was an integral part of our effort to make LEWICE a more accurate and reliable analysis tool. Because of the efforts taken to extensively validate this software, LEWICE 2.0 is more robust than previous releases and can reproduce results accurately across several computing platforms. It also differs from previous versions in the extensive quantitative

  6. Takin: An open-source software for experiment planning, visualisation, and data analysis

    NASA Astrophysics Data System (ADS)

    Weber, Tobias; Georgii, Robert; Böni, Peter

    Due to their non-trivial resolution function, measurements on triple-axis spectrometers require extra care from the experimentalist in order to obtain optimal results and to avoid unwanted spurious artefacts. We present a free and open-source software system that aims to ease many of the tasks encountered during the planning phase, in the execution and in data treatment of experiments performed on neutron triple-axis spectrometers. The software is currently in use and has been successfully tested at the MLZ, but can be configured to work with other triple-axis instruments and instrument control systems.

  7. Happy software developers solve problems better: psychological measurements in empirical software engineering.

    PubMed

    Graziotin, Daniel; Wang, Xiaofeng; Abrahamsson, Pekka

    2014-01-01

    For more than thirty years, it has been claimed that a way to improve software developers' productivity and software quality is to focus on people and to provide incentives to make developers satisfied and happy. This claim has rarely been verified in software engineering research, which faces an additional challenge in comparison to more traditional engineering fields: software development is an intellectual activity and is dominated by often-neglected human factors (called human aspects in software engineering research). Among the many skills required for software development, developers must possess high analytical problem-solving skills and creativity for the software construction process. According to psychology research, affective states-emotions and moods-deeply influence the cognitive processing abilities and performance of workers, including creativity and analytical problem solving. Nonetheless, little research has investigated the correlation between the affective states, creativity, and analytical problem-solving performance of programmers. This article echoes the call to employ psychological measurements in software engineering research. We report a study with 42 participants to investigate the relationship between the affective states, creativity, and analytical problem-solving skills of software developers. The results offer support for the claim that happy developers are indeed better problem solvers in terms of their analytical abilities. The following contributions are made by this study: (1) providing a better understanding of the impact of affective states on the creativity and analytical problem-solving capacities of developers, (2) introducing and validating psychological measurements, theories, and concepts of affective states, creativity, and analytical-problem-solving skills in empirical software engineering, and (3) raising the need for studying the human factors of software engineering by employing a multidisciplinary viewpoint.

  8. Autonomous Aerobraking Development Software: Phase 2 Summary

    NASA Technical Reports Server (NTRS)

    Cianciolo, Alicia D.; Maddock, Robert W.; Prince, Jill L.; Bowes, Angela; Powell, Richard W.; White, Joseph P.; Tolson, Robert; O'Shaughnessy, Daniel; Carrelli, David

    2013-01-01

    NASA has used aerobraking at Mars and Venus to reduce the fuel required to deliver a spacecraft into a desired orbit compared to an all-propulsive solution. Although aerobraking reduces the propellant, it does so at the expense of mission duration, large staff, and DSN coverage. These factors make aerobraking a significant cost element in the mission design. By moving on-board the current ground-based tasks of ephemeris determination, atmospheric density estimation, and maneuver sizing and execution, a flight project would realize significant cost savings. The NASA Engineering and Safety Center (NESC) sponsored Phase 1 and 2 of the Autonomous Aerobraking Development Software (AADS) study, which demonstrated the initial feasibility of moving these current ground-based functions to the spacecraft. This paper highlights key state-of-the-art advancements made in the Phase 2 effort to verify that the AADS algorithms are accurate, robust and ready to be considered for application on future missions that utilize aerobraking. The advancements discussed herein include both model updates and simulation and benchmark testing. Rigorous testing using observed flight atmospheres, operational environments and statistical analysis characterized the AADS operability in a perturbed environment.

  9. Development of Poincare Software to Predict Arrythmias

    NASA Technical Reports Server (NTRS)

    Maaliki, Samer

    2003-01-01

    The most distressing types of heart malfunction occur because of an abnormal rhythm of the heart. Cardiac arrythmias can be caused by abnormal rhythmicity of the pacemaker, electrolyte disturbances, blockage of the transmission of the electric impulse through the heart, and other abnormalities. There is strong evidence that space flight is associated with decreased cardiac electrical stability that may pose a life threatening risk to astronauts. For example, during the Skylab missions, a crewmember had a five beat run of ventricular tachycardia during lower body negative pressure. Also, analysis of nine 24-hour Holter monitor recordings obtained during long term spaceflight on Mir revealed one 14-beat run of ventricular tachycardia. A Mir cosmonaut was replaced in 1986 because of cardiac dysrhythmias. Most recently, in July of 1997, a Mir commander was unable to participate in the Spektr module repair due to complaints of an irregular heart rhythm. Despite these examples, possible mechanisms of arrhythmias and countermeasure strategies have barely been addressed. The Poincare method has been proposed as a technique that might potentially predict life-threatening arrhythmias before they occur. According to this method, each RR interval obtained from an EKG recording is plotted sequentially vs. the previous RR interval. Several studies using the method have demonstrated a strong correlation between the shape of the Poincare plot and ventricular arrhythmia. Our purpose was to develop an automated software program that detects the R peaks from an EKG recording while simultaneously displaying the Poincare plot and other related parameters.

  10. A distributed database system for sharing geological information using free and open source software

    NASA Astrophysics Data System (ADS)

    Nemoto, T.; Masumoto, S.; Nonogaki, S.; Raghavan, V.

    2013-12-01

    Recently, geological information, such as borehole data and geological maps, and seismic, volcanic or landslide hazard maps are published on the Internet by the national government, local governments, and research institutes in Japan. Most web systems that deliver such geological information consist of a centralized database, which are located and maintained in one location. It is easier to manage the centralized database system because all data resides in a single location. However, if the database breaks, the web service will not be available. In the present study, a distributed database system has been developed to continue delivering geological information even if a database breaks. The distributed database system has an advantage that the system remains available although an individual database is down. All the software used to construct the system is free and open source software. PostgreSQL and pgpool-II are utilized to construct a distributed database. PostgreSQL is a powerful relational database management system. Pgpool-II has a function for management of multiple PostgreSQL servers. OpenLayers is used for the web map clients. Replication and Parallel query modes with pgpool-II are utilized for distribution of a database. It is possible to create a real-time backup on 2 or more PostgreSQL clusters by replication mode. If a database breaks, the backup database will works to continue delivering geological information. Data can be split among multiple servers by using parallel query mode. The rules to send partitioned data to an appropriate cluster are contained in the System Database. If large-scale data is searched, the overall execution time will be reduced. The prototype for sharing 1500 borehole data has been successfully implemented by combination of PostgreSQL and pgpool-II on Linux server. Further development and improvement of the system are necessary to manage and analyze various spatial data in addition to borehole data. This study was supported

  11. UCVM: Open Source Software for Understanding and Delivering 3D Velocity Models

    NASA Astrophysics Data System (ADS)

    Gill, D.; Small, P.; Maechling, P. J.; Jordan, T. H.; Shaw, J. H.; Plesch, A.; Chen, P.; Lee, E. J.; Taborda, R.; Olsen, K. B.; Callaghan, S.

    2014-12-01

    Physics-based ground motion simulations can calculate the propagation of earthquake waves through 3D velocity models of the Earth. The Southern California Earthquake Center (SCEC) has developed the Unified Community Velocity Model (UCVM) framework to help researchers build structured or unstructured velocity meshes from 3D velocity models for use in wave propagation simulations. The UCVM software framework makes it easy to extract P and S wave propagation speeds and other material properties from 3D velocity models by providing a common interface through which researchers can query earth models for a given location and depth. Currently, the platform supports multiple California models, including SCEC CVM-S4 and CVM-H 11.9.1, and has been designed to support models from any region on earth. UCVM is currently being use to generate velocity meshes for many SCEC wave propagation codes, including AWP-ODC-SGT and Hercules. In this presentation, we describe improvements to the UCVM software. The current version, UCVM 14.3.0, released in March of 2014, supports the newest Southern California velocity model, CVM-S4.26, which was derived from 26 full-3D tomographic iterations using CVM-S4 as the starting model (Lee et al., this meeting), and the Broadband 1D velocity model used in the CyberShake 14.2 study. We have ported UCVM to multiple Linux distributions and OS X. Also included in this release is the ability to add small-scale stochastic heterogeneities to extract Cartesian meshes for use in high-frequency ground motion simulations. This tool was built using the C language open-source FFT library, FFTW. The stochastic parameters (Hurst exponent, correlation length, and the horizontal/vertical aspect ratio) can be customized by the user. UCVM v14.3.0 also provides visualization scripts for constructing cross-sections, horizontal slices, basin depths, and Vs30 maps. The interface allows researchers to visually review velocity models . Also, UCVM v14.3.0 can extract

  12. Software Development Offshoring Competitiveness: A Case Study of ASEAN Countries

    ERIC Educational Resources Information Center

    Bui, Minh Q.

    2011-01-01

    With the success of offshoring within the American software industry, corporate executives are moving their software developments overseas. The member countries of the Association of Southeast Asian Nations (ASEAN) have become a preferred destination. However, there is a lack of published studies on the region's software competitiveness in…

  13. Formal methods in the development of safety critical software systems

    SciTech Connect

    Williams, L.G.

    1991-11-15

    As the use of computers in critical control systems such as aircraft controls, medical instruments, defense systems, missile controls, and nuclear power plants has increased, concern for the safety of those systems has also grown. Much of this concern has focused on the software component of those computer-based systems. This is primarily due to historical experience with software systems that often exhibit larger numbers of errors than their hardware counterparts and the fact that the consequences of a software error may endanger human life, property, or the environment. A number of different techniques have been used to address the issue of software safety. Some are standard software engineering techniques aimed at reducing the number of faults in a software protect, such as reviews and walkthroughs. Others, including fault tree analysis, are based on identifying and reducing hazards. This report examines the role of one such technique, formal methods, in the development of software for safety critical systems. The use of formal methods to increase the safety of software systems is based on their role in reducing the possibility of software errors that could lead to hazards. The use of formal methods in the development of software systems is controversial. Proponents claim that the use of formal methods can eliminate errors from the software development process, and produce programs that are probably correct. Opponents claim that they are difficult to learn and that their use increases development costs unacceptably. This report discusses the potential of formal methods for reducing failures in safety critical software systems.

  14. The Development, Use, and Dissemination of Academic Software.

    ERIC Educational Resources Information Center

    Weissman, Ronald F. E.; And Others

    1987-01-01

    This special theme issue is dedicated to topics related to courseware in higher education. Aspects addressed include faculty development of software; new technologies and their effects on knowledge; microcomputer-based software; courseware publishing; information sharing and software distribution; and future teaching and research projects. (LRW)

  15. Project evaluates POSC specifications for infill drilling. [Petrochemical Open Software Corp

    SciTech Connect

    Zahniser, D.L. ); Merritt, R.W. ); Chan, C.K. )

    1994-05-16

    A project is under way to build data-loading tools and create an integrated oil and gas production data base using specifications developed during the last 3 years by the Petrotechnical Open Software Corp. (POSC). The Industry Pilot Project (IPP) Phase 1 is a collaborative effort between seven oil companies. The participating oil companies have provided a large set of data from a producing North American oil and gas field and money, hardware, and personnel. Many companies have already streamlined their infill drilling processes and receive significant incremental benefits. But current information technology can often be a stumbling block. Cross-disciplinary use of information is the key goal of these streamlining efforts, but much time is lost in finding, reformatting, accessing, and determining the quality of data. This project sets out to prove how POSC specifications can help reduce the cost and time for developing a field, improved the quality of the decision-making process, minimize the number of communication barriers and, most importantly, change technology from a hurdle to a seamless step. The project demonstrates that POSC specifications are an enabling technology that can dramatically improve the way oil companies and suppliers operate.

  16. Happy software developers solve problems better: psychological measurements in empirical software engineering

    PubMed Central

    Wang, Xiaofeng; Abrahamsson, Pekka

    2014-01-01

    For more than thirty years, it has been claimed that a way to improve software developers’ productivity and software quality is to focus on people and to provide incentives to make developers satisfied and happy. This claim has rarely been verified in software engineering research, which faces an additional challenge in comparison to more traditional engineering fields: software development is an intellectual activity and is dominated by often-neglected human factors (called human aspects in software engineering research). Among the many skills required for software development, developers must possess high analytical problem-solving skills and creativity for the software construction process. According to psychology research, affective states—emotions and moods—deeply influence the cognitive processing abilities and performance of workers, including creativity and analytical problem solving. Nonetheless, little research has investigated the correlation between the affective states, creativity, and analytical problem-solving performance of programmers. This article echoes the call to employ psychological measurements in software engineering research. We report a study with 42 participants to investigate the relationship between the affective states, creativity, and analytical problem-solving skills of software developers. The results offer support for the claim that happy developers are indeed better problem solvers in terms of their analytical abilities. The following contributions are made by this study: (1) providing a better understanding of the impact of affective states on the creativity and analytical problem-solving capacities of developers, (2) introducing and validating psychological measurements, theories, and concepts of affective states, creativity, and analytical-problem-solving skills in empirical software engineering, and (3) raising the need for studying the human factors of software engineering by employing a multidisciplinary viewpoint

  17. Free/Libre Open Source Software Implementation in Schools: Evidence from the Field and Implications for the Future

    ERIC Educational Resources Information Center

    Lin, Yu-Wei; Zini, Enrico

    2008-01-01

    This empirical paper shows how free/libre open source software (FLOSS) contributes to mutual and collaborative learning in an educational environment. Unlike proprietary software, FLOSS allows extensive customisation of software to support the needs of local users better. This also allows users to participate more proactively in the development…

  18. BioSig: the free and open source software library for biomedical signal processing.

    PubMed

    Vidaurre, Carmen; Sander, Tilmann H; Schlögl, Alois

    2011-01-01

    BioSig is an open source software library for biomedical signal processing. The aim of the BioSig project is to foster research in biomedical signal processing by providing free and open source software tools for many different application areas. Some of the areas where BioSig can be employed are neuroinformatics, brain-computer interfaces, neurophysiology, psychology, cardiovascular systems, and sleep research. Moreover, the analysis of biosignals such as the electroencephalogram (EEG), electrocorticogram (ECoG), electrocardiogram (ECG), electrooculogram (EOG), electromyogram (EMG), or respiration signals is a very relevant element of the BioSig project. Specifically, BioSig provides solutions for data acquisition, artifact processing, quality control, feature extraction, classification, modeling, and data visualization, to name a few. In this paper, we highlight several methods to help students and researchers to work more efficiently with biomedical signals.

  19. Evaluating software development characteristics: Assessment of software measures in the Software Engineering Laboratory. [reliability engineering

    NASA Technical Reports Server (NTRS)

    Basili, V. R.

    1981-01-01

    Work on metrics is discussed. Factors that affect software quality are reviewed. Metrics is discussed in terms of criteria achievements, reliability, and fault tolerance. Subjective and objective metrics are distinguished. Product/process and cost/quality metrics are characterized and discussed.

  20. An evaluation of the Interactive Software Invocation System (ISIS) for software development applications. [flight software

    NASA Technical Reports Server (NTRS)

    Noland, M. S.

    1981-01-01

    The Interactive Software Invocation System (ISIS), which allows a user to build, modify, control, and process a total flight software system without direct communications with the host computer, is described. This interactive data management system provides the user with a file manager, text editor, a tool invoker, and an Interactive Programming Language (IPL). The basic file design of ISIS is a five level hierarchical structure. The file manager controls this hierarchical file structure and permits the user to create, to save, to access, and to purge pages of information. The text editor is used to manipulate pages of text to be modified and the tool invoker allows the user to communicate with the host computer through a RUN file created by the user. The IPL is based on PASCAL and contains most of the statements found in a high-level programming language. In order to evaluate the effectiveness of the system as applied to a flight project, the collection of software components required to support the Annular Suspension and Pointing System (ASPS) flight project were integrated using ISIS. The ASPS software system and its integration into ISIS is described.

  1. PaDEL-DDPredictor: open-source software for PD-PK-T prediction.

    PubMed

    He, Yuye; Liew, Chin Yee; Sharma, Nitin; Woo, Sze Kwang; Chau, Yi Ting; Yap, Chun Wei

    2013-03-15

    ADMET (absorption, distribution, metabolism, excretion, and toxicity)-related failure of drug candidates is a major issue for the pharmaceutical industry today. Prediction of PD-PK-T properties using in silico tools has become very important in pharmaceutical research to reduce cost and enhance efficiency. PaDEL-DDPredictor is an in silico tool for rapid prediction of PD-PK-T properties of compounds from their chemical structures. It is free and open-source software that, has both graphical user interface and command line interface, can work on all major platforms (Windows, Linux, and MacOS) and supports more than 90 different molecular file formats. The software can be downloaded from http://padel.nus.edu.sg/software/padelddpredictor.

  2. Group Maintenance Behaviors of Core and Peripherial Members of Free/Libre Open Source Software Teams

    NASA Astrophysics Data System (ADS)

    Scialdone, Michael J.; Li, Na; Heckman, Robert; Crowston, Kevin

    Group Maintenance is pro-social, discretionary, and relation-building behavior that occurs between members of groups in order to maintain reciprocal trust and cooperation. This paper considers how Free/libre Open Source Software (FLOSS) teams demonstrate such behaviors within the context of e-mail, as this is the primary medium through which such teams communicate. We compare group maintenance behaviors between both core and peripheral members of these groups, as well as behaviors between a group that remains producing software today and one which has since dissolved. Our findings indicate that negative politeness tactics (those which show respect for the autonomy of others) may be the most instrumental group maintenance behaviors that contribute to a FLOSS group’s ability to survive and continue software production.

  3. Normal-mode function representation of global 3-D data sets: open-access software for the atmospheric research community

    NASA Astrophysics Data System (ADS)

    Žagar, N.; Kasahara, A.; Terasaki, K.; Tribbia, J.; Tanaka, H.

    2015-04-01

    This article presents new software for the analysis of global dynamical fields in (re)analyses, weather forecasts and climate models. A new diagnostic tool, developed within the MODES project, allows one to diagnose properties of balanced and inertio-gravity (IG) circulations across many scales. In particular, the IG spectrum, which has only recently become observable, can be studied simultaneously in the mass and wind fields while considering the whole model depth in contrast to the majority of studies. The paper includes the theory of normal-mode function (NMF) expansion, technical details of the Fortran 90 code, examples of namelists which control the software execution and outputs of the software application on the ERA Interim reanalysis data set. The applied libraries and default compiler are from the open-source domain. A limited understanding of Fortran suffices for the successful implementation of the software. The presented application of the software to the ERA Interim data set reveals several aspects of the large-scale circulation after it has been partitioned into the linearly balanced and IG components. The global energy distribution is dominated by the balanced energy while the IG modes contribute around 10% of the total wave energy. However, on sub-synoptic scales, IG energy dominates and it is associated with the main features of tropical variability on all scales. The presented energy distribution and features of the zonally averaged and equatorial circulation provide a reference for the validation of climate models.

  4. JHelioviewer: Open-Source Software for Discovery and Image Access in the Petabyte Age

    NASA Astrophysics Data System (ADS)

    Mueller, D.; Dimitoglou, G.; Garcia Ortiz, J.; Langenberg, M.; Nuhn, M.; Dau, A.; Pagel, S.; Schmidt, L.; Hughitt, V. K.; Ireland, J.; Fleck, B.

    2011-12-01

    The unprecedented torrent of data returned by the Solar Dynamics Observatory is both a blessing and a barrier: a blessing for making available data with significantly higher spatial and temporal resolution, but a barrier for scientists to access, browse and analyze them. With such staggering data volume, the data is accessible only from a few repositories and users have to deal with data sets effectively immobile and practically difficult to download. From a scientist's perspective this poses three challenges: accessing, browsing and finding interesting data while avoiding the proverbial search for a needle in a haystack. To address these challenges, we have developed JHelioviewer, an open-source visualization software that lets users browse large data volumes both as still images and movies. We did so by deploying an efficient image encoding, storage, and dissemination solution using the JPEG 2000 standard. This solution enables users to access remote images at different resolution levels as a single data stream. Users can view, manipulate, pan, zoom, and overlay JPEG 2000 compressed data quickly, without severe network bandwidth penalties. Besides viewing data, the browser provides third-party metadata and event catalog integration to quickly locate data of interest, as well as an interface to the Virtual Solar Observatory to download science-quality data. As part of the ESA/NASA Helioviewer Project, JHelioviewer offers intuitive ways to browse large amounts of heterogeneous data remotely and provides an extensible and customizable open-source platform for the scientific community. In addition, the easy-to-use graphical user interface enables the general public and educators to access, enjoy and reuse data from space missions without barriers.

  5. Leveraging Open Source Software to Create Technical Animations of Scientific Data

    DTIC Science & Technology

    2006-09-01

    packages such as Maya , Houdini, and 3D Studio Max, while in many instances, an open source package such as Blender3D would suffice. 15. SUBJECT TERMS... Autodesk , Inc. 2Houdini is a registered trademark of Side Effects Software, Inc. 3Lightwave is a registered trademark of NewTek, Inc. 4Python is a...Studio Max, and Maya , all professional programs used by Hollywood studios such as Pixar. The user interface for Blender3D is highly customizable and

  6. The Challenge of Heterogeneously Licensed Systems in Open Architecture Software Ecosystems

    DTIC Science & Technology

    2010-05-01

    Systems in Open Architecture Software Ecosystems Walt Scacchi —Walt Scacchi is a senior research scientist and research faculty member at the...systems (HLSs) (German & Hassan, 2009; Alspaugh & Scacchi , 2008; Alspaugh, Asuncion & Scacchi , 2009a, May) by examining the role of component licenses in...Tools, Copyright 2005-2008 Novell, Inc. 14. libcurl. Copyright (c) 1996-2008, Daniel Stenberg < daniel @haxx.se>. 15. PostgreSQL Database Management

  7. WE-D-9A-06: Open Source Monitor Calibration and Quality Control Software for Enterprise Display Management

    SciTech Connect

    Bevins, N; Vanderhoek, M; Lang, S; Flynn, M

    2014-06-15

    Purpose: Medical display monitor calibration and quality control present challenges to medical physicists. The purpose of this work is to demonstrate and share experiences with an open source package that allows for both initial monitor setup and routine performance evaluation. Methods: A software package, pacsDisplay, has been developed over the last decade to aid in the calibration of all monitors within the radiology group in our health system. The software is used to calibrate monitors to follow the DICOM Grayscale Standard Display Function (GSDF) via lookup tables installed on the workstation. Additional functionality facilitates periodic evaluations of both primary and secondary medical monitors to ensure satisfactory performance. This software is installed on all radiology workstations, and can also be run as a stand-alone tool from a USB disk. Recently, a database has been developed to store and centralize the monitor performance data and to provide long-term trends for compliance with internal standards and various accrediting organizations. Results: Implementation and utilization of pacsDisplay has resulted in improved monitor performance across the health system. Monitor testing is now performed at regular intervals and the software is being used across multiple imaging modalities. Monitor performance characteristics such as maximum and minimum luminance, ambient luminance and illuminance, color tracking, and GSDF conformity are loaded into a centralized database for system performance comparisons. Compliance reports for organizations such as MQSA, ACR, and TJC are generated automatically and stored in the same database. Conclusion: An open source software solution has simplified and improved the standardization of displays within our health system. This work serves as an example method for calibrating and testing monitors within an enterprise health system.

  8. Open-source MFIX-DEM software for gas-solids flows: Part II Validation studies

    SciTech Connect

    Li, Tingwen; Garg, Rahul; Galvin, Janine; Pannala, Sreekanth

    2012-01-01

    With rapid advancements in computer hardware and numerical algorithms, computational fluid dynamics (CFD) has been increasingly employed as a useful tool for investigating the complex hydrodynamics inherent in multiphase flows. An important step during the development of a CFD model and prior to its application is conducting careful and comprehensive verification and validation studies. Accordingly, efforts to verify and validate the open-source MFIX-DEM software, which can be used for simulating the gas solids flow using an Eulerian reference frame for the continuum fluid and a Lagrangian discrete framework (Discrete Element Method) for the particles, have been made at the National Energy Technology Laboratory (NETL). In part I of this paper, extensive verification studies were presented and in this part, detailed validation studies of MFIX-DEM are presented. A series of test cases covering a range of gas solids flow applications were conducted. In particular the numerical results for the random packing of a binary particle mixture, the repose angle of a sandpile formed during a side charge process, velocity, granular temperature, and voidage profiles from a bounded granular shear flow, lateral voidage and velocity profiles from a monodisperse bubbling fluidized bed, lateral velocity profiles from a spouted bed, and the dynamics of segregation of a binary mixture in a bubbling bed were compared with available experimental data, and in some instances with empirical correlations. In addition, sensitivity studies were conducted for various parameters to quantify the error in the numerical simulation.

  9. Open-Source MFIX-DEM Software for Gas-Solids Flows: Part II - Validation Studies

    SciTech Connect

    Li, Tingwen

    2012-04-01

    With rapid advancements in computer hardware and numerical algorithms, computational fluid dynamics (CFD) has been increasingly employed as a useful tool for investigating the complex hydrodynamics inherent in multiphase flows. An important step during the development of a CFD model and prior to its application is conducting careful and comprehensive verification and validation studies. Accordingly, efforts to verify and validate the open-source MFIX-DEM software, which can be used for simulating the gas–solids flow using an Eulerian reference frame for the continuum fluid and a Lagrangian discrete framework (Discrete Element Method) for the particles, have been made at the National Energy Technology Laboratory (NETL). In part I of this paper, extensive verification studies were presented and in this part, detailed validation studies of MFIX-DEM are presented. A series of test cases covering a range of gas–solids flow applications were conducted. In particular the numerical results for the random packing of a binary particle mixture, the repose angle of a sandpile formed during a side charge process, velocity, granular temperature, and voidage profiles from a bounded granular shear flow, lateral voidage and velocity profiles from a monodisperse bubbling fluidized bed, lateral velocity profiles from a spouted bed, and the dynamics of segregation of a binary mixture in a bubbling bed were compared with available experimental data, and in some instances with empirical correlations. In addition, sensitivity studies were conducted for various parameters to quantify the error in the numerical simulation.

  10. gprMax: Open source software to simulate electromagnetic wave propagation for Ground Penetrating Radar

    NASA Astrophysics Data System (ADS)

    Warren, Craig; Giannopoulos, Antonios; Giannakis, Iraklis

    2016-12-01

    gprMax is open source software that simulates electromagnetic wave propagation, using the Finite-Difference Time-Domain (FDTD) method, for the numerical modelling of Ground Penetrating Radar (GPR). gprMax was originally developed in 1996 when numerical modelling using the FDTD method and, in general, the numerical modelling of GPR were in their infancy. Current computing resources offer the opportunity to build detailed and complex FDTD models of GPR to an extent that was not previously possible. To enable these types of simulations to be more easily realised, and also to facilitate the addition of more advanced features, gprMax has been redeveloped and significantly modernised. The original C-based code has been completely rewritten using a combination of Python and Cython programming languages. Standard and robust file formats have been chosen for geometry and field output files. New advanced modelling features have been added including: an unsplit implementation of higher order Perfectly Matched Layers (PMLs) using a recursive integration approach; diagonally anisotropic materials; dispersive media using multi-pole Debye, Drude or Lorenz expressions; soil modelling using a semi-empirical formulation for dielectric properties and fractals for geometric characteristics; rough surface generation; and the ability to embed complex transducers and targets.

  11. The development model of software product line based AOP

    NASA Astrophysics Data System (ADS)

    Yin, JingHai

    2011-10-01

    In this paper, we proposed a development model of MIS (management information system) software based aspect-oriented programming. MIS software will be the full separation of concerns, and establish corresponding platform-independent model, the dynamic weaving of aspects does not require all the static or fixed in weaver weaving in specific areas and at the same time Optimization, reducing system complexity and improve software development efficiency and speed. While the description and implementation of all aspects of the software industry chain assigned to the various levels of development team to complete, MIS can help resolve the current heavy workload of the software development process, low developing level, low software reuse rate, more duplication work of effort Problems.

  12. Team Software Development for Aerothermodynamic and Aerodynamic Analysis and Design

    NASA Technical Reports Server (NTRS)

    Alexandrov, N.; Atkins, H. L.; Bibb, K. L.; Biedron, R. T.; Carpenter, M. H.; Gnoffo, P. A.; Hammond, D. P.; Jones, W. T.; Kleb, W. L.; Lee-Rausch, E. M.

    2003-01-01

    A collaborative approach to software development is described. The approach employs the agile development techniques: project retrospectives, Scrum status meetings, and elements of Extreme Programming to efficiently develop a cohesive and extensible software suite. The software product under development is a fluid dynamics simulator for performing aerodynamic and aerothermodynamic analysis and design. The functionality of the software product is achieved both through the merging, with substantial rewrite, of separate legacy codes and the authorship of new routines. Examples of rapid implementation of new functionality demonstrate the benefits obtained with this agile software development process. The appendix contains a discussion of coding issues encountered while porting legacy Fortran 77 code to Fortran 95, software design principles, and a Fortran 95 coding standard.

  13. Overview of software development at the parabolic dish test site

    NASA Technical Reports Server (NTRS)

    Miyazono, C. K.

    1985-01-01

    The development history of the data acquisition and data analysis software is discussed. The software development occurred between 1978 and 1984 in support of solar energy module testing at the Jet Propulsion Laboratory's Parabolic Dish Test Site, located within Edwards Test Station. The development went through incremental stages, starting with a simple single-user BASIC set of programs, and progressing to the relative complex multi-user FORTRAN system that was used until the termination of the project. Additional software in support of testing is discussed including software in support of a meteorological subsystem and the Test Bed Concentrator Control Console interface. Conclusions and recommendations for further development are discussed.

  14. Noviceware: a model for learning the software development process.

    PubMed

    Slate, M A

    1992-01-01

    Students and nursing faculty without formal computer science training can collaborate within an independent study structure to assist the student in gaining experience with the fundamentals of software development. The systems development life cycle approach provides an essential map to structure such independent studies. This article describes the development within an academic setting of a computerized research management system. The software builds a database of research case demographic data and data from a 65-item tool used in scoring videotapes of caregiver-infant interactions. For students and faculty contemplating similar projects, recommendations about planning software development experiences and securing hardware, software, and expert resources are provided.

  15. Development of a New VLBI Data Analysis Software

    NASA Technical Reports Server (NTRS)

    Bolotin, Sergei; Gipson, John M.; MacMillan, Daniel S.

    2010-01-01

    We present an overview of a new VLBI analysis software under development at NASA GSFC. The new software will replace CALC/SOLVE and many related utility programs. It will have the capabilities of the current system as well as incorporate new models and data analysis techniques. In this paper we give a conceptual overview of the new software. We formulate the main goals of the software. The software should be flexible and modular to implement models and estimation techniques that currently exist or will appear in future. On the other hand it should be reliable and possess production quality for processing standard VLBI sessions. Also, it needs to be capable of processing observations from a fully deployed network of VLBI2010 stations in a reasonable time. We describe the software development process and outline the software architecture.

  16. Flight dynamics system software development environment (FDS/SDE) tutorial

    NASA Technical Reports Server (NTRS)

    Buell, John; Myers, Philip

    1986-01-01

    A sample development scenario using the Flight Dynamics System Software Development Environment (FDS/SDE) is presented. The SDE uses a menu-driven, fill-in-the-blanks format that provides online help at all steps, thus eliminating lengthy training and allowing immediate use of this new software development tool.

  17. Space and Missile Systems Center Standard: Software Development

    DTIC Science & Technology

    2015-01-16

    SPACE AND MISSILE SYSTEMS CENTER STANDARD SOFTWARE DEVELOPMENT APPROVED FOR PUBLIC RELEASE; DISTRIBUTION IS UNLIMITED Report...REPORT TYPE N/A 3. DATES COVERED - 4. TITLE AND SUBTITLE Space and Missile Systems Center Standard: Software Development 5a. CONTRACT...technology developments . 2. This revised SMC standard comprises the text of The Aerospace Corporation report number TR-RS-2015-00012, entitled

  18. The Elements of an Effective Software Development Plan - Software Development Process Guidebook

    DTIC Science & Technology

    2011-11-11

    Title Revision Date Document Number Software Estimating Guide Document Date ISO 9001 Quality Program Document Date ISO /IEC 15939 Software...SI Category—Example 2-29 Table 4.2.10.1. Candidate Software Management and Quality Control Plans—Example 2-39 Table 5. Contents of SDP Section 5 2...Roles and Responsibilities of the Software Configuration Management — Example 3-12 Table AGI-10. Roles and Responsibilities of the Software Quality

  19. Sustainability of Open-Source Software Organizations as Underpinning for Sustainable Interoperability on Large Scales

    NASA Astrophysics Data System (ADS)

    Fulker, D. W.; Gallagher, J. H. R.

    2015-12-01

    OPeNDAP's Hyrax data server is an open-source framework fostering interoperability via easily-deployed Web services. Compatible with solutions listed in the (PA001) session description—federation, rigid standards and brokering/mediation—the framework can support tight or loose coupling, even with dependence on community-contributed software. Hyrax is a Web-services framework with a middleware-like design and a handler-style architecture that together reduce the interoperability challenge (for N datatypes and M user contexts) to an O(N+M) problem, similar to brokering. Combined with an open-source ethos, this reduction makes Hyrax a community tool for gaining interoperability. E.g., in its response to the Big Earth Data Initiative (BEDI), NASA references OPeNDAP-based interoperability. Assuming its suitability, the question becomes: how sustainable is OPeNDAP, a small not-for-profit that produces open-source software, i.e., has no software-sales? In other words, if geoscience interoperability depends on OPeNDAP and similar organizations, are those entities in turn sustainable? Jim Collins (in Good to Great) highlights three questions that successful companies can answer (paraphrased here): What is your passion? Where is your world-class excellence? What drives your economic engine? We attempt to shed light on OPeNDAP sustainability by examining these. Passion: OPeNDAP has a focused passion for improving the effectiveness of scientific data sharing and use, as deeply-cooperative community endeavors. Excellence: OPeNDAP has few peers in remote, scientific data access. Skills include computer science with experience in data science, (operational, secure) Web services, and software design (for servers and clients, where the latter vary from Web pages to standalone apps and end-user programs). Economic Engine: OPeNDAP is an engineering services organization more than a product company, despite software being key to OPeNDAP's reputation. In essence, provision of

  20. End User Software Development for Transportation Applications.

    DTIC Science & Technology

    1987-09-01

    patience, attention, and guidance throughout this research project. I also wish to thank Captain Demetrius " Glass of the HQ USAF Transportation Plans and...necessary management and direction to refine non-standardized, interim software computer programs. According to Captain Demetrius Glass of the

  1. Developing Software Product Lines for Science Data Systems (Invited)

    NASA Astrophysics Data System (ADS)

    Crichton, D. J.; Hughes, J. S.; Mattmann, C. A.; Law, E.; Hardman, S.

    2010-12-01

    Software reuse has traditionally been a challenging proposition. While the allure of reusing software has great appeal to increasing stability and reducing software costs, there has been limited success in building software that can be efficiently reused. In many cases, reuse is limited to the reuse of software expertise or repurposing existing software code. While there are certainly cultural challenges involved in reusing software, much of the challenge can be traced back to the strategy involved in developing reusable software. The discipline of software architecture plays an important role since software reuse is highly dependent on developing a reference architecture that can be used for the construction of software product lines. All too often software reference architectures are implicit or are highly focused on specific implementations. The challenge is developing a reference architecture that identifies core patterns that exist across many systems at appropriate level of abstraction and then developing a reference implementation that can serve as a reusable product line. At the Jet Propulsion Laboratory (JPL), we have been involved in developing both reference architectures and software product lines for science data systems [1]. These reference architectures identify common patterns in data capture, data processing and product generation, data discovery, data access and distribution, and data movement. How those patterns are implemented is critical to establishing a reusable architecture. In addition, the separation of the technical and data architecture has proven critical to allowing for such product lines to be applied to multiple disciplines, where domain information models are developed and applied, rather than directly integrated into software. This presentation will focus on defining software architecture and product lines, the development of these capabilities at JPL, and the application to earth, planetary and biomedical domains. [1] C. Mattmann

  2. Software development predictors, error analysis, reliability models and software metric analysis

    NASA Technical Reports Server (NTRS)

    Basili, Victor

    1983-01-01

    The use of dynamic characteristics as predictors for software development was studied. It was found that there are some significant factors that could be useful as predictors. From a study on software errors and complexity, it was shown that meaningful results can be obtained which allow insight into software traits and the environment in which it is developed. Reliability models were studied. The research included the field of program testing because the validity of some reliability models depends on the answers to some unanswered questions about testing. In studying software metrics, data collected from seven software engineering laboratory (FORTRAN) projects were examined and three effort reporting accuracy checks were applied to demonstrate the need to validate a data base. Results are discussed.

  3. Software Engineering Research/Developer Collaborations in 2005

    NASA Technical Reports Server (NTRS)

    Pressburger, Tom

    2006-01-01

    In CY 2005, three collaborations between software engineering technology providers and NASA software development personnel deployed three software engineering technologies on NASA development projects (a different technology on each project). The main purposes were to benefit the projects, infuse the technologies if beneficial into NASA, and give feedback to the technology providers to improve the technologies. Each collaboration project produced a final report. Section 2 of this report summarizes each project, drawing from the final reports and communications with the software developers and technology providers. Section 3 indicates paths to further infusion of the technologies into NASA practice. Section 4 summarizes some technology transfer lessons learned. Also included is an acronym list.

  4. Development of Efficient Authoring Software for e-Learning Contents

    NASA Astrophysics Data System (ADS)

    Kozono, Kazutake; Teramoto, Akemi; Akiyama, Hidenori

    The contents creation in e-Learning system becomes an important problem. The contents of e-Learning should include figure and voice media for a high-level educational effect. However, the use of figure and voice complicates the operation of authoring software considerably. A new authoring software, which can build e-Learning contents efficiently, has been developed to solve this problem. This paper reports development results of the authoring software.

  5. Development of Distributed Computing Systems Software Design Methodologies.

    DTIC Science & Technology

    1982-11-05

    R12i 941 DEVELOPMENT OF DISTRIBUTED COMPUTING SYSTEMS SOFTWARE ± DESIGN METHODOLOGIES(U) NORTHWESTERN UNIV EVANSTON IL DEPT OF ELECTRICAL...GUIRWAU OF STANDARDS -16 5 A Ax u FINAL REPORT Development of Distributed Computing System Software Design Methodologies C)0 Stephen S. Yau September 22...of Distributed Computing Systems Software pt.22,, 80 -OJu1, 2 * Dsig Mehodloges PERFORMING ORG REPORT NUMBERDesign th ol ies" 7. AUTHOR() .. CONTRACT

  6. Felyx : A Free Open Software Solution for the Analysis of Large Earth Observation Datasets

    NASA Astrophysics Data System (ADS)

    Piolle, Jean-Francois; Shutler, Jamie; Poulter, David; Guidetti, Veronica; Donlon, Craig

    2014-05-01

    GHRSST project, by assembling large collections of earth observation data from various sources and agencies, has also raised the need for providing the user community with tools to inter-compare them, assess and monitor their quality. The ESA /Medspiration project, which implemented the first operating node of GHRSST system for Europe, also paved the way successfully towards such generic analytics tools by developing the High Resolution Diagnostic Dataset System (HR-DDS) and Satellite to In situ Multi-sensor Match-up Databases. Building on this heritage, ESA is now funding the development by IFREMER, PML and Pelamis of felyx, a web tool merging the two capabilities into a single software solution. It will consist in a free open software solution, written in python and javascript, whose aim is to provide Earth Observation data producers and users with an open-source, flexible and reusable tool to allow the quality and performance of data streams (satellite, in situ and model) to be easily monitored and studied. The primary concept of Felyx is to work as an extraction tool, subsetting source data over predefined target areas (which can be static or moving) : these data subsets, and associated metrics, can then be accessed by users or client applications either as raw files, automatic alerts and reports generated periodically, or through a flexible web interface enabling statistical analysis and visualization. Felyx presents itself as an open-source suite of tools, written in python and javascript, enabling : * subsetting large local or remote collections of Earth Observation data over predefined sites (geographical boxes) or moving targets (ship, buoy, hurricane), storing locally the extracted data (refered as miniProds). These miniProds constitute a much smaller representative subset of the original collection on which one can perform any kind of processing or assessment without having to cope with heavy volumes of data. * computing statistical metrics over these

  7. OpenSlide: A vendor-neutral software foundation for digital pathology

    PubMed Central

    Goode, Adam; Gilbert, Benjamin; Harkes, Jan; Jukic, Drazen; Satyanarayanan, Mahadev

    2013-01-01

    Although widely touted as a replacement for glass slides and microscopes in pathology, digital slides present major challenges in data storage, transmission, processing and interoperability. Since no universal data format is in widespread use for these images today, each vendor defines its own proprietary data formats, analysis tools, viewers and software libraries. This creates issues not only for pathologists, but also for interoperability. In this paper, we present the design and implementation of OpenSlide, a vendor-neutral C library for reading and manipulating digital slides of diverse vendor formats. The library is extensible and easily interfaced to various programming languages. An application written to the OpenSlide interface can transparently handle multiple vendor formats. OpenSlide is in use today by many academic and industrial organizations world-wide, including many research sites in the United States that are funded by the National Institutes of Health. PMID:24244884

  8. OpenSlide: A vendor-neutral software foundation for digital pathology.

    PubMed

    Goode, Adam; Gilbert, Benjamin; Harkes, Jan; Jukic, Drazen; Satyanarayanan, Mahadev

    2013-01-01

    Although widely touted as a replacement for glass slides and microscopes in pathology, digital slides present major challenges in data storage, transmission, processing and interoperability. Since no universal data format is in widespread use for these images today, each vendor defines its own proprietary data formats, analysis tools, viewers and software libraries. This creates issues not only for pathologists, but also for interoperability. In this paper, we present the design and implementation of OpenSlide, a vendor-neutral C library for reading and manipulating digital slides of diverse vendor formats. The library is extensible and easily interfaced to various programming languages. An application written to the OpenSlide interface can transparently handle multiple vendor formats. OpenSlide is in use today by many academic and industrial organizations world-wide, including many research sites in the United States that are funded by the National Institutes of Health.

  9. Lessons in modern digital field geology: Open source software, 3D techniques, and the new world of digital mapping

    NASA Astrophysics Data System (ADS)

    Pavlis, Terry; Hurtado, Jose; Langford, Richard; Serpa, Laura

    2014-05-01

    Although many geologists refuse to admit it, it is time to put paper-based geologic mapping into the historical archives and move to the full potential of digital mapping techniques. For our group, flat map digital geologic mapping is now a routine operation in both research and instruction. Several software options are available, and basic proficiency with the software can be learned in a few hours of instruction and practice. The first practical field GIS software, ArcPad, remains a viable, stable option on Windows-based systems. However, the vendor seems to be moving away from ArcPad in favor of mobile software solutions that are difficult to implement without GIS specialists. Thus, we have pursued a second software option based on the open source program QGIS. Our QGIS system uses the same shapefile-centric data structure as our ArcPad system, including similar pop-up data entry forms and generic graphics for easy data management in the field. The advantage of QGIS is that the same software runs on virtually all common platforms except iOS, although the Android version remains unstable as of this writing. A third software option we are experimenting with for flat map-based field work is Fieldmove, a derivative of the 3D-capable program Move developed by Midland Valley. Our initial experiments with Fieldmove are positive, particularly with the new, inexpensive (<300Euros) Windows tablets. However, the lack of flexibility in data structure makes for cumbersome workflows when trying to interface our existing shapefile-centric data structures to Move. Nonetheless, in spring 2014 we will experiment with full-3D immersion in the field using the full Move software package in combination with ground based LiDAR and photogrammetry. One new workflow suggested by our initial experiments is that field geologists should consider using photogrammetry software to capture 3D visualizations of key outcrops. This process is now straightforward in several software packages, and

  10. An assessment of space shuttle flight software development processes

    NASA Technical Reports Server (NTRS)

    1993-01-01

    In early 1991, the National Aeronautics and Space Administration's (NASA's) Office of Space Flight commissioned the Aeronautics and Space Engineering Board (ASEB) of the National Research Council (NRC) to investigate the adequacy of the current process by which NASA develops and verifies changes and updates to the Space Shuttle flight software. The Committee for Review of Oversight Mechanisms for Space Shuttle Flight Software Processes was convened in Jan. 1992 to accomplish the following tasks: (1) review the entire flight software development process from the initial requirements definition phase to final implementation, including object code build and final machine loading; (2) review and critique NASA's independent verification and validation process and mechanisms, including NASA's established software development and testing standards; (3) determine the acceptability and adequacy of the complete flight software development process, including the embedded validation and verification processes through comparison with (1) generally accepted industry practices, and (2) generally accepted Department of Defense and/or other government practices (comparing NASA's program with organizations and projects having similar volumes of software development, software maturity, complexity, criticality, lines of code, and national standards); (4) consider whether independent verification and validation should continue. An overview of the study, independent verification and validation of critical software, and the Space Shuttle flight software development process are addressed. Findings and recommendations are presented.

  11. Open source cardiology electronic health record development for DIGICARDIAC implementation

    NASA Astrophysics Data System (ADS)

    Dugarte, Nelson; Medina, Rubén.; Huiracocha, Lourdes; Rojas, Rubén.

    2015-12-01

    This article presents the development of a Cardiology Electronic Health Record (CEHR) system. Software consists of a structured algorithm designed under Health Level-7 (HL7) international standards. Novelty of the system is the integration of high resolution ECG (HRECG) signal acquisition and processing tools, patient information management tools and telecardiology tools. Acquisition tools are for management and control of the DIGICARDIAC electrocardiograph functions. Processing tools allow management of HRECG signal analysis searching for indicative patterns of cardiovascular pathologies. Telecardiology tools incorporation allows system communication with other health care centers decreasing access time to the patient information. CEHR system was completely developed using open source software. Preliminary results of process validation showed the system efficiency.

  12. Avionics Simulation, Development and Software Engineering

    NASA Technical Reports Server (NTRS)

    Francis, Ronald C.; Settle, Gray; Tobbe, Patrick A.; Kissel, Ralph; Glaese, John; Blanche, Jim; Wallace, L. D.

    2001-01-01

    This monthly report summarizes the work performed under contract NAS8-00114 for Marshall Space Flight Center in the following tasks: 1) Purchase Order No. H-32831D, Task Order 001A, GPB Program Software Oversight; 2) Purchase Order No. H-32832D, Task Order 002, ISS EXPRESS Racks Software Support; 3) Purchase Order No. H-32833D, Task Order 003, SSRMS Math Model Integration; 4) Purchase Order No. H-32834D, Task Order 004, GPB Program Hardware Oversight; 5) Purchase Order No. H-32835D, Task Order 005, Electrodynamic Tether Operations and Control Analysis; 6) Purchase Order No. H-32837D, Task Order 007, SRB Command Receiver/Decoder; and 7) Purchase Order No. H-32838D, Task Order 008, AVGS/DART SW and Simulation Support

  13. Simulation Modeling of Software Development Processes

    NASA Technical Reports Server (NTRS)

    Calavaro, G. F.; Basili, V. R.; Iazeolla, G.

    1996-01-01

    A simulation modeling approach is proposed for the prediction of software process productivity indices, such as cost and time-to-market, and the sensitivity analysis of such indices to changes in the organization parameters and user requirements. The approach uses a timed Petri Net and Object Oriented top-down model specification. Results demonstrate the model representativeness, and its usefulness in verifying process conformance to expectations, and in performing continuous process improvement and optimization.

  14. The development of automated behavior analysis software

    NASA Astrophysics Data System (ADS)

    Jaana, Yuki; Prima, Oky Dicky A.; Imabuchi, Takashi; Ito, Hisayoshi; Hosogoe, Kumiko

    2015-03-01

    The measurement of behavior for participants in a conversation scene involves verbal and nonverbal communications. The measurement validity may vary depending on the observers caused by some aspects such as human error, poorly designed measurement systems, and inadequate observer training. Although some systems have been introduced in previous studies to automatically measure the behaviors, these systems prevent participants to talk in a natural way. In this study, we propose a software application program to automatically analyze behaviors of the participants including utterances, facial expressions (happy or neutral), head nods, and poses using only a single omnidirectional camera. The camera is small enough to be embedded into a table to allow participants to have spontaneous conversation. The proposed software utilizes facial feature tracking based on constrained local model to observe the changes of the facial features captured by the camera, and the Japanese female facial expression database to recognize expressions. Our experiment results show that there are significant correlations between measurements observed by the observers and by the software.

  15. Software development environments: Present and future, appendix D

    NASA Technical Reports Server (NTRS)

    Riddle, W. E.

    1980-01-01

    Computerized environments which facilitate the development of appropriately functioning software systems are discussed. Their current status is reviewed and several trends exhibited by their history are identified. A number of principles, some at (slight) variance with the historical trends, are suggested and it is argued that observance of these principles is critical to achieving truly effective and efficient software development support environments.

  16. A Capstone Course on Agile Software Development Using Scrum

    ERIC Educational Resources Information Center

    Mahnic, V.

    2012-01-01

    In this paper, an undergraduate capstone course in software engineering is described that not only exposes students to agile software development, but also makes it possible to observe the behavior of developers using Scrum for the first time. The course requires students to work as Scrum Teams, responsible for the implementation of a set of user…

  17. Training Software Developers and Designers to Conduct Usability Evaluations

    ERIC Educational Resources Information Center

    Skov, Mikael Brasholt; Stage, Jan

    2012-01-01

    Many efforts to improve the interplay between usability evaluation and software development rely either on better methods for conducting usability evaluations or on better formats for presenting evaluation results in ways that are useful for software designers and developers. Both of these approaches depend on a complete division of work between…

  18. Product assurance policies and procedures for flight dynamics software development

    NASA Technical Reports Server (NTRS)

    Perry, Sandra; Jordan, Leon; Decker, William; Page, Gerald; Mcgarry, Frank E.; Valett, Jon

    1987-01-01

    The product assurance policies and procedures necessary to support flight dynamics software development projects for Goddard Space Flight Center are presented. The quality assurance and configuration management methods and tools for each phase of the software development life cycles are described, from requirements analysis through acceptance testing; maintenance and operation are not addressed.

  19. Software Development through ACOT Teachers' Eyes. ACOT Report #4.

    ERIC Educational Resources Information Center

    Knapp, Linda

    Eight Apple Classrooms of Tomorrow (ACOT) teachers met with software developers at the Florida Instructional Computing Conference in January 1989. During the session, the panel of ACOT teachers expressed their wants and wishes for educational software and developers responded with their own concerns. The face-to-face communication provided a…

  20. Towards an International Planetary Community Built on Open Source Software: the Evolution of the Planetary Data System

    NASA Astrophysics Data System (ADS)

    Crichton, D. J.; Ramirez, P.; Hardman, S.; Hughes, J. S.

    2012-12-01

    Access to the worldwide planetary science research results from robotic exploration of the solar system has become a key driver in internationalizing the data standards from the Planetary Data System. The Planetary Data System, through international agency collaborations with the International Planetary Data Alliance (IPDA), has been developing a next generation set of data standards and technical implementation known as PDS4. PDS4 modernizes the PDS towards a world-wide online data system providing data and technical standards for improving access and interoperability among planetary archives. Since 2006, the IPDA has been working with the PDS to ensure that the next generation PDS is capable of allowing agency autonomy in building compatible archives while providing mechanisms to link the archive together. At the 7th International Planetary Data Alliance (IPDA) Meeting in Bangalore, India, the IPDA discussed and passed a resolution paving the way to adopt the PDS4 data standards. While the PDS4 standards have matured, another effort has been underway to move the PDS, a set of distributed discipline oriented science nodes, into a fully, online, service-oriented architecture. In order to accomplish this goal, the PDS has been developing a core set of software components that form the basis for many of the functions needed by a data system. These include the ability to harvest, validate, register, search and distribute the data products defined by the PDS4 data standards. Rather than having each group build their own independent implementations, the intention is to ultimately govern the implementation of this software through an open source community. This will enable not only sharing of software among U.S. planetary science nodes, but also has the potential of improving collaboration not only on core data management software, but also the tools by the international community. This presentation will discuss the progress in developing an open source infrastructure

  1. PROTEINCHALLENGE: crowd sourcing in proteomics analysis and software development.

    PubMed

    Martin, Sarah F; Falkenberg, Heiner; Dyrlund, Thomas F; Khoudoli, Guennadi A; Mageean, Craig J; Linding, Rune

    2013-08-02

    In large-scale proteomics studies there is a temptation, after months of experimental work, to plug resulting data into a convenient-if poorly implemented-set of tools, which may neither do the data justice nor help answer the scientific question. In this paper we have captured key concerns, including arguments for community-wide open source software development and "big data" compatible solutions for the future. For the meantime, we have laid out ten top tips for data processing. With these at hand, a first large-scale proteomics analysis hopefully becomes less daunting to navigate. However there is clearly a real need for robust tools, standard operating procedures and general acceptance of best practises. Thus we submit to the proteomics community a call for a community-wide open set of proteomics analysis challenges--PROTEINCHALLENGE--that directly target and compare data analysis workflows, with the aim of setting a community-driven gold standard for data handling, reporting and sharing.

  2. A proven approach for more effective software development and maintenance

    NASA Technical Reports Server (NTRS)

    Pajerski, Rose; Hall, Dana; Sinclair, Craig

    1994-01-01

    Modern space flight mission operations and associated ground data systems are increasingly dependent upon reliable, quality software. Critical functions such as command load preparation, health and status monitoring, communications link scheduling and conflict resolution, and transparent gateway protocol conversion are routinely performed by software. Given budget constraints and the ever increasing capabilities of processor technology, the next generation of control centers and data systems will be even more dependent upon software across all aspects of performance. A key challenge now is to implement improved engineering, management, and assurance processes for the development and maintenance of that software; processes that cost less, yield higher quality products, and that self-correct for continual improvement evolution. The NASA Goddard Space Flight Center has a unique experience base that can be readily tapped to help solve the software challenge. Over the past eighteen years, the Software Engineering Laboratory within the code 500 Flight Dynamics Division has evolved a software development and maintenance methodology that accommodates the unique characteristics of an organization while optimizing and continually improving the organization's software capabilities. This methodology relies upon measurement, analysis, and feedback much analogous to that of control loop systems. It is an approach with a time-tested track record proven through repeated applications across a broad range of operational software development and maintenance projects. This paper describes the software improvement methodology employed by the Software Engineering Laboratory, and how it has been exploited within the Flight Dynamics Division with GSFC Code 500. Examples of specific improvement in the software itself and its processes are presented to illustrate the effectiveness of the methodology. Finally, the initial findings are given when this methodology was applied across the

  3. Analysis of Schedule Determination in Software Program Development and Software Development Estimation Models

    DTIC Science & Technology

    1988-09-01

    successfully analyze the software estimation models I chose for this thesis, I first had to have access to them. I am thankful to Professor Daniel V. Ferens for...the software are not properly specified and defined, accurate schedule determination will be difficult. Walt Scacchi , in his article "Managing Software...21. Ferens, Daniel V. An Introduction to Software Para ec ost ZtintIng, Wright-Patterson AFB ON: Aix Force Institute of Technology, 1987. 22. Funch

  4. Forecasting trends in NASA flight software development tools

    NASA Technical Reports Server (NTRS)

    Garman, J. R.

    1983-01-01

    The experience gained in the design and development of Shuttle flight and ground support embedded software systems along with projections of increasing role and size of software in the proposed Space Station and other future NASA projects provides the basis for forecasting substantial changes in the tools and methodologies by which embedded software systems are developed and acquired. Similar changes in software architectures and operator interfaces will lead to substantial changes in the approach and techniques involved in software test and system integration. Increasing commonality among different flight systems and between flight and supporting ground systems is projected, along with a more distributed approach to software acquisition in highly complex projects such as Space Station.

  5. Section 508 Electronic Information Accessibility Requirements for Software Development

    NASA Technical Reports Server (NTRS)

    Ellis, Rebecca

    2014-01-01

    Section 508 Subpart B 1194.21 outlines requirements for operating system and software development in order to create a product that is accessible to users with various disabilities. This portion of Section 508 contains a variety of standards to enable those using assistive technology and with visual, hearing, cognitive and motor difficulties to access all information provided in software. The focus on requirements was limited to the Microsoft Windows® operating system as it is the predominant operating system used at this center. Compliance with this portion of the requirements can be obtained by integrating the requirements into the software development cycle early and by remediating issues in legacy software if possible. There are certain circumstances with software that may arise necessitating an exemption from these requirements, such as design or engineering software using dynamically changing graphics or numbers to convey information. These exceptions can be discussed with the Section 508 Coordinator and another method of accommodation used.

  6. Open data in drug discovery and development: lessons from malaria.

    PubMed

    Wells, Timothy N C; Willis, Paul; Burrows, Jeremy N; Hooft van Huijsduijnen, Rob

    2016-10-01

    There is a growing consensus that drug discovery thrives in an open environment. Here, we describe how the malaria community has embraced four levels of open data - open science, open innovation, open access and open source - to catalyse the development of new medicines, and consider principles that could enable open data approaches to be applied to other disease areas.

  7. Architecture and Implementation of OpenPET Firmware and Embedded Software.

    PubMed

    Abu-Nimeh, Faisal T; Ito, Jennifer; Moses, William W; Peng, Qiyu; Choong, Woon-Seng

    2016-04-01

    OpenPET is an open source, modular, extendible, and high-performance platform suitable for multi-channel data acquisition and analysis. Due to the flexibility of the hardware, firmware, and software architectures, the platform is capable of interfacing with a wide variety of detector modules not only in medical imaging but also in homeland security applications. Analog signals from radiation detectors share similar characteristics - a pulse whose area is proportional to the deposited energy and whose leading edge is used to extract a timing signal. As a result, a generic design method of the platform is adopted for the hardware, firmware, and software architectures and implementations. The analog front-end is hosted on a module called a Detector Board, where each board can filter, combine, timestamp, and process multiple channels independently. The processed data is formatted and sent through a backplane bus to a module called Support Board, where 1 Support Board can host up to eight Detector Board modules. The data in the Support Board, coming from 8 Detector Board modules, can be aggregated or correlated (if needed) depending on the algorithm implemented or runtime mode selected. It is then sent out to a computer workstation for further processing. The number of channels (detector modules), to be processed, mandates the overall OpenPET System Configuration, which is designed to handle up to 1,024 channels using 16-channel Detector Boards in the Standard System Configuration and 16,384 channels using 32-channel Detector Boards in the Large System Configuration.

  8. NDE Software Developed at NASA Glenn Research Center

    NASA Technical Reports Server (NTRS)

    Roth, Donald J.; Martin, Richard E.; Rauser, Richard W.; Nichols, Charles; Bonacuse, Peter J.

    2014-01-01

    NASA Glenn Research Center has developed several important Nondestructive Evaluation (NDE) related software packages for different projects in the last 10 years. Three of the software packages have been created with commercial-grade user interfaces and are available to United States entities for download on the NASA Technology Transfer and Partnership Office server (https://sr.grc.nasa.gov/). This article provides brief overviews of the software packages.

  9. Architecture independent environment for developing engineering software on MIMD computers

    NASA Technical Reports Server (NTRS)

    Valimohamed, Karim A.; Lopez, L. A.

    1990-01-01

    Engineers are constantly faced with solving problems of increasing complexity and detail. Multiple Instruction stream Multiple Data stream (MIMD) computers have been developed to overcome the performance limitations of serial computers. The hardware architectures of MIMD computers vary considerably and are much more sophisticated than serial computers. Developing large scale software for a variety of MIMD computers is difficult and expensive. There is a need to provide tools that facilitate programming these machines. First, the issues that must be considered to develop those tools are examined. The two main areas of concern were architecture independence and data management. Architecture independent software facilitates software portability and improves the longevity and utility of the software product. It provides some form of insurance for the investment of time and effort that goes into developing the software. The management of data is a crucial aspect of solving large engineering problems. It must be considered in light of the new hardware organizations that are available. Second, the functional design and implementation of a software environment that facilitates developing architecture independent software for large engineering applications are described. The topics of discussion include: a description of the model that supports the development of architecture independent software; identifying and exploiting concurrency within the application program; data coherence; engineering data base and memory management.

  10. Laser scanner data processing and 3D modeling using a free and open source software

    SciTech Connect

    Gabriele, Fatuzzo; Michele, Mangiameli Giuseppe, Mussumeci; Salvatore, Zito

    2015-03-10

    The laser scanning is a technology that allows in a short time to run the relief geometric objects with a high level of detail and completeness, based on the signal emitted by the laser and the corresponding return signal. When the incident laser radiation hits the object to detect, then the radiation is reflected. The purpose is to build a three-dimensional digital model that allows to reconstruct the reality of the object and to conduct studies regarding the design, restoration and/or conservation. When the laser scanner is equipped with a digital camera, the result of the measurement process is a set of points in XYZ coordinates showing a high density and accuracy with radiometric and RGB tones. In this case, the set of measured points is called “point cloud” and allows the reconstruction of the Digital Surface Model. Even the post-processing is usually performed by closed source software, which is characterized by Copyright restricting the free use, free and open source software can increase the performance by far. Indeed, this latter can be freely used providing the possibility to display and even custom the source code. The experience started at the Faculty of Engineering in Catania is aimed at finding a valuable free and open source tool, MeshLab (Italian Software for data processing), to be compared with a reference closed source software for data processing, i.e. RapidForm. In this work, we compare the results obtained with MeshLab and Rapidform through the planning of the survey and the acquisition of the point cloud of a morphologically complex statue.

  11. Software Architecture for Simultaneous Process Control and Software Development/Modification

    SciTech Connect

    Lenarduzzi, Roberto; Hileman, Michael S; McMillan, David E; Holmes Jr, William; Blankenship, Mark; Wilder, Terry

    2011-01-01

    A software architecture is described that allows modification of some application code sections while the remainder of the application continues executing. This architecture facilitates long term testing and process control because the overall process need not be stopped and restarted to allow modifications or additions to the software. A working implementation using National Instruments LabVIEW{trademark} sub-panel and shared variable features is described as an example. This architecture provides several benefits in both the program development and execution environments. The software is easier to maintain and it is not necessary to recompile the entire program after a modification.

  12. 77 FR 50724 - Developing Software Life Cycle Processes for Digital Computer Software Used in Safety Systems of...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-08-22

    ... Specifications for Digital Computer Software and Complex Electronics used in Safety Systems of Nuclear Power... COMMISSION Developing Software Life Cycle Processes for Digital Computer Software Used in Safety Systems of... comment draft regulatory guide (DG), DG-1210, ``Developing Software Life Cycle Processes for...

  13. Software-Based Challenges of Developing the Future Distribution Grid

    SciTech Connect

    Stewart, Emma; Kiliccote, Sila; McParland, Charles

    2014-06-01

    The software that the utility industry currently uses may be insufficient to analyze the distribution grid as it rapidly modernizes to include active resources such as distributed generation, switch and voltage control, automation, and increasingly complex loads. Although planners and operators have traditionally viewed the distribution grid as a passive load, utilities and consultants increasingly need enhanced analysis that incorporates active distribution grid loads in order to ensure grid reliability. Numerous commercial and open-source tools are available for analyzing distribution grid systems. These tools vary in complexity from providing basic load-flow and capacity analysis under steady-state conditions to time-series analysis and even geographical representations of dynamic and transient events. The need for each type of analysis is not well understood in the industry, nor are the reasons that distribution analysis requires different techniques and tools both from those now available and from those used for transmission analysis. In addition, there is limited understanding of basic capability of the tools and how they should be practically applied to the evolving distribution system. The study reviews the features and state of the art capability of current tools, including usability and visualization, basic analysis functionality, advanced analysis including inverters, and renewable generation and load modeling. We also discuss the need for each type of distribution grid system analysis. In addition to reviewing basic functionality current models, we discuss dynamics and transient simulation in detail and draw conclusions about existing software?s ability to address the needs of the future distribution grid as well as the barriers to modernization of the distribution grid that are posed by the current state of software and model development. Among our conclusions are that accuracy, data transfer, and data processing abilities are key to future

  14. Open-source MFIX-DEM software for gas-solids flows: Part I verification studies

    SciTech Connect

    Garg, Rahul; Galvin, Janine; Li, Tingwen; Pannala, Sreekanth

    2012-01-01

    With rapid advancements in computer hardware, it is now possible to perform large simulations of granular flows using the Discrete Element Method (DEM). As a result, solids are increasingly treated in a discrete Lagrangian fashion in the gas solids flow community. In this paper, the open-source MFIX-DEM software is described that can be used for simulating the gas solids flow using an Eulerian reference frame for the continuum fluid and a Lagrangian discrete framework (Discrete Element Method) for the particles. This method is referred to as the continuum discrete method (CDM) to clearly make a distinction between the ambiguity of using a Lagrangian or Eulerian reference for either continuum or discrete formulations. This freely available CDM code for gas solids flows can accelerate the research in computational gas solids flows and establish a baseline that can lead to better closures for the continuum modeling (or traditionally referred to as two fluid model) of gas solids flows. In this paper, a series of verification cases is employed which tests the different aspects of the code in a systematic fashion by exploring specific physics in gas solids flows before exercising the fully coupled solution on simple canonical problems. It is critical to have an extensively verified code as the physics is complex with highly-nonlinear coupling, and it is difficult to ascertain the accuracy of the results without rigorous verification. These series of verification tests set the stage not only for rigorous validation studies (performed in part II of this paper) but also serve as a procedure for testing any new developments that couple continuum and discrete formulations for gas solids flows.

  15. Open-source MFIX-DEM software for gas-solids flows: Part 1 - Verification studies

    SciTech Connect

    Garg, Rahul; Galvin, Janine; Li, Tingwen; Pannala, Sreekanth

    2012-04-01

    With rapid advancements in computer hardware, it is now possible to perform large simulations of granular flows using the Discrete Element Method (DEM). As a result, solids are increasingly treated in a discrete Lagrangian fashion in the gas–solids flow community. In this paper, the open-source MFIX-DEM software is described that can be used for simulating the gas–solids flow using an Eulerian reference frame for the continuum fluid and a Lagrangian discrete framework (Discrete Element Method) for the particles. This method is referred to as the continuum discrete method (CDM) to clearly make a distinction between the ambiguity of using a Lagrangian or Eulerian reference for either continuum or discrete formulations. This freely available CDM code for gas–solids flows can accelerate the research in computational gas–solids flows and establish a baseline that can lead to better closures for the continuum modeling (or traditionally referred to as two fluid model) of gas–solids flows. In this paper, a series of verification cases is employed which tests the different aspects of the code in a systematic fashion by exploring specific physics in gas–solids flows before exercising the fully coupled solution on simple canonical problems. It is critical to have an extensively verified code as the physics is complex with highly-nonlinear coupling, and it is difficult to ascertain the accuracy of the results without rigorous verification. These series of verification tests set the stage not only for rigorous validation studies (performed in part II of this paper) but also serve as a procedure for testing any new developments that couple continuum and discrete formulations for gas–solids flows.

  16. Open Source MFIX-DEM Software for Gas-Solids Flows: Part 1 - Verification Studies

    SciTech Connect

    Garg, Rahul; Galvin, Janine; Li, Tingwen; Pannala, Sreekanth

    2012-04-01

    With rapid advancements in computer hardware, it is now possible to perform large simulations of granular flows using the Discrete Element Method (DEM). As a result, solids are increasingly treated in a discrete Lagrangian fashion in the gas–solids flow community. In this paper, the open-source MFIX-DEM software is described that can be used for simulating the gas–solids flow using an Eulerian reference frame for the continuum fluid and a Lagrangian discrete framework (Discrete Element Method) for the particles. This method is referred to as the continuum discrete method (CDM) to clearly make a distinction between the ambiguity of using a Lagrangian or Eulerian reference for either continuum or discrete formulations. This freely available CDM code for gas–solids flows can accelerate the research in computational gas–solids flows and establish a baseline that can lead to better closures for the continuum modeling (or traditionally referred to as two fluid model) of gas–solids flows. In this paper, a series of verification cases is employed which tests the different aspects of the code in a systematic fashion by exploring specific physics in gas–solids flows before exercising the fully coupled solution on simple canonical problems. It is critical to have an extensively verified code as the physics is complex with highly-nonlinear coupling, and it is difficult to ascertain the accuracy of the results without rigorous verification. These series of verification tests set the stage not only for rigorous validation studies (performed in part II of this paper) but also serve as a procedure for testing any new developments that couple continuum and discrete formulations for gas–solids flows.

  17. Stakeholder co-development of farm level nutrient management software

    NASA Astrophysics Data System (ADS)

    Buckley, Cathal; Mechan, Sarah; Macken-Walsh, Aine; Heanue, Kevin

    2013-04-01

    Over the last number of decades intensification in the use nitrogen (N) and phosphorus (P) in agricultural production has lead to excessive accumulations of these nutrients in soils, groundwaters and surface water bodies (Sutton et al., 2011). According to the European Environment Agency (2012) despite some progress diffuse pollution from agriculture is still significant in more than 40% of Europe's water bodies in rivers and coastal waters, and in one third of the water bodies in lakes and transitional waters. Recently it was estimated that approximately 29% of monitored river channel length is polluted to some degree across the Republic of Ireland. Agricultural sources were suspected in 47 per cent of cases (EPA, 2012). Farm level management practices to reduce nutrient transfers from agricultural land to watercourses can be divided into source reduction and source interception approaches (Ribaudo et al., 2001). Source interception approaches involve capturing nutrients post mobilisation through policy instruments such as riparian buffer zones or wetlands. Conversely, the source reduction approach is preventative in nature and promotes strict management of nutrient at farm and field level to reduce risk of mobilisation in the first instance. This has the potential to deliver a double dividend of reduced nutrient loss to the wider ecosystem while maximising economic return to agricultural production at the field and farm levels. Adoption and use of nutrient management plans among farmers is far from the norm. This research engages key farmer and extension stakeholders to explore how current nutrient management planning software and outputs should be developed to make it more user friendly and usable in a practical way. An open innovation technology co-development approach was adopted to investigate what is demanded by the end users - farm advisors and farmers. Open innovation is a knowledge management strategy that uses the input of stakeholders to improve

  18. Achieving Agility and Stability in Large-Scale Software Development

    DTIC Science & Technology

    2013-01-16

    question Which software development process are you currently using? 1. Agile software development (e.g., using Scrum , XP practices, test-driven... Scrum teams, product development teams, component teams, feature teams) spend almost all of their time fixing defects, and new capability...architectural runway provides the degree of architectural stability to support the next n iterations of development. In a Scrum project environment

  19. Achieving Agility and Stability in Large-Scale Software Development

    DTIC Science & Technology

    2013-01-16

    question Which software development process are you currently using? 1. Agile software development (e.g., using Scrum , XP practices, test-driven... Scrum teams, product development teams, component teams, feature teams) spend almost all of their time fixing defects, and new capability...architectural runway provides the degree of architectural stability to support the next n iterations of development. In a Scrum project environment, the

  20. Extrusion Process by Finite Volume Method Using OpenFoam Software

    SciTech Connect

    Matos Martins, Marcelo; Tonini Button, Sergio; Divo Bressan, Jose; Ivankovic, Alojz

    2011-01-17

    The computational codes are very important tools to solve engineering problems. In the analysis of metal forming process, such as extrusion, this is not different because the computational codes allow analyzing the process with reduced cost. Traditionally, the Finite Element Method is used to solve solid mechanic problems, however, the Finite Volume Method (FVM) have been gaining force in this field of applications. This paper presents the velocity field and friction coefficient variation results, obtained by numerical simulation using the OpenFoam Software and the FVM to solve an aluminum direct cold extrusion process.

  1. Improving the Software Development Process Using Testability Research

    NASA Technical Reports Server (NTRS)

    Voas, Jeffrey M.; Miller, Keith W.

    1991-01-01

    Software testability is the the tendency of code to reveal existing faults during random testing. This paper proposes to take software testability predictions into account throughout the development process. These predictions can be made from formal specifications, design documents, and the code itself. The insight provided by software testability is valuable during design, coding, testing, and quality assurance. We further believe that software testability analysis can play a crucial role in quantifying the likelihood that faults are not hiding after testing does not result in any failures for the current version.

  2. Open source software implementation of an integrated testing strategy for skin sensitization potency based on a Bayesian network.

    PubMed

    Pirone, Jason R; Smith, Marjolein; Kleinstreuer, Nicole C; Burns, Thomas A; Strickland, Judy; Dancik, Yuri; Morris, Richard; Rinckel, Lori A; Casey, Warren; Jaworska, Joanna S

    2014-01-01

    An open-source implementation of a previously published integrated testing strategy (ITS) for skin sensitization using a Bayesian network has been developed using R, a free and open-source statistical computing language. The ITS model provides probabilistic predictions of skin sensitization potency based on in silico and in vitro information as well as skin penetration characteristics from a published bioavailability model (Kasting et al., 2008). The structure of the Bayesian network was designed to be consistent with the adverse outcome pathway published by the OECD (Jaworska et al., 2011, 2013). In this paper, the previously published data set (Jaworska et al., 2013) is improved by two data corrections and a modified application of the Kasting model. The new data set implemented in the original commercial software package and the new R version produced consistent results. The data and a fully documented version of the code are publicly available (http://ntp.niehs.nih.gov/go/its).

  3. Novice and Experienced Instructional Software Developers: Effects on Materials Created with Instructional Software Templates

    ERIC Educational Resources Information Center

    Boot, Eddy W.; van Merrienboer, Jeroen J. G.; Veerman, Arja L.

    2007-01-01

    The development of instructional software is a complex process, posing high demands to the technical and didactical expertise of developers. Domain specialists rather than professional developers are often responsible for it, but authoring tools with pre-structured templates claim to compensate for this limited experience. This study compares…

  4. Standardized development of computer software. Part 1: Methods

    NASA Technical Reports Server (NTRS)

    Tausworthe, R. C.

    1976-01-01

    This work is a two-volume set on standards for modern software engineering methodology. This volume presents a tutorial and practical guide to the efficient development of reliable computer software, a unified and coordinated discipline for design, coding, testing, documentation, and project organization and management. The aim of the monograph is to provide formal disciplines for increasing the probability of securing software that is characterized by high degrees of initial correctness, readability, and maintainability, and to promote practices which aid in the consistent and orderly development of a total software system within schedule and budgetary constraints. These disciplines are set forth as a set of rules to be applied during software development to drastically reduce the time traditionally spent in debugging, to increase documentation quality, to foster understandability among those who must come in contact with it, and to facilitate operations and alterations of the program as requirements on the program environment change.

  5. Sustaining an Online, Shared Community Resource for Models, Robust Open source Software Tools and Data for Volcanology - the Vhub Experience

    NASA Astrophysics Data System (ADS)

    Patra, A. K.; Valentine, G. A.; Bursik, M. I.; Connor, C.; Connor, L.; Jones, M.; Simakov, N.; Aghakhani, H.; Jones-Ivey, R.; Kosar, T.; Zhang, B.

    2015-12-01

    Over the last 5 years we have created a community collaboratory Vhub.org [Palma et al, J. App. Volc. 3:2 doi:10.1186/2191-5040-3-2] as a place to find volcanology-related resources, and a venue for users to disseminate tools, teaching resources, data, and an online platform to support collaborative efforts. As the community (current active users > 6000 from an estimated community of comparable size) embeds the tools in the collaboratory into educational and research workflows it became imperative to: a) redesign tools into robust, open source reusable software for online and offline usage/enhancement; b) share large datasets with remote collaborators and other users seamlessly with security; c) support complex workflows for uncertainty analysis, validation and verification and data assimilation with large data. The focus on tool development/redevelopment has been twofold - firstly to use best practices in software engineering and new hardware like multi-core and graphic processing units. Secondly we wish to enhance capabilities to support inverse modeling, uncertainty quantification using large ensembles and design of experiments, calibration, validation. Among software engineering practices we practice are open source facilitating community contributions, modularity and reusability. Our initial targets are four popular tools on Vhub - TITAN2D, TEPHRA2, PUFF and LAVA. Use of tools like these requires many observation driven data sets e.g. digital elevation models of topography, satellite imagery, field observations on deposits etc. These data are often maintained in private repositories that are privately shared by "sneaker-net". As a partial solution to this we tested mechanisms using irods software for online sharing of private data with public metadata and access limits. Finally, we adapted use of workflow engines (e.g. Pegasus) to support the complex data and computing workflows needed for usage like uncertainty quantification for hazard analysis using physical

  6. Developing a Decision Support System: The Software and Hardware Tools.

    ERIC Educational Resources Information Center

    Clark, Phillip M.

    1989-01-01

    Describes some of the available software and hardware tools that can be used to develop a decision support system implemented on microcomputers. Activities that should be supported by software are discussed, including data entry, data coding, finding and combining data, and data compatibility. Hardware considerations include speed, storage…

  7. Development Of Software To Recognize Parts Of Plants

    NASA Technical Reports Server (NTRS)

    Despain, Ronald R.; Tharpe, Roy, Jr.; Davis, Leon; Hauss, Sharon; Shawaga, Larry; Biro, Ron

    1993-01-01

    Report describes first phase in development of digital image-processing subsystem recognizing parts of plants. Subsystem part of robotic system tending and harvesting plants in automated plant-growth chamber. Initial focus on image-processing software that distinguishes among seed heads, stems, and leaves of wheat plants and further distinguishes between these parts and background. Software adaptable to other types of plants.

  8. Comparison of 3D reconstruction of mandible for pre-operative planning using commercial and open-source software

    NASA Astrophysics Data System (ADS)

    Abdullah, Johari Yap; Omar, Marzuki; Pritam, Helmi Mohd Hadi; Husein, Adam; Rajion, Zainul Ahmad

    2016-12-01

    3D printing of mandible is important for pre-operative planning, diagnostic purposes, as well as for education and training. Currently, the processing of CT data is routinely performed with commercial software which increases the cost of operation and patient management for a small clinical setting. Usage of open-source software as an alternative to commercial software for 3D reconstruction of the mandible from CT data is scarce. The aim of this study is to compare two methods of 3D reconstruction of the mandible using commercial Materialise Mimics software and open-source Medical Imaging Interaction Toolkit (MITK) software. Head CT images with a slice thickness of 1 mm and a matrix of 512x512 pixels each were retrieved from the server located at the Radiology Department of Hospital Universiti Sains Malaysia. The CT data were analysed and the 3D models of mandible were reconstructed using both commercial Materialise Mimics and open-source MITK software. Both virtual 3D models were saved in STL format and exported to 3matic and MeshLab software for morphometric and image analyses. Both models were compared using Wilcoxon Signed Rank Test and Hausdorff Distance. No significant differences were obtained between the 3D models of the mandible produced using Mimics and MITK software. The 3D model of the mandible produced using MITK open-source software is comparable to the commercial MIMICS software. Therefore, open-source software could be used in clinical setting for pre-operative planning to minimise the operational cost.

  9. Development of software fault-tolerance techniques

    NASA Technical Reports Server (NTRS)

    Melliar-Smith, P. M.

    1983-01-01

    As computers become more widely used, and in particular as they become used in more safety critical applications, the reliability of the computer system and its software becomes more important. There is also an increasing need for high levels of reliability in applications involving very large numbers of inexpensive units where recall of the units would be disproportionately expensive. The nature of faults and the assumptions made by different approaches to correct operation are considered. The recovery block approach is described and a probabilistic analysis of its effectiveness, with and without correlated design errors is provided. Mechanisms for generating acceptance tests from specifications, and for providing recovery in the presence of asynchrony, are described. An analysis of, and design for, the provision of recovery blocks in the microprogram of the Bendix BDX930 processor is provided. An example of the use of recovery blocks in a simple operating system is also provided.

  10. UNESCO's HOPE Initiative—Providing Free and Open-Source Hydrologic Software for Effective and Sustainable Management of Africa's Water Resources Temporary Title

    NASA Astrophysics Data System (ADS)

    Barlow, P. M.; Filali-Meknassi, Y.; Sanford, W. E.; Winston, R. B.; Kuniansky, E.; Dawson, C.

    2015-12-01

    UNESCO's HOPE Initiative—the Hydro Free and (or) Open-source Platform of Experts—was launched in June 2013 as part of UNESCO's International Hydrological Programme. The Initiative arose in response to a recognized need to make free and (or) open-source water-resources software more widely accessible to Africa's water sector. A kit of software is being developed to provide African water authorities, teachers, university lecturers, and researchers with a set of programs that can be enhanced and (or) applied to the development of efficient and sustainable management strategies for Africa's water resources. The Initiative brings together experts from the many fields of water resources to identify software that might be included in the kit, to oversee an objective process for selecting software for the kit, and to engage in training and other modes of capacity building to enhance dissemination of the software. To date, teams of experts from the fields of wastewater treatment, groundwater hydrology, surface-water hydrology, and data management have been formed to identify relevant software from their respective fields. An initial version of the HOPE Software Kit was released in late August 2014 and consists of the STOAT model for wastewater treatment developed by the Water Research Center (United Kingdom) and the MODFLOW-2005 model for groundwater-flow simulation developed by the U.S. Geological Survey. The Kit is available on the UNESCO HOPE website (http://www.hope-initiative.net/).Training in the theory and use of MODFLOW-2005 is planned in southern Africa in conjunction with UNESCO's study of the Kalahari-Karoo/Stampriet Transboundary Aquifer, which extends over an area that includes parts of Botswana, Namibia, and South Africa, and in support of the European Commission's Horizon 2020 FREEWAT project (FREE and open source software tools for WATer resource management; see the UNESCO HOPE website).

  11. The Role of Organizational Sub-Cultures in Higher Education Adoption of Open Source Software (OSS) for Teaching/Learning

    ERIC Educational Resources Information Center

    Williams van Rooij, Shahron

    2010-01-01

    This paper contrasts the arguments offered in the literature advocating the adoption of open source software (OSS)--software delivered with its source code--for teaching and learning applications, with the reality of limited enterprise-wide deployment of those applications in U.S. higher education. Drawing on the fields of organizational…

  12. Estimating Software-Development Costs With Greater Accuracy

    NASA Technical Reports Server (NTRS)

    Baker, Dan; Hihn, Jairus; Lum, Karen

    2008-01-01

    COCOMOST is a computer program for use in estimating software development costs. The goal in the development of COCOMOST was to increase estimation accuracy in three ways: (1) develop a set of sensitivity software tools that return not only estimates of costs but also the estimation error; (2) using the sensitivity software tools, precisely define the quantities of data needed to adequately tune cost estimation models; and (3) build a repository of software-cost-estimation information that NASA managers can retrieve to improve the estimates of costs of developing software for their project. COCOMOST implements a methodology, called '2cee', in which a unique combination of well-known pre-existing data-mining and software-development- effort-estimation techniques are used to increase the accuracy of estimates. COCOMOST utilizes multiple models to analyze historical data pertaining to software-development projects and performs an exhaustive data-mining search over the space of model parameters to improve the performances of effort-estimation models. Thus, it is possible to both calibrate and generate estimates at the same time. COCOMOST is written in the C language for execution in the UNIX operating system.

  13. Lean and Agile Development of the AITS Ground Software System

    NASA Astrophysics Data System (ADS)

    Richters, Mark; Dutruel, Etienne; Mecredy, Nicolas

    2013-08-01

    We present the ongoing development of a new ground software system used for integrating, testing and operating spacecraft. The Advanced Integration and Test Services (AITS) project aims at providing a solution for electrical ground support equipment and mission control systems in future Astrium Space Transportation missions. Traditionally ESA ground or flight software development projects are conducted according to a waterfall-like process as specified in the ECSS-E-40 standard promoted by ESA in the European industry. In AITS a decision was taken to adopt an agile development process. This work could serve as a reference for future ESA software projects willing to apply agile concepts.

  14. Pragmatic quality metrics for evolutionary software development models

    NASA Technical Reports Server (NTRS)

    Royce, Walker

    1990-01-01

    Due to the large number of product, project, and people parameters which impact large custom software development efforts, measurement of software product quality is a complex undertaking. Furthermore, the absolute perspective from which quality is measured (customer satisfaction) is intangible. While we probably can't say what the absolute quality of a software product is, we can determine the relative quality, the adequacy of this quality with respect to pragmatic considerations, and identify good and bad trends during development. While no two software engineers will ever agree on an optimum definition of software quality, they will agree that the most important perspective of software quality is its ease of change. We can call this flexibility, adaptability, or some other vague term, but the critical characteristic of software is that it is soft. The easier the product is to modify, the easier it is to achieve any other software quality perspective. This paper presents objective quality metrics derived from consistent lifecycle perspectives of rework which, when used in concert with an evolutionary development approach, can provide useful insight to produce better quality per unit cost/schedule or to achieve adequate quality more efficiently. The usefulness of these metrics is evaluated by applying them to a large, real world, Ada project.

  15. Ideas for a Cooperative Software Development for Future GGOS Stations

    NASA Astrophysics Data System (ADS)

    Neidhardt, A.; Ettl, M.

    2012-12-01

    The development of software is a creative process, which offers a huge degree of freedom. In scientific fields a lot of researchers develop their own software for specific needs. Everyone has their own preferences and backgrounds regarding the used programming languages, styles, and platforms. This complexity results in software which is not always directly usable by others in the communities. In addition, the software is often error-prone as hidden bugs are not always revealed. Therefore ideas came up to solve these problems at the Geodetic Observatory Wettzell. The results were coding layouts and policies, documentation strategies, the usage of version control, and a consistent process of continuous integration. Within this, the discussed quality factors can define quality metrics which help to quantize code quality. The resulting software is a repository of tested modules that can be used in different programs for the geodetic space techniques. This is one possible contribution to future GGOS stations.

  16. COSTMODL: An automated software development cost estimation tool

    NASA Technical Reports Server (NTRS)

    Roush, George B.

    1991-01-01

    The cost of developing computer software continues to consume an increasing portion of many organizations' total budgets, both in the public and private sector. As this trend develops, the capability to produce reliable estimates of the effort and schedule required to develop a candidate software product takes on increasing importance. The COSTMODL program was developed to provide an in-house capability to perform development cost estimates for NASA software projects. COSTMODL is an automated software development cost estimation tool which incorporates five cost estimation algorithms including the latest models for the Ada language and incrementally developed products. The principal characteristic which sets COSTMODL apart from other software cost estimation programs is its capacity to be completely customized to a particular environment. The estimation equations can be recalibrated to reflect the programmer productivity characteristics demonstrated by the user's organization, and the set of significant factors which effect software development costs can be customized to reflect any unique properties of the user's development environment. Careful use of a capability such as COSTMODL can significantly reduce the risk of cost overruns and failed projects.

  17. Social.Water--Open Source Citizen Science Software for CrowdHydrology

    NASA Astrophysics Data System (ADS)

    Fienen, M. N.; Lowry, C.

    2013-12-01

    CrowdHydrology is a crowd-sourced citizen science project in which passersby near streams are encouraged to read a gage and send an SMS (text) message with the water level to a number indicated on a sign. The project was initially started using free services such as Google Voice, Gmail, and Google Maps to acquire and present the data on the internet. Social.Water is open-source software, using Python and JavaScript, that automates the acquisition, categorization, and presentation of the data. Open-source objectives pervade both the project and the software as the code is hosted at Github, only free scripting codes are used, and any person or organization can install a gage and join the CrowdHydrology network. In the first year, 10 sites were deployed in upstate New York, USA. In the second year, expansion to 44 sites throughout the upper Midwest USA was achieved. Comparison with official USGS and academic measurements have shown low error rates. Citizen participation varies greatly from site to site, so surveys or other social information is sought for insight into why some sites experience higher rates of participation than others.

  18. HashDist: Reproducible, Relocatable, Customizable, Cross-Platform Software Stacks for Open Hydrological Science

    NASA Astrophysics Data System (ADS)

    Ahmadia, A. J.; Kees, C. E.

    2014-12-01

    Developing scientific software is a continuous balance between not reinventing the wheel and getting fragile codes to interoperate with one another. Binary software distributions such as Anaconda provide a robust starting point for many scientific software packages, but this solution alone is insufficient for many scientific software developers. HashDist provides a critical component of the development workflow, enabling highly customizable, source-driven, and reproducible builds for scientific software stacks, available from both the IPython Notebook and the command line. To address these issues, the Coastal and Hydraulics Laboratory at the US Army Engineer Research and Development Center has funded the development of HashDist in collaboration with Simula Research Laboratories and the University of Texas at Austin. HashDist is motivated by a functional approach to package build management, and features intelligent caching of sources and builds, parametrized build specifications, and the ability to interoperate with system compilers and packages. HashDist enables the easy specification of "software stacks", which allow both the novice user to install a default environment and the advanced user to configure every aspect of their build in a modular fashion. As an advanced feature, HashDist builds can be made relocatable, allowing the easy redistribution of binaries on all three major operating systems as well as cloud, and supercomputing platforms. As a final benefit, all HashDist builds are reproducible, with a build hash specifying exactly how each component of the software stack was installed. This talk discusses the role of HashDist in the hydrological sciences, including its use by the Coastal and Hydraulics Laboratory in the development and deployment of the Proteus Toolkit as well as the Rapid Operational Access and Maneuver Support project. We demonstrate HashDist in action, and show how it can effectively support development, deployment, teaching, and

  19. Dynamic online surveys and experiments with the free open-source software dynQuest.

    PubMed

    Rademacher, Jens D M; Lippke, Sonia

    2007-08-01

    With computers and the World Wide Web widely available, collecting data through Web browsers is an attractive method utilized by the social sciences. In this article, conducting PC- and Web-based trials with the software package dynQuest is described. The software manages dynamic questionnaire-based trials over the Internet or on single computers, possibly as randomized control trials (RCT), if two or more groups are involved. The choice of follow-up questions can depend on previous responses, as needed for matched interventions. Data are collected in a simple text-based database that can be imported easily into other programs for postprocessing and statistical analysis. The software consists of platform-independent scripts written in the programming language PERL that use the common gateway interface between Web browser and server for submission of data through HTML forms. Advantages of dynQuest are parsimony, simplicity in use and installation, transparency, and reliability. The program is available as open-source freeware from the authors.

  20. Development of a common software interface

    SciTech Connect

    Davis, B.; Parrett, J.

    1997-06-16

    The variety of applications, databases, and information technologies makes it difficult to locate and retrieve information or applications that are otherwise openly available. The promise of the World Wide Web was that it was a paradigm for organizing and distributing information. Under this project, we looked at how we could more tightly couple the Web with the UNIX operating system for exchanging information, connecting programs and data, and facilitating collaboration between people in a more natural way. Ease of secure access and the ability to have electronic dialogues on specific questions will become increasingly important as the pressure Increases for scientists and analysts to rapidly access diverse information to make informed judgments and initiate new lines of Investigation.

  1. Utilizing Free and Open Source Software to access, view and compare in situ observations, EO products and model output data

    NASA Astrophysics Data System (ADS)

    Vines, Aleksander; Hamre, Torill; Lygre, Kjetil

    2014-05-01

    already existing code and functionalities on our software for free: Of course most the software did not have to be open source for this, but in some cases we had to do minor modifications to make the different technologies work together. We could extract the parts of the code that we needed for a specific task. One example of this was to use part of the code from ncWMS and Thredds to help our main application to both read netCDF files and present them in the browser. This presentation will focus on both difficulties we had with and advantages we got from developing this tool with FOSS.

  2. The development process for the space shuttle primary avionics software system

    NASA Technical Reports Server (NTRS)

    Keller, T. W.

    1987-01-01

    Primary avionics software system; software development approach; user support and problem diagnosis; software releases and configuration; quality/productivity programs; and software development/production facilities are addressed. Also examined are the external evaluations of the IBM process.

  3. Open Source Molecular Modeling

    PubMed Central

    Pirhadi, Somayeh; Sunseri, Jocelyn; Koes, David Ryan

    2016-01-01

    The success of molecular modeling and computational chemistry efforts are, by definition, dependent on quality software applications. Open source software development provides many advantages to users of modeling applications, not the least of which is that the software is free and completely extendable. In this review we categorize, enumerate, and describe available open source software packages for molecular modeling and computational chemistry. PMID:27631126

  4. Open Data, Open Specifications and Free and Open Source Software: A powerful mix to create distributed Web-based water information systems

    NASA Astrophysics Data System (ADS)

    Arias, Carolina; Brovelli, Maria Antonia; Moreno, Rafael

    2015-04-01

    We are in an age when water resources are increasingly scarce and the impacts of human activities on them are ubiquitous. These problems don't respect administrative or political boundaries and they must be addressed integrating information from multiple sources at multiple spatial and temporal scales. Communication, coordination and data sharing are critical for addressing the water conservation and management issues of the 21st century. However, different countries, provinces, local authorities and agencies dealing with water resources have diverse organizational, socio-cultural, economic, environmental and information technology (IT) contexts that raise challenges to the creation of information systems capable of integrating and distributing information across their areas of responsibility in an efficient and timely manner. Tight and disparate financial resources, and dissimilar IT infrastructures (data, hardware, software and personnel expertise) further complicate the creation of these systems. There is a pressing need for distributed interoperable water information systems that are user friendly, easily accessible and capable of managing and sharing large volumes of spatial and non-spatial data. In a distributed system, data and processes are created and maintained in different locations each with competitive advantages to carry out specific activities. Open Data (data that can be freely distributed) is available in the water domain, and it should be further promoted across countries and organizations. Compliance with Open Specifications for data collection, storage and distribution is the first step toward the creation of systems that are capable of interacting and exchanging data in a seamlessly (interoperable) way. The features of Free and Open Source Software (FOSS) offer low access cost that facilitate scalability and long-term viability of information systems. The World Wide Web (the Web) will be the platform of choice to deploy and access these systems

  5. The Beagle 2 entry descent and landing system (EDLS) software - development and re-use of software for the Red Planet

    NASA Astrophysics Data System (ADS)

    Symonds, Martin

    2002-07-01

    This paper provides a brief introduction to the Beagle 2 Mars probe and the associated mission, followed by a description of Logica's software responsibility on this programme. The approach taken during software development and implementation of the missioncritical entry, descent and landing system software is then described. This has focussed on maximising re-use of expertise from similar programmes such as Huygens and Rosetta. At the same time effort was devoted to ensure that re-use was enabled within the programme as well as opening up the possibility for re-use on subsequent missions. Finally, the lessons learned are highlighted and a number of conclusions are drawn.

  6. X-ray enhancement software development and test

    NASA Technical Reports Server (NTRS)

    Butterfield, R. L.; Dillon, C. L.

    1978-01-01

    A repertoire of software to optimally analyze various X-ray imagery was successfully developed. Computer techniques are presented to solve many common problems involved in nondestructive testing X-ray analysis.

  7. Perspectives on NASA flight software development - Apollo, Shuttle, Space Station

    NASA Technical Reports Server (NTRS)

    Garman, John R.

    1990-01-01

    Flight data systems' software development is chronicled for the period encompassing NASA's Apollo, Space Shuttle, and (ongoing) Space Station Freedom programs, with attention to the methodologies and 'development tools' employed in each case and their mutual relationships. A dominant concern in all three programs has been the accommodation of software change; it has also been noted that any such long-term program carries the additional challenge of identifying which elements of its software-related 'institutional memory' are most critical, in order to preclude their loss through the retirement, promotion, or transfer of its 'last expert'.

  8. Architecture and Implementation of OpenPET Firmware and Embedded Software

    PubMed Central

    Abu-Nimeh, Faisal T.; Ito, Jennifer; Moses, William W.; Peng, Qiyu; Choong, Woon-Seng

    2016-01-01

    OpenPET is an open source, modular, extendible, and high-performance platform suitable for multi-channel data acquisition and analysis. Due to the flexibility of the hardware, firmware, and software architectures, the platform is capable of interfacing with a wide variety of detector modules not only in medical imaging but also in homeland security applications. Analog signals from radiation detectors share similar characteristics – a pulse whose area is proportional to the deposited energy and whose leading edge is used to extract a timing signal. As a result, a generic design method of the platform is adopted for the hardware, firmware, and software architectures and implementations. The analog front-end is hosted on a module called a Detector Board, where each board can filter, combine, timestamp, and process multiple channels independently. The processed data is formatted and sent through a backplane bus to a module called Support Board, where 1 Support Board can host up to eight Detector Board modules. The data in the Support Board, coming from 8 Detector Board modules, can be aggregated or correlated (if needed) depending on the algorithm implemented or runtime mode selected. It is then sent out to a computer workstation for further processing. The number of channels (detector modules), to be processed, mandates the overall OpenPET System Configuration, which is designed to handle up to 1,024 channels using 16-channel Detector Boards in the Standard System Configuration and 16,384 channels using 32-channel Detector Boards in the Large System Configuration. PMID:27110034

  9. Adopting Open-Source Software Applications in U. S. Higher Education: A Cross-Disciplinary Review of the Literature

    ERIC Educational Resources Information Center

    van Rooij, Shahron Williams

    2009-01-01

    Higher Education institutions in the United States are considering Open Source software applications such as the Moodle and Sakai course management systems and the Kuali financial system to build integrated learning environments that serve both academic and administrative needs. Open Source is presumed to be more flexible and less costly than…

  10. Agile Software Development in Defense Acquisition: A Mission Assurance Perspective

    DTIC Science & Technology

    2012-03-23

    AEROSPACE REPORT NO ATR -2012(9010)-2 Agile Software Development in Defense Acquisition - A Mission Assurance Perspective March 23, 2012 Peter...release; distribution unlimited. aoUc£23>o;r7 AEROSPACE REPORT NO ATR -2012(9010)-2 Agile Software Development in Defense Acquisition - A Mission...Engineering and Technology Group Approved for public release; distribution unlimited. (A\\ AEROSPACE ^•^ Aautoff $m MK*I? taH AEROSPACE REPORT NO ATR

  11. Spacelab software development and integration concepts study report, volume 1

    NASA Technical Reports Server (NTRS)

    Rose, P. L.; Willis, B. G.

    1973-01-01

    The proposed software guidelines to be followed by the European Space Research Organization in the development of software for the Spacelab being developed for use as a payload for the space shuttle are documented. Concepts, techniques, and tools needed to assure the success of a programming project are defined as they relate to operation of the data management subsystem, support of experiments and space applications, use with ground support equipment, and for integration testing.

  12. The SCEC Broadband Platform: A Collaborative Open-Source Software Package for Strong Ground Motion Simulation and Validation

    NASA Astrophysics Data System (ADS)

    Silva, F.; Maechling, P. J.; Goulet, C.; Somerville, P.; Jordan, T. H.

    2013-12-01

    The Southern California Earthquake Center (SCEC) Broadband Platform is a collaborative software development project involving SCEC researchers, graduate students, and the SCEC Community Modeling Environment. The SCEC Broadband Platform is open-source scientific software that can generate broadband (0-100Hz) ground motions for earthquakes, integrating complex scientific modules that implement rupture generation, low and high-frequency seismogram synthesis, non-linear site effects calculation, and visualization into a software system that supports easy on-demand computation of seismograms. The Broadband Platform operates in two primary modes: validation simulations and scenario simulations. In validation mode, the Broadband Platform runs earthquake rupture and wave propagation modeling software to calculate seismograms of a historical earthquake for which observed strong ground motion data is available. Also in validation mode, the Broadband Platform calculates a number of goodness of fit measurements that quantify how well the model-based broadband seismograms match the observed seismograms for a certain event. Based on these results, the Platform can be used to tune and validate different numerical modeling techniques. During the past year, we have modified the software to enable the addition of a large number of historical events, and we are now adding validation simulation inputs and observational data for 23 historical events covering the Eastern and Western United States, Japan, Taiwan, Turkey, and Italy. In scenario mode, the Broadband Platform can run simulations for hypothetical (scenario) earthquakes. In this mode, users input an earthquake description, a list of station names and locations, and a 1D velocity model for their region of interest, and the Broadband Platform software then calculates ground motions for the specified stations. By establishing an interface between scientific modules with a common set of input and output files, the Broadband

  13. Development and application of new quality model for software projects.

    PubMed

    Karnavel, K; Dillibabu, R

    2014-01-01

    The IT industry tries to employ a number of models to identify the defects in the construction of software projects. In this paper, we present COQUALMO and its limitations and aim to increase the quality without increasing the cost and time. The computation time, cost, and effort to predict the residual defects are very high; this was overcome by developing an appropriate new quality model named the software testing defect corrective model (STDCM). The STDCM was used to estimate the number of remaining residual defects in the software product; a few assumptions and the detailed steps of the STDCM are highlighted. The application of the STDCM is explored in software projects. The implementation of the model is validated using statistical inference, which shows there is a significant improvement in the quality of the software projects.

  14. Development and Application of New Quality Model for Software Projects

    PubMed Central

    Karnavel, K.; Dillibabu, R.

    2014-01-01

    The IT industry tries to employ a number of models to identify the defects in the construction of software projects. In this paper, we present COQUALMO and its limitations and aim to increase the quality without increasing the cost and time. The computation time, cost, and effort to predict the residual defects are very high; this was overcome by developing an appropriate new quality model named the software testing defect corrective model (STDCM). The STDCM was used to estimate the number of remaining residual defects in the software product; a few assumptions and the detailed steps of the STDCM are highlighted. The application of the STDCM is explored in software projects. The implementation of the model is validated using statistical inference, which shows there is a significant improvement in the quality of the software projects. PMID:25478594

  15. Software development for a switch-based data acquisition system

    SciTech Connect

    Booth, A.; Black, D.; Walsh, D.

    1991-12-01

    We report on the software aspects of the development of a switch-based data acquisition system at Fermilab. This paper describes how, with the goal of providing an ``integrated systems engineering`` environment, several powerful software tools were put in place to facilitate extensive exploration of all aspects of the design. These tools include a simulation package, graphics package and an Expert System shell which have been integrated to provide an environment which encourages the close interaction of hardware and software engineers. This paper includes a description of the simulation, user interface, embedded software, remote procedure calls, and diagnostic software which together have enabled us to provide real-time control and monitoring of a working prototype switch-based data acquisition (DAQ) system.

  16. Software development for a switch-based data acquisition system

    SciTech Connect

    Booth, A. ); Black, D.; Walsh, D. )

    1991-12-01

    We report on the software aspects of the development of a switch-based data acquisition system at Fermilab. This paper describes how, with the goal of providing an integrated systems engineering'' environment, several powerful software tools were put in place to facilitate extensive exploration of all aspects of the design. These tools include a simulation package, graphics package and an Expert System shell which have been integrated to provide an environment which encourages the close interaction of hardware and software engineers. This paper includes a description of the simulation, user interface, embedded software, remote procedure calls, and diagnostic software which together have enabled us to provide real-time control and monitoring of a working prototype switch-based data acquisition (DAQ) system.

  17. TWiki as a platform for collaborative software development management

    NASA Astrophysics Data System (ADS)

    Radziwill, Nicole M.; Shelton, Amy L.

    2004-09-01

    The software development process in Green Bank is managed in six-week development cycles, where two cycles fall within one quarter. Each cycle, a Plan of Record is devised which outlines the team's commitments, deliverables, technical leads and scientific sponsors. To be productive and efficient, the team must not only be able to track its progress towards meeting commitments, but also to communicate and circulate the information that will help it meet its goals effectively. In the early summer of 2003, the Software Development Division installed a wiki web site using the TWiki product to improve the effectiveness of the team. Wiki sites contain web pages that are maintainable using a web interface by anyone who becomes a registered user of the site. Because the site naturally supports group involvement, the Plan of Record on the wiki now serves as the central dashboard for project tracking each development cycle. As an example of how the wiki improves productivity, software documentation is now tracked as evidence of the software deliverable. Written status reports are thus not required when the Plan of Record and associated wiki pages are kept up to date. The wiki approach has been quite successful in Green Bank for document management as well as software development management, and has rapidly extended beyond the bounds of the software development group for information management.

  18. SCT: Spinal Cord Toolbox, an open-source software for processing spinal cord MRI data.

    PubMed

    De Leener, Benjamin; Lévy, Simon; Dupont, Sara M; Fonov, Vladimir S; Stikov, Nikola; Louis Collins, D; Callot, Virginie; Cohen-Adad, Julien

    2017-01-15

    For the past 25 years, the field of neuroimaging has witnessed the development of several software packages for processing multi-parametric magnetic resonance imaging (mpMRI) to study the brain. These software packages are now routinely used by researchers and clinicians, and have contributed to important breakthroughs for the understanding of brain anatomy and function. However, no software package exists to process mpMRI data of the spinal cord. Despite the numerous clinical needs for such advanced mpMRI protocols (multiple sclerosis, spinal cord injury, cervical spondylotic myelopathy, etc.), researchers have been developing specific tools that, while necessary, do not provide an integrative framework that is compatible with most usages and that is capable of reaching the community at large. This hinders cross-validation and the possibility to perform multi-center studies. In this study we introduce the Spinal Cord Toolbox (SCT), a comprehensive software dedicated to the processing of spinal cord MRI data. SCT builds on previously-validated methods and includes state-of-the-art MRI templates and atlases of the spinal cord, algorithms to segment and register new data to the templates, and motion correction methods for diffusion and functional time series. SCT is tailored towards standardization and automation of the processing pipeline, versatility, modularity, and it follows guidelines of software development and distribution. Preliminary applications of SCT cover a variety of studies, from cross-sectional area measures in large databases of patients, to the precise quantification of mpMRI metrics in specific spinal pathways. We anticipate that SCT will bring together the spinal cord neuroimaging community by establishing standard templates and analysis procedures.

  19. Recent developments in the ABINIT software package

    NASA Astrophysics Data System (ADS)

    Gonze, X.; Jollet, F.; Abreu Araujo, F.; Adams, D.; Amadon, B.; Applencourt, T.; Audouze, C.; Beuken, J.-M.; Bieder, J.; Bokhanchuk, A.; Bousquet, E.; Bruneval, F.; Caliste, D.; Côté, M.; Dahm, F.; Da Pieve, F.; Delaveau, M.; Di Gennaro, M.; Dorado, B.; Espejo, C.; Geneste, G.; Genovese, L.; Gerossier, A.; Giantomassi, M.; Gillet, Y.; Hamann, D. R.; He, L.; Jomard, G.; Laflamme Janssen, J.; Le Roux, S.; Levitt, A.; Lherbier, A.; Liu, F.; Lukačević, I.; Martin, A.; Martins, C.; Oliveira, M. J. T.; Poncé, S.; Pouillon, Y.; Rangel, T.; Rignanese, G.-M.; Romero, A. H.; Rousseau, B.; Rubel, O.; Shukri, A. A.; Stankovski, M.; Torrent, M.; Van Setten, M. J.; Van Troeye, B.; Verstraete, M. J.; Waroquiers, D.; Wiktor, J.; Xu, B.; Zhou, A.; Zwanziger, J. W.

    2016-08-01

    ABINIT is a package whose main program allows one to find the total energy, charge density, electronic structure and many other properties of systems made of electrons and nuclei, (molecules and periodic solids) within Density Functional Theory (DFT), Many-Body Perturbation Theory (GW approximation and Bethe-Salpeter equation) and Dynamical Mean Field Theory (DMFT). ABINIT also allows to optimize the geometry according to the DFT forces and stresses, to perform molecular dynamics simulations using these forces, and to generate dynamical matrices, Born effective charges and dielectric tensors. The present paper aims to describe the new capabilities of ABINIT that have been developed since 2009. It covers both physical and technical developments inside the ABINIT code, as well as developments provided within the ABINIT package. The developments are described with relevant references, input variables, tests and tutorials.

  20. BYMUR software: a free and open source tool for quantifying and visualizing multi-risk analyses

    NASA Astrophysics Data System (ADS)

    Tonini, Roberto; Selva, Jacopo

    2013-04-01

    The BYMUR software aims to provide an easy-to-use open source tool for both computing multi-risk and managing/visualizing/comparing all the inputs (e.g. hazard, fragilities and exposure) as well as the corresponding results (e.g. risk curves, risk indexes). For all inputs, a complete management of inter-model epistemic uncertainty is considered. The BYMUR software will be one of the final products provided by the homonymous ByMuR project (http://bymur.bo.ingv.it/) funded by Italian Ministry of Education, Universities and Research (MIUR), focused to (i) provide a quantitative and objective general method for a comprehensive long-term multi-risk analysis in a given area, accounting for inter-model epistemic uncertainty through Bayesian methodologies, and (ii) apply the methodology to seismic, volcanic and tsunami risks in Naples (Italy). More specifically, the BYMUR software will be able to separately account for the probabilistic hazard assessment of different kind of hazardous phenomena, the relative (time-dependent/independent) vulnerabilities and exposure data, and their possible (predefined) interactions: the software will analyze these inputs and will use them to estimate both single- and multi- risk associated to a specific target area. In addition, it will be possible to connect the software to further tools (e.g., a full hazard analysis), allowing a dynamic I/O of results. The use of Python programming language guarantees that the final software will be open source and platform independent. Moreover, thanks to the integration of some most popular and rich-featured Python scientific modules (Numpy, Matplotlib, Scipy) with the wxPython graphical user toolkit, the final tool will be equipped with a comprehensive Graphical User Interface (GUI) able to control and visualize (in the form of tables, maps and/or plots) any stage of the multi-risk analysis. The additional features of importing/exporting data in MySQL databases and/or standard XML formats (for