Correlation mapping microscopy

NASA Astrophysics Data System (ADS)

McGrath, James; Alexandrov, Sergey; Owens, Peter; Subhash, Hrebesh M.; Leahy, Martin J.

2015-03-01

Changes in the microcirculation are associated with conditions such as Raynauds disease. Current modalities used to assess the microcirculation such as nailfold capillaroscopy are limited due to their depth ambiguity. A correlation mapping technique was recently developed to extend the capabilities of Optical Coherence Tomography to generate depth resolved images of the microcirculation. Here we present the extension of this technique to microscopy modalities, including confocal microscopy. It is shown that this correlation mapping microscopy technique can extend the capabilities of conventional microscopy to enable mapping of vascular networks in vivo with high spatial resolution.

In vivo correlation mapping microscopy

NASA Astrophysics Data System (ADS)

McGrath, James; Alexandrov, Sergey; Owens, Peter; Subhash, Hrebesh; Leahy, Martin

2016-04-01

To facilitate regular assessment of the microcirculation in vivo, noninvasive imaging techniques such as nailfold capillaroscopy are required in clinics. Recently, a correlation mapping technique has been applied to optical coherence tomography (OCT), which extends the capabilities of OCT to microcirculation morphology imaging. This technique, known as correlation mapping optical coherence tomography, has been shown to extract parameters, such as capillary density and vessel diameter, and key clinical markers associated with early changes in microvascular diseases. However, OCT has limited spatial resolution in both the transverse and depth directions. Here, we extend this correlation mapping technique to other microscopy modalities, including confocal microscopy, and take advantage of the higher spatial resolution offered by these modalities. The technique is achieved as a processing step on microscopy images and does not require any modification to the microscope hardware. Results are presented which show that this correlation mapping microscopy technique can extend the capabilities of conventional microscopy to enable mapping of vascular networks in vivo with high spatial resolution in both the transverse and depth directions.

Intensity-corrected Herschel Observations of Nearby Isolated Low-mass Clouds

NASA Astrophysics Data System (ADS)

Sadavoy, Sarah I.; Keto, Eric; Bourke, Tyler L.; Dunham, Michael M.; Myers, Philip C.; Stephens, Ian W.; Di Francesco, James; Webb, Kristi; Stutz, Amelia M.; Launhardt, Ralf; Tobin, John J.

2018-01-01

We present intensity-corrected Herschel maps at 100, 160, 250, 350, and 500 μm for 56 isolated low-mass clouds. We determine the zero-point corrections for Herschel Photodetector Array Camera and Spectrometer (PACS) and Spectral Photometric Imaging Receiver (SPIRE) maps from the Herschel Science Archive (HSA) using Planck data. Since these HSA maps are small, we cannot correct them using typical methods. Here we introduce a technique to measure the zero-point corrections for small Herschel maps. We use radial profiles to identify offsets between the observed HSA intensities and the expected intensities from Planck. Most clouds have reliable offset measurements with this technique. In addition, we find that roughly half of the clouds have underestimated HSA-SPIRE intensities in their outer envelopes relative to Planck, even though the HSA-SPIRE maps were previously zero-point corrected. Using our technique, we produce corrected Herschel intensity maps for all 56 clouds and determine their line-of-sight average dust temperatures and optical depths from modified blackbody fits. The clouds have typical temperatures of ∼14–20 K and optical depths of ∼10‑5–10‑3. Across the whole sample, we find an anticorrelation between temperature and optical depth. We also find lower temperatures than what was measured in previous Herschel studies, which subtracted out a background level from their intensity maps to circumvent the zero-point correction. Accurate Herschel observations of clouds are key to obtaining accurate density and temperature profiles. To make such future analyses possible, intensity-corrected maps for all 56 clouds are publicly available in the electronic version. Herschel is an ESA space observatory with science instruments provided by European-led Principal Investigator consortia and with important participation from NASA.

Sampling strategies to improve passive optical remote sensing of river bathymetry

USGS Publications Warehouse

Legleiter, Carl; Overstreet, Brandon; Kinzel, Paul J.

2018-01-01

Passive optical remote sensing of river bathymetry involves establishing a relation between depth and reflectance that can be applied throughout an image to produce a depth map. Building upon the Optimal Band Ratio Analysis (OBRA) framework, we introduce sampling strategies for constructing calibration data sets that lead to strong relationships between an image-derived quantity and depth across a range of depths. Progressively excluding observations that exceed a series of cutoff depths from the calibration process improved the accuracy of depth estimates and allowed the maximum detectable depth ($d_{max}$) to be inferred directly from an image. Depth retrieval in two distinct rivers also was enhanced by a stratified version of OBRA that partitions field measurements into a series of depth bins to avoid biases associated with under-representation of shallow areas in typical field data sets. In the shallower, clearer of the two rivers, including the deepest field observations in the calibration data set did not compromise depth retrieval accuracy, suggesting that $d_{max}$ was not exceeded and the reach could be mapped without gaps. Conversely, in the deeper and more turbid stream, progressive truncation of input depths yielded a plausible estimate of $d_{max}$ consistent with theoretical calculations based on field measurements of light attenuation by the water column. This result implied that the entire channel, including pools, could not be mapped remotely. However, truncation improved the accuracy of depth estimates in areas shallower than $d_{max}$, which comprise the majority of the channel and are of primary interest for many habitat-oriented applications.

Use of light absorbers to alter optical interrogation with epi-illumination and transillumination in three-dimensional cardiac models

NASA Astrophysics Data System (ADS)

Ramshesh, Venkat K.; Knisley, Stephen B.

2006-03-01

Cardiac optical mapping currently provides 2-D maps of transmembrane voltage-sensitive fluorescence localized near the tissue surface. Methods for interrogation at different depths are required for studies of arrhythmias and the effects of defibrillation shocks in 3-D cardiac tissue. We model the effects of coloading with a dye that absorbs excitation or fluorescence light on the radius and depth of the interrogated region with specific illumination and collection techniques. Results indicate radii and depths of interrogation are larger for transillumination versus epi-illumination, an effect that is more pronounced for broad-field excitation versus laser scanner. Coloading with a fluorescence absorber lessens interrogated depth for epi-illumination and increases it for transillumination, which is confirmed with measurements using transillumination of heart tissue slices. Coloading with an absorber of excitation light consistently decreases the interrogated depths. Transillumination and coloading also decrease the intensities of collected fluorescence. Thus, localization can be modified with wavelength-specific absorbers at the expense of a reduction in fluorescence intensity.

Modeling Martian Dust Using Mars-GRAM

NASA Technical Reports Server (NTRS)

Justh, Hilary L.; Justus, C. G.

2010-01-01

Engineering-level atmospheric model widely used for diverse mission applications. Mars-GRAM s perturbation modeling capability is commonly used, in a Monte-Carlo mode, to perform high fidelity engineering end-to-end simulations for entry, descent, and landing (EDL). From the surface to 80 km altitude, Mars-GRAM is based on NASA Ames Mars General Circulation Model (MGCM). Mars-GRAM and MGCM use surface topography from Mars Global Surveyor Mars Orbiter Laser Altimeter (MOLA), with altitudes referenced to the MOLA areoid, or constant potential surface. Traditional Mars-GRAM options for representing the mean atmosphere along entry corridors include: TES Mapping Years 1 and 2, with Mars-GRAM data coming from MGCM model results driven by observed TES dust optical depth TES Mapping Year 0, with user-controlled dust optical depth and Mars-GRAM data interpolated from MGCM model results driven by selected values of globally-uniform dust optical depth. Mars-GRAM 2005 has been validated against Radio Science data, and both nadir and limb data from the Thermal Emission Spectrometer (TES).

Depth estimation and camera calibration of a focused plenoptic camera for visual odometry

NASA Astrophysics Data System (ADS)

Zeller, Niclas; Quint, Franz; Stilla, Uwe

2016-08-01

This paper presents new and improved methods of depth estimation and camera calibration for visual odometry with a focused plenoptic camera. For depth estimation we adapt an algorithm previously used in structure-from-motion approaches to work with images of a focused plenoptic camera. In the raw image of a plenoptic camera, scene patches are recorded in several micro-images under slightly different angles. This leads to a multi-view stereo-problem. To reduce the complexity, we divide this into multiple binocular stereo problems. For each pixel with sufficient gradient we estimate a virtual (uncalibrated) depth based on local intensity error minimization. The estimated depth is characterized by the variance of the estimate and is subsequently updated with the estimates from other micro-images. Updating is performed in a Kalman-like fashion. The result of depth estimation in a single image of the plenoptic camera is a probabilistic depth map, where each depth pixel consists of an estimated virtual depth and a corresponding variance. Since the resulting image of the plenoptic camera contains two plains: the optical image and the depth map, camera calibration is divided into two separate sub-problems. The optical path is calibrated based on a traditional calibration method. For calibrating the depth map we introduce two novel model based methods, which define the relation of the virtual depth, which has been estimated based on the light-field image, and the metric object distance. These two methods are compared to a well known curve fitting approach. Both model based methods show significant advantages compared to the curve fitting method. For visual odometry we fuse the probabilistic depth map gained from one shot of the plenoptic camera with the depth data gained by finding stereo correspondences between subsequent synthesized intensity images of the plenoptic camera. These images can be synthesized totally focused and thus finding stereo correspondences is enhanced. In contrast to monocular visual odometry approaches, due to the calibration of the individual depth maps, the scale of the scene can be observed. Furthermore, due to the light-field information better tracking capabilities compared to the monocular case can be expected. As result, the depth information gained by the plenoptic camera based visual odometry algorithm proposed in this paper has superior accuracy and reliability compared to the depth estimated from a single light-field image.

Updating Mars-GRAM to Increase the Accuracy of Sensitivity Studies at Large Optical Depths

NASA Technical Reports Server (NTRS)

Justh, Hiliary L.; Justus, C. G.; Badger, Andrew M.

2010-01-01

The Mars Global Reference Atmospheric Model (Mars-GRAM) is an engineering-level atmospheric model widely used for diverse mission applications. Mars-GRAM s perturbation modeling capability is commonly used, in a Monte-Carlo mode, to perform high fidelity engineering end-to-end simulations for entry, descent, and landing (EDL). During the Mars Science Laboratory (MSL) site selection process, it was discovered that Mars-GRAM, when used for sensitivity studies for MapYear=0 and large optical depth values such as tau=3, is less than realistic. From the surface to 80 km altitude, Mars-GRAM is based on the NASA Ames Mars General Circulation Model (MGCM). MGCM results that were used for Mars-GRAM with MapYear set to 0 were from a MGCM run with a fixed value of tau=3 for the entire year at all locations. This has resulted in an imprecise atmospheric density at all altitudes. As a preliminary fix to this pressure-density problem, density factor values were determined for tau=0.3, 1 and 3 that will adjust the input values of MGCM MapYear 0 pressure and density to achieve a better match of Mars-GRAM MapYear 0 with Thermal Emission Spectrometer (TES) observations for MapYears 1 and 2 at comparable dust loading. Currently, these density factors are fixed values for all latitudes and Ls. Results will be presented from work being done to derive better multipliers by including variation with latitude and/or Ls by comparison of MapYear 0 output directly against TES limb data. The addition of these more precise density factors to Mars-GRAM 2005 Release 1.4 will improve the results of the sensitivity studies done for large optical depths.

Near-infrared image-guided laser ablation of artificial caries lesions.

PubMed

Tao, You-Chen; Fan, Kenneth; Fried, Daniel

2007-01-01

Laser removal of dental hard tissue can be combined with optical, spectral or acoustic feedback systems to selectively ablate dental caries and restorative materials. Near-infrared (NIR) imaging has considerable potential for the optical discrimination of sound and demineralized tissue. The objective of this study was to test the hypothesis that two-dimensional NIR images of demineralized tooth surfaces can be used to guide CO(2) laser ablation for the selective removal of artificial caries lesions. Highly patterned artificial lesions were produced by submerging 5 × 5 mm(2) bovine enamel samples in demineralized solution for a 9-day period while sound areas were protected with acid resistant varnish. NIR imaging and polarization sensitive optical coherence tomography (PS-OCT) were used to acquire depth-resolved images at a wavelength of 1310-nm. An imaging processing module was developed to analyze the NIR images and to generate optical maps. The optical maps were used to control a CO(2) laser for the selective removal of the lesions at a uniform depth. This experiment showed that the patterned artificial lesions were removed selectively using the optical maps with minimal damage to sound enamel areas. Post-ablation NIR and PS-OCT imaging confirmed that demineralized areas were removed while sound enamel was conserved. This study successfully demonstrated that near-IR imaging can be integrated with a CO(2) laser ablation system for the selective removal of dental caries.

Near-infrared image-guided laser ablation of artificial caries lesions

PubMed Central

Tao, You-Chen; Fan, Kenneth; Fried, Daniel

2012-01-01

Laser removal of dental hard tissue can be combined with optical, spectral or acoustic feedback systems to selectively ablate dental caries and restorative materials. Near-infrared (NIR) imaging has considerable potential for the optical discrimination of sound and demineralized tissue. The objective of this study was to test the hypothesis that two–dimensional NIR images of demineralized tooth surfaces can be used to guide CO2 laser ablation for the selective removal of artificial caries lesions. Highly patterned artificial lesions were produced by submerging 5 × 5 mm2 bovine enamel samples in demineralized solution for a 9-day period while sound areas were protected with acid resistant varnish. NIR imaging and polarization sensitive optical coherence tomography (PS-OCT) were used to acquire depth-resolved images at a wavelength of 1310-nm. An imaging processing module was developed to analyze the NIR images and to generate optical maps. The optical maps were used to control a CO2 laser for the selective removal of the lesions at a uniform depth. This experiment showed that the patterned artificial lesions were removed selectively using the optical maps with minimal damage to sound enamel areas. Post-ablation NIR and PS-OCT imaging confirmed that demineralized areas were removed while sound enamel was conserved. This study successfully demonstrated that near-IR imaging can be integrated with a CO2 laser ablation system for the selective removal of dental caries. PMID:22866210

Near-infrared image-guided laser ablation of artificial caries lesions

NASA Astrophysics Data System (ADS)

Tao, You-Chen; Fan, Kenneth; Fried, Daniel

2007-02-01

Laser removal of dental hard tissue can be combined with optical, spectral or acoustic feedback systems to selectively ablate dental caries and restorative materials. Near-infrared (NIR) imaging has considerable potential for the optical discrimination of sound and demineralized tissue. The objective of this study was to test the hypothesis that two-dimensional NIR images of demineralized tooth surfaces can be used to guide CO II laser ablation for the selective removal of artificial caries lesions. Highly patterned artificial lesions were produced by submerging 5 x 5 mm2 bovine enamel samples in demineralized solution for a 9-day period while sound areas were protected with acid resistant varnish. NIR imaging and polarization sensitive optical coherence tomography (PS-OCT) were used to acquire depth-resolved images at a wavelength of 1310-nm. An imaging processing module was developed to analyze the NIR images and to generate optical maps. The optical maps were used to control a CO II laser for the selective removal of the lesions at a uniform depth. This experiment showed that the patterned artificial lesions were removed selectively using the optical maps with minimal damage to sound enamel areas. Post-ablation NIR and PS-OCT imaging confirmed that demineralized areas were removed while sound enamel was conserved. This study successfully demonstrated that near-IR imaging can be integrated with a CO II laser ablation system for the selective removal of dental caries.

Validation of new satellite aerosol optical depth retrieval algorithm using Raman lidar observations at radiative transfer laboratory in Warsaw

NASA Astrophysics Data System (ADS)

Zawadzka, Olga; Stachlewska, Iwona S.; Markowicz, Krzysztof M.; Nemuc, Anca; Stebel, Kerstin

2018-04-01

During an exceptionally warm September of 2016, the unique, stable weather conditions over Poland allowed for an extensive testing of the new algorithm developed to improve the Meteosat Second Generation (MSG) Spinning Enhanced Visible and Infrared Imager (SEVIRI) aerosol optical depth (AOD) retrieval. The development was conducted in the frame of the ESA-ESRIN SAMIRA project. The new AOD algorithm aims at providing the aerosol optical depth maps over the territory of Poland with a high temporal resolution of 15 minutes. It was tested on the data set obtained between 11-16 September 2016, during which a day of relatively clean atmospheric background related to an Arctic airmass inflow was surrounded by a few days with well increased aerosol load of different origin. On the clean reference day, for estimating surface reflectance the AOD forecast available on-line via the Copernicus Atmosphere Monitoring Service (CAMS) was used. The obtained AOD maps were validated against AODs available within the Poland-AOD and AERONET networks, and with AOD values obtained from the PollyXT-UW lidar. of the University of Warsaw (UW).

Utilizing Mars Global Reference Atmospheric Model (Mars-GRAM 2005) to Evaluate Entry Probe Mission Sites

NASA Technical Reports Server (NTRS)

Justh, Hilary L.; Justus, C. G.

2008-01-01

Engineering-level atmospheric model widely used for diverse mission applications. Mars-GRAM s perturbation modeling capability is commonly used, in a Monte-Carlo mode, to perform high fidelity engineering end-to-end simulations for entry, descent, and landing (EDL)1. Traditional Mars-GRAM options for representing the mean atmosphere along entry corridors include: a) TES Mapping Years 1 and 2, with Mars-GRAM data coming from MGCM model results driven by observed TES dust optical depth; and b) TES Mapping Year 0, with user-controlled dust optical depth and Mars-GRAM data interpolated from MGCM model results driven by selected values of globally-uniform dust optical depth. From the surface to 80 km altitude, Mars-GRAM is based on NASA Ames Mars General Circulation Model (MGCM). Mars-GRAM and MGCM use surface topography from Mars Global Surveyor Mars Orbiter Laser Altimeter (MOLA), with altitudes referenced to the MOLA areoid, or constant potential surface. Mars-GRAM 2005 has been validated2 against Radio Science data, and both nadir and limb data from the Thermal Emission Spectrometer (TES)

Multimodal properties and dynamics of gradient echo quantum memory.

PubMed

Hétet, G; Longdell, J J; Sellars, M J; Lam, P K; Buchler, B C

2008-11-14

We investigate the properties of a recently proposed gradient echo memory (GEM) scheme for information mapping between optical and atomic systems. We show that GEM can be described by the dynamic formation of polaritons in k space. This picture highlights the flexibility and robustness with regards to the external control of the storage process. Our results also show that, as GEM is a frequency-encoding memory, it can accurately preserve the shape of signals that have large time-bandwidth products, even at moderate optical depths. At higher optical depths, we show that GEM is a high fidelity multimode quantum memory.

Site of the 2016 Summer Olympic Games viewed by NASA MISR

NASA Image and Video Library

2016-08-10

The Multi-angle Imaging SpectroRadiometer (MISR) instrument aboard NASA's Terra satellite passed directly over Rio de Janeiro, Brazil, on Aug. 2, 2016, just prior to the opening of the Summer Olympic Games. On the left is an image from MISR's nadir (downward-looking) camera; the width of the image is 235 miles (378 kilometers), and Rio de Janeiro is visible as the large gray area on the coast in the center. The black asterisk marks the location of the Maracanã Stadium in downtown, where the opening ceremonies were held. In the weeks leading up to the Aug. 5 opening ceremonies in Rio de Janeiro, there have been reports of elevated levels of particulate matter in the region. Particulate matter refers to tiny airborne droplets or pieces of soot and dust that can end up in the lungs, comprising an all-too-common problem for many cities around the world. MISR data are routinely used to estimate the amount of air pollution via measurements of aerosol optical depth, which is a measure of how much incoming light from the sun is blocked by particles in the atmosphere. On the right, a map of aerosol optical depth is superimposed on the image. Individual squares making up this map measure 2.7 miles (4.4 kilometers) on a side, and holes in the map occur where an aerosol amount could not be determined, such as where clouds are present. Optical depth over Rio is slightly elevated compared to its surroundings, most likely due to the presence of air pollution, with values from 0.15-0.25. For reference, an optical depth of 0.2 corresponds to light haze. The product shown here is a prototype of a new version of the MISR aerosol product to be publicly released in the near future, and increases the spatial resolution of the aerosol information by a factor of 16 compared to the currently available product, making it possible to observe the fine details of optical depth over urban areas. These data were captured during Terra orbit 88426. http://photojournal.jpl.nasa.gov/catalog/PIA20885

Airborne Lidar Measurements of Aerosol Optical Properties During SAFARI-2000

NASA Technical Reports Server (NTRS)

McGill, M. J.; Hlavka, D. L.; Hart, W. D.; Welton, E. J.; Campbell, J. R.; Starr, David OC. (Technical Monitor)

2002-01-01

The Cloud Physics Lidar (CPL) operated onboard the NASA ER-2 high altitude aircraft during the SAFARI-2000 field campaign. The CPL provided high spatial resolution measurements of aerosol optical properties at both 1064 nm and 532 nm. We present here results of planetary boundary layer (PBL) aerosol optical depth analysis and profiles of aerosol extinction. Variation of optical depth and extinction are examined as a function of regional location. The wide-scale aerosol mapping obtained by the CPL is a unique data set that will aid in future studies of aerosol transport. Comparisons between the airborne CPL and ground-based MicroPulse Lidar Network (MPL-Net) sites are shown to have good agreement.

Mars-GRAM: Increasing the Precision of Sensitivity Studies at Large Optical Depths

NASA Technical Reports Server (NTRS)

Justh, Hilary L.; Justus, C. G.; Badger, Andrew M.

2010-01-01

The Mars Global Reference Atmospheric Model (Mars-GRAM) is an engineering-level atmospheric model widely used for diverse mission applications. Mars-GRAM's perturbation modeling capability is commonly used, in a Monte-Carlo mode, to perform high fidelity engineering end-to-end simulations for entry, descent, and landing (EDL). It has been discovered during the Mars Science Laboratory (MSL) site selection process that Mars-GRAM, when used for sensitivity studies for MapYear=0 and large optical depth values such as tau=3, is less than realistic. A comparison study between Mars atmospheric density estimates from Mars-GRAM and measurements by Mars Global Surveyor (MGS) has been undertaken for locations of varying latitudes, Ls, and LTST on Mars. The preliminary results from this study have validated the Thermal Emission Spectrometer (TES) limb data. From the surface to 80 km altitude, Mars-GRAM is based on the NASA Ames Mars General Circulation Model (MGCM). MGCM results that were used for Mars-GRAM with MapYear=0 were from a MGCM run with a fixed value of tau=3 for the entire year at all locations. This has resulted in an imprecise atmospheric density at all altitudes. To solve this pressure-density problem, density factor values were determined for tau=.3, 1 and 3 that will adjust the input values of MGCM MapYear 0 pressure and density to achieve a better match of Mars-GRAM MapYear 0 with TES observations for MapYears 1 and 2 at comparable dust loading. The addition of these density factors to Mars-GRAM will improve the results of the sensitivity studies done for large optical depths.

Global Mapping of Underwater UV Irradiances and DNA-Weighted Exposures using TOMS and SeaWiFS Data Products

NASA Technical Reports Server (NTRS)

Vasilkov, Alexander; Krotkov, Nickolay; Herman, Jay; McClain, Charles; Arrigo, Kevin; Robinson, Wayne

1999-01-01

The global stratospheric ozone-layer depletion results In an increase in biologically harmful ultraviolet (UV) radiation reaching the surface and penetrating to ecologically significant depths in natural waters. Such an increase can be estimated on a global scale by combining satellite estimates of UV irradiance at the ocean surface from the Total Ozone Mapping Spectrometer (TOMS) satellite instrument with the SeaWIFS satellite ocean-color measurements in the visible spectral region. In this paper we propose a model of seawater optical properties in the UV spectral region based on the Case I water model in the visible range. The inputs to the model are standard monthly SeaWiFS products: chlorophyll concentration and the diffuse attenuation coefficient at 490nm. Penetration of solar UV radiation to different depths in open ocean waters is calculated using the RT (radiative transfer) quasi-single scattering approximation (QSSA). The accuracy of the QSSA approximation in the water is tested using more accurate codes. The sensitivity study of the underwater UV irradiance to atmospheric and oceanic optical properties have shown that the main environmental parameters controlling the absolute levels of the UVB (280-320nm) and DNA-weighted irradiance underwater are: solar-zenith angle, cloud transmittance, water optical properties, and total ozone. Weekly maps of underwater UV irradiance and DNA-weighted exposure are calculated using monthly-mean SeaWiFS chlorophyll and diffuse attenuation coefficient products, daily SeaWiFS cloud fraction data, and the TOMS-derived surface UV irradiance daily maps. The final products include global maps of weekly-average UVB irradiance and DNA-weighted daily exposures at 3m and 10m, and depths where the UVB irradiance and DNA-weighted dose rate at local noon are equal to 10% of their surface values.

Constraining the Dust Opacity Law in Three Small and Isolated Molecular Clouds

DOE Office of Scientific and Technical Information (OSTI.GOV)

Webb, K. A.; Thanjavur, K.; Di Francesco, J.

Density profiles of isolated cores derived from thermal dust continuum emission rely on models of dust properties, such as mass opacity, that are poorly constrained. With complementary measures from near-infrared extinction maps, we can assess the reliability of commonly used dust models. In this work, we compare Herschel -derived maps of the optical depth with equivalent maps derived from CFHT WIRCAM near-infrared observations for three isolated cores: CB 68, L 429, and L 1552. We assess the dust opacities provided from four models: OH1a, OH5a, Orm1, and Orm4. Although the consistency of the models differs between the three sources, themore » results suggest that the optical properties of dust in the envelopes of the cores are best described by either silicate and bare graphite grains (e.g., Orm1) or carbonaceous grains with some coagulation and either thin or no ice mantles (e.g., OH5a). None of the models, however, individually produced the most consistent optical depth maps for every source. The results suggest that either the dust in the cores is not well-described by any one dust property model, the application of the dust models cannot be extended beyond the very center of the cores, or more complex SED fitting functions are necessary.« less

Validation of TOMS Aerosol Products using AERONET Observations

NASA Technical Reports Server (NTRS)

Bhartia, P. K.; Torres, O.; Sinyuk, A.; Holben, B.

2002-01-01

The Total Ozone Mapping Spectrometer (TOMS) aerosol algorithm uses measurements of radiances at two near UV channels in the range 331-380 nm to derive aerosol optical depth and single scattering albedo. Because of the low near UV surface albedo of all terrestrial surfaces (between 0.02 and 0.08), the TOMS algorithm has the capability of retrieving aerosol properties over the oceans and the continents. The Aerosol Robotic Network (AERONET) routinely derives spectral aerosol optical depth and single scattering albedo at a large number of sites around the globe. We have performed comparisons of both aerosol optical depth and single scattering albedo derived from TOMS and AERONET. In general, the TOMS aerosol products agree well with the ground-based observations, Results of this validation will be discussed.

Optical gesture sensing and depth mapping technologies for head-mounted displays: an overview

NASA Astrophysics Data System (ADS)

Kress, Bernard; Lee, Johnny

2013-05-01

Head Mounted Displays (HMDs), and especially see-through HMDs have gained renewed interest in recent time, and for the first time outside the traditional military and defense realm, due to several high profile consumer electronics companies presenting their products to hit market. Consumer electronics HMDs have quite different requirements and constrains as their military counterparts. Voice comments are the de-facto interface for such devices, but when the voice recognition does not work (not connection to the cloud for example), trackpad and gesture sensing technologies have to be used to communicate information to the device. We review in this paper the various technologies developed today integrating optical gesture sensing in a small footprint, as well as the various related 3d depth mapping sensors.

Mapping variability of soil water content and flux across 1-1000 m scales using the Actively Heated Fiber Optic method

NASA Astrophysics Data System (ADS)

Sayde, Chadi; Buelga, Javier Benitez; Rodriguez-Sinobas, Leonor; El Khoury, Laureine; English, Marshall; van de Giesen, Nick; Selker, John S.

2014-09-01

The Actively Heated Fiber Optic (AHFO) method is shown to be capable of measuring soil water content several times per hour at 0.25 m spacing along cables of multiple kilometers in length. AHFO is based on distributed temperature sensing (DTS) observation of the heating and cooling of a buried fiber-optic cable resulting from an electrical impulse of energy delivered from the steel cable jacket. The results presented were collected from 750 m of cable buried in three 240 m colocated transects at 30, 60, and 90 cm depths in an agricultural field under center pivot irrigation. The calibration curve relating soil water content to the thermal response of the soil to a heat pulse of 10 W m-1 for 1 min duration was developed in the lab. This calibration was found applicable to the 30 and 60 cm depth cables, while the 90 cm depth cable illustrated the challenges presented by soil heterogeneity for this technique. This method was used to map with high resolution the variability of soil water content and fluxes induced by the nonuniformity of water application at the surface.

Time-resolved absorption and hemoglobin concentration difference maps: a method to retrieve depth-related information on cerebral hemodynamics.

NASA Astrophysics Data System (ADS)

Montcel, Bruno; Chabrier, Renée; Poulet, Patrick

2006-12-01

Time-resolved diffuse optical methods have been applied to detect hemodynamic changes induced by cerebral activity. We describe a near infrared spectroscopic (NIRS) reconstruction free method which allows retrieving depth-related information on absorption variations. Variations in the absorption coefficient of tissues have been computed over the duration of the whole experiment, but also over each temporal step of the time-resolved optical signal, using the microscopic Beer-Lambert law.Finite element simulations show that time-resolved computation of the absorption difference as a function of the propagation time of detected photons is sensitive to the depth profile of optical absorption variations. Differences in deoxyhemoglobin and oxyhemoglobin concentrations can also be calculated from multi-wavelength measurements. Experimental validations of the simulated results have been obtained for resin phantoms. They confirm that time-resolved computation of the absorption differences exhibited completely different behaviours, depending on whether these variations occurred deeply or superficially. The hemodynamic response to a short finger tapping stimulus was measured over the motor cortex and compared to experiments involving Valsalva manoeuvres. Functional maps were also calculated for the hemodynamic response induced by finger tapping movements.

Time-resolved absorption and hemoglobin concentration difference maps: a method to retrieve depth-related information on cerebral hemodynamics.

PubMed

Montcel, Bruno; Chabrier, Renée; Poulet, Patrick

2006-12-11

Time-resolved diffuse optical methods have been applied to detect hemodynamic changes induced by cerebral activity. We describe a near infrared spectroscopic (NIRS) reconstruction free method which allows retrieving depth-related information on absorption variations. Variations in the absorption coefficient of tissues have been computed over the duration of the whole experiment, but also over each temporal step of the time-resolved optical signal, using the microscopic Beer-Lambert law.Finite element simulations show that time-resolved computation of the absorption difference as a function of the propagation time of detected photons is sensitive to the depth profile of optical absorption variations. Differences in deoxyhemoglobin and oxyhemoglobin concentrations can also be calculated from multi-wavelength measurements. Experimental validations of the simulated results have been obtained for resin phantoms. They confirm that time-resolved computation of the absorption differences exhibited completely different behaviours, depending on whether these variations occurred deeply or superficially. The hemodynamic response to a short finger tapping stimulus was measured over the motor cortex and compared to experiments involving Valsalva manoeuvres. Functional maps were also calculated for the hemodynamic response induced by finger tapping movements.

Detection, mapping, and quantification of single walled carbon nanotubes in histological specimens with photoacoustic microscopy.

PubMed

Avti, Pramod K; Hu, Song; Favazza, Christopher; Mikos, Antonios G; Jansen, John A; Shroyer, Kenneth R; Wang, Lihong V; Sitharaman, Balaji

2012-01-01

In the present study, the efficacy of multi-scale photoacoustic microscopy (PAM) was investigated to detect, map, and quantify trace amounts [nanograms (ng) to micrograms (µg)] of SWCNTs in a variety of histological tissue specimens consisting of cancer and benign tissue biopsies (histological specimens from implanted tissue engineering scaffolds). Optical-resolution (OR) and acoustic-resolution (AR)--Photoacoustic microscopy (PAM) was employed to detect, map and quantify the SWCNTs in a variety of tissue histological specimens and compared with other optical techniques (bright-field optical microscopy, Raman microscopy, near infrared (NIR) fluorescence microscopy). Both optical-resolution and acoustic-resolution PAM, allow the detection and quantification of SWCNTs in histological specimens with scalable spatial resolution and depth penetration. The noise-equivalent detection sensitivity to SWCNTs in the specimens was calculated to be as low as ∼7 pg. Image processing analysis further allowed the mapping, distribution, and quantification of the SWCNTs in the histological sections. The results demonstrate the potential of PAM as a promising imaging technique to detect, map, and quantify SWCNTs in histological specimens, and could complement the capabilities of current optical and electron microscopy techniques in the analysis of histological specimens containing SWCNTs.

Strategies to Improve the Accuracy of Mars-GRAM Sensitivity Studies at Large Optical Depths

NASA Technical Reports Server (NTRS)

Justh, Hilary L.; Justus, Carl G.; Badger, Andrew M.

2010-01-01

The poster provides an overview of techniques to improve the Mars Global Reference Atmospheric Model (Mars-GRAM) sensitivity. It has been discovered during the Mars Science Laboratory (MSL) site selection process that the Mars Global Reference Atmospheric Model (Mars-GRAM) when used for sensitivity studies for TES MapYear = 0 and large optical depth values such as tau = 3 is less than realistic. A preliminary fix has been made to Mars-GRAM by adding a density factor value that was determined for tau = 0.3, 1 and 3.

Decomposition of the optical transfer function: wavefront coding imaging systems

NASA Astrophysics Data System (ADS)

Muyo, Gonzalo; Harvey, Andy R.

2005-10-01

We describe the mapping of the optical transfer function (OTF) of an incoherent imaging system into a geometrical representation. We show that for defocused traditional and wavefront-coded systems the OTF can be represented as a generalized Cornu spiral. This representation provides a physical insight into the way in which wavefront coding can increase the depth of field of an imaging system and permits analytical quantification of salient OTF parameters, such as the depth of focus, the location of nulls, and amplitude and phase modulation of the wavefront-coding OTF.

Effects of spatial variation of skull and cerebrospinal fluid layers on optical mapping of brain activities

NASA Astrophysics Data System (ADS)

Wang, Shuping; Shibahara, Nanae; Kuramashi, Daishi; Okawa, Shinpei; Kakuta, Naoto; Okada, Eiji; Maki, Atsushi; Yamada, Yukio

2010-07-01

In order to investigate the effects of anatomical variation in human heads on the optical mapping of brain activity, we perform simulations of optical mapping by solving the photon diffusion equation for layered-models simulating human heads using the finite element method (FEM). Particularly, the effects of the spatial variations in the thicknesses of the skull and cerebrospinal fluid (CSF) layers on mapping images are investigated. Mapping images of single active regions in the gray matter layer are affected by the spatial variations in the skull and CSF layer thicknesses, although the effects are smaller than those of the positions of the active region relative to the data points. The increase in the skull thickness decreases the sensitivity of the images to active regions, while the increase in the CSF layer thickness increases the sensitivity in general. The images of multiple active regions are also influenced by their positions relative to the data points and by their depths from the skin surface.

SLIME: scattering labeled imaging of microvasculature in excised tissues using OCT (Conference Presentation)

NASA Astrophysics Data System (ADS)

Liu, Yehe; Gu, Shi; Watanabe, Michiko; Rollins, Andrew M.; Jenkins, Michael W.

2017-02-01

Abnormal coronary development causes various health problems. However, coronary development remains one of the highly neglected areas in developmental cardiology due to limited technology. Currently, there is not a robust method available to map the microvasculature throughout the entire embryonic heart in 3D. This is a challenging task because it requires both micron level resolution over a large field of view and sufficient imaging depth. Speckle-variance optical coherence tomography (OCT) has reasonable resolution for coronary vessel mapping, but limited penetration depth and sensitivity to bulk motion made it impossible to apply this method to late-stage beating hearts. Some success has been achieved with coronary dye perfusion, but smaller vessels are not efficiently stained and penetration depth is still an issue. To address this problem, we present an OCT imaging procedure using optical clearing and a contrast agent (titanium dioxide) that enables 3D mapping of the coronary microvasculature in developing embryonic hearts. In brief, the hearts of stage 36 quail embryos were perfused with a low viscosity mixture of polyvinyl acetate (PVA) and titanium dioxide through the aorta using micropipette injection. After perfusion, the viscosity of the solution was increased by crosslinking the PVA polymer chains with borate ions. The tissue was then optically cleared. The titanium dioxide particles remaining in the coronaries provided a strong OCT signal, while the rest of the cardiac structures became relatively transparent. Using this technique, we are able to investigate coronary morphologies in different disease models.

Benthic Habitat Mapping by Combining Lyzenga’s Optical Model and Relative Water Depth Model in Lintea Island, Southeast Sulawesi

NASA Astrophysics Data System (ADS)

Hafizt, M.; Manessa, M. D. M.; Adi, N. S.; Prayudha, B.

2017-12-01

Benthic habitat mapping using satellite data is one challenging task for practitioners and academician as benthic objects are covered by light-attenuating water column obscuring object discrimination. One common method to reduce this water-column effect is by using depth-invariant index (DII) image. However, the application of the correction in shallow coastal areas is challenging as a dark object such as seagrass could have a very low pixel value, preventing its reliable identification and classification. This limitation can be solved by specifically applying a classification process to areas with different water depth levels. The water depth level can be extracted from satellite imagery using Relative Water Depth Index (RWDI). This study proposed a new approach to improve the mapping accuracy, particularly for benthic dark objects by combining the DII of Lyzenga’s water column correction method and the RWDI of Stumpt’s method. This research was conducted in Lintea Island which has a high variation of benthic cover using Sentinel-2A imagery. To assess the effectiveness of the proposed new approach for benthic habitat mapping two different classification procedures are implemented. The first procedure is the commonly applied method in benthic habitat mapping where DII image is used as input data to all coastal area for image classification process regardless of depth variation. The second procedure is the proposed new approach where its initial step begins with the separation of the study area into shallow and deep waters using the RWDI image. Shallow area was then classified using the sunglint-corrected image as input data and the deep area was classified using DII image as input data. The final classification maps of those two areas were merged as a single benthic habitat map. A confusion matrix was then applied to evaluate the mapping accuracy of the final map. The result shows that the new proposed mapping approach can be used to map all benthic objects in all depth ranges and shows a better accuracy compared to that of classification map produced using only with DII.

Detection, Mapping, and Quantification of Single Walled Carbon Nanotubes in Histological Specimens with Photoacoustic Microscopy

PubMed Central

Mikos, Antonios G.; Jansen, John A.; Shroyer, Kenneth R.; Wang, Lihong V.; Sitharaman, Balaji

2012-01-01

Aims In the present study, the efficacy of multi-scale photoacoustic microscopy (PAM) was investigated to detect, map, and quantify trace amounts [nanograms (ng) to micrograms (µg)] of SWCNTs in a variety of histological tissue specimens consisting of cancer and benign tissue biopsies (histological specimens from implanted tissue engineering scaffolds). Materials and Methods Optical-resolution (OR) and acoustic-resolution (AR) - Photoacoustic microscopy (PAM) was employed to detect, map and quantify the SWCNTs in a variety of tissue histological specimens and compared with other optical techniques (bright-field optical microscopy, Raman microscopy, near infrared (NIR) fluorescence microscopy). Results Both optical-resolution and acoustic-resolution PAM, allow the detection and quantification of SWCNTs in histological specimens with scalable spatial resolution and depth penetration. The noise-equivalent detection sensitivity to SWCNTs in the specimens was calculated to be as low as ∼7 pg. Image processing analysis further allowed the mapping, distribution, and quantification of the SWCNTs in the histological sections. Conclusions The results demonstrate the potential of PAM as a promising imaging technique to detect, map, and quantify SWCNTs in histological specimens, and could complement the capabilities of current optical and electron microscopy techniques in the analysis of histological specimens containing SWCNTs. PMID:22496892

Urban-scale mapping of PM2.5 distribution via data fusion between high-density sensor network and MODIS Aerosol Optical Depth

NASA Astrophysics Data System (ADS)

Ba, Yu Tao; xian Liu, Bao; Sun, Feng; Wang, Li hua; Tang, Yu jia; Zhang, Da wei

2017-04-01

High-resolution mapping of PM2.5 is the prerequisite for precise analytics and subsequent anti-pollution interventions. Considering the large variances of particulate distribution, urban-scale mapping is challenging either with ground-based fixed stations, with satellites or via models. In this study, a dynamic fusion method between high-density sensor network and MODIS Aerosol Optical Depth (AOD) was introduced. The sensor network was deployed in Beijing ( > 1000 fixed monitors across 16000 km2 area) to provide raw observations with high temporal resolution (sampling interval < 1 hour), high spatial resolution in flat areas ( < 1 km), and low spatial resolution in mountainous areas ( > 5 km). The MODIS AOD was calibrated to provide distribution map with low temporal resolution (daily) and moderate spatial resolution ( = 3 km). By encoding the data quality and defects (e.g. could, reflectance, abnormal), a hybrid interpolation procedure with cross-validation generated PM2.5 distribution with both high temporal and spatial resolution. Several no-pollutant and high-pollution periods were tested to validate the proposed fusion method for capturing the instantaneous patterns of PM2.5 emission.

Bottom depth and type for shallow waters: Hyperspectral observations from a blimp

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lee, ZhongPing; Carder, K.; Steward, R.

1997-08-01

In a study of a blimp transect over Tampa Bay (Florida), hyperspectral upwelling radiance over the sand and seagrass bottoms was measured. These measurements were converted to hyperspectral remote-sensing reflectances. Using a shallow-water remote-sensing-reflectance model, in-water optical properties, bottom depths and bottom albedos were derived analytically and simultaneously by an optimization procedure. In the process, curvatures of sand and seagrass albedos were used. Also used was a model of absorption spectrum of phytoplankton pigments. The derived bottom depths were compared with bathymetry charts and found to agree well. This study suggests that a low-flying blimp is a useful platform formore » the study and mapping of coastal water environments. The optical model as well as the data-reduction procedure used are practical for the retrieval of shallow water optical properties.« less

Differential Measurement Periodontal Structures Mapping System

NASA Technical Reports Server (NTRS)

Companion, John A. (Inventor)

1998-01-01

This invention relates to a periodontal structure mapping system employing a dental handpiece containing first and second acoustic sensors for locating the Cemento-Enamel Junction (CEJ) and measuring the differential depth between the CEJ and the bottom of the periodontal pocket. Measurements are taken at multiple locations on each tooth of a patient, observed, analyzed by an optical analysis subsystem, and archived by a data storage system for subsequent study and comparison with previous and subsequent measurements. Ultrasonic transducers for the first and second acoustic sensors are contained within the handpiece and in connection with a control computer. Pressurized water is provided for the depth measurement sensor and a linearly movable probe sensor serves as the sensor for the CEJ finder. The linear movement of the CEJ sensor is obtained by a control computer actuated by the prober. In an alternate embodiment, the CEJ probe is an optical fiber sensor with appropriate analysis structure provided therefor.

High resolution coherence domain depth-resolved nailfold capillaroscopy based on correlation mapping optical coherence tomography

NASA Astrophysics Data System (ADS)

Subhash, Hrebesh M.; O'Gorman, Sean; Neuhaus, Kai; Leahy, Martin

2014-03-01

In this paper we demonstrate a novel application of correlation mapping optical coherence tomography (cm-OCT) for volumetric nailfold capillaroscopy (NFC). NFC is a widely used non-invasive diagnostic method to analyze capillary morphology and microvascular abnormalities of nailfold area for a range of disease conditions. However, the conventional NFC is incapable of providing volumetric imaging, when volumetric quantitative microangiopathic parameters such as plexus morphology, capillary density, and morphologic anomalies of the end row loops most critical. cm-OCT is a recently developed well established coherence domain magnitude based angiographic modality, which takes advantage of the time-varying speckle effect, which is normally dominant in the vicinity of vascular regions compared to static tissue region. It utilizes the correlation coefficient as a direct measurement of decorrelation between two adjacent B-frames to enhance the visibility of depth-resolved microcirculation.

Airborne detection of oceanic turbidity cell structure using depth-resolved laser-induced water Raman backscatter

NASA Technical Reports Server (NTRS)

Hoge, F. E.; Swift, R. N.

1983-01-01

Airborne laser-induced, depth-resolved water Raman backscatter is useful in the detection and mapping of water optical transmission variations. This test, together with other field experiments, has identified the need for additional field experiments to resolve the degree of the contribution to the depth-resolved, Raman-backscattered signal waveform that is due to (1) sea surface height or elevation probability density; (2) off-nadir laser beam angle relative to the mean sea surface; and (3) the Gelbstoff fluorescence background, and the analytical techniques required to remove it. When converted to along-track profiles, the waveforms obtained reveal cells of a decreased Raman backscatter superimposed on an overall trend of monotonically decreasing water column optical transmission.

Deep-tissue temperature mapping by multi-illumination photoacoustic tomography aided by a diffusion optical model: a numerical study

NASA Astrophysics Data System (ADS)

Zhou, Yuan; Tang, Eric; Luo, Jianwen; Yao, Junjie

2018-01-01

Temperature mapping during thermotherapy can help precisely control the heating process, both temporally and spatially, to efficiently kill the tumor cells and prevent the healthy tissues from heating damage. Photoacoustic tomography (PAT) has been used for noninvasive temperature mapping with high sensitivity, based on the linear correlation between the tissue's Grüneisen parameter and temperature. However, limited by the tissue's unknown optical properties and thus the optical fluence at depths beyond the optical diffusion limit, the reported PAT thermometry usually takes a ratiometric measurement at different temperatures and thus cannot provide absolute measurements. Moreover, ratiometric measurement over time at different temperatures has to assume that the tissue's optical properties do not change with temperatures, which is usually not valid due to the temperature-induced hemodynamic changes. We propose an optical-diffusion-model-enhanced PAT temperature mapping that can obtain the absolute temperature distribution in deep tissue, without the need of multiple measurements at different temperatures. Based on the initial acoustic pressure reconstructed from multi-illumination photoacoustic signals, both the local optical fluence and the optical parameters including absorption and scattering coefficients are first estimated by the optical-diffusion model, then the temperature distribution is obtained from the reconstructed Grüneisen parameters. We have developed a mathematic model for the multi-illumination PAT of absolute temperatures, and our two-dimensional numerical simulations have shown the feasibility of this new method. The proposed absolute temperature mapping method may set the technical foundation for better temperature control in deep tissue in thermotherapy.

Multichannel optical mapping: investigation of depth information

NASA Astrophysics Data System (ADS)

Sase, Ichiro; Eda, Hideo; Seiyama, Akitoshi; Tanabe, Hiroki C.; Takatsuki, Akira; Yanagida, Toshio

2001-06-01

Near infrared (NIR) light has become a powerful tool for non-invasive imaging of human brain activity. Many systems have been developed to capture the changes in regional brain blood flow and hemoglobin oxygenation, which occur in the human cortex in response to neural activity. We have developed a multi-channel reflectance imaging system, which can be used as a `mapping device' and also as a `multi-channel spectrophotometer'. In the present study, we visualized changes in the hemodynamics of the human occipital region in multiple ways. (1) Stimulating left and right primary visual cortex independently by showing sector shaped checkerboards sequentially over the contralateral visual field, resulted in corresponding changes in the hemodynamics observed by `mapping' measurement. (2) Simultaneous measurement of functional-MRI and NIR (changes in total hemoglobin) during visual stimulation showed good spatial and temporal correlation with each other. (3) Placing multiple channels densely over the occipital region demonstrated spatial patterns more precisely, and depth information was also acquired by placing each pair of illumination and detection fibers at various distances. These results indicate that optical method can provide data for 3D analysis of human brain functions.

Superior spatial resolution in confocal X-ray techniques using collimating channel array optics: elemental mapping and speciation in archaeological human bone

DOE Office of Scientific and Technical Information (OSTI.GOV)

Choudhury, S.; Agyeman-Budu, D. N.; Woll, A. R.

Confocal X-ray fluorescence imaging (CXFI) and confocal X-ray absorption spectroscopy (CXAS) respectively enable the study of three dimensionally resolved localization and speciation of elements. Applied to a thick sample, essentially any volume element of interest within the X-ray fluorescence escape depth can be examined without the need for physical thin sectioning. To date, X-ray confocal detection generally has employed a polycapillary optic in front of the detector to collect fluorescence from the probe volume formed at the intersection of its focus with the incident microfocus beam. This work demonstrates the capability of a novel Collimating Channel Array (CCA) optic inmore » providing an improved and essentially energy independent depth resolution approaching 2 μm. By presenting a comparison of elemental maps of archaeological bone collected without confocal detection, and with polycapillary- and CCA-based confocal detection, this study highlights the strengths and limitations of each mode. Unlike the polycapillary, the CCA shows similar spatial resolution in maps for both low (Ca) and high (Pb and Sr) energy X-ray fluorescence, thus illustrating the energy independent nature of the CCA optic resolution. While superior spatial resolution is demonstrated for all of these elements, the most significant improvement is observed for Ca, demonstrating the advantage of employing the CCA optic in examining light elements. In addition to CXFI, this configuration also enables the collection of Pb L3 CXAS data from micro-volumes with dimensions comparable to bone microstructures of interest. Our CXAS result, which represents the first CCA-based biological CXAS, demonstrates the ability of CCA optics to collect site specific spectroscopic information. The demonstrated combination of site-specific elemental localization and speciation data will be useful in diverse fields.« less

Improving Mars-GRAM: Increasing the Accuracy of Sensitivity Studies at Large Optical Depths

NASA Technical Reports Server (NTRS)

Justh, Hilary L.; Justus, C. G.; Badger, Andrew M.

2010-01-01

Extensively utilized for numerous mission applications, the Mars Global Reference Atmospheric Model (Mars-GRAM) is an engineering-level atmospheric model. In a Monte-Carlo mode, Mars-GRAM's perturbation modeling capability is used to perform high fidelity engineering end-to-end simulations for entry, descent, and landing (EDL). Mars-GRAM has been found to be inexact when used during the Mars Science Laboratory (MSL) site selection process for sensitivity studies for MapYear=0 and large optical depth values such as tau=3. Mars-GRAM is based on the NASA Ames Mars General Circulation Model (MGCM) from the surface to 80 km altitude. Mars-GRAM with the MapYear parameter set to 0 utilizes results from a MGCM run with a fixed value of tau=3 at all locations for the entire year. Imprecise atmospheric density and pressure at all altitudes is a consequence of this use of MGCM with tau=3. Density factor values have been determined for tau=0.3, 1 and 3 as a preliminary fix to this pressure-density problem. These factors adjust the input values of MGCM MapYear 0 pressure and density to achieve a better match of Mars-GRAM MapYear 0 with Thermal Emission Spectrometer (TES) observations for MapYears 1 and 2 at comparable dust loading. These density factors are fixed values for all latitudes and Ls and are included in Mars-GRAM Release 1.3. Work currently being done, to derive better multipliers by including variations with latitude and/or Ls by comparison of MapYear 0 output directly against TES limb data, will be highlighted in the presentation. The TES limb data utilized in this process has been validated by a comparison study between Mars atmospheric density estimates from Mars-GRAM and measurements by Mars Global Surveyor (MGS). This comparison study was undertaken for locations on Mars of varying latitudes, Ls, and LTST. The more precise density factors will be included in Mars-GRAM 2005 Release 1.4 and thus improve the results of future sensitivity studies done for large optical depths.

Measurements of the thermal coefficient of optical attenuation at different depth regions of in vivo human skins using optical coherence tomography: a pilot study

PubMed Central

Su, Ya; Yao, X. Steve; Li, Zhihong; Meng, Zhuo; Liu, Tiegen; Wang, Longzhi

2015-01-01

We present detailed measurement results of optical attenuation’s thermal coefficients (referenced to the temperature of the skin surface) in different depth regions of in vivo human forearm skins using optical coherence tomography (OCT). We first design a temperature control module with an integrated optical probe to precisely control the surface temperature of a section of human skin. We propose a method of using the correlation map to identify regions in the skin having strong correlations with the surface temperature of the skin and find that the attenuation coefficient in these regions closely follows the variation of the surface temperature without any hysteresis. We observe a negative thermal coefficient of attenuation in the epidermis. While in dermis, the slope signs of the thermal coefficient of attenuation are different at different depth regions for a particular subject, however, the depth regions with a positive (or negative) slope are different in different subjects. We further find that the magnitude of the thermal coefficient of attenuation coefficient is greater in epidermis than in dermis. We believe the knowledge of such thermal properties of skins is important for several noninvasive diagnostic applications, such as OCT glucose monitoring, and the method demonstrated in this paper is effective in studying the optical and biological properties in different regions of skin. PMID:25780740

3D resolved mapping of optical aberrations in thick tissues

PubMed Central

Zeng, Jun; Mahou, Pierre; Schanne-Klein, Marie-Claire; Beaurepaire, Emmanuel; Débarre, Delphine

2012-01-01

We demonstrate a simple method for mapping optical aberrations with 3D resolution within thick samples. The method relies on the local measurement of the variation in image quality with externally applied aberrations. We discuss the accuracy of the method as a function of the signal strength and of the aberration amplitude and we derive the achievable resolution for the resulting measurements. We then report on measured 3D aberration maps in human skin biopsies and mouse brain slices. From these data, we analyse the consequences of tissue structure and refractive index distribution on aberrations and imaging depth in normal and cleared tissue samples. The aberration maps allow the estimation of the typical aplanetism region size over which aberrations can be uniformly corrected. This method and data pave the way towards efficient correction strategies for tissue imaging applications. PMID:22876353

Elasticity mapping of tissue mimicking phantoms by remote palpation with a focused ultrasound beam and intensity autocorrelation measurements

NASA Astrophysics Data System (ADS)

Usha Devi, C.; Bharat Chandran, R. S.; Vasu, R. M.; Sood, A. K.

2007-05-01

We use a focused ultrasound beam to load a region of interest (ROI) in a tissue-mimicking phantom and read out the vibration amplitude of phantom particles from the modulation depth in the intensity autocorrelation of a coherent light beam that intercepted the ROI. The modulation depth, which is also affected by the local light absorption coefficient, which is employed in ultrasound assisted optical tomography, to read out absorption coefficient is greatly influenced by the vibration amplitude, depends to a great extend on local elasticity. We scan a plane in an elastography phantom with an inhomogeneous inclusion, in elasticity with the focused ultrasound and from the measured modulation depth variation create a qualitative map of the elasticity variation in the interrogated plane.

Creating unconventional geometric beams with large depth of field using double freeform-surface optics.

PubMed

Feng, Zexin; Froese, Brittany D; Huang, Chih-Yu; Ma, Donglin; Liang, Rongguang

2015-07-10

We consider here creation of an unconventional flattop beam with a large depth of field by employing double freeform optical surfaces. The output beam is designed with continuous variations from the flattop to almost zero near the edges to resist the influence of diffraction on its propagation. We solve this challenging problem by naturally incorporating an optimal transport map computation scheme for unconventional boundary conditions with a simultaneous point-by-point double surface construction procedure. We demonstrate experimentally the generation of a long-range propagated triangular beam through a plano-freeform lens pair fabricated by a diamond-tuning machine.

Depth-resolved imaging of capillary networks in retina and choroid using ultrahigh sensitive optical microangiography

PubMed Central

Wang, Ruikang K.; An, Lin; Francis, Peter; Wilson, David J.

2010-01-01

We demonstrate the depth-resolved and detailed ocular perfusion maps within retina and choroid can be obtained from an ultrahigh sensitive optical microangiography (OMAG). As opposed to the conventional OMAG, we apply the OMAG algorithm along the slow scanning axis to achieve the ultrahigh sensitive imaging to the slow flows within capillaries. We use an 840nm system operating at an imaging rate of 400 frames/sec that requires 3 sec to complete one 3D scan of ~3x3 mm2 area on retina. We show the superior imaging performance of OMAG to provide functional images of capillary level microcirculation at different land-marked depths within retina and choroid that correlate well with the standard retinal pathology. PMID:20436605

Joint optic disc and cup boundary extraction from monocular fundus images.

PubMed

Chakravarty, Arunava; Sivaswamy, Jayanthi

2017-08-01

Accurate segmentation of optic disc and cup from monocular color fundus images plays a significant role in the screening and diagnosis of glaucoma. Though optic cup is characterized by the drop in depth from the disc boundary, most existing methods segment the two structures separately and rely only on color and vessel kink based cues due to the lack of explicit depth information in color fundus images. We propose a novel boundary-based Conditional Random Field formulation that extracts both the optic disc and cup boundaries in a single optimization step. In addition to the color gradients, the proposed method explicitly models the depth which is estimated from the fundus image itself using a coupled, sparse dictionary trained on a set of image-depth map (derived from Optical Coherence Tomography) pairs. The estimated depth achieved a correlation coefficient of 0.80 with respect to the ground truth. The proposed segmentation method outperformed several state-of-the-art methods on five public datasets. The average dice coefficient was in the range of 0.87-0.97 for disc segmentation across three datasets and 0.83 for cup segmentation on the DRISHTI-GS1 test set. The method achieved a good glaucoma classification performance with an average AUC of 0.85 for five fold cross-validation on RIM-ONE v2. We propose a method to jointly segment the optic disc and cup boundaries by modeling the drop in depth between the two structures. Since our method requires a single fundus image per eye during testing it can be employed in the large-scale screening of glaucoma where expensive 3D imaging is unavailable. Copyright © 2017 Elsevier B.V. All rights reserved.

Evaluating the potential for remote bathymetric mapping of a turbid, sand-bed river: 2. Application to hyperspectral image data from the Platte River

USGS Publications Warehouse

Legleiter, C.J.; Kinzel, P.J.; Overstreet, B.T.

2011-01-01

This study examined the possibility of mapping depth from optical image data in turbid, sediment-laden channels. Analysis of hyperspectral images from the Platte River indicated that depth retrieval in these environments is feasible, but might not be highly accurate. Four methods of calibrating image-derived depth estimates were evaluated. The first involved extracting image spectra at survey point locations throughout the reach. These paired observations of depth and reflectance were subjected to optimal band ratio analysis (OBRA) to relate (R2 = 0.596) a spectrally based quantity to flow depth. Two other methods were based on OBRA of data from individual cross sections. A fourth strategy used ground-based reflectance measurements to derive an OBRA relation (R2 = 0.944) that was then applied to the image. Depth retrieval accuracy was assessed by visually inspecting cross sections and calculating various error metrics. Calibration via field spectroscopy resulted in a shallow bias but provided relative accuracies similar to image-based methods. Reach-aggregated OBRA was marginally superior to calibrations based on individual cross sections, and depth retrieval accuracy varied considerably along each reach. Errors were lower and observed versus predicted regression R2 values higher for a relatively simple, deeper site than a shallower, braided reach; errors were 1/3 and 1/2 the mean depth for the two reaches. Bathymetric maps were coherent and hydraulically reasonable, however, and might be more reliable than implied by numerical metrics. As an example application, linear discriminant analysis was used to produce a series of depth threshold maps for characterizing shallow-water habitat for roosting cranes. ?? 2011 by the American Geophysical Union.

Evaluating the potential for remote bathymetric mapping of a turbid, sand-bed river: 2. application to hyperspectral image data from the Platte River

USGS Publications Warehouse

Legleiter, Carl J.; Kinzel, Paul J.; Overstreet, Brandon T.

2011-01-01

This study examined the possibility of mapping depth from optical image data in turbid, sediment-laden channels. Analysis of hyperspectral images from the Platte River indicated that depth retrieval in these environments is feasible, but might not be highly accurate. Four methods of calibrating image-derived depth estimates were evaluated. The first involved extracting image spectra at survey point locations throughout the reach. These paired observations of depth and reflectance were subjected to optimal band ratio analysis (OBRA) to relate (R2 = 0.596) a spectrally based quantity to flow depth. Two other methods were based on OBRA of data from individual cross sections. A fourth strategy used ground-based reflectance measurements to derive an OBRA relation (R2 = 0.944) that was then applied to the image. Depth retrieval accuracy was assessed by visually inspecting cross sections and calculating various error metrics. Calibration via field spectroscopy resulted in a shallow bias but provided relative accuracies similar to image-based methods. Reach-aggregated OBRA was marginally superior to calibrations based on individual cross sections, and depth retrieval accuracy varied considerably along each reach. Errors were lower and observed versus predicted regression R2 values higher for a relatively simple, deeper site than a shallower, braided reach; errors were 1/3 and 1/2 the mean depth for the two reaches. Bathymetric maps were coherent and hydraulically reasonable, however, and might be more reliable than implied by numerical metrics. As an example application, linear discriminant analysis was used to produce a series of depth threshold maps for characterizing shallow-water habitat for roosting cranes.

Mapping the human atria with optical coherence tomography

NASA Astrophysics Data System (ADS)

Lye, Theresa H.; Gan, Yu; Hendon, Christine P.

2017-02-01

Atrial structure plays an important role in the mechanisms of atrial disease. However, detailed imaging of human atria remains limited due to many imaging modalities lacking sufficient resolution. We propose the use of optical coherence tomography (OCT), which has micrometer resolution and millimeter-scale imaging depth well-suited for the atria, combined with image stitching algorithms, to develop large, detailed atria image maps. Human atria samples (n = 7) were obtained under approved protocols from the National Disease Research Interchange (NDRI). One right atria sample was imaged using an ultrahigh-resolution spectral domain OCT system, with 5.52 and 2.72 μm lateral and axial resolution in air, respectively, and 1.78 mm imaging depth. Six left atria and five pulmonary vein samples were imaged using the spectral domain OCT system, Telesto I (Thorlabs GmbH, Germany) with 15 and 6.5 μm lateral and axial resolution in air, respectively, and 2.51 mm imaging depth. Overlapping image volumes were obtained from areas of the human left and right atria and the pulmonary veins. Regions of collagen, adipose, and myocardium could be identified within the OCT images. Image stitching was applied to generate fields of view with side dimensions up to about 3 cm. This study established steps towards mapping large regions of the human atria and pulmonary veins in high resolution using OCT.

Preoperative Mapping of Nonmelanoma Skin Cancer Using Spatial Frequency Domain and Ultrasound Imaging

PubMed Central

Rohrbach, Daniel J.; Muffoletto, Daniel; Huihui, Jonathan; Saager, Rolf; Keymel, Kenneth; Paquette, Anne; Morgan, Janet; Zeitouni, Nathalie; Sunar, Ulas

2014-01-01

Rationale and Objectives The treatment of nonmelanoma skin cancer (NMSC) is usually by surgical excision or Mohs micrographic surgery and alternatively may include photodynamic therapy (PDT). To guide surgery and to optimize PDT, information about the tumor structure, optical parameters, and vasculature is desired. Materials and Methods Spatial frequency domain imaging (SFDI) can map optical absorption, scattering, and fluorescence parameters that can enhance tumor contrast and quantify light and photosensitizer dose. High frequency ultrasound (HFUS) imaging can provide high-resolution tumor structure and depth, which is useful for both surgery and PDT planning. Results Here, we present preliminary results from our recently developed clinical instrument for patients with NMSC. We quantified optical absorption and scattering, blood oxygen saturation (StO2), and total hemoglobin concentration (THC) with SFDI and lesion thickness with ultrasound. These results were compared to histological thickness of excised tumor sections. Conclusions SFDI quantified optical parameters with high precision, and multiwavelength analysis enabled 2D mappings of tissue StO2 and THC. HFUS quantified tumor thickness that correlated well with histology. The results demonstrate the feasibility of the instrument for noninvasive mapping of optical, physiological, and ultrasound contrasts in human skin tumors for surgery guidance and therapy planning. PMID:24439339

Nine martian years of dust optical depth observations: A reference dataset

NASA Astrophysics Data System (ADS)

Montabone, Luca; Forget, Francois; Kleinboehl, Armin; Kass, David; Wilson, R. John; Millour, Ehouarn; Smith, Michael; Lewis, Stephen; Cantor, Bruce; Lemmon, Mark; Wolff, Michael

2016-07-01

We present a multi-annual reference dataset of the horizontal distribution of airborne dust from martian year 24 to 32 using observations of the martian atmosphere from April 1999 to June 2015 made by the Thermal Emission Spectrometer (TES) aboard Mars Global Surveyor, the Thermal Emission Imaging System (THEMIS) aboard Mars Odyssey, and the Mars Climate Sounder (MCS) aboard Mars Reconnaissance Orbiter (MRO). Our methodology to build the dataset works by gridding the available retrievals of column dust optical depth (CDOD) from TES and THEMIS nadir observations, as well as the estimates of this quantity from MCS limb observations. The resulting (irregularly) gridded maps (one per sol) were validated with independent observations of CDOD by PanCam cameras and Mini-TES spectrometers aboard the Mars Exploration Rovers "Spirit" and "Opportunity", by the Surface Stereo Imager aboard the Phoenix lander, and by the Compact Reconnaissance Imaging Spectrometer for Mars aboard MRO. Finally, regular maps of CDOD are produced by spatially interpolating the irregularly gridded maps using a kriging method. These latter maps are used as dust scenarios in the Mars Climate Database (MCD) version 5, and are useful in many modelling applications. The two datasets (daily irregularly gridded maps and regularly kriged maps) for the nine available martian years are publicly available as NetCDF files and can be downloaded from the MCD website at the URL: http://www-mars.lmd.jussieu.fr/mars/dust_climatology/index.html

Smoke from California's Sand and Soberanes Fires

Atmospheric Science Data Center

2016-12-30

...   At right is a map of aerosol optical depth, a quantitative measure of the smoke abundance in the atmosphere, derived from the ... Maryland. The MISR data were obtained from the NASA Langley Research Center Atmospheric Science Data Center, Hampton, Virginia. JPL is a ...

3D topology of orientation columns in visual cortex revealed by functional optical coherence tomography.

PubMed

Nakamichi, Yu; Kalatsky, Valery A; Watanabe, Hideyuki; Sato, Takayuki; Rajagopalan, Uma Maheswari; Tanifuji, Manabu

2018-04-01

Orientation tuning is a canonical neuronal response property of six-layer visual cortex that is encoded in pinwheel structures with center orientation singularities. Optical imaging of intrinsic signals enables us to map these surface two-dimensional (2D) structures, whereas lack of appropriate techniques has not allowed us to visualize depth structures of orientation coding. In the present study, we performed functional optical coherence tomography (fOCT), a technique capable of acquiring a 3D map of the intrinsic signals, to study the topology of orientation coding inside the cat visual cortex. With this technique, for the first time, we visualized columnar assemblies in orientation coding that had been predicted from electrophysiological recordings. In addition, we found that the columnar structures were largely distorted around pinwheel centers: center singularities were not rigid straight lines running perpendicularly to the cortical surface but formed twisted string-like structures inside the cortex that turned and extended horizontally through the cortex. Looping singularities were observed with their respective termini accessing the same cortical surface via clockwise and counterclockwise orientation pinwheels. These results suggest that a 3D topology of orientation coding cannot be fully anticipated from 2D surface measurements. Moreover, the findings demonstrate the utility of fOCT as an in vivo mesoscale imaging method for mapping functional response properties of cortex in the depth axis. NEW & NOTEWORTHY We used functional optical coherence tomography (fOCT) to visualize three-dimensional structure of the orientation columns with millimeter range and micrometer spatial resolution. We validated vertically elongated columnar structure in iso-orientation domains. The columnar structure was distorted around pinwheel centers. An orientation singularity formed a string with tortuous trajectories inside the cortex and connected clockwise and counterclockwise pinwheel centers in the surface orientation map. The results were confirmed by comparisons with conventional optical imaging and electrophysiological recordings.

Reliability of Entire Corneal Thickness Mapping in Normal Post-Laser in situ Keratomileusis and Keratoconus Eyes Using Long Scan Depth Spectral Domain Optical Coherence Tomography.

PubMed

Xu, Zhe; Chen, Sisi; Yang, Chun; Huang, Shenghai; Shen, Meixiao; Wang, Yuanyuan

2018-01-01

To investigate the repeatability and reproducibility of mapping the entire corneal thickness using spectral domain optical coherence tomography (SD-OCT). Thirty normal eyes, 30 post-laser in situ keratomileusis (LASIK) surgery eyes, and 30 keratoconus eyes were analyzed. A custom-built long scan depth SD-OCT device was used to obtain entire corneal images. Ten-millimeter-diameter corneal thickness maps were generated by an automated segmentation algorithm. Intraclass correlation coefficients of repeatability (ICC1) and reproducibility (ICC2), and coefficients of repeatability (CoR1) and reproducibility (CoR2), were calculated to quantify the precision and accuracy of corneal pachymetry measurements using the Bland-Altman method. For SD-OCT measurements in healthy subjects, CoR1 and CoR2 were less than 5.00 and 5.53 μm. ICC1 and ICC2 were more than 0.997 and 0.996. For SD-OCT measurements in LASIK patients, CoR1 and CoR2 were less than 5.09 and 5.34 μm. ICC1 and ICC2 were more than 0.997 and 0.996. For SD-OCT measurements in keratoconus patients, CoR1 and CoR2 were less than 11.57 and 10.92 μm. ICC1 and ICC2 were more than 0.995 and 0.996. The measurements of corneal pachymetric mapping by long scan depth SD-OCT can be assessed over the entire corneal area with good repeatability and reproducibility. © 2017 S. Karger AG, Basel.

Morphologies and optical and electrical properties of InGaN/GaN micro-square array light-emitting diode chips.

PubMed

Han, Dan; Ma, Shufang; Jia, Zhigang; Liu, Peizhi; Jia, Wei; Shang, Lin; Zhai, Guangmei; Xu, Bingshe

2018-04-10

InGaN/GaN micro-square array light-emitting diode (LED) chips (micro-chips) have been prepared via the focused ion beam (FIB) etching technique, which can not only reduce ohmic contact degradation but also control the aspect ratio precisely in three-dimensional (3D) structure LED (3D-LED) device fabrication. The effects of FIB beam current and micro-square array depth on morphologies and optical and electrical properties of the micro-chips have been studied. Our results show that sidewall surface morphology and optical and electrical properties of the micro-chips degrade with increased beam current. After potassium hydroxide etching with different times, an optimal current-voltage and luminescence performance can be obtained. Combining the results of cathodoluminescence mappings and light output-current characteristics, the light extraction efficiency of the micro-chips is reduced as FIB etch depth increases. The mechanisms of micro-square depth on light extraction have been revealed by 3D finite difference time domain.

Local Time Variation of Water Ice Clouds on Mars as Observed by TES During Aerobraking.

NASA Astrophysics Data System (ADS)

AlJanaahi, A. A.; AlShamsi, M. R.; Smith, M. D.; Altunaiji, E. S.; Edwards, C. S.

2016-12-01

The large elliptical orbit during Mars Global Surveyor aerobraking enabled sampling the martian atmosphere over many local times. The Thermal Emission Spectrometer (TES) aerobraking spectra were taken between Mars Year 23, Ls=180° and Mars Year 24, Ls=30°. These early data from before the main "mapping" part of the mission have been mostly overlooked, and relatively little analysis has been done with them. These datasets have not been used before to study local time variation. Radiative transfer modeling is used to fit the spectra to retrieve surface and atmospheric temperature, and dust and water ice optical depths. Retrievals show significant and systematic variation in water ice cloud optical depth as a function of local time. Cloud optical depth is higher in the early morning (before 9:00) and in the evening (after 17:00) for all seasons observed (Ls=180°-30°). Clouds form consistently in the Tyrrhena region and in the area around Tharsis.

Classification of bottom composition and bathymetry of shallow waters by passive remote sensing

NASA Astrophysics Data System (ADS)

Spitzer, D.; Dirks, R. W. J.

The use of remote sensing data in the development of algorithms to remove the influence of the watercolumn on upwelling optical signals when mapping the bottom depth and composition in shallow waters. Calculations relating the reflectance spectra to the parameters of the watercolumn and the diverse bottom types are performed and measurements of the underwater reflection coefficient of sandy, mud, and vegetation-type seabottoms are taken. The two-flow radiative transfer model is used. Reflectances within the spectral bands of the Landsat MSS, the Landsat TM, SPOT HVR, and the TIROS-N series AVHRR were computed in order to develop appropriate algorithms suitable for the bottom depth and type mapping. Bottom depth and features appear to be observable down to 3-20 m depending on the water composition and bottom type.

Three-dimensional fluorescence-enhanced optical tomography using a hand-held probe based imaging system

PubMed Central

Ge, Jiajia; Zhu, Banghe; Regalado, Steven; Godavarty, Anuradha

2008-01-01

Hand-held based optical imaging systems are a recent development towards diagnostic imaging of breast cancer. To date, all the hand-held based optical imagers are used to perform only surface mapping and target localization, but are not capable of demonstrating tomographic imaging. Herein, a novel hand-held probe based optical imager is developed towards three-dimensional (3-D) optical tomography studies. The unique features of this optical imager, which primarily consists of a hand-held probe and an intensified charge coupled device detector, are its ability to; (i) image large tissue areas (5×10 sq. cm) in a single scan, (ii) perform simultaneous multiple point illumination and collection, thus reducing the overall imaging time; and (iii) adapt to varying tissue curvatures, from a flexible probe head design. Experimental studies are performed in the frequency domain on large slab phantoms (∼650 ml) using fluorescence target(s) under perfect uptake (1:0) contrast ratios, and varying target depths (1–2 cm) and X-Y locations. The effect of implementing simultaneous over sequential multiple point illumination towards 3-D tomography is experimentally demonstrated. The feasibility of 3-D optical tomography studies has been demonstrated for the first time using a hand-held based optical imager. Preliminary fluorescence-enhanced optical tomography studies are able to reconstruct 0.45 ml target(s) located at different target depths (1–2 cm). However, the depth recovery was limited as the actual target depth increased, since only reflectance measurements were acquired. Extensive tomography studies are currently carried out to determine the resolution and performance limits of the imager on flat and curved phantoms. PMID:18697559

Three-dimensional fluorescence-enhanced optical tomography using a hand-held probe based imaging system.

PubMed

Ge, Jiajia; Zhu, Banghe; Regalado, Steven; Godavarty, Anuradha

2008-07-01

Hand-held based optical imaging systems are a recent development towards diagnostic imaging of breast cancer. To date, all the hand-held based optical imagers are used to perform only surface mapping and target localization, but are not capable of demonstrating tomographic imaging. Herein, a novel hand-held probe based optical imager is developed towards three-dimensional (3-D) optical tomography studies. The unique features of this optical imager, which primarily consists of a hand-held probe and an intensified charge coupled device detector, are its ability to; (i) image large tissue areas (5 x 10 sq. cm) in a single scan, (ii) perform simultaneous multiple point illumination and collection, thus reducing the overall imaging time; and (iii) adapt to varying tissue curvatures, from a flexible probe head design. Experimental studies are performed in the frequency domain on large slab phantoms (approximately 650 ml) using fluorescence target(s) under perfect uptake (1:0) contrast ratios, and varying target depths (1-2 cm) and X-Y locations. The effect of implementing simultaneous over sequential multiple point illumination towards 3-D tomography is experimentally demonstrated. The feasibility of 3-D optical tomography studies has been demonstrated for the first time using a hand-held based optical imager. Preliminary fluorescence-enhanced optical tomography studies are able to reconstruct 0.45 ml target(s) located at different target depths (1-2 cm). However, the depth recovery was limited as the actual target depth increased, since only reflectance measurements were acquired. Extensive tomography studies are currently carried out to determine the resolution and performance limits of the imager on flat and curved phantoms.

Point-of-care instrument for monitoring tissue health during skin graft repair

NASA Astrophysics Data System (ADS)

Gurjar, R. S.; Seetamraju, M.; Zhang, J.; Feinberg, S. E.; Wolf, D. E.

2011-06-01

We have developed the necessary theoretical framework and the basic instrumental design parameters to enable mapping of subsurface blood dynamics and tissue oxygenation for patients undergoing skin graft procedures. This analysis forms the basis for developing a simple patch geometry, which can be used to map by diffuse optical techniques blood flow velocity and tissue oxygenation as a function of depth in subsurface tissue.skin graft, diffuse correlation analysis, oxygen saturation.

Calibration and accuracy analysis of a focused plenoptic camera

NASA Astrophysics Data System (ADS)

Zeller, N.; Quint, F.; Stilla, U.

2014-08-01

In this article we introduce new methods for the calibration of depth images from focused plenoptic cameras and validate the results. We start with a brief description of the concept of a focused plenoptic camera and how from the recorded raw image a depth map can be estimated. For this camera, an analytical expression of the depth accuracy is derived for the first time. In the main part of the paper, methods to calibrate a focused plenoptic camera are developed and evaluated. The optical imaging process is calibrated by using a method which is already known from the calibration of traditional cameras. For the calibration of the depth map two new model based methods, which make use of the projection concept of the camera are developed. These new methods are compared to a common curve fitting approach, which is based on Taylor-series-approximation. Both model based methods show significant advantages compared to the curve fitting method. They need less reference points for calibration than the curve fitting method and moreover, supply a function which is valid in excess of the range of calibration. In addition the depth map accuracy of the plenoptic camera was experimentally investigated for different focal lengths of the main lens and is compared to the analytical evaluation.

Dynamic contrast-enhanced diffuse optical tomography (DCE-DOT): experimental validation with a dynamic phantom

NASA Astrophysics Data System (ADS)

Burcin Unlu, Mehmet; Lin, Yuting; Gulsen, Gultekin

2009-11-01

Dynamic contrast-enhanced diffuse optical tomography (DCE-DOT) can provide spatially resolved enhancement kinetics of an optical contrast agent. We undertook a systematic phantom study to evaluate the effects of the geometrical parameters such as the depth and size of the inclusion as well as the optical parameters of the background on the recovered enhancement kinetics of the most commonly used optical contrast agent, indocyanine green (ICG). For this purpose a computer-controlled dynamic phantom was constructed. An ICG-intralipid-water mixture was circulated through the inclusions while the DCE-DOT measurements were acquired with a temporal resolution of 16 s. The same dynamic study was repeated using inclusions of different sizes located at different depths. In addition to this, the effect of non-scattering regions was investigated by placing a second inclusion filled with water in the background. The phantom studies confirmed that although the peak enhancement varied substantially for each case, the recovered injection and dilution rates obtained from the percentage enhancement maps agreed within 15% independent of not only the depth and the size of the inclusion but also the presence of a non-scattering region in the background. Although no internal structural information was used in these phantom studies, it may be necessary to use it for small objects buried deep in tissue. However, the different contrast mechanisms of optical and other imaging modalities as well as imperfect co-registration between both modalities may lead to potential errors in the structural a priori. Therefore, the effect of erroneous selection of structural priors was investigated as the final step. Again, the injection and dilution rates obtained from the percentage enhancement maps were also immune to the systematic errors introduced by erroneous selection of the structural priors, e.g. choosing the diameter of the inclusion 20% smaller increased the peak enhancement 60% but changed the injection and dilution rates only less than 10%.

Visualization of the 3-D topography of the optic nerve head through a passive stereo vision model

NASA Astrophysics Data System (ADS)

Ramirez, Juan M.; Mitra, Sunanda; Morales, Jose

1999-01-01

This paper describes a system for surface recovery and visualization of the 3D topography of the optic nerve head, as support of early diagnosis and follow up to glaucoma. In stereo vision, depth information is obtained from triangulation of corresponding points in a pair of stereo images. In this paper, the use of the cepstrum transformation as a disparity measurement technique between corresponding windows of different block sizes is described. This measurement process is embedded within a coarse-to-fine depth-from-stereo algorithm, providing an initial range map with the depth information encoded as gray levels. These sparse depth data are processed through a cubic B-spline interpolation technique in order to obtain a smoother representation. This methodology is being especially refined to be used with medical images for clinical evaluation of some eye diseases such as open angle glaucoma, and is currently under testing for clinical evaluation and analysis of reproducibility and accuracy.

Geochemical and spectral characterization of naturally altered rock surfaces

NASA Technical Reports Server (NTRS)

Chang, L. L. Y.; Sommer, S. E.; Buckingham, W. F.

1981-01-01

The possibility of using the visible-near infrared region for compositional analysis of remotely sensed rock surfaces is studied. This would allow mapping rock type both on the Earth's surface and on other planetary surfaces. Reflectance spectroscopy, economic geology, optical depth determination, and X-ray diffraction mineralogy are discussed.

Fusion of 3D laser scanner and depth images for obstacle recognition in mobile applications

NASA Astrophysics Data System (ADS)

Budzan, Sebastian; Kasprzyk, Jerzy

2016-02-01

The problem of obstacle detection and recognition or, generally, scene mapping is one of the most investigated problems in computer vision, especially in mobile applications. In this paper a fused optical system using depth information with color images gathered from the Microsoft Kinect sensor and 3D laser range scanner data is proposed for obstacle detection and ground estimation in real-time mobile systems. The algorithm consists of feature extraction in the laser range images, processing of the depth information from the Kinect sensor, fusion of the sensor information, and classification of the data into two separate categories: road and obstacle. Exemplary results are presented and it is shown that fusion of information gathered from different sources increases the effectiveness of the obstacle detection in different scenarios, and it can be used successfully for road surface mapping.

Pinatubo Global- to Micro-Scale Evolution: A Unified Picture from Space, Air, and Ground Measurements

NASA Technical Reports Server (NTRS)

Russell, Philip B.; Livingston, J. M.; Puesche, R. F.; Pollack, J. B.; Brooks, S.; Hamill, P.; Hughes, J.; Thomason, L.; Stowe, L.; Deshler, T.;

Integrated photoacoustic, ultrasound and fluorescence platform for diagnostic medical imaging-proof of concept study with a tissue mimicking phantom.

PubMed

James, Joseph; Murukeshan, Vadakke Matham; Woh, Lye Sun

2014-07-01

The structural and molecular heterogeneities of biological tissues demand the interrogation of the samples with multiple energy sources and provide visualization capabilities at varying spatial resolution and depth scales for obtaining complementary diagnostic information. A novel multi-modal imaging approach that uses optical and acoustic energies to perform photoacoustic, ultrasound and fluorescence imaging at multiple resolution scales from the tissue surface and depth is proposed in this paper. The system comprises of two distinct forms of hardware level integration so as to have an integrated imaging system under a single instrumentation set-up. The experimental studies show that the system is capable of mapping high resolution fluorescence signatures from the surface, optical absorption and acoustic heterogeneities along the depth (>2cm) of the tissue at multi-scale resolution (<1µm to <0.5mm).

Ultrafast acousto-plasmonics in gold nanoparticle superlattices

NASA Astrophysics Data System (ADS)

Ruello, P.; Ayouch, A.; Vaudel, G.; Pezeril, T.; Delorme, N.; Sato, S.; Kimura, K.; Gusev, V. E.

2015-11-01

We report the investigation of the generation and detection of GHz coherent acoustic phonons in plasmonic gold nanoparticle superlattices (NPSs). The experiments have been performed with an optical femtosecond pump-probe scheme across the optical plasmon resonance of the superlattice. Our experiments allow us to estimate first the fundamental mechanical parameters such as the collective elastic response (sound velocity) of the NPS and the nanocontact elastic stiffness. Furthermore, it appears that the light-induced coherent acoustic-phonon pulse has a typical in-depth spatial extension of about 45 nm which is roughly four times the optical skin depth in gold. The modeling of the transient optical reflectivity indicates that the mechanism of phonons generation is achieved through ultrafast heating of the NPS assisted by light excitation of the volume plasmon polariton. Based on these results, we demonstrate that it is possible to map the photon-electron-phonon interaction in subwavelength nanostructures which, in particular, provides insights on the fundamental properties of these nanometamaterials.

Using Optical Coherence Tomography to Reveal the Hidden History of The Landsdowne Virgin of the Yarnwinder by Leonardo da Vinci and Studio.

PubMed

Targowski, Piotr; Iwanicka, Magdalena; Sylwestrzak, Marcin; Frosinini, Cecilia; Striova, Jana; Fontana, Raffaella

2018-06-18

Optical coherence tomography (OCT) was used for non-invasive examination of a well-known, yet complex, painting from the studio of Leonardo da Vinci in combination with routine imaging in various bands of electromagnetic radiation. In contrast with these techniques, OCT provides depth-resolved information. Three post-processing modalities were explored: cross-sectional views, maps of scattering from given depths, and their 3D models. Some hidden alterations of the painting owing to past restorations were traced: retouching and overpainting with their positioning within varnish layers as well as indications of a former transfer to canvas. © 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Dust Storm Signatures in Global Ionosphere Map of GPS Total Electron Content

NASA Astrophysics Data System (ADS)

Lin, Fang-Tse; Shih, Ai-Ling; Liu, Jann-Yenq; Kuo, Cheng-Ling; Lin, Tang-Huang; Lien, Wei-Hung

2016-04-01

In this paper both MODIS data and GIM (global ionosphere map) TEC (total electron content) as well as numerical simulations are used to study ionospheric dust storm effects in May 2008. The aerosol optical depth (AOD) and the LTT (latitude-time-TEC) along the Sahara longitude simultaneously reach their maximum values on 28 May 2008. The LLT (latitude-longitude-TEC) map specifically and significantly increases over the Sahara region on 28 May 2008. The simulation suggests that the dust storm may change the atmospheric conductivity, which in turn modifies the GIM TEC over the Sahara area.

Atmospheric and surface temperatures and airborne dust amounts during late southern summer from Mariner 9 IRIS data

NASA Technical Reports Server (NTRS)

Santee, M.; Crisp, D.

1992-01-01

The temperature structure and dust loading of the Martian atmosphere are investigated using thermal emission spectra recorded in 1972 by the Mariner 9 infrared interferometer spectrometer (IRIS). The analysis focuses on a subset of data consisting of approximately 2400 spectra obtained near the end of the southern summer season (L(sub s) equal to 343 deg to 348 deg), after the global dust storm had largely abated and airborne dust amounts were subsiding to background values. Simultaneous retrieval of the vertical distribution of both atmospheric temperature and dust optical depth is accomplished through an iterative procedure which is performed on each individual spectrum. The atmospheric transmittances are calculated using a Voigt quasi-random band model, which includes absorption by CO2 and dust, but neglects the effects of multiple scattering. Vertical profiles of temperature and dust optical depth are obtained using modified algorithms. These profiles are used to construct global maps of temperature and dust optical depth as functions of latitude (+/- 90 deg), altitude (approximately 0-50 km), and local time of day.

DeepSurveyCam--A Deep Ocean Optical Mapping System.

PubMed

Kwasnitschka, Tom; Köser, Kevin; Sticklus, Jan; Rothenbeck, Marcel; Weiß, Tim; Wenzlaff, Emanuel; Schoening, Timm; Triebe, Lars; Steinführer, Anja; Devey, Colin; Greinert, Jens

2016-01-28

Underwater photogrammetry and in particular systematic visual surveys of the deep sea are by far less developed than similar techniques on land or in space. The main challenges are the rough conditions with extremely high pressure, the accessibility of target areas (container and ship deployment of robust sensors, then diving for hours to the ocean floor), and the limitations of localization technologies (no GPS). The absence of natural light complicates energy budget considerations for deep diving flash-equipped drones. Refraction effects influence geometric image formation considerations with respect to field of view and focus, while attenuation and scattering degrade the radiometric image quality and limit the effective visibility. As an improvement on the stated issues, we present an AUV-based optical system intended for autonomous visual mapping of large areas of the seafloor (square kilometers) in up to 6000 m water depth. We compare it to existing systems and discuss tradeoffs such as resolution vs. mapped area and show results from a recent deployment with 90,000 mapped square meters of deep ocean floor.

Antarctic Ultraviolet Radiation Climatology from Total Ozone Mapping Spectrometer Data

NASA Technical Reports Server (NTRS)

Lubin, Dan

2004-01-01

This project has successfully produced a climatology of local noon spectral surface irradiance covering the Antarctic continent and the Southern Ocean, the spectral interval 290-700 nm (UV-A, UV-B, and photosynthetically active radiation, PAR), and the entire sunlit part of the year for November 1979-December 1999. Total Ozone Mapping Spectrometer (TOMS) data were used to specify column ozone abundance and UV-A (360- or 380-nm) reflectivity, and passive microwave (MW) sea ice concentrations were used to specify the surface albedo over the Southern Ocean. For this latter task, sea ice concentration retrievals from the Nimbus-7 Scanning Multichannel Microwave Radiometer (SMMR) and its successor, the Defense Meteorological Satellite Program (DMSP) Special Sensor Microwave Imager (SSM/I) were identified with ultraviolet/visible-wavelength albedos based on an empirical TOMS/MW parameterization developed for this purpose (Lubin and Morrow, 2001). The satellite retrievals of surface albedo and UV-A reflectivity were used in a delta-Eddington radiative transfer model to estimate cloud effective optical depth. These optical depth estimates were then used along with the total ozone and surface albedo to calculate the downwelling spectral UV and PAR irradiance at the surface. These spectral irradiance maps were produced for every usable day of TOMS data between 1979-1999 (every other day early in the TOMS program, daily later on).

Automatic characterization and segmentation of human skin using three-dimensional optical coherence tomography

NASA Astrophysics Data System (ADS)

Hori, Yasuaki; Yasuno, Yoshiaki; Sakai, Shingo; Matsumoto, Masayuki; Sugawara, Tomoko; Madjarova, Violeta; Yamanari, Masahiro; Makita, Shuichi; Yasui, Takeshi; Araki, Tsutomu; Itoh, Masahide; Yatagai, Toyohiko

2006-03-01

A set of fully automated algorithms that is specialized for analyzing a three-dimensional optical coherence tomography (OCT) volume of human skin is reported. The algorithm set first determines the skin surface of the OCT volume, and a depth-oriented algorithm provides the mean epidermal thickness, distribution map of the epidermis, and a segmented volume of the epidermis. Subsequently, an en face shadowgram is produced by an algorithm to visualize the infundibula in the skin with high contrast. The population and occupation ratio of the infundibula are provided by a histogram-based thresholding algorithm and a distance mapping algorithm. En face OCT slices at constant depths from the sample surface are extracted, and the histogram-based thresholding algorithm is again applied to these slices, yielding a three-dimensional segmented volume of the infundibula. The dermal attenuation coefficient is also calculated from the OCT volume in order to evaluate the skin texture. The algorithm set examines swept-source OCT volumes of the skins of several volunteers, and the results show the high stability, portability and reproducibility of the algorithm.

Refocusing distance of a standard plenoptic camera.

PubMed

Hahne, Christopher; Aggoun, Amar; Velisavljevic, Vladan; Fiebig, Susanne; Pesch, Matthias

2016-09-19

Recent developments in computational photography enabled variation of the optical focus of a plenoptic camera after image exposure, also known as refocusing. Existing ray models in the field simplify the camera's complexity for the purpose of image and depth map enhancement, but fail to satisfyingly predict the distance to which a photograph is refocused. By treating a pair of light rays as a system of linear functions, it will be shown in this paper that its solution yields an intersection indicating the distance to a refocused object plane. Experimental work is conducted with different lenses and focus settings while comparing distance estimates with a stack of refocused photographs for which a blur metric has been devised. Quantitative assessments over a 24 m distance range suggest that predictions deviate by less than 0.35 % in comparison to an optical design software. The proposed refocusing estimator assists in predicting object distances just as in the prototyping stage of plenoptic cameras and will be an essential feature in applications demanding high precision in synthetic focus or where depth map recovery is done by analyzing a stack of refocused photographs.

Planck early results. XXV. Thermal dust in nearby molecular clouds

NASA Astrophysics Data System (ADS)

Planck Collaboration; Abergel, A.; Ade, P. A. R.; Aghanim, N.; Arnaud, M.; Ashdown, M.; Aumont, J.; Baccigalupi, C.; Balbi, A.; Banday, A. J.; Barreiro, R. B.; Bartlett, J. G.; Battaner, E.; Benabed, K.; Benoît, A.; Bernard, J.-P.; Bersanelli, M.; Bhatia, R.; Bock, J. J.; Bonaldi, A.; Bond, J. R.; Borrill, J.; Bouchet, F. R.; Boulanger, F.; Bucher, M.; Burigana, C.; Cabella, P.; Cardoso, J.-F.; Catalano, A.; Cayón, L.; Challinor, A.; Chamballu, A.; Chiang, L.-Y.; Chiang, C.; Christensen, P. R.; Clements, D. L.; Colombi, S.; Couchot, F.; Coulais, A.; Crill, B. P.; Cuttaia, F.; Danese, L.; Davies, R. D.; Davis, R. J.; de Bernardis, P.; de Gasperis, G.; de Rosa, A.; de Zotti, G.; Delabrouille, J.; Delouis, J.-M.; Désert, F.-X.; Dickinson, C.; Dobashi, K.; Donzelli, S.; Doré, O.; Dörl, U.; Douspis, M.; Dupac, X.; Efstathiou, G.; Enßlin, T. A.; Eriksen, H. K.; Finelli, F.; Forni, O.; Frailis, M.; Franceschi, E.; Galeotta, S.; Ganga, K.; Giard, M.; Giardino, G.; Giraud-Héraud, Y.; González-Nuevo, J.; Górski, K. M.; Gratton, S.; Gregorio, A.; Gruppuso, A.; Guillet, V.; Hansen, F. K.; Harrison, D.; Henrot-Versillé, S.; Herranz, D.; Hildebrandt, S. R.; Hivon, E.; Hobson, M.; Holmes, W. A.; Hovest, W.; Hoyland, R. J.; Huffenberger, K. M.; Jaffe, A. H.; Jones, A.; Jones, W. C.; Juvela, M.; Keihänen, E.; Keskitalo, R.; Kisner, T. S.; Kneissl, R.; Knox, L.; Kurki-Suonio, H.; Lagache, G.; Lamarre, J.-M.; Lasenby, A.; Laureijs, R. J.; Lawrence, C. R.; Leach, S.; Leonardi, R.; Leroy, C.; Linden-Vørnle, M.; López-Caniego, M.; Lubin, P. M.; Macías-Pérez, J. F.; MacTavish, C. J.; Maffei, B.; Mandolesi, N.; Mann, R.; Maris, M.; Marshall, D. J.; Martin, P.; Martínez-González, E.; Masi, S.; Matarrese, S.; Matthai, F.; Mazzotta, P.; McGehee, P.; Meinhold, P. R.; Melchiorri, A.; Mendes, L.; Mennella, A.; Mitra, S.; Miville-Deschênes, M.-A.; Moneti, A.; Montier, L.; Morgante, G.; Mortlock, D.; Munshi, D.; Murphy, A.; Naselsky, P.; Natoli, P.; Netterfield, C. B.; Nørgaard-Nielsen, H. U.; Noviello, F.; Novikov, D.; Novikov, I.; Osborne, S.; Pajot, F.; Paladini, R.; Pasian, F.; Patanchon, G.; Perdereau, O.; Perotto, L.; Perrotta, F.; Piacentini, F.; Piat, M.; Plaszczynski, S.; Pointecouteau, E.; Polenta, G.; Ponthieu, N.; Poutanen, T.; Prézeau, G.; Prunet, S.; Puget, J.-L.; Reach, W. T.; Rebolo, R.; Reinecke, M.; Renault, C.; Ricciardi, S.; Riller, T.; Ristorcelli, I.; Rocha, G.; Rosset, C.; Rubiño-Martín, J. A.; Rusholme, B.; Sandri, M.; Santos, D.; Savini, G.; Scott, D.; Seiffert, M. D.; Shellard, P.; Smoot, G. F.; Starck, J.-L.; Stivoli, F.; Stolyarov, V.; Sudiwala, R.; Sygnet, J.-F.; Tauber, J. A.; Terenzi, L.; Toffolatti, L.; Tomasi, M.; Torre, J.-P.; Tristram, M.; Tuovinen, J.; Umana, G.; Valenziano, L.; Verstraete, L.; Vielva, P.; Villa, F.; Vittorio, N.; Wade, L. A.; Wandelt, B. D.; Yvon, D.; Zacchei, A.; Zonca, A.

2011-12-01

Planck allows unbiased mapping of Galactic sub-millimetre and millimetre emission from the most diffuse regions to the densest parts of molecular clouds. We present an early analysis of the Taurus molecular complex, on line-of-sight-averaged data and without component separation. The emission spectrum measured by Planck and IRAS can be fitted pixel by pixel using a single modified blackbody. Some systematic residuals are detected at 353 GHz and 143 GHz, with amplitudes around -7% and +13%, respectively, indicating that the measured spectra are likely more complex than a simple modified blackbody. Significant positive residuals are also detected in the molecular regions and in the 217 GHz and 100 GHz bands, mainly caused by the contribution of the J = 2 → 1 and J = 1 → 0 12CO and 13CO emission lines. We derive maps of the dust temperature T, the dust spectral emissivity index β, and the dust optical depth at 250 μm τ250. The temperature map illustrates the cooling of the dust particles in thermal equilibrium with the incident radiation field, from 16 - 17 K in the diffuse regions to 13 - 14 K in the dense parts. The distribution of spectral indices is centred at 1.78, with a standard deviation of 0.08 and a systematic error of 0.07. We detect a significant T - β anti-correlation. The dust optical depth map reveals the spatial distribution of the column density of the molecular complex from the densest molecular regions to the faint diffuse regions. We use near-infrared extinction and Hi data at 21-cm to perform a quantitative analysis of the spatial variations of the measured dust optical depth at 250 μm per hydrogen atom τ250/NH. We report an increase of τ250/NH by a factor of about 2 between the atomic phase and the molecular phase, which has a strong impact on the equilibrium temperature of the dust particles. Corresponding author: A. Abergel, e-mail: alain.abergel@ias.u-psud.fr

Bathymetric mapping of submarine sand waves using multiangle sun glitter imagery: a case of the Taiwan Banks with ASTER stereo imagery

NASA Astrophysics Data System (ADS)

Zhang, Hua-guo; Yang, Kang; Lou, Xiu-lin; Li, Dong-ling; Shi, Ai-qin; Fu, Bin

2015-01-01

Submarine sand waves are visible in optical sun glitter remote sensing images and multiangle observations can provide valuable information. We present a method for bathymetric mapping of submarine sand waves using multiangle sun glitter information from Advanced Spaceborne Thermal Emission and Reflection Radiometer stereo imagery. Based on a multiangle image geometry model and a sun glitter radiance transfer model, sea surface roughness is derived using multiangle sun glitter images. These results are then used for water depth inversions based on the Alpers-Hennings model, supported by a few true depth data points (sounding data). Case study results show that the inversion and true depths match well, with high-correlation coefficients and root-mean-square errors from 1.45 to 2.46 m, and relative errors from 5.48% to 8.12%. The proposed method has some advantages over previous methods in that it requires fewer true depth data points, it does not require environmental parameters or knowledge of sand-wave morphology, and it is relatively simple to operate. On this basis, we conclude that this method is effective in mapping submarine sand waves and we anticipate that it will also be applicable to other similar topography types.

Axial resolution improvement in spectral domain optical coherence tomography using a depth-adaptive maximum-a-posterior framework

NASA Astrophysics Data System (ADS)

Boroomand, Ameneh; Tan, Bingyao; Wong, Alexander; Bizheva, Kostadinka

2015-03-01

The axial resolution of Spectral Domain Optical Coherence Tomography (SD-OCT) images degrades with scanning depth due to the limited number of pixels and the pixel size of the camera, any aberrations in the spectrometer optics and wavelength dependent scattering and absorption in the imaged object [1]. Here we propose a novel algorithm which compensates for the blurring effect of these factors of the depth-dependent axial Point Spread Function (PSF) in SDOCT images. The proposed method is based on a Maximum A Posteriori (MAP) reconstruction framework which takes advantage of a Stochastic Fully Connected Conditional Random Field (SFCRF) model. The aim is to compensate for the depth-dependent axial blur in SD-OCT images and simultaneously suppress the speckle noise which is inherent to all OCT images. Applying the proposed depth-dependent axial resolution enhancement technique to an OCT image of cucumber considerably improved the axial resolution of the image especially at higher imaging depths and allowed for better visualization of cellular membrane and nuclei. Comparing the result of our proposed method with the conventional Lucy-Richardson deconvolution algorithm clearly demonstrates the efficiency of our proposed technique in better visualization and preservation of fine details and structures in the imaged sample, as well as better speckle noise suppression. This illustrates the potential usefulness of our proposed technique as a suitable replacement for the hardware approaches which are often very costly and complicated.

Diagnostic evaluation of the Community Earth System Model in simulating mineral dust emission with insight into large-scale dust storm mobilization in the Middle East and North Africa (MENA)

NASA Astrophysics Data System (ADS)

Parajuli, Sagar Prasad; Yang, Zong-Liang; Lawrence, David M.

2016-06-01

Large amounts of mineral dust are injected into the atmosphere during dust storms, which are common in the Middle East and North Africa (MENA) where most of the global dust hotspots are located. In this work, we present simulations of dust emission using the Community Earth System Model Version 1.2.2 (CESM 1.2.2) and evaluate how well it captures the spatio-temporal characteristics of dust emission in the MENA region with a focus on large-scale dust storm mobilization. We explicitly focus our analysis on the model's two major input parameters that affect the vertical mass flux of dust-surface winds and the soil erodibility factor. We analyze dust emissions in simulations with both prognostic CESM winds and with CESM winds that are nudged towards ERA-Interim reanalysis values. Simulations with three existing erodibility maps and a new observation-based erodibility map are also conducted. We compare the simulated results with MODIS satellite data, MACC reanalysis data, AERONET station data, and CALIPSO 3-d aerosol profile data. The dust emission simulated by CESM, when driven by nudged reanalysis winds, compares reasonably well with observations on daily to monthly time scales despite CESM being a global General Circulation Model. However, considerable bias exists around known high dust source locations in northwest/northeast Africa and over the Arabian Peninsula where recurring large-scale dust storms are common. The new observation-based erodibility map, which can represent anthropogenic dust sources that are not directly represented by existing erodibility maps, shows improved performance in terms of the simulated dust optical depth (DOD) and aerosol optical depth (AOD) compared to existing erodibility maps although the performance of different erodibility maps varies by region.

Three-dimensional nanomechanical mapping of amorphous and crystalline phase transitions in phase-change materials.

PubMed

Grishin, Ilja; Huey, Bryan D; Kolosov, Oleg V

2013-11-13

The nanostructure of micrometer-sized domains (bits) in phase-change materials (PCM) that undergo switching between amorphous and crystalline phases plays a key role in the performance of optical PCM-based memories. Here, we explore the dynamics of such phase transitions by mapping PCM nanostructures in three dimensions with nanoscale resolution by combining precision Ar ion beam cross-sectional polishing and nanomechanical ultrasonic force microscopy (UFM) mapping. Surface and bulk phase changes of laser written submicrometer to micrometer sized amorphous-to-crystalline (SET) and crystalline-to-amorphous (RESET) bits in chalcogenide Ge2Sb2Te5 PCM are observed with 10-20 nm lateral and 4 nm depth resolution. UFM mapping shows that the Young's moduli of crystalline SET bits exceed the moduli of amorphous areas by 11 ± 2%, with crystalline content extending from a few nanometers to 50 nm in depth depending on the energy of the switching pulses. The RESET bits written with 50 ps pulses reveal shallower depth penetration and show 30-50 nm lateral and few nanometer vertical wavelike topography that is anticorrelated with the elastic modulus distribution. Reverse switching of amorphous RESET bits results in the full recovery of subsurface nanomechanical properties accompanied with only partial topography recovery, resulting in surface corrugations attributed to quenching. This precision sectioning and nanomechanical mapping approach could be applicable to a wide range of amorphous, nanocrystalline, and glass-forming materials for 3D nanomechanical mapping of amorphous-crystalline transitions.

The particle size distribution in Saturn's Main Rings from VIMS and UVIS stellar occultations and RSS radio occultations.

NASA Astrophysics Data System (ADS)

Jerousek, R. G.; Colwell, J. E.; Hedman, M. M.; Marouf, E. A.; French, R. G.; Esposito, L. W.; Nicholson, P. D.

2017-12-01

The parameters of a simple power-law particle size distribution can be inferred from measurements of optical depth at multiple wavelengths (Marouf et al. 1982, 1983, Zebker et al. 1985) where the number of particles of radius between a and a+da is given by n(a)da = n0(a/a0)-qda with amin ≤ a ≤ amax. In the C ring and Cassini division where the surface mass density is low, the Toomre critical wavelength for gravitational collapse is comparable to the radii of the largest particles ( 1 m) and the effects of viewing geometry on measured normal optical depth can be ignored. In these regions, we fit optical depths measured by the Visual and Infrared Mapping Spectrometer (VIMS) at λ = 2.9μm, the Ultraviolet Imaging Spectrograph (UVIS) at λ = 0.15μm, and by the Radio Science Subsystem (RSS) at X band (λ = 3.6cm) and Ka band (λ = 9.4mm) to power-law derived optical depths and constrain the power-law parameters at 10km radial resolution. In the A and B rings where the Toomre critical wavelength is much larger than the radii of the largest particles, self-gravity wakes (ephemeral elongated particle aggregates canted to the direction of orbital motion by Keplerian shear) form. Occultations of these ring regions that occur at different viewing geometries measure different normal optical depths. We model and remove the geometric effects on the ring normal optical depth using the self-gravity wake model of Colwell et al. (2006, 2007) and fit wake model derived optical depths to power-law determined optical depths to constrain the parameters of the power-law particle size distribution. We find average values of amin 5 mm in the background C ring, the C ring plateaus, and in the Cassini Division. In the A and B ring and outside the strong density waves triggered by resonances with Janus and Mimas, we find amin 9 mm except in the trans-Encke region were the minimum particle radius drops to 5 mm and again to about 3.5 mm in the trans-Keeler region near the A ring outer edge. amax ranges from one to several meters throughout the main rings, and a positive correlation between amax and the measured optical depth except in the C ring plateaus. Over the various ring regions, average amin and q are consistent with determinations from previous studies by Harbison et al. (2013), Becker et al. (2016), Jerousek et al. (2016), and Marouf et al. (2008a) with average q 2.9-3.1.

Mapping snow depth in open alpine terrain from stereo satellite imagery

NASA Astrophysics Data System (ADS)

Marti, R.; Gascoin, S.; Berthier, E.; de Pinel, M.; Houet, T.; Laffly, D.

2016-07-01

To date, there is no definitive approach to map snow depth in mountainous areas from spaceborne sensors. Here, we examine the potential of very-high-resolution (VHR) optical stereo satellites to this purpose. Two triplets of 0.70 m resolution images were acquired by the Pléiades satellite over an open alpine catchment (14.5 km2) under snow-free and snow-covered conditions. The open-source software Ame's Stereo Pipeline (ASP) was used to match the stereo pairs without ground control points to generate raw photogrammetric clouds and to convert them into high-resolution digital elevation models (DEMs) at 1, 2, and 4 m resolutions. The DEM differences (dDEMs) were computed after 3-D coregistration, including a correction of a -0.48 m vertical bias. The bias-corrected dDEM maps were compared to 451 snow-probe measurements. The results show a decimetric accuracy and precision in the Pléiades-derived snow depths. The median of the residuals is -0.16 m, with a standard deviation (SD) of 0.58 m at a pixel size of 2 m. We compared the 2 m Pléiades dDEM to a 2 m dDEM that was based on a winged unmanned aircraft vehicle (UAV) photogrammetric survey that was performed on the same winter date over a portion of the catchment (3.1 km2). The UAV-derived snow depth map exhibits the same patterns as the Pléiades-derived snow map, with a median of -0.11 m and a SD of 0.62 m when compared to the snow-probe measurements. The Pléiades images benefit from a very broad radiometric range (12 bits), allowing a high correlation success rate over the snow-covered areas. This study demonstrates the value of VHR stereo satellite imagery to map snow depth in remote mountainous areas even when no field data are available.

Non-destructive optical clearing technique enhances optical coherence tomography (OCT) for real-time, 3D histomorphometry of brain tissue (Conference Presentation)

NASA Astrophysics Data System (ADS)

Paul, Akshay; Chang, Theodore H.; Chou, Li-Dek; Ramalingam, Tirunelveli S.

2016-03-01

Evaluation of neurodegenerative disease often requires examination of brain morphology. Volumetric analysis of brain regions and structures can be used to track developmental changes, progression of disease, and the presence of transgenic phenotypes. Current standards for microscopic investigation of brain morphology are limited to detection of superficial structures at a maximum depth of 300μm. While histological techniques can provide detailed cross-sections of brain structures, they require complicated tissue preparation and the ultimate destruction of the sample. A non-invasive, label-free imaging modality known as Optical Coherence Tomography (OCT) can produce 3-dimensional reconstructions through high-speed, cross-sectional scans of biological tissue. Although OCT allows for the preservation of intact samples, the highly scattering and absorbing properties of biological tissue limit imaging depth to 1-2mm. Optical clearing agents have been utilized to increase imaging depth by index matching and lipid digestion, however, these contemporary techniques are expensive and harsh on tissues, often irreversibly denaturing proteins. Here we present an ideal optical clearing agent that offers ease-of-use and reversibility. Similar to how SeeDB has been effective for microscopy, our fructose-based, reversible optical clearing technique provides improved OCT imaging and functional immunohistochemical mapping of disease. Fructose is a natural, non-toxic sugar with excellent water solubility, capable of increasing tissue transparency and reducing light scattering. We will demonstrate the improved depth-resolving performance of OCT for enhanced whole-brain imaging of normal and diseased murine brains following a fructose clearing treatment. This technique potentially enables rapid, 3-dimensional evaluation of biological tissues at axial and lateral resolutions comparable to histopathology.

Performance evaluation of CESM in simulating the dust cycle

NASA Astrophysics Data System (ADS)

Parajuli, S. P.; Yang, Z. L.; Kocurek, G.; Lawrence, D. M.

2014-12-01

Mineral dust in the atmosphere has implications for Earth's radiation budget, biogeochemical cycles, hydrological cycles, human health and visibility. Mineral dust is injected into the atmosphere during dust storms when the surface winds are sufficiently strong and the land surface conditions are favorable. Dust storms are very common in specific regions of the world including the Middle East and North Africa (MENA) region, which contains more than 50% of the global dust sources. In this work, we present simulation of the dust cycle under the framework of CESM1.2.2 and evaluate how well the model captures the spatio-temporal characteristics of dust sources, transport and deposition at global scale, especially in dust source regions. We conducted our simulations using two existing erodibility maps (geomorphic and topographic) and a new erodibility map, which is based on the correlation between observed wind and dust. We compare the simulated results with MODIS satellite data, MACC reanalysis data, and AERONET station data. Comparison with MODIS satellite data and MACC reanalysis data shows that all three erodibility maps generally reproduce the spatio-temporal characteristics of dust optical depth globally. However, comparison with AERONET station data shows that the simulated dust optical depth is generally overestimated for all erodibility maps. Results vary greatly by region and scale of observational data. Our results also show that the simulations forced by reanalysis meteorology capture the overall dust cycle more realistically compared to the simulations done using online meteorology.

Thermal and albedo mapping of the polar regions of Mars using Viking thermal mapper observations: 1. North polar region

NASA Technical Reports Server (NTRS)

Paige, David A.; Bachman, Jennifer E.; Keegan, Kenneth D.

1994-01-01

We present the first maps of the apparent thermal inertia and albedo of the north polar region of Mars. The observations used to create these maps were acquired by the infrared thermal mapper (IRTM) instruments on the two Viking orbiters over a 50-day period in 1978 during the Martian early northern summer season. The maps cover the region from 60 deg N to the north pole at a spatial resolution of 1/2 deg of latitude. The analysis and interpretation of these maps is aided by the results of a one-dimensional radiative convective model, which is used to calculate diurnal variations in surface and atmospheric temperatures, and brightness temperatures at the top of the atmospphere for a wide range of assumptions concerning aerosol optical properties and aerosol optical depths. The results of these calculations show that the effects of the Martian atmosphere on remote determinations of surface thermal inertia are more significant than have been indicated in previous studies. The maps of apparent thermal inertia and albedo show a great deal of spatial structure that is well correlated with surface features.

Etch depth mapping of phase binary computer-generated holograms by means of specular spectroscopic scatterometry

NASA Astrophysics Data System (ADS)

Korolkov, Victor P.; Konchenko, Alexander S.; Cherkashin, Vadim V.; Mironnikov, Nikolay G.; Poleshchuk, Alexander G.

2013-09-01

Detailed analysis of etch depth map for phase binary computer-generated holograms intended for testing aspheric optics is a very important task. In particular, diffractive Fizeau null lenses need to be carefully tested for uniformity of etch depth. We offer a simplified version of the specular spectroscopic scatterometry method. It is based on the spectral properties of binary phase multi-order gratings. An intensity of zero order is a periodical function of illumination light wave number. The grating grooves depth can be calculated as it is inversely proportional to the period. Measurement in reflection allows one to increase the phase depth of the grooves by a factor of 2 and measure more precisely shallow phase gratings. Measurement uncertainty is mainly defined by the following parameters: shifts of the spectrum maximums that occur due to the tilted grooves sidewalls, uncertainty of light incidence angle measurement, and spectrophotometer wavelength error. It is theoretically and experimentally shown that the method we describe can ensure 1% error. However, fiber spectrometers are more convenient for scanning measurements of large area computer-generated holograms. Our experimental system for characterization of binary computer-generated holograms was developed using a fiber spectrometer.

TH-EF-207A-06: High-Resolution Optical-CT/ECT Imaging of Unstained Mice Femur, Brain, Spleen, and Tumor

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yoon, S; Dewhirst, M; Oldham, M

2016-06-15

Purpose: Optical transmission and emission computed tomography (optical-CT/ECT) provides high-resolution 3D attenuation and emission maps in unsectioned large (∼1cm{sup 3}) ex vivo tissue samples at a resolution of 12.9µm{sup 3} per voxel. Here we apply optical-CT/ECT to investigate high-resolution structure and auto-fluorescence in a range of optically cleared mice organs, including, for the first time, mouse bone (femur), opening the potential for study of bone metastasis and bone-mediated immune response. Methods: Three BALBc mice containing 4T1 flank tumors were sacrificed to obtain spleen, brain, tumor, and femur. Tissues were washed in 4% PFA, fixed in EtOH solution (for 5, 10,more » 10, and 2 days respectively), and then optically cleared for 3 days in BABBs. The femur was also placed in 0.25M aqueous EDTA for 15–30 days to remove calcium. Optical-CT/ECT attenuation and emission maps at 633nm (the latter using 530nm excitation light) were obtained for all samples. Bi-telecentric optical-CT was compared side-by-side with conventional optical projection tomography (OPT) imaging to evaluate imaging capability of these two rival techniques. Results: Auto-fluorescence mapping of femurs reveals vasculatures and fluorescence heterogeneity. High signals (A.U.=10) are reported in the medullary cavity but not in the cortical bone (A.U.=1). The brain strongly and uniform auto-fluoresces (A.U.=5). Thick, optically dense organs such as the spleen and the tumor (0.12, 0.46OD/mm) are reconstructed at depth without significant loss of resolution, which we attribute to the bi-telecentric optics of optical-CT. The attenuation map of tumor reveals vasculature, attenuation heterogeneity, and possibly necrotic tissue. Conclusion: We demonstrate the feasibility of optical-CT/ECT imaging of un-sectioned mice bones (femurs) and spleen with high resolution. This result, and the characterization of unstained organs, are important steps enabling future studies involving optical-CT/ECT applied to study metastasis and immunologic responses via fluorescence staining.« less

Mapping snow depth from stereo satellite imagery

NASA Astrophysics Data System (ADS)

Gascoin, S.; Marti, R.; Berthier, E.; Houet, T.; de Pinel, M.; Laffly, D.

2016-12-01

To date, there is no definitive approach to map snow depth in mountainous areas from spaceborne sensors. Here, we examine the potential of very-high-resolution (VHR) optical stereo satellites to this purpose. Two triplets of 0.70 m resolution images were acquired by the Pléiades satellite over an open alpine catchment (14.5 km²) under snow-free and snow-covered conditions. The open-source software Ame's Stereo Pipeline (ASP) was used to match the stereo pairs without ground control points to generate raw photogrammetric clouds and to convert them into high-resolution digital elevation models (DEMs) at 1, 2, and 4 m resolutions. The DEM differences (dDEMs) were computed after 3-D coregistration, including a correction of a -0.48 m vertical bias. The bias-corrected dDEM maps were compared to 451 snow-probe measurements. The results show a decimetric accuracy and precision in the Pléiades-derived snow depths. The median of the residuals is -0.16 m, with a standard deviation (SD) of 0.58 m at a pixel size of 2 m. We compared the 2 m Pléiades dDEM to a 2 m dDEM that was based on a winged unmanned aircraft vehicle (UAV) photogrammetric survey that was performed on the same winter date over a portion of the catchment (3.1 km²). The UAV-derived snow depth map exhibits the same patterns as the Pléiades-derived snow map, with a median of -0.11 m and a SD of 0.62 m when compared to the snow-probe measurements. The Pléiades images benefit from a very broad radiometric range (12 bits), allowing a high correlation success rate over the snow-covered areas. This study demonstrates the value of VHR stereo satellite imagery to map snow depth in remote mountainous areas even when no field data are available. Based on this method we have initiated a multi-year survey of the peak snow depth in the Bassiès catchment.

IMAGING AND MEASUREMENT OF THE PRERETINAL SPACE IN VITREOMACULAR ADHESION AND VITREOMACULAR TRACTION BY A NEW SPECTRAL DOMAIN OPTICAL COHERENCE TOMOGRAPHY ANALYSIS.

PubMed

Stopa, Marcin; Marciniak, Elżbieta; Rakowicz, Piotr; Stankiewicz, Agnieszka; Marciniak, Tomasz; Dąbrowski, Adam

2017-10-01

To evaluate a new method for volumetric imaging of the preretinal space (also known as the subhyaloid, subcortical, or retrocortical space) and investigate differences in preretinal space volume in vitreomacular adhesion (VMA) and vitreomacular traction (VMT). Nine patients with VMA and 13 with VMT were prospectively evaluated. Automatic inner limiting membrane line segmentation, which exploits graph search theory implementation, and posterior cortical vitreous line segmentation were performed on 141 horizontal spectral domain optical coherence tomography B-scans per patient. Vertical distances (depths) between the posterior cortical vitreous and inner limiting membrane lines were calculated for each optical coherence tomography B-scan acquired. The derived distances were merged and visualized as a color depth map that represented the preretinal space between the posterior surface of the hyaloid and the anterior surface of the retina. The early treatment d retinopathy study macular map was overlaid onto final virtual maps, and preretinal space volumes were calculated for each early treatment diabetic retinopathy study map sector. Volumetric maps representing preretinal space volumes were created for each patient in the VMA and VMT groups. Preretinal space volumes were larger in all early treatment diabetic retinopathy study map macular regions in the VMT group compared with those in the VMA group. The differences reached statistical significance in all early treatment diabetic retinopathy study sectors, except for the superior outer macula and temporal outer macula where significance values were P = 0.05 and P = 0.08, respectively. Overall, the relative differences in preretinal space volumes between the VMT and VMA groups varied from 2.7 to 4.3 in inner regions and 1.8 to 2.9 in outer regions. Our study provides evidence of significant differences in preretinal space volume between eyes with VMA and those with VMT. This may be useful not only in the investigation of preretinal space properties in VMA and VMT, but also in other conditions, such as age-related macular degeneration, diabetic retinopathy, and central retinal vein occlusion.

4D light-field sensing system for people counting

NASA Astrophysics Data System (ADS)

Hou, Guangqi; Zhang, Chi; Wang, Yunlong; Sun, Zhenan

2016-03-01

Counting the number of people is still an important task in social security applications, and a few methods based on video surveillance have been proposed in recent years. In this paper, we design a novel optical sensing system to directly acquire the depth map of the scene from one light-field camera. The light-field sensing system can count the number of people crossing the passageway, and record the direction and intensity of rays at a snapshot without any assistant light devices. Depth maps are extracted from the raw light-ray sensing data. Our smart sensing system is equipped with a passive imaging sensor, which is able to naturally discern the depth difference between the head and shoulders for each person. Then a human model is built. Through detecting the human model from light-field images, the number of people passing the scene can be counted rapidly. We verify the feasibility of the sensing system as well as the accuracy by capturing real-world scenes passing single and multiple people under natural illumination.

Full-sky, High-resolution Maps of Interstellar Dust

NASA Astrophysics Data System (ADS)

Meisner, Aaron Michael

We present full-sky, high-resolution maps of interstellar dust based on data from the Wide-field Infrared Survey Explorer (WISE) and Planck missions. We describe our custom processing of the entire WISE 12 micron All-Sky imaging data set, and present the resulting 15 arcsecond resolution, full-sky map of diffuse Galactic dust emission, free of compact sources and other contaminating artifacts. Our derived 12 micron dust map offers angular resolution far superior to that of all other existing full-sky, infrared dust emission maps, revealing a wealth of small-scale filamentary structure. We also apply the Finkbeiner et al. (1999) two-component thermal dust emission model to the Planck HFI maps. We derive full-sky 6.1 arcminute resolution maps of dust optical depth and temperature by fitting this two-component model to Planck 217-857 GHz along with DIRBE/IRAS 100 micron data. In doing so, we obtain the first ever full-sky 100-3000 GHz Planck-based thermal dust emission model, as well as a dust temperature correction with ~10 times enhanced angular resolution relative to DIRBE-based temperature maps. Analyzing the joint Planck/DIRBE dust spectrum, we show that two-component models provide a better fit to the 100-3000 GHz emission than do single-MBB models, though by a lesser margin than found by Finkbeiner et al. (1999) based on FIRAS and DIRBE. We find that, in diffuse sky regions, our two-component 100-217 GHz predictions are on average accurate to within 2.2%, while extrapolating the Planck Collaboration (2013) single-MBB model systematically underpredicts emission by 18.8% at 100 GHz, 12.6% at 143 GHz and 7.9% at 217 GHz. We calibrate our two-component optical depth to reddening, and compare with reddening estimates based on stellar spectra. We find the dominant systematic problems in our temperature/reddening maps to be zodiacal light on large angular scales and the cosmic infrared background anisotropy on small angular scales. Future work will focus on combining our WISE 12 micron dust map and Planck dust model to create a next-generation, full-sky dust extinction map with angular resolution several times better than Schlegel et al. (1998).

Compositionally Dependent Nonlinear Optical Bandgap Behavior of Mixed Anodic Oxides in Niobium-Titanium System.

PubMed

Bleckenwegner, Petra; Mardare, Cezarina Cela; Cobet, Christoph; Kollender, Jan Philipp; Hassel, Achim Walter; Mardare, Andrei Ionut

2017-02-13

Optical bandgap mapping of Nb-Ti mixed oxides anodically grown on a thin film parent metallic combinatorial library was performed via variable angle spectroscopic ellipsometry (VASE). A wide Nb-Ti compositional spread ranging from Nb-90 at.% Ti to Nb-15 at.% Ti deposited by cosputtering was used for this purpose. The Nb-Ti library was stepwise anodized at potentials up to 10 V SHE, and the anodic oxides optical properties were mapped along the Nb-Ti library with 2 at.% resolution. The surface dissimilarities along the Nb-Ti compositional gradient were minimized by tuning the deposition parameters, thus allowing a description of the mixed Nb-Ti oxides based on a single Tauc-Lorentz oscillator for data fitting. Mapping of the Nb-Ti oxides optical bandgap along the entire compositional spread showed a clear deviation from the linear model based on mixing individual Nb and Ti electronegativities proportional to their atomic fractions. This is attributed to the strong amorphization and an in-depth compositional gradient of the mixed oxides. A systematic optical bandgap decrease toward values as low as 2.0 eV was identified at approximately 50 at.% Nb. Mixing of Nb 2 O 5 and TiO 2 with both amorphous and crystalline phases is concluded, whereas the possibility of complex Nb a Ti b O y oxide formation during anodization is unlikely.

DeepSurveyCam—A Deep Ocean Optical Mapping System

PubMed Central

Kwasnitschka, Tom; Köser, Kevin; Sticklus, Jan; Rothenbeck, Marcel; Weiß, Tim; Wenzlaff, Emanuel; Schoening, Timm; Triebe, Lars; Steinführer, Anja; Devey, Colin; Greinert, Jens

2016-01-01

Underwater photogrammetry and in particular systematic visual surveys of the deep sea are by far less developed than similar techniques on land or in space. The main challenges are the rough conditions with extremely high pressure, the accessibility of target areas (container and ship deployment of robust sensors, then diving for hours to the ocean floor), and the limitations of localization technologies (no GPS). The absence of natural light complicates energy budget considerations for deep diving flash-equipped drones. Refraction effects influence geometric image formation considerations with respect to field of view and focus, while attenuation and scattering degrade the radiometric image quality and limit the effective visibility. As an improvement on the stated issues, we present an AUV-based optical system intended for autonomous visual mapping of large areas of the seafloor (square kilometers) in up to 6000 m water depth. We compare it to existing systems and discuss tradeoffs such as resolution vs. mapped area and show results from a recent deployment with 90,000 mapped square meters of deep ocean floor. PMID:26828495

MRT letter: Guided filtering of image focus volume for 3D shape recovery of microscopic objects.

PubMed

Mahmood, Muhammad Tariq

2014-12-01

In this letter, a shape from focus (SFF) method is proposed that utilizes the guided image filtering to enhance the image focus volume efficiently. First, image focus volume is computed using a conventional focus measure. Then each layer of image focus volume is filtered using guided filtering. In this work, the all-in-focus image, which can be obtained from the initial focus volume, is used as guidance image. Finally, improved depth map is obtained from the filtered image focus volume by maximizing the focus measure along the optical axis. The proposed SFF method is efficient and provides better depth maps. The improved performance is highlighted by conducting several experiments using image sequences of simulated and real microscopic objects. The comparative analysis demonstrates the effectiveness of the proposed SFF method. © 2014 Wiley Periodicals, Inc.

Spatial and temporal variability of phytoplankton chlorophyll and carbon in the equatorial Pacific, 2005 to 2008: Observations from ships and satellites.

NASA Astrophysics Data System (ADS)

Craig, J. D.; Strutton, P. G.; Evans, W.

2008-12-01

A database of chlorophyll fluorescence, particulate backscatter and beam attenuation was constructed from 17 cruises spanning the equatorial Pacific between August 2005 and February 2008. These optical measurements serve at least two important purposes. First, they can be used to document changes in phytoplankton abundance and physiology in a globally significant ecosystem. Second, they represent an important validation database for satellite observations that form the core of emerging primary productivity models. The data consist of CTD profiles from the surface to 1000m at least every degree of latitude between 8N and 8S, from near the Galapagos to beyond the date line. The optical data were calibrated with in situ samples of chlorophyll and particulate organic carbon (POC) from 4 of the 17 cruises. Chlorophyll concentration was derived from a multiple linear regression of chlorophyll fluorescence, time of day and depth, to account for photoinhibition of the fluorescence signal near the surface during the day. POC was derived from both particulate backscatter and beam attenuation. The optical data were then used to produce maps and latitude-depth sections of chlorophyll and POC for cruises where no in situ samples exist. In the eastern and central equatorial Pacific, phytoplankton chlorophyll to carbon ratios decreased by 30 to 50 percent during the weak El Nino conditions of 2006-2007. This change was due mostly to a decrease in chlorophyll, while POC remained relatively constant. In the western Pacific, the decrease in chl:C was absent, but an increase occurred in early 2008 when the system recovered from El Nino. Changes in chl:C, mostly indicative of photoadaptation, were also observed with depth and latitude as upwelled waters from the equator move poleward. Satellite-based maps of chlorophyll, phytoplankton C and chl:C were also produced and compared with the in situ optical measurements, with mostly good agreement.

Correlation mapping: rapid method for retrieving microcirculation morphology from optical coherence tomography intensity images

NASA Astrophysics Data System (ADS)

Jonathan, E.; Enfield, J.; Leahy, M. J.

2011-03-01

The microcirculation plays a critical role is maintaining organ health and function by serving as a vascular are where trophic metabolism exchanges between blood and tissue takes place. To facilitate regular assessment in vivo, noninvasive microcirculation imagers are required in clinics. Among this group of clinical devices, are those that render microcirculation morphology such as nailfold capillaroscopy, a common device for early diagnosis and monitoring of microangiopathies. However, depth ambiguity disqualify this and other similar techniques in medical tomography where due to the 3-D nature of biological organs, imagers that support depth-resolved 2-D imaging and 3-D image reconstruction are required. Here, we introduce correlation map OCT (cmOCT), a promising technique for microcirculation morphology imaging that combines standard optical coherence tomography and an agile imaging analysis software based on correlation statistic. Promising results are presented of the microcirculation morphology images of the brain region of a small animal model as well as measurements of vessel geometry at bifurcations, such as vessel diameters, branch angles. These data will be useful for obtaining cardiovascular related characteristics such as volumetric flow, velocity profile and vessel-wall shear stress for circulatory and respiratory system.

Retinal nerve fiber layer thickness map and blood flow pulsation measured with SDOCT

NASA Astrophysics Data System (ADS)

Mujat, Mircea; Chan, Raymond C.; Cense, Barry; Pierce, Mark; Park, Hyle; Joo, Chulmin; Chen, Teresa C.; de Boer, Johannes F.

2006-02-01

Spectral-Domain Optical Coherence Tomography (SDOCT) allows for in-vivo video-rate investigation of biomedical tissue depth structure intended for non-invasive optical diagnostics. It has been suggested that OCT can be used for di-agnosis of glaucoma by measuring the thickness of the Retinal Nerve Fiber Layer (RNLF). We present an automated method for determining the RNFL thickness from a 3-D dataset based on edge detection using a deformable spline algo-rithm. The RNFL thickness map is combined with an integrated reflectance map and retinal cross-sectional images to provide the ophthalmologist with a familiar image for interpreting the OCT data. The video-rate capabilities of our SDOCT system allow for mapping the true retinal topography since motion artifacts are significantly reduced as com-pared to slower time-domain systems. Combined with Doppler Velocimetry, SDOCT also provides information on retinal blood flow dynamics. We analyzed the pulsatile nature of the bidirectional flow dynamics in an artery-vein pair for a healthy volunteer at different locations and for different blood vessel diameters. The Doppler phase shift is determined as the phase difference at the same point of adjacent depth profiles, and is integrated over the area delimited by two circles corresponding to the blood vessels location. Its temporal evolution clearly shows the blood flow pulsatile nature, the cardiac cycle, in both artery and vein. The artery is identified as having a stronger variation of the integrated phase shift. We observe that artery pulsation is always easily detectable, while vein pulsation seems to depend on the veins diameter.

Optical mapping of conduction in early embryonic quail hearts with light-sheet microscopy (Conference Presentation)

NASA Astrophysics Data System (ADS)

Ma, Pei; Gu, Shi; Wang, Yves T.; Jenkins, Michael W.; Rollins, Andrew M.

2016-03-01

Optical mapping (OM) using fluorescent voltage-sensitive dyes (VSD) to measure membrane potential is currently the most effective method for electrophysiology studies in early embryonic hearts due to its noninvasiveness and large field-of-view. Conventional OM acquires bright-field images, collecting signals that are integrated in depth and projected onto a 2D plane, not capturing the 3D structure of the sample. Early embryonic hearts, especially at looping stages, have a complicated, tubular geometry. Therefore, conventional OM cannot provide a full picture of the electrical conduction circumferentially around the heart, and may result in incomplete and inaccurate measurements. Here, we demonstrate OM of Hamburger and Hamilton stage 14 embryonic quail hearts using a new commercially-available VSD, Fluovolt, and depth sectioning using a custom built light-sheet microscopy system. Axial and lateral resolution of the system is 14µm and 8µm respectively. For OM imaging, the field-of-view was set to 900µm×900µm to cover the entire heart. 2D over time OM image sets at multiple cross-sections through the looping-stage heart were recorded. The shapes of both atrial and ventricular action potentials acquired were consistent with previous reports using conventional VSD (di-4-ANNEPS). With Fluovolt, signal-to-noise ratio (SNR) is improved significantly by a factor of 2-10 (compared with di-4-ANNEPS) enabling light-sheet OM, which intrinsically has lower SNR due to smaller sampling volumes. Electrophysiologic parameters are rate dependent. Optical pacing was successfully integrated into the system to ensure heart rate consistency. This will also enable accurately gated reconstruction of full four dimensional conduction maps and 3D conduction velocity measurements.

Quantitative retrieval of aerosol optical thickness from FY-2 VISSR data

NASA Astrophysics Data System (ADS)

Bai, Linyan; Xue, Yong; Cao, Chunxiang; Feng, Jianzhong; Zhang, Hao; Guang, Jie; Wang, Ying; Li, Yingjie; Mei, Linlu; Ai, Jianwen

2010-11-01

Atmospheric aerosol, as particulate matter suspended in the air, exists in a variety of forms such as dust, fume and mist. It deeply affects climate and land surface environment in both regional and global scales, and furthermore, lead to be hugely much influence on human health. For the sake of effectively monitoring it, many atmospheric aerosol observation networks are set up and provide associated informational services in the wide world, as well-known Aerosol robotic network (AERONET), Canadian Sunphotometer Network (AeroCan) and so forth. Given large-scale atmospheric aerosol monitoring, that satellite remote sensing data are used to inverse aerosol optical depth is one of available and effective approaches. Nowadays, special types of instruments aboard running satellites are applied to obtain related remote sensing data of retrieving atmospheric aerosol. However, atmospheric aerosol real-timely or near real-timely monitoring hasn't been accomplished. Nevertheless, retrievals, using Fengyun-2 VISSR data, are carried out and the above problem resolved to certain extent, especially over China. In this paper, the authors have developed a new retrieving model/mode to retrieve aerosol optical depth, using Fengyun-2 satellite data that were obtained by the VISSR aboard FY-2C and FY-2D. A series of the aerosol optical depth distribution maps with high time resolution were able to obtained, is helpful for understanding the forming mechanism, transport, influence and controlling approach of atmospheric aerosol.

Dust aerosols above the south polar cap of Mars as seen by OMEGA

NASA Astrophysics Data System (ADS)

Vincendon, M.; Langevin, Y.; Poulet, F.; Bibring, J.-P.; Gondet, B.; Jouglet, D.; Omega Team

2008-08-01

The time evolution of atmospheric dust at high southern latitudes on Mars has been determined using observations of the south seasonal cap acquired in the near infrared (1-2.65 μm) by OMEGA/Mars Express in 2005. Observations at different solar zenith angles and one EPF sequence demonstrate that the reflectance in the 2.64 μm saturated absorption band of the surface CO 2 ice is mainly due to the light scattered by aerosols above most places of the seasonal cap. We have mapped the total optical depth of dust aerosols in the near-IR above the south seasonal cap of Mars from mid-spring to early summer with a time resolution ranging from one day to one week and a spatial resolution of a few kilometers. The optical depth above the south perennial cap is determined on a longer time range covering southern spring and summer. A constant set of optical properties of dust aerosols is consistent with OMEGA observations during the analyzed period. Strong variations of the optical depth are observed over small horizontal and temporal scales, corresponding in part to moving dust clouds. The late summer peak in dust opacity observed by Opportunity in 2005 propagated to the south pole contrarily to that observed in mid spring. This may be linked to evidence for dust scavenging by water ice-rich clouds circulating at high southern latitudes at this season.

Atmospheric correction for satellite-based volcanic ash mapping and retrievals using ``split window'' IR data from GOES and AVHRR

NASA Astrophysics Data System (ADS)

Yu, Tianxu; Rose, William I.; Prata, A. J.

2002-08-01

Volcanic ash in volcanic clouds can be mapped in two dimensions using two-band thermal infrared data available from meteorological satellites. Wen and Rose [1994] developed an algorithm that allows retrieval of the effective particle size, the optical depth of the volcanic cloud, and the mass of fine ash in the cloud. Both the mapping and the retrieval scheme are less accurate in the humid tropical atmosphere. In this study we devised and tested a scheme for atmospheric correction of volcanic ash mapping and retrievals. The scheme utilizes infrared (IR) brightness temperature (BT) information in two infrared channels (both between 10 and 12.5 μm) and the brightness temperature differences (BTD) to estimate the amount of BTD shift caused by lower tropospheric water vapor. It is supported by the moderate resolution transmission (MODTRAN) analysis. The discrimination of volcanic clouds in the new scheme also uses both BT and BTD data but corrects for the effects of the water vapor. The new scheme is demonstrated and compared with the old scheme using two well-documented examples: (1) the 18 August 1992 volcanic cloud of Crater Peak, Mount Spurr, Alaska, and (2) the 26 December 1997 volcanic cloud from Soufriere Hills, Montserrat. The Spurr example represents a relatively ``dry'' subarctic atmospheric condition. The new scheme sees a volcanic cloud that is about 50% larger than the old. The mean optical depth and effective radii of cloud particles are lower by 22% and 9%, and the fine ash mass in the cloud is 14% higher. The Montserrat cloud is much smaller than Spurr and is more sensitive to atmospheric moisture. It also was located in a moist tropical atmosphere. For the Montserrat example the new scheme shows larger differences, with the area of the volcanic cloud being about 5.5 times larger, the optical depth and effective radii of particles lower by 56% and 28%, and the total fine particle mass in the cloud increased by 53%. The new scheme can be automated and can contribute to more accurate remote volcanic ash detection. More tests are needed to find the best way to estimate the water vapor effects in real time.

The Use of Aerosol Optical Depth in Estimating Trace Gas Emissions from Biomass Burning Plumes

NASA Astrophysics Data System (ADS)

Jones, N.; Paton-Walsh, C.; Wilson, S.; Meier, A.; Deutscher, N.; Griffith, D.; Murcray, F.

2003-12-01

We have observed significant correlations between aerosol optical depth (AOD) at 500 nm and column amounts of a number of biomass burning indicators (carbon monoxide, hydrogen cyanide, formaldehyde and ammonia) in bushfire smoke plumes over SE Australia during the 2001/2002 and 2002/2003 fire seasons from remote sensing measurements. The Department of Chemistry, University of Wollongong, operates a high resolution Fourier Transform Spectrometer (FTS), in the city of Wollongong, approximately 80 km south of Sydney. During the recent bushfires we collected over 1500 solar FTIR spectra directly through the smoke over Wollongong. The total column amounts of the biomass burning indicators were calculated using the profile retrieval software package SFIT2. Using the same solar beam, a small grating spectrometer equipped with a 2048 pixel CCD detector array, was used to calculate simultaneous aerosol optical depths. This dataset is therefore unique in its temporal sampling, location to active fires, and range of simultaneously measured constituents. There are several important applications of the AOD to gas column correlation. The estimation of global emissions from biomass burning currently has very large associated uncertainties. The use of visible radiances measured by satellites, and hence AOD, could significantly reduce these uncertainties by giving a direct estimate of global emissions of gases from biomass burning through application of the AOD to gas correlation. On a more local level, satellite-derived aerosol optical depth maps could be inverted to infer approximate concentration levels of smoke-related pollutants at the ground and in the lower troposphere, and thus can be used to determine the nature of any significant health impacts.

Experimental Constraints On Transparency of The 1052;1040;rtian Atmosphere Out of Dust Storm

NASA Astrophysics Data System (ADS)

Korablev, O.; Moroz, V. I.; Rodin, A. V.

In the absence of a dust storm so-called permanent dust haze with = 0.2 in the atmo- sphere of Mars determines its thermal structure, as it has been shown by Gierasch and Goody [1972 JAS 29, 400] and is confirmed by modern Mars GCMs that include dust cycle. Dust loading varies substantially with the season and geographic location, and only the data of mapping instruments are adequate to characterize it. Presently, these are the data of thermal IR instruments, benefiting from being insensitive to condensa- tional clouds: TES/MGS and IRTM/Viking. In calm atmospheric conditions (aphelion season) a typical value of 9-µm optical depth 9 of 0.05-0.15 is observed by these instruments [Smith et al. 2000, 2001 JGR 105, 9539; JGR 106, 23929; Martin and Richardson 1993 JGR 98, 10941]. In order to quantify the typical optical depth of the permanent dust haze, we will discuss, among others, the following two questions: 1) How to agree the above values and reliable measurements from the surface (VL, Pathfinder) which give the typical optical depth (out of dust storms) of = 0.5 from one side, and some ground-based observations (in UV-visible range) that frequently reveal < 0.02 on the other side. 2) What is the relationship between 9 and the visi- ble optical depth? Comparison of IRTM and VL measurements (the only simultaneous observations available so far) suggest vis/9 = 2.5, that contradict to vis/9 = 0.9 that follow from IRIS/Mariner 9 mineralogy model, which is confirmed by recent re- analysis of IRIS data.

Constraints on the optical depth of galaxy groups and clusters

DOE PAGES

Flender, Samuel; Nagai, Daisuke; McDonald, Michael

2017-03-10

Here, future data from galaxy redshift surveys, combined with high-resolutions maps of the cosmic microwave background, will enable measurements of the pairwise kinematic Sunyaev–Zel'dovich (kSZ) signal with unprecedented statistical significance. This signal probes the matter-velocity correlation function, scaled by the average optical depth (τ) of the galaxy groups and clusters in the sample, and is thus of fundamental importance for cosmology. However, in order to translate pairwise kSZ measurements into cosmological constraints, external constraints on τ are necessary. In this work, we present a new model for the intracluster medium, which takes into account star formation, feedback, non-thermal pressure, and gas cooling. Our semi-analytic model is computationally efficient and can reproduce results of recent hydrodynamical simulations of galaxy cluster formation. We calibrate the free parameters in the model using recent X-ray measurements of gas density profiles of clusters, and gas masses of groups and clusters. Our observationally calibrated model predicts the averagemore » $${\\tau }_{500}$$ (i.e., the integrated τ within a disk of size R 500) to better than 6% modeling uncertainty (at 95% confidence level). If the remaining uncertainties associated with other astrophysical uncertainties and X-ray selection effects can be better understood, our model for the optical depth should break the degeneracy between optical depth and cluster velocity in the analysis of future pairwise kSZ measurements and improve cosmological constraints with the combination of upcoming galaxy and CMB surveys, including the nature of dark energy, modified gravity, and neutrino mass.« less

Constraints on the optical depth of galaxy groups and clusters

DOE Office of Scientific and Technical Information (OSTI.GOV)

Flender, Samuel; Nagai, Daisuke; McDonald, Michael

Here, future data from galaxy redshift surveys, combined with high-resolutions maps of the cosmic microwave background, will enable measurements of the pairwise kinematic Sunyaev–Zel'dovich (kSZ) signal with unprecedented statistical significance. This signal probes the matter-velocity correlation function, scaled by the average optical depth (τ) of the galaxy groups and clusters in the sample, and is thus of fundamental importance for cosmology. However, in order to translate pairwise kSZ measurements into cosmological constraints, external constraints on τ are necessary. In this work, we present a new model for the intracluster medium, which takes into account star formation, feedback, non-thermal pressure, and gas cooling. Our semi-analytic model is computationally efficient and can reproduce results of recent hydrodynamical simulations of galaxy cluster formation. We calibrate the free parameters in the model using recent X-ray measurements of gas density profiles of clusters, and gas masses of groups and clusters. Our observationally calibrated model predicts the averagemore » $${\\tau }_{500}$$ (i.e., the integrated τ within a disk of size R 500) to better than 6% modeling uncertainty (at 95% confidence level). If the remaining uncertainties associated with other astrophysical uncertainties and X-ray selection effects can be better understood, our model for the optical depth should break the degeneracy between optical depth and cluster velocity in the analysis of future pairwise kSZ measurements and improve cosmological constraints with the combination of upcoming galaxy and CMB surveys, including the nature of dark energy, modified gravity, and neutrino mass.« less

Observations on the arrangement of axons according to diameter in the optic tract of the opossum Didelphis marsupialis.

PubMed

Allodi, S; Reese, B E; Cavalcante, L A

1990-01-01

The spectra of fiber sizes at different depths of the optic tract of the opossum Didelphis marsupialis were examined by electron microscopy in order to test for correlations between the eventual location of axons and relevant developmental events. Frequency histograms showed 1) a predominant representation of medium-sized axons and the virtual exclusion of coarse fibers from the deepest portion of that pathway, and 2) a progressive increase in the proportion of thin axons from deep to superficial sites of the tract. These findings are discussed in terms of the view of the optic tract as a chronological map of axon arrival.

Finding the position of tumor inhomogeneities in a gel-like model of a human breast using 3-D pulsed digital holography.

PubMed

Hernández-Montes, Maria del Socorro; Pérez-López, Carlos; Santoyo, Fernando Mendoza

2007-01-01

3-D pulsed digital holography is a noninvasive optical method used to measure the depth position of breast tumor tissue immersed in a semisolid gel model. A master gel without inhomogeneities is set to resonate at an 810 Hz frequency; then, an identically prepared gel with an inhomogeneity is interrogated with the same resonant frequency in the original setup. Comparatively, and using only an out-of-plane sensitive setup, gel surface displacement can be measured, evidencing an internal inhomogeneity. However, the depth position cannot be measured accurately, since the out-of-plane component has the contribution of in-plane surface displacements. With the information gathered, three sensitivity vectors can be obtained to separate contributions from x, y, and z vibration displacement components, individual displacement maps for the three orthogonal axes can be built, and the inhomogeneity's depth position can be accurately measured. Then, the displacement normal to the gel surface is used to find the depth profile and its cross section. Results from the optical data obtained are compared and correlated to the inhomogeneity's physically measured position. Depth position is found with an error smaller than 1%. The inhomogeneity and its position within the gel can be accurately found, making the method a promising noninvasive alternative to study mammary tumors.

Depth-resolved multilayer pigment identification in paintings: combined use of laser-induced breakdown spectroscopy (LIBS) and optical coherence tomography (OCT).

PubMed

Kaszewska, Ewa A; Sylwestrzak, Marcin; Marczak, Jan; Skrzeczanowski, Wojciech; Iwanicka, Magdalena; Szmit-Naud, Elżbieta; Anglos, Demetrios; Targowski, Piotr

2013-08-01

A detailed feasibility study on the combined use of laser-induced breakdown spectroscopy with optical coherence tomography (LIBS/OCT), aiming at a realistic depth-resolved elemental analysis of multilayer stratigraphies in paintings, is presented. Merging a high spectral resolution LIBS system with a high spatial resolution spectral OCT instrument significantly enhances the quality and accuracy of stratigraphic analysis. First, OCT mapping is employed prior to LIBS analysis in order to assist the selection of specific areas of interest on the painting surface to be examined in detail. Then, intertwined with LIBS, the OCT instrument is used as a precise profilometer for the online determination of the depth of the ablation crater formed by individual laser pulses during LIBS depth-profile analysis. This approach is novel and enables (i) the precise in-depth scaling of elemental concentration profiles, and (ii) the recognition of layer boundaries by estimating the corresponding differences in material ablation rate. Additionally, the latter is supported, within the transparency of the object, by analysis of the OCT cross-sectional views. The potential of this method is illustrated by presenting results on the detailed analysis of the structure of an historic painting on canvas performed to aid planned restoration of the artwork.

In vivo microcirculation imaging of the sub surface fingertip using correlation mapping optical coherence tomography (cmOCT)

NASA Astrophysics Data System (ADS)

Dsouza, Roshan I.; Zam, Azhar; Subhash, Hrebesh M.; Larin, Kirill V.; Leahy, Martin

2013-02-01

We describe a novel application of correlation mapping optical coherence tomography (cmOCT) for sub-surface fingerprint biometric identification. Fingerprint biometrics including automated fingerprint identification systems, are commonly used to recognise the fingerprint, since they constitute simple, effective and valuable physical evidence. Spoofing of biometric fingerprint devices can be easily done because of the limited information obtained from the surface topography. In order to overcome this limitation a potentially more secure source of information is required for biometric identification applications. In this study, we retrieve the microcirculation map of the subsurface fingertip by use of the cmOCT technique. To increase probing depth of the sub surface microcirculation, an optical clearing agent composed of 75% glycerol in aqueous solution was applied topically and kept in contact for 15 min. OCT intensity images were acquired from commercial research grade swept source OCT system (model OCT1300SS, Thorlabs Inc. USA). A 3D OCT scan of the fingertip was acquired over an area of 5x5 mm using 1024x1024 A-scans in approximately 70 s. The resulting volume was then processed using the cmOCT technique with a 7x7 kernel to provide a microcirculation map. We believe these results will demonstrate an enhanced security level over artificial fingertips. To the best of our knowledge, this is the first demonstration of imaging microcirculation map of the subsurface fingertip.

Stress in recrystallized quartz by electron backscatter diffraction mapping

NASA Astrophysics Data System (ADS)

Llana-Fúnez, S.

2017-07-01

The long-term state of stress at middle and lower crustal depths can be estimated through the study of the microstructure of exhumed rocks from active and/or ancient shear zones. Constitutive equations for deformation mechanisms in experimentally deformed rocks relate differential stress to the size of recrystallized grains. Cross et al. (2017) take advantage of electron backscatter diffraction mapping to systematically separate new recrystallized grains from host grains on the basis of the measurable lattice distorsion within the grains. They produce the first calibrated piezometer for quartz with this technique, reproducing within error a previous calibration based on optical microscopy.

Cosmology with the pairwise kinematic SZ effect: Calibration and validation using hydrodynamical simulations

NASA Astrophysics Data System (ADS)

Soergel, Bjoern; Saro, Alexandro; Giannantonio, Tommaso; Efstathiou, George; Dolag, Klaus

2018-05-01

We study the potential of the kinematic SZ effect as a probe for cosmology, focusing on the pairwise method. The main challenge is disentangling the cosmologically interesting mean pairwise velocity from the cluster optical depth and the associated uncertainties on the baryonic physics in clusters. Furthermore, the pairwise kSZ signal might be affected by internal cluster motions or correlations between velocity and optical depth. We investigate these effects using the Magneticum cosmological hydrodynamical simulations, one of the largest simulations of this kind performed to date. We produce tSZ and kSZ maps with an area of ≃ 1600 deg2, and the corresponding cluster catalogues with M500c ≳ 3 × 1013 h-1M⊙ and z ≲ 2. From these data sets we calibrate a scaling relation between the average Compton-y parameter and optical depth. We show that this relation can be used to recover an accurate estimate of the mean pairwise velocity from the kSZ effect, and that this effect can be used as an important probe of cosmology. We discuss the impact of theoretical and observational systematic effects, and find that further work on feedback models is required to interpret future high-precision measurements of the kSZ effect.

Planck and the reionization of the universe

NASA Astrophysics Data System (ADS)

Crill, Brendan

2016-03-01

Planck is the third-generation satellite aimed at measuring the cosmic microwave background, a relic of the hot big bang. Planck's temperature and polarization maps of the millimeter-wave sky have constrained parameters of the standard lambda-CDM model of cosmology to incredible precision, and have provided constraints on inflation in the very early universe. Planck's all-sky survey of polarization in seven frequency bands can remove contamination from nearby Galactic emission and constrain the optical depth of the reionized Universe, giving insight into the properties of the earliest star formation. The final 2016 data release from Planck will include a refined optical depth measurement using the full sensitivity of both the High Frequency and Low Frequency instruments. I present the status of the reionization measurement and discuss future prospects for further measurements of the early Universe with the CMB from Planck and future space and suborbital platforms.

Extraction of convective cloud parameters from Doppler Weather Radar MAX(Z) product using Image Processing Technique

NASA Astrophysics Data System (ADS)

Arunachalam, M. S.; Puli, Anil; Anuradha, B.

2016-07-01

In the present work continuous extraction of convective cloud optical information and reflectivity (MAX(Z) in dBZ) using online retrieval technique for time series data production from Doppler Weather Radar (DWR) located at Indian Meteorological Department, Chennai has been developed in MATLAB. Reflectivity measurements for different locations within the DWR range of 250 Km radii of circular disc area can be retrieved using this technique. It gives both time series reflectivity of point location and also Range Time Intensity (RTI) maps of reflectivity for the corresponding location. The Graphical User Interface (GUI) developed for the cloud reflectivity is user friendly; it also provides the convective cloud optical information such as cloud base height (CBH), cloud top height (CTH) and cloud optical depth (COD). This technique is also applicable for retrieving other DWR products such as Plan Position Indicator (Z, in dBZ), Plan Position Indicator (Z, in dBZ)-Close Range, Volume Velocity Processing (V, in knots), Plan Position Indicator (V, in m/s), Surface Rainfall Intensity (SRI, mm/hr), Precipitation Accumulation (PAC) 24 hrs at 0300UTC. Keywords: Reflectivity, cloud top height, cloud base, cloud optical depth

Cloud and aerosol optical depths

NASA Technical Reports Server (NTRS)

Pueschel, R. F.; Russell, P. B.; Ackerman, Thomas P.; Colburn, D. C.; Wrigley, R. C.; Spanner, M. A.; Livingston, J. M.

1988-01-01

An airborne Sun photometer was used to measure optical depths in clear atmospheres between the appearances of broken stratus clouds, and the optical depths in the vicinity of smokes. Results show that (human) activities can alter the chemical and optical properties of background atmospheres to affect their spectral optical depths. Effects of water vapor adsorption on aerosol optical depths are apparent, based on data of the water vapor absorption band centered around 940 nm. Smoke optical depths show increases above the background atmosphere by up to two orders of magnitude. When the total optical depths measured through clouds were corrected for molecular scattering and gaseous absorption by subtracting the total optical depths measured through the background atmosphere, the resultant values are lower than those of the background aerosol at short wavelengths. The spectral dependence of these cloud optical depths is neutral, however, in contrast to that of the background aerosol or the molecular atmosphere.

Planck intermediate results: XLVI. Reduction of large-scale systematic effects in HFI polarization maps and estimation of the reionization optical depth

DOE PAGES

Aghanim, N.; Ashdown, M.; Aumont, J.; ...

2016-12-12

This study describes the identification, modelling, and removal of previously unexplained systematic effects in the polarization data of the Planck High Frequency Instrument (HFI) on large angular scales, including new mapmaking and calibration procedures, new and more complete end-to-end simulations, and a set of robust internal consistency checks on the resulting maps. These maps, at 100, 143, 217, and 353 GHz, are early versions of those that will be released in final form later in 2016. The improvements allow us to determine the cosmic reionization optical depth τ using, for the first time, the low-multipole EE data from HFI, reducingmore » significantly the central value and uncertainty, and hence the upper limit. Two different likelihood procedures are used to constrain τ from two estimators of the CMB E- and B-mode angular power spectra at 100 and 143 GHz, after debiasing the spectra from a small remaining systematic contamination. These all give fully consistent results. A further consistency test is performed using cross-correlations derived from the Low Frequency Instrument maps of the Planck 2015 data release and the new HFI data. For this purpose, end-to-end analyses of systematic effects from the two instruments are used to demonstrate the near independence of their dominant systematic error residuals. The tightest result comes from the HFI-based τ posterior distribution using the maximum likelihood power spectrum estimator from EE data only, giving a value 0.055 ± 0.009. Finally, in a companion paper these results are discussed in the context of the best-fit PlanckΛCDM cosmological model and recent models of reionization.« less

Planck intermediate results: XLVI. Reduction of large-scale systematic effects in HFI polarization maps and estimation of the reionization optical depth

DOE Office of Scientific and Technical Information (OSTI.GOV)

Aghanim, N.; Ashdown, M.; Aumont, J.

This study describes the identification, modelling, and removal of previously unexplained systematic effects in the polarization data of the Planck High Frequency Instrument (HFI) on large angular scales, including new mapmaking and calibration procedures, new and more complete end-to-end simulations, and a set of robust internal consistency checks on the resulting maps. These maps, at 100, 143, 217, and 353 GHz, are early versions of those that will be released in final form later in 2016. The improvements allow us to determine the cosmic reionization optical depth τ using, for the first time, the low-multipole EE data from HFI, reducingmore » significantly the central value and uncertainty, and hence the upper limit. Two different likelihood procedures are used to constrain τ from two estimators of the CMB E- and B-mode angular power spectra at 100 and 143 GHz, after debiasing the spectra from a small remaining systematic contamination. These all give fully consistent results. A further consistency test is performed using cross-correlations derived from the Low Frequency Instrument maps of the Planck 2015 data release and the new HFI data. For this purpose, end-to-end analyses of systematic effects from the two instruments are used to demonstrate the near independence of their dominant systematic error residuals. The tightest result comes from the HFI-based τ posterior distribution using the maximum likelihood power spectrum estimator from EE data only, giving a value 0.055 ± 0.009. Finally, in a companion paper these results are discussed in the context of the best-fit PlanckΛCDM cosmological model and recent models of reionization.« less

Planck intermediate results. XLVI. Reduction of large-scale systematic effects in HFI polarization maps and estimation of the reionization optical depth

NASA Astrophysics Data System (ADS)

Planck Collaboration; Aghanim, N.; Ashdown, M.; Aumont, J.; Baccigalupi, C.; Ballardini, M.; Banday, A. J.; Barreiro, R. B.; Bartolo, N.; Basak, S.; Battye, R.; Benabed, K.; Bernard, J.-P.; Bersanelli, M.; Bielewicz, P.; Bock, J. J.; Bonaldi, A.; Bonavera, L.; Bond, J. R.; Borrill, J.; Bouchet, F. R.; Boulanger, F.; Bucher, M.; Burigana, C.; Butler, R. C.; Calabrese, E.; Cardoso, J.-F.; Carron, J.; Challinor, A.; Chiang, H. C.; Colombo, L. P. L.; Combet, C.; Comis, B.; Coulais, A.; Crill, B. P.; Curto, A.; Cuttaia, F.; Davis, R. J.; de Bernardis, P.; de Rosa, A.; de Zotti, G.; Delabrouille, J.; Delouis, J.-M.; Di Valentino, E.; Dickinson, C.; Diego, J. M.; Doré, O.; Douspis, M.; Ducout, A.; Dupac, X.; Efstathiou, G.; Elsner, F.; Enßlin, T. A.; Eriksen, H. K.; Falgarone, E.; Fantaye, Y.; Finelli, F.; Forastieri, F.; Frailis, M.; Fraisse, A. A.; Franceschi, E.; Frolov, A.; Galeotta, S.; Galli, S.; Ganga, K.; Génova-Santos, R. T.; Gerbino, M.; Ghosh, T.; González-Nuevo, J.; Górski, K. M.; Gratton, S.; Gruppuso, A.; Gudmundsson, J. E.; Hansen, F. K.; Helou, G.; Henrot-Versillé, S.; Herranz, D.; Hivon, E.; Huang, Z.; Ilić, S.; Jaffe, A. H.; Jones, W. C.; Keihänen, E.; Keskitalo, R.; Kisner, T. S.; Knox, L.; Krachmalnicoff, N.; Kunz, M.; Kurki-Suonio, H.; Lagache, G.; Lamarre, J.-M.; Langer, M.; Lasenby, A.; Lattanzi, M.; Lawrence, C. R.; Le Jeune, M.; Leahy, J. P.; Levrier, F.; Liguori, M.; Lilje, P. B.; López-Caniego, M.; Ma, Y.-Z.; Macías-Pérez, J. F.; Maggio, G.; Mangilli, A.; Maris, M.; Martin, P. G.; Martínez-González, E.; Matarrese, S.; Mauri, N.; McEwen, J. D.; Meinhold, P. R.; Melchiorri, A.; Mennella, A.; Migliaccio, M.; Miville-Deschênes, M.-A.; Molinari, D.; Moneti, A.; Montier, L.; Morgante, G.; Moss, A.; Mottet, S.; Naselsky, P.; Natoli, P.; Oxborrow, C. A.; Pagano, L.; Paoletti, D.; Partridge, B.; Patanchon, G.; Patrizii, L.; Perdereau, O.; Perotto, L.; Pettorino, V.; Piacentini, F.; Plaszczynski, S.; Polastri, L.; Polenta, G.; Puget, J.-L.; Rachen, J. P.; Racine, B.; Reinecke, M.; Remazeilles, M.; Renzi, A.; Rocha, G.; Rossetti, M.; Roudier, G.; Rubiño-Martín, J. A.; Ruiz-Granados, B.; Salvati, L.; Sandri, M.; Savelainen, M.; Scott, D.; Sirri, G.; Sunyaev, R.; Suur-Uski, A.-S.; Tauber, J. A.; Tenti, M.; Toffolatti, L.; Tomasi, M.; Tristram, M.; Trombetti, T.; Valiviita, J.; Van Tent, F.; Vibert, L.; Vielva, P.; Villa, F.; Vittorio, N.; Wandelt, B. D.; Watson, R.; Wehus, I. K.; White, M.; Zacchei, A.; Zonca, A.

2016-12-01

This paper describes the identification, modelling, and removal of previously unexplained systematic effects in the polarization data of the Planck High Frequency Instrument (HFI) on large angular scales, including new mapmaking and calibration procedures, new and more complete end-to-end simulations, and a set of robust internal consistency checks on the resulting maps. These maps, at 100, 143, 217, and 353 GHz, are early versions of those that will be released in final form later in 2016. The improvements allow us to determine the cosmic reionization optical depth τ using, for the first time, the low-multipole EE data from HFI, reducing significantly the central value and uncertainty, and hence the upper limit. Two different likelihood procedures are used to constrain τ from two estimators of the CMB E- and B-mode angular power spectra at 100 and 143 GHz, after debiasing the spectra from a small remaining systematic contamination. These all give fully consistent results. A further consistency test is performed using cross-correlations derived from the Low Frequency Instrument maps of the Planck 2015 data release and the new HFI data. For this purpose, end-to-end analyses of systematic effects from the two instruments are used to demonstrate the near independence of their dominant systematic error residuals. The tightest result comes from the HFI-based τ posterior distribution using the maximum likelihood power spectrum estimator from EE data only, giving a value 0.055 ± 0.009. In a companion paper these results are discussed in the context of the best-fit PlanckΛCDM cosmological model and recent models of reionization.

A 100-3000 GHz model of thermal dust emission observed by Planck, DIRBE and IRAS

NASA Astrophysics Data System (ADS)

Meisner, Aaron M.; Finkbeiner, Douglas P.

2015-01-01

We apply the Finkbeiner et al. (1999) two-component thermal dust emission model to the Planck HFI maps. This parametrization of the far-infrared dust spectrum as the sum of two modified blackbodies serves as an important alternative to the commonly adopted single modified blackbody (MBB) dust emission model. Analyzing the joint Planck/DIRBE dust spectrum, we show that two-component models provide a better fit to the 100-3000 GHz emission than do single-MBB models, though by a lesser margin than found by Finkbeiner et al. (1999) based on FIRAS and DIRBE. We also derive full-sky 6.1' resolution maps of dust optical depth and temperature by fitting the two-component model to Planck 217-857 GHz along with DIRBE/IRAS 100μm data. Because our two-component model matches the dust spectrum near its peak, accounts for the spectrum's flattening at millimeter wavelengths, and specifies dust temperature at 6.1' FWHM, our model provides reliable, high-resolution thermal dust emission foreground predictions from 100 to 3000 GHz. We find that, in diffuse sky regions, our two-component 100-217 GHz predictions are on average accurate to within 2.2%, while extrapolating the Planck Collaboration (2013) single-MBB model systematically underpredicts emission by 18.8% at 100 GHz, 12.6% at 143 GHz and 7.9% at 217 GHz. We calibrate our two-component optical depth to reddening, and compare with reddening estimates based on stellar spectra. We find the dominant systematic problems in our temperature/reddening maps to be zodiacal light on large angular scales and the cosmic infrared background anistropy on small angular scales. We have recently released maps and associated software utilities for obtaining thermal dust emission and reddening predictions using our Planck-based two-component model.

Aerosol Extinction Profile Mapping with Lognormal Distribution Based on MPL Data

NASA Astrophysics Data System (ADS)

Lin, T. H.; Lee, T. T.; Chang, K. E.; Lien, W. H.; Liu, G. R.; Liu, C. Y.

2017-12-01

This study intends to challenge the profile mapping of aerosol vertical distribution by mathematical function. With the similarity in distribution pattern, lognormal distribution is examined for mapping the aerosol extinction profile based on MPL (Micro Pulse LiDAR) in situ measurements. The variables of lognormal distribution are log mean (μ) and log standard deviation (σ), which will be correlated with the parameters of aerosol optical depht (AOD) and planetary boundary layer height (PBLH) associated with the altitude of extinction peak (Mode) defined in this study. On the base of 10 years MPL data with single peak, the mapping results showed that the mean error of Mode and σ retrievals are 16.1% and 25.3%, respectively. The mean error of σ retrieval can be reduced to 16.5% under the cases of larger distance between PBLH and Mode. The proposed method is further applied to MODIS AOD product in mapping extinction profile for the retrieval of PM2.5 in terms of satellite observations. The results indicated well agreement between retrievals and ground measurements when aerosols under 525 meters are well-mixed. The feasibility of proposed method to satellite remote sensing is also suggested by the case study. Keyword: Aerosol extinction profile, Lognormal distribution, MPL, Planetary boundary layer height (PBLH), Aerosol optical depth (AOD), Mode

Adaptive Optics Images of the Galactic Center: Using Empirical Noise-maps to Optimize Image Analysis

NASA Astrophysics Data System (ADS)

Albers, Saundra; Witzel, Gunther; Meyer, Leo; Sitarski, Breann; Boehle, Anna; Ghez, Andrea M.

2015-01-01

Adaptive Optics images are one of the most important tools in studying our Galactic Center. In-depth knowledge of the noise characteristics is crucial to optimally analyze this data. Empirical noise estimates - often represented by a constant value for the entire image - can be greatly improved by computing the local detector properties and photon noise contributions pixel by pixel. To comprehensively determine the noise, we create a noise model for each image using the three main contributors—photon noise of stellar sources, sky noise, and dark noise. We propagate the uncertainties through all reduction steps and analyze the resulting map using Starfinder. The estimation of local noise properties helps to eliminate fake detections while improving the detection limit of fainter sources. We predict that a rigorous understanding of noise allows a more robust investigation of the stellar dynamics in the center of our Galaxy.

Does variation in mineral composition alter the short-wave light scattering properties of desert dust aerosol?

NASA Astrophysics Data System (ADS)

Smith, Andrew J. A.; Grainger, Roy G.

2014-01-01

Mineral dust aerosol is a major component of natural airborne particulates. Using satellite measurements from the visible and near-infrared, there is insufficient information to retrieve a full microphysical and chemical description of an aerosol distribution. As such, refractive index is one of many parameters that must be implicitly assumed in order to obtain an optical depth retrieval. This is essentially a proxy for the dust mineralogy. Using a global soil map, it is shown that as long as a reasonable refractive index for dust is assumed, global dust variability is unlikely to cause significant variation in the optical properties of a dust aerosol distribution in the short-wave, and so should not greatly affect retrievals of mineral dust aerosol from space by visible and near-infrared radiometers. Errors in aerosol optical depth due to this variation are expected to be ≲ 1 %. The work is framed around the ORAC AATSR aerosol retrieval, but is equally applicable to similar satellite retrievals. In this case, variations in the top-of-atmosphere reflectance caused by mineral variation are within the noise limits of the instrument.

"Almost Darks": HI Mapping and Optical Analysis

NASA Astrophysics Data System (ADS)

Singer, Quinton; Ball, Catie; Cannon, John M.; Leisman, Luke; Haynes, Martha P.; Adams, Elizabeth A.; Bernal Neira, David; Giovanelli, Riccardo; Hallenbeck, Gregory L.; Janesh, William; Janowiecki, Steven; Jozsa, Gyula; Rhode, Katherine L.; Salzer, John Joseph

2017-01-01

We present VLA HI imaging of the "Almost Dark" galaxies AGC 227982, AGC 268363, and AGC 219533. Selected from the ALFALFA survey, "Almost Dark" galaxies have significant HI reservoirs but lack an obvious stellar counterpart in survey-depth ground-based optical imaging. These three HI-rich objects harbor some of the most extreme levels of suppressed star formation amongst the isolated sources in the ALFALFA catalog. Our new multi-configuration, high angular (~20") and spectral (1.7 km/s) resolution HI observations produce spatially resolved column density and velocity distribution moment maps. We compare these images to Sloan Digitized Sky Survey (SDSS) optical images. By localizing the HI gas, we identify previously unknown optical components (offset from the ALFALFA pointing center) for AGC 227982 and AGC 268363, and confirm the association with a very low surface brightness stellar counterpart for AGC 219533. Baryonic masses are derived from VLA flux integral values and ALFALFA distance estimates, giving answers consistent with those derived from ALFALFA fluxes. All three sources appear to have fairly regular HI morphologies and show evidence of ordered rotation.Support for this work was provided by NSF grant 1211683 to JMC at Macalester College.

Optical Design and Sensitivity of the Probe of Inflation and Cosmic Origins

NASA Astrophysics Data System (ADS)

Young, Karl S.; Hanany, Shaul; Wen, Qi

2018-01-01

The Probe of Inflation and Cosmic Origins (PICO) is a NASA probe-class mission concept being studied in preparation for the 2020 Astronomy and Astrophysics Decadal Survey. PICO will detect, or place new limits on, the energy scale of inflation and the physics of quantum gravity, determine the effective number of neutrino species and constrain the sum of neutrino masses, measure the optical depth to reionization to the cosmic variance limit, and shed new light on the role of magnetic fields in galactic evolution and star formation by making polarimetric maps of the full mm-wave sky with sensitivity 70 times higher than the Planck space mission. The maps made by PICO will provide a catalog of thousands of new proto clusters and infrared galaxies as well as tens of thousands of galaxy clusters which will further constrain cosmological parameters.PICO will have a 1.4 meter aperture telescope with 21 bands from 20 to 800 Ghz. We show the current PICO optics and discuss trade-offs between types of optical systems, limits imposed by scan strategies, and maximizing the number of detectors on sky. We present the instrument’s focal plane and the expected mission sensitivity.

Real-time Fourier transformation of lightwave spectra and application in optical reflectometry.

PubMed

Malacarne, Antonio; Park, Yongwoo; Li, Ming; LaRochelle, Sophie; Azaña, José

2015-12-14

We propose and experimentally demonstrate a fiber-optics scheme for real-time analog Fourier transform (FT) of a lightwave energy spectrum, such that the output signal maps the FT of the spectrum of interest along the time axis. This scheme avoids the need for analog-to-digital conversion and subsequent digital signal post-processing of the photo-detected spectrum, thus being capable of providing the desired FT processing directly in the optical domain at megahertz update rates. The proposed concept is particularly attractive for applications requiring FT analysis of optical spectra, such as in many optical Fourier-domain reflectrometry (OFDR), interferometry, spectroscopy and sensing systems. Examples are reported to illustrate the use of the method for real-time OFDR, where the target axial-line profile is directly observed in a single-shot oscilloscope trace, similarly to a time-of-flight measurement, but with a resolution and depth of range dictated by the underlying interferometry scheme.

Eyjafjallajokull Volcano Plume Particle-Type Characterization from Space-Based Multi-angle Imaging

NASA Technical Reports Server (NTRS)

Kahn, Ralph A.; Limbacher, James

2012-01-01

The Multi-angle Imaging SpectroRadiometer (MISR) Research Aerosol algorithm makes it possible to study individual aerosol plumes in considerable detail. From the MISR data for two optically thick, near-source plumes from the spring 2010 eruption of the Eyjafjallaj kull volcano, we map aerosol optical depth (AOD) gradients and changing aerosol particle types with this algorithm; several days downwind, we identify the occurrence of volcanic ash particles and retrieve AOD, demonstrating the extent and the limits of ash detection and mapping capability with the multi-angle, multi-spectral imaging data. Retrieved volcanic plume AOD and particle microphysical properties are distinct from background values near-source, as well as for overwater cases several days downwind. The results also provide some indication that as they evolve, plume particles brighten, and average particle size decreases. Such detailed mapping offers context for suborbital plume observations having much more limited sampling. The MISR Standard aerosol product identified similar trends in plume properties as the Research algorithm, though with much smaller differences compared to background, and it does not resolve plume structure. Better optical analogs of non-spherical volcanic ash, and coincident suborbital data to validate the satellite retrieval results, are the factors most important for further advancing the remote sensing of volcanic ash plumes from space.

NEUTRAL HYDROGEN OPTICAL DEPTH NEAR STAR-FORMING GALAXIES AT z Almost-Equal-To 2.4 IN THE KECK BARYONIC STRUCTURE SURVEY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rakic, Olivera; Schaye, Joop; Steidel, Charles C.

We study the interface between galaxies and the intergalactic medium by measuring the absorption by neutral hydrogen in the vicinity of star-forming galaxies at z Almost-Equal-To 2.4. Our sample consists of 679 rest-frame UV-selected galaxies with spectroscopic redshifts that have impact parameters <2 (proper) Mpc to the line of sight of one of the 15 bright, background QSOs and that fall within the redshift range of its Ly{alpha} forest. We present the first two-dimensional maps of the absorption around galaxies, plotting the median Ly{alpha} pixel optical depth as a function of transverse and line-of-sight separation from galaxies. The Ly{alpha} opticalmore » depths are measured using an automatic algorithm that takes advantage of all available Lyman series lines. The median optical depth, and hence the median density of atomic hydrogen, drops by more than an order of magnitude around 100 kpc, which is similar to the virial radius of the halos thought to host the galaxies. The median remains enhanced, at the >3{sigma} level, out to at least 2.8 Mpc (i.e., >9 comoving Mpc), but the scatter at a given distance is large compared with the median excess optical depth, suggesting that the gas is clumpy. Within 100 (200) kpc, and over {+-}165 km s{sup -1}, the covering fraction of gas with Ly{alpha} optical depth greater than unity is 100{sup +0}{sub -32}% (66% {+-} 16%). Absorbers with {tau}{sub Ly{alpha}} > 0.1 are typically closer to galaxies than random. The mean galaxy overdensity around absorbers increases with the optical depth and also as the length scale over which the galaxy overdensity is evaluated is decreased. Absorbers with {tau}{sub Ly{alpha}} {approx} 1 reside in regions where the galaxy number density is close to the cosmic mean on scales {>=}0.25 Mpc. We clearly detect two types of redshift space anisotropies. On scales <200 km s{sup -1}, or <1 Mpc, the absorption is stronger along the line of sight than in the transverse direction. This 'finger of God' effect may be due to redshift errors, but is probably dominated by gas motions within or very close to the halos. On the other hand, on scales of 1.4-2.0 Mpc the absorption is compressed along the line of sight (with >3{sigma} significance), an effect that we attribute to large-scale infall (i.e., the Kaiser effect).« less

Automated sea floor extraction from underwater video

NASA Astrophysics Data System (ADS)

Kelly, Lauren; Rahmes, Mark; Stiver, James; McCluskey, Mike

2016-05-01

Ocean floor mapping using video is a method to simply and cost-effectively record large areas of the seafloor. Obtaining visual and elevation models has noteworthy applications in search and recovery missions. Hazards to navigation are abundant and pose a significant threat to the safety, effectiveness, and speed of naval operations and commercial vessels. This project's objective was to develop a workflow to automatically extract metadata from marine video and create image optical and elevation surface mosaics. Three developments made this possible. First, optical character recognition (OCR) by means of two-dimensional correlation, using a known character set, allowed for the capture of metadata from image files. Second, exploiting the image metadata (i.e., latitude, longitude, heading, camera angle, and depth readings) allowed for the determination of location and orientation of the image frame in mosaic. Image registration improved the accuracy of mosaicking. Finally, overlapping data allowed us to determine height information. A disparity map was created using the parallax from overlapping viewpoints of a given area and the relative height data was utilized to create a three-dimensional, textured elevation map.

NGC 2024: Multi-wavelength Infrared and Radio Observations

NASA Technical Reports Server (NTRS)

Smith, H. A.; Fischer, J.; Geballe, T. R.; Thronson, H. A., Jr.; Johnston, K. J.; Schwartz, P. R.; Wilson, T. L.; Crutcher, R. M.; Henkel, C.; Bieging, J.

1984-01-01

A series of far-infrared maps obtained on the KAO find the total IR luminosity of NGC 2024 is to the 4th power L, and show a peak in flux density and optical depth about 1' south of IRS 2. High resolution spectra of IRS 2 in Brackett alfa and Pfund gamma indicate the presence of an optically thick wind with M approx. 7 x 10 to the minus 7 power M sub yr to minus 1 power, from which we infer that IRS 2 is unable to supply the luminosity observed. A six centimeter continuum map peaks near the location of the far-infrared peak and confirms it as a likely site for a source to provide this luminosity. Maps in HCN, CS, and H2CO show the gas is dense in the direction of the far IR peak. Velocity analysis shows the H2 region created by the far IR source and IRS 2 forms an expanding bubble in front of which the H2CO is seen in absorption, and which is bounded in the south and behind by dense material.

Field mappers for laser material processing

NASA Astrophysics Data System (ADS)

Blair, Paul; Currie, Matthew; Trela, Natalia; Baker, Howard J.; Murphy, Eoin; Walker, Duncan; McBride, Roy

2016-03-01

The native shape of the single-mode laser beam used for high power material processing applications is circular with a Gaussian intensity profile. Manufacturers are now demanding the ability to transform the intensity profile and shape to be compatible with a new generation of advanced processing applications that require much higher precision and control. We describe the design, fabrication and application of a dual-optic, beam-shaping system for single-mode laser sources, that transforms a Gaussian laser beam by remapping - hence field mapping - the intensity profile to create a wide variety of spot shapes including discs, donuts, XY separable and rotationally symmetric. The pair of optics transform the intensity distribution and subsequently flatten the phase of the beam, with spot sizes and depth of focus close to that of a diffraction limited beam. The field mapping approach to beam-shaping is a refractive solution that does not add speckle to the beam, making it ideal for use with single mode laser sources, moving beyond the limits of conventional field mapping in terms of spot size and achievable shapes. We describe a manufacturing process for refractive optics in fused silica that uses a freeform direct-write process that is especially suited for the fabrication of this type of freeform optic. The beam-shaper described above was manufactured in conventional UV-fused silica using this process. The fabrication process generates a smooth surface (<1nm RMS), leading to laser damage thresholds of greater than 100J/cm2, which is well matched to high power laser sources. Experimental verification of the dual-optic filed mapper is presented.

Neutral Hydrogen Optical Depth near Star-forming Galaxies at z ≈ 2.4 in the Keck Baryonic Structure Survey

NASA Astrophysics Data System (ADS)

Rakic, Olivera; Schaye, Joop; Steidel, Charles C.; Rudie, Gwen C.

2012-06-01

We study the interface between galaxies and the intergalactic medium by measuring the absorption by neutral hydrogen in the vicinity of star-forming galaxies at z ≈ 2.4. Our sample consists of 679 rest-frame UV-selected galaxies with spectroscopic redshifts that have impact parameters <2 (proper) Mpc to the line of sight of one of the 15 bright, background QSOs and that fall within the redshift range of its Lyα forest. We present the first two-dimensional maps of the absorption around galaxies, plotting the median Lyα pixel optical depth as a function of transverse and line-of-sight separation from galaxies. The Lyα optical depths are measured using an automatic algorithm that takes advantage of all available Lyman series lines. The median optical depth, and hence the median density of atomic hydrogen, drops by more than an order of magnitude around 100 kpc, which is similar to the virial radius of the halos thought to host the galaxies. The median remains enhanced, at the >3σ level, out to at least 2.8 Mpc (i.e., >9 comoving Mpc), but the scatter at a given distance is large compared with the median excess optical depth, suggesting that the gas is clumpy. Within 100 (200) kpc, and over ±165 km s-1, the covering fraction of gas with Lyα optical depth greater than unity is 100+0 - 32% (66% ± 16%). Absorbers with τLyα > 0.1 are typically closer to galaxies than random. The mean galaxy overdensity around absorbers increases with the optical depth and also as the length scale over which the galaxy overdensity is evaluated is decreased. Absorbers with τLyα ~ 1 reside in regions where the galaxy number density is close to the cosmic mean on scales >=0.25 Mpc. We clearly detect two types of redshift space anisotropies. On scales <200 km s-1, or <1 Mpc, the absorption is stronger along the line of sight than in the transverse direction. This "finger of God" effect may be due to redshift errors, but is probably dominated by gas motions within or very close to the halos. On the other hand, on scales of 1.4-2.0 Mpc the absorption is compressed along the line of sight (with >3σ significance), an effect that we attribute to large-scale infall (i.e., the Kaiser effect). Based on data obtained at the W. M. Keck Observatory, which is operated as a scientific partnership among the California Institute of Technology, the University of California, and NASA, and was made possible by the generous financial support of the W. M. Keck Foundation.

Video stereolization: combining motion analysis with user interaction.

PubMed

Liao, Miao; Gao, Jizhou; Yang, Ruigang; Gong, Minglun

2012-07-01

We present a semiautomatic system that converts conventional videos into stereoscopic videos by combining motion analysis with user interaction, aiming to transfer as much as possible labeling work from the user to the computer. In addition to the widely used structure from motion (SFM) techniques, we develop two new methods that analyze the optical flow to provide additional qualitative depth constraints. They remove the camera movement restriction imposed by SFM so that general motions can be used in scene depth estimation-the central problem in mono-to-stereo conversion. With these algorithms, the user's labeling task is significantly simplified. We further developed a quadratic programming approach to incorporate both quantitative depth and qualitative depth (such as these from user scribbling) to recover dense depth maps for all frames, from which stereoscopic view can be synthesized. In addition to visual results, we present user study results showing that our approach is more intuitive and less labor intensive, while producing 3D effect comparable to that from current state-of-the-art interactive algorithms.

Measurements of the pairwise kinematic Sunyaev-Zel'dovich effect with the Atacama Cosmology Telescope and future surveys

NASA Astrophysics Data System (ADS)

Vavagiakis, Eve Marie; De Bernardis, Francesco; Aiola, Simone; Battaglia, Nicholas; Niemack, Michael D.; ACTPol Collaboration

2017-06-01

We have made improved measurements of the kinematic Sunyaev-Zel’dovich (kSZ) effect using data from the Atacama Cosmology Telescope (ACT) and the Baryon Oscillation Spectroscopic Survey (BOSS). We used a map of the Cosmic Microwave Background (CMB) from two seasons of observations each by ACT and the Atacama Cosmology Telescope Polarimeter (ACTPol) receiver. We evaluated the mean pairwise baryon momentum associated with the positions of 50,000 bright galaxies in the BOSS DR11 Large Scale Structure catalog via 600 square degrees of overlapping sky area. The measurement of the kSZ signal arising from the large-scale motions of clusters was made by fitting data to an analytical model. The free parameter of the fit determined the optical depth to microwave photon scattering for the cluster sample. We estimated the covariance matrix of the mean pairwise momentum as a function of galaxy separation using CMB simulations, jackknife evaluation, and bootstrap estimates. The most conservative simulation-based uncertainties gave signal-to-noise estimates between 3.6 and 4.1 for various luminosity cuts. Additionally, we explored a novel approach to estimating cluster optical depths from the average thermal Sunyaev-Zel’dovich (tSZ) signal at the BOSS DR11 catalog positions. Our results were broadly consistent with those obtained from the kSZ signal. In the future, the tSZ signal may provide a valuable probe of cluster optical depths, enabling the extraction of velocities from the kSZ sourced mean pairwise momenta. New CMB maps from three seasons of ACTPol observations with multi-frequency coverage overlap with nearly four times as many DR11 sources and promise to improve statistics and systematics for SZ measurements. With these and other upcoming data, the pairwise kSZ signal is poised to become a powerful new cosmological tool, able to probe large physical scales to inform neutrino physics and test models of modified gravity and dark energy.

A novel automated method for doing registration and 3D reconstruction from multi-modal RGB/IR image sequences

NASA Astrophysics Data System (ADS)

Kirby, Richard; Whitaker, Ross

2016-09-01

In recent years, the use of multi-modal camera rigs consisting of an RGB sensor and an infrared (IR) sensor have become increasingly popular for use in surveillance and robotics applications. The advantages of using multi-modal camera rigs include improved foreground/background segmentation, wider range of lighting conditions under which the system works, and richer information (e.g. visible light and heat signature) for target identification. However, the traditional computer vision method of mapping pairs of images using pixel intensities or image features is often not possible with an RGB/IR image pair. We introduce a novel method to overcome the lack of common features in RGB/IR image pairs by using a variational methods optimization algorithm to map the optical flow fields computed from different wavelength images. This results in the alignment of the flow fields, which in turn produce correspondences similar to those found in a stereo RGB/RGB camera rig using pixel intensities or image features. In addition to aligning the different wavelength images, these correspondences are used to generate dense disparity and depth maps. We obtain accuracies similar to other multi-modal image alignment methodologies as long as the scene contains sufficient depth variations, although a direct comparison is not possible because of the lack of standard image sets from moving multi-modal camera rigs. We test our method on synthetic optical flow fields and on real image sequences that we created with a multi-modal binocular stereo RGB/IR camera rig. We determine our method's accuracy by comparing against a ground truth.

A Long-term Record of Saharan Dust Aerosol Properties from TOMS Observations: Optical Depth and Single Scattering Albedo

NASA Technical Reports Server (NTRS)

Torres, Omar; Bhartia, P. K.; Herman, J. R.; Einaudi, Franco (Technical Monitor)

2000-01-01

The interaction between the strong Rayleigh scattering in the near UV spectral region (330-380 nm) and the processes of aerosol absorption and scattering, produce a clear spectral signal in the upwelling radiance at the top of the atmosphere. This interaction is the basis of the TOMS (Total Ozone Mapping Spectrometer) aerosol retrieval technique that can be used for their characterization and to differentiate non-absorbing sulfates from strongly UV-absorbing aerosols such as mineral dust. For absorbing aerosols, the characterization is in terms of the optical depth and single scattering albedo with assumptions about the aerosol plume height. The results for non-absorbing aerosols are not dependent on plume height. Although iron compounds represent only between 5% to 8% of desert dust aerosol mass, hematite (Fe2O3) accounts for most of the near UV absorption. Because of the large ultraviolet absorption characteristic of hematite, the near UV method of aerosol sensing is especially suited for the detection and characterization of desert dust aerosols. Using the combined record of near UV measurements by the Nimbus7 (1978-1992) and Earth Probe (1996-present) TOMS instruments, a global longterm climatology of near UV optical depth and single scattering albedo has been produced. The multi-year long record of mineral aerosol properties over the area of influence of the Saharan desert, will be discussed.

An Extinction Probe Through the HD 107146 Debris Ring: Taking Unique Advantage of a Background Galaxy Transit

NASA Astrophysics Data System (ADS)

Schneider, Glenn

2016-10-01

We propose a 3-cycle GO program utilizing a total of HST 30 orbits to directly measure and map the line-of-sight optical depth through the brightest sector of the HD 107146 solar-analog debris ring by ring-transit differential photometry of a bright (compared to the disk), spatially extended, background galaxy. We will advantageously exploit its serendipitously unique and experiment-enabling high proper motion reflex trajectory w.r.t. the galaxy back-lighting a sectional slice the exoplanetary debris system (EDS) with a 2D grid of multiple sight-lines through the nearly face-on disk over time. These measures (the only opportunity for such in remaining HST lifetime) will uniquely provide unambiguous extinction/optical depth constraints to better elucidate the physical properties of the debris particles in this otherwise well studied EDS. With these and prior data we will: (a) disambiguate inferred particle spatial, size, and mass density distributions otherwise conflated with debris material optical property dependencies, (b) better constrain the posited pathways for planetary debris dust production mechanisms in EDSs (e.g., catastrophic collisions of parent bodies, dust-production cascades, cratering events, etc.) and (c) search for and discriminated between clumps , bumps , and clouds of collisional debris of varying particle (and mass) densities. This investigation was enabled in forethought by mapping the galaxy surface brightness out-of-transit in a comprehensive 2011 precursor study (HST GO/12228) using exactly the same STIS instrumental configuration with multi-roll PSF template subtracted coronagraphy we propose for the upcoming ring transit opportunity.

An Extinction Probe Through the HD 107146 Debris Ring: Taking Unique Advantage of a Background Galaxy Transit

NASA Astrophysics Data System (ADS)

Schneider, Glenn

2017-08-01

We propose a 3-cycle GO program utilizing a total of HST 30 orbits to directly measure and map the line-of-sight optical depth through the brightest sector of the HD 107146 solar-analog debris ring by ring-transit differential photometry of a bright (compared to the disk), spatially extended, background galaxy. We will advantageously exploit its serendipitously unique and experiment-enabling high proper motion reflex trajectory w.r.t. the galaxy back-lighting a sectional slice the exoplanetary debris system (EDS) with a 2D grid of multiple sight-lines through the nearly face-on disk over time. These measures (the only opportunity for such in remaining HST lifetime) will uniquely provide unambiguous extinction/optical depth constraints to better elucidate the physical properties of the debris particles in this otherwise well studied EDS. With these and prior data we will: (a) disambiguate inferred particle spatial, size, and mass density distributions otherwise conflated with debris material optical property dependencies, (b) better constrain the posited pathways for planetary debris dust production mechanisms in EDSs (e.g., catastrophic collisions of parent bodies, dust-production cascades, cratering events, etc.) and (c) search for and discriminated between clumps , bumps , and clouds of collisional debris of varying particle (and mass) densities. This investigation was enabled in forethought by mapping the galaxy surface brightness out-of-transit in a comprehensive 2011 precursor study (HST GO/12228) using exactly the same STIS instrumental configuration with multi-roll PSF template subtracted coronagraphy we propose for the upcoming ring transit opportunity.

Global to Microscale Evolution of the Pinatubo Volcanic Aerosol Derived from Diverse Measurements and Analyses

NASA Technical Reports Server (NTRS)

Russell, P. B.; Livingston, J. M.; Pueschel, R. F.; Bauman, J. J.; Pollack, J. B.; Brooks, S. L.; Hamill, P.; Thomason, L. W.; Stowe, L. L.; Deshler, T.;

Method and system for processing optical elements using magnetorheological finishing

DOEpatents

Menapace, Joseph Arthur; Schaffers, Kathleen Irene; Bayramian, Andrew James; Molander, William A

2012-09-18

A method of finishing an optical element includes mounting the optical element in an optical mount having a plurality of fiducials overlapping with the optical element and obtaining a first metrology map for the optical element and the plurality of fiducials. The method also includes obtaining a second metrology map for the optical element without the plurality of fiducials, forming a difference map between the first metrology map and the second metrology map, and aligning the first metrology map and the second metrology map. The method further includes placing mathematical fiducials onto the second metrology map using the difference map to form a third metrology map and associating the third metrology map to the optical element. Moreover, the method includes mounting the optical element in the fixture in an MRF tool, positioning the optical element in the fixture; removing the plurality of fiducials, and finishing the optical element.

Multi-distance diffuse optical spectroscopy with a single optode via hypotrochoidal scanning.

PubMed

Applegate, Matthew B; Roblyer, Darren

2018-02-15

Frequency-domain diffuse optical spectroscopy (FD-DOS) is an established technique capable of determining optical properties and chromophore concentrations in biological tissue. Most FD-DOS systems use either manually positioned, handheld probes or complex arrays of source and detector fibers to acquire data from many tissue locations, allowing for the generation of 2D or 3D maps of tissue. Here, we present a new method to rapidly acquire a wide range of source-detector (SD) separations by mechanically scanning a single SD pair. The source and detector fibers are mounted on a scan head that traces a hypotrochoidal pattern over the sample that, when coupled with a high-speed FD-DOS system, enables the rapid collection of dozens of SD separations for depth-resolved imaging. We demonstrate that this system has an average error of 4±2.6% in absorption and 2±1.8% in scattering across all SD separations. Additionally, by linearly translating the device, the size and location of an absorbing inhomogeneity can be determined through the generation of B-scan images in a manner conceptually analogous to ultrasound imaging. This work demonstrates the potential of single optode diffuse optical scanning for depth resolved visualization of heterogeneous biological tissues at near real-time rates.

A Unified Picture of Pinatubo Aerosol Global-to Micro-Scale Evolution, From Space, Air, and Ground Measurements

NASA Technical Reports Server (NTRS)

Russell, Philip B.; Livingston, J. M.; Pueschel, R. F.; Pollack, J. B.; Brooks, S.; Hamill, P.; Hughes, J.; Thomason, L.; Stowe, L.; Deshler, T.;

Development of HiLo Microscope and its use in In-Vivo Applications

NASA Astrophysics Data System (ADS)

Patel, Shreyas J.

The functionality of achieving optical sectioning in biomedical research is invaluable as it allows for visualization of a biological sample at different depths while being free of background scattering. Most current microscopy techniques that offer optical sectioning, unfortunately, require complex instrumentation and thus are generally costly. HiLo microscopy, on the other hand, offers the same functionality and advantage at a relatively low cost. Hence, the work described in this thesis involves the design, build, and application of a HiLo microscope. More specifically, a standalone HiLo microscope was built in addition to implementing HiLo microscopy on a standard fluorescence microscope. In HiLo microscopy, optical sectioning is achieved by acquiring two different types of images per focal plane. One image is acquired under uniform illumination and the other is acquired under speckle illumination. These images are processed using an algorithm that extracts in-focus information and removes features and glare that occur as a result of background fluorescence. To show the benefits of the HiLo microscopy, several imaging experiments on various samples were performed under a HiLo microscope and compared against a traditional fluorescence microscope and a confocal microscope, which is considered the gold standard in optical imaging. In-vitro and ex-vivo imaging was performed on a set of pollen grains, and optically cleared mouse brain and heart slices. Each of these experiments showed great reduction in background scattering at different depths under HiLo microscopy. More importantly, HiLo imaging of optically cleared heart slice demonstrated emergence of different vasculature at different depths. Reduction of out-of-focus light increased the spatial resolution and allowed better visualization of capillary vessels. Furthermore, HiLo imaging was tested in an in-vivo model of a rodent dorsal window chamber model. When imaging the same sample under confocal microscope, the results were comparable between the two modalities. Additionally, a method of achieving blood flow maps at different depth using a combination of HiLo and LSI imaging is also discussed. The significance of this combined technique could help categorize blood flow to particular depths; this can help improve outcomes of medical treatments such pulse dye laser and photodynamic therapy treatments.

In vivo optical elastography: stress and strain imaging of human skin lesions

NASA Astrophysics Data System (ADS)

Es'haghian, Shaghayegh; Gong, Peijun; Kennedy, Kelsey M.; Wijesinghe, Philip; Sampson, David D.; McLaughlin, Robert A.; Kennedy, Brendan F.

2015-03-01

Probing the mechanical properties of skin at high resolution could aid in the assessment of skin pathologies by, for example, detecting the extent of cancerous skin lesions and assessing pathology in burn scars. Here, we present two elastography techniques based on optical coherence tomography (OCT) to probe the local mechanical properties of skin. The first technique, optical palpation, is a high-resolution tactile imaging technique, which uses a complaint silicone layer positioned on the tissue surface to measure spatially-resolved stress imparted by compressive loading. We assess the performance of optical palpation, using a handheld imaging probe on a skin-mimicking phantom, and demonstrate its use on human skin. The second technique is a strain imaging technique, phase-sensitive compression OCE that maps depth-resolved mechanical variations within skin. We show preliminary results of in vivo phase-sensitive compression OCE on a human skin lesion.

Improved measurement of vibration amplitude in dynamic optical coherence elastography

PubMed Central

Kennedy, Brendan F.; Wojtkowski, Maciej; Szkulmowski, Maciej; Kennedy, Kelsey M.; Karnowski, Karol; Sampson, David D.

2012-01-01

Abstract: Optical coherence elastography employs optical coherence tomography (OCT) to measure the displacement of tissues under load and, thus, maps the resulting strain into an image, known as an elastogram. We present a new improved method to measure vibration amplitude in dynamic optical coherence elastography. The tissue vibration amplitude caused by sinusoidal loading is measured from the spread of the Doppler spectrum, which is extracted using joint spectral and time domain signal processing. At low OCT signal-to-noise ratio (SNR), the method provides more accurate vibration amplitude measurements than the currently used phase-sensitive method. For measurements performed on a mirror at OCT SNR = 5 dB, our method introduces <3% error, compared to >20% using the phase-sensitive method. We present elastograms of a tissue-mimicking phantom and excised porcine tissue that demonstrate improvements, including a 50% increase in the depth range of reliable vibration amplitude measurement. PMID:23243565

Imaging and characterizing shear wave and shear modulus under orthogonal acoustic radiation force excitation using OCT Doppler variance method.

PubMed

Zhu, Jiang; Qu, Yueqiao; Ma, Teng; Li, Rui; Du, Yongzhao; Huang, Shenghai; Shung, K Kirk; Zhou, Qifa; Chen, Zhongping

2015-05-01

We report on a novel acoustic radiation force orthogonal excitation optical coherence elastography (ARFOE-OCE) technique for imaging shear wave and quantifying shear modulus under orthogonal acoustic radiation force (ARF) excitation using the optical coherence tomography (OCT) Doppler variance method. The ARF perpendicular to the OCT beam is produced by a remote ultrasonic transducer. A shear wave induced by ARF excitation propagates parallel to the OCT beam. The OCT Doppler variance method, which is sensitive to the transverse vibration, is used to measure the ARF-induced vibration. For analysis of the shear modulus, the Doppler variance method is utilized to visualize shear wave propagation instead of Doppler OCT method, and the propagation velocity of the shear wave is measured at different depths of one location with the M scan. In order to quantify shear modulus beyond the OCT imaging depth, we move ARF to a deeper layer at a known step and measure the time delay of the shear wave propagating to the same OCT imaging depth. We also quantitatively map the shear modulus of a cross-section in a tissue-equivalent phantom after employing the B scan.

Low-resolution mapping of the effective attenuation coefficient of the human head: a multidistance approach applied to high-density optical recordings

PubMed Central

Chiarelli, Antonio M.; Maclin, Edward L.; Low, Kathy A.; Fantini, Sergio; Fabiani, Monica; Gratton, Gabriele

2017-01-01

Abstract. Near infrared (NIR) light has been widely used for measuring changes in hemoglobin concentration in the human brain (functional NIR spectroscopy, fNIRS). fNIRS is based on the differential measurement and estimation of absorption perturbations, which, in turn, are based on correctly estimating the absolute parameters of light propagation. To do so, it is essential to accurately characterize the baseline optical properties of tissue (absorption and reduced scattering coefficients). However, because of the diffusive properties of the medium, separate determination of absorption and scattering across the head is challenging. The effective attenuation coefficient (EAC), which is proportional to the geometric mean of absorption and reduced scattering coefficients, can be estimated in a simpler fashion by multidistance light decay measurements. EAC mapping could be of interest for the scientific community because of its absolute information content, and because light propagation is governed by the EAC for source–detector distances exceeding 1 cm, which sense depths extending beyond the scalp and skull layers. Here, we report an EAC mapping procedure that can be applied to standard fNIRS recordings, yielding topographic maps with 2- to 3-cm resolution. Application to human data indicates the importance of venous sinuses in determining regional EAC variations, a factor often overlooked. PMID:28466026

Low-resolution mapping of the effective attenuation coefficient of the human head: a multidistance approach applied to high-density optical recordings.

PubMed

Chiarelli, Antonio M; Maclin, Edward L; Low, Kathy A; Fantini, Sergio; Fabiani, Monica; Gratton, Gabriele

2017-04-01

Near infrared (NIR) light has been widely used for measuring changes in hemoglobin concentration in the human brain (functional NIR spectroscopy, fNIRS). fNIRS is based on the differential measurement and estimation of absorption perturbations, which, in turn, are based on correctly estimating the absolute parameters of light propagation. To do so, it is essential to accurately characterize the baseline optical properties of tissue (absorption and reduced scattering coefficients). However, because of the diffusive properties of the medium, separate determination of absorption and scattering across the head is challenging. The effective attenuation coefficient (EAC), which is proportional to the geometric mean of absorption and reduced scattering coefficients, can be estimated in a simpler fashion by multidistance light decay measurements. EAC mapping could be of interest for the scientific community because of its absolute information content, and because light propagation is governed by the EAC for source-detector distances exceeding 1 cm, which sense depths extending beyond the scalp and skull layers. Here, we report an EAC mapping procedure that can be applied to standard fNIRS recordings, yielding topographic maps with 2- to 3-cm resolution. Application to human data indicates the importance of venous sinuses in determining regional EAC variations, a factor often overlooked.

First Retrieval of Surface Lambert Albedos From Mars Reconnaissance Orbiter CRISM Data

NASA Astrophysics Data System (ADS)

McGuire, P. C.; Arvidson, R. E.; Murchie, S. L.; Wolff, M. J.; Smith, M. D.; Martin, T. Z.; Milliken, R. E.; Mustard, J. F.; Pelkey, S. M.; Lichtenberg, K. A.; Cavender, P. J.; Humm, D. C.; Titus, T. N.; Malaret, E. R.

2006-12-01

We have developed a pipeline-processing software system to convert radiance-on-sensor for each of 72 out of 544 CRISM spectral bands used in global mapping to the corresponding surface Lambert albedo, accounting for atmospheric, thermal, and photoclinometric effects. We will present and interpret first results from this software system for the retrieval of Lambert albedos from CRISM data. For the multispectral mapping modes, these pipeline-processed 72 spectral bands constitute all of the available bands, for wavelengths from 0.362-3.920 μm, at 100-200 m/pixel spatial resolution, and ~ 0.006\\spaceμm spectral resolution. For the hyperspectral targeted modes, these pipeline-processed 72 spectral bands are only a selection of all of the 544 spectral bands, but at a resolution of 15-38 m/pixel. The pipeline processing for both types of observing modes (multispectral and hyperspectral) will use climatology, based on data from MGS/TES, in order to estimate ice- and dust-aerosol optical depths, prior to the atmospheric correction with lookup tables based upon radiative-transport calculations via DISORT. There is one DISORT atmospheric-correction lookup table for converting radiance-on-sensor to Lambert albedo for each of the 72 spectral bands. The measurements of the Emission Phase Function (EPF) during targeting will not be employed in this pipeline processing system. We are developing a separate system for extracting more accurate aerosol optical depths and surface scattering properties. This separate system will use direct calls (instead of lookup tables) to the DISORT code for all 544 bands, and it will use the EPF data directly, bootstrapping from the climatology data for the aerosol optical depths. The pipeline processing will thermally correct the albedos for the spectral bands above ~ 2.6 μm, by a choice between 4 different techniques for determining surface temperature: 1) climatology, 2) empirical estimation of the albedo at 3.9 μm from the measured albedo at 2.5 μm, 3) a physical thermal model (PTM) based upon maps of thermal inertia from TES and coarse-resolution surface slopes (SS) from MOLA, and 4) a photoclinometric extension to the PTM that uses CRISM albedos at 0.41 μm to compute the SS at CRISM spatial resolution. For the thermal correction, we expect that each of these 4 different techniques will be valuable for some fraction of the observations.

Coordinated Airborne, Spaceborne, and Ground-Based Measurements of Massive, Thick Aerosol Layers During the Dry Season in Southern Africa

NASA Technical Reports Server (NTRS)

Schmid, B.; Redemann, J.; Russell, P. B.; Hobbs, P. V.; Hlavka, D. L.; McGill, M. J.; Holben, B. N.; Welton, E. J.; Campbell, J.; Torres, O.;

Nanoscale Characterization of Carrier Dynamic and Surface Passivation in InGaN/GaN Multiple Quantum Wells on GaN Nanorods.

PubMed

Chen, Weijian; Wen, Xiaoming; Latzel, Michael; Heilmann, Martin; Yang, Jianfeng; Dai, Xi; Huang, Shujuan; Shrestha, Santosh; Patterson, Robert; Christiansen, Silke; Conibeer, Gavin

2016-11-23

Using advanced two-photon excitation confocal microscopy, associated with time-resolved spectroscopy, we characterize InGaN/GaN multiple quantum wells on nanorod heterostructures and demonstrate the passivation effect of a KOH treatment. High-quality InGaN/GaN nanorods were fabricated using nanosphere lithography as a candidate material for light-emitting diode devices. The depth- and time-resolved characterization at the nanoscale provides detailed carrier dynamic analysis helpful for understanding the optical properties. The nanoscale spatially resolved images of InGaN quantum well and defects were acquired simultaneously. We demonstrate that nanorod etching improves light extraction efficiency, and a proper KOH treatment has been found to reduce the surface defects efficiently and enhance the luminescence. The optical characterization techniques provide depth-resolved and time-resolved carrier dynamics with nanoscale spatially resolved mapping, which is crucial for a comprehensive and thorough understanding of nanostructured materials and provides novel insight into the improvement of materials fabrication and applications.

Space Telescope and Optical Reverberation Mapping Project. VII. Understanding the Ultraviolet Anomaly in NGC 5548 with X-Ray Spectroscopy

NASA Astrophysics Data System (ADS)

Mathur, S.; Gupta, A.; Page, K.; Pogge, R. W.; Krongold, Y.; Goad, M. R.; Adams, S. M.; Anderson, M. D.; Arévalo, P.; Barth, A. J.; Bazhaw, C.; Beatty, T. G.; Bentz, M. C.; Bigley, A.; Bisogni, S.; Borman, G. A.; Boroson, T. A.; Bottorff, M. C.; Brandt, W. N.; Breeveld, A. A.; Brown, J. E.; Brown, J. S.; Cackett, E. M.; Canalizo, G.; Carini, M. T.; Clubb, K. I.; Comerford, J. M.; Coker, C. T.; Corsini, E. M.; Crenshaw, D. M.; Croft, S.; Croxall, K. V.; Dalla Bontà, E.; Deason, A. J.; Denney, K. D.; De Lorenzo-Cáceres, A.; De Rosa, G.; Dietrich, M.; Edelson, R.; Ely, J.; Eracleous, M.; Evans, P. A.; Fausnaugh, M. M.; Ferland, G. J.; Filippenko, A. V.; Flatland, K.; Fox, O. D.; Gates, E. L.; Gehrels, N.; Geier, S.; Gelbord, J. M.; Gorjian, V.; Greene, J. E.; Grier, C. J.; Grupe, D.; Hall, P. B.; Henderson, C. B.; Hicks, S.; Holmbeck, E.; Holoien, T. W.-S.; Horenstein, D.; Horne, Keith; Hutchison, T.; Im, M.; Jensen, J. J.; Johnson, C. A.; Joner, M. D.; Jones, J.; Kaastra, J.; Kaspi, S.; Kelly, B. C.; Kelly, P. L.; Kennea, J. A.; Kim, M.; Kim, S.; Kim, S. C.; King, A.; Klimanov, S. A.; Kochanek, C. S.; Korista, K. T.; Kriss, G. A.; Lau, M. W.; Lee, J. C.; Leonard, D. C.; Li, M.; Lira, P.; Ma, Z.; MacInnis, F.; Manne-Nicholas, E. R.; Malkan, M. A.; Mauerhan, J. C.; McGurk, R.; McHardy, I. M.; Montouri, C.; Morelli, L.; Mosquera, A.; Mudd, D.; Muller-Sanchez, F.; Musso, R.; Nazarov, S. V.; Netzer, H.; Nguyen, M. L.; Norris, R. P.; Nousek, J. A.; Ochner, P.; Okhmat, D. N.; Ou-Yang, B.; Pancoast, A.; Papadakis, I.; Parks, J. R.; Pei, L.; Peterson, B. M.; Pizzella, A.; Poleski, R.; Pott, J.-U.; Rafter, S. E.; Rix, H.-W.; Runnoe, J.; Saylor, D. A.; Schimoia, J. S.; Schnülle, K.; Sergeev, S. G.; Shappee, B. J.; Shivvers, I.; Siegel, M.; Simonian, G. V.; Siviero, A.; Skielboe, A.; Somers, G.; Spencer, M.; Starkey, D.; Stevens, D. J.; Sung, H.-I.; Tayar, J.; Tejos, N.; Turner, C. S.; Uttley, P.; Van Saders, J.; Vestergaard, M.; Vican, L.; Villanueva, S., Jr.; Villforth, C.; Weiss, Y.; Woo, J.-H.; Yan, H.; Young, S.; Yuk, H.; Zheng, W.; Zhu, W.; Zu, Y.

2017-09-01

During the Space Telescope and Optical Reverberation Mapping Project observations of NGC 5548, the continuum and emission-line variability became decorrelated during the second half of the six-month-long observing campaign. Here we present Swift and Chandra X-ray spectra of NGC 5548 obtained as part of the campaign. The Swift spectra show that excess flux (relative to a power-law continuum) in the soft X-ray band appears before the start of the anomalous emission-line behavior, peaks during the period of the anomaly, and then declines. This is a model-independent result suggesting that the soft excess is related to the anomaly. We divide the Swift data into on- and off-anomaly spectra to characterize the soft excess via spectral fitting. The cause of the spectral differences is likely due to a change in the intrinsic spectrum rather than to variable obscuration or partial covering. The Chandra spectra have lower signal-to-noise ratios, but are consistent with the Swift data. Our preferred model of the soft excess is emission from an optically thick, warm Comptonizing corona, the effective optical depth of which increases during the anomaly. This model simultaneously explains all three observations: the UV emission-line flux decrease, the soft-excess increase, and the emission-line anomaly.

Action recognition using multi-scale histograms of oriented gradients based depth motion trail Images

NASA Astrophysics Data System (ADS)

Wang, Guanxi; Tie, Yun; Qi, Lin

2017-07-01

In this paper, we propose a novel approach based on Depth Maps and compute Multi-Scale Histograms of Oriented Gradient (MSHOG) from sequences of depth maps to recognize actions. Each depth frame in a depth video sequence is projected onto three orthogonal Cartesian planes. Under each projection view, the absolute difference between two consecutive projected maps is accumulated through a depth video sequence to form a Depth Map, which is called Depth Motion Trail Images (DMTI). The MSHOG is then computed from the Depth Maps for the representation of an action. In addition, we apply L2-Regularized Collaborative Representation (L2-CRC) to classify actions. We evaluate the proposed approach on MSR Action3D dataset and MSRGesture3D dataset. Promising experimental result demonstrates the effectiveness of our proposed method.

High-speed polarization sensitive optical coherence tomography for retinal diagnostics

NASA Astrophysics Data System (ADS)

Yin, Biwei; Wang, Bingqing; Vemishetty, Kalyanramu; Nagle, Jim; Liu, Shuang; Wang, Tianyi; Rylander, Henry G., III; Milner, Thomas E.

2012-01-01

We report design and construction of an FPGA-based high-speed swept-source polarization-sensitive optical coherence tomography (SS-PS-OCT) system for clinical retinal imaging. Clinical application of the SS-PS-OCT system is accurate measurement and display of thickness, phase retardation and birefringence maps of the retinal nerve fiber layer (RNFL) in human subjects for early detection of glaucoma. The FPGA-based SS-PS-OCT system provides three incident polarization states on the eye and uses a bulk-optic polarization sensitive balanced detection module to record two orthogonal interference fringe signals. Interference fringe signals and relative phase retardation between two orthogonal polarization states are used to obtain Stokes vectors of light returning from each RNFL depth. We implement a Levenberg-Marquardt algorithm on a Field Programmable Gate Array (FPGA) to compute accurate phase retardation and birefringence maps. For each retinal scan, a three-state Levenberg-Marquardt nonlinear algorithm is applied to 360 clusters each consisting of 100 A-scans to determine accurate maps of phase retardation and birefringence in less than 1 second after patient measurement allowing real-time clinical imaging-a speedup of more than 300 times over previous implementations. We report application of the FPGA-based SS-PS-OCT system for real-time clinical imaging of patients enrolled in a clinical study at the Eye Institute of Austin and Duke Eye Center.

Optical properties of dust and the opacity of the Martian atmosphere

NASA Astrophysics Data System (ADS)

Korablev, O.; Moroz, V. I.; Petrova, E. V.; Rodin, A. V.

Particulate component of the Mars atmosphere composed by micron-sized products of soil weathering and water ice clouds strongly affects the current climate of the planet. In the absence of a dust storm so-called permanent dust haze with τ ≈ 0.2 in the atmosphere of Mars determines its thermal structure. Dust loading varies substantially with the season and geographic location, and only the data of mapping instruments are adequate to characterize it, such as TES/MGS and IRTM/Viking. In spite of vast domain of collected data, no model is now capable to explain all observed spectral features of dust aerosol. Several mineralogical and microphysical models of the atmospheric dust have been proposed but they cannot explain the pronounced systematic differences between the IR data (τ = 0.05-0.2) and measurements from the surface (Viking landers, Pathfinder) which give the typical “clear” optical depth of τ ≈ 0.5 from one side, and ground-based observations in the UV-visible range showing much more transparent atmosphere, on the other side. Also the relationship between τ9 and the visible optical depth is not well constrained experimentally so far. Future focused measurements are therefore necessary to study Martian aerosol.

Open questions on optical properties of dust and the opacity of the Martian atmosphere

NASA Astrophysics Data System (ADS)

Korablev, O.; Moroz, V.; Petrova, E.; Rodin, A.

Particulate component of the atmosphere composed by micron-sized products of soil weathering and water ice clouds that strongly affect the current climate of the planet. In the absence of a dust storm so-called permanent dust haze with0.2 in the atmosphere of Mars determines its thermal structure. Dust loading varies substantially with the season and geographic location, and only the data of mapping instruments are adequate to characterize it, such as TES/MGS and IRTM/Viking. In spite of vast domain of collected data, no model is now capable to explain all observed spectral features of dust aerosol. Several mineralogical and microphysical models of the atmospheric dust have been proposed but they cannot explain the pronounced systematic differences between the IR data and measurem ents from the surface (Viking landers, Pathfinder) which give in the quiet seasons the typical optical depth of? 0.5 from one side, and ground-based observations in the UV-visible range that frequently infer <0.2, on the other side. Also the relationship between9 and the visible optical depth is not well established experimentally so far. Future focused measurements are therefore necessary to study Martian aerosol.

Optical coherence tomography of dental structures

NASA Astrophysics Data System (ADS)

Baumgartner, Angela; Hitzenberger, Christoph K.; Dichtl, Sabine; Sattmann, Harald; Moritz, Andreas; Sperr, Wolfgang; Fercher, Adolf F.

1998-04-01

In the past ten years Partial Coherence Interferometry (PCI) and Optical Coherence Tomography (OCT) have been successfully developed for high precision biometry and tomography of biological tissues. OCT employs the partial coherence properties of a superluminescent diode and the Doppler principle yielding resolution and precision figures of the order of a few microns. Presently, the main application fields of this technique are biometry and imaging of ocular structures in vivo, as well as its clinical use in dermatology and endoscopic applications. This well established length measuring and imaging technique has now been applied to dentistry. First in vitro OCT images of the cemento (dentine) enamel junction of extracted sound and decayed human teeth have been recorded. These images distinguish dentine and enamel structures that are important for assessing enamel thickness and diagnosing caries. Individual optical A-Scans show that the penetration depth into enamel is considerably larger than into dentine. First polarization sensitive OCT recordings show localized changes of the polarization state of the light backscattered by dental material. Two-dimensional maps of the magnitude of the interference intensity and of the total phase difference between two orthogonal polarization states as a function of depth can reveal important structural information.

Direct Push Optical Screening Tool for High Resolution, Real-Time Mapping of Chlorinated Solvent DNAPL Architecture

DTIC Science & Technology

2016-07-01

petroleum hydrocarbon fuels due to higher densities, lower viscosities , and increased weathering (mass depletion) of residual chlorinated solvent DNAPL...generally classified as stratified layers of fine sand and silt with few clay layers. A silt layer was penetrated consistently at a depth of about 45...e.g., stiff clays ) there is potential for the thickness of the dye interaction zone to increase to approximately 1-2 mm. Intuition suggests that this

RGB-D depth-map restoration using smooth depth neighborhood supports

NASA Astrophysics Data System (ADS)

Liu, Wei; Xue, Haoyang; Yu, Zhongjie; Wu, Qiang; Yang, Jie

2015-05-01

A method to restore the depth map of an RGB-D image using smooth depth neighborhood (SDN) supports is presented. The SDN supports are computed based on the corresponding color image of the depth map. Compared with the most widely used square supports, the proposed SDN supports can well-capture the local structure of the object. Only pixels with similar depth values are allowed to be included in the support. We combine our SDN supports with the joint bilateral filter (JBF) to form the SDN-JBF and use it to restore depth maps. Experimental results show that our SDN-JBF can not only rectify the misaligned depth pixels but also preserve sharp depth discontinuities.

The Size of Dust and Smoke

NASA Technical Reports Server (NTRS)

2005-01-01

Desert dust particles tend to be larger in size than aerosols that originate from the processes of combustion. How precisely do the size of the aerosol particles comprising the dust that obscured the Red Sea on July 26, 2005, contrast with the size of the haze particles that obscured the United States eastern seaboard on the same day? NASA's Multi-angle Imaging SpectroRadiometer (MISR), which views Earth at nine different angles in four wavelengths, provides information about the amount, size, and shape of airborne particles. Here, MISR aerosol amount and size is presented for these two events. These MISR results distinguish desert dust, the most common non-spherical aerosol type, from pollution and forest fire particles. Determining aerosol characteristics is a key to understanding how aerosol particles influence the size, abundance, and rate of production of cloud droplets, and to a better understanding of how aerosols influence clouds and climate.

The left panel of each of these two image sets (Red Sea, left; U.S. coastline, right) is a natural-color view from MISR's 70-degree forward viewing camera. The color-coded maps in the central panels show aerosol optical depth; the right panels provide a measure of aerosol size, expressed as the 'Angstrom exponent.' For the optical depth maps, yellow pixels indicate the most optically-thick aerosols, whereas the red, green and blue pixels represent progressively decreasing aerosol amounts. For this dramatic dust storm over the Red Sea, the aerosol is quite thick, and in some places, the dust over water is too optically thick for MISR to retrieve the aerosol amount. For the eastern seaboard haze, the thickest aerosols have accumulated over the Atlantic Ocean off the coasts of South Carolina and Georgia. Cases where no successful retrieval occurred, either due to extremely high aerosol optical thickness or to clouds, appear as dark gray pixels.

For the Angstrom exponent maps, the blue and green pixels (smaller values) correspond with more large particles, whilst the yellow and red pixels, representing higher Angstrom exponents, correspond with more small particles. Angstrom exponent is related to the way the aerosol optical depth (AOD) changes with wavelength -- a more steeply decreasing AOD with wavelength indicates smaller particles. The greater the magnitude of the Angstrom exponent, the greater the contribution of smaller particles to the overall particle distribution. For optically thick desert dust storms, as in this case, the Angstrom exponent is expected to be relatively low -- likely below 1. For the eastern seaboard haze, the Angstrom exponent is significantly higher, indicating the relative abundance of small pollution particles, especially over the Atlantic where the aerosol optical depth is also very high.

With a nearly simultaneous data acquisition time, the MODIS instrument also collected data for these events, and image features for both the dust storm and the haze are available.

The Multi-angle Imaging SpectroRadiometer observes the daylit Earth continuously, viewing the entire globe between 82 north and 82 south latitude every nine days. This image covers an area of about 1,265 kilometers by 400 kilometers. These data products were generated from a portion of the imagery acquired during Terra orbits 29809 and 29814 and utilize data from blocks 60 to 67 and 71 to 78 within World Reference System-2 paths 17 and 170, respectively.

MISR was built and is managed by NASA's Jet Propulsion Laboratory, Pasadena, CA, for NASA's Science Mission Directorate, Washington, DC. The Terra satellite is managed by NASA's Goddard Space Flight Center, Greenbelt, MD. JPL is managed for NASA by the California Institute of Technology.

Graphene-based ultrasonic detector for photoacoustic imaging

NASA Astrophysics Data System (ADS)

Yang, Fan; Song, Wei; Zhang, Chonglei; Fang, Hui; Min, Changjun; Yuan, Xiaocong

2018-03-01

Taking advantage of optical absorption imaging contrast, photoacoustic imaging technology is able to map the volumetric distribution of the optical absorption properties within biological tissues. Unfortunately, traditional piezoceramics-based transducers used in most photoacoustic imaging setups have inadequate frequency response, resulting in both poor depth resolution and inaccurate quantification of the optical absorption information. Instead of the piezoelectric ultrasonic transducer, we develop a graphene-based optical sensor for detecting photoacoustic pressure. The refractive index in the coupling medium is modulated due to photoacoustic pressure perturbation, which creates the variation of the polarization-sensitive optical absorption property of the graphene. As a result, the photoacoustic detection is realized through recording the reflectance intensity difference of polarization light. The graphene-based detector process an estimated noise-equivalentpressure (NEP) sensitivity of 550 Pa over 20-MHz bandwidth with a nearby linear pressure response from 11.0 kPa to 53.0 kPa. Further, a graphene-based photoacoustic microscopy is built, and non-invasively reveals the microvascular anatomy in mouse ears label-freely.

Probing myocardium biomechanics using quantitative optical coherence elastography

NASA Astrophysics Data System (ADS)

Wang, Shang; Lopez, Andrew L.; Morikawa, Yuka; Tao, Ge; Li, Jiasong; Larina, Irina V.; Martin, James F.; Larin, Kirill V.

2015-03-01

We present a quantitative optical coherence elastographic method for noncontact assessment of the myocardium elasticity. The method is based on shear wave imaging optical coherence tomography (SWI-OCT), where a focused air-puff system is used to induce localized tissue deformation through a low-pressure short-duration air stream and a phase-sensitive OCT system is utilized to monitor the propagation of the induced tissue displacement with nanoscale sensitivity. The 1-D scanning of M-mode OCT imaging and the application of optical phase retrieval and mapping techniques enable the reconstruction and visualization of 2-D depth-resolved shear wave propagation in tissue with ultra-high frame rate. The feasibility of this method in quantitative elasticity measurement is demonstrated on tissue-mimicking phantoms with the estimated Young's modulus compared with uniaxial compression tests. We also performed pilot experiments on ex vivo mouse cardiac muscle tissues with normal and genetically altered cardiomyocytes. Our results indicate this noncontact quantitative optical coherence elastographic method can be a useful tool for the cardiac muscle research and studies.

Wide-field absolute transverse blood flow velocity mapping in vessel centerline

NASA Astrophysics Data System (ADS)

Wu, Nanshou; Wang, Lei; Zhu, Bifeng; Guan, Caizhong; Wang, Mingyi; Han, Dingan; Tan, Haishu; Zeng, Yaguang

2018-02-01

We propose a wide-field absolute transverse blood flow velocity measurement method in vessel centerline based on absorption intensity fluctuation modulation effect. The difference between the light absorption capacities of red blood cells and background tissue under low-coherence illumination is utilized to realize the instantaneous and average wide-field optical angiography images. The absolute fuzzy connection algorithm is used for vessel centerline extraction from the average wide-field optical angiography. The absolute transverse velocity in the vessel centerline is then measured by a cross-correlation analysis according to instantaneous modulation depth signal. The proposed method promises to contribute to the treatment of diseases, such as those related to anemia or thrombosis.

SPED light sheet microscopy: fast mapping of biological system structure and function

PubMed Central

Tomer, Raju; Lovett-Barron, Matthew; Kauvar, Isaac; Andalman, Aaron; Burns, Vanessa M.; Sankaran, Sethuraman; Grosenick, Logan; Broxton, Michael; Yang, Samuel; Deisseroth, Karl

2016-01-01

The goal of understanding living nervous systems has driven interest in high-speed and large field-of-view volumetric imaging at cellular resolution. Light-sheet microscopy approaches have emerged for cellular-resolution functional brain imaging in small organisms such as larval zebrafish, but remain fundamentally limited in speed. Here we have developed SPED light sheet microscopy, which combines large volumetric field-of-view via an extended depth of field with the optical sectioning of light sheet microscopy, thereby eliminating the need to physically scan detection objectives for volumetric imaging. SPED enables scanning of thousands of volumes-per-second, limited only by camera acquisition rate, through the harnessing of optical mechanisms that normally result in unwanted spherical aberrations. We demonstrate capabilities of SPED microscopy by performing fast sub-cellular resolution imaging of CLARITY mouse brains and cellular-resolution volumetric Ca2+ imaging of entire zebrafish nervous systems. Together, SPED light sheet methods enable high-speed cellular-resolution volumetric mapping of biological system structure and function. PMID:26687363

Smoke optical depths - Magnitude, variability, and wavelength dependence

NASA Technical Reports Server (NTRS)

Pueschel, R. F.; Russell, P. B.; Colburn, D. A.; Ackerman, T. P.; Allen, D. A.

1988-01-01

An airborne autotracking sun-photometer has been used to measure magnitudes, temporal/spatial variabilities, and the wavelength dependence of optical depths in the near-ultraviolet to near-infrared spectrum of smoke from two forest fires and one jet fuel fire and of background air. Jet fuel smoke optical depths were found to be generally less wavelength dependent than background aerosol optical depths. Forest fire smoke optical depths, however, showed a wide range of wavelength depedences, such as incidents of wavelength-independent extinction.

Ubiquitous Creation of Bas-Relief Surfaces with Depth-of-Field Effects Using Smartphones.

PubMed

Sohn, Bong-Soo

2017-03-11

This paper describes a new method to automatically generate digital bas-reliefs with depth-of-field effects from general scenes. Most previous methods for bas-relief generation take input in the form of 3D models. However, obtaining 3D models of real scenes or objects is often difficult, inaccurate, and time-consuming. From this motivation, we developed a method that takes as input a set of photographs that can be quickly and ubiquitously captured by ordinary smartphone cameras. A depth map is computed from the input photographs. The value range of the depth map is compressed and used as a base map representing the overall shape of the bas-relief. However, the resulting base map contains little information on details of the scene. Thus, we construct a detail map using pixel values of the input image to express the details. The base and detail maps are blended to generate a new depth map that reflects both overall depth and scene detail information. This map is selectively blurred to simulate the depth-of-field effects. The final depth map is converted to a bas-relief surface mesh. Experimental results show that our method generates a realistic bas-relief surface of general scenes with no expensive manual processing.

Ubiquitous Creation of Bas-Relief Surfaces with Depth-of-Field Effects Using Smartphones

PubMed Central

Sohn, Bong-Soo

2017-01-01

This paper describes a new method to automatically generate digital bas-reliefs with depth-of-field effects from general scenes. Most previous methods for bas-relief generation take input in the form of 3D models. However, obtaining 3D models of real scenes or objects is often difficult, inaccurate, and time-consuming. From this motivation, we developed a method that takes as input a set of photographs that can be quickly and ubiquitously captured by ordinary smartphone cameras. A depth map is computed from the input photographs. The value range of the depth map is compressed and used as a base map representing the overall shape of the bas-relief. However, the resulting base map contains little information on details of the scene. Thus, we construct a detail map using pixel values of the input image to express the details. The base and detail maps are blended to generate a new depth map that reflects both overall depth and scene detail information. This map is selectively blurred to simulate the depth-of-field effects. The final depth map is converted to a bas-relief surface mesh. Experimental results show that our method generates a realistic bas-relief surface of general scenes with no expensive manual processing. PMID:28287487

Structured polarized light microscopy (SPLM) for mapping collagen fiber orientation of ocular tissues

NASA Astrophysics Data System (ADS)

Yang, Bin; Brazile, Bryn; Jan, Ning-Jiun; Voorhees, Andrew P.; Sigal, Ian A.

2018-02-01

Glaucoma is a disease characterized by progressive and irreversible vision loss leading to blindness. This vision loss is believed to be largely determined by the biomechanics of the optic nerve head region. Optic nerve head biomechanics, in turn, is determined by the properties of the constituent collagen. However, it is challenging to visualize and quantify collagen morphology and orientation in situ, and therefore often studies of the region collagen have used histological sections. Here we describe SPLM, a novel imaging technique that combines structured light illumination and polarized light microscopy (PLM) to enable collagen fiber visualization and fiber orientation mapping without requiring tissue sectioning. We developed a custom automated SPLM imaging system based on an upright microscope and a digital micromirror device (DMD) projector. The high spatial frequency patterns were used to achieve effective background suppression. Enhanced scattering sensitivity with SPLM resulted in images with highly improved visibility of collagen structures, even of tissues covered by pigment. SPLM produced improved fiber orientation maps from superficial layers compared to depth-averaged orientation from regular PLM. SPLM imaging provides valuable information of collagen fiber morphology and orientation in situ thus strengthening the study of ocular collagen fiber biomechanics and glaucoma.

In vivo layer visualization of rat olfactory bulb by a swept source optical coherence tomography and its confirmation through electrocoagulation and anatomy

PubMed Central

Watanabe, Hideyuki; Rajagopalan, Uma Maheswari; Nakamichi, Yu; Igarashi, Kei M.; Madjarova, Violeta Dimitrova; Kadono, Hirofumi; Tanifuji, Manabu

2011-01-01

Here, we report in vivo 3-D visualization of the layered organization of a rat olfactory bulb (OB) by a swept source optical coherence tomography (SS-OCT). The SS-OCT operates at a wavelength of 1334 nm with respective theoretical depth and lateral resolutions of 6.7 μm and 15.4 μm in air and hence it is possible to get a 3D structural map of OB in vivo at the micron level resolution with millimeter-scale imaging depth. Up until now, with methods such as MRI, confocal microscopy, OB depth structure in vivo had not been clearly visualized as these do not satisfy the criterion of simultaneously providing micron-scale spatial resolution and imaging up to a few millimeter in depth. In order to confirm the OB’s layered organization revealed by SS-OCT, we introduced the technique of electrocoagulation to make landmarks across the layered structure. To our knowledge this is such a first study that combines electrocoagulation and OCT in vivo of rat OB. Our results confirmed the layered organization of OB, and moreover the layers were clearly identified by electrocoagulation landmarks both in the OCT structural and anatomical slice images. We expect such a combined study is beneficial for both OCT and neuroscience fields. PMID:21833364

Optical design and stray light analysis for the JANUS camera of the JUICE space mission

NASA Astrophysics Data System (ADS)

Greggio, D.; Magrin, D.; Munari, M.; Zusi, M.; Ragazzoni, R.; Cremonese, G.; Debei, S.; Friso, E.; Della Corte, V.; Palumbo, P.; Hoffmann, H.; Jaumann, R.; Michaelis, H.; Schmitz, N.; Schipani, P.; Lara, L. M.

2015-09-01

The JUICE (JUpiter ICy moons Explorer) satellite of the European Space Agency (ESA) is dedicated to the detailed study of Jupiter and its moons. Among the whole instrument suite, JANUS (Jovis, Amorum ac Natorum Undique Scrutator) is the camera system of JUICE designed for imaging at visible wavelengths. It will conduct an in-depth study of Ganymede, Callisto and Europa, and explore most of the Jovian system and Jupiter itself, performing, in the case of Ganymede, a global mapping of the satellite with a resolution of 400 m/px. The optical design chosen to meet the scientific goals of JANUS is a three mirror anastigmatic system in an off-axis configuration. To ensure that the achieved contrast is high enough to observe the features on the surface of the satellites, we also performed a preliminary stray light analysis of the telescope. We provide here a short description of the optical design and we present the procedure adopted to evaluate the stray-light expected during the mapping phase of the surface of Ganymede. We also use the results obtained from the first run of simulations to optimize the baffle design.

Foreground contribution to the inferred cosmological parameters from Planck

NASA Astrophysics Data System (ADS)

Vincent, Aaron C.; Wibig, Tadeusz; Wolfendale, Arnold W.

Previous analyses of cosmic microwave background (CMB) measurements [T. Wibig and A. W. Wolfendale, Mon. Not. R. Astron. Soc. 360 (2005) 236, arXiv:astro-ph/0409397; Mon. Not. R. Astron. Soc. 448 (2015) 1030, arXiv:1507.0677.] have revealed contamination by areas of high cosmic ray activity in the Milky Way. Here, we update studies, looking at the most recent Planck release of residual maps. We search for possible effects of foreground contamination in the reconstruction of the ΛCDM cosmological parameters. We focus on the Hubble parameter H0 and the optical depth to reionization τ, both of which exhibit discrepancies between CMB-inferred values and low-redshift measurements (“the delta H0 problem”). Using the publicly available “component separated” Planck temperature maps, we single out three distinct regions: the “loops”, “chimneys” and “low CR” regions, which disproportionately contributed to CR contamination of WMAP data. We find that two of the four maps are strongly affected by removal of anomalously high or low CR activity regions. However, the Commander method, used to produce the angular power spectrum at low ( < 30) multipoles in cosmological analyses, appears robust under these changes. Finally, we use the inferred Hubble parameter H0 as a proxy to look for general directional dependence of the CMB power spectrum, finding a small but robust dependence on the Galactic longitude. Although there is some evidence for a continuing CR contamination, it is insufficient to provide an answer to the delta H0 problem, or to the optical depth problem, though dependence of the derived H0 on direction seems significant. The geometrical pattern — striations along constant longitudes — suggests CR contamination as distinct from a truly cosmological effect.

Exploring the inner parsecs of active galactic nuclei using near-infrared high resolution polarimetric simulations with MontAGN

NASA Astrophysics Data System (ADS)

Grosset, L.; Rouan, D.; Gratadour, D.; Pelat, D.; Orkisz, J.; Marin, F.; Goosmann, R.

2018-04-01

Aims: In this paper we aim to constrain the properties of dust structures in the central first parsecs of active galactic nuclei (AGN). Our goal is to study the required optical depth and composition of different dusty and ionised structures. Methods: We developed a radiative transfer code called Monte Carlo for Active Galactic Nuclei (MontAGN), which is optimised for polarimetric observations in the infrared. With both this code and STOKES, designed to be relevant from the hard X-ray band to near-infrared wavelengths, we investigate the polarisation emerging from a characteristic model of the AGN environment. For this purpose, we compare predictions of our models with previous infrared observations of NGC 1068, and try to reproduce several key polarisation patterns revealed by polarisation mapping. Results: We constrain the required dust structures and their densities. More precisely, we find that the electron density inside the ionisation cone is about 2.0 × 109 m-3. With structures constituted of spherical grains of constant density, we also highlight that the torus should be thicker than 20 in term of K-band optical depth to block direct light from the centre. It should also have a stratification in density: a less dense outer rim with an optical depth at 2.2 μm typically between 0.8 and 4 for observing the double scattering effect previously proposed. Conclusions: We bring constraints on the dust structures in the inner parsecs of an AGN model supposed to describe NGC 1068. When compared to observations, this leads to an optical depth of at least 20 in the Ks band for the torus of NGC 1068, corresponding to τV ≈ 170, which is within the range of current estimation based on observations. In the future, we will improve our study by including non-uniform dust structures and aligned elongated grains to constrain other possible interpretations of the observations.

The design and implementation of postprocessing for depth map on real-time extraction system.

PubMed

Tang, Zhiwei; Li, Bin; Li, Huosheng; Xu, Zheng

2014-01-01

Depth estimation becomes the key technology to resolve the communications of the stereo vision. We can get the real-time depth map based on hardware, which cannot implement complicated algorithm as software, because there are some restrictions in the hardware structure. Eventually, some wrong stereo matching will inevitably exist in the process of depth estimation by hardware, such as FPGA. In order to solve the problem a postprocessing function is designed in this paper. After matching cost unique test, the both left-right and right-left consistency check solutions are implemented, respectively; then, the cavities in depth maps can be filled by right depth values on the basis of right-left consistency check solution. The results in the experiments have shown that the depth map extraction and postprocessing function can be implemented in real time in the same system; what is more, the quality of the depth maps is satisfactory.

Improved evaluation of optical depth components from Langley plot data

NASA Technical Reports Server (NTRS)

Biggar, S. F.; Gellman, D. I.; Slater, P. N.

1990-01-01

A simple, iterative procedure to determine the optical depth components of the extinction optical depth measured by a solar radiometer is presented. Simulated data show that the iterative procedure improves the determination of the exponent of a Junge law particle size distribution. The determination of the optical depth due to aerosol scattering is improved as compared to a method which uses only two points from the extinction data. The iterative method was used to determine spectral optical depth components for June 11-13, 1988 during the MAC III experiment.

Atmospheric imaging results from the Mars exploration rovers: Spirit and Opportunity.

PubMed

Lemmon, M T; Wolff, M J; Smith, M D; Clancy, R T; Banfield, D; Landis, G A; Ghosh, A; Smith, P H; Spanovich, N; Whitney, B; Whelley, P; Greeley, R; Thompson, S; Bell, J F; Squyres, S W

2004-12-03

A visible atmospheric optical depth of 0.9 was measured by the Spirit rover at Gusev crater and by the Opportunity rover at Meridiani Planum. Optical depth decreased by about 0.6 to 0.7% per sol through both 90-sol primary missions. The vertical distribution of atmospheric dust at Gusev crater was consistent with uniform mixing, with a measured scale height of 11.56 +/- 0.62 kilometers. The dust's cross section weighted mean radius was 1.47 +/- 0.21 micrometers (mm) at Gusev and 1.52 +/- 0.18 mm at Meridiani. Comparison of visible optical depths with 9-mm optical depths shows a visible-to-infrared optical depth ratio of 2.0 +/- 0.2 for comparison with previous monitoring of infrared optical depths.

Strategies to Improve the Accuracy of Mars-GRAM Sensitivity Studies at Large Optical Depths

NASA Technical Reports Server (NTRS)

Justh, Hilary L.; Justus, Carl G.; Badger, Andrew M.

2009-01-01

The Mars Global Reference Atmospheric Model (Mars-GRAM) is an engineering-level atmospheric model widely used for diverse mission applications. Mars-GRAM s perturbation modeling capability is commonly used, in a Monte-Carlo mode, to perform high fidelity engineering end-to-end simulations for entry, descent, and landing (EDL). It has been discovered during the Mars Science Laboratory (MSL) site selection process that Mars-GRAM when used for sensitivity studies for MapYear=0 and large optical depth values such as tau=3 is less than realistic. A comparison study between Mars atmospheric density estimates from Mars- GRAM and measurements by Mars Global Surveyor (MGS) has been undertaken for locations of varying latitudes, Ls, and LTST on Mars. The preliminary results from this study have validated the Thermal Emission Spectrometer (TES) limb data. From the surface to 80 km altitude, Mars- GRAM is based on the NASA Ames Mars General Circulation Model (MGCM). MGCM results that were used for Mars-GRAM with MapYear=0 were from a MGCM run with a fixed value of tau=3 for the entire year at all locations. Unrealistic energy absorption by uniform atmospheric dust leads to an unrealistic thermal energy balance on the polar caps. The outcome is an inaccurate cycle of condensation/sublimation of the polar caps and, as a consequence, an inaccurate cycle of total atmospheric mass and global-average surface pressure. Under an assumption of unchanged temperature profile and hydrostatic equilibrium, a given percentage change in surface pressure would produce a corresponding percentage change in density at all altitudes. Consequently, the final result of a change in surface pressure is an imprecise atmospheric density at all altitudes. To solve this pressure-density problem, a density factor value was determined for tau=.3, 1 and 3 that will adjust the input values of MGCM MapYear 0 pressure and density to achieve a better match of Mars-GRAM MapYear=0 with MapYears 1 and 2 MGCM output at comparable dust loading. Currently, these density factors are fixed values for all latitudes and Ls. Results will be presented of the work underway to derive better multipliers by including possible variation with latitude and/or Ls. This is achieved by comparison of Mars-GRAM MapYear=0 output with TES limb data. The addition of these density factors to Mars-GRAM will improve the results of the sensitivity studies done for large optical depths. Answers may also be provided to the issues raised in a recent study by Desai(2008). Desai has shown that the actual landing sites of Mars Pathfinder, the Mars Exploration Rovers and the Phoenix Mars Lander have been further downrange than predicted by models prior to landing. Desai s reconstruction of their entries into the Martian atmosphere showed that the models consistently predicted higher densities than those found upon EDL. The solution of this problem would be important to the Mars Program since future exploration of Mars by landers and rovers will require more accurate landing capabilities, especially for the proposed Mars Sample Return mission.

Aerosol-cloud interaction determined by satellite data over the Baltic Sea countries

NASA Astrophysics Data System (ADS)

Saponaro, Giulia; Kolmonen, Pekka; Sogacheva, Larisa; de Leeuw, Gerrit

2015-04-01

The present study investigates the use of long-term satellite data to assess the influence of aerosols upon cloud parameters over the Baltic Sea region. This particular area offers the contrast of a very clean environment (Fennoscandia) against a more polluted one (Germany, Poland). The datasets consists of Collection 6 Level 3 daily observations from 2002 to 2014 collected by the NASA's Moderate-Resolution Imaging Spectrometer (MODIS) instrument on-board the Aqua platform. The MODIS aerosol optical depth (AOD) product is used as a proxy for the number concentration of aerosol particles while the cloud effective radius (CER) and cloud optical thickness (COT) describe cloud microphysical and optical properties respectively. Satellite data have certain limitations, such as the restriction to summer season due to solar zenith angle restrictions and the known problem of the ambiguity of the aerosol-cloud interface, for instance. Through the analysis of a 12-years dataset, distribution maps provide information on a regional scale about the first aerosol indirect effect (AIE) by determining the aerosol-cloud interaction (ACI). The ACI is defined as the change in cloud optical depth or effective radius as a function of aerosol load for a fixed liquid water path (LWP). The focusing point of the current study is the evaluation of regional trends of ACI over the observed area of the Baltic Sea.

The Particle Size Distribution in Saturn’s C Ring from UVIS and VIMS Stellar Occultations and RSS Radio Occultations

NASA Astrophysics Data System (ADS)

Jerousek, Richard Gregory; Colwell, Josh; Hedman, Matthew M.; French, Richard G.; Marouf, Essam A.; Esposito, Larry; Nicholson, Philip D.

2017-10-01

The Cassini Ultraviolet Imaging Spectrograph (UVIS) and Visual and Infrared Mapping Spectrometer (VIMS) have measured ring optical depths over a wide range of viewing geometries at effective wavelengths of 0.15 μm and 2.9 μm respectively. Using Voyager S and X band radio occultations and the direct inversion of the forward scattered S band signal, Marouf et al. (1982), (1983), and Zebker et al. (1985) determined the power-law size distribution parameters assuming a minimum particle radius of 1 mm. Many further studies have also constrained aspects of the particle size distribution throughout the main rings. Marouf et al. (2008a) determined the smallest ring particles to have radii of 4-5 mm using Cassini RSS data. Harbison et al. (2013) used VIMS solar occultations and also found minimum particle sizes of 4-5 mm in the C ring with q ~ 3.1, where n(a)da=Ca^(-q)da is the assumed differential power-law size distribution for particles of radius a. Recent studies of excess variance in stellar signal by Colwell et al. (2017, submitted) constrain the cross-section-weighted effective particle radius to 1 m to several meters. Using the wide range of viewing geometries available to VIMS and UVIS stellar occultations we find that normal optical depth does not strongly depend on viewing geometry at 10km resolution (which would be the case if self-gravity wakes were present). Throughout the C ring, we fit power-law derived optical depths to those measured by UVIS, VIMS, and by the Cassini Radio Science Subsystem (RSS) at 0.94 and 3.6 cm wavelengths to constrain the four parameters of the size distribution at 10km radial resolution. We find significant amounts of particle size sorting throughout the region with a positive correlation between maximum particles size (amax) and normal optical depth with a mean value of amax ~ 3 m in the background C ring. This correlation is negative in the C ring plateaus. We find an inverse correlation in minimum particle radius with normal optical depth and a mean value of amin ~ 4 mm in the background C ring with slightly larger smallest particles in the C ring plateaus.

Retrieval, Inter-Comparison, and Validation of Above-Cloud Aerosol Optical Depth from A-train Sensors

NASA Technical Reports Server (NTRS)

Jethva, Hiren; Torres, Omar; Bhartia, Pawan K.; Remer, Lorraine; Redemann, Jens; Dunagan, Stephen E.; Livingston, John; Shinozuka, Yohei; Kacenelenbogen, Meloe; Segal-Rosenbeimer, Michal;

Optical Manipulation along Optical Axis with Polarization Sensitive Meta-lens.

PubMed

Markovich, Hen; Shishkin, Ivan; Hendler, Netta; Ginzburg, Pavel

2018-06-27

The ability to manipulate small objects with focused laser beams opens a broad spectrum of opportunities in fundamental and applied studies, where a precise control over mechanical path and stability is required. While conventional optical tweezers are based on bulky diffractive optical elements, developing compact integrable within a fluid cell trapping devices is highly demanded. Here, plasmonic polarization sensitive metasurface-based lens, embedded within a fluid, is demonstrated to provide several stable trapping centers along the optical axis. The position of a particle is controlled with the polarization of the incident light, interacting with plasmonic nanoscale patch antennas, organized within overlapping Fresnel zones of the lens. While standard diffractive optical elements face challenges to trap objects in lateral direction outside the depth of focus, bi-focal Fresnel meta-lens demonstrates the capability to manipulate a bead along 4 micrometers line. Additional fluorescent module, incorporated within the optical trapping setup, was implemented and enabled accurate mapping of optical potential via a particle tracking algorithm. Auxiliary micro- and nano- structures, integrated within fluidic devices, provide numerous opportunities to achieve flexible optomechanical manipulation, including, transport, trapping and sorting, which are highly demanded in lab-on-a-chip applications and many others.

Optimal design and critical analysis of a high resolution video plenoptic demonstrator

NASA Astrophysics Data System (ADS)

Drazic, Valter; Sacré, Jean-Jacques; Bertrand, Jérôme; Schubert, Arno; Blondé, Etienne

2011-03-01

A plenoptic camera is a natural multi-view acquisition device also capable of measuring distances by correlating a set of images acquired under different parallaxes. Its single lens and single sensor architecture have two downsides: limited resolution and depth sensitivity. In a very first step and in order to circumvent those shortcomings, we have investigated how the basic design parameters of a plenoptic camera optimize both the resolution of each view and also its depth measuring capability. In a second step, we built a prototype based on a very high resolution Red One® movie camera with an external plenoptic adapter and a relay lens. The prototype delivered 5 video views of 820x410. The main limitation in our prototype is view cross talk due to optical aberrations which reduce the depth accuracy performance. We have simulated some limiting optical aberrations and predicted its impact on the performances of the camera. In addition, we developed adjustment protocols based on a simple pattern and analyzing programs which investigate the view mapping and amount of parallax crosstalk on the sensor on a pixel basis. The results of these developments enabled us to adjust the lenslet array with a sub micrometer precision and to mark the pixels of the sensor where the views do not register properly.

Optimal design and critical analysis of a high-resolution video plenoptic demonstrator

NASA Astrophysics Data System (ADS)

Drazic, Valter; Sacré, Jean-Jacques; Schubert, Arno; Bertrand, Jérôme; Blondé, Etienne

2012-01-01

A plenoptic camera is a natural multiview acquisition device also capable of measuring distances by correlating a set of images acquired under different parallaxes. Its single lens and single sensor architecture have two downsides: limited resolution and limited depth sensitivity. As a first step and in order to circumvent those shortcomings, we investigated how the basic design parameters of a plenoptic camera optimize both the resolution of each view and its depth-measuring capability. In a second step, we built a prototype based on a very high resolution Red One® movie camera with an external plenoptic adapter and a relay lens. The prototype delivered five video views of 820 × 410. The main limitation in our prototype is view crosstalk due to optical aberrations that reduce the depth accuracy performance. We simulated some limiting optical aberrations and predicted their impact on the performance of the camera. In addition, we developed adjustment protocols based on a simple pattern and analysis of programs that investigated the view mapping and amount of parallax crosstalk on the sensor on a pixel basis. The results of these developments enabled us to adjust the lenslet array with a submicrometer precision and to mark the pixels of the sensor where the views do not register properly.

Space Telescope and Optical Reverberation Mapping Project. VII. Understanding the Ultraviolet Anomaly in NGC 5548 with X-Ray Spectroscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mathur, S.; Gupta, A.; Page, K.

During the Space Telescope and Optical Reverberation Mapping Project observations of NGC 5548, the continuum and emission-line variability became decorrelated during the second half of the six-month-long observing campaign. Here we present Swift and Chandra X-ray spectra of NGC 5548 obtained as part of the campaign. The Swift spectra show that excess flux (relative to a power-law continuum) in the soft X-ray band appears before the start of the anomalous emission-line behavior, peaks during the period of the anomaly, and then declines. This is a model-independent result suggesting that the soft excess is related to the anomaly. We divide themore » Swift data into on- and off-anomaly spectra to characterize the soft excess via spectral fitting. The cause of the spectral differences is likely due to a change in the intrinsic spectrum rather than to variable obscuration or partial covering. The Chandra spectra have lower signal-to-noise ratios, but are consistent with the Swift data. Our preferred model of the soft excess is emission from an optically thick, warm Comptonizing corona, the effective optical depth of which increases during the anomaly. In conclusion, this model simultaneously explains all three observations: the UV emission-line flux decrease, the soft-excess increase, and the emission-line anomaly.« less

Space Telescope and Optical Reverberation Mapping Project. VII. Understanding the Ultraviolet Anomaly in NGC 5548 with X-Ray Spectroscopy

DOE PAGES

Mathur, S.; Gupta, A.; Page, K.; ...

2017-08-31

During the Space Telescope and Optical Reverberation Mapping Project observations of NGC 5548, the continuum and emission-line variability became decorrelated during the second half of the six-month-long observing campaign. Here we present Swift and Chandra X-ray spectra of NGC 5548 obtained as part of the campaign. The Swift spectra show that excess flux (relative to a power-law continuum) in the soft X-ray band appears before the start of the anomalous emission-line behavior, peaks during the period of the anomaly, and then declines. This is a model-independent result suggesting that the soft excess is related to the anomaly. We divide themore » Swift data into on- and off-anomaly spectra to characterize the soft excess via spectral fitting. The cause of the spectral differences is likely due to a change in the intrinsic spectrum rather than to variable obscuration or partial covering. The Chandra spectra have lower signal-to-noise ratios, but are consistent with the Swift data. Our preferred model of the soft excess is emission from an optically thick, warm Comptonizing corona, the effective optical depth of which increases during the anomaly. In conclusion, this model simultaneously explains all three observations: the UV emission-line flux decrease, the soft-excess increase, and the emission-line anomaly.« less

Space Telescope and Optical Reverberation Mapping Project. VII. Understanding the Ultraviolet Anomaly in NGC 5548 with X-Ray Spectroscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mathur, S.; Pogge, R. W.; Adams, S. M.

During the Space Telescope and Optical Reverberation Mapping Project observations of NGC 5548, the continuum and emission-line variability became decorrelated during the second half of the six-month-long observing campaign. Here we present Swift and Chandra X-ray spectra of NGC 5548 obtained as part of the campaign. The Swift spectra show that excess flux (relative to a power-law continuum) in the soft X-ray band appears before the start of the anomalous emission-line behavior, peaks during the period of the anomaly, and then declines. This is a model-independent result suggesting that the soft excess is related to the anomaly. We divide themore » Swift data into on- and off-anomaly spectra to characterize the soft excess via spectral fitting. The cause of the spectral differences is likely due to a change in the intrinsic spectrum rather than to variable obscuration or partial covering. The Chandra spectra have lower signal-to-noise ratios, but are consistent with the Swift data. Our preferred model of the soft excess is emission from an optically thick, warm Comptonizing corona, the effective optical depth of which increases during the anomaly. This model simultaneously explains all three observations: the UV emission-line flux decrease, the soft-excess increase, and the emission-line anomaly.« less

Near-Infrared Imaging for Spatial Mapping of Organic Content in Petroleum Source Rocks

NASA Astrophysics Data System (ADS)

Mehmani, Y.; Burnham, A. K.; Vanden Berg, M. D.; Tchelepi, H.

2017-12-01

Natural gas from unconventional petroleum source rocks (shales) plays a key role in our transition towards sustainable low-carbon energy production. The potential for carbon storage (in adsorbed state) in these formations further aligns with efforts to mitigate climate change. Optimizing production and development from these resources requires knowledge of the hydro-thermo-mechanical properties of the rock, which are often strong functions of organic content. This work demonstrates the potential of near-infrared (NIR) spectral imaging in mapping the spatial distribution of organic content with O(100µm) resolution on cores that can span several hundred feet in depth (Mehmani et al., 2017). We validate our approach for the immature oil shale of the Green River Formation (GRF), USA, and show its applicability potential in other formations. The method is a generalization of a previously developed optical approach specialized to the GRF (Mehmani et al., 2016a). The implications of this work for spatial mapping of hydro-thermo-mechanical properties of excavated cores, in particular thermal conductivity, are discussed (Mehmani et al., 2016b). References:Mehmani, Y., A.K. Burnham, M.D. Vanden Berg, H. Tchelepi, "Quantification of organic content in shales via near-infrared imaging: Green River Formation." Fuel, (2017). Mehmani, Y., A.K. Burnham, M.D. Vanden Berg, F. Gelin, and H. Tchelepi. "Quantification of kerogen content in organic-rich shales from optical photographs." Fuel, (2016a). Mehmani, Y., A.K. Burnham, H. Tchelepi, "From optics to upscaled thermal conductivity: Green River oil shale." Fuel, (2016b).

Dusty Donuts: Modeling the Reverberation Response of the Circumnuclear Dusty Torus Emission in AGN

NASA Astrophysics Data System (ADS)

Almeyda, Triana R.

The obscuring circumnuclear torus of dusty molecular gas is one of the major components of AGN (active galactic nuclei), yet its size, composition, and structure are not well understood. These properties can be studied by analyzing the temporal variations of the infrared (IR) dust emission from the torus in response to variations in the AGN continuum luminosity; a technique known as reverberation mapping. In a recent international campaign 12 AGN were monitored using the Spitzer Space Telescope and several ground-based telescopes, providing a unique set of well-sampled mid-IR and optical light curves which are required in order to determine the approximate sizes of the tori in these AGN. To help extract structural information contained in the data a computer model, TORMAC, has been developed that simulates the reverberation response of the clumpy torus emission. Given an input optical light curve, the code computes the emission of a 3D ensemble of dust clouds as a function of time at selected IR wavelengths, taking into account light travel delays. A large library of torus reverberation response simulations has been constructed, to investigate the effects of various geometrical and structural properties such as inclination, cloud distribution, disk half-opening angle, and radial depth. The effects of dust cloud orientation, cloud optical depth, anisotropy of the illuminating AGN radiation field, dust cloud shadowing, and cloud occultation are also explored in detail. TORMAC was also used to generate synthetic IR light curves for the Seyfert 1 galaxy, NGC 6418, using the observed optical light curve as the input, to investigate how the torus and dust cloud properties incorporated in the code affect the results obtained from reverberation mapping. This dissertation presents the most comprehensive investigation to date showing that radiative transfer effects within the torus and anisotropic illumination of the torus can strongly influence the torus IR response at different wavelengths, and should be accounted for when interpreting reverberation mapping data. TORMAC provides a powerful modeling tool that can generate simulated IR light curves for direct comparison to observations. As many types of astronomical sources are both variable and embedded in, or surrounded, by dust, TORMAC also has applications for dust reverberation studies well beyond the AGN observed in the Spitzer monitoring campaign.

The Primordial Inflation Polarization Explorer: Science from Circular Polarization Measurements

NASA Astrophysics Data System (ADS)

Switzer, Eric; Ade, P.; Benford, D. J.; Bennett, C. L.; Chuss, D. T.; Dotson, J. L.; Eimer, J.; Fixsen, D. J.; Halpern, M.; Hinshaw, G. F.; Irwin, K.; Jhabvala, C.; Johnson, B.; Kogut, A. J.; Lazear, J.; Mirel, P.; Moseley, S. H.; Staguhn, J.; Tucker, C. E.; Weston, A.; Wollack, E.

2014-01-01

The Primordial Inflation Polarization Explorer (PIPER) is a balloon-borne CMB polarimeter designed to constrain the B-mode signature of cosmological inflation. Sequential one-day flights from Northern- and Southern- Hemisphere sites will yield maps of Stokes I, Q, U and V at 200, 270, 350 and 600 GHz over 85% of the sky. The full optical path is cooled to 1.5 K by liquid helium in the ARCADE bucket dewar, and a variable-delay polarization modulator (VPM) at the front of the optics modulates the polarization response. Independent Q and U cameras each have two 32x40 Transition Edge Sensor array receivers. In addition to its primary inflationary science goal, PIPER will also measure the circular (Stokes V) polarization to a depth similar to that of the primary linear polarization. The circular polarization has received relatively little attention in large-area surveys, with constraints from the 1980’s and recent results by the Milan Polarimeter. Astrophysical circular polarization is generally tied to the presence of magnetic fields, either in relativistic plasmas or Zeeman splitting of resonances. These effects are thought to be undetectable at PIPER's frequencies and resolution, despite the depth. The expectation of a null result makes the deep Stokes V map a good cross-check for experimental systematics. More fundamentally, the fact that the sky is expected to be dark in Stokes V makes it a sector sensitive to processes such as Lorentz-violating terms in the standard model or magnetic fields in the CMB era.

Longitudinal analysis on human cervical tissue using optical coherence tomography (Conference Presentation)

NASA Astrophysics Data System (ADS)

Gan, Yu; Yao, Wang; Myers, Kristin M.; Vink, Joy-Sarah Y.; Wapner, Ronald J.; Hendon, Christine P.

2017-02-01

Uterine cervical collagen fiber network is vital to the normal cervical function in pregnancy. Previously, we presented an orientation estimation method to enable dispersion analysis on a single axial slice of human cervical tissue obtained from the upper half of cervix using optical coherence tomography (OCT). How the collagen fiber network structure changes from the internal os (top of the cervix which meets the uterus) to external os (bottom of cervix which extends into the vagina), remains unknown due to depth penetration limitations of OCT. To establish a collagen fiber directionality "map" of the entire cervix, we imaged serial axial slices of human NP (n=11) and PG (n=2) cervical tissue obtained from the internal to external os using Institutional Review Board approved protocols at Columbia University Medical Center. Each slice was divided into four quadrants. In each quadrant, we stitched multiple overlapped OCT volumes and analyzed the en face images that were parallel to the surface. A pixel-wise directionality map was generated. We analyzed fiber trend by measuring the mean angles and quantified dispersion by calculating the standard deviation of the fiber direction over a region of 400 μm × 400 μm. For the initial four samples, our analysis confirms a circumferential fiber pattern in the outer region of slices at all depths. We found that the standard deviation close to internal os showed no significance to the standard deviation close to external os (p>0.05), indicating comparable dispersion.

Fast IR laser mapping ellipsometry for the study of functional organic thin films.

PubMed

Furchner, Andreas; Sun, Guoguang; Ketelsen, Helge; Rappich, Jörg; Hinrichs, Karsten

2015-03-21

Fast infrared mapping with sub-millimeter lateral resolution as well as time-resolved infrared studies of kinetic processes of functional organic thin films require a new generation of infrared ellipsometers. We present a novel laboratory-based infrared (IR) laser mapping ellipsometer, in which a laser is coupled to a variable-angle rotating analyzer ellipsometer. Compared to conventional Fourier-transform infrared (FT-IR) ellipsometers, the IR laser ellipsometer provides ten- to hundredfold shorter measurement times down to 80 ms per measured spot, as well as about tenfold increased lateral resolution of 120 μm, thus enabling mapping of small sample areas with thin-film sensitivity. The ellipsometer, equipped with a HeNe laser emitting at about 2949 cm(-1), was applied for the optical characterization of inhomogeneous poly(3-hexylthiophene) [P3HT] and poly(N-isopropylacrylamide) [PNIPAAm] organic thin films used for opto-electronics and bioapplications. With the constant development of tunable IR laser sources, laser-based infrared ellipsometry is a promising technique for fast in-depth mapping characterization of thin films and blends.

3-D photoacoustic and pulse echo imaging of prostate tumor progression in the mouse window chamber

NASA Astrophysics Data System (ADS)

Bauer, Daniel R.; Olafsson, Ragnar; Montilla, Leonardo G.; Witte, Russell S.

2011-02-01

Understanding the tumor microenvironment is critical to characterizing how cancers operate and predicting their response to treatment. We describe a novel, high-resolution coregistered photoacoustic (PA) and pulse echo (PE) ultrasound system used to image the tumor microenvironment. Compared to traditional optical systems, the platform provides complementary contrast and important depth information. Three mice are implanted with a dorsal skin flap window chamber and injected with PC-3 prostate tumor cells transfected with green fluorescent protein. The ensuing tumor invasion is mapped during three weeks or more using simultaneous PA and PE imaging at 25 MHz, combined with optical and fluorescent techniques. Pulse echo imaging provides details of tumor structure and the surrounding environment with 100-μm3 resolution. Tumor size increases dramatically with an average volumetric growth rate of 5.35 mm3/day, correlating well with 2-D fluorescent imaging (R = 0.97, p < 0.01). Photoacoustic imaging is able to track the underlying vascular network and identify hemorrhaging, while PA spectroscopy helps classify blood vessels according to their optical absorption spectrum, suggesting variation in blood oxygen saturation. Photoacoustic and PE imaging are safe, translational modalities that provide enhanced depth resolution and complementary contrast to track the tumor microenvironment, evaluate new cancer therapies, and develop molecular contrast agents in vivo.

Comparison of the different approaches to generate holograms from data acquired with a Kinect sensor

NASA Astrophysics Data System (ADS)

Kang, Ji-Hoon; Leportier, Thibault; Ju, Byeong-Kwon; Song, Jin Dong; Lee, Kwang-Hoon; Park, Min-Chul

2017-05-01

Data of real scenes acquired in real-time with a Kinect sensor can be processed with different approaches to generate a hologram. 3D models can be generated from a point cloud or a mesh representation. The advantage of the point cloud approach is that computation process is well established since it involves only diffraction and propagation of point sources between parallel planes. On the other hand, the mesh representation enables to reduce the number of elements necessary to represent the object. Then, even though the computation time for the contribution of a single element increases compared to a simple point, the total computation time can be reduced significantly. However, the algorithm is more complex since propagation of elemental polygons between non-parallel planes should be implemented. Finally, since a depth map of the scene is acquired at the same time than the intensity image, a depth layer approach can also be adopted. This technique is appropriate for a fast computation since propagation of an optical wavefront from one plane to another can be handled efficiently with the fast Fourier transform. Fast computation with depth layer approach is convenient for real time applications, but point cloud method is more appropriate when high resolution is needed. In this study, since Kinect can be used to obtain both point cloud and depth map, we examine the different approaches that can be adopted for hologram computation and compare their performance.

South American smoke coverage and flux estimations from the Fire Locating and Modeling of Burning Emissions (FLAMBE') system.

NASA Astrophysics Data System (ADS)

Reid, J. S.; Westphal, D. L.; Christopher, S. A.; Prins, E. M.; Gasso, S.; Reid, E.; Theisen, M.; Schmidt, C. C.; Hunter, J.; Eck, T.

2002-05-01

The Fire Locating and Modeling of Burning Emissions (FLAMBE') project is a joint Navy, NOAA, NASA and university project to integrate satellite products with numerical aerosol models to produce a real time fire and emissions inventory. At the center of the program is the Wildfire Automated Biomass Burning Algorithm (WF ABBA) which provides real-time fire products and the NRL Aerosol Analysis and Prediction System to model smoke transport. In this presentation we give a brief overview of the system and methods, but emphasize new estimations of smoke coverage and emission fluxes from the South American continent. Temporal and smoke patterns compare reasonably well with AERONET and MODIS aerosol optical depth products for the 2000 and 2001 fire seasons. Fluxes are computed by relating NAAPS output fields and MODIS optical depth maps with modeled wind fields. Smoke emissions and transport fluxes out of the continent can then be estimated by perturbing the modeled emissions to gain agreement with the satellite and wind products. Regional smoke emissions are also presented for grass and forest burning.

Dense depth maps from correspondences derived from perceived motion

NASA Astrophysics Data System (ADS)

Kirby, Richard; Whitaker, Ross

2017-01-01

Many computer vision applications require finding corresponding points between images and using the corresponding points to estimate disparity. Today's correspondence finding algorithms primarily use image features or pixel intensities common between image pairs. Some 3-D computer vision applications, however, do not produce the desired results using correspondences derived from image features or pixel intensities. Two examples are the multimodal camera rig and the center region of a coaxial camera rig. We present an image correspondence finding technique that aligns pairs of image sequences using optical flow fields. The optical flow fields provide information about the structure and motion of the scene, which are not available in still images but can be used in image alignment. We apply the technique to a dual focal length stereo camera rig consisting of a visible light-infrared camera pair and to a coaxial camera rig. We test our method on real image sequences and compare our results with the state-of-the-art multimodal and structure from motion (SfM) algorithms. Our method produces more accurate depth and scene velocity reconstruction estimates than the state-of-the-art multimodal and SfM algorithms.

Processing and analysis of cardiac optical mapping data obtained with potentiometric dyes

PubMed Central

Laughner, Jacob I.; Ng, Fu Siong; Sulkin, Matthew S.; Arthur, R. Martin

2012-01-01

Optical mapping has become an increasingly important tool to study cardiac electrophysiology in the past 20 years. Multiple methods are used to process and analyze cardiac optical mapping data, and no consensus currently exists regarding the optimum methods. The specific methods chosen to process optical mapping data are important because inappropriate data processing can affect the content of the data and thus alter the conclusions of the studies. Details of the different steps in processing optical imaging data, including image segmentation, spatial filtering, temporal filtering, and baseline drift removal, are provided in this review. We also provide descriptions of the common analyses performed on data obtained from cardiac optical imaging, including activation mapping, action potential duration mapping, repolarization mapping, conduction velocity measurements, and optical action potential upstroke analysis. Optical mapping is often used to study complex arrhythmias, and we also discuss dominant frequency analysis and phase mapping techniques used for the analysis of cardiac fibrillation. PMID:22821993

Fusion of Kinect depth data with trifocal disparity estimation for near real-time high quality depth maps generation

NASA Astrophysics Data System (ADS)

Boisson, Guillaume; Kerbiriou, Paul; Drazic, Valter; Bureller, Olivier; Sabater, Neus; Schubert, Arno

2014-03-01

Generating depth maps along with video streams is valuable for Cinema and Television production. Thanks to the improvements of depth acquisition systems, the challenge of fusion between depth sensing and disparity estimation is widely investigated in computer vision. This paper presents a new framework for generating depth maps from a rig made of a professional camera with two satellite cameras and a Kinect device. A new disparity-based calibration method is proposed so that registered Kinect depth samples become perfectly consistent with disparities estimated between rectified views. Also, a new hierarchical fusion approach is proposed for combining on the flow depth sensing and disparity estimation in order to circumvent their respective weaknesses. Depth is determined by minimizing a global energy criterion that takes into account the matching reliability and the consistency with the Kinect input. Thus generated depth maps are relevant both in uniform and textured areas, without holes due to occlusions or structured light shadows. Our GPU implementation reaches 20fps for generating quarter-pel accurate HD720p depth maps along with main view, which is close to real-time performances for video applications. The estimated depth is high quality and suitable for 3D reconstruction or virtual view synthesis.

High resolution multispectral photogrammetric imagery: enhancement, interpretation and evaluations

NASA Astrophysics Data System (ADS)

Roberts, Arthur; Haefele, Martin; Bostater, Charles; Becker, Thomas

2007-10-01

A variety of aerial mapping cameras were adapted and developed into simulated multiband digital photogrammetric mapping systems. Direct digital multispectral, two multiband cameras (IIS 4 band and Itek 9 band) and paired mapping and reconnaissance cameras were evaluated for digital spectral performance and photogrammetric mapping accuracy in an aquatic environment. Aerial films (24cm X 24cm format) tested were: Agfa color negative and extended red (visible and near infrared) panchromatic, and; Kodak color infrared and B&W (visible and near infrared) infrared. All films were negative processed to published standards and digitally converted at either 16 (color) or 10 (B&W) microns. Excellent precision in the digital conversions was obtained with scanning errors of less than one micron. Radiometric data conversion was undertaken using linear density conversion and centered 8 bit histogram exposure. This resulted in multiple 8 bit spectral image bands that were unaltered (not radiometrically enhanced) "optical count" conversions of film density. This provided the best film density conversion to a digital product while retaining the original film density characteristics. Data covering water depth, water quality, surface roughness, and bottom substrate were acquired using different measurement techniques as well as different techniques to locate sampling points on the imagery. Despite extensive efforts to obtain accurate ground truth data location errors, measurement errors, and variations in the correlation between water depth and remotely sensed signal persisted. These errors must be considered endemic and may not be removed through even the most elaborate sampling set up. Results indicate that multispectral photogrammetric systems offer improved feature mapping capability.

Depth map occlusion filling and scene reconstruction using modified exemplar-based inpainting

NASA Astrophysics Data System (ADS)

Voronin, V. V.; Marchuk, V. I.; Fisunov, A. V.; Tokareva, S. V.; Egiazarian, K. O.

2015-03-01

RGB-D sensors are relatively inexpensive and are commercially available off-the-shelf. However, owing to their low complexity, there are several artifacts that one encounters in the depth map like holes, mis-alignment between the depth and color image and lack of sharp object boundaries in the depth map. Depth map generated by Kinect cameras also contain a significant amount of missing pixels and strong noise, limiting their usability in many computer vision applications. In this paper, we present an efficient hole filling and damaged region restoration method that improves the quality of the depth maps obtained with the Microsoft Kinect device. The proposed approach is based on a modified exemplar-based inpainting and LPA-ICI filtering by exploiting the correlation between color and depth values in local image neighborhoods. As a result, edges of the objects are sharpened and aligned with the objects in the color image. Several examples considered in this paper show the effectiveness of the proposed approach for large holes removal as well as recovery of small regions on several test images of depth maps. We perform a comparative study and show that statistically, the proposed algorithm delivers superior quality results compared to existing algorithms.

Satellite Snow-Cover Mapping: A Brief Review

NASA Technical Reports Server (NTRS)

Hall, Dorothy K.

1995-01-01

Satellite snow mapping has been accomplished since 1966, initially using data from the reflective part of the electromagnetic spectrum, and now also employing data from the microwave part of the spectrum. Visible and near-infrared sensors can provide excellent spatial resolution from space enabling detailed snow mapping. When digital elevation models are also used, snow mapping can provide realistic measurements of snow extent even in mountainous areas. Passive-microwave satellite data permit global snow cover to be mapped on a near-daily basis and estimates of snow depth to be made, but with relatively poor spatial resolution (approximately 25 km). Dense forest cover limits both techniques and optical remote sensing is limited further by cloudcover conditions. Satellite remote sensing of snow cover with imaging radars is still in the early stages of research, but shows promise at least for mapping wet or melting snow using C-band (5.3 GHz) synthetic aperture radar (SAR) data. Observing System (EOS) Moderate Resolution Imaging Spectroradiometer (MODIS) data beginning with the launch of the first EOS platform in 1998. Digital maps will be produced that will provide daily, and maximum weekly global snow, sea ice and lake ice cover at 1-km spatial resolution. Statistics will be generated on the extent and persistence of snow or ice cover in each pixel for each weekly map, cloudcover permitting. It will also be possible to generate snow- and ice-cover maps using MODIS data at 250- and 500-m resolution, and to study and map snow and ice characteristics such as albedo. been under development. Passive-microwave data offer the potential for determining not only snow cover, but snow water equivalent, depth and wetness under all sky conditions. A number of algorithms have been developed to utilize passive-microwave brightness temperatures to provide information on snow cover and water equivalent. The variability of vegetative Algorithms are being developed to map global snow and ice cover using Earth Algorithms to map global snow cover using passive-microwave data have also cover and of snow grain size, globally, limits the utility of a single algorithm to map global snow cover.

Micro-optical system based 3D imaging for full HD depth image capturing

NASA Astrophysics Data System (ADS)

Park, Yong-Hwa; Cho, Yong-Chul; You, Jang-Woo; Park, Chang-Young; Yoon, Heesun; Lee, Sang-Hun; Kwon, Jong-Oh; Lee, Seung-Wan

2012-03-01

20 Mega-Hertz-switching high speed image shutter device for 3D image capturing and its application to system prototype are presented. For 3D image capturing, the system utilizes Time-of-Flight (TOF) principle by means of 20MHz high-speed micro-optical image modulator, so called 'optical shutter'. The high speed image modulation is obtained using the electro-optic operation of the multi-layer stacked structure having diffractive mirrors and optical resonance cavity which maximizes the magnitude of optical modulation. The optical shutter device is specially designed and fabricated realizing low resistance-capacitance cell structures having small RC-time constant. The optical shutter is positioned in front of a standard high resolution CMOS image sensor and modulates the IR image reflected from the object to capture a depth image. Suggested novel optical shutter device enables capturing of a full HD depth image with depth accuracy of mm-scale, which is the largest depth image resolution among the-state-of-the-arts, which have been limited up to VGA. The 3D camera prototype realizes color/depth concurrent sensing optical architecture to capture 14Mp color and full HD depth images, simultaneously. The resulting high definition color/depth image and its capturing device have crucial impact on 3D business eco-system in IT industry especially as 3D image sensing means in the fields of 3D camera, gesture recognition, user interface, and 3D display. This paper presents MEMS-based optical shutter design, fabrication, characterization, 3D camera system prototype and image test results.

Optical-domain subsampling for data efficient depth ranging in Fourier-domain optical coherence tomography

PubMed Central

Siddiqui, Meena; Vakoc, Benjamin J.

2012-01-01

Recent advances in optical coherence tomography (OCT) have led to higher-speed sources that support imaging over longer depth ranges. Limitations in the bandwidth of state-of-the-art acquisition electronics, however, prevent adoption of these advances into the clinical applications. Here, we introduce optical-domain subsampling as a method for imaging at high-speeds and over extended depth ranges but with a lower acquisition bandwidth than that required using conventional approaches. Optically subsampled laser sources utilize a discrete set of wavelengths to alias fringe signals along an extended depth range into a bandwidth limited frequency window. By detecting the complex fringe signals and under the assumption of a depth-constrained signal, optical-domain subsampling enables recovery of the depth-resolved scattering signal without overlapping artifacts from this bandwidth-limited window. We highlight key principles behind optical-domain subsampled imaging, and demonstrate this principle experimentally using a polygon-filter based swept-source laser that includes an intra-cavity Fabry-Perot (FP) etalon. PMID:23038343

High-speed polarization sensitive optical frequency domain imaging with frequency multiplexing

PubMed Central

Yun, S.H.; Vakoc, B.J.; Shishkov, M.; Desjardins, A.E.; Park, B.H.; de Boer, J.F.; Tearney, G.J.; Bouma, B.E.

2009-01-01

Polarization sensitive optical coherence tomography (PS-OCT) provides a cross-sectional image of birefringence in biological samples that is complementary in many applications to the standard reflectance-based image. Recent ex vivo studies have demonstrated that birefringence mapping enables the characterization of collagen and smooth muscle concentration and distribution in vascular tissues. Instruments capable of applying these measurements percutaneously in vivo may provide new insights into coronary atherosclerosis and acute myocardial infarction. We have developed a polarization sensitive optical frequency domain imaging (PS-OFDI) system that enables high-speed intravascular birefringence imaging through a fiber-optic catheter. The novel design of this system utilizes frequency multiplexing to simultaneously measure reflectance of two incident polarization states, overcoming concerns regarding temporal variations of the catheter fiber birefringence and spatial variations in the birefringence of the sample. We demonstrate circular cross-sectional birefringence imaging of a human coronary artery ex vivo through a flexible fiber-optic catheter with an A-line rate of 62 kHz and a ranging depth of 6.2 mm. PMID:18542183

Focusing light through scattering media by polarization modulation based generalized digital optical phase conjugation

NASA Astrophysics Data System (ADS)

Yang, Jiamiao; Shen, Yuecheng; Liu, Yan; Hemphill, Ashton S.; Wang, Lihong V.

2017-11-01

Optical scattering prevents light from being focused through thick biological tissue at depths greater than ˜1 mm. To break this optical diffusion limit, digital optical phase conjugation (DOPC) based wavefront shaping techniques are being actively developed. Previous DOPC systems employed spatial light modulators that modulated either the phase or the amplitude of the conjugate light field. Here, we achieve optical focusing through scattering media by using polarization modulation based generalized DOPC. First, we describe an algorithm to extract the polarization map from the measured scattered field. Then, we validate the algorithm through numerical simulations and find that the focusing contrast achieved by polarization modulation is similar to that achieved by phase modulation. Finally, we build a system using an inexpensive twisted nematic liquid crystal based spatial light modulator (SLM) and experimentally demonstrate light focusing through 3-mm thick chicken breast tissue. Since the polarization modulation based SLMs are widely used in displays and are having more and more pixel counts with the prevalence of 4 K displays, these SLMs are inexpensive and valuable devices for wavefront shaping.

Atrial fibrillation driven by micro-anatomic intramural re-entry revealed by simultaneous sub-epicardial and sub-endocardial optical mapping in explanted human hearts.

PubMed

Hansen, Brian J; Zhao, Jichao; Csepe, Thomas A; Moore, Brandon T; Li, Ning; Jayne, Laura A; Kalyanasundaram, Anuradha; Lim, Praise; Bratasz, Anna; Powell, Kimerly A; Simonetti, Orlando P; Higgins, Robert S D; Kilic, Ahmet; Mohler, Peter J; Janssen, Paul M L; Weiss, Raul; Hummel, John D; Fedorov, Vadim V

2015-09-14

The complex architecture of the human atria may create physical substrates for sustained re-entry to drive atrial fibrillation (AF). The existence of sustained, anatomically defined AF drivers in humans has been challenged partly due to the lack of simultaneous endocardial-epicardial (Endo-Epi) mapping coupled with high-resolution 3D structural imaging. Coronary-perfused human right atria from explanted diseased hearts (n = 8, 43-72 years old) were optically mapped simultaneously by three high-resolution CMOS cameras (two aligned Endo-Epi views (330 µm2 resolution) and one panoramic view). 3D gadolinium-enhanced magnetic resonance imaging (GE-MRI, 80 µm3 resolution) revealed the atrial wall structure varied in thickness (1.0 ± 0.7-6.8 ± 2.4 mm), transmural fiber angle differences, and interstitial fibrosis causing transmural activation delay from 23 ± 11 to 43 ± 22 ms at increased pacing rates. Sustained AF (>90 min) was induced by burst pacing during pinacidil (30-100 µM) perfusion. Dual-sided sub-Endo-sub-Epi optical mapping revealed that AF was driven by spatially and temporally stable intramural re-entry with 107 ± 50 ms cycle length and transmural activation delay of 67 ± 31 ms. Intramural re-entrant drivers were captured primarily by sub-Endo mapping, while sub-Epi mapping visualized re-entry or 'breakthrough' patterns. Re-entrant drivers were anchored on 3D micro-anatomic tracks (15.4 ± 2.2 × 6.0 ± 2.3 mm2, 2.9 ± 0.9 mm depth) formed by atrial musculature characterized by increased transmural fiber angle differences and interstitial fibrosis. Targeted radiofrequency ablation of the tracks verified these re-entries as drivers of AF. Integrated 3D structural-functional mapping of diseased human right atria ex vivo revealed that the complex atrial microstructure caused significant differences between Endo vs. Epi activation during pacing and sustained AF driven by intramural re-entry anchored to fibrosis-insulated atrial bundles. Published on behalf of the European Society of Cardiology. All rights reserved. © The Author 2015. For permissions please email: journals.permissions@oup.com.

Atrial fibrillation driven by micro-anatomic intramural re-entry revealed by simultaneous sub-epicardial and sub-endocardial optical mapping in explanted human hearts

PubMed Central

Hansen, Brian J.; Zhao, Jichao; Csepe, Thomas A.; Moore, Brandon T.; Li, Ning; Jayne, Laura A.; Kalyanasundaram, Anuradha; Lim, Praise; Bratasz, Anna; Powell, Kimerly A.; Simonetti, Orlando P.; Higgins, Robert S.D.; Kilic, Ahmet; Mohler, Peter J.; Janssen, Paul M.L.; Weiss, Raul; Hummel, John D.; Fedorov, Vadim V.

2015-01-01

Aims The complex architecture of the human atria may create physical substrates for sustained re-entry to drive atrial fibrillation (AF). The existence of sustained, anatomically defined AF drivers in humans has been challenged partly due to the lack of simultaneous endocardial–epicardial (Endo–Epi) mapping coupled with high-resolution 3D structural imaging. Methods and results Coronary-perfused human right atria from explanted diseased hearts (n = 8, 43–72 years old) were optically mapped simultaneously by three high-resolution CMOS cameras (two aligned Endo–Epi views (330 µm2 resolution) and one panoramic view). 3D gadolinium-enhanced magnetic resonance imaging (GE-MRI, 80 µm3 resolution) revealed the atrial wall structure varied in thickness (1.0 ± 0.7–6.8 ± 2.4 mm), transmural fiber angle differences, and interstitial fibrosis causing transmural activation delay from 23 ± 11 to 43 ± 22 ms at increased pacing rates. Sustained AF (>90 min) was induced by burst pacing during pinacidil (30–100 µM) perfusion. Dual-sided sub-Endo–sub-Epi optical mapping revealed that AF was driven by spatially and temporally stable intramural re-entry with 107 ± 50 ms cycle length and transmural activation delay of 67 ± 31 ms. Intramural re-entrant drivers were captured primarily by sub-Endo mapping, while sub-Epi mapping visualized re-entry or ‘breakthrough’ patterns. Re-entrant drivers were anchored on 3D micro-anatomic tracks (15.4 ± 2.2 × 6.0 ± 2.3 mm2, 2.9 ± 0.9 mm depth) formed by atrial musculature characterized by increased transmural fiber angle differences and interstitial fibrosis. Targeted radiofrequency ablation of the tracks verified these re-entries as drivers of AF. Conclusions Integrated 3D structural–functional mapping of diseased human right atria ex vivo revealed that the complex atrial microstructure caused significant differences between Endo vs. Epi activation during pacing and sustained AF driven by intramural re-entry anchored to fibrosis-insulated atrial bundles. PMID:26059724

Smoke Over Haze: Comparative Analysis of Satellite, Surface Radiometer and Airborne In-Situ Measurements of Aerosol Optical Properties and Radiative Forcing Over the Eastern US

NASA Astrophysics Data System (ADS)

vant-Hull, B.; Li, Z.; Taubman, B.; Marufu, L.; Levy, R.; Chang, F.; Doddridge, B.; Dickerson, R.

2004-12-01

In July 2002 Canadian forest fires produced a major smoke episode that blanketed the U.S. East Coast. Properties of the smoke aerosol were measured in-situ from aircraft, complementing operational AERONET and MODIS remote sensed aerosol retrievals. This study compares single scattering albedo and phase function derived from the in-situ measurements and AERONET retrievals in order to evaluate their consistency for application to satellite retrievals of optical depth and radiative forcing. These optical properties were combined with MODIS reflectance observations to calculate optical depth. The use of AERONET optical properties yielded optical depths 2% to 16% lower than those directly measured by AERONET. The use of in-situ derived optical properties resulted in optical depths 22% to 43% higher than AERONET measurements. These higher optical depths are attributed primarily to the higher absorption measured in-situ, which is roughly twice that retrieved by AERONET. The resulting satellite retrieved optical depths were in turn used to calculate integrated radiative forcing at both the surface and TOA. Comparisons to surface (SurfRad and ISIS) and to satellite (CERES) broadband radiometer measurements demonstrate that the use of optical properties derived from the aircraft measurements provided a better broadband forcing estimate (21% error) than those derived from AERONET (33% error). Thus AERONET derived optical properties produced better fits to optical depth measurements, while in-situ properties resulted in better fits to forcing measurements. These apparent inconsistencies underline the significant challenges facing the aerosol community in achieving column closure between narrow and broadband measurements and calculations.

Realization of arbitrarily long focus-depth optical vortices with spiral area-varying zone plates

NASA Astrophysics Data System (ADS)

Zheng, Chenglong; Zang, Huaping; Du, Yanli; Tian, Yongzhi; Ji, Ziwen; Zhang, Jing; Fan, Quanping; Wang, Chuanke; Cao, Leifeng; Liang, Erjun

2018-05-01

We provide a methodology to realize an optical vortex with arbitrarily long focus-depth. With a technique of varying each zone area of a phase spiral zone plate one can obtain optics capable of generating ultra-long focus-depth optical vortex from a plane wave. The focal property of such optics was analysed using the Fresnel diffraction theory, and an experimental demonstration was performed to verify its effectiveness. Such optics may bring new opportunity and benefits for optical vortex application such as optical manipulation and lithography.

Constraining the low-cloud optical depth feedback at middle and high latitudes using satellite observations

DOE PAGES

Terai, C. R.; Klein, S. A.; Zelinka, M. D.

2016-08-26

The increase in cloud optical depth with warming at middle and high latitudes is a robust cloud feedback response found across all climate models. This study builds on results that suggest the optical depth response to temperature is timescale invariant for low-level clouds. The timescale invariance allows one to use satellite observations to constrain the models' optical depth feedbacks. Three passive-sensor satellite retrievals are compared against simulations from eight models from the Atmosphere Model Intercomparison Project (AMIP) of the 5th Coupled Model Intercomparison Project (CMIP5). This study confirms that the low-cloud optical depth response is timescale invariant in the AMIPmore » simulations, generally at latitudes higher than 40°. Compared to satellite estimates, most models overestimate the increase in optical depth with warming at the monthly and interannual timescales. Many models also do not capture the increase in optical depth with estimated inversion strength that is found in all three satellite observations and in previous studies. The discrepancy between models and satellites exists in both hemispheres and in most months of the year. A simple replacement of the models' optical depth sensitivities with the satellites' sensitivities reduces the negative shortwave cloud feedback by at least 50% in the 40°–70°S latitude band and by at least 65% in the 40°–70°N latitude band. Furthermore, based on this analysis of satellite observations, we conclude that the low-cloud optical depth feedback at middle and high latitudes is likely too negative in climate models.« less

Constraining the low-cloud optical depth feedback at middle and high latitudes using satellite observations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Terai, C. R.; Klein, S. A.; Zelinka, M. D.

The increase in cloud optical depth with warming at middle and high latitudes is a robust cloud feedback response found across all climate models. This study builds on results that suggest the optical depth response to temperature is timescale invariant for low-level clouds. The timescale invariance allows one to use satellite observations to constrain the models' optical depth feedbacks. Three passive-sensor satellite retrievals are compared against simulations from eight models from the Atmosphere Model Intercomparison Project (AMIP) of the 5th Coupled Model Intercomparison Project (CMIP5). This study confirms that the low-cloud optical depth response is timescale invariant in the AMIPmore » simulations, generally at latitudes higher than 40°. Compared to satellite estimates, most models overestimate the increase in optical depth with warming at the monthly and interannual timescales. Many models also do not capture the increase in optical depth with estimated inversion strength that is found in all three satellite observations and in previous studies. The discrepancy between models and satellites exists in both hemispheres and in most months of the year. A simple replacement of the models' optical depth sensitivities with the satellites' sensitivities reduces the negative shortwave cloud feedback by at least 50% in the 40°–70°S latitude band and by at least 65% in the 40°–70°N latitude band. Furthermore, based on this analysis of satellite observations, we conclude that the low-cloud optical depth feedback at middle and high latitudes is likely too negative in climate models.« less

High-speed single-shot optical focusing through dynamic scattering media with full-phase wavefront shaping.

PubMed

Hemphill, Ashton S; Shen, Yuecheng; Liu, Yan; Wang, Lihong V

2017-11-27

In biological applications, optical focusing is limited by the diffusion of light, which prevents focusing at depths greater than ∼1 mm in soft tissue. Wavefront shaping extends the depth by compensating for phase distortions induced by scattering and thus allows for focusing light through biological tissue beyond the optical diffusion limit by using constructive interference. However, due to physiological motion, light scattering in tissue is deterministic only within a brief speckle correlation time. In in vivo tissue, this speckle correlation time is on the order of milliseconds, and so the wavefront must be optimized within this brief period. The speed of digital wavefront shaping has typically been limited by the relatively long time required to measure and display the optimal phase pattern. This limitation stems from the low speeds of cameras, data transfer and processing, and spatial light modulators. While binary-phase modulation requiring only two images for the phase measurement has recently been reported, most techniques require at least three frames for the full-phase measurement. Here, we present a full-phase digital optical phase conjugation method based on off-axis holography for single-shot optical focusing through scattering media. By using off-axis holography in conjunction with graphics processing unit based processing, we take advantage of the single-shot full-phase measurement while using parallel computation to quickly reconstruct the phase map. With this system, we can focus light through scattering media with a system latency of approximately 9 ms, on the order of the in vivo speckle correlation time.

High-speed single-shot optical focusing through dynamic scattering media with full-phase wavefront shaping

NASA Astrophysics Data System (ADS)

Hemphill, Ashton S.; Shen, Yuecheng; Liu, Yan; Wang, Lihong V.

2017-11-01

In biological applications, optical focusing is limited by the diffusion of light, which prevents focusing at depths greater than ˜1 mm in soft tissue. Wavefront shaping extends the depth by compensating for phase distortions induced by scattering and thus allows for focusing light through biological tissue beyond the optical diffusion limit by using constructive interference. However, due to physiological motion, light scattering in tissue is deterministic only within a brief speckle correlation time. In in vivo tissue, this speckle correlation time is on the order of milliseconds, and so the wavefront must be optimized within this brief period. The speed of digital wavefront shaping has typically been limited by the relatively long time required to measure and display the optimal phase pattern. This limitation stems from the low speeds of cameras, data transfer and processing, and spatial light modulators. While binary-phase modulation requiring only two images for the phase measurement has recently been reported, most techniques require at least three frames for the full-phase measurement. Here, we present a full-phase digital optical phase conjugation method based on off-axis holography for single-shot optical focusing through scattering media. By using off-axis holography in conjunction with graphics processing unit based processing, we take advantage of the single-shot full-phase measurement while using parallel computation to quickly reconstruct the phase map. With this system, we can focus light through scattering media with a system latency of approximately 9 ms, on the order of the in vivo speckle correlation time.

Aerosol spectral optical depths - Jet fuel and forest fire smokes

NASA Technical Reports Server (NTRS)

Pueschel, R. F.; Livingston, J. M.

1990-01-01

The Ames autotracking airborne sun photometer was used to investigate the spectral depth between 380 and 1020 nm of smokes from a jet fuel pool fire and a forest fire in May and August 1988, respectively. Results show that the forest fire smoke exhibited a stronger wavelength dependence of optical depths than did the jet fuel fire smoke at optical depths less than unity. At optical depths greater than or equal to 1, both smokes showed neutral wavelength dependence, similar to that of an optically thin stratus deck. These results verify findings of earlier investigations and have implications both on the climatic impact of large-scale smokes and on the wavelength-dependent transmission of electromagnetic signals.

Evaluating methods for controlling depth perception in stereoscopic cinematography

NASA Astrophysics Data System (ADS)

Sun, Geng; Holliman, Nick

2009-02-01

Existing stereoscopic imaging algorithms can create static stereoscopic images with perceived depth control function to ensure a compelling 3D viewing experience without visual discomfort. However, current algorithms do not normally support standard Cinematic Storytelling techniques. These techniques, such as object movement, camera motion, and zooming, can result in dynamic scene depth change within and between a series of frames (shots) in stereoscopic cinematography. In this study, we empirically evaluate the following three types of stereoscopic imaging approaches that aim to address this problem. (1) Real-Eye Configuration: set camera separation equal to the nominal human eye interpupillary distance. The perceived depth on the display is identical to the scene depth without any distortion. (2) Mapping Algorithm: map the scene depth to a predefined range on the display to avoid excessive perceived depth. A new method that dynamically adjusts the depth mapping from scene space to display space is presented in addition to an existing fixed depth mapping method. (3) Depth of Field Simulation: apply Depth of Field (DOF) blur effect to stereoscopic images. Only objects that are inside the DOF are viewed in full sharpness. Objects that are far away from the focus plane are blurred. We performed a human-based trial using the ITU-R BT.500-11 Recommendation to compare the depth quality of stereoscopic video sequences generated by the above-mentioned imaging methods. Our results indicate that viewers' practical 3D viewing volumes are different for individual stereoscopic displays and viewers can cope with much larger perceived depth range in viewing stereoscopic cinematography in comparison to static stereoscopic images. Our new dynamic depth mapping method does have an advantage over the fixed depth mapping method in controlling stereo depth perception. The DOF blur effect does not provide the expected improvement for perceived depth quality control in 3D cinematography. We anticipate the results will be of particular interest to 3D filmmaking and real time computer games.

Foveal fine structure in retinopathy of prematurity: an adaptive optics Fourier domain optical coherence tomography study.

PubMed

Hammer, Daniel X; Iftimia, Nicusor V; Ferguson, R Daniel; Bigelow, Chad E; Ustun, Teoman E; Barnaby, Amber M; Fulton, Anne B

2008-05-01

To describe the fine structure of the fovea in subjects with a history of mild retinopathy of prematurity (ROP) using adaptive optics-Fourier domain optical coherence tomography (AO-FDOCT). High-speed, high-resolution AO-FDOCT videos were recorded in subjects with a history of ROP (n = 5; age range, 14-26 years) and in control subjects (n = 5; age range, 18-25 years). Custom software was used to extract foveal pit depth and volume from three-dimensional (3-D) retinal maps. The thickness of retinal layers as a function of retinal eccentricity was measured manually. The retinal vasculature in the parafoveal region was assessed. The foveal pit was wider and shallower in ROP than in control subjects. Mean pit depth, defined from the base to the level at which the pit reaches a lateral radius of 728 microm, was 121 microm compared with 53 microm. Intact, contiguous inner retinal layers overlay the fovea in ROP subjects but were absent in the control subjects. Mean full retinal thickness at the fovea was greater in the subjects with ROP (279.0 microm vs. 190.2 microm). The photoreceptor layer thickness did not differ between ROP and control subjects. An avascular zone was not identified in the subjects with ROP but was present in all the control subjects. The foveas of subjects with a history of mild ROP have significant structural abnormalities that are probably a consequence of perturbations of neurovascular development.

Smoke over haze: Comparative analysis of satellite, surface radiometer, and airborne in situ measurements of aerosol optical properties and radiative forcing over the eastern United States

NASA Astrophysics Data System (ADS)

Vant-Hull, Brian; Li, Zhanqing; Taubman, Brett F.; Levy, Robert; Marufu, Lackson; Chang, Fu-Lung; Doddridge, Bruce G.; Dickerson, Russell R.

2005-05-01

In July 2002 Canadian forest fires produced a major smoke episode that blanketed the east coast of the United States. Properties of the smoke aerosol were measured in situ from aircraft, complementing operational Aerosol Robotic Network (AERONET), and Moderate Resolution Imaging Spectroradiometer (MODIS) remotely sensed aerosol retrievals. This study compares single scattering albedo and phase function derived from the in situ measurements and AERONET retrievals in order to evaluate their consistency for application to satellite retrievals of optical depth and radiative forcing. These optical properties were combined with MODIS reflectance observations to calculate optical depth. The use of AERONET optical properties yielded optical depths 2-16% lower than those directly measured by AERONET. The use of in situ-derived optical properties resulted in optical depths 22-43% higher than AERONET measurements. These higher optical depths are attributed primarily to the higher absorption measured in situ, which is roughly twice that retrieved by AERONET. The resulting satellite retrieved optical depths were in turn used to calculate integrated radiative forcing at both the surface and top of atmosphere. Comparisons to surface (Surface Radiation Budget Network (SURFRAD) and ISIS) and to satellite (Clouds and Earth Radiant Energy System CERES) broadband radiometer measurements demonstrate that the use of optical properties derived from the aircraft measurements provided a better broadband forcing estimate (21% error) than those derived from AERONET (33% error). Thus AERONET-derived optical properties produced better fits to optical depth measurements, while in situ properties resulted in better fits to forcing measurements. These apparent inconsistencies underline the significant challenges facing the aerosol community in achieving column closure between narrow and broadband measurements and calculations.

High-speed image processing system and its micro-optics application

NASA Astrophysics Data System (ADS)

Ohba, Kohtaro; Ortega, Jesus C. P.; Tanikawa, Tamio; Tanie, Kazuo; Tajima, Kenji; Nagai, Hiroshi; Tsuji, Masataka; Yamada, Shigeru

2003-07-01

In this paper, a new application system with high speed photography, i.e. an observational system for the tele-micro-operation, has been proposed with a dynamic focusing system and a high-speed image processing system using the "Depth From Focus (DFF)" criteria. In micro operation, such as for the microsurgery, DNA operation and etc., the small depth of a focus on the microscope makes bad observation. For example, if the focus is on the object, the actuator cannot be seen with the microscope. On the other hand, if the focus is on the actuator, the object cannot be observed. In this sense, the "all-in-focus image," which holds the in-focused texture all over the image, is useful to observe the microenvironments on the microscope. It is also important to obtain the "depth map" which could show the 3D micro virtual environments in real-time to actuate the micro objects, intuitively. To realize the real-time micro operation with DFF criteria, which has to integrate several images to obtain "all-in-focus image" and "depth map," at least, the 240 frames par second based image capture and processing system should be required. At first, this paper briefly reviews the criteria of "depth from focus" to achieve the all-in-focus image and the 3D microenvironments' reconstruction, simultaneously. After discussing the problem in our past system, a new frame-rate system is constructed with the high-speed video camera and FPGA hardware with 240 frames par second. To apply this system in the real microscope, a new criterion "ghost filtering" technique to reconstruct the all-in-focus image is proposed. Finally, the micro observation shows the validity of this system.

Multi-Depth-Map Raytracing for Efficient Large-Scene Reconstruction.

PubMed

Arikan, Murat; Preiner, Reinhold; Wimmer, Michael

2016-02-01

With the enormous advances of the acquisition technology over the last years, fast processing and high-quality visualization of large point clouds have gained increasing attention. Commonly, a mesh surface is reconstructed from the point cloud and a high-resolution texture is generated over the mesh from the images taken at the site to represent surface materials. However, this global reconstruction and texturing approach becomes impractical with increasing data sizes. Recently, due to its potential for scalability and extensibility, a method for texturing a set of depth maps in a preprocessing and stitching them at runtime has been proposed to represent large scenes. However, the rendering performance of this method is strongly dependent on the number of depth maps and their resolution. Moreover, for the proposed scene representation, every single depth map has to be textured by the images, which in practice heavily increases processing costs. In this paper, we present a novel method to break these dependencies by introducing an efficient raytracing of multiple depth maps. In a preprocessing phase, we first generate high-resolution textured depth maps by rendering the input points from image cameras and then perform a graph-cut based optimization to assign a small subset of these points to the images. At runtime, we use the resulting point-to-image assignments (1) to identify for each view ray which depth map contains the closest ray-surface intersection and (2) to efficiently compute this intersection point. The resulting algorithm accelerates both the texturing and the rendering of the depth maps by an order of magnitude.

Mapping snow depth distribution in forested terrain using unmanned aerial vehicles and structure-from-motion

NASA Astrophysics Data System (ADS)

Webster, C.; Bühler, Y.; Schirmer, M.; Stoffel, A.; Giulia, M.; Jonas, T.

2017-12-01

Snow depth distribution in forests exhibits strong spatial heterogeneity compared to adjacent open sites. Measurement of snow depths in forests is currently limited to a) manual point measurements, which are sparse and time-intensive, b) ground-penetrating radar surveys, which have limited spatial coverage, or c) airborne LiDAR acquisition, which are expensive and may deteriorate in denser forests. We present the application of unmanned aerial vehicles in combination with structure-from-motion (SfM) methods to photogrammetrically map snow depth distribution in forested terrain. Two separate flights were carried out 10 days apart across a heterogeneous forested area of 900 x 500 m. Corresponding snow depth maps were derived using both, LiDAR-based and SfM-based DTM data, obtained during snow-off conditions. Manual measurements collected following each flight were used to validate the snow depth maps. Snow depths were resolved at 5cm resolution and forest snow depth distribution structures such as tree wells and other areas of preferential melt were represented well. Differential snow depth maps showed maximum ablation in the exposed south sides of trees and smaller differences in the centre of gaps and on the north side of trees. This new application of SfM to map snow depth distribution in forests demonstrates a straightforward method for obtaining information that was previously only available through manual spatially limited ground-based measurements. These methods could therefore be extended to more frequent observation of snow depths in forests as well as estimating snow accumulation and depletion rates.

Stratospheric aerosol optical depths, 1850-1990

NASA Technical Reports Server (NTRS)

Sato, Makiko; Hansen, James E.; Mccormick, M. Patrick; Pollack, James B.

1993-01-01

A global stratospheric aerosol database employed for climate simulations is described. For the period 1883-1990, aerosol optical depths are estimated from optical extinction data, whose quality increases with time over that period. For the period 1850-1882, aerosol optical depths are more crudely estimated from volcanological evidence for the volume of ejecta from major known volcanoes. The data set is available over Internet.

Determination of effective droplet radius and optical depth of liquid water clouds over a tropical site in northern Thailand using passive microwave soundings, aircraft measurements and spectral irradiance data

NASA Astrophysics Data System (ADS)

Nimnuan, P.; Janjai, S.; Nunez, M.; Pratummasoot, N.; Buntoung, S.; Charuchittipan, D.; Chanyatham, T.; Chantraket, P.; Tantiplubthong, N.

2017-08-01

This paper presents an algorithm for deriving the effective droplet radius and optical depth of liquid water clouds using ground-based measurements, aircraft observations and an adiabatic model of cloud liquid water. The algorithm derives cloud effective radius and cloud optical depth over a tropical site at Omkoi (17.80°N, 98.43°E), Thailand. Monthly averages of cloud optical depth are highest in April (54.5), which is the month with the lowest average cloud effective radius (4.2 μm), both occurring before the start of the rainy season and at the end of the high contamination period. By contrast, the monsoon period extending from May to October brings higher cloud effective radius and lower cloud optical depth to the region on average. At the diurnal scale there is a gradual increase in average cloud optical depth and decrease in cloud effective radius as the day progresses.

Effect of Nocturnal Intermittent Peritoneal Dialysis on Intraocular Pressure and Anterior Segment Optical Coherence Tomography Parameters.

PubMed

Chong, Ka Lung; Samsudin, Amir; Keng, Tee Chau; Kamalden, Tengku Ain; Ramli, Norlina

2017-02-01

To evaluate the effect of nocturnal intermittent peritoneal dialysis (NIPD) on intraocular pressure (IOP) and anterior segment optical coherence tomography (ASOCT) parameters. Systemic changes associated with NIPD were also analyzed. Observational study. Nonglaucomatous patients on NIPD underwent systemic and ocular assessment including mean arterial pressure (MAP), body weight, serum osmolarity, visual acuity, IOP measurement, and ASOCT within 2 hours both before and after NIPD. The Zhongshan Angle Assessment Program (ZAAP) was used to measure ASOCT parameters including anterior chamber depth, anterior chamber width, anterior chamber area, anterior chamber volume, lens vault, angle opening distance, trabecular-iris space area, and angle recess area. T tests and Pearson correlation tests were performed with P<0.05 considered statistically significant. A total of 46 eyes from 46 patients were included in the analysis. There were statistically significant reductions in IOP (-1.8±0.6 mm Hg, P=0.003), MAP (-11.9±3.1 mm Hg, P<0.001), body weight (-0.7±2.8 kg, P<0.001), and serum osmolarity (-3.4±2.0 mOsm/L, P=0.002) after NIPD. All the ASOCT parameters did not have any statistically significant changes after NIPD. There were no statistically significant correlations between the changes in IOP, MAP, body weight, and serum osmolarity (all P>0.05). NIPD results in reductions in IOP, MAP, body weight, and serum osmolarity in nonglaucomatous patients.

Light field geometry of a Standard Plenoptic Camera.

PubMed

Hahne, Christopher; Aggoun, Amar; Haxha, Shyqyri; Velisavljevic, Vladan; Fernández, Juan Carlos Jácome

2014-11-03

The Standard Plenoptic Camera (SPC) is an innovation in photography, allowing for acquiring two-dimensional images focused at different depths, from a single exposure. Contrary to conventional cameras, the SPC consists of a micro lens array and a main lens projecting virtual lenses into object space. For the first time, the present research provides an approach to estimate the distance and depth of refocused images extracted from captures obtained by an SPC. Furthermore, estimates for the position and baseline of virtual lenses which correspond to an equivalent camera array are derived. On the basis of paraxial approximation, a ray tracing model employing linear equations has been developed and implemented using Matlab. The optics simulation tool Zemax is utilized for validation purposes. By designing a realistic SPC, experiments demonstrate that a predicted image refocusing distance at 3.5 m deviates by less than 11% from the simulation in Zemax, whereas baseline estimations indicate no significant difference. Applying the proposed methodology will enable an alternative to the traditional depth map acquisition by disparity analysis.

Depth image super-resolution via semi self-taught learning framework

NASA Astrophysics Data System (ADS)

Zhao, Furong; Cao, Zhiguo; Xiao, Yang; Zhang, Xiaodi; Xian, Ke; Li, Ruibo

2017-06-01

Depth images have recently attracted much attention in computer vision and high-quality 3D content for 3DTV and 3D movies. In this paper, we present a new semi self-taught learning application framework for enhancing resolution of depth maps without making use of ancillary color images data at the target resolution, or multiple aligned depth maps. Our framework consists of cascade random forests reaching from coarse to fine results. We learn the surface information and structure transformations both from a small high-quality depth exemplars and the input depth map itself across different scales. Considering that edge plays an important role in depth map quality, we optimize an effective regularized objective that calculates on output image space and input edge space in random forests. Experiments show the effectiveness and superiority of our method against other techniques with or without applying aligned RGB information

Beam shaping to provide round and square-shaped beams in optical systems of high-power lasers

NASA Astrophysics Data System (ADS)

Laskin, Alexander; Laskin, Vadim

2016-05-01

Optical systems of modern high-power lasers require control of irradiance distribution: round or square-shaped flat-top or super-Gaussian irradiance profiles are optimum for amplification in MOPA lasers and for thermal load management while pumping of crystals of solid-state ultra-short pulse lasers to control heat and minimize its impact on the laser power and beam quality while maximizing overall laser efficiency, variable profiles are also important in irradiating of photocathode of Free Electron lasers (FEL). It is suggested to solve the task of irradiance re-distribution using field mapping refractive beam shapers like piShaper. The operational principle of these devices presumes transformation of laser beam intensity from Gaussian to flat-top one with high flatness of output wavefront, saving of beam consistency, providing collimated output beam of low divergence, high transmittance, extended depth of field, negligible residual wave aberration, and achromatic design provides capability to work with ultra-short pulse lasers having broad spectrum. Using the same piShaper device it is possible to realize beams with flat-top, inverse Gauss or super Gauss irradiance distribution by simple variation of input beam diameter, and the beam shape can be round or square with soft edges. This paper will describe some design basics of refractive beam shapers of the field mapping type and optical layouts of their applying in optical systems of high-power lasers. Examples of real implementations and experimental results will be presented as well.

Modelling of influence of spherical aberration coefficients on depth of focus of optical systems

NASA Astrophysics Data System (ADS)

Pokorný, Petr; Šmejkal, Filip; Kulmon, Pavel; Mikš, Antonín.; Novák, Jiří; Novák, Pavel

2017-06-01

This contribution describes how to model the influence of spherical aberration coefficients on the depth of focus of optical systems. Analytical formulas for the calculation of beam's caustics are presented. The conditions for aberration coefficients are derived for two cases when we require that either the Strehl definition or the gyration radius should be the identical in two symmetrically placed planes with respect to the paraxial image plane. One can calculate the maximum depth of focus and the minimum diameter of the circle of confusion of the optical system corresponding to chosen conditions. This contribution helps to understand how spherical aberration may affect the depth of focus and how to design such an optical system with the required depth of focus. One can perform computer modelling and design of the optical system and its spherical aberration in order to achieve the required depth of focus.

An optical fiber expendable seawater temperature/depth profile sensor

NASA Astrophysics Data System (ADS)

Zhao, Qiang; Chen, Shizhe; Zhang, Keke; Yan, Xingkui; Yang, Xianglong; Bai, Xuejiao; Liu, Shixuan

2017-10-01

Marine expendable temperature/depth profiler (XBT) is a disposable measuring instrument which can obtain temperature/depth profile data quickly in large area waters and mainly used for marine surveys, scientific research, military application. The temperature measuring device is a thermistor in the conventional XBT probe (CXBT)and the depth data is only a calculated value by speed and time depth calculation formula which is not an accurate measurement result. Firstly, an optical fiber expendable temperature/depth sensor based on the FBG-LPG cascaded structure is proposed to solve the problems of the CXBT, namely the use of LPG and FBG were used to detect the water temperature and depth, respectively. Secondly, the fiber end reflective mirror is used to simplify optical cascade structure and optimize the system performance. Finally, the optical path is designed and optimized using the reflective optical fiber end mirror. The experimental results show that the sensitivity of temperature and depth sensing based on FBG-LPG cascade structure is about 0.0030C and 0.1%F.S. respectively, which can meet the requirements of the sea water temperature/depth observation. The reflectivity of reflection mirror is in the range from 48.8% to 72.5%, the resonant peak of FBG and LPG are reasonable and the whole spectrum are suitable for demodulation. Through research on the optical fiber XBT (FXBT), the direct measurement of deep-sea temperature/depth profile data can be obtained simultaneously, quickly and accurately. The FXBT is a new all-optical seawater temperature/depth sensor, which has important academic value and broad application prospect and is expected to replace the CXBT in the future.

Optical domain analog to digital conversion methods and apparatus

DOEpatents

Vawter, Gregory A

2014-05-13

Methods and apparatus for optical analog to digital conversion are disclosed. An optical signal is converted by mapping the optical analog signal onto a wavelength modulated optical beam, passing the mapped beam through interferometers to generate analog bit representation signals, and converting the analog bit representation signals into an optical digital signal. A photodiode receives an optical analog signal, a wavelength modulated laser coupled to the photodiode maps the optical analog signal to a wavelength modulated optical beam, interferometers produce an analog bit representation signal from the mapped wavelength modulated optical beam, and sample and threshold circuits corresponding to the interferometers produce a digital bit signal from the analog bit representation signal.

Shallow borehole array for measuring fluxes of reduced trace gases in Greenland as an analogue for volatile emission on Mars

NASA Astrophysics Data System (ADS)

Pratt, L. M.

2011-12-01

Planetary exploration of Mars is rapidly advancing with high-resolution data from orbiting and landed instruments upending the image of a monotonously arid red planet and raising interest in the search for evidence of past or present Martian life. The plausibility of biotic influences on release and sequestration of water and other volatile molecules on Mars remains a highly contentious topic. Despite this uncertainty, treating volatile emissions as potential atmospheric biomarkers is prudent for planetary protection and is critical for refinement of exploration strategies aimed at life detection on Mars. Using deeply eroded Paleoproterozoic bedrock in southwestern Greenland as an analogue for Mars, a team of scientists from Indiana University, Princeton University, Goddard Space Flight Center, the Jet Propulsion Laboratory, and Honey Bee Robotics is participating in a three-year field campaign to analyze seasonal and diurnal variation in concentration and isotopic composition of methane, ethane, and hydrogen sulfide in bedrock boreholes (0.5 to 2 m depth) and soil pipe wells (1 to 1.5 m depth) intersecting permafrost environments across a study site of about 1 km2. Open-path laser spectroscopy (OPLS) will be used from a fixed platform coupled to a roving reflector in order to map out gas emissions from a variety of bedrock and vegetated terrains in periglacial settings. OPLS mapping will be used to target sites for seasonal and diurnal monitoring surface fluxes of reduced gases. Bedrock boreholes will be drilled percussively and soil pipe-wells will be inserted by hand. Each borehole or well will have one fiber optic line and two capillary lines installed by hand through an inert screw-compression seal. The capillary lines will be used to transfer gas into detection instruments at the surface and the fiber optic line will allow transfer of data from temperature and pressure sensors to data loggers. The field campaign will culminate with an integrated drill-packer-optic-capillary system as a technology demonstration of semi-autonomous drilling for planetary exploration. Carbon and hydrogen isotopic compositions for methane and ethane will be determined in the field using Integrated Cavity Output Spectroscopy and Cavity Ring Down Spectroscopy. Continuous permafrost is present at the study site down to 300 m depth with temperatures dropping to -3 degrees C at a depth of about 4 meters, providing a relatively shallow and pristine setting for an instrumented study of reduced trace gases in soil, fractured bedrock, and groundwater constituting the active layer.

Application of simple all-sky imagers for the estimation of aerosol optical depth

NASA Astrophysics Data System (ADS)

Kazantzidis, Andreas; Tzoumanikas, Panagiotis; Nikitidou, Efterpi; Salamalikis, Vasileios; Wilbert, Stefan; Prahl, Christoph

2017-06-01

Aerosol optical depth is a key atmospheric constituent for direct normal irradiance calculations at concentrating solar power plants. However, aerosol optical depth is typically not measured at the solar plants for financial reasons. With the recent introduction of all-sky imagers for the nowcasting of direct normal irradiance at the plants a new instrument is available which can be used for the determination of aerosol optical depth at different wavelengths. In this study, we are based on Red, Green and Blue intensities/radiances and calculations of the saturated area around the Sun, both derived from all-sky images taken with a low-cost surveillance camera at the Plataforma Solar de Almeria, Spain. The aerosol optical depth at 440, 500 and 675nm is calculated. The results are compared with collocated aerosol optical measurements and the mean/median difference and standard deviation are less than 0.01 and 0.03 respectively at all wavelengths.

Effect of Thin Cirrus Clouds on Dust Optical Depth Retrievals From MODIS Observations

NASA Technical Reports Server (NTRS)

Feng, Qian; Hsu, N. Christina; Yang, Ping; Tsay, Si-Chee

2011-01-01

The effect of thin cirrus clouds in retrieving the dust optical depth from MODIS observations is investigated by using a simplified aerosol retrieval algorithm based on the principles of the Deep Blue aerosol property retrieval method. Specifically, the errors of the retrieved dust optical depth due to thin cirrus contamination are quantified through the comparison of two retrievals by assuming dust-only atmospheres and the counterparts with overlapping mineral dust and thin cirrus clouds. To account for the effect of the polarization state of radiation field on radiance simulation, a vector radiative transfer model is used to generate the lookup tables. In the forward radiative transfer simulations involved in generating the lookup tables, the Rayleigh scattering by atmospheric gaseous molecules and the reflection of the surface assumed to be Lambertian are fully taken into account. Additionally, the spheroid model is utilized to account for the nonsphericity of dust particles In computing their optical properties. For simplicity, the single-scattering albedo, scattering phase matrix, and optical depth are specified a priori for thin cirrus clouds assumed to consist of droxtal ice crystals. The present results indicate that the errors in the retrieved dust optical depths due to the contamination of thin cirrus clouds depend on the scattering angle, underlying surface reflectance, and dust optical depth. Under heavy dusty conditions, the absolute errors are comparable to the predescribed optical depths of thin cirrus clouds.

Pinatubo Aerosol Global-to-Micro-Scale Evolution: A Unified Picture From Space, Air, and Ground Measurements

NASA Technical Reports Server (NTRS)

Russell, Philip B.; Livingston, J. M.; Pueschel, R. F.; Pollack, J. B.; Brooks, S.; Hamill, P.; Hughes, J.; Thomason, L.; Stowe, L.; Deshler, T.;

Depth map generation using a single image sensor with phase masks.

PubMed

Jang, Jinbeum; Park, Sangwoo; Jo, Jieun; Paik, Joonki

2016-06-13

Conventional stereo matching systems generate a depth map using two or more digital imaging sensors. It is difficult to use the small camera system because of their high costs and bulky sizes. In order to solve this problem, this paper presents a stereo matching system using a single image sensor with phase masks for the phase difference auto-focusing. A novel pattern of phase mask array is proposed to simultaneously acquire two pairs of stereo images. Furthermore, a noise-invariant depth map is generated from the raw format sensor output. The proposed method consists of four steps to compute the depth map: (i) acquisition of stereo images using the proposed mask array, (ii) variational segmentation using merging criteria to simplify the input image, (iii) disparity map generation using the hierarchical block matching for disparity measurement, and (iv) image matting to fill holes to generate the dense depth map. The proposed system can be used in small digital cameras without additional lenses or sensors.

A Study of Tropical thin Cirrus Clouds with Supervised Learning

NASA Astrophysics Data System (ADS)

Rodier, S. D.; Hu, Y.; Vaughan, M. A.

2007-12-01

ABSTRACT Accurate knowledge of the temporal frequency and spatial extent of optically thin cirrus is crucial to climate feedback analysis. Current global warming theory asserts that when the atmospheric concentration of CO2 increases, the outgoing longwave radiation at non-window wavelengths is reduced. If the Earth's net radiative balance is to remain stable, ground temperatures must rise in response, thereby increasing thermal emission to space. Current models do not account for subsequent changes in cloud cover, because this aspect of the climate feedback system is so poorly understood. One possible response of the cloud-climate feedback process is an increase in the global occurrence of thin cirrus clouds, driven by the increase in longwave cooling in the upper troposphere that results from higher CO2 concentrations. Exacerbating the difficulty of assessing the situation is the fact that passive remote sensing instruments cannot reliably detect cirrus clouds with optical depths less than ~0.3, because these clouds do not reflect enough sunlight to create a sufficient contrast with the Earth's surface. Now, however, the presence of thin cirrus can for the first time be accurately detected and systematically monitored by the combination of active and passive sensors onboard the CALIPSO satellite. Nevertheless, the data record is still quite limited, as CALIPSO has been in orbit for only 16 months. We have therefore initiated a multi-platform data fusion study to establish a methodology for extending the limited set of CALIPSO measurements to the existing 30-year record of passive remote sensing data, and thus improve our understanding of cloud feedback mechanisms. Using nighttime data from the first 10 days in April 2007 as a training set, we applied a general regression neural network (GRNN) to collocated samples of sea surface temperature (SST) reported by AMSR, brightness temperatures (BT) from the CALIPSO imaging infrared radiometer (IIR), and optical depths (OD) derived from the CALIPSO lidar measurements. The result is an accurate mapping of the optical depths derived from the active sensors to the brightness temperatures computed from the passive sensor measurements. Applying the trained network to this combination of passive sensor parameters, optical depths as small as 0.1 can be reliably retrieved. The relative uncertainties in the retrieval are reasonable, and can be improved significantly by use of a much larger training set.

Multi- and hyperspectral remote sensing of tropical marine benthic habitats

NASA Astrophysics Data System (ADS)

Mishra, Deepak R.

Tropical marine benthic habitats such as coral reef and associated environments are severely endangered because of the environmental degradation coupled with hurricanes, El Nino events, coastal pollution and runoff, tourism, and economic development. To monitor and protect this diverse environment it is important to not only develop baseline maps depicting their spatial distribution but also to document their changing conditions over time. Remote sensing offers an important means of delineating and monitoring coral reef ecosystems. Over the last twenty years the scientific community has been investigating the use and potential of remote sensing techniques to determine the conditions of the coral reefs by analyzing their spectral characteristics from space. One of the problems in monitoring coral reefs from space is the effect of the water column on the remotely sensed signal. When light penetrates water its intensity decreases exponentially with increasing depth. This process, known as water column attenuation, exerts a profound effect on remotely sensed data collected over water bodies. The approach presented in this research focuses on the development of semi-analytical models that resolves the confounding influence water column attenuation on substrate reflectance to characterize benthic habitats from high resolution remotely sensed imagery on a per-pixel basis. High spatial resolution satellite and airborne imagery were used as inputs in the models to derive water depth and water column optical properties (e.g., absorption and backscattering coefficients). These parameters were subsequently used in various bio-optical algorithms to deduce bottom albedo and then to classify the benthos, generating a detailed map of benthic habitats. IKONOS and QuickBird multispectral satellite data and AISA Eagle hyperspectral airborne data were used in this research for benthic habitat mapping along the north shore of Roatan Island, Honduras. The AISA Eagle classification was consistently more accurate (84%) including finer definition of geomorphological features than the satellite sensors. IKONOS (81%) and QuickBird (81%) sensors showed similar accuracy to AISA, however, such similarity was only reached at the coarse classification levels of 5 and 6 habitats. These results confirm the potential of an effective combination of high spectral and spatial resolution sensor, for accurate benthic habitat mapping.

The Carina Nebula and Gum 31 molecular complex - II. The distribution of the atomic gas revealed in unprecedented detail

NASA Astrophysics Data System (ADS)

Rebolledo, David; Green, Anne J.; Burton, Michael; Brooks, Kate; Breen, Shari L.; Gaensler, B. M.; Contreras, Yanett; Braiding, Catherine; Purcell, Cormac

2017-12-01

We report high spatial resolution observations of the H I 21cm line in the Carina Nebula and the Gum 31 region obtained with the Australia Telescope Compact Array. The observations covered ∼12 °^2 centred on l = 287.5°, b = -1°, achieving an angular resolution of ∼35 arcsec. The H I map revealed complex filamentary structures across a wide range of velocities. Several 'bubbles' are clearly identified in the Carina Nebula complex, produced by the impact of the massive star clusters located in this region. An H I absorption profile obtained towards the strong extragalactic radio source PMN J1032-5917 showed the distribution of the cold component of the atomic gas along the Galactic disc, with the Sagittarius-Carina and Perseus spiral arms clearly distinguishable. Preliminary calculations of the optical depth and spin temperatures of the cold atomic gas show that the H I line is opaque (τ ≳ 2) at several velocities in the Sagittarius-Carina spiral arm. The spin temperature is ∼100 K in the regions with the highest optical depth, although this value might be lower for the saturated components. The atomic mass budget of Gum 31 is ∼35 per cent of the total gas mass. H I self-absorption features have molecular counterparts and good spatial correlation with the regions of cold dust as traced by the infrared maps. We suggest that in Gum 31 regions of cold temperature and high density are where the atomic to molecular gas-phase transition is likely to be occurring.

Spectrally based mapping of riverbed composition

USGS Publications Warehouse

Legleiter, Carl; Stegman, Tobin K.; Overstreet, Brandon T.

2016-01-01

Remote sensing methods provide an efficient means of characterizing fluvial systems. This study evaluated the potential to map riverbed composition based on in situ and/or remote measurements of reflectance. Field spectra and substrate photos from the Snake River, Wyoming, USA, were used to identify different sediment facies and degrees of algal development and to quantify their optical characteristics. We hypothesized that accounting for the effects of depth and water column attenuation to isolate the reflectance of the streambed would enhance distinctions among bottom types and facilitate substrate classification. A bottom reflectance retrieval algorithm adapted from coastal research yielded realistic spectra for the 450 to 700 nm range; but bottom reflectance-based substrate classifications, generated using a random forest technique, were no more accurate than classifications derived from above-water field spectra. Additional hypothesis testing indicated that a combination of reflectance magnitude (brightness) and indices of spectral shape provided the most accurate riverbed classifications. Convolving field spectra to the response functions of a multispectral satellite and a hyperspectral imaging system did not reduce classification accuracies, implying that high spectral resolution was not essential. Supervised classifications of algal density produced from hyperspectral data and an inferred bottom reflectance image were not highly accurate, but unsupervised classification of the bottom reflectance image revealed distinct spectrally based clusters, suggesting that such an image could provide additional river information. We attribute the failure of bottom reflectance retrieval to yield more reliable substrate maps to a latent correlation between depth and bottom type. Accounting for the effects of depth might have eliminated a key distinction among substrates and thus reduced discriminatory power. Although further, more systematic study across a broader range of fluvial environments is needed to substantiate our initial results, this case study suggests that bed composition in shallow, clear-flowing rivers potentially could be mapped remotely.

Assessing suitability of multispectral satellites for mapping benthic macroalgal cover in turbid coastal waters by means of model simulations

NASA Astrophysics Data System (ADS)

Kutser, Tiit; Vahtmäe, Ele; Martin, Georg

2006-04-01

One of the objectives of monitoring benthic algal cover is to observe short- and long-term changes in species distribution and structure of coastal benthic habitats as indicators of ecological state. Mapping benthic algal cover with conventional methods (diving) provides great accuracy and high resolution, yet is very expensive and is limited by the time and manpower necessary. We measured reflectance spectra of three indicator species for the Baltic Sea: Cladophora glomerata (green macroalgae), Furcellaria lumbricalis (red macroalgae), and Fucus vesiculosus (brown macroalgae) and used a bio-optical model in an attempt to estimate whether these algae are separable from each other and sandy bottom or deep water by means of satellite remote sensing. Our modelling results indicate that to some extent it is possible to map the studied species with multispectral satellite sensors in turbid waters. However, the depths where the macroalgae can be detected are often shallower than the maximum depths where the studied species usually grow. In waters deeper than just a few meters, the differences between the studied bottom types are seen only in band 2 (green) of the multispectral sensors under investigation. It means that multispectral sensors are capable of detecting difference in brightness only in one band which is insufficient for recognition of different bottom types in waters where no or few in situ data are available. Configuration of MERIS spectral bands allows the recognition of red, green and brown macroalgae based on their spectral signatures provided the algal belts are wider than MERIS spatial resolution. Commercial stock of F. lumbricalis in West-Estonian Archipelago covers area where MERIS 300 m spatial resolution is adequate. However, strong attenuation of light in the water column and signal to noise ratio of the sensor do not allow mapping of Furcellaria down to maximum depths where it occurs.

Improvement of crystal identification performance for a four-layer DOI detector composed of crystals segmented by laser processing

NASA Astrophysics Data System (ADS)

Mohammadi, Akram; Inadama, Naoko; Yoshida, Eiji; Nishikido, Fumihiko; Shimizu, Keiji; Yamaya, Taiga

2017-09-01

We have developed a four-layer depth of interaction (DOI) detector with single-side photon readout, in which segmented crystals with the patterned reflector insertion are separately identified by the Anger-type calculation. Optical conditions between segmented crystals, where there is no reflector, affect crystal identification ability. Our objective of this work was to improve crystal identification performance of the four-layer DOI detector that uses crystals segmented with a recently developed laser processing technique to include laser processed boundaries (LPBs). The detector consisted of 2 × 2 × 4mm3 LYSO crystals and a 4 × 4 array multianode photomultiplier tube (PMT) with 4.5 mm anode pitch. The 2D position map of the detector was calculated by the Anger calculation method. At first, influence of optical condition on crystal identification was evaluated for a one-layer detector consisting of a 2 × 2 crystal array with three different optical conditions between the crystals: crystals stuck together using room temperature vulcanized (RTV) rubber, crystals with air coupling and segmented crystals with LPBs. The crystal array with LPBs gave the shortest distance between crystal responses in the 2D position map compared with the crystal array coupled with RTV rubber or air due to the great amount of cross-talk between segmented crystals with LPBs. These results were used to find optical conditions offering the optimum distance between crystal responses in the 2D position map for the four-layer DOI detector. Crystal identification performance for the four-layer DOI detector consisting of an 8 × 8 array of crystals segmented with LPBs was examined and it was not acceptable for the crystals in the first layer. The crystal identification was improved for the first layer by changing the optical conditions between all 2 × 2 crystal arrays of the first layer to RTV coupling. More improvement was observed by combining different optical conditions between all crystals of the first layer and some crystals of the second and the third layers of the segmented array.

Mapping tissue oxygen in vivo by photoacoustic lifetime imaging

NASA Astrophysics Data System (ADS)

Shao, Qi; Morgounova, Ekaterina; Choi, Jeung-Hwan; Jiang, Chunlan; Bischof, John; Ashkenazi, Shai

2013-03-01

Oxygen plays a key role in the energy metabolism of living organisms. Any imbalance in the oxygen levels will affect the metabolic homeostasis and lead to pathophysiological diseases. Hypoxia, a status of low tissue oxygen, is a key factor in tumor biology as it is highly prominent in tumor tissues. However, clinical tools for assessing tissue oxygenation are limited. The gold standard is polarographic needle electrode which is invasive and not capable of mapping (imaging) the oxygen content in tissue. We applied the method of photoacoustic lifetime imaging (PALI) of oxygen-sensitive dye to small animal tissue hypoxia research. PALI is new technology for direct, non-invasive imaging of oxygen. The technique is based on mapping the oxygen-dependent transient optical absorption of Methylene Blue (MB) by pump-probe photoacoustic imaging. Our studies show the feasibility of imaging of dissolved oxygen distribution in phantoms. In vivo experiments demonstrate that the hypoxia region is consistent with the site of subcutaneously xenografted prostate tumor in mice with adequate spatial resolution and penetration depth.

The Christiansen Effect in Saturn's narrow dusty rings and the spectral identification of clumps in the F ring

USGS Publications Warehouse

Hedman, M.M.; Nicholson, P.D.; Showalter, M.R.; Brown, R.H.; Buratti, B.J.; Clark, R.N.; Baines, K.; Sotin, Christophe

2011-01-01

Stellar occultations by Saturn's rings observed with the Visual and Infrared Mapping Spectrometer (VIMS) onboard the Cassini spacecraft reveal that dusty features such as the F ring and the ringlets in the Encke and the Laplace Gaps have distinctive infrared transmission spectra. These spectra show a narrow optical depth minimum at wavelengths around 2.87??m. This minimum is likely due to the Christiansen Effect, a reduction in the extinction of small particles when their (complex) refractive index is close to that of the surrounding medium. Simple Mie-scattering models demonstrate that the strength of this opacity dip is sensitive to the size distribution of particles between 1 and 100??m across. Furthermore, the spatial resolution of the occultation data is sufficient to reveal variations in the transmission spectra within and among these rings. In both the Encke Gap ringlets and F ring, the opacity dip weakens with increasing local optical depth, which is consistent with the larger particles being concentrated near the cores of these rings. The Encke Gap ringlets also show systematically weaker opacity dips than the F ring and Laplace Gap ringlet, implying that the former has a smaller fraction of grains less than ~30??m across. However, the strength of the opacity dip varies most dramatically within the F ring; certain compact regions of enhanced optical depth lack an opacity dip and therefore appear to have a greatly reduced fraction of grains in the few-micron size range. Such spectrally-identifiable structures probably represent a subset of the compact optically-thick clumps observed by other Cassini instruments. These variations in the ring's particle size distribution can provide new insights into the processes of grain aggregation, disruption and transport within dusty rings. For example, the unusual spectral properties of the F-ring clumps could perhaps be ascribed to small grains adhering onto the surface of larger particles in regions of anomalously low velocity dispersion. ?? 2011 Elsevier Inc.

Depth-resolved birefringence and differential optical axis orientation measurements with fiber-based polarization-sensitive optical coherence tomography.

PubMed

Guo, Shuguang; Zhang, Jun; Wang, Lei; Nelson, J Stuart; Chen, Zhongping

2004-09-01

Conventional polarization-sensitive optical coherence tomography (PS-OCT) can provide depth-resolved Stokes parameter measurements of light reflected from turbid media. A new algorithm that takes into account changes in the optical axis is introduced to provide depth-resolved birefringence and differential optical axis orientation images by use of fiber-based PS-OCT. Quaternion, a convenient mathematical tool, is used to represent an optical element and simplify the algorithm. Experimental results with beef tendon and rabbit tendon and muscle show that this technique has promising potential for imaging the birefringent structure of multiple-layer samples with varying optical axes.

Precipitable water vapor and 212 GHz atmospheric optical depth correlation at El Leoncito site

NASA Astrophysics Data System (ADS)

Cassiano, Marta M.; Cornejo Espinoza, Deysi; Raulin, Jean-Pierre; Giménez de Castro, Carlos G.

2018-03-01

Time series of precipitable water vapor (PWV) and 212 GHz atmospheric optical depth were obtained in CASLEO (Complejo Astronómico El Leoncito), at El Leoncito site, Argentinean Andes, for the period of 2011-2013. The 212 GHz atmospheric optical depth data were derived from measurements by the Solar Submillimeter Telescope (SST) and the PWV data were obtained by the AERONET CASLEO station. The correlation between PWV and 212 GHz optical depth was analyzed for the whole period, when both parameters were simultaneously available. A very significant correlation was observed. Similar correlation was found when data were analyzed year by year. The results indicate that the correlation of PWV versus 212 GHz optical depth could be used as an indirect estimation method for PWV, when direct measurements are not available.

Quantifying the Variation in Shear Zone Character with Depth: a Case Study from the Simplon Shear Zone, Central Alps

NASA Astrophysics Data System (ADS)

Cawood, T. K.; Platt, J. P.

2017-12-01

A widely-accepted model for the rheology of crustal-scale shear zones states that they comprise distributed strain at depth, in wide, high-temperature shear zones, which narrow to more localized, high-strain zones at lower temperature and shallower crustal levels. We test and quantify this model by investigating how the width, stress, temperature and deformation mechanisms change with depth in the Simplon Shear Zone (SSZ). The SSZ marks a major tectonic boundary in the central Alps, where normal-sense motion and rapid exhumation of the footwall have preserved evidence of older, deeper deformation in rocks progressively further into the currently-exposed footwall. As such, microstructures further from the brittle fault (which represents the most localized, most recently-active part of the SSZ) represent earlier, higher- temperature deformation from deeper crustal levels, while rocks closer to the fault have been overprinted by successively later, cooler deformation at shallower depths. This study uses field mapping and microstructural studies to identify zones representing deformation at various crustal levels, and characterize each in terms of zone width (representing width of the shear zone at that time and depth) and dominant deformation mechanism. In addition, quartz- (by Electron Backscatter Diffraction, EBSD) and feldspar grain size (measured optically) piezometry are used to calculate the flow stress for each zone, while the Ti-in-quartz thermometer (TitaniQ) is used to calculate the corresponding temperature of deformation. We document the presence of a broad zone in which quartz is recrystallized by the Grain Boundary Migration (GBM) mechanism and feldspar by Subgrain Rotation (SGR), which represents the broad, deep zone of deformation occurring at relatively high temperatures and low stresses. In map view, this transitions to successively narrower zones, respectively characterized by quartz SGR and feldspar Bulge Nucleation (BLG); quartz BLG and brittle deformation of feldspar; and finally, a zone of generally brittle deformation. These zones represent deformation in progressively narrower regions at shallower depths, under lower temperatures and higher stresses.

Enhanced optical clearing of skin in vivo and optical coherence tomography in-depth imaging

NASA Astrophysics Data System (ADS)

Wen, Xiang; Jacques, Steven L.; Tuchin, Valery V.; Zhu, Dan

2012-06-01

The strong optical scattering of skin tissue makes it very difficult for optical coherence tomography (OCT) to achieve deep imaging in skin. Significant optical clearing of in vivo rat skin sites was achieved within 15 min by topical application of an optical clearing agent PEG-400, a chemical enhancer (thiazone or propanediol), and physical massage. Only when all three components were applied together could a 15 min treatment achieve a three fold increase in the OCT reflectance from a 300 μm depth and 31% enhancement in image depth Zthreshold.

Predefined Redundant Dictionary for Effective Depth Maps Representation

NASA Astrophysics Data System (ADS)

Sebai, Dorsaf; Chaieb, Faten; Ghorbel, Faouzi

2016-01-01

The multi-view video plus depth (MVD) video format consists of two components: texture and depth map, where a combination of these components enables a receiver to generate arbitrary virtual views. However, MVD presents a very voluminous video format that requires a compression process for storage and especially for transmission. Conventional codecs are perfectly efficient for texture images compression but not for intrinsic depth maps properties. Depth images indeed are characterized by areas of smoothly varying grey levels separated by sharp discontinuities at the position of object boundaries. Preserving these characteristics is important to enable high quality view synthesis at the receiver side. In this paper, sparse representation of depth maps is discussed. It is shown that a significant gain in sparsity is achieved when particular mixed dictionaries are used for approximating these types of images with greedy selection strategies. Experiments are conducted to confirm the effectiveness at producing sparse representations, and competitiveness, with respect to candidate state-of-art dictionaries. Finally, the resulting method is shown to be effective for depth maps compression and represents an advantage over the ongoing 3D high efficiency video coding compression standard, particularly at medium and high bitrates.

Development of a Cone Penetrometer for Measuring Spectral Characteristics of Soils in Situ

NASA Technical Reports Server (NTRS)

Lee, Landris T., Jr.; Malone, Philip G.

1993-01-01

A patent was recently granted to the U.S. Army for an adaptation of a soil cone penetrometer that can be used to measure the spectral characteristics (fluorescence or reflectance) of soils adjacent to the penetrometer rod. The system can use a variety of light sources and spectral analytical equipment. A laser induced fluorescence measuring system has proven to be of immediate use in mapping the distribution of oil contaminated soil at waste disposal and oil storage areas. The fiber optic adaptation coupled with a cone penetrometer permits optical characteristics of the in-situ soil to be measured rapidly, safely, and inexpensively. The fiber optic cone penetrometer can be used to gather spectral data to a depth of approximately 25 to 30 m even in dense sands or stiff clays and can investigate 300 m of soil per day. Typical detection limits for oil contamination in sand is on the order of several hundred parts per million.

Lyman-alpha observations of Comet West /1975n/

NASA Technical Reports Server (NTRS)

Opal, C. B.; Carruthers, G. R.

1977-01-01

The rate of hydrogen production of Comet West is studied through rocket observation of solar Lyman-alpha radiation resonantly scattered by the escaping hydrogen atoms. Two sets of Lyman-alpha exposure sequences are used to obtain computer-smoothed brightness contour (isophote) maps covering a density range of 100:1. A simple radial outflow model is applied to the contour maps to determine the rate of hydrogen production (3.2 by 10 to the 30th power atoms/sec.) Discrepancies between the observed shape of the outer isophotes and predicted models may be explained by optical depth effects, or by the presence of small pieces of the comet's nucleus distributed along the orbit. Hydrogen, carbon, and oxygen production for Comet West and Comet Kohoutek are compared; differences may be accounted for by variations in the composition or evolution of the two comets.

Structure-aware depth super-resolution using Gaussian mixture model

NASA Astrophysics Data System (ADS)

Kim, Sunok; Oh, Changjae; Kim, Youngjung; Sohn, Kwanghoon

2015-03-01

This paper presents a probabilistic optimization approach to enhance the resolution of a depth map. Conventionally, a high-resolution color image is considered as a cue for depth super-resolution under the assumption that the pixels with similar color likely belong to similar depth. This assumption might induce a texture transferring from the color image into the depth map and an edge blurring artifact to the depth boundaries. In order to alleviate these problems, we propose an efficient depth prior exploiting a Gaussian mixture model in which an estimated depth map is considered to a feature for computing affinity between two pixels. Furthermore, a fixed-point iteration scheme is adopted to address the non-linearity of a constraint derived from the proposed prior. The experimental results show that the proposed method outperforms state-of-the-art methods both quantitatively and qualitatively.

Variable angle-of-incidence polarization-sensitive optical coherence tomography: its use to study the 3D collagen structure of equine articular cartilage

NASA Astrophysics Data System (ADS)

Ugryumova, Nadya; Gangnus, Sergei V.; Matcher, Stephen J.

2006-02-01

Polarization-sensitive optical coherence tomography has been used to spatially map the birefringence of equine articular cartilage. The polar orientation of the collagen fibers relative to the plane of the joint surface must be taken into account if a quantitative measurement of true birefringence is required. Using a series of images taken at different angles of illumination, we determine the fiber polar angle and true birefringence at one site on a sample of equine cartilage, on the assumption that the fibers lie within the plane of imaging. We propose a more general method based on the extended Jones matrix formalism to determine both the polar and azimuthal orientation of the collagen fibers as well as the true birefringence as functions of depth.

Evaluating Mars Science Laboratory Landing Sites with the Mars Global Reference Atmospheric Model (Mars-GRAM 2005)

NASA Technical Reports Server (NTRS)

Justh, H. L.; Justus, C. G.

2008-01-01

The Mars Global Reference Atmospheric Model (Mars-GRAM) is an engineering-level atmospheric model widely used for diverse mission applications. Mars-GRAM s perturbation modeling capability is commonly used, in a Monte-Carlo mode, to perform high fidelity engineering end-to-end simulations for entry, descent, and landing (EDL) [1]. From the surface to 80 km altitude, Mars-GRAM is based on the NASA Ames Mars General Circulation Model (MGCM). Mars-GRAM and MGCM use surface topography from Mars Global Surveyor Mars Orbiter Laser Altimeter (MOLA), with altitudes referenced to the MOLA areoid, or constant potential surface. Traditional Mars-GRAM options for representing the mean atmosphere along entry corridors include: (1) Thermal Emission Spectrometer (TES) mapping years 1 and 2, with Mars-GRAM data coming from NASA Ames Mars General Circulation Model (MGCM) results driven by observed TES dust optical depth or (2) TES mapping year 0, with user-controlled dust optical depth and Mars-GRAM data interpolated from MGCM model results driven by selected values of globally-uniform dust optical depth. Mars-GRAM 2005 has been validated [2] against Radio Science data, and both nadir and limb data from TES [3]. There are several new features included in Mars-GRAM 2005. The first is the option to use input data sets from MGCM model runs that were designed to closely simulate conditions observed during the first two years of TES observations at Mars. The TES Year 1 option includes values from April 1999 through January 2001. The TES Year 2 option includes values from February 2001 through December 2002. The second new feature is the option to read and use any auxiliary profile of temperature and density versus altitude. In exercising the auxiliary profile Mars-GRAM option, values from the auxiliary profile replace data from the original MGCM databases. Some examples of auxiliary profiles include data from TES nadir or limb observations and Mars mesoscale model output at a particular location and time. The final new feature is the addition of two Mars-GRAM parameters that allow standard deviations of Mars-GRAM perturbations to be adjusted. The parameter rpscale can be used to scale density perturbations up or down while rwscale can be used to scale wind perturbations.

Development of Extended-Depth Swept Source Optical Coherence Tomography for Applications in Ophthalmic Imaging of the Anterior and Posterior Eye

NASA Astrophysics Data System (ADS)

Dhalla, Al-Hafeez Zahir

Optical coherence tomography (OCT) is a non-invasive optical imaging modality that provides micron-scale resolution of tissue micro-structure over depth ranges of several millimeters. This imaging technique has had a profound effect on the field of ophthalmology, wherein it has become the standard of care for the diagnosis of many retinal pathologies. Applications of OCT in the anterior eye, as well as for imaging of coronary arteries and the gastro-intestinal tract, have also shown promise, but have not yet achieved widespread clinical use. The usable imaging depth of OCT systems is most often limited by one of three factors: optical attenuation, inherent imaging range, or depth-of-focus. The first of these, optical attenuation, stems from the limitation that OCT only detects singly-scattered light. Thus, beyond a certain penetration depth into turbid media, essentially all of the incident light will have been multiply scattered, and can no longer be used for OCT imaging. For many applications (especially retinal imaging), optical attenuation is the most restrictive of the three imaging depth limitations. However, for some applications, especially anterior segment, cardiovascular (catheter-based) and GI (endoscopic) imaging, the usable imaging depth is often not limited by optical attenuation, but rather by the inherent imaging depth of the OCT systems. This inherent imaging depth, which is specific to only Fourier Domain OCT, arises due to two factors: sensitivity fall-off and the complex conjugate ambiguity. Finally, due to the trade-off between lateral resolution and axial depth-of-focus inherent in diffractive optical systems, additional depth limitations sometimes arises in either high lateral resolution or extended depth OCT imaging systems. The depth-of-focus limitation is most apparent in applications such as adaptive optics (AO-) OCT imaging of the retina, and extended depth imaging of the ocular anterior segment. In this dissertation, techniques for extending the imaging range of OCT systems are developed. These techniques include the use of a high spectral purity swept source laser in a full-field OCT system, as well as the use of a peculiar phenomenon known as coherence revival to resolve the complex conjugate ambiguity in swept source OCT. In addition, a technique for extending the depth of focus of OCT systems by using a polarization-encoded, dual-focus sample arm is demonstrated. Along the way, other related advances are also presented, including the development of techniques to reduce crosstalk and speckle artifacts in full-field OCT, and the use of fast optical switches to increase the imaging speed of certain low-duty cycle swept source OCT systems. Finally, the clinical utility of these techniques is demonstrated by combining them to demonstrate high-speed, high resolution, extended-depth imaging of both the anterior and posterior eye simultaneously and in vivo.

MAPPING THE DYNAMICS OF COLD GAS AROUND SGR A* THROUGH 21 cm ABSORPTION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Christian, Pierre; Loeb, Abraham, E-mail: pchristian@cfa.harvard.edu

2015-11-20

The presence of a circumnuclear stellar disk around Sgr A* and megamaser systems near other black holes indicates that dense neutral disks can be found in galactic nuclei. We show that depending on their inclination angle, optical depth, and spin temperature, these disks could be observed spectroscopically through 21 cm absorption. Related spectroscopic observations of Sgr A* can determine its HI disk parameters and the possible presence of gaps in the disk. Clumps of dense gas similar to the G2 could could also be detected in 21 cm absorption against Sgr A* radio emission.

The evolution of Titan's mid-latitude clouds

USGS Publications Warehouse

Griffith, C.A.; Penteado, P.; Baines, K.; Drossart, P.; Barnes, J.; Bellucci, G.; Bibring, J.; Brown, R.; Buratti, B.; Capaccioni, F.; Cerroni, P.; Clark, R.; Combes, M.; Coradini, A.; Cruikshank, D.; Formisano, V.; Jaumann, R.; Langevin, Y.; Matson, D.; McCord, T.; Mennella, V.; Nelson, R.; Nicholson, P.; Sicardy, B.; Sotin, Christophe; Soderblom, L.A.; Kursinski, R.

2005-01-01

Spectra from Cassini's Visual and Infrared Mapping Spectrometer reveal that the horizontal structure, height, and optical depth of Titan's clouds are highly, dynamic. Vigorous cloud centers are seen to rise from the middle to the upper troposphere within 30 minutes and dissipate within the next hour. Their development indicates that Titan's clouds evolve convectively; dissipate through rain; and, over the next several hours, waft downwind to achieve their great longitude extents. These and other characteristics suggest that temperate clouds originate from circulation-induced convergence, in addition to a forcing at the surface associated with Saturn's tides, geology, and/or surface composition.

Image processing for optical mapping.

PubMed

Ravindran, Prabu; Gupta, Aditya

2015-01-01

Optical Mapping is an established single-molecule, whole-genome analysis system, which has been used to gain a comprehensive understanding of genomic structure and to study structural variation of complex genomes. A critical component of Optical Mapping system is the image processing module, which extracts single molecule restriction maps from image datasets of immobilized, restriction digested and fluorescently stained large DNA molecules. In this review, we describe robust and efficient image processing techniques to process these massive datasets and extract accurate restriction maps in the presence of noise, ambiguity and confounding artifacts. We also highlight a few applications of the Optical Mapping system.

Coupled retrieval of water cloud and above-cloud aerosol properties using the Airborne Multiangle SpectroPolarimetric Imager (AirMSPI)

NASA Astrophysics Data System (ADS)

Xu, F.; van Harten, G.; Diner, D. J.; Rheingans, B. E.; Tosca, M.; Seidel, F. C.; Bull, M. A.; Tkatcheva, I. N.; McDuffie, J. L.; Garay, M. J.; Davis, A. B.; Jovanovic, V. M.; Brian, C.; Alexandrov, M. D.; Hostetler, C. A.; Ferrare, R. A.; Burton, S. P.

2017-12-01

The Airborne Multiangle SpectroPolarimetric Imager (AirMSPI) has been flying aboard the NASA ER-2 high altitude aircraft since October 2010. AirMSPI acquires radiance and polarization data in bands centered at 355, 380, 445, 470*, 555, 660*, 865*, and 935 nm (*denotes polarimetric bands). In sweep mode, georectified images cover an area of 80-100 km (along track) by 10-25 km (across track) between ±66° off nadir, with a map-projected spatial resolution of 25 meters. An efficient and flexible retrieval algorithm has been developed using AirMSPI polarimetric bands for simultaneous retrieval of cloud and above-cloud aerosol microphysical properties. We design a three-step retrieval approach, namely 1) estimating effective droplet size distribution using polarimetric cloudbow observations and using it as initial guess for Step 2; 2) combining water cloud and aerosol above cloud retrieval by fitting polarimetric signals at all scattering angles (e.g. from 80° to 180°); and 3) constructing a lookup table of radiance for a set of cloud optical depth grids using aerosol and cloud information retrieved from Step 2 and then estimating pixel-scale cloud optical depth based on 1D radiative transfer (RT) theory by fitting the AirMSPI radiance. Retrieval uncertainty is formulated by accounting for instrumental errors and constraints imposed on spectral variations of aerosol and cloud droplet optical properties. As the forward RT model, a hybrid approach is developed to combine the computational strengths of Markov-chain and adding-doubling methods to model polarized RT in a coupled aerosol, Rayleigh and cloud system. Our retrieval approach is tested using 134 AirMSPI datasets acquired during NASA ORACLES field campaign in 09/2016, with low to high aerosol loadings. For validation, the retrieved aerosol optical depths and cloud-top heights are compared to coincident High Spectral Resolution Lidar-2 (HSRL-2) data, and the droplet size parameters including effective radius and effective variance and cloud optical thickness are compared to coincident Research Scanning Polarimeter (RSP) data.

Temporal variations in atmospheric water vapor and aerosol optical depth determined by remote sensing

NASA Technical Reports Server (NTRS)

Pitts, D. E.; Mcallum, W. E.; Heidt, M.; Jeske, K.; Lee, J. T.; Demonbrun, D.; Morgan, A.; Potter, J.

1977-01-01

By automatically tracking the sun, a four-channel solar radiometer was used to continuously measure optical depth and atmospheric water vapor. The design of this simple autotracking solar radiometer is presented. A technique for calculating the precipitable water from the ratio of a water band to a nearby nonabsorbing band is discussed. Studies of the temporal variability of precipitable water and atmospheric optical depth at 0.610, 0.8730 and 1.04 microns are presented. There was good correlation between the optical depth measured using the autotracker and visibility determined from National Weather Service Station data. However, much more temporal structure was evident in the autotracker data than in the visibility data. Cirrus clouds caused large changes in optical depth over short time periods. They appear to be the largest deleterious atmospheric effect over agricultural areas that are remote from urban pollution sources.

Cloud Optical Depth Measured with Ground-Based, Uncooled Infrared Imagers

NASA Technical Reports Server (NTRS)

Shaw, Joseph A.; Nugent, Paul W.; Pust, Nathan J.; Redman, Brian J.; Piazzolla, Sabino

2012-01-01

Recent advances in uncooled, low-cost, long-wave infrared imagers provide excellent opportunities for remotely deployed ground-based remote sensing systems. However, the use of these imagers in demanding atmospheric sensing applications requires that careful attention be paid to characterizing and calibrating the system. We have developed and are using several versions of the ground-based "Infrared Cloud Imager (ICI)" instrument to measure spatial and temporal statistics of clouds and cloud optical depth or attenuation for both climate research and Earth-space optical communications path characterization. In this paper we summarize the ICI instruments and calibration methodology, then show ICI-derived cloud optical depths that are validated using a dual-polarization cloud lidar system for thin clouds (optical depth of approximately 4 or less).

Retinal Structure of Birds of Prey Revealed by Ultra-High Resolution Spectral-Domain Optical Coherence Tomography

PubMed Central

Ruggeri, Marco; Major, James C.; McKeown, Craig; Knighton, Robert W.; Puliafito, Carmen A.

2010-01-01

Purpose. To reveal three-dimensional (3-D) information about the retinal structures of birds of prey in vivo. Methods. An ultra-high resolution spectral-domain optical coherence tomography (SD-OCT) system was built for in vivo imaging of retinas of birds of prey. The calibrated imaging depth and axial resolution of the system were 3.1 mm and 2.8 μm (in tissue), respectively. 3-D segmentation was performed for calculation of the retinal nerve fiber layer (RNFL) map. Results. High-resolution OCT images were obtained of the retinas of four species of birds of prey: two diurnal hawks (Buteo platypterus and Buteo brachyurus) and two nocturnal owls (Bubo virginianus and Strix varia). These images showed the detailed retinal anatomy, including the retinal layers and the structure of the deep and shallow foveae. The calculated thickness map showed the RNFL distribution. Traumatic injury to one bird's retina was also successfully imaged. Conclusions. Ultra-high resolution SD-OCT provides unprecedented high-quality 2-D and 3-D in vivo visualization of the retinal structures of birds of prey. SD-OCT is a powerful imaging tool for vision research in birds of prey. PMID:20554605

In-vivo assessment of microvascular functional dynamics by combination of cmOCT and wavelet transform

NASA Astrophysics Data System (ADS)

Smirni, Salvatore; MacDonald, Michael P.; Robertson, Catherine P.; McNamara, Paul M.; O'Gorman, Sean; Leahy, Martin J.; Khan, Faisel

2018-02-01

The cutaneous microcirculation represents an index of the health status of the cardiovascular system. Conventional methods to evaluate skin microvascular function are based on measuring blood flow by laser Doppler in combination with reactive tests such as post-occlusive reactive hyperaemia (PORH). Moreover, the spectral analysis of blood flow signals by continuous wavelet transform (CWT) reveals nonlinear oscillations reflecting the functionality of microvascular biological factors, e.g. endothelial cells (ECs). Correlation mapping optical coherence tomography (cmOCT) has been previously described as an efficient methodology for the morphological visualisation of cutaneous micro-vessels. Here, we show that cmOCT flow maps can also provide information on the functional components of the microcirculation. A spectral domain optical coherence tomography (SD-OCT) imaging system was used to acquire 90 sequential 3D OCT volumes from the forearm of a volunteer, while challenging the micro-vessels with a PORH test. The volumes were sampled in a temporal window of 25 minutes, and were processed by cmOCT to obtain flow maps at different tissue depths. The images clearly show changes of flow in response to the applied stimulus. Furthermore, a blood flow signal was reconstructed from cmOCT maps intensities to investigate the microvascular nonlinear dynamics by CWT. The analysis revealed oscillations changing in response to PORH, associated with the activity of ECs and the sympathetic innervation. The results demonstrate that cmOCT may be potentially used as diagnostic tool for the assessment of microvascular function, with the advantage of also providing spatial resolution and structural information compared to the traditional laser Doppler techniques.

A Verification of Aerosol Optical Depth Retrieval Using the Terra Satellite

DTIC Science & Technology

2012-06-01

of the signal which can be used to calculate total optical depth (from Vincent 2006).............................................................5... signals isolates the direct transmission component of the signal which can be used to calculate total optical depth (from Vincent 2006). 6 2...fully backscattered condition to fully forward scattered, respectively. Values fro the single scatter albedo and the asymmetry parameter can be

Combined 60° Wide-Field Choroidal Thickness Maps and High-Definition En Face Vasculature Visualization Using Swept-Source Megahertz OCT at 1050 nm

PubMed Central

Mohler, Kathrin J.; Draxinger, Wolfgang; Klein, Thomas; Kolb, Jan Philip; Wieser, Wolfgang; Haritoglou, Christos; Kampik, Anselm; Fujimoto, James G.; Neubauer, Aljoscha S.; Huber, Robert; Wolf, Armin

2015-01-01

Purpose To demonstrate ultrahigh-speed swept-source optical coherence tomography (SS-OCT) at 1.68 million A-scans/s for choroidal imaging in normal and diseased eyes over a ∼60° field of view. To investigate and correlate wide-field three-dimensional (3D) choroidal thickness (ChT) and vascular patterns using ChT maps and coregistered high-definition en face images extracted from a single densely sampled Megahertz-OCT (MHz-OCT) dataset. Methods High-definition, ∼60° wide-field 3D datasets consisting of 2088 × 1024 A-scans were acquired using a 1.68 MHz prototype SS-OCT system at 1050 nm based on a Fourier-domain mode-locked laser. Nine subjects (nine eyes) with various chorioretinal diseases or without ocular pathology are presented. Coregistered ChT maps, choroidal summation maps, and depth-resolved en face images referenced to either the retinal pigment epithelium or the choroidal–scleral interface were generated using manual segmentation. Results Wide-field ChT maps showed a large inter- and intraindividual variance in peripheral and central ChT. In only four of the nine eyes, the location with the largest ChT was coincident with the fovea. The anatomy of the large lumen vessels of the outer choroid seems to play a major role in determining the global ChT pattern. Focal ChT changes with large thickness gradients were observed in some eyes. Conclusions Different ChT and vascular patterns could be visualized over ∼60° in patients for the first time using OCT. Due to focal ChT changes, a high density of thickness measurements may be favorable. High-definition depth-resolved en face images are complementary to cross sections and thickness maps and enhance the interpretation of different ChT patterns. PMID:26431482

Combined 60° Wide-Field Choroidal Thickness Maps and High-Definition En Face Vasculature Visualization Using Swept-Source Megahertz OCT at 1050 nm.

PubMed

Mohler, Kathrin J; Draxinger, Wolfgang; Klein, Thomas; Kolb, Jan Philip; Wieser, Wolfgang; Haritoglou, Christos; Kampik, Anselm; Fujimoto, James G; Neubauer, Aljoscha S; Huber, Robert; Wolf, Armin

2015-10-01

To demonstrate ultrahigh-speed swept-source optical coherence tomography (SS-OCT) at 1.68 million A-scans/s for choroidal imaging in normal and diseased eyes over a ∼60° field of view. To investigate and correlate wide-field three-dimensional (3D) choroidal thickness (ChT) and vascular patterns using ChT maps and coregistered high-definition en face images extracted from a single densely sampled Megahertz-OCT (MHz-OCT) dataset. High-definition, ∼60° wide-field 3D datasets consisting of 2088 × 1024 A-scans were acquired using a 1.68 MHz prototype SS-OCT system at 1050 nm based on a Fourier-domain mode-locked laser. Nine subjects (nine eyes) with various chorioretinal diseases or without ocular pathology are presented. Coregistered ChT maps, choroidal summation maps, and depth-resolved en face images referenced to either the retinal pigment epithelium or the choroidal-scleral interface were generated using manual segmentation. Wide-field ChT maps showed a large inter- and intraindividual variance in peripheral and central ChT. In only four of the nine eyes, the location with the largest ChT was coincident with the fovea. The anatomy of the large lumen vessels of the outer choroid seems to play a major role in determining the global ChT pattern. Focal ChT changes with large thickness gradients were observed in some eyes. Different ChT and vascular patterns could be visualized over ∼60° in patients for the first time using OCT. Due to focal ChT changes, a high density of thickness measurements may be favorable. High-definition depth-resolved en face images are complementary to cross sections and thickness maps and enhance the interpretation of different ChT patterns.

Design of Optical Systems with Extended Depth of Field: An Educational Approach to Wavefront Coding Techniques

ERIC Educational Resources Information Center

Ferran, C.; Bosch, S.; Carnicer, A.

2012-01-01

A practical activity designed to introduce wavefront coding techniques as a method to extend the depth of field in optical systems is presented. The activity is suitable for advanced undergraduate students since it combines different topics in optical engineering such as optical system design, aberration theory, Fourier optics, and digital image…

Research of detection depth for graphene-based optical sensor

NASA Astrophysics Data System (ADS)

Yang, Yong; Sun, Jialve; Liu, Lu; Zhu, Siwei; Yuan, Xiaocong

2018-03-01

Graphene-based optical sensors have been developed for research into the biological intercellular refractive index (RI) because they offer greater detection depths than those provided by the surface plasmon resonance technique. In this Letter, we propose an experimental approach for measurement of the detection depth in a graphene-based optical sensor system that uses transparent polydimethylsiloxane layers with different thicknesses. The experimental results show that detection depths of 2.5 μm and 3 μm can be achieved at wavelengths of 532 nm and 633 nm, respectively. These results prove that graphene-based optical sensors can realize long-range RI detection and are thus promising for use as tools in the biological cell detection field. Additionally, we analyze the factors that influence the detection depth and provide a feasible approach for detection depth control based on adjustment of the wavelength and the angle of incidence. We believe that this approach will be useful in RI tomography applications.

High Spectral Resolution Lidar Data

DOE Data Explorer

Eloranta, Ed

2004-12-01

The HSRL provided calibrated vertical profiles of optical depth, backscatter cross section and depoloarization at a wavelength of 532 nm. Profiles were acquired at 2.5 second intervals with 7.5 meter resolution. Profiles extended from an altitude of 100 m to 30 km in clear air. The lidar penetrated to a maximum optical depth of ~ 4 under cloudy conditions. Our data contributed directly to the aims of the M-PACE experiment, providing calibrated optical depth and optical backscatter measurements which were not available from any other instrument.

Role of optics in the accuracy of depth-from-defocus systems: comment.

PubMed

Blendowske, Ralf

2007-10-01

In their paper "Role of optics in the accuracy of depth-from-defocus systems" [J. Opt. Soc. Am. A24, 967 (2007)] the authors Blayvas, Kimmel, and Rivlin discuss the effect of optics on the depth reconstruction accuracy. To this end they applied an approach in Fourier space. An alternative derivation of their result in the spatial domain, based on geometrical optics, is presented and compared with their outcome. A better agreement with experimental data is achieved if some unclarities are refined.

Ultrafast Phase Mapping of Thin-Sections from An Apollo 16 Drive Tube - a New Visualisation of Lunar Regolith

NASA Technical Reports Server (NTRS)

Botha, Pieter; Butcher, Alan R.; Horsch, Hana; Rickman, Doug; Wentworth, Susan J.; Schrader, Christian M.; Stoeser, Doug; Benedictus, Aukje; Gottlieb, Paul; McKay, David

2008-01-01

Polished thin-sections of samples extracted from Apollo drive tubes provide unique insights into the structure of the Moon's regolith at various landing sites. In particular, they allow the mineralogy and texture of the regolith to be studied as a function of depth. Much has been written about such thin-sections based on optical, SEM and EPMA studies, in terms of their essential petrographic features, but there has been little attempt to quantify these aspects from a spatial perspective. In this study, we report the findings of experimental analysis of two thin-sections (64002, 6019, depth range 5.0 - 8.0 cm & 64001, 6031, depth range 50.0 - 53.1 cm), from a single Apollo 16 drive tube using QEMSCAN . A key feature of the method is phase identification by ultrafast energy dispersive x-ray mapping on a pixel-by-pixel basis. By selecting pixel resolutions ranging from 1 - 5 microns, typically 8,500,000 individual measurement points can be collected on a thin-section. The results we present include false colour digital images of both thin-sections. From these images, information such as phase proportions (major, minor and trace phases), particle textures, packing densities, and particle geometries, has been quantified. Parameters such as porosity and average phase density, which are of geomechanical interest, can also be calculated automatically. This study is part of an on-going investigation into spatial variation of lunar regolith and NASA's ISRU Lunar Simulant Development Project.

In-depth evolution of chemical states and sub-10-nm-resolution crystal orientation mapping of nanograins in Ti(5 nm)/Au(20 nm)/Cr(3 nm) tri-layer thin films

NASA Astrophysics Data System (ADS)

Zhu, Xiaoli; Todeschini, Matteo; Bastos da Silva Fanta, Alice; Liu, Lintao; Jensen, Flemming; Hübner, Jörg; Jansen, Henri; Han, Anpan; Shi, Peixiong; Ming, Anjie; Xie, Changqing

2018-09-01

The applications of Au thin films and their adhesion layers often suffer from a lack of sufficient information about the chemical states of adhesion layers and about the high-lateral-resolution crystallographic morphology of Au nanograins. Here, we demonstrate the in-depth evolution of the chemical states of adhesive layers at the interfaces and the crystal orientation mapping of gold nanograins with a lateral resolution of less than 10 nm in a Ti/Au/Cr tri-layer thin film system. Using transmission electron microscopy, the variation in the interdiffusion at Cr/Au and Ti/Au interfaces was confirmed. From X-ray photoelectron spectroscopy (XPS) depth profiling, the chemical states of Cr, Au and Ti were characterized layer by layer, suggesting the insufficient oxidation of the adhesive layers. At the interfaces the Au 4f peaks shift to higher binding energies and this behavior can be described by a proposed model based on electron reorganization and substrate-induced final-state neutralization in small Au clusters supported by the partially oxidized Ti layer. Utilizing transmission Kikuchi diffraction (TKD) in a scanning electron microscope, the crystal orientation of Au nanograins between two adhesion layers was non-destructively characterized with sub-10 nm spatial resolution. The results provide nanoscale insights into the Ti/Au/Cr thin film system and contribute to our understanding of its behavior in nano-optic and nano-electronic devices.

Aerosol Optical Depth Retrievals From High-Resolution Commercial Satellite Imagery Over Areas of High Surface Reflectance

NASA Astrophysics Data System (ADS)

Vincent, D. A.; Nielsen, K. E.; Durkee, P. A.; Reid, J. S.

2005-12-01

The advancement and proliferation of high-resolution commercial imaging satellites presents a new opportunity for overland aerosol characterization. Current aerosol optical depth retrieval methods typically fail over areas with high surface reflectance, such as urban areas and deserts, since the upwelling radiance due to scattering by aerosols is small compared to the radiance resulting from surface reflection. The method proposed here uses shadows cast on the surface to exploit the differences between radiance from the adjacent shaded and unshaded areas of the scene. Shaded areas of the scene are primarily illuminated by diffuse irradiance that is scattered downward from the atmosphere, while unshaded areas are illuminated by both diffuse and direct solar irradiance. The first-order difference between the shaded and unshaded areas is the direct component. Given uniform surface reflectance for the shaded and unshaded areas, the difference in reflected radiance measured by a satellite sensor is related to the direct transmission of solar radiation and inversely proportional to total optical depth. Using an iterative approach, surface reflectance and mean aerosol reflectance can be partitioned to refine the retrieved total optical depth. Aerosol optical depth can then be determined from its contribution to the total atmospheric optical depth (following correction for molecular Rayleigh scattering). Intitial results based on QuickBird imagery and AERONET data collected during the United Arab Emirates Unified Aerosol Experiment (UAE2) indicate that aerosol optical depth retrievals are possible in the visible and near-infrared region with an accuracy of ~0.04.

A quantitative analysis of IRAS maps of molecular clouds

NASA Technical Reports Server (NTRS)

Wiseman, Jennifer J.; Adams, Fred C.

1994-01-01

We present an analysis of IRAS maps of five molecular clouds: Orion, Ophiuchus, Perseus, Taurus, and Lupus. For the classification and description of these astrophysical maps, we use a newly developed technique which considers all maps of a given type to be elements of a pseudometric space. For each physical characteristic of interest, this formal system assigns a distance function (a pseudometric) to the space of all maps: this procedure allows us to measure quantitatively the difference between any two maps and to order the space of all maps. We thus obtain a quantitative classification scheme for molecular clouds. In this present study we use the IRAS continuum maps at 100 and 60 micrometer(s) to produce column density (or optical depth) maps for the five molecular cloud regions given above. For this sample of clouds, we compute the 'output' functions which measure the distribution of density, the distribution of topological components, the self-gravity, and the filamentary nature of the clouds. The results of this work provide a quantitative description of the structure in these molecular cloud regions. We then order the clouds according to the overall environmental 'complexity' of these star-forming regions. Finally, we compare our results with the observed populations of young stellar objects in these clouds and discuss the possible environmental effects on the star-formation process. Our results are consistent with the recently stated conjecture that more massive stars tend to form in more 'complex' environments.

Line-scan spectrum-encoded imaging by dual-comb interferometry.

PubMed

Wang, Chao; Deng, Zejiang; Gu, Chenglin; Liu, Yang; Luo, Daping; Zhu, Zhiwei; Li, Wenxue; Zeng, Heping

2018-04-01

Herein, the method of spectrum-encoded dual-comb interferometry is introduced to measure a three-dimensional (3-D) profile with absolute distance information. By combining spectral encoding for wavelength-to-space mapping, dual-comb interferometry for decoding and optical reference for calibration, this system can obtain a 3-D profile of an object at a stand-off distance of 114 mm with a depth precision of 12 μm. With the help of the reference arm, the absolute distance, reflectivity distribution, and depth information are simultaneously measured at a 5 kHz line-scan rate with free-running carrier-envelope offset frequencies. To verify the concept, experiments are conducted with multiple objects, including a resolution test chart, a three-stair structure, and a designed "ECNU" letter chain. The results show a horizontal resolution of ∼22  μm and a measurement range of 1.93 mm.

Shear Wave Velocity, Depth to Bedrock, and Fundamental Resonance Applied to Bedrock Mapping using MASW and H/V Analysis

NASA Astrophysics Data System (ADS)

Gonsiewski, J.

2015-12-01

Mapping bedrock depth is useful for earthquake hazard analysis, subsurface water transport, and other applications. Recently, collaborative experimentation provided an opportunity to explore a mapping method. Near surface glacial till shear wave velocity (Vs) where data is available from an array of 3-component seismometers were studied for this experiment. Vs is related to depth to bedrock (h) and fundamental resonance (Fo); Fo = Vs/(4h). The H/V spectral peak frequency of recordings from a 3-component seismometer yields a fundamental resonance estimate. Where a suitable average Vs is established, the depth to bedrock can be calculated at every seismometer. 3-component seismometer data was provided by Spectraseis. Geophones, seismographs, and an extra 3-component seismometer were provided by Wright State University for this study. For Vs analysis, three MASW surveys were conducted near the seismometer array. SurfSeis3© was used for processing MASW data. Overtones from complicated bedrock structure and great bedrock depth are improved by combining overtones from multiple source offsets from each survey. From MASW Vs and depth to bedrock results, theoretical fundamental resonance (Fo) was calculated and compared with the H/V peak spectral frequency measured by a seismometer at selected sites and processed by Geopsy processing software. Calculated bedrock depths from all geophysical data were compared with measured bedrock depths at nearby water wells and oil and gas wells provided by ODNR. Vs and depth to bedrock results from MASW produced similar calculated fundamental resonances to the H/V approximations by respective seismometers. Bedrock mapping was performed upon verifying the correlation between the theoretical fundamental resonance and H/V peak frequencies. Contour maps were generated using ArcGIS®. Contour lines interpolated from local wells were compared with the depths calculated from H/V analysis. Bedrock depths calculated from the seismometer array correlate with the major trends indicated by the surrounding wells. A final contour map was developed from depth to bedrock measured by all wells and depths calculated from the average Vs and estimated resonance at select Spectraseis 3-component seismometers.

Remote Marine Aerosol: A Characterization of Physical, Chemical and Optical Properties and their Relation to Radiative Transfer in the Troposphere

NASA Technical Reports Server (NTRS)

Clarke, Antony D.; Porter, John N.

1997-01-01

Our research effort is focused on improving our understanding of aerosol properties needed for optical models for remote marine regions. This includes in-situ and vertical column optical closure and involves a redundancy of approaches to measure and model optical properties that must be self consistent. The model is based upon measured in-situ aerosol properties and will be tested and constrained by the vertically measured spectral differential optical depth of the marine boundary layer, MBL. Both measured and modeled column optical properties for the boundary layer, when added to the free-troposphere and stratospheric optical depth, will be used to establish spectral optical depth over the entire atmospheric column for comparison to and validation of satellite derived radiances (AVHRR).

Optical mapping and its potential for large-scale sequencing projects.

PubMed

Aston, C; Mishra, B; Schwartz, D C

1999-07-01

Physical mapping has been rediscovered as an important component of large-scale sequencing projects. Restriction maps provide landmark sequences at defined intervals, and high-resolution restriction maps can be assembled from ensembles of single molecules by optical means. Such optical maps can be constructed from both large-insert clones and genomic DNA, and are used as a scaffold for accurately aligning sequence contigs generated by shotgun sequencing.

Geochemical mapping in polluted floodplains using handheld XRF, geophysical imaging, and geostatistics

NASA Astrophysics Data System (ADS)

Hošek, Michal; Matys Grygar, Tomáš; Popelka, Jan; Kiss, Timea; Elznicová, Jitka; Faměra, Martin

2017-04-01

In the recent years researchers have enjoyed noticeable improvements of portable analytical and geophysical methods, which allow studying floodplain architecture and deciphering pollutant distribution more easily than ever before. Our area of interest was floodplain of the Ploučnice River, particularly a pollution hotspot in Boreček, severely impacted by U mining between the 1970s and late 1980s, in particular a "radioactive flood" in 1981. In the area, we used hand drill coring and in situ (field) analysis of so acquired sediments by handheld X-ray fluorescence spectrometer (XRF), which gave us information about depth profiles of pollutants (Ba, U, Zn) and the Al/Si and Zr/Rb ratios, i.e., proxies for sediment lithology. We found that spatial distribution of pollutants (control by depth and position in the floodplain) is apparently complex and discontinuous. In some places, contamination is buried by a couple decimetres of less polluted sediments, while in other places the peak pollution is near surface, apparently without a straightforward connection with the surface topography and the distance to the river channel. We thus examined the floodplain architecture, the internal structure of the floodplain using two geophysical methods. First of them, dipole electromagnetic profiling (DEMP, also denoted EMP, MP, or Slingram) quickly acquires average electric resistivity in top strata in selected areas, which was actually top 3 m with our particular instrument. Second, electric resistivity tomography (ERT) produces much more detailed information on resistivity with depth resolution of ca 0.5 m to the depth of ca 5 m in selected lines. ERT thus allows identifying boundaries of electric resistivity domains (sediment bodies) and DEMP their spatial distribution. Based on the obtained data, we divided the floodplain to five segments with specific topography, pollution characteristics, and electric resistivity. We suppose that those segments are lithogenetic floodplain units. Those findings must, however, be checked by sediment examination and analysis in selected points. We processed the crucial characteristics obtained by geochemical mapping, namely depth of maximum pollution, amount of contamination, and lithology (Al/Si and Zr/Rb ratios), using geostatistics. Moreover, some parts of floodplain were dated by optically stimulated luminescence (OSL) which revealed, that recycling of top decimetres of floodplain fine fill (silts) in Boreček site has proceeded relatively recently (in decades and centuries) as compared to deeper lying coarser (sandy) strata (millennia). The results of geochemical mapping show complexity of pollution hotspots and need of their integrated interpretation. Key words: Dipole electromagneting profilling, electric resistivity tomography, floodplain contamination, geochemical mapping

The Next Generation of Mars-GRAM and Its Role in the Autonomous Aerobraking Development Plan

NASA Technical Reports Server (NTRS)

Justh, Hilary L.; Justus, Carl G.; Ramey, Holly S.

2011-01-01

The Mars Global Reference Atmospheric Model (Mars-GRAM) is an engineering-level atmospheric model widely used for diverse mission applications. Mars-GRAM 2010 is currently being used to develop the onboard atmospheric density estimator that is part of the Autonomous Aerobraking Development Plan. In previous versions, Mars-GRAM was less than realistic when used for sensitivity studies for Thermal Emission Spectrometer (TES) MapYear=0 and large optical depth values, such as tau=3. A comparison analysis has been completed between Mars-GRAM, TES and data from the Planetary Data System (PDS) resulting in updated coefficients for the functions relating density, latitude, and longitude of the sun. The adjustment factors are expressed as a function of height (z), Latitude (Lat) and areocentric solar longitude (Ls). The latest release of Mars-GRAM 2010 includes these adjustment factors that alter the in-put data from MGCM and MTGCM for the Mapping Year 0 (user-controlled dust) case. The greatest adjustment occurs at large optical depths such as tau greater than 1. The addition of the adjustment factors has led to better correspondence to TES Limb data from 0-60 km as well as better agreement with MGS, ODY and MRO data at approximately 90-135 km. Improved simulations utilizing Mars-GRAM 2010 are vital to developing the onboard atmospheric density estimator for the Autonomous Aerobraking Development Plan. Mars-GRAM 2010 was not the only planetary GRAM utilized during phase 1 of this plan; Titan-GRAM and Venus-GRAM were used to generate density data sets for Aerobraking Design Reference Missions. These data sets included altitude profiles (both vertical and along a trajectory), GRAM perturbations (tides, gravity waves, etc.) and provided density and scale height values for analysis by other Autonomous Aero-braking team members.

Ground-penetrating radar--A tool for mapping reservoirs and lakes

USGS Publications Warehouse

Truman, C.C.; Asmussen, L.E.; Allison, H.D.

1991-01-01

Ground-penetrating radar was evaluated as a tool for mapping reservoir and lake bottoms and providing stage-storage information. An impulse radar was used on a 1.4-ha (3.5-acre) reservoir with 31 transects located 6.1 m (20 feet) apart. Depth of water and lateral extent of the lake bottom were accurately measured by ground-penetrating radar. A linear (positive) relationship existed between measured water depth and ground-penetrating radar-determined water depth (R2=0.989). Ground-penetrating radar data were used to create a contour map of the lake bottom. Relationships between water (contour) elevation and water surface area and volume were established. Ground-penetrating radar proved to be a useful tool for mapping lakes, detecting lake bottom variations, locating old stream channels, and determining water depths. The technology provides accurate, continuous profile data in a relatively short time compared to traditional surveying and depth-sounding techniques.

Laser beam shaping for biomedical microscopy techniques

NASA Astrophysics Data System (ADS)

Laskin, Alexander; Kaiser, Peter; Laskin, Vadim; Ostrun, Aleksei

2016-04-01

Uniform illumination of a working field is very important in optical systems of confocal microscopy and various implementations of fluorescence microscopy like TIR, SSIM, STORM, PALM to enhance performance of these laser-based research techniques. Widely used TEM00 laser sources are characterized by essentially non-uniform Gaussian intensity profile which leads usually to non-uniform intensity distribution in a microscope working field or in a field of microlenses array of a confocal microscope optical system, this non-uniform illumination results in instability of measuring procedure and reducing precision of quantitative measurements. Therefore transformation of typical Gaussian distribution of a TEM00 laser to flat-top (top hat) profile is an actual technical task, it is solved by applying beam shaping optics. Due to high demands to optical image quality the mentioned techniques have specific requirements to a uniform laser beam: flatness of phase front and extended depth of field, - from this point of view the microscopy techniques are similar to holography and interferometry. There are different refractive and diffractive beam shaping approaches used in laser industrial and scientific applications, but only few of them are capable to fulfil the optimum conditions for beam quality required in discussed microscopy techniques. We suggest applying refractive field mapping beam shapers πShaper, which operational principle presumes almost lossless transformation of Gaussian to flat-top beam with flatness of output wavefront, conserving of beam consistency, providing collimated low divergent output beam, high transmittance, extended depth of field, negligible wave aberration, and achromatic design provides capability to work with several lasers with different wavelengths simultaneously. The main function of a beam shaper is transformation of laser intensity profile, further beam transformation to provide optimum for a particular technique spot size and shape has to be realized by an imaging optical system which can include microscope objectives and tube lenses. This paper will describe design basics of refractive beam shapers and optical layouts of their applying in microscopy systems. Examples of real implementations and experimental results will be presented as well.

3-D rigid body tracking using vision and depth sensors.

PubMed

Gedik, O Serdar; Alatan, A Aydn

2013-10-01

In robotics and augmented reality applications, model-based 3-D tracking of rigid objects is generally required. With the help of accurate pose estimates, it is required to increase reliability and decrease jitter in total. Among many solutions of pose estimation in the literature, pure vision-based 3-D trackers require either manual initializations or offline training stages. On the other hand, trackers relying on pure depth sensors are not suitable for AR applications. An automated 3-D tracking algorithm, which is based on fusion of vision and depth sensors via extended Kalman filter, is proposed in this paper. A novel measurement-tracking scheme, which is based on estimation of optical flow using intensity and shape index map data of 3-D point cloud, increases 2-D, as well as 3-D, tracking performance significantly. The proposed method requires neither manual initialization of pose nor offline training, while enabling highly accurate 3-D tracking. The accuracy of the proposed method is tested against a number of conventional techniques, and a superior performance is clearly observed in terms of both objectively via error metrics and subjectively for the rendered scenes.

Optical changes in cortical tissue during seizure activity using optical coherence tomography (Conference Presentation)

NASA Astrophysics Data System (ADS)

Ornelas, Danielle; Hasan, Md.; Gonzalez, Oscar; Krishnan, Giri; Szu, Jenny I.; Myers, Timothy; Hirota, Koji; Bazhenov, Maxim; Binder, Devin K.; Park, Boris H.

2017-02-01

Epilepsy is a chronic neurological disorder characterized by recurrent and unpredictable seizures. Electrophysiology has remained the gold standard of neural activity detection but its resolution and high susceptibility to noise and motion artifact limit its efficiency. Optical imaging techniques, including fMRI, intrinsic optical imaging, and diffuse optical imaging, have also been used to detect neural activity yet these techniques rely on the indirect measurement of changes in blood flow. A more direct optical imaging technique is optical coherence tomography (OCT), a label-free, high resolution, and minimally invasive imaging technique that can produce depth-resolved cross-sectional and 3D images. In this study, OCT was used to detect non-vascular depth-dependent optical changes in cortical tissue during 4-aminopyridine (4-AP) induced seizure onset. Calculations of localized optical attenuation coefficient (µ) allow for the assessment of depth-resolved volumetric optical changes in seizure induced cortical tissue. By utilizing the depth-dependency of the attenuation coefficient, we demonstrate the ability to locate and remove the optical effects of vasculature within the upper regions of the cortex on the attenuation calculations of cortical tissue in vivo. The results of this study reveal a significant depth-dependent decrease in attenuation coefficient of nonvascular cortical tissue both ex vivo and in vivo. Regions exhibiting decreased attenuation coefficient show significant temporal correlation to regions of increased electrical activity during seizure onset and progression. This study allows for a more thorough and biologically relevant analysis of the optical signature of seizure activity in vivo using OCT.

An optimization method of VON mapping for energy efficiency and routing in elastic optical networks

NASA Astrophysics Data System (ADS)

Liu, Huanlin; Xiong, Cuilian; Chen, Yong; Li, Changping; Chen, Derun

2018-03-01

To improve resources utilization efficiency, network virtualization in elastic optical networks has been developed by sharing the same physical network for difference users and applications. In the process of virtual nodes mapping, longer paths between physical nodes will consume more spectrum resources and energy. To address the problem, we propose a virtual optical network mapping algorithm called genetic multi-objective optimize virtual optical network mapping algorithm (GM-OVONM-AL), which jointly optimizes the energy consumption and spectrum resources consumption in the process of virtual optical network mapping. Firstly, a vector function is proposed to balance the energy consumption and spectrum resources by optimizing population classification and crowding distance sorting. Then, an adaptive crossover operator based on hierarchical comparison is proposed to improve search ability and convergence speed. In addition, the principle of the survival of the fittest is introduced to select better individual according to the relationship of domination rank. Compared with the spectrum consecutiveness-opaque virtual optical network mapping-algorithm and baseline-opaque virtual optical network mapping algorithm, simulation results show the proposed GM-OVONM-AL can achieve the lowest bandwidth blocking probability and save the energy consumption.

Albedo of an irradiated plane-parallel atmosphere with finite optical depth

NASA Astrophysics Data System (ADS)

Fukue, Jun

2018-03-01

We analytically derive albedo for a plane-parallel atmosphere with finite optical depth, irradiated by an external source, under the local thermodynamic equilibrium approximation. Albedo is expressed as a function of the photon destruction probability ɛ and optical depth τ, with several parameters such as dilution factors of the external source. In the particular case of the infinite optical depth, albedo A is expressed as A=[1 + (1-W_J/W_H)√{3ɛ}/3]/(1+√{3ɛ}), where WJ and WH are the dilution factors for the mean intensity and Eddington flux, respectively. An example of a model atmosphere is also presented under a gray approximation.

A Single Molecule Scaffold for the Maize Genome

PubMed Central

Zhou, Shiguo; Wei, Fusheng; Nguyen, John; Bechner, Mike; Potamousis, Konstantinos; Goldstein, Steve; Pape, Louise; Mehan, Michael R.; Churas, Chris; Pasternak, Shiran; Forrest, Dan K.; Wise, Roger; Ware, Doreen; Wing, Rod A.; Waterman, Michael S.; Livny, Miron; Schwartz, David C.

2009-01-01

About 85% of the maize genome consists of highly repetitive sequences that are interspersed by low-copy, gene-coding sequences. The maize community has dealt with this genomic complexity by the construction of an integrated genetic and physical map (iMap), but this resource alone was not sufficient for ensuring the quality of the current sequence build. For this purpose, we constructed a genome-wide, high-resolution optical map of the maize inbred line B73 genome containing >91,000 restriction sites (averaging 1 site/∼23 kb) accrued from mapping genomic DNA molecules. Our optical map comprises 66 contigs, averaging 31.88 Mb in size and spanning 91.5% (2,103.93 Mb/∼2,300 Mb) of the maize genome. A new algorithm was created that considered both optical map and unfinished BAC sequence data for placing 60/66 (2,032.42 Mb) optical map contigs onto the maize iMap. The alignment of optical maps against numerous data sources yielded comprehensive results that proved revealing and productive. For example, gaps were uncovered and characterized within the iMap, the FPC (fingerprinted contigs) map, and the chromosome-wide pseudomolecules. Such alignments also suggested amended placements of FPC contigs on the maize genetic map and proactively guided the assembly of chromosome-wide pseudomolecules, especially within complex genomic regions. Lastly, we think that the full integration of B73 optical maps with the maize iMap would greatly facilitate maize sequence finishing efforts that would make it a valuable reference for comparative studies among cereals, or other maize inbred lines and cultivars. PMID:19936062

Tomographic phase microscopy and its biological applications

NASA Astrophysics Data System (ADS)

Choi, Wonshik

2012-12-01

Conventional interferometric microscopy techniques such as digital holographic microscopy and quantitative phase microscopy are often classified as 3D imaging techniques because a recorded complex field image can be numerically propagated to a different depth. In a strict sense, however, a single complex field image contains only 2D information on a specimen. The measured 2D image is only a subset of the 3D structure. For the 3D mapping of an object, multiple independent 2D images are to be taken, for example at multiple incident angles or wavelengths, and then combined by the so-called optical diffraction tomography (ODT). In this Letter, tomographic phase microscopy (TPM) is reviewed that experimentally realizes the concept of the ODT for the 3D mapping of biological cells in their native state, and some of its interesting biological and biomedical applications are introduced. [Figure not available: see fulltext.

Lidar Ratios for Dust Aerosols Derived From Retrievals of CALIPSO Visible Extinction Profiles Constrained by Optical Depths from MODIS-Aqua and CALIPSO/CloudSat Ocean Surface Reflectance Measurements

NASA Technical Reports Server (NTRS)

Young, Stuart A.; Josset, Damien B.; Vaughan, Mark A.

2010-01-01

CALIPSO's (Cloud Aerosol Lidar Infrared Pathfinder Satellite Observations) analysis algorithms generally require the use of tabulated values of the lidar ratio in order to retrieve aerosol extinction and optical depth from measured profiles of attenuated backscatter. However, for any given time or location, the lidar ratio for a given aerosol type can differ from the tabulated value. To gain some insight as to the extent of the variability, we here calculate the lidar ratio for dust aerosols using aerosol optical depth constraints from two sources. Daytime measurements are constrained using Level 2, Collection 5, 550-nm aerosol optical depth measurements made over the ocean by the MODIS (Moderate Resolution Imaging Spectroradiometer) on board the Aqua satellite, which flies in formation with CALIPSO. We also retrieve lidar ratios from night-time profiles constrained by aerosol column optical depths obtained by analysis of CALIPSO and CloudSat backscatter signals from the ocean surface.

A dual-modal magnetic nanoparticle probe for preoperative and intraoperative mapping of sentinel lymph nodes by magnetic resonance and near infrared fluorescence imaging

PubMed Central

Zhou, Zhengyang; Chen, Hongwei; Lipowska, Malgorzata; Wang, Liya; Yu, Qiqi; Yang, Xiaofeng; Tiwari, Diana; Yang, Lily; Mao, Hui

2016-01-01

The ability to reliably detect sentinel lymph nodes for sentinel lymph node biopsy and lymphadenectomy is important in clinical management of patients with metastatic cancers. However, the traditional sentinel lymph node mapping with visible dyes is limited by the penetration depth of light and fast clearance of the dyes. On the other hand, sentinel lymph node mapping with radionucleotide technique has intrinsically low spatial resolution and does not provide anatomic details in the sentinel lymph node mapping procedure. This work reports the development of a dual modality imaging probe with magnetic resonance and near infrared imaging capabilities for sentinel lymph node mapping using magnetic iron oxide nanoparticles (10 nm core size) conjugated with a near infrared molecule with emission at 830 nm. Accumulation of magnetic iron oxide nanoparticles in sentinel lymph nodes leads to strong T2 weighted magnetic resonance imaging contrast that can be potentially used for preoperative localization of sentinel lymph nodes, while conjugated near infrared molecules provide optical imaging tracking of lymph nodes with a high signal to background ratio. The new magnetic nanoparticle based dual imaging probe exhibits a significant longer lymph node retention time. Near infrared signals from nanoparticle conjugated near infrared dyes last up to 60 min in sentinel lymph node compared to that of 25 min for the free near infrared dyes in a mouse model. Furthermore, axillary lymph nodes, in addition to sentinel lymph nodes, can be also visualized with this probe, given its slow clearance and sufficient sensitivity. Therefore, this new dual modality imaging probe with the tissue penetration and sensitive detection of sentinel lymph nodes can be applied for preoperative survey of lymph nodes with magnetic resonance imaging and allows intraoperative sentinel lymph node mapping using near infrared optical devices. PMID:23812946

Aerosol optical depths over the Atlantic derived from shipboard sunphotometer observations during the 1988 Global Change Expedition

NASA Astrophysics Data System (ADS)

Reddy, Patrick J.; Kreiner, Fred W.; Deluisi, John J.; Kim, Young

1990-09-01

Aerosol optical depths and values for the Angstrom exponent, alpha, were retrieved from carefully calibrated sunphotometer measurements which were made during the Global Change Expedition (GCE) of the NOAA ship Mt. Mitchell in July, August, and September 1988. Sunphotometer observations were acquired at wavelengths of 380, 500, 675, and 778 nm. Optical depths and alphas have been segregated into five categories associated with probable air mass source regions determined through back trajectories at the 1000-, 850-, 700-, and 500-mbar levels. The results for the three most distinct air mass types are summarized here. The mean 500- nm aerosol optical depth for North American air is 0.56 (±0.32), the mean for Atlantic air is 0.16 (±0.02), and the mean for Saharan air is 0.39 (±0.12). Alpha for mean GCE aerosol optical depth data for predominantly North American air masses is 1.15 (± 0.11), alpha for Atlantic air is 1.00 (±0.40), and for Saharan air, alpha is 0.37 (±0.18). There is a significant difference between alpha for Saharan air and alpha for North American or Atlantic air. There is also a significant difference between the mean 500-nm optical depth for North American aerosols and Atlantic aerosols.

Delineating Floodplain in North Korea using Remote Sensing and Geographic Information System

NASA Astrophysics Data System (ADS)

Lim, J.; Lee, K. S.

2015-12-01

Korea has been divided into two countries after World War II. So environmental studies about North Korean are not easy and very limited. There were several flood damages every summer in North Korea since 1995, which induces lots of economic loss and agricultural production decrease. Delineating floodplain is indispensable to estimate the magnitude of flood damage and restore the flooded paddy field after unification. Remote Sensing (RS) can provide opportunity to study inaccessible area. In addition, flooding detection is possible. Several research groups study about flooding disaster using RS. Optical images and microwave images have been used in that field. Also, Digital topographic data have been used for flooding detection. Therefore, the purpose of this study is to investigate the land characteristics of floodplain by delineating floodplain in inaccessible North Korea using Landsat and digital topographic data. Landsat TM 5 images were used in this study. North Korea had severe flooding disaster since 1995. Among them 1995, 2007 and 2012 flooding are known for serious damages. Two Landsat images before and after flooding of each year were used to delineate floodplain. Study areas are Pyongyang City, Nampo City, North and South Hwanghae Province and South Pyongan Province. Floodplain are derived from overlaid classification image and flood-depth map. 1:25,000 scale digital topographic data were used to make flood-depth map. For land cover classification image enhancement and supervised classification with maximum likelihood classifier were used. Training areas were selected by visual interpretation using Daum-map which provides high resolution image of whole North Korea. The spatial characteristics of the floodplain were discussed based on floodplain map delineated in this study.

Comparison of the optical depth of total ozone and atmospheric aerosols in Poprad-Gánovce, Slovakia

NASA Astrophysics Data System (ADS)

Hrabčák, Peter

2018-06-01

The amount of ultraviolet solar radiation reaching the Earth's surface is significantly affected by atmospheric ozone along with aerosols. The present paper is focused on a comparison of the total ozone and atmospheric aerosol optical depth in the area of Poprad-Gánovce, which is situated at the altitude of 706 m a. s. l. in the vicinity of the highest mountain in the Carpathian mountains. The direct solar ultraviolet radiation has been measured here continuously since August 1993 using a Brewer MKIV ozone spectrophotometer. These measurements have been used to calculate the total amount of atmospheric ozone and, subsequently, its optical depth. They have also been used to determine the atmospheric aerosol optical depth (AOD) using the Langley plot method. Results obtained by this method were verified by means of comparison with a method that is part of the Brewer operating software, as well as with measurements made by a Cimel sun photometer. Diffuse radiation, the stray-light effect and polarization corrections were applied to calculate the AOD using the Langley plot method. In this paper, two factors that substantially attenuate the flow of direct ultraviolet solar radiation to the Earth's surface are compared. The paper presents results for 23 years of measurements, namely from 1994 to 2016. Values of optical depth were determined for the wavelengths of 306.3, 310, 313.5, 316.8 and 320 nm. A statistically significant decrease in the total optical depth of the atmosphere was observed with all examined wavelengths. Its root cause is the statistically significant decline in the optical depth of aerosols.

Imaging of the stroke-related changes in the vascular system of the mouse brain with the use of extended focus optical coherence microscopy

NASA Astrophysics Data System (ADS)

Tamborski, Szymon; Lyu, Hong Chou; Bukowska, Danuta; Dolezyczek, Hubert; Wilczynski, Grzegorz; Szlag, Daniel; Lasser, Theo; Wojtkowski, Maciej; Szkulmowski, Maciej

2016-03-01

We used Optical Coherence Microscopy (OCM) to monitor structural and functional changes due to ischemic stroke in small animals brains in vivo. To obtain lateral resolution of 2.2 μm over the range of 600 μm we used extended focus configuration of OCM instrument involving Bessel beam. It provided access to detailed 3D information about the changes in brain vascular system up to the level of capillaries across I and II/III layers of neocortex. We used photothrombotic stroke model involving photoactive application of rose bengal to assure minimal invasiveness of the procedure and precise localization of the clot distribution center. We present the comparative analysis involving structural and angiographic maps of the stroke-affected brain enabling in-depth insight to the process of development of the disorder.

Collaborative effects of wavefront shaping and optical clearing agent in optical coherence tomography

NASA Astrophysics Data System (ADS)

Yu, Hyeonseung; Lee, Peter; Jo, YoungJu; Lee, KyeoReh; Tuchin, Valery V.; Jeong, Yong; Park, YongKeun

2016-12-01

We demonstrate that simultaneous application of optical clearing agents (OCAs) and complex wavefront shaping in optical coherence tomography (OCT) can provide significant enhancement of penetration depth and imaging quality. OCA reduces optical inhomogeneity of a highly scattering sample, and the wavefront shaping of illumination light controls multiple scattering, resulting in an enhancement of the penetration depth and signal-to-noise ratio. A tissue phantom study shows that concurrent applications of OCA and wavefront shaping successfully operate in OCT imaging. The penetration depth enhancement is further demonstrated for ex vivo mouse ears, revealing hidden structures inaccessible with conventional OCT imaging.

Improve EPA's AIRNow Air Quality Index Maps with NASA/NOAA Satellite Data

NASA Astrophysics Data System (ADS)

Pasch, A.; Zahn, P. H.; DeWinter, J. L.; Haderman, M. D.; White, J. E.; Dickerson, P.; Dye, T. S.; Martin, R. V.

2011-12-01

The U.S. Environmental Protection Agency's (EPA) AIRNow program provides maps of real-time hourly Air Quality Index (AQI) conditions and daily AQI forecasts nationwide (http://www.airnow.gov). The public uses these maps to make decisions concerning their respiratory health. The usefulness of the AIRNow air quality maps depends on the accuracy and spatial coverage of air quality measurements. Currently, the maps use only ground-based measurements, which have significant gaps in coverage in some parts of the United States. As a result, contoured AQI levels have high uncertainty in regions far from monitors. To improve the usefulness of air quality maps, scientists at EPA and Sonoma Technology, Inc. are working in collaboration with the National Aeronautics and Space Administration (NASA), the National Oceanic and Atmospheric Administration (NOAA), and university researchers on a project to incorporate additional measurements into the maps via the AIRNow Satellite Data Processor (ASDP). These measurements include estimated surface PM

Cassini ISS and VIMS observations of Titan's north polar region during the T120 and T121 flybys: The Curious Case of the Clouds

NASA Astrophysics Data System (ADS)

Turtle, E. P.; Barnes, J. W.; Perry, J.; Barbara, J.; Hayes, A.; Corlies, P.; Kelland, J.; West, R. A.; Del Genio, A. D.; Soderblom, J. M.; McEwen, A. S.; Sotin, C.

2016-12-01

As northern summer approaches, atmospheric circulation models predict storm activity will pick up at Titan's high northern latitudes, as was observed at high southern latitudes upon Cassini's arrival during late southern summer in 2004. Cassini's Imaging Science Subsystem (ISS) and Visual and Infrared Mapping Spectrometer (VIMS) teams have been targeting Titan to document changes in weather patterns over the course of the mission, and there is particular interest in following the onset of clouds in the north polar region where Titan's lakes and seas are concentrated. The T120 and T121 flybys of Titan, on 7 June and 25 July 2016, respectively, provided views of high northern latitudes, and each instrument performed a series of observations over more than 24 hours during both flybys. Intriguingly, at first look the ISS and VIMS observations appear strikingly different from each other: in the ISS observations made during each flyby, surface features are apparent and only a few isolated clouds are detected; however, the VIMS observations suggest widespread cloud cover at high northern latitudes during both flybys. Although the instruments achieve different resolutions, that alone cannot explain the differences. The observations were made over the same time periods, so differences in illumination geometry or changes in the clouds themselves are also unlikely to be the cause for the apparent discrepancy; VIMS shows persistent atmospheric features over the entire observation period and ISS consistently detects surface features with just a few localized clouds. Clouds with low optical depth (lower than the optical depth of Titan's atmospheric haze at the same wavelength) might be more easily apparent at the longer wavelengths of the VIMS observations, which extend out to 5 µm (haze optical depth 0.2), compared to the ISS observations at 938 nm (haze optical depth 2). However, the lack of any apparent change in the visibility of lakes and seas in the ISS images compared to previous flybys where no clouds were observed is still difficult to explain. We will present our analyses of the sequences of observations made by ISS and VIMS during T120 and T121, as well as an ongoing ground-based observing campaign (including data from 8 June and 23 July), and the implications for the behavior of Titan's atmosphere leading up to northern summer.

Dust altitude and infrared optical depth retrieved from 6 years of AIRS observations : a focus on Saharan dust using A-Train synergy (MODIS, CALIOP)

NASA Astrophysics Data System (ADS)

Peyridieu, S.; Chédin, A.; Capelle, V.; Pierangelo, C.; Lamquin, N.; Armante, R.

2009-04-01

Observation from space, being global and quasi-continuous, is a first importance tool for aerosol studies. Remote sensing in the visible domain has been widely used to obtain better characterization of these particles and their effect on solar radiation. On the opposite, remote sensing of aerosols in the thermal infrared domain still remains marginal. However, knowledge of the effect of aerosols on terrestrial radiation is needed for the evaluation of their total radiative forcing. Infrared remote sensing provides a way to retrieve other aerosol characteristics, including their mean altitude. Moreover, observations are possible at night and day, over ocean and over land. In this context, six years (2003-2008) of the 2nd generation vertical sounder AIRS observations have been processed over the tropical belt (30°N-30°S). Our results of the dust optical depth at 10 µm have been compared to the 0.55 µm Aqua/MODIS optical depth product for this period. The detailed study of Atlantic regions shows a very good agreement between the two products, with a VIS/IR ratio around 0.3-0.5 during the Saharan dust season. Comparing these two AOD products should allow separating different aerosols signals, given that our retrieval algorithm is specifically designed for dust coarse mode whereas MODIS retrieves both accumulation and fine aerosol modes. Mean aerosol layer altitude has also been retrieved from AIRS data and we show global maps and time series of altitude retrieved from space. Altitude retrievals are compared to the CALIOP/Calipso Level-2 product starting June 2006. This comparison, for a region located downwind from the Sahara, again shows a good agreement demonstrating that our algorithm effectively allows retrieving reliable mean dust layer altitude. A global climatology of the dust optical depth at 10 µm and of the aerosol layer mean altitude has also been established. An interesting conclusion is the fact that if the AOD decreases from Africa to the Caribbean as a result of transport and dilution, altitude decreases less rapidly. This is in agreement with in situ measurements made during the Puerto Rico Dust Experiment (PRIDE) campaign and modelled forward trajectories.

Thermal and albedo mapping of the polar regions of Mars using Viking thermal mapper observations: 2. South polar region

NASA Technical Reports Server (NTRS)

Paige, David A.; Keegan, Kenneth D.

1994-01-01

We present the first maps of the apparent thermal inertia and albedo of the south polar region of Mars. The observations used to create these maps were acquired by the infrared thermal mapper (IRTM) instruments on the two Viking Orbiters over a 30-day period in 1977 during the Martian late southern summer season. The maps cover the region from 60 deg S to the south pole at a spatial resolution of 1 deg of latitude, thus completing the initial thermal mapping of the entire planet. The analysis and interpretation of these maps is aided by the results of a one-dimensional radiative convective model, which is used to calculate diurnal variations in surface and atmospheric temperatures, and brightness temperatures at the top of the atmosphere for a range of assumptions concerning dust optical properties and dust optical depths. The maps show that apparent thermal inertias of bare ground regions decrease systematically from 60 deg S to the south pole. In unfrosted regions close to the south pole, apparent thermal inertias are among the lowest observed anywhere on the planet. On the south residual cap, apparent thermal inertias are very high due to the presence of CO2 frost. In most other regions of Mars, best fit apparent albedos based on thermal emission measurements are generally in good agreement with actual surface albedos based on broadband solar reflectance measurements. The one-dimensional atmospheric model calculations also predict anomalously cold brightness temperatures close to the pole during late summer, and after considering a number of alternatives, it is concluded that the net surface cooling due to atmospheric dust is the best explanation for this phenomenon. The region of lowest apparent thermal inertia close to the pole, which includes the south polar layered deposits, is interpreted to be mantled by a continuous layer of aeolian material that must be at least a few millimeters thick. The low thermal inertias mapped in the south polar region imply an absence of surface water ice deposits, which is consistent with Viking Mars atmospheric water detector (MAWD) measurements which show low atmospheric water vapor abundances throughout the summer season.

Depth-sensitive optical spectroscopy for layered tissue measurements (Conference Presentation)

NASA Astrophysics Data System (ADS)

Liu, Wei; Yu, Xiaojun; Liu, Quan; Liu, Linbo; Ong, Yi Hong

2017-02-01

Disease diagnosis based on the visual inspection of the pathological presentations or symptoms on the epithelial tissue such as the skin are subjective and highly depend on the experience of the doctors. Vital diagnostic information for the accurate identification of diseases is usually located underneath the surface and its depth distribution is known to be related to disease progression. Although optical spectroscopic measurements are fast and non-invasive, the accurate retrieval of the depth-specific diagnostic information is complicated by the heterogeneous nature of epithelial tissues. The optical signal measured from a tissue is often the result of averaging from a large tissue volume that mixes information from the region of interest and the surrounding tissue region, especially from the overlaying layers. Our group has developed a series of techniques for depth sensitive optical measurements from such layered tissues. We will first review the earlier development of composite fiber-optic probe, in which the source-detector separation and the angles of source and detector fibers are varied to achieve depth sensitive measurements. Then the more recent development of non-contact axicon lens based probes for depth sensitive fluorescence measurements and the corresponding numerical methods for optimization will be introduced. Finally, the most recently developed snapshot axicon lens based probe that can measure Raman spectra from five different depths at the same time will be discussed. Results from tissue phantoms, ex vivo pork samples and in vivo fingernail measurements will be presented, which indicates the great potential of depth sensitive optical spectroscopy for clinical tissue diagnosis.

Satellite Monitoring of Boston Harbor Water Quality: Initial Investigations

NASA Astrophysics Data System (ADS)

Sheldon, P.; Chen, R. F.; Schaaf, C.; Pahlevan, N.; Lee, Z.

2016-02-01

The transformation of Boston Harbor from the "dirtiest in America" to a National Park Area is one of the most remarkable estuarine recoveries in the world. A long-term water quality dataset from 1991 to present exists in Boston Harbor due to a $3. 8 billion lawsuit requiring the harbor clean-up. This project uses discrete water sampling and underway transects with a towed vehicle coordinated with Landsat 7 and Landsat 8 to create surface maps of chlorophyll a (Chl a), dissolved organic matter (CDOM and DOC), total suspended solids (TSS), diffuse attenuation coefficient (Kd_490), and photic depth in Boston Harbor. In addition, 3 buoys have been designed, constructed, and deployed in Boston Harbor that measure Chl a and CDOM fluorescence, optical backscatter, salinity, temperature, and meteorological parameters. We are initially using summer and fall of 2015 to develop atmospheric corrections for conditions in Boston Harbor and develop algorithms for Landsat 8 data to estimate in water photic depth, TSS, Chl a, Kd_490, and CDOM. We will report on initial buoy and cruise data and show 2015 Landsat-derived distributions of water quality parameters. It is our hope that once algorithms for present Landsat imagery can be developed, historical maps of water quality can be constructed using in water data back to 1991.

GALEX: a UV telescope to map the star formation history of the universe

NASA Astrophysics Data System (ADS)

Milliard, Bruno; Grange, Robert; Martin, Christopher; Schiminovich, David

2017-11-01

The NASA Small Mission EXplorer GALEX (PI: C.Martin, Caltech) is under development at JPL for launch late 2001. It has been designed to map the history of star formation in the Universe over the redshift range 0-2, a major era where galaxies and gas content evolved dramatically. The expected depth and imaging quality matches the Palomar Observatory Surveys, allowing GALEX to provide the astronomical community with a database of FUV photometric and spectroscopic observations of several million galaxies in the nearby and distant Universe. The 1.24 degree FOV, 50 cm aperture compact Ritchey-Chrétien telescope is equipped with two 65 mm photon-counting detectors. It will perform several surveys of different coverage and depths, that will take advantage of a high throughput UV-transmissive Grism newly developed in France to easily switch between imagery and field spectroscopy modes. A thin aspherized fused silica dichroic component provides simultaneous observations in two UV bands (135-185 nm and 185-300 nm) as well as correction for field aberrations. We shall briefly present the mission science goals, and will describe the optical concept, along with the guidelines and compromises used for its optimization in the context of the "Faster, Better, Cheaper" NASA philosophy, and give a brief development status report.

Virtual optical network mapping and core allocation in elastic optical networks using multi-core fibers

NASA Astrophysics Data System (ADS)

Xuan, Hejun; Wang, Yuping; Xu, Zhanqi; Hao, Shanshan; Wang, Xiaoli

2017-11-01

Virtualization technology can greatly improve the efficiency of the networks by allowing the virtual optical networks to share the resources of the physical networks. However, it will face some challenges, such as finding the efficient strategies for virtual nodes mapping, virtual links mapping and spectrum assignment. It is even more complex and challenging when the physical elastic optical networks using multi-core fibers. To tackle these challenges, we establish a constrained optimization model to determine the optimal schemes of optical network mapping, core allocation and spectrum assignment. To solve the model efficiently, tailor-made encoding scheme, crossover and mutation operators are designed. Based on these, an efficient genetic algorithm is proposed to obtain the optimal schemes of the virtual nodes mapping, virtual links mapping, core allocation. The simulation experiments are conducted on three widely used networks, and the experimental results show the effectiveness of the proposed model and algorithm.

An efficient hole-filling method based on depth map in 3D view generation

NASA Astrophysics Data System (ADS)

Liang, Haitao; Su, Xiu; Liu, Yilin; Xu, Huaiyuan; Wang, Yi; Chen, Xiaodong

2018-01-01

New virtual view is synthesized through depth image based rendering(DIBR) using a single color image and its associated depth map in 3D view generation. Holes are unavoidably generated in the 2D to 3D conversion process. We propose a hole-filling method based on depth map to address the problem. Firstly, we improve the process of DIBR by proposing a one-to-four (OTF) algorithm. The "z-buffer" algorithm is used to solve overlap problem. Then, based on the classical patch-based algorithm of Criminisi et al., we propose a hole-filling algorithm using the information of depth map to handle the image after DIBR. In order to improve the accuracy of the virtual image, inpainting starts from the background side. In the calculation of the priority, in addition to the confidence term and the data term, we add the depth term. In the search for the most similar patch in the source region, we define the depth similarity to improve the accuracy of searching. Experimental results show that the proposed method can effectively improve the quality of the 3D virtual view subjectively and objectively.

Selective Removal of Natural Occlusal Caries by Coupling Near-infrared Imaging with a CO2 Laser

PubMed Central

Tao, You-Chen; Fried, Daniel

2011-01-01

Laser removal of dental hard tissue can be combined with optical, spectral or acoustic feedback systems to selectively ablate dental caries and restorative materials. Near-infrared (NIR) imaging has considerable potential for the optical discrimination of sound and demineralized tissue. Last year we successfully demonstrated that near-IR images can be used to guide a CO2 laser ablation system for the selective removal of artificial caries lesions on smooth surfaces. The objective of this study was to test the hypothesis that two-dimensional near-infrared images of natural occlusal caries can be used to guide a CO2 laser for selective removal. Two-dimensional NIR images were acquired at 1310-nm of extracted human molar teeth with occlusal caries. Polarization sensitive optical coherence tomography (PS-OCT) was also used to acquire depth-resolved images of the lesion areas. An imaging processing module was developed to analyze the NIR imaging output and generate optical maps that were used to guide a CO2 laser to selectively remove the lesions at a uniform depth. Post-ablation NIR images were acquired to verify caries removal. Based on the analysis of the NIR images, caries lesions were selectively removed with a CO2 laser while sound tissues were conserved. However, the removal rate varied markedly with the severity of decay and multiple passes were required for caries removal. These initial results are promising but indicate that the selective removal of natural caries is more challenging than the selective removal of artificial lesions due to varying tooth geometry, the highly variable organic/mineral ratio in natural lesions and more complicated lesion structure. PMID:21909225

Selective removal of natural occlusal caries by coupling near-infrared imaging with a CO II laser

NASA Astrophysics Data System (ADS)

Tao, You-Chen; Fried, Daniel

2008-02-01

Laser removal of dental hard tissue can be combined with optical, spectral or acoustic feedback systems to selectively ablate dental caries and restorative materials. Near-infrared (NIR) imaging has considerable potential for the optical discrimination of sound and demineralized tissue. Last year we successfully demonstrated that near-IR images can be used to guide a CO2 laser ablation system for the selective removal of artificial caries lesions on smooth surfaces. The objective of this study was to test the hypothesis that two-dimensional near-infrared images of natural occlusal caries can be used to guide a CO2 laser for selective removal. Two-dimensional NIR images were acquired at 1310-nm of extracted human molar teeth with occlusal caries. Polarization sensitive optical coherence tomography (PS-OCT) was also used to acquire depth-resolved images of the lesion areas. An imaging processing module was developed to analyze the NIR imaging output and generate optical maps that were used to guide a CO2 laser to selectively remove the lesions at a uniform depth. Post-ablation NIR images were acquired to verify caries removal. Based on the analysis of the NIR images, caries lesions were selectively removed with a CO2 laser while sound tissues were conserved. However, the removal rate varied markedly with the severity of decay and multiple passes were required for caries removal. These initial results are promising but indicate that the selective removal of natural caries is more challenging than the selective removal of artificial lesions due to varying tooth geometry, the highly variable organic/mineral ratio in natural lesions and more complicated lesion structure.

Selective Removal of Natural Occlusal Caries by Coupling Near-infrared Imaging with a CO(2) Laser.

PubMed

Tao, You-Chen; Fried, Daniel

2008-03-01

Laser removal of dental hard tissue can be combined with optical, spectral or acoustic feedback systems to selectively ablate dental caries and restorative materials. Near-infrared (NIR) imaging has considerable potential for the optical discrimination of sound and demineralized tissue. Last year we successfully demonstrated that near-IR images can be used to guide a CO(2) laser ablation system for the selective removal of artificial caries lesions on smooth surfaces. The objective of this study was to test the hypothesis that two-dimensional near-infrared images of natural occlusal caries can be used to guide a CO(2) laser for selective removal. Two-dimensional NIR images were acquired at 1310-nm of extracted human molar teeth with occlusal caries. Polarization sensitive optical coherence tomography (PS-OCT) was also used to acquire depth-resolved images of the lesion areas. An imaging processing module was developed to analyze the NIR imaging output and generate optical maps that were used to guide a CO(2) laser to selectively remove the lesions at a uniform depth. Post-ablation NIR images were acquired to verify caries removal. Based on the analysis of the NIR images, caries lesions were selectively removed with a CO(2) laser while sound tissues were conserved. However, the removal rate varied markedly with the severity of decay and multiple passes were required for caries removal. These initial results are promising but indicate that the selective removal of natural caries is more challenging than the selective removal of artificial lesions due to varying tooth geometry, the highly variable organic/mineral ratio in natural lesions and more complicated lesion structure.

Compact light-emitting-diode sun photometer for atmospheric optical depth measurements.

PubMed

Acharya, Y B; Jayaraman, A; Ramachandran, S; Subbaraya, B H

1995-03-01

A new compact light-emitting diode (LED) sun photometer, in which a LED is used as a spectrally selective photodetector as well as a nonlinear feedback element in the operational amplifier, has been developed. The output voltage that is proportional to the logarithm of the incident solar intensity permits the direct measurement of atmospheric optical depths in selected spectral bands. Measurements made over Ahmedabad, India, show good agreement, within a few percent, of optical depths derived with a LED as a photodetector in a linear mode and with a LED as both a photodetector and a feedback element in an operational amplifier in log mode. The optical depths are also found to compare well with those obtained simultaneously with a conventional filter photometer.

Optical cryptography with biometrics for multi-depth objects.

PubMed

Yan, Aimin; Wei, Yang; Hu, Zhijuan; Zhang, Jingtao; Tsang, Peter Wai Ming; Poon, Ting-Chung

2017-10-11

We propose an optical cryptosystem for encrypting images of multi-depth objects based on the combination of optical heterodyne technique and fingerprint keys. Optical heterodyning requires two optical beams to be mixed. For encryption, each optical beam is modulated by an optical mask containing either the fingerprint of the person who is sending, or receiving the image. The pair of optical masks are taken as the encryption keys. Subsequently, the two beams are used to scan over a multi-depth 3-D object to obtain an encrypted hologram. During the decryption process, each sectional image of the 3-D object is recovered by convolving its encrypted hologram (through numerical computation) with the encrypted hologram of a pinhole image that is positioned at the same depth as the sectional image. Our proposed method has three major advantages. First, the lost-key situation can be avoided with the use of fingerprints as the encryption keys. Second, the method can be applied to encrypt 3-D images for subsequent decrypted sectional images. Third, since optical heterodyning scanning is employed to encrypt a 3-D object, the optical system is incoherent, resulting in negligible amount of speckle noise upon decryption. To the best of our knowledge, this is the first time optical cryptography of 3-D object images has been demonstrated in an incoherent optical system with biometric keys.

The morphological changes of optically cleared cochlea using optical coherence tomography (Conference Presentation)

NASA Astrophysics Data System (ADS)

Lee, Jaeyul; Song, Jaewon; Jeon, Mansik; Kim, Jeehyun

2017-02-01

In this study, we monitored the optical clearing effects by immersing ex vivo guinea pig cochlea samples in ethylenediaminetetraacetic acid (EDTA) to study the internal microstructures in the morphology of guinea pig cochlea. The imaging limitations due to the guinea pig cochlea structures were overcome by optical clearing technique. Subsequently, the study was carried out to confirm the required approximate immersing duration of cochlea in EDTA-based optical clearing to obtain the best optimal depth visibility for guinea pig cochlea samples. Thus, we implemented a decalcification-based optical clearing effect to guinea pig cochlea samples to enhance the depth visualization of internal microstructures using swept source optical coherence tomography (OCT). The obtained nondestructive two-dimensional OCT images successfully illustrated the feasibility of the proposed method by providing clearly visible microstructures in the depth direction as a result of decalcification. The most optimal clearing outcomes for the guinea pig cochlea were obtained after 14 consecutive days. The quantitative assessment results verified the increase of the intensity as well as the thickness measurements of the internal microstructures. Following this method, difficulties in imaging of internal cochlea microstructures of guinea pigs could be avoided. The obtained results verified that the depth visibility of the decalcified ex vivo guinea pig cochlea samples was enhanced. Therefore, the proposed EDTA-based optical clearing method for guinea pig can be considered as a potential application for depth-enhanced OCT visualization.

Atlas of depth-duration frequency of precipitation annual maxima for Texas

USGS Publications Warehouse

Asquith, William H.; Roussel, Meghan C.

2004-01-01

Ninety-six maps depicting the spatial variation of the depth-duration frequency of precipitation annual maxima for Texas are presented. The recurrence intervals represented are 2, 5, 10, 25, 50, 100, 250, and 500 years. The storm durations represented are 15 and 30 minutes; 1, 2, 3, 6, and 12 hours; and 1, 2, 3, 5, and 7 days. The maps were derived using geographically referenced parameter maps of probability distributions used in previously published research by the U.S. Geological Survey to model the magnitude and frequency of precipitation annual maxima for Texas. The maps in this report apply that research and update depth-duration frequency of precipitation maps available in earlier studies done by the National Weather Service.

Spectrally based bathymetric mapping of a dynamic, sand‐bedded channel: Niobrara River, Nebraska, USA

USGS Publications Warehouse

Dilbone, Elizabeth; Legleiter, Carl; Alexander, Jason S.; McElroy, Brandon

2018-01-01

Methods for spectrally based mapping of river bathymetry have been developed and tested in clear‐flowing, gravel‐bed channels, with limited application to turbid, sand‐bed rivers. This study used hyperspectral images and field surveys from the dynamic, sandy Niobrara River to evaluate three depth retrieval methods. The first regression‐based approach, optimal band ratio analysis (OBRA), paired in situ depth measurements with image pixel values to estimate depth. The second approach used ground‐based field spectra to calibrate an OBRA relationship. The third technique, image‐to‐depth quantile transformation (IDQT), estimated depth by linking the cumulative distribution function (CDF) of depth to the CDF of an image‐derived variable. OBRA yielded the lowest depth retrieval mean error (0.005 m) and highest observed versus predicted R2 (0.817). Although misalignment between field and image data did not compromise the performance of OBRA in this study, poor georeferencing could limit regression‐based approaches such as OBRA in dynamic, sand‐bedded rivers. Field spectroscopy‐based depth maps exhibited a mean error with a slight shallow bias (0.068 m) but provided reliable estimates for most of the study reach. IDQT had a strong deep bias but provided informative relative depth maps. Overprediction of depth by IDQT highlights the need for an unbiased sampling strategy to define the depth CDF. Although each of the techniques we tested demonstrated potential to provide accurate depth estimates in sand‐bed rivers, each method also was subject to certain constraints and limitations.

Dynamic analysis of reactive oxygen nitrogen species in plasma-activated culture medium by UV absorption spectroscopy

NASA Astrophysics Data System (ADS)

Brubaker, Timothy R.; Ishikawa, Kenji; Takeda, Keigo; Oh, Jun-Seok; Kondo, Hiroki; Hashizume, Hiroshi; Tanaka, Hiromasa; Knecht, Sean D.; Bilén, Sven G.; Hori, Masaru

2017-12-01

The liquid-phase chemical kinetics of a cell culture basal medium during treatment by an argon-fed, non-equilibrium atmospheric-pressure plasma source were investigated using real-time ultraviolet absorption spectroscopy and colorimetric assays. Depth- and time-resolved NO2- and NO3- concentrations were strongly inhomogeneous and primarily driven by convection during and after plasma-liquid interactions. H2O2 concentrations determined from deconvolved optical depth spectra were found to compensate for the optical depth spectra of excluded reactive species and changes in dissolved gas content. Plasma-activated media remained weakly basic due to NaHCO3 buffering, preventing the H+-catalyzed decomposition of NO2- seen in acidic plasma-activated water. An initial increase in pH may indicate CO2 sparging. Furthermore, the pH-dependency of UV optical depth spectra illustrated the need for pH compensation in the fitting of optical depth data.

Approach for scene reconstruction from the analysis of a triplet of still images

NASA Astrophysics Data System (ADS)

Lechat, Patrick; Le Mestre, Gwenaelle; Pele, Danielle

1997-03-01

Three-dimensional modeling of a scene from the automatic analysis of 2D image sequences is a big challenge for future interactive audiovisual services based on 3D content manipulation such as virtual vests, 3D teleconferencing and interactive television. We propose a scheme that computes 3D objects models from stereo analysis of image triplets shot by calibrated cameras. After matching the different views with a correlation based algorithm, a depth map referring to a given view is built by using a fusion criterion taking into account depth coherency, visibility constraints and correlation scores. Because luminance segmentation helps to compute accurate object borders and to detect and improve the unreliable depth values, a two steps segmentation algorithm using both depth map and graylevel image is applied to extract the objects masks. First an edge detection segments the luminance image in regions and a multimodal thresholding method selects depth classes from the depth map. Then the regions are merged and labelled with the different depth classes numbers by using a coherence test on depth values according to the rate of reliable and dominant depth values and the size of the regions. The structures of the segmented objects are obtained with a constrained Delaunay triangulation followed by a refining stage. Finally, texture mapping is performed using open inventor or VRML1.0 tools.

The Cosmology Large Angular Scale Surveyor

NASA Technical Reports Server (NTRS)

Harrington, Kathleen; Marriage, Tobias; Ali, Aamir; Appel, John; Bennett, Charles; Boone, Fletcher; Brewer, Michael; Chan, Manwei; Chuss, David T.; Colazo, Felipe;

Removing sun glint from optical remote sensing images of shallow rivers

USGS Publications Warehouse

Overstreet, Brandon T.; Legleiter, Carl

2017-01-01

Sun glint is the specular reflection of light from the water surface, which often causes unusually bright pixel values that can dominate fluvial remote sensing imagery and obscure the water-leaving radiance signal of interest for mapping bathymetry, bottom type, or water column optical characteristics. Although sun glint is ubiquitous in fluvial remote sensing imagery, river-specific methods for removing sun glint are not yet available. We show that existing sun glint-removal methods developed for multispectral images of marine shallow water environments over-correct shallow portions of fluvial remote sensing imagery resulting in regions of unreliable data along channel margins. We build on existing marine glint-removal methods to develop a river-specific technique that removes sun glint from shallow areas of the channel without overcorrection by accounting for non-negligible water-leaving near-infrared radiance. This new sun glint-removal method can improve the accuracy of spectrally-based depth retrieval in cases where sun glint dominates the at-sensor radiance. For an example image of the gravel-bed Snake River, Wyoming, USA, observed-vs.-predicted R2 values for depth retrieval improved from 0.66 to 0.76 following sun glint removal. The methodology presented here is straightforward to implement and could be incorporated into image processing workflows for multispectral images that include a near-infrared band.

Sparse estimation of model-based diffuse thermal dust emission

NASA Astrophysics Data System (ADS)

Irfan, Melis O.; Bobin, Jérôme

2018-03-01

Component separation for the Planck High Frequency Instrument (HFI) data is primarily concerned with the estimation of thermal dust emission, which requires the separation of thermal dust from the cosmic infrared background (CIB). For that purpose, current estimation methods rely on filtering techniques to decouple thermal dust emission from CIB anisotropies, which tend to yield a smooth, low-resolution, estimation of the dust emission. In this paper, we present a new parameter estimation method, premise: Parameter Recovery Exploiting Model Informed Sparse Estimates. This method exploits the sparse nature of thermal dust emission to calculate all-sky maps of thermal dust temperature, spectral index, and optical depth at 353 GHz. premise is evaluated and validated on full-sky simulated data. We find the percentage difference between the premise results and the true values to be 2.8, 5.7, and 7.2 per cent at the 1σ level across the full sky for thermal dust temperature, spectral index, and optical depth at 353 GHz, respectively. A comparison between premise and a GNILC-like method over selected regions of our sky simulation reveals that both methods perform comparably within high signal-to-noise regions. However, outside of the Galactic plane, premise is seen to outperform the GNILC-like method with increasing success as the signal-to-noise ratio worsens.

Fast imaging with inelastically scattered electrons by off-axis chromatic confocal electron microscopy.

PubMed

Zheng, Changlin; Zhu, Ye; Lazar, Sorin; Etheridge, Joanne

2014-04-25

We introduce off-axis chromatic scanning confocal electron microscopy, a technique for fast mapping of inelastically scattered electrons in a scanning transmission electron microscope without a spectrometer. The off-axis confocal mode enables the inelastically scattered electrons to be chromatically dispersed both parallel and perpendicular to the optic axis. This enables electrons with different energy losses to be separated and detected in the image plane, enabling efficient energy filtering in a confocal mode with an integrating detector. We describe the experimental configuration and demonstrate the method with nanoscale core-loss chemical mapping of silver (M4,5) in an aluminium-silver alloy and atomic scale imaging of the low intensity core-loss La (M4,5@840  eV) signal in LaB6. Scan rates up to 2 orders of magnitude faster than conventional methods were used, enabling a corresponding reduction in radiation dose and increase in the field of view. If coupled with the enhanced depth and lateral resolution of the incoherent confocal configuration, this offers an approach for nanoscale three-dimensional chemical mapping.

Informing Aerosol Transport Models With Satellite Multi-Angle Aerosol Measurements

NASA Technical Reports Server (NTRS)

Limbacher, J.; Patadia, F.; Petrenko, M.; Martin, M. Val; Chin, M.; Gaitley, B.; Garay, M.; Kalashnikova, O.; Nelson, D.; Scollo, S.

2011-01-01

As the aerosol products from the NASA Earth Observing System's Multi-angle Imaging SpectroRadiometer (MISR) mature, we are placing greater focus on ways of using the aerosol amount and type data products, and aerosol plume heights, to constrain aerosol transport models. We have demonstrated the ability to map aerosol air-mass-types regionally, and have identified product upgrades required to apply them globally, including the need for a quality flag indicating the aerosol type information content, that varies depending upon retrieval conditions. We have shown that MISR aerosol type can distinguish smoke from dust, volcanic ash from sulfate and water particles, and can identify qualitative differences in mixtures of smoke, dust, and pollution aerosol components in urban settings. We demonstrated the use of stereo imaging to map smoke, dust, and volcanic effluent plume injection height, and the combination of MISR and MODIS aerosol optical depth maps to constrain wildfire smoke source strength. This talk will briefly highlight where we stand on these application, with emphasis on the steps we are taking toward applying the capabilities toward constraining aerosol transport models, planet-wide.

Cloud Optical Depth Retrievals from Solar Background "signal" of Micropulse Lidars

NASA Technical Reports Server (NTRS)

Chiu, J. Christine; Marshak, A.; Wiscombe, W.; Valencia, S.; Welton, E. J.

2007-01-01

Pulsed lidars are commonly used to retrieve vertical distributions of cloud and aerosol layers. It is widely believed that lidar cloud retrievals (other than cloud base altitude) are limited to optically thin clouds. Here we demonstrate that lidars can retrieve optical depths of thick clouds using solar background light as a signal, rather than (as now) merely a noise to be subtracted. Validations against other instruments show that retrieved cloud optical depths agree within 10-15% for overcast stratus and broken clouds. In fact, for broken cloud situations one can retrieve not only the aerosol properties in clear-sky periods using lidar signals, but also the optical depth of thick clouds in cloudy periods using solar background signals. This indicates that, in general, it may be possible to retrieve both aerosol and cloud properties using a single lidar. Thus, lidar observations have great untapped potential to study interactions between clouds and aerosols.

LASER APPLICATIONS AND OTHER TOPICS IN QUANTUM ELECTRONICS: Characterisation of optically cleared paper by optical coherence tomography

NASA Astrophysics Data System (ADS)

Fabritius, T.; Alarousu, E.; Prykäri, T.; Hast, J.; Myllylä, Risto

2006-02-01

Due to the highly light scattering nature of paper, the imaging depth of optical methods such as optical coherence tomography (OCT) is limited. In this work, we study the effect of refractive index matching on improving the imaging depth of OCT in paper. To this end, four different refractive index matching liquids (ethanol, 1-pentanol, glycerol and benzyl alcohol) with a refraction index between 1.359 and 1.538 were used in experiments. Low coherent light transmission was studied in commercial copy paper sheets, and the results indicate that benzyl alcohol offers the best improvement in imaging depth, while also being sufficiently stable for the intended purpose. Constructed cross-sectional images demonstrate visually that the imaging depth of OCT is considerably improved by optical clearing. Both surfaces of paper sheets can be detected along with information about the sheet's inner structure.

Monte Carlo simulation of the spatial resolution and depth sensitivity of two-dimensional optical imaging of the brain

PubMed Central

Tian, Peifang; Devor, Anna; Sakadžić, Sava; Dale, Anders M.; Boas, David A.

2011-01-01

Absorption or fluorescence-based two-dimensional (2-D) optical imaging is widely employed in functional brain imaging. The image is a weighted sum of the real signal from the tissue at different depths. This weighting function is defined as “depth sensitivity.” Characterizing depth sensitivity and spatial resolution is important to better interpret the functional imaging data. However, due to light scattering and absorption in biological tissues, our knowledge of these is incomplete. We use Monte Carlo simulations to carry out a systematic study of spatial resolution and depth sensitivity for 2-D optical imaging methods with configurations typically encountered in functional brain imaging. We found the following: (i) the spatial resolution is <200 μm for NA ≤0.2 or focal plane depth ≤300 μm. (ii) More than 97% of the signal comes from the top 500 μm of the tissue. (iii) For activated columns with lateral size larger than spatial resolution, changing numerical aperature (NA) and focal plane depth does not affect depth sensitivity. (iv) For either smaller columns or large columns covered by surface vessels, increasing NA and∕or focal plane depth may improve depth sensitivity at deeper layers. Our results provide valuable guidance for the optimization of optical imaging systems and data interpretation. PMID:21280912

The Sloan Digital Sky Survey Reverberation Mapping Project: Ensemble Spectroscopic Variability of Quasar Broad Emission Lines

NASA Astrophysics Data System (ADS)

Sun, Mouyuan; Trump, Jonathan R.; Shen, Yue; Brandt, W. N.; Dawson, Kyle; Denney, Kelly D.; Hall, Patrick B.; Ho, Luis C.; Horne, Keith; Jiang, Linhua; Richards, Gordon T.; Schneider, Donald P.; Bizyaev, Dmitry; Kinemuchi, Karen; Oravetz, Daniel; Pan, Kaike; Simmons, Audrey

2015-09-01

We explore the variability of quasars in the Mg ii and {{H}}β broad emission lines and ultraviolet/optical continuum emission using the Sloan Digital Sky Survey Reverberation Mapping project (SDSS-RM). This is the largest spectroscopic study of quasar variability to date: our study includes 29 spectroscopic epochs from SDSS-RM over 6 months, containing 357 quasars with Mg ii and 41 quasars with {{H}}β . On longer timescales, the study is also supplemented with two-epoch data from SDSS-I/II. The SDSS-I/II data include an additional 2854 quasars with Mg ii and 572 quasars with {{H}}β . The Mg ii emission line is significantly variable ({{Δ }}f/f∼ 10% on ∼100-day timescales), a necessary prerequisite for its use for reverberation mapping studies. The data also confirm that continuum variability increases with timescale and decreases with luminosity, and the continuum light curves are consistent with a damped random-walk model on rest-frame timescales of ≳ 5 days. We compare the emission-line and continuum variability to investigate the structure of the broad-line region. Broad-line variability shows a shallower increase with timescale compared to the continuum emission, demonstrating that the broad-line transfer function is not a δ-function. {{H}}β is more variable than Mg ii (roughly by a factor of ∼1.5), suggesting different excitation mechanisms, optical depths and/or geometrical configuration for each emission line. The ensemble spectroscopic variability measurements enabled by the SDSS-RM project have important consequences for future studies of reverberation mapping and black hole mass estimation of 1\\lt z\\lt 2 quasars.

GPU-accelerated depth map generation for X-ray simulations of complex CAD geometries

NASA Astrophysics Data System (ADS)

Grandin, Robert J.; Young, Gavin; Holland, Stephen D.; Krishnamurthy, Adarsh

2018-04-01

Interactive x-ray simulations of complex computer-aided design (CAD) models can provide valuable insights for better interpretation of the defect signatures such as porosity from x-ray CT images. Generating the depth map along a particular direction for the given CAD geometry is the most compute-intensive step in x-ray simulations. We have developed a GPU-accelerated method for real-time generation of depth maps of complex CAD geometries. We preprocess complex components designed using commercial CAD systems using a custom CAD module and convert them into a fine user-defined surface tessellation. Our CAD module can be used by different simulators as well as handle complex geometries, including those that arise from complex castings and composite structures. We then make use of a parallel algorithm that runs on a graphics processing unit (GPU) to convert the finely-tessellated CAD model to a voxelized representation. The voxelized representation can enable heterogeneous modeling of the volume enclosed by the CAD model by assigning heterogeneous material properties in specific regions. The depth maps are generated from this voxelized representation with the help of a GPU-accelerated ray-casting algorithm. The GPU-accelerated ray-casting method enables interactive (> 60 frames-per-second) generation of the depth maps of complex CAD geometries. This enables arbitrarily rotation and slicing of the CAD model, leading to better interpretation of the x-ray images by the user. In addition, the depth maps can be used to aid directly in CT reconstruction algorithms.

LINKING Lyα AND LOW-IONIZATION TRANSITIONS AT LOW OPTICAL DEPTH

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jaskot, A. E.; Oey, M. S.

2014-08-20

We suggest that low optical depth in the Lyman continuum (LyC) may relate the Lyα emission, C II and Si II absorption, and C II* and Si II* emission seen in high-redshift galaxies. We base this analysis on Hubble Space Telescope Cosmic Origins Spectrograph spectra of four Green Pea (GP) galaxies, which may be analogs of z > 2 Lyα emitters (LAEs). In the two GPs with the strongest Lyα emission, the Lyα line profiles show reduced signs of resonant scattering. Instead, the Lyα profiles resemble the Hα line profiles of evolved star ejecta, suggesting that the Lyα emission originatesmore » from a low column density and similar outflow geometry. The weak C II absorption and presence of non-resonant C II* emission in these GPs support this interpretation and imply a low LyC optical depth along the line of sight. In two additional GPs, weak Lyα emission and strong C II absorption suggest a higher optical depth. These two GPs differ in their Lyα profile shapes and C II* emission strengths, however, indicating different inclinations of the outflows to our line of sight. With these four GPs as examples, we explain the observed trends linking Lyα, C II, and C II* in stacked LAE spectra, in the context of optical depth and geometric effects. Specifically, in some galaxies with strong Lyα emission, a low LyC optical depth may allow Lyα to escape with reduced scattering. Furthermore, C II absorption, C II* emission, and Lyα profile shape can reveal the optical depth, constrain the orientation of neutral outflows in LAEs, and identify candidate LyC emitters.« less

VLA+WSRT HI Imaging of Two "Almost Dark" Galaxies

NASA Astrophysics Data System (ADS)

Ball, Catie; Singer, Quinton; Cannon, John M.; Leisman, Luke; Haynes, Martha P.; Adams, Elizabeth A.; Bernal Neira, David; Giovanelli, Riccardo; Hallenbeck, Gregory L.; Janesh, William; Janowiecki, Steven; Jozsa, Gyula; Rhode, Katherine L.; Salzer, John Joseph

2017-01-01

We present sensitive HI imaging of the "Almost Dark" galaxies AGC229385 and AGC229101. Selected from the ALFALFA survey, "Almost Dark" galaxies have significant HI reservoirs but lack an obvious stellar counterpart in survey-depth ground-based optical imaging. Deeper ground- and space-based imaging reveals very low surface brightness optical counterparts in both systems. The resulting M_HI/L_B ratios are among the highest ever measured for individual galaxies. Here we combine VLA and WSRT imaging of these two systems, allowing us to preserve surface brightness sensitivity while working at high angular resolution. The resulting maps of HI mass surface density, velocity field, and velocity dispersion are compared to deep optical and ultraviolet imaging. In both systems the highest column density HI gas is clumpy and resolved into multiple components. In the case of AGC229385, the kinematics are inconsistent with a simple rotating disk and may be the result of either an infall episode or an interaction between two HI-rich disks.Support for this work was provided by NSF grant 1211683 to JMC at Macalester College.

Integrating proximal soil sensing techniques and terrain indexes to generate 3D maps of soil restrictive layers in the Palouse region, Washington, USA

NASA Astrophysics Data System (ADS)

Poggio, Matteo; Brown, David J.; Gasch, Caley K.; Brooks, Erin S.; Yourek, Matt A.

2015-04-01

In the Palouse region of eastern Washington and northern Idaho (USA), spatially discontinuous restrictive layers impede rooting growth and water infiltration. Consequently, accurate maps showing the depth and spatial extent of these restrictive layers are essential for watershed hydrologic modeling appropriate for precision agriculture. In this presentation, we report on the use of a Visible and Near-Infrared (VisNIR) penetrometer fore optic to construct detailed maps of three wheat fields in the Palouse region. The VisNIR penetrometer was used to deliver in situ soil reflectance to an Analytical Spectral Devices (ASD, Boulder, CO, USA) spectrometer and simultaneously acquire insertion force. With a hydraulic push-type soil coring systems for insertion (e.g. Giddings), we collected soil spectra and insertion force data along 41m x 41m grid points (2 fields) and 50m x 50m grid points (1 field) to ≈80cm depth, in addition to interrogation points at 36 representative instrumented locations per field. At each of the 36 instrumented locations, two soil cores were extracted for laboratory determination of clay content and bulk density. We developed calibration models of soil clay content and bulk density with spectra and insertion force collected in situ, using partial least squares regression 2 (PLSR2). Applying spline functions, we delineated clay and bulk density profiles at each points (grid and 24 locations). The soil profiles were then used as inputs in a regression-kriging model with terrain indexes and ECa data (derived from an EM38 field survey, Geonics, Mississauga, Ontario, Canada) as covariates to generate 3D soil maps. Preliminary results show that the VisNIR penetrometer can capture the spatial patterns of restrictive layers. Work is ongoing to evaluate the prediction accuracy of penetrometer-derived 3D clay content and restriction layer maps.

New 3D seismicity maps using chromo-stereoscopy with two alternative freewares

NASA Astrophysics Data System (ADS)

Okamoto, Y.

2011-12-01

Seismicity maps play a key role in an introduction of geosciences studies or outreach programs. Various techniques are used in order to show earthquakes in a three dimensional field. To use "chromo-stereoscopy" is our simple and easier-making solution. The Chroma Depth 3D Glasses are employed for this purpose. The glasses consist of two transparent blazed grating films covered with a paper holder and cost a little (1 US$). Looking through these glasses, the colored chart turns into three dimensional perspective due to the mechanism that the color codes make a depth dimension with dispersion. We use two complementary freewares to make maps, the GMT (Generic Mapping Tools, Wessel and Smith.1988) and the POV-Ray (Persistence of Vision Pty. Ltd. 2004). The two softwares have their own advantages; the GMT is specialized for map making with simple scripts, while the POV-Ray produces realistic 3D rendering images with more complicated scripts. The earthquakes are plotted with the rainbow color codes depending on their depths in a black background as printed or PC images. Therefore, the red colored shallow earthquakes are float in front and blue colored ones sink deeper. This effect is so amazing that the students who first wear these glasses are strongly moved and fascinated with this simple mechanism. The data used here are from JMA seismicity catalogue and USGS (ANSS) catalogue. The POV-Ray version needs coastline data, so we got them from the Coastline Extractor (NGDC) web site. Also, the POR-Ray has no function to draw lines in three dimensions, so we had to make some trials for showing them in relief. The main target of our map is "the Wadati-Beniof zone", in which the sub-ducting oceanic plate surface is fringed by deeper earthquakes colored yellow, green to blue. The active volcanic regions such as the Hawaii islands or the active fault regions such as the San Andreas Fault are also effective targets of our method. However, since their shallow complicated seismic structures rather than the sub-ducting plate boundaries, the amazing effect is somewhat spoiled. Now, we try to render a transparent sphere model to improve it. The future task is to evaluate the three dimensional effect quantitatively. Present version of our maps has some back draws, but their simple and easier-making process is quite suitable for study in class rooms and outreach purpose, not only for geosciences study itself but also for optics study at the secondary levels. The maps described here are now available in our website (http://www.osaka-kyoiku.ac.jp/ yossi/).

Thermal emission from interstellar dust in and near the Pleiades

NASA Technical Reports Server (NTRS)

White, Richard E.

1989-01-01

IRAS survey coadds for a 8.7 deg x 4.3 deg field near the Pleiades provide evidence for dynamical interaction between the cluster and the surrounding interstellar medium. The far-infrared images show large region of faint emission with bright rims east of the cluster, suggestive of a wake. Images of the far-infrared color temperature and 100 micron optical depth reveal temperature maxima and optical depth minima near the bright cluster stars, as well as a strong optical depth peak at the core of the adjacent CO cloud. Models for thermal dust emission near the stars indicate that most of the apparent optical depth minima near stars are illusory, but also provide indirect evidence for small interaction between the stars and the encroaching dust cloud.

LASER METHODS IN MEDICINE: Light absorption in blood during low-intensity laser irradiation of skin

NASA Astrophysics Data System (ADS)

Barun, V. V.; Ivanov, A. P.

2010-06-01

An analytical procedure is proposed for describing optical fields in biological tissues inhomogeneous in the depth direction, such as human skin, with allowance for multiple scattering. The procedure is used to investigate the depth distribution of the optical power density in homogeneous and multilayer dermis when the skin is exposed to a laser beam. We calculate the absorbed laser power spectra for oxy- and deoxyhaemoglobin at different depths in relation to the absorption selectivity of these haemoglobin derivatives and the spectral dependence of the optical power density and demonstrate that the spectra vary considerably with depth. A simple exponential approximation is proposed for the depth distribution of the power density in the epidermis and dermis.

Application of Airborne Hydrographic Laser Scanning for Mapping Shallow Water Riverine Environments in the Pacific Northwest, United States

NASA Astrophysics Data System (ADS)

Cooper, C.; Nayegandhi, A.; Faux, R.

2013-12-01

Small-footprint, green wavelength airborne LiDAR systems can provide seamless topography across the land-water interface at very high spatial resolution. These data have the potential to improve floodplain modeling, fisheries habitat assessments, stream restoration efforts, and other applications by continuously mapping shallow water depths that are difficult or impossible to measure using traditional ground-based or water-borne survey techniques. WSI (Corvallis, Oregon) in collaboration with Dewberry, (Tampa, Florida) and Riegl (Orlando, Florida), deployed the Riegl VQ-820-G hydrographic airborne laser scanner to map riverine and lacustrine environments from Oregon to Minnesota. Discussion will focus on the ability to accurately map depth and underwater structure, as well as riparian vegetation and terrain under different conditions. Results indicate that depth penetration varies with both water (i.e. clarity and surface conditions) and bottom conditions (i.e. substrate, depth, and landform). Depth penetration was typically limited to 1 Secchi depth or less across selected project areas. As an example, the green LiDAR system effectively mapped 83% of a shallow water river system, the Sandy River, with typical depths ranging from 0-2.5 meters. WSI will show quantitative comparisons of Green LiDAR surveys against more traditional methods such as rod or sonar surveys. WSI will also discuss advantages and limitations of Green LiDAR surveys for bathymetric modeling including survey accuracy, density, and efficiency along with data processing challenges not inherent with traditional NIR LiDAR processing.

Laser speckle imaging in the spatial frequency domain

PubMed Central

Mazhar, Amaan; Cuccia, David J.; Rice, Tyler B.; Carp, Stefan A.; Durkin, Anthony J.; Boas, David A.; Choi, Bernard; Tromberg, Bruce J.

2011-01-01

Laser Speckle Imaging (LSI) images interference patterns produced by coherent addition of scattered laser light to map subsurface tissue perfusion. However, the effect of longer path length photons is typically unknown and poses a limitation towards absolute quantification. In this work, LSI is integrated with spatial frequency domain imaging (SFDI) to suppress multiple scattering and absorption effects. First, depth sensitive speckle contrast is shown in phantoms by separating a deep source (4 mm) from a shallow source (2 mm) of speckle contrast by using a high spatial frequency of illumination (0.24 mm−1). We develop an SFD adapted correlation diffusion model and show that with high frequency (0.24 mm−1) illumination, doubling of absorption contrast results in only a 1% change in speckle contrast versus 25% change using a planar unmodulated (0 mm−1) illumination. Similar absorption change is mimicked in vivo imaging a finger occlusion and the relative speckle contrast change from baseline is 10% at 0.26 mm−1 versus 60% at 0 mm−1 during a finger occlusion. These results underscore the importance of path length and optical properties in determining speckle contrast. They provide an integrated approach for simultaneous mapping of blood flow (speckle contrast) and oxygenation (optical properties) which can be used to inform tissue metabolism. PMID:21698018

Computer aided manufacturing for complex freeform optics

NASA Astrophysics Data System (ADS)

Wolfs, Franciscus; Fess, Ed; Johns, Dustin; LePage, Gabriel; Matthews, Greg

2017-10-01

Recently, the desire to use freeform optics has been increasing. Freeform optics can be used to expand the capabilities of optical systems and reduce the number of optics needed in an assembly. The traits that increase optical performance also present challenges in manufacturing. As tolerances on freeform optics become more stringent, it is necessary to continue to improve methods for how the grinding and polishing processes interact with metrology. To create these complex shapes, OptiPro has developed a computer aided manufacturing package called PROSurf. PROSurf generates tool paths required for grinding and polishing freeform optics with multiple axes of motion. It also uses metrology feedback for deterministic corrections. ProSurf handles 2 key aspects of the manufacturing process that most other CAM systems struggle with. The first is having the ability to support several input types (equations, CAD models, point clouds) and still be able to create a uniform high-density surface map useable for generating a smooth tool path. The second is to improve the accuracy of mapping a metrology file to the part surface. To perform this OptiPro is using 3D error maps instead of traditional 2D maps. The metrology error map drives the tool path adjustment applied during processing. For grinding, the error map adjusts the tool position to compensate for repeatable system error. For polishing, the error map drives the relative dwell times of the tool across the part surface. This paper will present the challenges associated with these issues and solutions that we have created.

Energy-efficient virtual optical network mapping approaches over converged flexible bandwidth optical networks and data centers.

PubMed

Chen, Bowen; Zhao, Yongli; Zhang, Jie

2015-09-21

In this paper, we develop a virtual link priority mapping (LPM) approach and a virtual node priority mapping (NPM) approach to improve the energy efficiency and to reduce the spectrum usage over the converged flexible bandwidth optical networks and data centers. For comparison, the lower bound of the virtual optical network mapping is used for the benchmark solutions. Simulation results show that the LPM approach achieves the better performance in terms of power consumption, energy efficiency, spectrum usage, and the number of regenerators compared to the NPM approach.

AirMSPI ORACLES Cloud Droplet Data V001

Atmospheric Science Data Center

2018-05-05

AirMSPI_ORACLES_Cloud_Droplet_Size_and_Cloud_Optical_Depth L2 Derived Geophysical Parameters ... Order: Earthdata Search Parameters:  Cloud Optical Depth Cloud Droplet Effective Radius Cloud Droplet ...

Retrievals of Thick Cloud Optical Depth from the Geoscience Laser Altimeter System (GLAS) by Calibration of Solar Background Signal

NASA Technical Reports Server (NTRS)

Yang, Yuekui; Marshak, Alexander; Chiu, J. Christine; Wiscombe, Warren J.; Palm, Stephen P.; Davis, Anthony B.; Spangenberg, Douglas A.; Nguyen, Louis; Spinhirne, James D.; Minnis, Patrick

2008-01-01

Laser beams emitted from the Geoscience Laser Altimeter System (GLAS), as well as other space-borne laser instruments, can only penetrate clouds to a limit of a few optical depths. As a result, only optical depths of thinner clouds (< about 3 for GLAS) are retrieved from the reflected lidar signal. This paper presents a comprehensive study of possible retrievals of optical depth of thick clouds using solar background light and treating GLAS as a solar radiometer. To do so we first calibrate the reflected solar radiation received by the photon-counting detectors of GLAS' 532 nm channel, which is the primary channel for atmospheric products. The solar background radiation is regarded as a noise to be subtracted in the retrieval process of the lidar products. However, once calibrated, it becomes a signal that can be used in studying the properties of optically thick clouds. In this paper, three calibration methods are presented: (I) calibration with coincident airborne and GLAS observations; (2) calibration with coincident Geostationary Operational Environmental Satellite (GOES) and GLAS observations of deep convective clouds; (3) calibration from the first principles using optical depth of thin water clouds over ocean retrieved by GLAS active remote sensing. Results from the three methods agree well with each other. Cloud optical depth (COD) is retrieved from the calibrated solar background signal using a one-channel retrieval. Comparison with COD retrieved from GOES during GLAS overpasses shows that the average difference between the two retrievals is 24%. As an example, the COD values retrieved from GLAS solar background are illustrated for a marine stratocumulus cloud field that is too thick to be penetrated by the GLAS laser. Based on this study, optical depths for thick clouds will be provided as a supplementary product to the existing operational GLAS cloud products in future GLAS data releases.

Systems and methods that generate height map models for efficient three dimensional reconstruction from depth information

DOEpatents

Frahm, Jan-Michael; Pollefeys, Marc Andre Leon; Gallup, David Robert

2015-12-08

Methods of generating a three dimensional representation of an object in a reference plane from a depth map including distances from a reference point to pixels in an image of the object taken from a reference point. Weights are assigned to respective voxels in a three dimensional grid along rays extending from the reference point through the pixels in the image based on the distances in the depth map from the reference point to the respective pixels, and a height map including an array of height values in the reference plane is formed based on the assigned weights. An n-layer height map may be constructed by generating a probabilistic occupancy grid for the voxels and forming an n-dimensional height map comprising an array of layer height values in the reference plane based on the probabilistic occupancy grid.

Synergistic surface current mapping by spaceborne stereo imaging and coastal HF radar

NASA Astrophysics Data System (ADS)

Matthews, John Philip; Yoshikawa, Yutaka

2012-09-01

Well validated optical and radar methods of surface current measurement at high spatial resolution (nominally <100 m) from space can greatly advance our ability to monitor earth's oceans, coastal zones, lakes and rivers. With interest growing in optical along-track stereo techniques for surface current and wave motion determinations, questions of how to interpret such data and how to relate them to measurements made by better validated techniques arise. Here we make the first systematic appraisal of surface currents derived from along-track stereo Sun glitter (ATSSG) imagery through comparisons with simultaneous synoptic flows observed by coastal HF radars working at frequencies of 13.9 and 24.5 MHz, which return averaged currents within surface layers of roughly 1 m and 2 m depth respectively. At our Tsushima Strait (Japan) test site, we found that these two techniques provided largely compatible surface current patterns, with the main difference apparent in current strength. Within the northwest (southern) comparison region, the magnitudes of the ATSSG current vectors derived for 13 August 2006 were on average 22% (40%) higher than the corresponding vectors for the 1-m (2-m) depth radar. These results reflect near-surface vertical current structure, differences in the flow components sensed by the two techniques and disparities in instrumental performance. The vertical profile constructed here from ATSSG, HF radar and ADCP data is the first to resolve downwind drift in the upper 2 m of the open ocean. The profile e-folding depth suggests Stokes drift from waves of 10-m wavelength visible in the images.

A Search for HI Self-Absorption in the SGPS

NASA Astrophysics Data System (ADS)

Kavars, D. W.; Dickey, J. D.; McClure-Griffiths, N. M.; Gaensler, B. M.; Green, A. J.

2003-12-01

Using data from the Southern Galactic Plane Survey(SGPS) we present a routine to search for cold HI clouds in the Galaxy, based on their HI self-absorption(HISA) signature. The data was obtained using the Australia Telescope Compact Array and the Parkes Radio Telescope. The SGPS, because of its good angular and velocity resolution, is excellent for searching for HISA clouds. We have already analyzed a few of the more prominent HISA features, finding spin temperatures, Ts ˜ 20K, column densities, NHI ˜ 2 x 1020}cm{-2, and optical depths of ˜ 1. The next step is to search the entire SGPS. A search by eye is possible, but is biased towards the most pronounced features. To better understand the role HISA plays in the ISM, an automated search technique is required. Our routine takes the first and second derivatives of the HI emission brightness temperature with respect to velocity. Due to the sharp drop in the emission profile through a HISA cloud, the derivative profiles show characteristic positive and/or negative peaks. These peaks represent a population of clouds separate from random HI emission fluctuations. By setting thresholds on the derivative maps and defining HISA only if it passes both derivative tests, we can build an unbiased catalog of HISA candidates in the Galaxy. The number distribution can be used to put constraints on the parameters used to find the spin temperature and optical depth, allowing us to more accurately determine the temperature, column density, and optical depth distribution of HISA clouds. We also compare HISA with 12CO emission. In the Inner Galaxy from l=313 deg to l=338 deg we find 30-50% of HISA is associated with 12CO at a brightness temperature of at least 1K. This work was supported by NSF grant AST 97-32695 to the University of Minnesota.

Seals map bathymetry of the Antarctic continental shelf

NASA Astrophysics Data System (ADS)

Padman, Laurie; Costa, Daniel P.; Bolmer, S. Thompson; Goebel, Michael E.; Huckstadt, Luis A.; Jenkins, Adrian; McDonald, Birgitte I.; Shoosmith, Deborah R.

2010-11-01

We demonstrate the first use of marine mammal dive-depth data to improve maps of bathymetry in poorly sampled regions of the continental shelf. A group of 57 instrumented elephant seals made on the order of 2 × 105 dives over and near the continental shelf on the western side of the Antarctic Peninsula during five seasons, 2005-2009. Maximum dive depth exceeded 2000 m. For dives made near existing ship tracks with measured water depths H<700 m, ˜30% of dive depths were to the seabed, consistent with expected benthic foraging behavior. By identifying the deepest of multiple dives within small areas as a dive to the seabed, we have developed a map of seal-derived bathymetry. Our map fills in several regions for which trackline data are sparse, significantly improving delineation of troughs crossing the continental shelf of the southern Bellingshausen Sea.

Depth Profilometry via Multiplexed Optical High-Coherence Interferometry

PubMed Central

Kazemzadeh, Farnoud; Wong, Alexander; Behr, Bradford B.; Hajian, Arsen R.

2015-01-01

Depth Profilometry involves the measurement of the depth profile of objects, and has significant potential for various industrial applications that benefit from non-destructive sub-surface profiling such as defect detection, corrosion assessment, and dental assessment to name a few. In this study, we investigate the feasibility of depth profilometry using an Multiplexed Optical High-coherence Interferometry MOHI instrument. The MOHI instrument utilizes the spatial coherence of a laser and the interferometric properties of light to probe the reflectivity as a function of depth of a sample. The axial and lateral resolutions, as well as imaging depth, are decoupled in the MOHI instrument. The MOHI instrument is capable of multiplexing interferometric measurements into 480 one-dimensional interferograms at a location on the sample and is built with axial and lateral resolutions of 40 μm at a maximum imaging depth of 700 μm. Preliminary results, where a piece of sand-blasted aluminum, an NBK7 glass piece, and an optical phantom were successfully probed using the MOHI instrument to produce depth profiles, demonstrate the feasibility of such an instrument for performing depth profilometry. PMID:25803289

Depth profilometry via multiplexed optical high-coherence interferometry.

PubMed

Kazemzadeh, Farnoud; Wong, Alexander; Behr, Bradford B; Hajian, Arsen R

2015-01-01

Depth Profilometry involves the measurement of the depth profile of objects, and has significant potential for various industrial applications that benefit from non-destructive sub-surface profiling such as defect detection, corrosion assessment, and dental assessment to name a few. In this study, we investigate the feasibility of depth profilometry using an Multiplexed Optical High-coherence Interferometry MOHI instrument. The MOHI instrument utilizes the spatial coherence of a laser and the interferometric properties of light to probe the reflectivity as a function of depth of a sample. The axial and lateral resolutions, as well as imaging depth, are decoupled in the MOHI instrument. The MOHI instrument is capable of multiplexing interferometric measurements into 480 one-dimensional interferograms at a location on the sample and is built with axial and lateral resolutions of 40 μm at a maximum imaging depth of 700 μm. Preliminary results, where a piece of sand-blasted aluminum, an NBK7 glass piece, and an optical phantom were successfully probed using the MOHI instrument to produce depth profiles, demonstrate the feasibility of such an instrument for performing depth profilometry.

Estimating floodwater depths from flood inundation maps and topography

USGS Publications Warehouse

Cohen, Sagy; Brakenridge, G. Robert; Kettner, Albert; Bates, Bradford; Nelson, Jonathan M.; McDonald, Richard R.; Huang, Yu-Fen; Munasinghe, Dinuke; Zhang, Jiaqi

2018-01-01

Information on flood inundation extent is important for understanding societal exposure, water storage volumes, flood wave attenuation, future flood hazard, and other variables. A number of organizations now provide flood inundation maps based on satellite remote sensing. These data products can efficiently and accurately provide the areal extent of a flood event, but do not provide floodwater depth, an important attribute for first responders and damage assessment. Here we present a new methodology and a GIS-based tool, the Floodwater Depth Estimation Tool (FwDET), for estimating floodwater depth based solely on an inundation map and a digital elevation model (DEM). We compare the FwDET results against water depth maps derived from hydraulic simulation of two flood events, a large-scale event for which we use medium resolution input layer (10 m) and a small-scale event for which we use a high-resolution (LiDAR; 1 m) input. Further testing is performed for two inundation maps with a number of challenging features that include a narrow valley, a large reservoir, and an urban setting. The results show FwDET can accurately calculate floodwater depth for diverse flooding scenarios but also leads to considerable bias in locations where the inundation extent does not align well with the DEM. In these locations, manual adjustment or higher spatial resolution input is required.

Beam shaping optics to enhance performance of interferometry techniques in grating manufacture

NASA Astrophysics Data System (ADS)

Laskin, Alexander; Laskin, Vadim; Ostrun, Aleksei

2018-02-01

Improving of industrial holographic and interferometry techniques is of great importance in interference lithography, computer-generated holography, holographic data storage, interferometry recording of Bragg gratings as well as gratings of various types in semiconductor industry. Performance of mentioned techniques is essentially enhanced by providing a light beam with flat phase front and flat-top irradiance distribution. Therefore, transformation of Gaussian distribution of a TEM00 laser to flat-top (top hat, uniform) distribution is an important optical task. There are different refractive and diffractive beam shaping approaches used in laser industrial and scientific applications, but only few of them are capable to fulfil the optimum conditions for beam quality demanding holography and interferometry. As a solution it is suggested to apply refractive field mapping beam shaping optics πShaper, which operational principle presumes almost lossless transformation of Gaussian to flat-top beam with flatness of output wavefront, conserving of beam consistency, providing collimated low divergent output beam, high transmittance, extended depth of field, negligible wave aberration, and achromatic design provides capability to work with several lasers with different wavelengths simultaneously. High optical quality of resulting flat-top beam allows applying additional optical components to build various imaging optical systems for variation of beam size and shape to fulfil requirements of a particular application. This paper will describe design basics of refractive beam shapers and optical layouts of their applying in holography and laser interference lithography. Examples of real implementations and experimental results will be presented as well.

All-optical mapping of barrel cortex circuits based on simultaneous voltage-sensitive dye imaging and channelrhodopsin-mediated photostimulation

PubMed Central

Lo, Shun Qiang; Koh, Dawn X. P.; Sng, Judy C. G.; Augustine, George J.

2015-01-01

Abstract. We describe an experimental approach that uses light to both control and detect neuronal activity in mouse barrel cortex slices: blue light patterned by a digital micromirror array system allowed us to photostimulate specific layers and columns, while a red-shifted voltage-sensitive dye was used to map out large-scale circuit activity. We demonstrate that such all-optical mapping can interrogate various circuits in somatosensory cortex by sequentially activating different layers and columns. Further, mapping in slices from whisker-deprived mice demonstrated that chronic sensory deprivation did not significantly alter feedforward inhibition driven by layer 5 pyramidal neurons. Further development of voltage-sensitive optical probes should allow this all-optical mapping approach to become an important and high-throughput tool for mapping circuit interactions in the brain. PMID:26158003

Using passive fiber-optic distributed temperature sensing to estimate soil water content at a discontinuous permafrost site

NASA Astrophysics Data System (ADS)

Wagner, A. M.; Lindsey, N.; Ajo Franklin, J. B.; Gelvin, A.; Saari, S.; Ekblaw, I.; Ulrich, C.; Dou, S.; James, S. R.; Martin, E. R.; Freifeld, B. M.; Bjella, K.; Daley, T. M.

2016-12-01

We present preliminary results from an experimental study targeting the use of passive fiber-optic distributed temperature sensing (DTS) in a variety of geometries to estimate moisture content evolution in a dynamic permafrost system. A 4 km continuous 2D array of multi-component fiber optic cable (6 SM/6 MM) was buried at the Fairbanks Permafrost Experiment Station to investigate the possibility of using fiber optic distributed sensing as an early detection system for permafrost thaw. A heating experiment using 120 60 Watt heaters was conducted in a 140 m2 area to artificially thaw the topmost section of permafrost. The soils at the site are primarily silt but some disturbed areas include backfilled gravel to depths of approximately 1.0 m. Where permafrost exists, the depth to permafrost ranges from 1.5 to approximately 5 m. The experiment was also used to spatially estimate soil water content distribution throughout the fiber optic array. The horizontal fiber optic cable was buried at depths between 10 and 20 cm. Soil temperatures were monitored with a DTS system at 25 cm increments along the length of the fiber. At five locations, soil water content time-domain reflectometer (TDR) probes were also installed at two depths, in line with the fiber optic cable and 15 to 25 cm below the cable. The moisture content along the fiber optic array was estimated using diurnal effects from the dual depth temperature measurements. In addition to the horizontally installed fiber optic cable, vertical lines of fiber optic cable were also installed inside and outside the heater plot to a depth of 10 m in small diameter (2 cm) boreholes. These arrays were installed in conjunction with thermistor strings and are used to monitor the thawing process and to cross correlate with soil temperatures at the depth of the TDR probes. Results will be presented from the initiation of the artificial thawing through subsequent freeze-up. A comparison of the DTS measured temperatures and thermistors in vertically installed PVC pipes will also be shown. Initial results from a thermal model of the artificial heating experiment and the model's correlation to the actual soil temperature measurements will also be presented. These results show the possibility of using fiber optic cable to measure moisture contents along a longer array with only limited control points.

Severe Air Pollution in New Delhi View by NASA MISR

NASA Image and Video Library

2016-11-16

New Delhi, India's capital city, is currently suffering though a period of particularly poor air quality. In early November 2016, monitors at various locations in the area posted air quality index measurements as high as the 900s (the most severe ranking, "hazardous," is any air quality index measurement over 300). Thousands of schools have been closed, and a survey by the Associate Chambers of Commerce and Industry of India reports that 10 percent of the city's workers called in sick due to air-pollution-related health issues. According to several published news reports, the extreme air pollution may be due to a combination of nearby agricultural burning after harvest, urban construction and solid-waste burning, as well as remnants of firecracker smoke and additional car emissions after the celebration of Diwali, the Hindu festival of lights, on October 30. The Multi-angle Imaging SpectroRadiometer (MISR) instrument aboard NASA's Terra satellite passed over the region on Saturday, Nov. 5, 2016, at around 11:05 a.m. local time. At left is an image acquired from MISR's vertical viewing camera. The Himalayas stretch across the northern portion of the image. This towering mountain range tends to concentrate pollution in the region immediately to the south, including New Delhi, by preventing pollutants from blowing northwards. New Delhi, whose location is indicated on the image, is under a patch of especially thick haze. At 6:00 a.m. local time on that date, the U.S. Mission India NowCast Air Quality Index for New Delhi was reported at 751, more than twice the threshold for hazardous air quality. At right, a map of aerosol optical depth is superimposed on the image. Optical depth is a quantitative measure of the abundance of aerosols (tiny particles in the atmosphere). Optical depths for the area around New Delhi have not been calculated because the haze is so thick that the algorithm has classified the area as a cloud. In the region immediately surrounding the thick haze, optical depths approach 1.0. An optical depth of 1.0 means that only about 37 percent of direct sunlight reaches the surface due to interactions with particles in the atmosphere. These data were acquired during Terra orbit 89805. Other MISR data are available through the NASA Langley Research Center; for more information, go to https://eosweb.larc.nasa.gov/project/misr/misr_table. MISR was built and is managed by NASA's Jet Propulsion Laboratory, Pasadena, California, for NASA's Science Mission Directorate, Washington, D.C. The Terra spacecraft is managed by NASA's Goddard Space Flight Center, Greenbelt, Maryland. The MISR data were obtained from the NASA Langley Research Center Atmospheric Science Data Center, Hampton, Virginia. JPL is a division of the California Institute of Technology in Pasadena. http://photojournal.jpl.nasa.gov/catalog/PIA21100

An Optical Fibre Depth (Pressure) Sensor for Remote Operated Vehicles in Underwater Applications

PubMed Central

Duraibabu, Dinesh Babu; Poeggel, Sven; Omerdic, Edin; Capocci, Romano; Lewis, Elfed; Newe, Thomas; Leen, Gabriel; Toal, Daniel; Dooly, Gerard

2017-01-01

A miniature sensor for accurate measurement of pressure (depth) with temperature compensation in the ocean environment is described. The sensor is based on an optical fibre Extrinsic Fabry-Perot interferometer (EFPI) combined with a Fibre Bragg Grating (FBG). The EFPI provides pressure measurements while the Fibre Bragg Grating (FBG) provides temperature measurements. The sensor is mechanically robust, corrosion-resistant and suitable for use in underwater applications. The combined pressure and temperature sensor system was mounted on-board a mini remotely operated underwater vehicle (ROV) in order to monitor the pressure changes at various depths. The reflected optical spectrum from the sensor was monitored online and a pressure or temperature change caused a corresponding observable shift in the received optical spectrum. The sensor exhibited excellent stability when measured over a 2 h period underwater and its performance is compared with a commercially available reference sensor also mounted on the ROV. The measurements illustrates that the EFPI/FBG sensor is more accurate for depth measurements (depth of ~0.020 m). PMID:28218727

Fiber-optic annular detector array for large depth of field photoacoustic macroscopy.

PubMed

Bauer-Marschallinger, Johannes; Höllinger, Astrid; Jakoby, Bernhard; Burgholzer, Peter; Berer, Thomas

2017-03-01

We report on a novel imaging system for large depth of field photoacoustic scanning macroscopy. Instead of commonly used piezoelectric transducers, fiber-optic based ultrasound detection is applied. The optical fibers are shaped into rings and mainly receive ultrasonic signals stemming from the ring symmetry axes. Four concentric fiber-optic rings with varying diameters are used in order to increase the image quality. Imaging artifacts, originating from the off-axis sensitivity of the rings, are reduced by coherence weighting. We discuss the working principle of the system and present experimental results on tissue mimicking phantoms. The lateral resolution is estimated to be below 200 μm at a depth of 1.5 cm and below 230 μm at a depth of 4.5 cm. The minimum detectable pressure is in the order of 3 Pa. The introduced method has the potential to provide larger imaging depths than acoustic resolution photoacoustic microscopy and an imaging resolution similar to that of photoacoustic computed tomography.

Over-the-air in-band full-duplex system with hybrid RF optical and baseband digital self-interference cancellation

NASA Astrophysics Data System (ADS)

Zhang, Yunhao; Li, Longsheng; Bi, Meihua; Xiao, Shilin

2017-12-01

In this paper, we propose a hybrid analog optical self-interference cancellation (OSIC) and baseband digital SIC (DSIC) system for over-the-air in-band full-duplex (IBFD) wireless communication. Analog OSIC system is based on optical delay line, electro-absorption modulation lasers (EMLs) and balanced photodetector (BPD), which has the properties of high adjusting precision and broad processing bandwidth. With the help of baseband DSIC, the cancellation depth limitation of OSIC can be mitigated so as to achieve deeper total SIC depth. Experimental results show about 20-dB depth by OSIC and 10-dB more depth by DSIC over 1GHz broad baseband, so that the signal of interest (SOI) overlapped by wideband self-interference (SI) signal is better recovered compared to the IBFD system with OSIC or DSIC only. The hybrid of OSIC and DSIC takes advantages of the merits of optical devices and digital processors to achieve deep cancellation depth over broad bandwidth.

Remote measurement of river discharge using thermal particle image velocimetry (PIV) and various sources of bathymetric information

USGS Publications Warehouse

Legleiter, Carl; Kinzel, Paul J.; Nelson, Jonathan M.

2017-01-01

Although river discharge is a fundamental hydrologic quantity, conventional methods of streamgaging are impractical, expensive, and potentially dangerous in remote locations. This study evaluated the potential for measuring discharge via various forms of remote sensing, primarily thermal imaging of flow velocities but also spectrally-based depth retrieval from passive optical image data. We acquired thermal image time series from bridges spanning five streams in Alaska and observed strong agreement between velocities measured in situ and those inferred by Particle Image Velocimetry (PIV), which quantified advection of thermal features by the flow. The resulting surface velocities were converted to depth-averaged velocities by applying site-specific, calibrated velocity indices. Field spectra from three clear-flowing streams provided strong relationships between depth and reflectance, suggesting that, under favorable conditions, spectrally-based bathymetric mapping could complement thermal PIV in a hybrid approach to remote sensing of river discharge; this strategy would not be applicable to larger, more turbid rivers, however. A more flexible and efficient alternative might involve inferring depth from thermal data based on relationships between depth and integral length scales of turbulent fluctuations in temperature, captured as variations in image brightness. We observed moderately strong correlations for a site-aggregated data set that reduced station-to-station variability but encompassed a broad range of depths. Discharges calculated using thermal PIV-derived velocities were within 15% of in situ measurements when combined with depths measured directly in the field or estimated from field spectra and within 40% when the depth information also was derived from thermal images. The results of this initial, proof-of-concept investigation suggest that remote sensing techniques could facilitate measurement of river discharge.

Standoff determination of the particle size and concentration of small optical depth clouds based on double scattering measurements: concept and experimental validation with bioaerosols.

PubMed

Roy, Gilles; Roy, Nathalie

2008-03-20

A multiple-field-of-view (MFOV) lidar is used to characterize size and optical depth of low concentration of bioaerosol clouds. The concept relies on the measurement of the forward scattered light by using the background aerosols at various distances at the back of a subvisible cloud. It also relies on the subtraction of the background aerosol forward scattering contribution and on the partial attenuation of the first-order backscattering. The validity of the concept developed to retrieve the effective diameter and the optical depth of low concentration bioaerosol clouds with good precision is demonstrated using simulation results and experimental MFOV lidar measurements. Calculations are also done to show that the method presented can be extended to small optical depth cloud retrieval.

Spectral contrast-enhanced optical coherence tomography for improved detection of tumor microvasculature and functional imaging of lymphatic drainage

NASA Astrophysics Data System (ADS)

SoRelle, Elliott D.; Liba, Orly; Sen, Debasish; de la Zerda, Adam

2017-03-01

Optical Coherence Tomography (OCT) is well-suited to study in vivo dynamics of blood circulation and lymphatic flow because of the technique's combination of rapid image acquisition, micron spatial resolution, and penetration depth in turbid tissues. However, OCT has been historically constrained by a dearth of contrast agents that are readily distinguished from the strong scattering intrinsic to biological tissues. In this study, we demonstrate large gold nanorods (LGNRs) as optimized contrast agents for OCT. LGNRs produce 32-fold greater backscattering than GNRs previously tested for contrast-enhanced OCT. Furthermore, LGNRs exhibit 110-fold stronger spectral signal than conventional GNRs when coupled with custom spectral detection algorithms. This signal enhancement enables picomolar OCT detection sensitivity in vivo and single-particle detection against optically-clear backgrounds. Moreover, the ability to synthesize LGNRs with tunable spectral peaks provides a viable platform for multiplexed imaging studies. To explore the advantages of LGNRs as OCT contrast agents, we implemented them for noninvasive 3D imaging of tumor blood supply and active lymphatic drainage in mice. Spectral detection of LGNRs enabled 100% improvement in imaging depth for detecting microvasculature (vessels 20 μm in diameter) in U87MG glioblastoma xenografts in mice pinnae. We also demonstrated our approach's ability to map the spatial dependence of lymph drainage and flow directionality within lymphatic capillaries. Using LGNRs with distinct spectra, we further identified the functional states of individual lymphatic valves in vivo. Thus, this approach provides a powerful new platform for functional imaging that may be extended for future molecular imaging studies with OCT.

A New Optical Oxygen Sensor Reveals Spatial and Temporal Variations of Dissolved Oxygen at Ecohydrological Interfaces

NASA Astrophysics Data System (ADS)

Brandt, T.; Schmidt, C.; Fleckenstein, J. H.; Vieweg, M.; Harjung, A.

2015-12-01

The spatial and temporal distribution of dissolved oxygen (DO) at highly reactive aquatic interfaces, e.g. in the hyporheic zone (HZ), is a primary indicator of redox and interlinked biogeochemical zonations. However, continuous measuring of DO over time and depths is challenging due to the dynamic and potentially heterogenic nature of the HZ. We further developed a novel technology for spatially continuous in situ vertical oxygen profiling based on optical sensing (Vieweg et al, 2013). Continuous vertical measurements to a depth of 50 cm are obtained by the motor-controlled insertion of a side-firing Polymer Optical Fiber (POF) into tubular DO probes. Our technology allows minimally invasive DO measurements without DO consumption at high spatial resolution in the mm range. The reduced size of the tubular probe (diameter 5 mm) substantially minimizes disturbance of flow conditions. We tested our technology in situ in the HZ of an intermittent stream during the drying period. Repeated DO measurements were taken over a total duration of six weeks at two locations up- and downstream of a pool-cascade sequence. We were able to precisely map the spatial DO distribution which exhibited sharp gradients and rapid temporal changes as a function of changing hydrologic conditions. Our new vertical oxygen sensing technology will help to provide new insights to the coupling of transport of DO and biogeochemical reactions at aquatic interfaces. Vieweg, M., Trauth, N., Fleckenstein, J. H., Schmidt, C. (2013): Robust Optode-Based Method for Measuring in Situ Oxygen Profiles in Gravelly Streambeds. Environmental Science & Technology. doi:10.1021/es401040w

Optical properties of boreal region biomass burning aerosols in central Alaska and seasonal variation of aerosol optical depth at an Arctic coastal site

Treesearch

T.F. Eck; B.N. Holben; J.S. Reid; A. Sinyuk; E.J. Hyer; N.T. O' Neill; G.E. Shaw; J.R. Vande Castle; F.S. Chapin; O. Dubovik; A. Smirnov; E. Vermote; J.S. Schafer; D. Giles; I. Slutsker; M. Sorokine; W.W. Newcomb

2009-01-01

Long-term monitoring of aerosol optical properties at a boreal forest AERONET site in interior Alaska was performed from 1994 through 2008 (excluding winter), Large interannual variability was observed, with some years showing near background aerosol optical depth (AOD) levels while 2004 and 2005 had August monthly means similar in magnitude to peak months at major...

Depth probing of the hydride formation process in thin Pd films by combined electrochemistry and fiber optics-based in situ UV/vis spectroscopy.

PubMed

Wickman, Björn; Fredriksson, Mattias; Feng, Ligang; Lindahl, Niklas; Hagberg, Johan; Langhammer, Christoph

2015-07-15

We demonstrate a flexible combined electrochemistry and fiber optics-based in situ UV/vis spectroscopy setup to gain insight into the depth evolution of electrochemical hydride and oxide formation in Pd films with thicknesses of 20 and 100 nm. The thicknesses of our model systems are chosen such that the films are thinner or significantly thicker than the optical skin depth of Pd to create two distinctly different situations. Low power white light is irradiated on the sample and analyzed in three different configurations; transmittance through, and, reflectance from the front and the back side of the film. The obtained optical sensitivities correspond to fractions of a monolayer of adsorbed or absorbed hydrogen (H) and oxygen (O) on Pd. Moreover, a combined simultaneous readout obtained from the different optical measurement configurations provides mechanistic insights into the depth-evolution of the studied hydrogenation and oxidation processes.

Validation of stratospheric aerosol and gas experiments 1 and 2 satellite aerosol optical depth measurements using surface radiometer data

NASA Technical Reports Server (NTRS)

Kent, G. S.; Mccormick, M. P.; Wang, P.-H.

1994-01-01

The stratospheric aerosol measurement 2, stratospheric aerosol and gas experiment (SAGE) 1, and SAGE 2 series of solar occultation satellite instruments were designed for the study of stratospheric aerosols and gases and have been extensively validated in the stratosphere. They are also capable, under cloud-free conditions, of measuring the extinction due to aerosols in the troposphere. Such tropospheric extinction measurements have yet to be validated by appropriate lidar and in situ techniques. In this paper published atmospheric aerosol optical depth measurements, made from high-altitude observatories during volcanically quiet periods, have been compared with optical depths calculated from local SAGE 1 and SAGE 2 extinction profiles. Surface measurements from three such observatories have been used, one located in Hawaii and two within the continental United States. Data have been intercompared on a seasonal basis at wave-lenths between 0.5 and 1.0 micron and found to agree within the range of measurement errors and expected atmospheric variation. The mean rms difference between the optical depths for corresponding satellite and surface measured data sets is 29%, and the mean ratio of the optical depths is 1.09.

Cloud Optical Depths and Liquid Water Paths at the NSA CART

DOE Office of Scientific and Technical Information (OSTI.GOV)

Doran, J C.; Barnard, James C.; Zhong, Shiyuan

2000-03-14

Cloud optical depths have been measured using multifilter rotating shadowband radiometers (MFRSRs) at Barrow and Atqasuk, and liquid water paths have been measured at Barrow using a microwave radiometer (MWR) during the warm season (June-September) in 1999. Comparisons have been made between these quantities and the corresponding ones determined from the ECMWF GCM. Hour-by-hour comparisons of cloud optical depths show considerable scatter. The scatter is reduced, but is still substantial, when the averaging period is increased to ''daily'' averages, i.e., the time period each day over which the MFRSR can make measurements. This period varied between 18 hours in Junemore » and 6 hours in September. Preliminary results indicate that, for measured cloud optical depths less than approximately 25, the ECMWF has a low bias in its predictions, consistent with a low bias in predicted liquid water path. Based on a more limited set of data, the optical depths at Atqasuk were found to be generally lower than those at Barrow, a trend at least qualitatively captured by the ECMWF model. Analyses to identify the cause of the biases and the considerable scatter in the predictions are continuing.« less

An analysis of haze effects on LANDSAT multispectral scanner data

NASA Technical Reports Server (NTRS)

Johnson, W. R.; Sestak, M. L. (Principal Investigator)

1981-01-01

Early season changes in optical depth change brightness, primarily along the soil line; and during crop development, changes in optical depth change both greenness and brightness. Thus, the existence of haze in the imagery could cause an unsuspecting analyst to interpret the spectral appearance as indicating an episodal event when, in fact, haze was present. The techniques for converting LANDSAT-3 data to simulate LANDSAT-2 data are in error. The yellowness and none such computations are affected primarily. Yellowness appears well correlated to optical depth. Experimental evidence with variable background and variable optical depth is needed, however. The variance of picture elements within a spring wheat field is related to its equivalent in optical depth changes caused by haze. This establishes the sensitivity of channel 1 (greenness) pixels to changes in haze levels. The between field picture element means and variances were determined for the spring wheat fields. This shows the variability of channel data on two specific dates, emphasizing that crop development can be influenced by many factors. The atmospheric correction program ATCOR reduces segment data from LANDSAT acquisitions to a common haze level and improves the results of analysis.

[Study on the change of optical zone after femtosecond laser assisted laser in situ keratomileusis].

PubMed

Li, H; Chen, M; Tian, L; Li, D W; Peng, Y S; Zhang, F F

2018-01-11

Objective: To explore the change of optical zone after femtosecond laser assisted laser in sitn keratomileusis(FS-LASIK) so as to provide the reference for measurement and design of clinical optical zone. Methods: This retrospective case series study covers 41 eyes of 24 patients (7 males and 17 females, aged from 18 to 42 years old) with myopia and myopic astigmatism who have received FS-LASIK surgery at Corneal Refractive Department of Qingdao Eye Hospital and completed over 6 months of clinical follow-up. Pentacam system (with the application of 6 corneal topographic map modes including: the pure axial curvature topographic map, the pure tangential curvature topographic map, the axial curvature difference topographic map, the tangential curvature difference topographic map, the postoperative front elevation map and the corneal thickness difference topographic map), combined with transparent concentric software (a system independently developed by Qingdao Eye Hospital) was used to measure the optical zone at 1, 3 and 6 months postoperatively, the optical zone diameters measurement results among different follow-up times in group were analyzed with the repeated measures analysis of variance, and the actual measured values and the theoretical design values of the optical zone were analyzed with independent-samples t-testing. Spearman correlation coefficient ( r(s) ) have been applied to evaluate the relationship between postoperative optical zone measurement values and the potential influencing factors. Results: The optical zone diameters measured by pure axial curvature topographic map at 1, 3 and 6 months after FS-LASIK showed (6.55±0.50)mm, (6.50±0.53)mm and (6.48±0.53)mm respectively. The differences between values are of no statistical significance ( F= 1.60, P= 0.21), the optical zone diameter measured by pure tangential curvature topographic map at 1, 3 and 6 months after FS-LASIK showed (5.44±0.46)mm, (5.46±0.52)mm and (5.44±0.50)mm respectively, the differences between values are of no statistical significance ( F= 0.17, P= 0.85). The optical zone diameters measured by postoperative front elevation map at 1, 3 and 6 months after FS-LASIK showed (5.06±0.28)mm, (5.12±0.32)mm and (5.17±0.28)mm respectively. The differences between the values of 3 and 6 months postoperatively are of no statistical significance ( F= 6.14, P= 0.15), the optical zone diameters measured by axial curvature difference topographic map at 1, 3 and 6 months after FS-LASIK showed (6.51±0.37)mm, (6.45±0.41)mm and (6.41±0.40)mm respectively, and the differences between the values of 3 and 6 months postoperatively are of no statistical significance ( F= 7.25, P= 0.05). The optical zone diameters measured by tangential curvature difference topographic map at 1, 3 and 6 months after FS-LASIK showed (5.21±0.23)mm, (5.16±0.19)mm and (5.17±0.20) mm respectively, and the differences between the values of 1 and 3 months postoperatively are of statistical significance ( F= 1.75, P= 0.04). The optical zone diameters measured by corneal thickness difference topographic map at 1, 3 and 6 months after FS-LASIK showed (6.53±0.40)mm, (6.39±0.43)mm and (6.41±0.47)mm respectively, and the differences between the values of 1 and 3 months postoperatively are of statistical significance ( F= 1.67, P= 0.032). The actual measured optical zone values from the 6 different modes of Pentacam system are less than the theoretical design values (7.75 mm), and the differences were statistical significance ( t= -15.42, -29.39, -59.27, -21.47, -81.69, -18.22, P< 0.01). Conclusions: The optical zone measurement values tend to be stable at 3 months after FS-LASIK. The actual measured values from all the 6 different modes of Pentacam system were less than the theoretical design values. The results from pure tangential curvature topographic map, the tangential curvature difference topographic map and the postoperative front elevation map showed greater variation with clear border, which was beneficial for eccentric research. The results from pure axial curvature topographic map, the axial curvature difference topographic map and the corneal thickness difference topographic map were close to the theoretically designed values. Furthermore, the axial curvature difference topographic map showed clearer border and less variation thus maybe more favorable for measuring optical zone in clinical application. (Chin J Ophthalmol, 2018, 54: 39-47) .

Using optical mapping data for the improvement of vertebrate genome assemblies.

PubMed

Howe, Kerstin; Wood, Jonathan M D

2015-01-01

Optical mapping is a technology that gathers long-range information on genome sequences similar to ordered restriction digest maps. Because it is not subject to cloning, amplification, hybridisation or sequencing bias, it is ideally suited to the improvement of fragmented genome assemblies that can no longer be improved by classical methods. In addition, its low cost and rapid turnaround make it equally useful during the scaffolding process of de novo assembly from high throughput sequencing reads. We describe how optical mapping has been used in practice to produce high quality vertebrate genome assemblies. In particular, we detail the efforts undertaken by the Genome Reference Consortium (GRC), which maintains the reference genomes for human, mouse, zebrafish and chicken, and uses different optical mapping platforms for genome curation.

Restoration of distorted depth maps calculated from stereo sequences

NASA Technical Reports Server (NTRS)

Damour, Kevin; Kaufman, Howard

1991-01-01

A model-based Kalman estimator is developed for spatial-temporal filtering of noise and other degradations in velocity and depth maps derived from image sequences or cinema. As an illustration of the proposed procedures, edge information from image sequences of rigid objects is used in the processing of the velocity maps by selecting from a series of models for directional adaptive filtering. Adaptive filtering then allows for noise reduction while preserving sharpness in the velocity maps. Results from several synthetic and real image sequences are given.

The suitability of lightfield camera depth maps for coordinate measurement applications

NASA Astrophysics Data System (ADS)

Rangappa, Shreedhar; Tailor, Mitul; Petzing, Jon; Kinnell, Peter; Jackson, Michael

2015-12-01

Plenoptic cameras can capture 3D information in one exposure without the need for structured illumination, allowing grey scale depth maps of the captured image to be created. The Lytro, a consumer grade plenoptic camera, provides a cost effective method of measuring depth of multiple objects under controlled lightning conditions. In this research, camera control variables, environmental sensitivity, image distortion characteristics, and the effective working range of two Lytro first generation cameras were evaluated. In addition, a calibration process has been created, for the Lytro cameras, to deliver three dimensional output depth maps represented in SI units (metre). The novel results show depth accuracy and repeatability of +10.0 mm to -20.0 mm, and 0.5 mm respectively. For the lateral X and Y coordinates, the accuracy was +1.56 μm to -2.59 μm and the repeatability was 0.25 μm.

Direct determination of surface albedos from satellite imagery

NASA Technical Reports Server (NTRS)

Mekler, Y.; Joseph, J. H.

1983-01-01

An empirical method to measure the spectral surface albedo of surfaces from Landsat imagery is presented and analyzed. The empiricism in the method is due only to the fact that three parameters of the solution must be determined for each spectral photograph of an image on the basis of independently known albedos at three points. The approach is otherwise based on exact solutions of the radiative transfer equation for upwelling intensity. Application of the method allows the routine construction of spectral albedo maps from satelite imagery, without requiring detailed knowledge of the atmospheric aerosol content, as long as the optical depth is less than 0.75, and of the calibration of the satellite sensor.

Laser interferometric measurement of ion electrode shape and charge exchange erosion

NASA Technical Reports Server (NTRS)

Macrae, Gregory S.; Mercer, Carolyn R.

1991-01-01

A projected fringe profilometry system was applied to surface contour measurements of an accelerator electrode from an ion thrustor. The system permitted noncontact, nondestructive evaluation of the fine and gross structure of the electrode. A 3-D surface map of a dished electrode was generated without altering the electrode surface. The same system was used to examine charge exchange erosion pits near the periphery of the electrode to determine the depth, location, and volume of material lost. This electro-optical measurement system allowed rapid, nondestructive, digital data acquisition coupled with automated computer data processing. In addition, variable sensitivity allowed both coarse and fine measurements of objects having various surface finishes.

Combined Use of Satellite and Surface Observations to Infer the Imaginary Part of Refractive Index of Saharan Dust

NASA Technical Reports Server (NTRS)

Sinyuk, Alexander; Torres, Omar; Dubovik, Oleg; Bhartia, P. K. (Technical Monitor)

2002-01-01

We present a method for retrieval of the imaginary part of refractive index of desert dust aerosol in the near UV part of spectrum. The method uses Total Ozone Mapping Spectrometer (TOMS) measurements of the top of the atmosphere radiances at 331 and 360 run and aerosol optical depth provided by the Aerosol Robotic Network (AERONET). Obtained values of imaginary part of refractive index retrieved for Saharan dust aerosol at 360 nm are significantly lower than previously reported values. The average retrieved values vary between 0.0054 and 0.0066 for different geographical locations. Our findings are in good agreement with the results of several recent investigations.

FIBER AND INTEGRATED OPTICS, LASER APPLICATIONS, AND OTHER PROBLEMS IN QUANTUM ELECTRONICS: Optical components for the analysis and formation of the transverse mode composition

NASA Astrophysics Data System (ADS)

Golub, M. A.; Sisakyan, I. N.; Soĭfer, V. A.; Uvarov, G. V.

1989-04-01

Theoretical and experimental investigations are reported of new mode optical components (elements) which are analogs of sinusoidal phase diffraction gratings with a variable modulation depth. Expressions are derived for nonlinear predistortion and depth of modulation, which are essential for effective operation of amplitude and phase mode optical components in devices used for analysis and formation of the transverse mode composition of coherent radiation. An estimate is obtained of the energy efficiency of phase and amplitude mode optical components, and a comparison is made with the results of an experimental investigation of a set of phase optical components matched to Gauss-Laguerre modes. It is shown that the improvement in the energy efficiency of phase mode components, compared with amplitude components, is the same as the improvement achieved using a phase diifraction grating, compared with amplitude grating with the same depth of modulation.

Spectrally-Based Bathymetric Mapping of a Dynamic, Sand-Bedded Channel: Niobrara River, Nebraska, USA

NASA Astrophysics Data System (ADS)

Dilbone, Elizabeth K.

Methods for spectrally-based bathymetric mapping of rivers mainly have been developed and tested on clear-flowing, gravel bedded channels, with limited application to turbid, sand-bedded rivers. Using hyperspectral images of the Niobrara River, Nebraska, and field-surveyed depth data, this study evaluated three methods of retrieving depth from remotely sensed data in a dynamic, sand-bedded channel. The first regression-based approach paired in situ depth measurements and image pixel values to predict depth via Optimal Band Ratio Analysis (OBRA). The second approach used ground-based reflectance measurements to calibrate an OBRA relationship. For this approach, CASI images were atmospherically corrected to units of apparent surface reflectance using an empirical line calibration. For the final technique, we used Image-to-Depth Quantile Transformation (IDQT) to predict depth by linking the cumulative distribution function (CDF) of depth to the CDF of an image derived variable. OBRA yielded the lowest overall depth retrieval error (0.0047 m) and highest observed versus predicted R2 (0.81). Although misalignment between field and image data were not problematic to OBRA's performance in this study, such issues present potential limitations to standard regression-based approaches like OBRA in dynamic, sand-bedded rivers. Field spectroscopy-based maps exhibited a slight shallow bias (0.0652 m) but provided reliable depth estimates for most of the study reach. IDQT had a strong deep bias, but still provided informative relative depth maps that portrayed general patterns of shallow and deep areas of the channel. The over-prediction of depth by IDQT highlights the need for an unbiased sampling strategy to define the CDF of depth. While each of the techniques tested in this study demonstrated the potential to provide accurate depth estimates in sand-bedded rivers, each method also was subject to certain constraints and limitations.

Automatic Depth Extraction from 2D Images Using a Cluster-Based Learning Framework.

PubMed

Herrera, Jose L; Del-Blanco, Carlos R; Garcia, Narciso

2018-07-01

There has been a significant increase in the availability of 3D players and displays in the last years. Nonetheless, the amount of 3D content has not experimented an increment of such magnitude. To alleviate this problem, many algorithms for converting images and videos from 2D to 3D have been proposed. Here, we present an automatic learning-based 2D-3D image conversion approach, based on the key hypothesis that color images with similar structure likely present a similar depth structure. The presented algorithm estimates the depth of a color query image using the prior knowledge provided by a repository of color + depth images. The algorithm clusters this database attending to their structural similarity, and then creates a representative of each color-depth image cluster that will be used as prior depth map. The selection of the appropriate prior depth map corresponding to one given color query image is accomplished by comparing the structural similarity in the color domain between the query image and the database. The comparison is based on a K-Nearest Neighbor framework that uses a learning procedure to build an adaptive combination of image feature descriptors. The best correspondences determine the cluster, and in turn the associated prior depth map. Finally, this prior estimation is enhanced through a segmentation-guided filtering that obtains the final depth map estimation. This approach has been tested using two publicly available databases, and compared with several state-of-the-art algorithms in order to prove its efficiency.

Estimates of the Spectral Aerosol Single Sea Scattering Albedo and Aerosol Radiative Effects during SAFARI 2000

NASA Technical Reports Server (NTRS)

Bergstrom, Robert W.; Pilewskie, Peter; Schmid, Beat; Russell, Philip B.

2003-01-01

Using measurements of the spectral solar radiative flux and optical depth for 2 days (24 August and 6 September 2000) during the SAFARI 2000 intensive field experiment and a detailed radiative transfer model, we estimate the spectral single scattering albedo of the aerosol layer. The single scattering albedo is similar on the 2 days even though the optical depth for the aerosol layer was quite different. The aerosol single scattering albedo was between 0.85 and 0.90 at 350 nm, decreasing to 0.6 in the near infrared. The magnitude and decrease with wavelength of the single scattering albedo are consistent with the absorption properties of small black carbon particles. We estimate the uncertainty in the single scattering albedo due to the uncertainty in the measured fractional absorption and optical depths. The uncertainty in the single scattering albedo is significantly less on the high-optical-depth day (6 September) than on the low-optical-depth day (24 August). On the high-optical-depth day, the uncertainty in the single scattering albedo is 0.02 in the midvisible whereas on the low-optical-depth day the uncertainty is 0.08 in the midvisible. On both days, the uncertainty becomes larger in the near infrared. We compute the radiative effect of the aerosol by comparing calculations with and without the aerosol. The effect at the top of the atmosphere (TOA) is to cool the atmosphere by 13 W/sq m on 24 August and 17 W/sq m on 6 September. The effect on the downward flux at the surface is a reduction of 57 W/sq m on 24 August and 200 W/sq m on 6 September. The aerosol effect on the downward flux at the surface is in good agreement with the results reported from the Indian Ocean Experiment (INDOEX).

Single-molecule optical genome mapping of a human HapMap and a colorectal cancer cell line.

PubMed

Teo, Audrey S M; Verzotto, Davide; Yao, Fei; Nagarajan, Niranjan; Hillmer, Axel M

2015-01-01

Next-generation sequencing (NGS) technologies have changed our understanding of the variability of the human genome. However, the identification of genome structural variations based on NGS approaches with read lengths of 35-300 bases remains a challenge. Single-molecule optical mapping technologies allow the analysis of DNA molecules of up to 2 Mb and as such are suitable for the identification of large-scale genome structural variations, and for de novo genome assemblies when combined with short-read NGS data. Here we present optical mapping data for two human genomes: the HapMap cell line GM12878 and the colorectal cancer cell line HCT116. High molecular weight DNA was obtained by embedding GM12878 and HCT116 cells, respectively, in agarose plugs, followed by DNA extraction under mild conditions. Genomic DNA was digested with KpnI and 310,000 and 296,000 DNA molecules (≥ 150 kb and 10 restriction fragments), respectively, were analyzed per cell line using the Argus optical mapping system. Maps were aligned to the human reference by OPTIMA, a new glocal alignment method. Genome coverage of 6.8× and 5.7× was obtained, respectively; 2.9× and 1.7× more than the coverage obtained with previously available software. Optical mapping allows the resolution of large-scale structural variations of the genome, and the scaffold extension of NGS-based de novo assemblies. OPTIMA is an efficient new alignment method; our optical mapping data provide a resource for genome structure analyses of the human HapMap reference cell line GM12878, and the colorectal cancer cell line HCT116.

Beam shaping in high-power laser systems with using refractive beam shapers

NASA Astrophysics Data System (ADS)

Laskin, Alexander; Laskin, Vadim

2012-06-01

Beam Shaping of the spatial (transverse) profile of laser beams is highly desirable by building optical systems of high-power lasers as well in various applications with these lasers. Pumping of the crystals of Ti:Sapphire lasers by the laser radiation with uniform (flattop) intensity profile improves performance of these ultrashort pulse high-power lasers in terms of achievable efficiency, peak-power and stability, output beam profile. Specifications of the solid-state lasers built according to MOPA configuration can be also improved when radiation of the master oscillator is homogenized and then is amplified by the power amplifier. Features of building these high power lasers require that a beam shaping solution should be capable to work with single mode and multimode beams, provide flattop and super-Gauss intensity distributions, the consistency and divergence of a beam after the intensity re-distribution should be conserved and low absorption provided. These specific conditions are perfectly fulfilled by the refractive field mapping beam shapers due to their unique features: almost lossless intensity profile transformation, low output divergence, high transmittance and flatness of output beam profile, extended depth of field, adaptability to real intensity profiles of TEM00 and multimode laser sources. Combining of the refractive field mapping beam shapers with other optical components, like beam-expanders, relay imaging lenses, anamorphic optics makes it possible to generate the laser spots of necessary shape, size and intensity distribution. There are plenty of applications of high-power lasers where beam shaping bring benefits: irradiating photocathode of Free Electron Lasers (FEL), material ablation, micromachining, annealing in display making techniques, cladding, heat treating and others. This paper will describe some design basics of refractive beam shapers of the field mapping type, with emphasis on the features important for building and applications of high-power laser sources. There will be presented results of applying the refractive beam shapers in real installations.

Correction techniques for depth errors with stereo three-dimensional graphic displays

NASA Technical Reports Server (NTRS)

Parrish, Russell V.; Holden, Anthony; Williams, Steven P.

1992-01-01

Three-dimensional (3-D), 'real-world' pictorial displays that incorporate 'true' depth cues via stereopsis techniques have proved effective for displaying complex information in a natural way to enhance situational awareness and to improve pilot/vehicle performance. In such displays, the display designer must map the depths in the real world to the depths available with the stereo display system. However, empirical data have shown that the human subject does not perceive the information at exactly the depth at which it is mathematically placed. Head movements can also seriously distort the depth information that is embedded in stereo 3-D displays because the transformations used in mapping the visual scene to the depth-viewing volume (DVV) depend intrinsically on the viewer location. The goal of this research was to provide two correction techniques; the first technique corrects the original visual scene to the DVV mapping based on human perception errors, and the second (which is based on head-positioning sensor input data) corrects for errors induced by head movements. Empirical data are presented to validate both correction techniques. A combination of the two correction techniques effectively eliminates the distortions of depth information embedded in stereo 3-D displays.

Measurement of aerosol optical depth in the Atlantic Ocean and Mediterranean Sea

NASA Astrophysics Data System (ADS)

Smirnov, Alexander; Yershov, Oleg; Villevalde, Yuri

1995-12-01

A brief summary of aerosol optical depth measurements in a maritime atmosphere during the last three decades is presented. The results of more than fifty publications have been analyzed and are summarized in a single table. New results of spectral aerosol optical depth measurements (from 440 to 1030 nm) in the Mediterranean Sea and Atlantic Ocean made from aboard a research vessel are also presented. Comparison of aerosol optical depths obtained over the Mediterranean Sea in the winter 1989-1990 with other Mediterranean data indicate substantial seasonal difference. The angstrom parameter values for the central and western Atlantic indicate good agreement with the results obtained for the north Atlantic. The measurements in the subtropical Atlantic region show significant variations. The pure atmosphere in the winter 1989-1990 evolved in the fall of 1991 into very turbid conditions which were probably associated with Saharan dust.

Constraining the CMB optical depth through the dispersion measure of cosmological radio transients

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fialkov, A.; Loeb, A., E-mail: anastasia.fialkov@cfa.harvard.edu, E-mail: aloeb@cfa.harvard.edu

2016-05-01

The dispersion measure of extragalactic radio transients can be used to measure the column density of free electrons in the intergalactic medium. The same electrons also scatter the Cosmic Microwave Background (CMB) photons, affecting precision measurements of cosmological parameters. We explore the connection between the dispersion measure of radio transients existing during the Epoch of Reionization (EoR) and the total optical depth for the CMB showing that the existence of such transients would provide a new sensitive probe of the CMB optical depth. As an example, we consider the population of FRBs. Assuming they exist during the EoR, we showmore » that: (i) such sources can probe the reionization history by measuring the optical depth to sub-percent accuracy, and (ii) they can be detected with high significance by an instrument such as the Square Kilometer Array.« less

Validation of MODIS Aerosol Optical Depth Retrieval Over Land

NASA Technical Reports Server (NTRS)

Chu, D. A.; Kaufman, Y. J.; Ichoku, C.; Remer, L. A.; Tanre, D.; Holben, B. N.; Einaudi, Franco (Technical Monitor)

2001-01-01

Aerosol optical depths are derived operationally for the first time over land in the visible wavelengths by MODIS (Moderate Resolution Imaging Spectroradiometer) onboard the EOSTerra spacecraft. More than 300 Sun photometer data points from more than 30 AERONET (Aerosol Robotic Network) sites globally were used in validating the aerosol optical depths obtained during July - September 2000. Excellent agreement is found with retrieval errors within (Delta)tau=+/- 0.05 +/- 0.20 tau, as predicted, over (partially) vegetated surfaces, consistent with pre-launch theoretical analysis and aircraft field experiments. In coastal and semi-arid regions larger errors are caused predominantly by the uncertainty in evaluating the surface reflectance. The excellent fit was achieved despite the ongoing improvements in instrument characterization and calibration. This results show that MODIS-derived aerosol optical depths can be used quantitatively in many applications with cautions for residual clouds, snow/ice, and water contamination.

An efficient depth map preprocessing method based on structure-aided domain transform smoothing for 3D view generation

PubMed Central

Ma, Liyan; Qiu, Bo; Cui, Mingyue; Ding, Jianwei

2017-01-01

Depth image-based rendering (DIBR), which is used to render virtual views with a color image and the corresponding depth map, is one of the key techniques in the 2D to 3D conversion process. Due to the absence of knowledge about the 3D structure of a scene and its corresponding texture, DIBR in the 2D to 3D conversion process, inevitably leads to holes in the resulting 3D image as a result of newly-exposed areas. In this paper, we proposed a structure-aided depth map preprocessing framework in the transformed domain, which is inspired by recently proposed domain transform for its low complexity and high efficiency. Firstly, our framework integrates hybrid constraints including scene structure, edge consistency and visual saliency information in the transformed domain to improve the performance of depth map preprocess in an implicit way. Then, adaptive smooth localization is cooperated and realized in the proposed framework to further reduce over-smoothness and enhance optimization in the non-hole regions. Different from the other similar methods, the proposed method can simultaneously achieve the effects of hole filling, edge correction and local smoothing for typical depth maps in a united framework. Thanks to these advantages, it can yield visually satisfactory results with less computational complexity for high quality 2D to 3D conversion. Numerical experimental results demonstrate the excellent performances of the proposed method. PMID:28407027

Optical coherence tomography and optical coherence domain reflectometry for deep brain stimulation probe guidance

NASA Astrophysics Data System (ADS)

Jeon, Sung W.; Shure, Mark A.; Baker, Kenneth B.; Chahlavi, Ali; Hatoum, Nagi; Turbay, Massud; Rollins, Andrew M.; Rezai, Ali R.; Huang, David

2005-04-01

Deep Brain Stimulation (DBS) is FDA-approved for the treatment of Parkinson's disease and essential tremor. Currently, placement of DBS leads is guided through a combination of anatomical targeting and intraoperative microelectrode recordings. The physiological mapping process requires several hours, and each pass of the microelectrode into the brain increases the risk of hemorrhage. Optical Coherence Domain Reflectometry (OCDR) in combination with current methodologies could reduce surgical time and increase accuracy and safety by providing data on structures some distance ahead of the probe. For this preliminary study, we scanned a rat brain in vitro using polarization-insensitive Optical Coherence Tomography (OCT). For accurate measurement of intensity and attenuation, polarization effects arising from tissue birefringence are removed by polarization diversity detection. A fresh rat brain was sectioned along the coronal plane and immersed in a 5 mm cuvette with saline solution. OCT images from a 1294 nm light source showed depth profiles up to 2 mm. Light intensity and attenuation rate distinguished various tissue structures such as hippocampus, cortex, external capsule, internal capsule, and optic tract. Attenuation coefficient is determined by linear fitting of the single scattering regime in averaged A-scans where Beer"s law is applicable. Histology showed very good correlation with OCT images. From the preliminary study using OCT, we conclude that OCDR is a promising approach for guiding DBS probe placement.

A New 3D Map of Milky Way Dust

NASA Astrophysics Data System (ADS)

Green, Gregory Maurice; Schlafly, Edward; Finkbeiner, Douglas

2018-01-01

Interstellar dust is an important foreground for observations across a wide range of wavelengths. Dust grains scatter and absorb UV, optical and near-infrared light. These processes heat dust grains, causing them to radiate in the far-infrared. As a tracer of mass in the interstellar medium, dust correlates strongly with diffuse gamma-ray emission generated by cosmic-ray pion production. Thus, while dust makes up just 1% of the mass of the interstellar medium, it plays an outsize role in our efforts to address questions as diverse as the chemical evolution of the Milky Way galaxy and the existence of primordial B-mode polarizations in the CMB.We present a new 3D map of Milky Way dust, covering three-quarters of the sky (δ > -30°). The map is based on high-quality photometry of more than 800 million stars observed by Pan-STARRS 1, with matched photometry from 2MASS for approximately 200 million stars. We infer the distribution of dust vs. distance along sightlines with a typical angular scale of 6'. Out of the midplane of the Galaxy, our map agrees well with 2D maps based on far-infrared dust emission. After accounting for a 15% difference in scale, we find a mean scatter of approximately 10% between our map and the Planck 2D dust map, out to a depth of 0.8 mag in E(r-z). Our map can be downloaded at http://argonaut.skymaps.info.In order to extend our map, we have surveyed the southern Galactic plane with DECam, which is mounted on the 4m Blanco telescope on Cerro Tololo. The resulting survey, the Dark Energy Camera Plane Survey (DECaPS), is now publicly available. See Edward Schlafly's poster for more information on DECaPS.

Monitoring Atmospheric Dust Opacity at High Latitudes on Mars by Imaging Spectroscopy

NASA Astrophysics Data System (ADS)

Doute, S.; Vincendon, M.; Langevin, Y.; Spiga, A.; Bibring, J.; OMEGA Team

2010-12-01

Micrometer sized mineral particles drifting over Mars surface greatly influence both solar and thermal radiative fluxes in the atmosphere, thus its energy balance and its global circulation. Furthermore any kind of remotely sensed data in the optical domain includes their strong, spatially varying, often annoying contributions. Monitoring the particles as well as identifying the sources and the sinks in relation with surface activity is of paramount importance. Since 2004 and 2006 respectively, the imaging spectrometers OMEGA@MEX and CRISM@MRO perform nadir-looking and EPF observations in the VIS and the NIR for the study of the surface and atmosphere alike. We propose an original method to retrieve the optical depth τ dust of the Martian dust over the targeted scenes at a reference wavelength of one micron. Our method works even if the underlying surface is completely made of minerals (low contrast between surface and atmospheric dust) while being observed at a fixed geometry. Nevertheless it provides the maximum of information when applied to spectra acquired over the same area at different emergence angles. The method is based on a parametrization of the radiative coupling between particles and gas that determines, with local altimetry and the meteorological situation, the absorption band depth of gaseous CO2. The coupling depends on (i) the acquisition geometry (ii) the type, abundance and vertical distribution of particles (iii) the surface albedo As. For each spectro-pixel of an image, comparison of band depths estimated on the one hand from the observed spectrum and on the other hand from a calculated transmission spectrum through the atmospheric gases alone, one can build a precious new observable that directly depends on τ dust. Combining the latter with the radiance factor in the continuum, we evaluate after LUT inversion τ dust and As. After validation on test images, we have applied the present method - associated with a complementary approach proposed by [1] - in order to map dust abundance at high southern latitudes from early to late spring of MY 27 and 28. For that purpose we use a time series of OMEGA images for global coverage associated with a limited number of more spatially focused CRISM observations to determine the scale height of dust vertical distribution. As a result, we obtain de-trended and extended maps that are corrected for changes of optical depth due to varying atmospheric height because of topography. They clearly show dust activity within and around the area covered by the CO2 seasonal deposits. Atmospheric mineral particles are clearly depleted above the latter compared to the surroundings, even if occasional incursions of dusty clouds can occur. We note sudden, strong and spatially localized enhancements of dust opacity that can be traced as they migrate before disappearance. [1] Vincendon et al. JGR 2008

Five Micron High Resolution MALDI Mass Spectrometry Imaging with Simple, Interchangeable, Multi-Resolution Optical System

DOE PAGES

Feenstra, Adam D.; Dueñas, Maria Emilia; Lee, Young Jin

2017-01-03

High-spatial resolution mass spectrometry imaging (MSI) is crucial for the mapping of chemical distributions at the cellular and subcellular level. Here in this work, we improved our previous laser optical system for matrix-assisted laser desorption ionization (MALDI)-MSI, from ~9 μm practical laser spot size to a practical laser spot size of ~4 μm, thereby allowing for 5 μm resolution imaging without oversampling. This is accomplished through a combination of spatial filtering, beam expansion, and reduction of the final focal length. Most importantly, the new laser optics system allows for simple modification of the spot size solely through the interchanging ofmore » the beam expander component. Using 10×, 5×, and no beam expander, we could routinely change between ~4, ~7, and ~45 μm laser spot size, in less than 5 min. We applied this multi-resolution MALDI-MSI system to a single maize root tissue section with three different spatial resolutions of 5, 10, and 50 μm and compared the differences in imaging quality and signal sensitivity. Lastly, we also demonstrated the difference in depth of focus between the optical systems with 10× and 5× beam expanders.« less

Five Micron High Resolution MALDI Mass Spectrometry Imaging with Simple, Interchangeable, Multi-Resolution Optical System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Feenstra, Adam D.; Dueñas, Maria Emilia; Lee, Young Jin

High-spatial resolution mass spectrometry imaging (MSI) is crucial for the mapping of chemical distributions at the cellular and subcellular level. Here in this work, we improved our previous laser optical system for matrix-assisted laser desorption ionization (MALDI)-MSI, from ~9 μm practical laser spot size to a practical laser spot size of ~4 μm, thereby allowing for 5 μm resolution imaging without oversampling. This is accomplished through a combination of spatial filtering, beam expansion, and reduction of the final focal length. Most importantly, the new laser optics system allows for simple modification of the spot size solely through the interchanging ofmore » the beam expander component. Using 10×, 5×, and no beam expander, we could routinely change between ~4, ~7, and ~45 μm laser spot size, in less than 5 min. We applied this multi-resolution MALDI-MSI system to a single maize root tissue section with three different spatial resolutions of 5, 10, and 50 μm and compared the differences in imaging quality and signal sensitivity. Lastly, we also demonstrated the difference in depth of focus between the optical systems with 10× and 5× beam expanders.« less

Investigating different skin and gastrointestinal tract (GIT) pathologies ex vivo by autofluorescence spectroscopy and optical imaging

NASA Astrophysics Data System (ADS)

Zhelyazkova, A.; Kuzmina, I.; Borisova, E.; Penkov, N.; Genova, Ts.; Spigulis, J.; Avramov, L.

2016-01-01

The skin neoplasias are on a second place in the world statistics of cancer incidence, and gastrointestinal tract (GIT) tumours are also in the "top ten" list. For the most of cutaneous and gastrointestinal tumours could be obtained better prognoses for patients, if an earlier and precise diagnostics procedure is applied. One of the most promising approaches for development of improved diagnostic techniques, is based on optical detection, and analysis of the signatures of biological tissues for detecting the presence of pathological alterations in the investigated objects. It is important to develop and combine novel diagnostic techniques for an accurate early stage diagnosis to improve the chances for skin and GIT tumours treatment. Optical techniques are very promising methods for such noninvasive diagnosis of skin and mucosa tumours, possessing the advantages of deep imaging depth, high resolution, fast imaging speed, and noninvasive character of detection. In this study we combine autofluorescence spectroscopy and optical imaging techniques to develop more precise evaluation of the tissue pathologies investigated. We obtain chromophore maps for GIT and cutaneous samples, with better visualization of the tumours borders and margins. In addition, fluorescence spectra give us information about the early changes in chromophores' contents into the tissues during neoplasia growth.

Spherical aberration of an optical system and its influence on depth of focus.

PubMed

Mikš, Antonín; Pokorný, Petr

2017-06-10

This paper analyzes the influence of spherical aberration on the depth of focus of symmetrical optical systems for imaging of axial points. A calculation of a beam's caustics is discussed using ray equations in the image plane and considering longitudinal spherical aberration as well. Concurrently, the influence of aberration coefficients on extremes of such a curve is presented. Afterwards, conditions for aberration coefficients are derived if the Strehl definition should be the same in two symmetrically placed planes with respect to the paraxial image plane. Such conditions for optical systems with large aberrations are derived with the use of geometric-optical approximation where the gyration diameter of the beam in given planes of the optical system is evaluated. Therefore, one can calculate aberration coefficients in such a way that the optical system generates a beam of rays that has the gyration radius in a given interval smaller than the defined limit value. Moreover, one can calculate the maximal depth of focus of the optical system respecting the aforementioned conditions.

Raman Lidar Measurements of Water Vapor and Cirrus Clouds During The Passage of Hurricane Bonnie

NASA Technical Reports Server (NTRS)

Whiteman, D. N.; Evans, K. D.; Demoz, B.; Starr, D OC.; Eloranta, E. W.; Tobin, D.; Feltz, W.; Jedlovec, G. J.; Gutman, S. I.; Schwemmer, G. K.;

Using Commercial Digital Cameras and Structure-for-Motion Software to Map Snow Cover Depth from Small Aircraft

NASA Astrophysics Data System (ADS)

Sturm, M.; Nolan, M.; Larsen, C. F.

2014-12-01

A long-standing goal in snow hydrology has been to map snow cover in detail, either mapping snow depth or snow water equivalent (SWE) with sub-meter resolution. Airborne LiDAR and air photogrammetry have been used successfully for this purpose, but both require significant investments in equipment and substantial processing effort. Here we detail a relatively inexpensive and simple airborne photogrammetric technique that can be used to measure snow depth. The main airborne hardware consists of a consumer-grade digital camera attached to a survey-quality, dual-frequency GPS. Photogrammetric processing is done using commercially available Structure from Motion (SfM) software that does not require ground control points. Digital elevation models (DEMs) are made from snow-free acquisitions in the summer and snow-covered acquisitions in winter, and the maps are then differenced to arrive at snow thickness. We tested the accuracy and precision of snow depths measured using this system through 1) a comparison with airborne scanning LiDAR, 2) a comparison of results from two independent and slightly different photogrameteric systems, and 3) comparison to extensive on-the-ground measured snow depths. Vertical accuracy and precision are on the order of +/-30 cm and +/- 8 cm, respectively. The accuracy can be made to approach that of the precision if suitable snow-free ground control points exists and are used to co-register summer to winter DEM maps. Final snow depth accuracy from our series of tests was on the order of ±15 cm. This photogrammetric method substantially lowers the economic and expertise barriers to entry for mapping snow.

An Automated Method of MFRSR Calibration for Aerosol Optical Depth Analysis with Application to an Asian Dust Outbreak over the United States.

NASA Astrophysics Data System (ADS)

Augustine, John A.; Cornwall, Christopher R.; Hodges, Gary B.; Long, Charles N.; Medina, Carlos I.; Deluisi, John J.

2003-02-01

Over the past decade, networks of Multifilter Rotating Shadowband Radiometers (MFRSR) and automated sun photometers have been established in the United States to monitor aerosol properties. The MFRSR alternately measures diffuse and global irradiance in six narrow spectral bands and a broadband channel of the solar spectrum, from which the direct normal component for each may be inferred. Its 500-nm channel mimics sun photometer measurements and thus is a source of aerosol optical depth information. Automatic data reduction methods are needed because of the high volume of data produced by the MFRSR. In addition, these instruments are often not calibrated for absolute irradiance and must be periodically calibrated for optical depth analysis using the Langley method. This process involves extrapolation to the signal the MFRSR would measure at the top of the atmosphere (I0). Here, an automated clear-sky identification algorithm is used to screen MFRSR 500-nm measurements for suitable calibration data. The clear-sky MFRSR measurements are subsequently used to construct a set of calibration Langley plots from which a mean I0 is computed. This calibration I0 may be subsequently applied to any MFRSR 500-nm measurement within the calibration period to retrieve aerosol optical depth. This method is tested on a 2-month MFRSR dataset from the Table Mountain NOAA Surface Radiation Budget Network (SURFRAD) station near Boulder, Colorado. The resultant I0 is applied to two Asian dust-related high air pollution episodes that occurred within the calibration period on 13 and 17 April 2001. Computed aerosol optical depths for 17 April range from approximately 0.30 to 0.40, and those for 13 April vary from background levels to >0.30. Errors in these retrievals were estimated to range from ±0.01 to ±0.05, depending on the solar zenith angle. The calculations are compared with independent MFRSR-based aerosol optical depth retrievals at the Pawnee National Grasslands, 85 km to the northeast of Table Mountain, and to sun-photometer-derived aerosol optical depths at the National Renewable Energy Laboratory in Golden, Colorado, 50 km to the south. Both the Table Mountain and Golden stations are situated within a few kilometers of the Front Range of the Rocky Mountains, whereas the Pawnee station is on the eastern plains of Colorado. Time series of aerosol optical depth from Pawnee and Table Mountain stations compare well for 13 April when, according to the Naval Aerosol Analysis and Prediction System, an upper-level Asian dust plume enveloped most of Colorado. Aerosol optical depths at the Golden station for that event are generally greater than those at Table Mountain and Pawnee, possibly because of the proximity of Golden to Denver's urban aerosol plume. The dust over Colorado was primarily surface based on 17 April. On that day, aerosol optical depths at Table Mountain and Golden are similar but are 2 times the magnitude of those at Pawnee. This difference is attributed to meteorological conditions that favored air stagnation in the planetary boundary layer along the Front Range, and a west-to-east gradient in aerosol concentration. The magnitude and timing of the aerosol optical depth measurements at Table Mountain for these events are found to be consistent with independent measurements made at NASA Aerosol Robotic Network (AERONET) stations at Missoula, Montana, and at Bondville, Illinois.

Long-range and depth-selective imaging of macroscopic targets using low-coherence and wide-field interferometry (Conference Presentation)

NASA Astrophysics Data System (ADS)

Woo, Sungsoo; Kang, Sungsam; Yoon, Changhyeong; Choi, Wonshik

2016-03-01

With the advancement of 3D display technology, 3D imaging of macroscopic objects has drawn much attention as they provide the contents to display. The most widely used imaging methods include a depth camera, which measures time of flight for the depth discrimination, and various structured illumination techniques. However, these existing methods have poor depth resolution, which makes imaging complicated structures a difficult task. In order to resolve this issue, we propose an imaging system based upon low-coherence interferometry and off-axis digital holographic imaging. By using light source with coherence length of 200 micro, we achieved the depth resolution of 100 micro. In order to map the macroscopic objects with this high axial resolution, we installed a pair of prisms in the reference beam path for the long-range scanning of the optical path length. Specifically, one prism was fixed in position, and the other prism was mounted on a translation stage and translated in parallel to the first prism. Due to the multiple internal reflections between the two prisms, the overall path length was elongated by a factor of 50. In this way, we could cover a depth range more than 1 meter. In addition, we employed multiple speckle illuminations and incoherent averaging of the acquired holographic images for reducing the specular reflections from the target surface. Using this newly developed system, we performed imaging targets with multiple different layers and demonstrated imaging targets hidden behind the scattering layers. The method was also applied to imaging targets located around the corner.

Global and Seasonal Aerosol Optical Depths Derived From Ultraviolet Observations by Satellites (TOMS)

NASA Technical Reports Server (NTRS)

Herman, J. R.; Torres, O.

1999-01-01

It has been shown that absorbing aerosols (dust, smoke, volcanic ash) can be detected in the ultraviolet wavelengths (331 nm to 380 nm) from satellite observations (TOMS, Total Ozone Mapping Spectrometer) over both land and water. The theoretical basis for these observations and their conversions to optical depths is discussed in terms of an aerosol index AI or N-value residue (assigned positive for absorbing aerosols). The theoretical considerations show that negative values of the AI frequently represent the presence of non-absorbing aerosols (NA) in the troposphere (mostly pollution in the form of sulfates, hydrocarbons, etc., and some natural sulfate aerosols) with particle sizes near 0.1 to 0.2 microns or less. The detection of small-particle non-absorbing aerosols from the measured backscattered radiances is based on the observed wavelength dependence from Mie scattering after the background Rayleigh scattering is subtracted. The Mie scattering from larger particles, 1 micron or more (e.g., cloud water droplets) has too small a wavelength dependence to be detected by this method. In regions that are mostly cloud free, aerosols of all sizes can be seen in the single channel 380 nm or 360 nm radiance data. The most prominent Al feature observed is the strong asymmetry in aerosol amount between the Northern and Southern Hemispheres, with the large majority of NA occurring above 20degN latitude. The maximum values of non-absorbing aerosols are observed over the eastern U.S. and most of western Europe corresponding to the areas of highest industrial pollution. Annual cycles in the amount of NA are observed over Europe and North America with maxima occurring in the summer corresponding to times of minimum wind transport. Similarly, the maxima in the winter over the Atlantic Ocean occurs because of wind borne transport from the land. Most regions of the world have the maximum amount of non-absorbing aerosol in the December to January period except for the eastern North America and Europe. Comparisons of the estimated TOMS aerosol optical depths show good agreement in magnitude and seasonal dependence with sun-photometer optical depths obtained at Goddard Space Flight Center (39degN 76.88degW) in the U.S. and in Lille (50.63degN 3.07degE) in France. The study of these aerosols is important for detecting the sources of industrial pollution and its redistribution by winds on a global basis, as well as its effect on reducing the UV irradiance at the Earth's surface.

Aerosol Mapping From Space: Strengths, Limitations, and Applications

NASA Technical Reports Server (NTRS)

Kahn, Ralph

2010-01-01

The aerosol data products from the NASA Earth Observing System's MISR and MODIS instruments provide significant advances in regional and global aerosol optical depth (AOD) mapping, aerosol type measurement, and source plume characterization from space. These products have been and are being used for many applications, ranging from regional air quality assessment, to aerosol air mass type identification and evolution, to wildfire smoke injection height and aerosol transport model validation. However, retrieval uncertainties and coverage gaps still limit the quantitative constraints these satellite data place on some important questions, such as global-scale long-term trends and direct aerosol radiative forcing. Major advances in these areas seem to require a different paradigm, involving the integration of satellite with suborbital data and with models. This presentation will briefly summarize where we stand, and what incremental improvements we can expect, with the current MISR and MODIS aerosol products, and will then elaborate on some initial steps aimed at the necessary integration of satellite data with data from other sources and with chemical transport models.

Visualization of chorioretinal vasculature in mice in vivo using a combined OCT/SLO imaging system

NASA Astrophysics Data System (ADS)

Goswami, Mayank; Zhang, Pengfei; Pugh, Edward N.; Zawadzki, Robert J.

2016-03-01

Chorioretinal blood vessel morphology in mice is of great interest to researchers studying eye disease mechanisms in animal models. Two leading retinal imaging modalities -- Optical Coherence Tomography (OCT) and Scanning Laser Ophthalmoscopy (SLO) -- have offered much insight into vascular morphology and blood flow. OCT "flow-contrast" methods have provided detailed mapping of vascular morphology with micrometer depth resolution, while OCT Doppler methods have enabled the measurement of local flow velocities. SLO remains indispensable in studying blood leakage, microaneurysms, and the clearance time of contrast agents of different sizes. In this manuscript we present results obtained with a custom OCT/SLO system applied to visualize the chorioretinal vascular morphology of pigmented C57Bl/6J and albino nude (Nu/Nu) mice. Blood perfusion maps of choroidal vessels and choricapillaris created by OCT and SLO are presented, along with detailed evaluation of different OCT imaging parameters, including the use of the scattering contrast agent Intralipid. Future applications are discussed.

Optical elements with extended depth of focus and arbitrary distribution of intensity along the focal segment obtained by angular modulation of the optical power

NASA Astrophysics Data System (ADS)

Kakarenko, K.; Ducin, I.; Jaroszewicz, Z.; Kołodziejczyk, A.; Petelczyc, K.; Stompor, A.; Sypek, M.

2015-04-01

Light Sword Lens (LSL), i.e., an optical element with extended depth of focus (EDOF) characterized by angular modulation of the optical power in its conventional form is characterized by a linear relationship between the optical power and the angular coordinate of the corresponding angular lens sector. This dependence may be manipulated in function of the required design needs. In the present communicate this additional degree of freedom of design is used for elimination of the LSL shape discontinuity.

Efficient characterization of phase space mapping in axially symmetric optical systems

NASA Astrophysics Data System (ADS)

Barbero, Sergio; Portilla, Javier

2018-01-01

Phase space mapping, typically between an object and image plane, characterizes an optical system within a geometrical optics framework. We propose a novel conceptual frame to characterize the phase mapping in axially symmetric optical systems for arbitrary object locations, not restricted to a specific object plane. The idea is based on decomposing the phase mapping into a set of bivariate equations corresponding to different values of the radial coordinate on a specific object surface (most likely the entrance pupil). These equations are then approximated through bivariate Chebyshev interpolation at Chebyshev nodes, which guarantees uniform convergence. Additionally, we propose the use of a new concept (effective object phase space), defined as the set of points of the phase space at the first optical element (typically the entrance pupil) that are effectively mapped onto the image surface. The effective object phase space provides, by means of an inclusion test, a way to avoid tracing rays that do not reach the image surface.

The Cosmology Large Angular Scale Surveyor

NASA Astrophysics Data System (ADS)

Harrington, Kathleen; Marriage, Tobias; Ali, Aamir; Appel, John W.; Bennett, Charles L.; Boone, Fletcher; Brewer, Michael; Chan, Manwei; Chuss, David T.; Colazo, Felipe; Dahal, Sumit; Denis, Kevin; Dünner, Rolando; Eimer, Joseph; Essinger-Hileman, Thomas; Fluxa, Pedro; Halpern, Mark; Hilton, Gene; Hinshaw, Gary F.; Hubmayr, Johannes; Iuliano, Jeffrey; Karakla, John; McMahon, Jeff; Miller, Nathan T.; Moseley, Samuel H.; Palma, Gonzalo; Parker, Lucas; Petroff, Matthew; Pradenas, Bastián.; Rostem, Karwan; Sagliocca, Marco; Valle, Deniz; Watts, Duncan; Wollack, Edward; Xu, Zhilei; Zeng, Lingzhen

2016-07-01

The Cosmology Large Angular Scale Surveyor (CLASS) is a four telescope array designed to characterize relic primordial gravitational waves from in ation and the optical depth to reionization through a measurement of the polarized cosmic microwave background (CMB) on the largest angular scales. The frequencies of the four CLASS telescopes, one at 38 GHz, two at 93 GHz, and one dichroic system at 145/217 GHz, are chosen to avoid spectral regions of high atmospheric emission and span the minimum of the polarized Galactic foregrounds: synchrotron emission at lower frequencies and dust emission at higher frequencies. Low-noise transition edge sensor detectors and a rapid front-end polarization modulator provide a unique combination of high sensitivity, stability, and control of systematics. The CLASS site, at 5200 m in the Chilean Atacama desert, allows for daily mapping of up to 70% of the sky and enables the characterization of CMB polarization at the largest angular scales. Using this combination of a broad frequency range, large sky coverage, control over systematics, and high sensitivity, CLASS will observe the reionization and recombination peaks of the CMB E- and B-mode power spectra. CLASS will make a cosmic variance limited measurement of the optical depth to reionization and will measure or place upper limits on the tensor-to-scalar ratio, r, down to a level of 0.01 (95% C.L.).

The Cosmology Large Angular Scale Surveyor (CLASS)

NASA Technical Reports Server (NTRS)

Harrington, Kathleen; Marriange, Tobias; Aamir, Ali; Appel, John W.; Bennett, Charles L.; Boone, Fletcher; Brewer, Michael; Chan, Manwei; Chuss, David T.; Colazo, Felipe;

Detailed interpretation of aeromagnetic data from the Patagonia Mountains area, southeastern Arizona

USGS Publications Warehouse

Bultman, Mark W.

2015-01-01

Euler deconvolution depth estimates derived from aeromagnetic data with a structural index of 0 show that mapped faults on the northern margin of the Patagonia Mountains generally agree with the depth estimates in the new geologic model. The deconvolution depth estimates also show that the concealed Patagonia Fault southwest of the Patagonia Mountains is more complex than recent geologic mapping represents. Additionally, Euler deconvolution depth estimates with a structural index of 2 locate many potential intrusive bodies that might be associated with known and unknown mineralization.

Reflective all-sky thermal infrared cloud imager.

PubMed

Redman, Brian J; Shaw, Joseph A; Nugent, Paul W; Clark, R Trevor; Piazzolla, Sabino

2018-04-30

A reflective all-sky imaging system has been built using a long-wave infrared microbolometer camera and a reflective metal sphere. This compact system was developed for measuring spatial and temporal patterns of clouds and their optical depth in support of applications including Earth-space optical communications. The camera is mounted to the side of the reflective sphere to leave the zenith sky unobstructed. The resulting geometric distortion is removed through an angular map derived from a combination of checkerboard-target imaging, geometric ray tracing, and sun-location-based alignment. A tape of high-emissivity material on the side of the reflector acts as a reference that is used to estimate and remove thermal emission from the metal sphere. Once a bias that is under continuing study was removed, sky radiance measurements from the all-sky imager in the 8-14 μm wavelength range agreed to within 0.91 W/(m 2 sr) of measurements from a previously calibrated, lens-based infrared cloud imager over its 110° field of view.

Fluorescence Imaging In Vivo at Wavelengths beyond 1500 nm.

PubMed

Diao, Shuo; Blackburn, Jeffrey L; Hong, Guosong; Antaris, Alexander L; Chang, Junlei; Wu, Justin Z; Zhang, Bo; Cheng, Kai; Kuo, Calvin J; Dai, Hongjie

2015-12-01

Compared to imaging in the visible and near-infrared regions below 900 nm, imaging in the second near-infrared window (NIR-II, 1000-1700 nm) is a promising method for deep-tissue high-resolution optical imaging in vivo mainly owing to the reduced scattering of photons traversing through biological tissues. Herein, semiconducting single-walled carbon nanotubes with large diameters were used for in vivo fluorescence imaging in the long-wavelength NIR region (1500-1700 nm, NIR-IIb). With this imaging agent, 3-4 μm wide capillary blood vessels at a depth of about 3 mm could be resolved. Meanwhile, the blood-flow speeds in multiple individual vessels could be mapped simultaneously. Furthermore, NIR-IIb tumor imaging of a live mouse was explored. NIR-IIb imaging can be generalized to a wide range of fluorophores emitting at up to 1700 nm for high-performance in vivo optical imaging. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Highly-efficient quantum memory for polarization qubits in a spatially-multiplexed cold atomic ensemble.

PubMed

Vernaz-Gris, Pierre; Huang, Kun; Cao, Mingtao; Sheremet, Alexandra S; Laurat, Julien

2018-01-25

Quantum memory for flying optical qubits is a key enabler for a wide range of applications in quantum information. A critical figure of merit is the overall storage and retrieval efficiency. So far, despite the recent achievements of efficient memories for light pulses, the storage of qubits has suffered from limited efficiency. Here we report on a quantum memory for polarization qubits that combines an average conditional fidelity above 99% and efficiency around 68%, thereby demonstrating a reversible qubit mapping where more information is retrieved than lost. The qubits are encoded with weak coherent states at the single-photon level and the memory is based on electromagnetically-induced transparency in an elongated laser-cooled ensemble of cesium atoms, spatially multiplexed for dual-rail storage. This implementation preserves high optical depth on both rails, without compromise between multiplexing and storage efficiency. Our work provides an efficient node for future tests of quantum network functionalities and advanced photonic circuits.

Hyperpolarizability and Operational Magic Wavelength in an Optical Lattice Clock

NASA Astrophysics Data System (ADS)

Brown, R. C.; Phillips, N. B.; Beloy, K.; McGrew, W. F.; Schioppo, M.; Fasano, R. J.; Milani, G.; Zhang, X.; Hinkley, N.; Leopardi, H.; Yoon, T. H.; Nicolodi, D.; Fortier, T. M.; Ludlow, A. D.

2017-12-01

Optical clocks benefit from tight atomic confinement enabling extended interrogation times as well as Doppler- and recoil-free operation. However, these benefits come at the cost of frequency shifts that, if not properly controlled, may degrade clock accuracy. Numerous theoretical studies have predicted optical lattice clock frequency shifts that scale nonlinearly with trap depth. To experimentally observe and constrain these shifts in an 171Yb optical lattice clock, we construct a lattice enhancement cavity that exaggerates the light shifts. We observe an atomic temperature that is proportional to the optical trap depth, fundamentally altering the scaling of trap-induced light shifts and simplifying their parametrization. We identify an "operational" magic wavelength where frequency shifts are insensitive to changes in trap depth. These measurements and scaling analysis constitute an essential systematic characterization for clock operation at the 10-18 level and beyond.

Optimizing visual comfort for stereoscopic 3D display based on color-plus-depth signals.

PubMed

Shao, Feng; Jiang, Qiuping; Fu, Randi; Yu, Mei; Jiang, Gangyi

2016-05-30

Visual comfort is a long-facing problem in stereoscopic 3D (S3D) display. In this paper, targeting to produce S3D content based on color-plus-depth signals, a general framework for depth mapping to optimize visual comfort for S3D display is proposed. The main motivation of this work is to remap the depth range of color-plus-depth signals to a new depth range that is suitable to comfortable S3D display. Towards this end, we first remap the depth range globally based on the adjusted zero disparity plane, and then present a two-stage global and local depth optimization solution to solve the visual comfort problem. The remapped depth map is used to generate the S3D output. We demonstrate the power of our approach on perceptually uncomfortable and comfortable stereoscopic images.

Human Stereopsis is not Limited by the Optics of the Well-focused Eye

PubMed Central

Vlaskamp, Björn N.S.; Yoon, Geunyoung; Banks, Martin S.

2011-01-01

Human stereopsis—the perception of depth from differences in the two eyes’ images—is very precise: Image differences smaller than a single photoreceptor can be converted into a perceived difference in depth. To better understand what determines this precision, we examined how the eyes’ optics affects stereo resolution. We did this by comparing performance with normal, well-focused optics and with optics improved by eliminating chromatic aberration and correcting higher-order aberrations. We first measured luminance contrast sensitivity in both eyes and showed that we had indeed improved optical quality significantly. We then measured stereo resolution in two ways: by finding the finest corrugation in depth that one can perceive, and by finding the smallest disparity one can perceive as different from zero. Our optical manipulation had no effect on stereo performance. We checked this by redoing the experiments at low contrast and again found no effect of improving optical quality. Thus, the resolution of human stereopsis is not limited by the optics of the well-focused eye. We discuss the implications of this remarkable finding. PMID:21734272

GeSn/Si Avalanche Photodetectors on Si substrates

DTIC Science & Technology

2016-09-16

of processes for different photo detectors. In-depth of study has been conducted for GeSn photo conductors and photodiodes. A summary of the...The material growth mechanism was in-depth studied; secondly, the material and optical characterizations have been conducted , including SEM, TEM, XRD...investigated. The material growth mechanism was in-depth studied; secondly, the material and optical characterizations have been conducted , including

Triangulation-based 3D surveying borescope

NASA Astrophysics Data System (ADS)

Pulwer, S.; Steglich, P.; Villringer, C.; Bauer, J.; Burger, M.; Franz, M.; Grieshober, K.; Wirth, F.; Blondeau, J.; Rautenberg, J.; Mouti, S.; Schrader, S.

2016-04-01

In this work, a measurement concept based on triangulation was developed for borescopic 3D-surveying of surface defects. The integration of such measurement system into a borescope environment requires excellent space utilization. The triangulation angle, the projected pattern, the numerical apertures of the optical system, and the viewing angle were calculated using partial coherence imaging and geometric optical raytracing methods. Additionally, optical aberrations and defocus were considered by the integration of Zernike polynomial coefficients. The measurement system is able to measure objects with a size of 50 μm in all dimensions with an accuracy of +/- 5 μm. To manage the issue of a low depth of field while using an optical high resolution system, a wavelength dependent aperture was integrated. Thereby, we are able to control depth of field and resolution of the optical system and can use the borescope in measurement mode with high resolution and low depth of field or in inspection mode with low resolution and higher depth of field. First measurements of a demonstrator system are in good agreement with our simulations.

Robust calibration of an optical-lattice depth based on a phase shift

NASA Astrophysics Data System (ADS)

Cabrera-Gutiérrez, C.; Michon, E.; Brunaud, V.; Kawalec, T.; Fortun, A.; Arnal, M.; Billy, J.; Guéry-Odelin, D.

2018-04-01

We report on a method to calibrate the depth of an optical lattice. It consists of triggering the intrasite dipole mode of the cloud by a sudden phase shift. The corresponding oscillatory motion is directly related to the interband frequencies on a large range of lattice depths. Remarkably, for a moderate displacement, a single frequency dominates the oscillation of the zeroth and first orders of the interference pattern observed after a sufficiently long time of flight. The method is robust against atom-atom interactions and the exact value of the extra weak external confinement superimposed to the optical lattice.

Structure and physics of solar faculae

NASA Astrophysics Data System (ADS)

Pecker, J.-C.; Dumont, S.; Mouradian, Z.

1992-04-01

The optical depths of layers in the chromosphere-corona transition (CCT) zone, which is responsible for resolved structures in CII, CIII, OIV, and OVI lines, were determined using a new method that takes into account the effect of roughness (or local departures from sphericity) of the emitting layers in the CCT zone. The method allows determination of the angle alpha typical of the roughness (in case of availability of resolved data) and the two optical depths tau-1 and tau-2. It is shown that, even in unresolved cases, the new method gives a more realistic determination of the optical depths than previously determined.

Numerical dispersion compensation for Partial Coherence Interferometry and Optical Coherence Tomography.

PubMed

Fercher, A; Hitzenberger, C; Sticker, M; Zawadzki, R; Karamata, B; Lasser, T

2001-12-03

Dispersive samples introduce a wavelength dependent phase distortion to the probe beam. This leads to a noticeable loss of depth resolution in high resolution OCT using broadband light sources. The standard technique to avoid this consequence is to balance the dispersion of the sample byarrangingadispersive materialinthereference arm. However, the impact of dispersion is depth dependent. A corresponding depth dependent dispersion balancing technique is diffcult to implement. Here we present a numerical dispersion compensation technique for Partial Coherence Interferometry (PCI) and Optical Coherence Tomography (OCT) based on numerical correlation of the depth scan signal with a depth variant kernel. It can be used a posteriori and provides depth dependent dispersion compensation. Examples of dispersion compensated depth scan signals obtained from microscope cover glasses are presented.

Aerosol Optical Depth as Observed by the Mars Science Laboratory REMS UV Photodiodes

NASA Astrophysics Data System (ADS)

Smith, M. D.; Zorzano, M. P.; Lemmon, M. T.; Martín-Torres, J.; Mendaza de Cal, T.

2016-12-01

Systematic observations taken by the REMS UV photodiodes on a daily basis throughout the landed Mars Science Laboratory mission provide a highly useful tool for characterizing aerosols above Gale Crater. Radiative transfer modeling is used to model the more than two Mars Years of observations taken to date taking into account multiple scattering from aerosols and the extended field of view of the REMS UV photodiodes. The retrievals show in detail the annual cycle of aerosol optical depth, which is punctuated with numerous short timescale events of increased optical depth. Dust deposition onto the photodiodes is accounted for by comparison with aerosol optical depth derived from direct imaging of the Sun by Mastcam. The effect of dust on the photodiodes is noticeable, but does not dominate the signal. Cleaning of dust from the photodiodes was observed in the season around Ls=270°, but not during other seasons. Systematic deviations in the residuals from the retrieval fit are indicative of changes in aerosol effective particle size, with larger particles present during periods of increased optical depth. This seasonal dependence of aerosol particle size is expected as dust activity injects larger particles into the air, while larger aerosols settle out of the atmosphere more quickly leading to a smaller average particle size over time.

Aerosol optical depth as observed by the Mars Science Laboratory REMS UV photodiodes

NASA Astrophysics Data System (ADS)

Smith, Michael D.; Zorzano, María-Paz; Lemmon, Mark; Martín-Torres, Javier; Mendaza de Cal, Teresa

2016-12-01

Systematic observations taken by the REMS UV photodiodes on a daily basis throughout the landed Mars Science Laboratory mission provide a highly useful tool for characterizing aerosols above Gale Crater. Radiative transfer modeling is used to model the approximately 1.75 Mars Years of observations taken to date taking into account multiple scattering from aerosols and the extended field of view of the REMS UV photodiodes. The retrievals show in detail the annual cycle of aerosol optical depth, which is punctuated with numerous short timescale events of increased optical depth. Dust deposition onto the photodiodes is accounted for by comparison with aerosol optical depth derived from direct imaging of the Sun by Mastcam. The effect of dust on the photodiodes is noticeable, but does not dominate the signal. Cleaning of dust from the photodiodes was observed in the season around Ls=270°, but not during other seasons. Systematic deviations in the residuals from the retrieval fit are indicative of changes in aerosol effective particle size, with larger particles present during periods of increased optical depth. This seasonal dependence of aerosol particle size is expected as dust activity injects larger particles into the air, while larger aerosols settle out of the atmosphere more quickly leading to a smaller average particle size over time.

Effects of Optical Combiner and IPD Change for Convergence on Near-Field Depth Perception in an Optical See-Through HMD.

PubMed

Lee, Sangyoon; Hu, Xinda; Hua, Hong

2016-05-01

Many error sources have been explored in regards to the depth perception problem in augmented reality environments using optical see-through head-mounted displays (OST-HMDs). Nonetheless, two error sources are commonly neglected: the ray-shift phenomenon and the change in interpupillary distance (IPD). The first source of error arises from the difference in refraction for virtual and see-through optical paths caused by an optical combiner, which is required of OST-HMDs. The second occurs from the change in the viewer's IPD due to eye convergence. In this paper, we analyze the effects of these two error sources on near-field depth perception and propose methods to compensate for these two types of errors. Furthermore, we investigate their effectiveness through an experiment comparing the conditions with and without our error compensation methods applied. In our experiment, participants estimated the egocentric depth of a virtual and a physical object located at seven different near-field distances (40∼200 cm) using a perceptual matching task. Although the experimental results showed different patterns depending on the target distance, the results demonstrated that the near-field depth perception error can be effectively reduced to a very small level (at most 1 percent error) by compensating for the two mentioned error sources.

SAM 2 measurements of the polar stratospheric aerosol. Volume 9: October 1982 - April 1983

NASA Technical Reports Server (NTRS)

Mcmaster, L. R.; Powell, K. A.

1991-01-01

The Stratospheric Aerosol Measurement (SAM) II sensor aboard Nimbus 7 is providing 1.0 micron extinction measurements of Antarctic and Arctic stratospheric aerosols with a vertical resolution of 1 km. Representative examples and weekly averages including corresponding temperature profiles provided by NOAA for the time and place of each SAM II measurement are presented. Contours of aerosol extinction as a function of altitude and longitude or time are plotted, and aerosol optical depths are calculated for each week. Typical values of aerosol extinction and stratospheric optical depth in the Arctic are unusually large due to the presence of material from the El Chichon volcano eruption in the Spring of 1982. For example, the optical depth peaked at 0.068, more than 50 times background values. Typical values of aerosol extinction and stratospheric optical depth in the Antarctic varied considerably during this period due to the transport and arrival of the material from the El Chichon eruption. For example, the stratospheric optical depth varied from 0.002 in October 1982, to 0.021 in January 1983. Polar stratospheric clouds were observed during the Arctic winter, as expected. A representative sample is provided of the ninth 6-month period of data to be used in atmospheric and climatic studies.

Rapid 2D-to-3D conversion

NASA Astrophysics Data System (ADS)

Harman, Philip V.; Flack, Julien; Fox, Simon; Dowley, Mark

2002-05-01

The conversion of existing 2D images to 3D is proving commercially viable and fulfills the growing need for high quality stereoscopic images. This approach is particularly effective when creating content for the new generation of autostereoscopic displays that require multiple stereo images. The dominant technique for such content conversion is to develop a depth map for each frame of 2D material. The use of a depth map as part of the 2D to 3D conversion process has a number of desirable characteristics: 1. The resolution of the depth may be lower than that of the associated 2D image. 2. It can be highly compressed. 3. 2D compatibility is maintained. 4. Real time generation of stereo, or multiple stereo pairs, is possible. The main disadvantage has been the laborious nature of the manual conversion techniques used to create depth maps from existing 2D images, which results in a slow and costly process. An alternative, highly productive technique has been developed based upon the use of Machine Leaning Algorithm (MLAs). This paper describes the application of MLAs to the generation of depth maps and presents the results of the commercial application of this approach.

Optical Mapping of Membrane Potential and Epicardial Deformation in Beating Hearts.

PubMed

Zhang, Hanyu; Iijima, Kenichi; Huang, Jian; Walcott, Gregory P; Rogers, Jack M

2016-07-26

Cardiac optical mapping uses potentiometric fluorescent dyes to image membrane potential (Vm). An important limitation of conventional optical mapping is that contraction is usually arrested pharmacologically to prevent motion artifacts from obscuring Vm signals. However, these agents may alter electrophysiology, and by abolishing contraction, also prevent optical mapping from being used to study coupling between electrical and mechanical function. Here, we present a method to simultaneously map Vm and epicardial contraction in the beating heart. Isolated perfused swine hearts were stained with di-4-ANEPPS and fiducial markers were glued to the epicardium for motion tracking. The heart was imaged at 750 Hz with a video camera. Fluorescence was excited with cyan or blue LEDs on alternating camera frames, thus providing a 375-Hz effective sampling rate. Marker tracking enabled the pixel(s) imaging any epicardial site within the marked region to be identified in each camera frame. Cyan- and blue-elicited fluorescence have different sensitivities to Vm, but other signal features, primarily motion artifacts, are common. Thus, taking the ratio of fluorescence emitted by a motion-tracked epicardial site in adjacent frames removes artifacts, leaving Vm (excitation ratiometry). Reconstructed Vm signals were validated by comparison to monophasic action potentials and to conventional optical mapping signals. Binocular imaging with additional video cameras enabled marker motion to be tracked in three dimensions. From these data, epicardial deformation during the cardiac cycle was quantified by computing finite strain fields. We show that the method can simultaneously map Vm and strain in a left-sided working heart preparation and can image changes in both electrical and mechanical function 5 min after the induction of regional ischemia. By allowing high-resolution optical mapping in the absence of electromechanical uncoupling agents, the method relieves a long-standing limitation of optical mapping and has potential to enhance new studies in coupled cardiac electromechanics. Copyright © 2016 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Computational adaptive optics for broadband optical interferometric tomography of biological tissue.

PubMed

Adie, Steven G; Graf, Benedikt W; Ahmad, Adeel; Carney, P Scott; Boppart, Stephen A

2012-05-08

Aberrations in optical microscopy reduce image resolution and contrast, and can limit imaging depth when focusing into biological samples. Static correction of aberrations may be achieved through appropriate lens design, but this approach does not offer the flexibility of simultaneously correcting aberrations for all imaging depths, nor the adaptability to correct for sample-specific aberrations for high-quality tomographic optical imaging. Incorporation of adaptive optics (AO) methods have demonstrated considerable improvement in optical image contrast and resolution in noninterferometric microscopy techniques, as well as in optical coherence tomography. Here we present a method to correct aberrations in a tomogram rather than the beam of a broadband optical interferometry system. Based on Fourier optics principles, we correct aberrations of a virtual pupil using Zernike polynomials. When used in conjunction with the computed imaging method interferometric synthetic aperture microscopy, this computational AO enables object reconstruction (within the single scattering limit) with ideal focal-plane resolution at all depths. Tomographic reconstructions of tissue phantoms containing subresolution titanium-dioxide particles and of ex vivo rat lung tissue demonstrate aberration correction in datasets acquired with a highly astigmatic illumination beam. These results also demonstrate that imaging with an aberrated astigmatic beam provides the advantage of a more uniform depth-dependent signal compared to imaging with a standard gaussian beam. With further work, computational AO could enable the replacement of complicated and expensive optical hardware components with algorithms implemented on a standard desktop computer, making high-resolution 3D interferometric tomography accessible to a wider group of users and nonspecialists.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bourdon, Christopher Jay; Olsen, Michael G.; Gorby, Allen D.

The analytical model for the depth of correlation (measurement depth) of a microscopic particle image velocimetry (micro-PIV) experiment derived by Olsen and Adrian (Exp. Fluids, 29, pp. S166-S174, 2000) has been modified to be applicable to experiments using high numerical aperture optics. A series of measurements are presented that experimentally quantify the depth of correlation of micro-PIV velocity measurements which employ high numerical aperture and magnification optics. These measurements demonstrate that the modified analytical model is quite accurate in estimating the depth of correlation in micro-PIV measurements using this class of optics. Additionally, it was found that the Gaussian particlemore » approximation made in this model does not significantly affect the model's performance. It is also demonstrated that this modified analytical model easily predicts the depth of correlation when viewing into a medium of a different index of refraction than the immersion medium.« less

The Ring System of Saturn as Seen by Cassini-VIMS (Invited)

NASA Astrophysics Data System (ADS)

Filacchione, G.; Ciarniello, M.; Capaccioni, F.

2015-08-01

Since 2004 the Visual and Infrared Mapping Spectrometer (VIMS) aboard Cassini has acquired numerous hyperspectral mosaics in the 0.35-5.1 μm spectral range of Saturn's main rings in very different illumination and viewing geometries. These observations have allowed us to infer the ring particles physical properties and composition: water ice abundance is estimated through the 1.25-1.5-2.0 μm band depths, chromophores distribution is derived from visible spectral slopes while organic material is traced by the aliphatic compounds signature at 3.42 μm which appears stronger on CD and C ring than on A-B rings (Filacchione et al., 2014). Observed reflectance spectra are fitted with a spectrophotometric model based on Montecarlo ray-tracing with the scope to infer particles composition while disentangling photometric effects (caused by multiple scattering, opposition surge and forward scattering) which depend on illumination/viewing geometries. Spectral bond albedo for different regions of the rings has been best-fitted using Hapke's radiative transfer modeling (Ciarniello et al, 2011) by choosing different mixtures of water ice, tholin, and amorphous carbon particles populations. While tholin distribution seems to be fairly constant across the rings, the amorphous carbon appears anti-correlated with optical depth. Moreover, dark material contamination is less effective on densest regions, where the more intense rejuvenation processes occur, in agreement with the ballistic transport theory (Cuzzi and Estrada,1998). Finally, the 3.6 μm continuum peak wavelength is used to infer particles temperature, which is anti-correlated with the albedo and the optical depth (tau): low-albedo/low-tau C ring and CD have higher temperatures than A-B rings where albedo and tau are high. This trend matches direct temperature measurements by CIRS (Spilker et al., 2013).

A calibration method immune to the projector errors in fringe projection profilometry

NASA Astrophysics Data System (ADS)

Zhang, Ruihua; Guo, Hongwei

2017-08-01

In fringe projection technique, system calibration is a tedious task to establish the mapping relationship between the object depths and the fringe phases. Especially, it is not easy to accurately determine the parameters of the projector in this system, which may induce errors in the measurement results. To solve this problem, this paper proposes a new calibration by using the cross-ratio invariance in the system geometry for determining the phase-to-depth relations. In it, we analyze the epipolar eometry of the fringe projection system. On each epipolar plane, the depth variation along an incident ray induces the pixel movement along the epipolar line on the image plane of the camera. These depth variations and pixel movements can be connected by use of the projective transformations, under which condition the cross-ratio for each of them keeps invariant. Based on this fact, we suggest measuring the depth map by use of this cross-ratio invariance. Firstly, we shift the reference board in its perpendicular direction to three positions with known depths, and measure their phase maps as the reference phase maps; and secondly, when measuring an object, we calculate the object depth at each pixel by equating the cross-ratio of the depths to that of the corresponding pixels having the same phase on the image plane of the camera. This method is immune to the errors sourced from the projector, including the distortions both in the geometric shapes and in the intensity profiles of the projected fringe patterns.The experimental results demonstrate the proposed method to be feasible and valid.

Optical instruments synergy in determination of optical depth of thin clouds

NASA Astrophysics Data System (ADS)

Viviana Vlăduţescu, Daniela; Schwartz, Stephen E.; Huang, Dong

2018-04-01

Optically thin clouds have a strong radiative effect and need to be represented accurately in climate models. Cloud optical depth of thin clouds was retrieved using high resolution digital photography, lidar, and a radiative transfer model. The Doppler Lidar was operated at 1.5 μm, minimizing return from Rayleigh scattering, emphasizing return from aerosols and clouds. This approach examined cloud structure on scales 3 to 5 orders of magnitude finer than satellite products, opening new avenues for examination of cloud structure and evolution.

Optical Instruments Synergy in Determination of Optical Depth of Thin Clouds

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vladutescu, Daniela V.; Schwartz, Stephen E.

Optically thin clouds have a strong radiative effect and need to be represented accurately in climate models. Cloud optical depth of thin clouds was retrieved using high resolution digital photography, lidar, and a radiative transfer model. The Doppler Lidar was operated at 1.5 μm, minimizing return from Rayleigh scattering, emphasizing return from aerosols and clouds. This approach examined cloud structure on scales 3 to 5 orders of magnitude finer than satellite products, opening new avenues for examination of cloud structure and evolution.

Removing the depth-degeneracy in optical frequency domain imaging with frequency shifting

PubMed Central

Yun, S. H.; Tearney, G. J.; de Boer, J. F.; Bouma, B. E.

2009-01-01

A novel technique using an acousto-optic frequency shifter in optical frequency domain imaging (OFDI) is presented. The frequency shift eliminates the ambiguity between positive and negative differential delays, effectively doubling the interferometric ranging depth while avoiding image cross-talk. A signal processing algorithm is demonstrated to accommodate nonlinearity in the tuning slope of the wavelength-swept OFDI laser source. PMID:19484034

Aerosol optical depth (AOD) and Angstrom exponent of aerosols observed by the Chinese Sun Hazemeter Network from August 2004 to September 2005

Treesearch

Jinyuan Xin; Yuesi Wang; Zhanqing Li; Pucai Wang; Wei Min Hao; Bryce L. Nordgren; Shigong Wang; Guangren Lui; Lili Wang; Tianxue Wen; Yang Sun; Bo Hu

2007-01-01

To reduce uncertainties in the quantitative assessment of aerosol effects on regional climate and environmental changes, extensive measurements of aerosol optical properties were made with handheld Sun photometers in the Chinese Sun Hazemeter Network (CSHNET) starting in August 2004. Regional characteristics of the aerosol optical depth (AOD) at 500 nm and Angstrom...

Fully Convolutional Network-Based Multifocus Image Fusion.

PubMed

Guo, Xiaopeng; Nie, Rencan; Cao, Jinde; Zhou, Dongming; Qian, Wenhua

2018-07-01

As the optical lenses for cameras always have limited depth of field, the captured images with the same scene are not all in focus. Multifocus image fusion is an efficient technology that can synthesize an all-in-focus image using several partially focused images. Previous methods have accomplished the fusion task in spatial or transform domains. However, fusion rules are always a problem in most methods. In this letter, from the aspect of focus region detection, we propose a novel multifocus image fusion method based on a fully convolutional network (FCN) learned from synthesized multifocus images. The primary novelty of this method is that the pixel-wise focus regions are detected through a learning FCN, and the entire image, not just the image patches, are exploited to train the FCN. First, we synthesize 4500 pairs of multifocus images by repeatedly using a gaussian filter for each image from PASCAL VOC 2012, to train the FCN. After that, a pair of source images is fed into the trained FCN, and two score maps indicating the focus property are generated. Next, an inversed score map is averaged with another score map to produce an aggregative score map, which take full advantage of focus probabilities in two score maps. We implement the fully connected conditional random field (CRF) on the aggregative score map to accomplish and refine a binary decision map for the fusion task. Finally, we exploit the weighted strategy based on the refined decision map to produce the fused image. To demonstrate the performance of the proposed method, we compare its fused results with several start-of-the-art methods not only on a gray data set but also on a color data set. Experimental results show that the proposed method can achieve superior fusion performance in both human visual quality and objective assessment.

Attenuated total reflection-Fourier transform infrared imaging of large areas using inverted prism crystals and combining imaging and mapping.

PubMed

Chan, K L Andrew; Kazarian, Sergei G

2008-10-01

Attenuated total reflection-Fourier transform infrared (ATR-FT-IR) imaging is a very useful tool for capturing chemical images of various materials due to the simple sample preparation and the ability to measure wet samples or samples in an aqueous environment. However, the size of the array detector used for image acquisition is often limited and there is usually a trade off between spatial resolution and the field of view (FOV). The combination of mapping and imaging can be used to acquire images with a larger FOV without sacrificing spatial resolution. Previous attempts have demonstrated this using an infrared microscope and a Germanium hemispherical ATR crystal to achieve images of up to 2.5 mm x 2.5 mm but with varying spatial resolution and depth of penetration across the imaged area. In this paper, we demonstrate a combination of mapping and imaging with a different approach using an external optics housing for large ATR accessories and inverted ATR prisms to achieve ATR-FT-IR images with a large FOV and reasonable spatial resolution. The results have shown that a FOV of 10 mm x 14 mm can be obtained with a spatial resolution of approximately 40-60 microm when using an accessory that gives no magnification. A FOV of 1.3 mm x 1.3 mm can be obtained with spatial resolution of approximately 15-20 microm when using a diamond ATR imaging accessory with 4x magnification. No significant change in image quality such as spatial resolution or depth of penetration has been observed across the whole FOV with this method and the measurement time was approximately 15 minutes for an image consisting of 16 image tiles.

High-throughput SNP genotyping of historical and modern samples of five bird species via sequence capture of ultraconserved elements.

PubMed

Lim, Haw Chuan; Braun, Michael J

2016-09-01

Sample availability limits population genetics research on many species, especially taxa from regions with high diversity. However, many such species are well represented in museum collections assembled before the molecular era. Development of techniques to recover genetic data from these invaluable specimens will benefit biodiversity science. Using a mixture of freshly preserved and historical tissue samples, and a sequence capture probe set targeting >5000 loci, we produced high-confidence genotype calls on thousands of single nucleotide polymorphisms (SNPs) in each of five South-East Asian bird species and their close relatives (N = 27-43). On average, 66.2% of the reads mapped to the pseudo-reference genome of each species. Of these mapped reads, an average of 52.7% was identified as PCR or optical duplicates. We achieved deeper effective sequencing for historical samples (122.7×) compared to modern samples (23.5×). The number of nucleotide sites with at least 8× sequencing depth was high, with averages ranging from 0.89 × 10(6)  bp (Arachnothera, modern samples) to 1.98 × 10(6)  bp (Stachyris, modern samples). Linear regression revealed that the amount of sequence data obtained from each historical sample (represented by per cent of the pseudo-reference genome recovered with ≥8× sequencing depth) was positively and significantly (P ≤ 0.013) related to how recently the sample was collected. We observed characteristic post-mortem damage in the DNA of historical samples. However, we were able to reduce the error rate significantly by truncating ends of reads during read mapping (local alignment) and conducting stringent SNP and genotype filtering. © 2016 John Wiley & Sons Ltd.

The representation of visual depth perception based on the plenoptic function in the retina and its neural computation in visual cortex V1.

PubMed

Songnian, Zhao; Qi, Zou; Chang, Liu; Xuemin, Liu; Shousi, Sun; Jun, Qiu

2014-04-23

How it is possible to "faithfully" represent a three-dimensional stereoscopic scene using Cartesian coordinates on a plane, and how three-dimensional perceptions differ between an actual scene and an image of the same scene are questions that have not yet been explored in depth. They seem like commonplace phenomena, but in fact, they are important and difficult issues for visual information processing, neural computation, physics, psychology, cognitive psychology, and neuroscience. The results of this study show that the use of plenoptic (or all-optical) functions and their dual plane parameterizations can not only explain the nature of information processing from the retina to the primary visual cortex and, in particular, the characteristics of the visual pathway's optical system and its affine transformation, but they can also clarify the reason why the vanishing point and line exist in a visual image. In addition, they can better explain the reasons why a three-dimensional Cartesian coordinate system can be introduced into the two-dimensional plane to express a real three-dimensional scene. 1. We introduce two different mathematical expressions of the plenoptic functions, Pw and Pv that can describe the objective world. We also analyze the differences between these two functions when describing visual depth perception, that is, the difference between how these two functions obtain the depth information of an external scene.2. The main results include a basic method for introducing a three-dimensional Cartesian coordinate system into a two-dimensional plane to express the depth of a scene, its constraints, and algorithmic implementation. In particular, we include a method to separate the plenoptic function and proceed with the corresponding transformation in the retina and visual cortex.3. We propose that size constancy, the vanishing point, and vanishing line form the basis of visual perception of the outside world, and that the introduction of a three-dimensional Cartesian coordinate system into a two dimensional plane reveals a corresponding mapping between a retinal image and the vanishing point and line.

The representation of visual depth perception based on the plenoptic function in the retina and its neural computation in visual cortex V1

PubMed Central

2014-01-01

Background How it is possible to “faithfully” represent a three-dimensional stereoscopic scene using Cartesian coordinates on a plane, and how three-dimensional perceptions differ between an actual scene and an image of the same scene are questions that have not yet been explored in depth. They seem like commonplace phenomena, but in fact, they are important and difficult issues for visual information processing, neural computation, physics, psychology, cognitive psychology, and neuroscience. Results The results of this study show that the use of plenoptic (or all-optical) functions and their dual plane parameterizations can not only explain the nature of information processing from the retina to the primary visual cortex and, in particular, the characteristics of the visual pathway’s optical system and its affine transformation, but they can also clarify the reason why the vanishing point and line exist in a visual image. In addition, they can better explain the reasons why a three-dimensional Cartesian coordinate system can be introduced into the two-dimensional plane to express a real three-dimensional scene. Conclusions 1. We introduce two different mathematical expressions of the plenoptic functions, P w and P v that can describe the objective world. We also analyze the differences between these two functions when describing visual depth perception, that is, the difference between how these two functions obtain the depth information of an external scene. 2. The main results include a basic method for introducing a three-dimensional Cartesian coordinate system into a two-dimensional plane to express the depth of a scene, its constraints, and algorithmic implementation. In particular, we include a method to separate the plenoptic function and proceed with the corresponding transformation in the retina and visual cortex. 3. We propose that size constancy, the vanishing point, and vanishing line form the basis of visual perception of the outside world, and that the introduction of a three-dimensional Cartesian coordinate system into a two dimensional plane reveals a corresponding mapping between a retinal image and the vanishing point and line. PMID:24755246

Bayesian depth estimation from monocular natural images.

PubMed

Su, Che-Chun; Cormack, Lawrence K; Bovik, Alan C

2017-05-01

Estimating an accurate and naturalistic dense depth map from a single monocular photographic image is a difficult problem. Nevertheless, human observers have little difficulty understanding the depth structure implied by photographs. Two-dimensional (2D) images of the real-world environment contain significant statistical information regarding the three-dimensional (3D) structure of the world that the vision system likely exploits to compute perceived depth, monocularly as well as binocularly. Toward understanding how this might be accomplished, we propose a Bayesian model of monocular depth computation that recovers detailed 3D scene structures by extracting reliable, robust, depth-sensitive statistical features from single natural images. These features are derived using well-accepted univariate natural scene statistics (NSS) models and recent bivariate/correlation NSS models that describe the relationships between 2D photographic images and their associated depth maps. This is accomplished by building a dictionary of canonical local depth patterns from which NSS features are extracted as prior information. The dictionary is used to create a multivariate Gaussian mixture (MGM) likelihood model that associates local image features with depth patterns. A simple Bayesian predictor is then used to form spatial depth estimates. The depth results produced by the model, despite its simplicity, correlate well with ground-truth depths measured by a current-generation terrestrial light detection and ranging (LIDAR) scanner. Such a strong form of statistical depth information could be used by the visual system when creating overall estimated depth maps incorporating stereopsis, accommodation, and other conditions. Indeed, even in isolation, the Bayesian predictor delivers depth estimates that are competitive with state-of-the-art "computer vision" methods that utilize highly engineered image features and sophisticated machine learning algorithms.

Interferometry on grazing incidence optics

NASA Astrophysics Data System (ADS)

Geary, Joseph M.; Maeda, Riki

1987-12-01

An interfeormetric procedure is described that shows potential for obtaining surface figure error maps of grazing incidence optics at normal incidence. Such optics are found in some laser resonator configurations and in Wolter-type X-ray optics. The procedure makes use of cylindrical wavefronts and error subtraction techniques over subapertures. The surface error maps obtained will provide critical information to opticians for the fabrication process.

Remote sensing of atmospheric optical depth using a smartphone sun photometer.

PubMed

Cao, Tingting; Thompson, Jonathan E

2014-01-01

In recent years, smart phones have been explored for making a variety of mobile measurements. Smart phones feature many advanced sensors such as cameras, GPS capability, and accelerometers within a handheld device that is portable, inexpensive, and consistently located with an end user. In this work, a smartphone was used as a sun photometer for the remote sensing of atmospheric optical depth. The top-of-the-atmosphere (TOA) irradiance was estimated through the construction of Langley plots on days when the sky was cloudless and clear. Changes in optical depth were monitored on a different day when clouds intermittently blocked the sun. The device demonstrated a measurement precision of 1.2% relative standard deviation for replicate photograph measurements (38 trials, 134 datum). However, when the accuracy of the method was assessed through using optical filters of known transmittance, a more substantial uncertainty was apparent in the data. Roughly 95% of replicate smart phone measured transmittances are expected to lie within ±11.6% of the true transmittance value. This uncertainty in transmission corresponds to an optical depth of approx. ±0.12-0.13 suggesting the smartphone sun photometer would be useful only in polluted areas that experience significant optical depths. The device can be used as a tool in the classroom to present how aerosols and gases effect atmospheric transmission. If improvements in measurement precision can be achieved, future work may allow monitoring networks to be developed in which citizen scientists submit acquired data from a variety of locations.

Thin ice clouds in the Arctic: cloud optical depth and particle size retrieved from ground-based thermal infrared radiometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Blanchard, Yann; Royer, Alain; O'Neill, Norman T.

Multiband downwelling thermal measurements of zenith sky radiance, along with cloud boundary heights, were used in a retrieval algorithm to estimate cloud optical depth and effective particle diameter of thin ice clouds in the Canadian High Arctic. Ground-based thermal infrared (IR) radiances for 150 semitransparent ice clouds cases were acquired at the Polar Environment Atmospheric Research Laboratory (PEARL) in Eureka, Nunavut, Canada (80° N, 86° W). We analyzed and quantified the sensitivity of downwelling thermal radiance to several cloud parameters including optical depth, effective particle diameter and shape, water vapor content, cloud geometric thickness and cloud base altitude. A lookupmore » table retrieval method was used to successfully extract, through an optimal estimation method, cloud optical depth up to a maximum value of 2.6 and to separate thin ice clouds into two classes: (1) TIC1 clouds characterized by small crystals (effective particle diameter ≤ 30 µm), and (2) TIC2 clouds characterized by large ice crystals (effective particle diameter > 30 µm). The retrieval technique was validated using data from the Arctic High Spectral Resolution Lidar (AHSRL) and Millimeter Wave Cloud Radar (MMCR). Inversions were performed over three polar winters and results showed a significant correlation ( R 2 = 0.95) for cloud optical depth retrievals and an overall accuracy of 83 % for the classification of TIC1 and TIC2 clouds. A partial validation relative to an algorithm based on high spectral resolution downwelling IR radiance measurements between 8 and 21µm was also performed. It confirms the robustness of the optical depth retrieval and the fact that the broadband thermal radiometer retrieval was sensitive to small particle (TIC1) sizes.« less

Thin ice clouds in the Arctic: cloud optical depth and particle size retrieved from ground-based thermal infrared radiometry

NASA Astrophysics Data System (ADS)

Blanchard, Yann; Royer, Alain; O'Neill, Norman T.; Turner, David D.; Eloranta, Edwin W.

2017-06-01

Multiband downwelling thermal measurements of zenith sky radiance, along with cloud boundary heights, were used in a retrieval algorithm to estimate cloud optical depth and effective particle diameter of thin ice clouds in the Canadian High Arctic. Ground-based thermal infrared (IR) radiances for 150 semitransparent ice clouds cases were acquired at the Polar Environment Atmospheric Research Laboratory (PEARL) in Eureka, Nunavut, Canada (80° N, 86° W). We analyzed and quantified the sensitivity of downwelling thermal radiance to several cloud parameters including optical depth, effective particle diameter and shape, water vapor content, cloud geometric thickness and cloud base altitude. A lookup table retrieval method was used to successfully extract, through an optimal estimation method, cloud optical depth up to a maximum value of 2.6 and to separate thin ice clouds into two classes: (1) TIC1 clouds characterized by small crystals (effective particle diameter ≤ 30 µm), and (2) TIC2 clouds characterized by large ice crystals (effective particle diameter > 30 µm). The retrieval technique was validated using data from the Arctic High Spectral Resolution Lidar (AHSRL) and Millimeter Wave Cloud Radar (MMCR). Inversions were performed over three polar winters and results showed a significant correlation (R2 = 0.95) for cloud optical depth retrievals and an overall accuracy of 83 % for the classification of TIC1 and TIC2 clouds. A partial validation relative to an algorithm based on high spectral resolution downwelling IR radiance measurements between 8 and 21 µm was also performed. It confirms the robustness of the optical depth retrieval and the fact that the broadband thermal radiometer retrieval was sensitive to small particle (TIC1) sizes.

Thin ice clouds in the Arctic: cloud optical depth and particle size retrieved from ground-based thermal infrared radiometry

DOE PAGES

Blanchard, Yann; Royer, Alain; O'Neill, Norman T.; ...

2017-06-09

Multiband downwelling thermal measurements of zenith sky radiance, along with cloud boundary heights, were used in a retrieval algorithm to estimate cloud optical depth and effective particle diameter of thin ice clouds in the Canadian High Arctic. Ground-based thermal infrared (IR) radiances for 150 semitransparent ice clouds cases were acquired at the Polar Environment Atmospheric Research Laboratory (PEARL) in Eureka, Nunavut, Canada (80° N, 86° W). We analyzed and quantified the sensitivity of downwelling thermal radiance to several cloud parameters including optical depth, effective particle diameter and shape, water vapor content, cloud geometric thickness and cloud base altitude. A lookupmore » table retrieval method was used to successfully extract, through an optimal estimation method, cloud optical depth up to a maximum value of 2.6 and to separate thin ice clouds into two classes: (1) TIC1 clouds characterized by small crystals (effective particle diameter ≤ 30 µm), and (2) TIC2 clouds characterized by large ice crystals (effective particle diameter > 30 µm). The retrieval technique was validated using data from the Arctic High Spectral Resolution Lidar (AHSRL) and Millimeter Wave Cloud Radar (MMCR). Inversions were performed over three polar winters and results showed a significant correlation ( R 2 = 0.95) for cloud optical depth retrievals and an overall accuracy of 83 % for the classification of TIC1 and TIC2 clouds. A partial validation relative to an algorithm based on high spectral resolution downwelling IR radiance measurements between 8 and 21µm was also performed. It confirms the robustness of the optical depth retrieval and the fact that the broadband thermal radiometer retrieval was sensitive to small particle (TIC1) sizes.« less

Contamination in the MACHO data set and the puzzle of Large Magellanic Cloud microlensing

NASA Astrophysics Data System (ADS)

Griest, Kim; Thomas, Christian L.

2005-05-01

In a recent series of three papers, Belokurov, Evans & Le Du and Evans & Belokurov reanalysed the MACHO collaboration data and gave alternative sets of microlensing events and an alternative optical depth to microlensing towards the Large Magellanic Cloud (LMC). Although these authors examined less than 0.2 per cent of the data, they reported that by using a neural net program they had reliably selected a better (and smaller) set of microlensing candidates. Estimating the optical depth from this smaller set, they claimed that the MACHO collaboration overestimated the optical depth by a significant factor and that the MACHO microlensing experiment is consistent with lensing by known stars in the Milky Way and LMC. As we show below, the analysis by these authors contains several errors, and as a result their conclusions are incorrect. Their efficiency analysis is in error, and since they did not search through the entire MACHO data set, they do not know how many microlensing events their neural net would find in the data nor what optical depth their method would give. Examination of their selected events suggests that their method misses low signal-to-noise ratio events and thus would have lower efficiency than the MACHO selection criteria. In addition, their method is likely to give many more false positives (non-lensing events identified as lensing). Both effects would increase their estimated optical depth. Finally, we note that the EROS discovery that LMC event 23 is a variable star reduces the MACHO collaboration estimates of optical depth and the Macho halo fraction by around 8 per cent, and does open the question of additional contamination.

Eddington limit for a gaseous stratus with finite optical depth

NASA Astrophysics Data System (ADS)

Fukue, Jun

2015-06-01

The Eddington luminosity of a spherical source is usually defined for a uniformly extending normal plasma. We usually suppose that the gas can accrete to the central object at the sub-Eddington luminosity, while it would be blown off from the central luminous source in the super-Eddington case. We reconsider this central dogma of the Eddington limit under the radiative transfer effect for the purely scattering case, using analytical and numerical methods. For the translucent isolated gas cloud (stratus) with finite optical depth, the concept of the Eddington luminosity is drastically changed. In an heuristic way, we find that the critical condition is approximately expressed as Γ = (1 + μ* + τc)/2, where Γ (=L/LE) is the central luminosity L normalized by the Eddington luminosity LE, τc is the optical depth of the stratus, and μ* (=√{1-R_*^2/R^2}) is the direction cosine of the central object, R* being the radius of the central object, and R the distance from the central object. When the optical depth of the stratus is around unity, the classical Eddington limit roughly holds for the stratus; Γ ˜ 1. However, when the optical depth is greater than unity, the critical condition becomes roughly Γ ˜ τc/2, and the stratus would infall on to the central source even at the highly super-Eddington luminosity. When the optical depth is less than unity, on the other hand, the critical condition reduces to Γ ≳ (1 + μ*)/2, and the stratus could be blown off in some limited ranges, depending on μ*. This new concept of the Eddington limit for the isolated stratus could drastically change the accretion and outflow physics of highly inhomegeneous plasmas, with relevance for astrophysical jets and winds and supermassive black hole formation.

Mode-selective mapping and control of vectorial nonlinear-optical processes in multimode photonic-crystal fibers.

PubMed

Hu, Ming-Lie; Wang, Ching-Yue; Song, You-Jian; Li, Yan-Feng; Chai, Lu; Serebryannikov, Evgenii; Zheltikov, Aleksei

2006-02-06

We demonstrate an experimental technique that allows a mapping of vectorial nonlinear-optical processes in multimode photonic-crystal fibers (PCFs). Spatial and polarization modes of PCFs are selectively excited in this technique by varying the tilt angle of the input beam and rotating the polarization of the input field. Intensity spectra of the PCF output plotted as a function of the input field power and polarization then yield mode-resolved maps of nonlinear-optical interactions in multimode PCFs, facilitating the analysis and control of nonlinear-optical transformations of ultrashort laser pulses in such fibers.

Updates to Enhanced Geothermal System Resource Potential Estimate

DOE Office of Scientific and Technical Information (OSTI.GOV)

Augustine, Chad

The deep EGS electricity generation resource potential estimate maintained by the National Renewable Energy Laboratory was updated using the most recent temperature-at-depth maps available from the Southern Methodist University Geothermal Laboratory. The previous study dates back to 2011 and was developed using the original temperature-at-depth maps showcased in the 2006 MIT Future of Geothermal Energy report. The methodology used to update the deep EGS resource potential is the same as in the previous study and is summarized in the paper. The updated deep EGS resource potential estimate was calculated for depths between 3 and 7 km and is binned inmore » 25 degrees C increments. The updated deep EGS electricity generation resource potential estimate is 4,349 GWe. A comparison of the estimates from the previous and updated studies shows a net increase of 117 GWe in the 3-7 km depth range, due mainly to increases in the underlying temperature-at-depth estimates from the updated maps.« less

Update to Enhanced Geothermal System Resource Potential Estimate: Preprint

DOE Office of Scientific and Technical Information (OSTI.GOV)

Augustine, Chad

2016-10-01

The deep EGS electricity generation resource potential estimate maintained by the National Renewable Energy Laboratory was updated using the most recent temperature-at-depth maps available from the Southern Methodist University Geothermal Laboratory. The previous study dates back to 2011 and was developed using the original temperature-at-depth maps showcased in the 2006 MIT Future of Geothermal Energy report. The methodology used to update the deep EGS resource potential is the same as in the previous study and is summarized in the paper. The updated deep EGS resource potential estimate was calculated for depths between 3 and 7 km and is binned inmore » 25 degrees C increments. The updated deep EGS electricity generation resource potential estimate is 4,349 GWe. A comparison of the estimates from the previous and updated studies shows a net increase of 117 GWe in the 3-7 km depth range, due mainly to increases in the underlying temperature-at-depth estimates from the updated maps.« less

Flooding Hazard Maps of Different Land Uses in Subsidence Area

NASA Astrophysics Data System (ADS)

Lin, Yongjun; Chang, Hsiangkuan; Tan, Yihchi

2017-04-01

This study aims on flooding hazard maps of different land uses in the subsidence area of southern Taiwan. Those areas are low-lying due to subsidence resulting from over pumping ground water for aquaculture. As a result, the flooding due to storm surges and extreme rainfall are frequent in this area and are expected more frequently in the future. The main land uses there include: residence, fruit trees, and aquaculture. The hazard maps of the three land uses are investigated. The factors affecting hazards of different land uses are listed below. As for residence, flooding depth, duration of flooding, and rising rate of water surface level are factors affecting its degree of hazard. High flooding depth, long duration of flooding, and fast rising rate of water surface make residents harder to evacuate. As for fruit trees, flooding depth and duration of flooding affects its hazard most due to the root hypoxia. As for aquaculture, flooding depth affects its hazard most because the high flooding depth may cause the fish flush out the fishing ponds. An overland flow model is used for simulations of hydraulic parameters for factors such as flooding depth, rising rate of water surface level and duration of flooding. As above-mentioned factors, the hazard maps of different land uses can be made and high hazardous are can also be delineated in the subsidence areas.

A promising tool for subsurface permafrost mapping-An application of airborne geophysics from the Yukon River Basin, Alaska

USGS Publications Warehouse

Abraham, Jared E.

2011-01-01

In the area of Fort Yukon, the AEM survey shows elevated resistivities extending to depth, likely indicative of thick permafrost. This depth corresponds well to observations from a borehole drilled in the area in the late 1990s, which detected permafrost to a depth of about 100 meters (Clark and others, 2009). In contrast to the area of Fort Yukon, the Yukon River and its floodplain are not associated with deep resistive sediments, suggesting a lack of deep permafrost, at least within the depth range of the AEM mapping (fig. 3).

Method for the Preparation of Hazard Map in Urban Area Using Soil Depth and Groundwater Level

NASA Astrophysics Data System (ADS)

Kim, Sung-Wook; Choi, Eun-Kyeong; Cho, Jin Woo; Lee, Ju-Hyoung

2017-04-01

The hazard maps for predicting collapse on natural slopes consists of a combination of topographic, hydrological, and geological factors. Topographic factors are extracted from DEM, including aspect, slope, curvature, and topographic index. Hydrological factors, such as distance to drainage, drainage density, stream-power index, and wetness index are most important factors for slope instability. However, most of the urban areas are located on the plains and it is difficult to apply the hazard map using the topography and hydrological factors. In order to evaluate the risk of collapse of flat and low slope areas, soil depth and groundwater level data were collected and used as a factor for interpretation. In addition, the reliability of the hazard map was compared with the disaster history of the study area (Gangnam-gu and Yeouido district). In the disaster map of the disaster prevention agency, the urban area was mostly classified as the stable area and did not reflect the collapse history. Soil depth, drainage conditions and groundwater level obtained from boreholes were added as input data of hazard map, and disaster vulnerability increased at the location where the actual collapse points. In the study area where damage occurred, the moderate and low grades of the vulnerability of previous hazard map were 12% and 88%, respectively. While, the improved map showed 2% high grade, moderate grade 29%, low grade 66% and very low grade 2%. These results were similar to actual damage. Keywords: hazard map, urban area, soil depth, ground water level Acknowledgement This research was supported by a Grant from a Strategic Research Project (Horizontal Drilling and Stabilization Technologies for Urban Search and Rescue (US&R) Operation) funded by the Korea Institute of Civil Engineering and Building Technology.

A COMPARISON OF AEROSOL OPTICAL DEPTH SIMULATED USING CMAQ WITH SATELLITE ESTIMATES

EPA Science Inventory

Satellite data provide new opportunities to study the regional distribution of particulate matter. The aerosol optical depth (AOD) - a derived estimate from the satellite measured irradiance, can be compared against model derived estimate to provide an evaluation of the columnar ...

3D Radiative Aspects of the Increased Aerosol Optical Depth Near Clouds

NASA Technical Reports Server (NTRS)

Marshak, Alexander; Wen, Guoyong; Remer, Lorraine; Cahalan, Robert; Coakley, Jim

2007-01-01

To characterize aerosol-cloud interactions it is important to correctly retrieve aerosol optical depth in the vicinity of clouds. It is well reported in the literature that aerosol optical depth increases with cloud cover. Part of the increase comes from real physics as humidification; another part, however, comes from 3D cloud effects in the remote sensing retrievals. In many cases it is hard to say whether the retrieved increased values of aerosol optical depth are remote sensing artifacts or real. In the presentation, we will discuss how the 3D cloud affects can be mitigated. We will demonstrate a simple model that can assess the enhanced illumination of cloud-free columns in the vicinity of clouds. This model is based on the assumption that the enhancement in the cloud-free column radiance comes from the enhanced Rayleigh scattering due to presence of surrounding clouds. A stochastic cloud model of broken cloudiness is used to simulate the upward flux.

Relating Line Width and Optical Depth for CO Emission in the Large Mgellanic Cloud

NASA Astrophysics Data System (ADS)

Wojciechowski, Evan; Wong, Tony; Bandurski, Jeffrey; MC3 (Mapping CO in Molecular Clouds in the Magellanic Clouds) Team

2018-01-01

We investigate data produced from ALMA observations of giant molecular clouds (GMCs) located in the Large Magellanic Cloud (LMC), using 12CO(2–1) and 13CO(2–1) emission. The spectral line width is generally interpreted as tracing turbulent rather than thermal motions in the cloud, but could also be affected by optical depth, especially for the 12CO line (Hacar et al. 2016). We compare the spectral line widths of both lines with their optical depths, estimated from an LTE analysis, to evaluate the importance of optical depth effects. Our cloud sample includes two regions recently published by Wong et al. (2017, submitted): the Tarantula Nebula or 30 Dor, an HII region rife with turbulence, and the Planck cold cloud (PCC), located in a much calmer environment near the fringes of the LMC. We also include four additional LMC clouds, which span intermediate levels of star formation relative to these two clouds, and for which we have recently obtained ALMA data in Cycle 4.

Airborne measurements of multi-wavelength aerosol optical depth and cloud-transmitted radiances in the North Atlantic Aerosols and Marine Ecosystems Study (NAAMES)

NASA Astrophysics Data System (ADS)

Shinozuka, Y.; Johnson, R. R.; LeBlanc, S. E.; Chang, C. S.; Redemann, J.

2016-12-01

We report on our recent airborne measurements of multi-wavelength aerosol optical depth and cloud-transmitted radiances over the North Atlantic. We ran the Spectrometer for Sky-Scanning, Sun-Tracking Atmospheric Research (4STAR) in November 2015 and the 14-channel Ames Airborne Tracking Sunphotometer (AATS-14) in May and June 2016, both aboard the NASA C-130 aircraft. These sunphotometers provide measurements of overlying cirrus and aerosol optical depths of up to about 0.5 and constrain ecosystem and aerosol retrievals from the accompanying nadir-viewing remote sensing instruments. In addition, 4STAR measures hyperspectral transmitted light, which enables the retrieval of cloud optical depth, effective radius, and thermodynamic phase from below cloud. Our measurements contribute to the science objectives of the North Atlantic Aerosols and Marine Ecosystems Study (NAAMES), an interdisciplinary investigation resolving key processes controlling marine ecosystems and aerosols that are essential to our understanding of Earth system function and future change.

Microbial genome sequencing using optical mapping and Illumina sequencing

USDA-ARS?s Scientific Manuscript database

Introduction Optical mapping is a technique in which strands of genomic DNA are digested with one or more restriction enzymes, and a physical map of the genome constructed from the resulting image. In outline, genomic DNA is extracted from a pure culture, linearly arrayed on a specialized glass sli...

Shaded seafloor relief, backscatter strength, and surficial geology; German Bank, Scotian Shelf, offshore Nova Scotia

USGS Publications Warehouse

Todd, B.J.; Valentine, Page C.

2010-01-01

This map is part of a three-map series of German Bank, located on the Scotian Shelf off southern Nova Scotia.  This map is the product of a number of surveys (1997-2003) that used a multibeam sonar system to map 5321 km2 of the seafloor.  Other surveys collected geological data for scientific interpretation.  This map sheet shows the seafloor topography of German Bank in shaded-relief view and seafloor depth (coded by colour) at a scale of 1:1000,000.  Topographic contours generated from the multibeam data are shown (in white) on the colour-coded multibeam topography at a depth interval of 20 m.  Bathymetic contours (in blue) outside the multibeam survey area, presented at a depth interval of 10 m, are from the Natural Resource Map series (Canadian Hydrographic Service, 1967, 1971a, 1971b, 1972). Sheet 2 shows coloured backscatter strength in shaded-relief view.  Sheet 3 shows seafloor topography in shaded-relief view with colour-coded surficial geological units.

Shotgun Optical Maps of the Whole Escherichia coli O157:H7 Genome

PubMed Central

Lim, Alex; Dimalanta, Eileen T.; Potamousis, Konstantinos D.; Yen, Galex; Apodoca, Jennifer; Tao, Chunhong; Lin, Jieyi; Qi, Rong; Skiadas, John; Ramanathan, Arvind; Perna, Nicole T.; Plunkett, Guy; Burland, Valerie; Mau, Bob; Hackett, Jeremiah; Blattner, Frederick R.; Anantharaman, Thomas S.; Mishra, Bhubaneswar; Schwartz, David C.

2001-01-01

We have constructed NheI and XhoI optical maps of Escherichia coli O157:H7 solely from genomic DNA molecules to provide a uniquely valuable scaffold for contig closure and sequence validation. E. coli O157:H7 is a common pathogen found in contaminated food and water. Our approach obviated the need for the analysis of clones, PCR products, and hybridizations, because maps were constructed from ensembles of single DNA molecules. Shotgun sequencing of bacterial genomes remains labor-intensive, despite advances in sequencing technology. This is partly due to manual intervention required during the last stages of finishing. The applicability of optical mapping to this problem was enhanced by advances in machine vision techniques that improved mapping throughput and created a path to full automation of mapping. Comparisons were made between maps and sequence data that characterized sequence gaps and guided nascent assemblies. PMID:11544203

Aerosol Optical Depth Determinations for BOREAS

NASA Technical Reports Server (NTRS)

Wrigley, R. C.; Livingston, J. M.; Russell, P. B.; Guzman, R. P.; Ried, D.; Lobitz, B.; Peterson, David L. (Technical Monitor)

1994-01-01

Automated tracking sun photometers were deployed by NASA/Ames Research Center aboard the NASA C-130 aircraft and at a ground site for all three Intensive Field Campaigns (IFCs) of the Boreal Ecosystem-Atmosphere Study (BOREAS) in central Saskatchewan, Canada during the summer of 1994. The sun photometer data were used to derive aerosol optical depths for the total atmospheric column above each instrument. The airborne tracking sun photometer obtained data in both the southern and northern study areas at the surface prior to takeoff, along low altitude runs near the ground tracking sun photometer, during ascents to 6-8 km msl, along remote sensing flightlines at altitude, during descents to the surface, and at the surface after landing. The ground sun photometer obtained data from the shore of Candle Lake in the southern area for all cloud-free times. During the first IFC in May-June ascents and descents of the airborne tracking sun photometer indicated the aerosol optical depths decreased steadily from the surface to 3.5 kni where they leveled out at approximately 0.05 (at 525 nm), well below levels caused by the eruption of Mt. Pinatubo. On a very clear day, May 31st, surface optical depths measured by either the airborne or ground sun photometers approached those levels (0.06-0.08 at 525 nm), but surface optical depths were often several times higher. On June 4th they increased from 0.12 in the morning to 0.20 in the afternoon with some evidence of brief episodes of pollen bursts. During the second IFC surface aerosol optical depths were variable in the extreme due to smoke from western forest fires. On July 20th the aerosol optical depth at 525 nm decreased from 0.5 in the morning to 0.2 in the afternoon; they decreased still further the next day to 0.05 and remained consistently low throughout the day to provide excellent conditions for several remote sensing missions flown that day. Smoke was heavy for the early morning of July 24th but cleared partially by 10:30 local time and cleared fully by 11:30. Heavy smoke characterized the rest of the IFC in both study areas.

An image-space parallel convolution filtering algorithm based on shadow map

NASA Astrophysics Data System (ADS)

Li, Hua; Yang, Huamin; Zhao, Jianping

2017-07-01

Shadow mapping is commonly used in real-time rendering. In this paper, we presented an accurate and efficient method of soft shadows generation from planar area lights. First this method generated a depth map from light's view, and analyzed the depth-discontinuities areas as well as shadow boundaries. Then these areas were described as binary values in the texture map called binary light-visibility map, and a parallel convolution filtering algorithm based on GPU was enforced to smooth out the boundaries with a box filter. Experiments show that our algorithm is an effective shadow map based method that produces perceptually accurate soft shadows in real time with more details of shadow boundaries compared with the previous works.

Estimation of the optical errors on the luminescence imaging of water for proton beam

NASA Astrophysics Data System (ADS)

Yabe, Takuya; Komori, Masataka; Horita, Ryo; Toshito, Toshiyuki; Yamamoto, Seiichi

2018-04-01

Although luminescence imaging of water during proton-beam irradiation can be applied to range estimation, the height of the Bragg peak of the luminescence image was smaller than that measured with an ionization chamber. We hypothesized that the reasons of the difference were attributed to the optical phenomena; parallax errors of the optical system and the reflection of the luminescence from the water phantom. We estimated the errors cause by these optical phenomena affecting the luminescence image of water. To estimate the parallax error on the luminescence images, we measured the luminescence images during proton-beam irradiation using a cooled charge-coupled camera by changing the heights of the optical axis of the camera from those of the Bragg peak. When the heights of the optical axis matched to the depths of the Bragg peak, the Bragg peak heights in the depth profiles were the highest. The reflection of the luminescence of water with a black wall phantom was slightly smaller than that with a transparent phantom and changed the shapes of the depth profiles. We conclude that the parallax error significantly affects the heights of the Bragg peak and the reflection of the phantom affects the shapes of depth profiles of the luminescence images of water.

Improving depth maps of plants by using a set of five cameras

NASA Astrophysics Data System (ADS)

Kaczmarek, Adam L.

2015-03-01

Obtaining high-quality depth maps and disparity maps with the use of a stereo camera is a challenging task for some kinds of objects. The quality of these maps can be improved by taking advantage of a larger number of cameras. The research on the usage of a set of five cameras to obtain disparity maps is presented. The set consists of a central camera and four side cameras. An algorithm for making disparity maps called multiple similar areas (MSA) is introduced. The algorithm was specially designed for the set of five cameras. Experiments were performed with the MSA algorithm and the stereo matching algorithm based on the sum of sum of squared differences (sum of SSD, SSSD) measure. Moreover, the following measures were included in the experiments: sum of absolute differences (SAD), zero-mean SAD (ZSAD), zero-mean SSD (ZSSD), locally scaled SAD (LSAD), locally scaled SSD (LSSD), normalized cross correlation (NCC), and zero-mean NCC (ZNCC). Algorithms presented were applied to images of plants. Making depth maps of plants is difficult because parts of leaves are similar to each other. The potential usability of the described algorithms is especially high in agricultural applications such as robotic fruit harvesting.

Depth-color fusion strategy for 3-D scene modeling with Kinect.

PubMed

Camplani, Massimo; Mantecon, Tomas; Salgado, Luis

2013-12-01

Low-cost depth cameras, such as Microsoft Kinect, have completely changed the world of human-computer interaction through controller-free gaming applications. Depth data provided by the Kinect sensor presents several noise-related problems that have to be tackled to improve the accuracy of the depth data, thus obtaining more reliable game control platforms and broadening its applicability. In this paper, we present a depth-color fusion strategy for 3-D modeling of indoor scenes with Kinect. Accurate depth and color models of the background elements are iteratively built, and used to detect moving objects in the scene. Kinect depth data is processed with an innovative adaptive joint-bilateral filter that efficiently combines depth and color by analyzing an edge-uncertainty map and the detected foreground regions. Results show that the proposed approach efficiently tackles main Kinect data problems: distance-dependent depth maps, spatial noise, and temporal random fluctuations are dramatically reduced; objects depth boundaries are refined, and nonmeasured depth pixels are interpolated. Moreover, a robust depth and color background model and accurate moving objects silhouette are generated.

Comparison of Aerosol Optical Depth from Four Solar Radiometers During the Fall 1997 ARM Intensive Observation Period

NASA Technical Reports Server (NTRS)

Schmid, B.; Michalsky, J.; Halthore, R.; Beauharnois, M.; Harrison, L.; Livingston, J.; Russell, P.; Holben, B.; Eck, T.; Smirnov, A.

2000-01-01

In the Fall of 1997 the Atmospheric Radiation Measurement (ARM) program conducted an Intensive Observation Period (IOP) to study aerosols. Five sun-tracking radiometers were present to measure the total column aerosol optical depth. This comparison performed on the Southern Great Plains (SGP) demonstrates the capabilities and limitations of modern tracking sunphotometers at a location typical of where aerosol measurements are required. The key result was agreement in aerosol optical depth measured by 4 of the 5 instruments within 0.015 (rms). The key to this level of agreement was meticulous care in the calibrations of the instruments.

Ground and Airborne Methane Measurements using Optical Parametric Amplifiers

NASA Technical Reports Server (NTRS)

Riris, Haris; Numata, Kenji; Li, Steve; Wu, Stewart; Kawa, Stephan R.; Abshire, James; Dawsey, Martha; Ramanathan, Anand

2012-01-01

We report on an initial airborne demonstration of atmospheric methane column measurements at 1.65 micrometers using a widely tunable, seeded optical parametric amplifier (OPA) lidar and a photon counting detector. Methane is an important greenhouse gas and accurate knowledge of its sources and sinks is needed for climate modeling. Our lidar system uses 20 pulses at increasing wavelengths and integrated path differential absorption (IPDA) to map a methane line at 1650.9 nanometers. The wavelengths are generated by using a Nd:YAG pump laser at 1064.5 nanometers and distributed feedback diode laser at 1650.9 nanometers and a periodically-poled lithium niobate (PPLN) crystal. The pulse width was 3 nanoseconds and the pulse repetition rate was 6.28 KHz. The outgoing energy was approximately 13 microJoules/pulse. A commercial 20 nanometer diameter fiber-coupled telescope with a photon counting detector operated in analog mode with a 0.8 nanometer bandpass filter was used as the lidar receiver. The lidar system was integrated on NASA's DC-8 flying laboratory, based at Dryden Airborne operations Facility (DAOF) in Palmdale CA. Three flights were performed in the central valley of California. Each flight lasted about 2.5 hours and it consisted of several flight segments at constant altitudes at approximately 3, 4.5, 6, 7.6, 9.1, 10.6 km (l0, 15, 20, 25, 30, 35 kft). An in-situ cavity ring down spectrometer made by Picarro Inc. was flown along with the lidar instrument provided us with the "truth" i.e. the local CH4, CO2 and H2O concentrations at the constant flight altitude segments. Using the aircraft's altitude, GPS, and meteorological data we calculated the theoretical differential optical depth of the methane absorption at increasing altitudes. Our results showed good agreement between the experimentally derived optical depth measurements from the lidar instrument and theoretical calculations as the flight altitude was increased from 3 to 10.6 kilometers, assuming a constant methane mixing ratio of 1.8 parts per million. The in-situ spectrometer did not show any significant deviations from the ambient concentrations. Further analysis using meteorological data from the Global Modeling and Assimilation Office (http://gmao.gsfc.nasa.gov/) to derive the theoretical optical depth also showed good agreement with the experimentally derived values. The OPA lidar system with slight modifications has also been used to measure CO2, water vapor, and CO in the near and mid-infrared spectral regions on the ground.

Microstructural Characteristics of High Rate Plastic Deformation in Elektron™ WE43 Magnesium Alloy

NASA Astrophysics Data System (ADS)

Hamilton, Joseph; Brennan, Sarah T.; Sohn, Yongho; Davis, Bruce; DeLorme, Rick; Cho, Kyu

High strain rate deformation of WE43 magnesium alloy was carried out by high velocity impacts, and the characteristics and mechanisms of microstructural damage were examined. Six samples were subjected to a variety of high velocity impact loadings that resulted in both partial and full damage. Optical, scanning and transmission electron microscopy analyses were performed in order to identify regions of shear localization. These regions were used to map, both quantitatively and qualitatively, the effects of deformation on the microstructure. Shear localization was observed in every sample, and its depth was measured. Evidence of shear localization was observed to a greater extent in samples with partial damage while fracturing was observed more frequently in samples with full damage.

PAH 8μm Emission as a Diagnostic of HII Region Optical Depth

NASA Astrophysics Data System (ADS)

Oey, M. S.; Lopez-Hernandez, J.; Kellar, J. A.; Pellegrini, E. W.; Gordon, Karl D.; Jameson, Katherine; Li, Aigen; Madden, Suzanne C.; Meixner, Margaret; Roman-Duval, Julia; Bot, Caroline; Rubio, Monica; Tielens, A. G. G. M.

2017-01-01

PAHs are easily destroyed by Lyman continuum radiation and so in optically thick Stromgren spheres, they tend to be found only on the periphery of HII regions, rather than in the central volume. We therefore expect that in HII regions that are optically thin to ionizing radiation, PAHs would be destroyed beyond the primary nebular structure. Using data from the Spitzer SAGE survey of the Magellanic Clouds, we test whether 8 μm emission can serve as a diagnostic of optical depth in HII regions. We find that 8 μm emission does provide valuable constraints in the Large Magellanic Cloud, where objects identified as optically thick by their atomic ionization structure have 6 times higher median 8 μm surface brightness than optically thin objects. However, in the Small Magellanic Cloud, this differentiation is not observed. This appears to be caused by extremely low PAH production in this low-metallicity environment, such that any differentiation between optically thick and thin objects is washed out by stochastic variations, likely driven by the interplay between dust production and UV destruction. Thus, PAH emission is sensitive to nebular optical depth only at higher metallicities.

A COMPARISON OF AEROSOL OPTICAL DEPTH SIMULATED USING CMAQ WITH SATELLITE ESTIMATES

EPA Science Inventory

Satellite data provide new opportunities to study the regional distribution of particulate matter.

The aerosol optical depth (AOD) - a derived estimate from the satellite-measured radiance, can be compared against model estimates to provide an evaluation of the columnar ae...

Relative skills of soil moisture and vegetation optical depth retrievals for agricultural drought monitoring

USDA-ARS?s Scientific Manuscript database

Soil moisture condition is an important indicator for agricultural drought monitoring. Through the Land Parameter Retrieval Model (LPRM), vegetation optical depth (VOD) as well as surface soil moisture (SM) can be retrieved simultaneously from brightness temperature observations from the Advanced Mi...

Retrieval of Surface Lambert Albedos and Aerosols Optical Depths Using OMEGA Near-IR EPF Observations of Mars

NASA Astrophysics Data System (ADS)

Vincendon, M.; Langevin, Y.; Poulet, F.; Bibring, J.-P.; Gondet, B.

2007-03-01

We have analyzed five EPF sequences acquired by OMEGA/Mars Express in the near-IR over ice-free and ice-covered surfaces to retrieve simultaneously the Lambert albedo of the surface and the optical depth of aerosols.

Metrological characterization methods for confocal chromatic line sensors and optical topography sensors

NASA Astrophysics Data System (ADS)

Seppä, Jeremias; Niemelä, Karri; Lassila, Antti

2018-05-01

The increasing use of chromatic confocal technology for, e.g. fast, in-line optical topography, and measuring thickness, roughness and profiles implies a need for the characterization of various aspects of the sensors. Single-point, line and matrix versions of chromatic confocal technology, encoding depth information into wavelength, have been developed. Of these, line sensors are particularly suitable for in-line process measurement. Metrological characterization and development of practical methods for calibration and checking is needed for new optical methods and devices. Compared to, e.g. tactile methods, optical topography measurement techniques have limitations related to light wavelength and coherence, optical properties of the sample including reflectivity, specularity, roughness and colour, and definition of optical versus mechanical surfaces. In this work, metrological characterization methods for optical line sensors were developed for scale magnification and linearity, sensitivity to sample properties, and dynamic characteristics. An accurate depth scale calibration method using a single prototype groove depth sample was developed for a line sensor and validated with laser-interferometric sample tracking, attaining (sub)micrometre level or better than 0.1% scale accuracy. Furthermore, the effect of different surfaces and materials on the measurement and depth scale was studied, in particular slope angle, specularity and colour. In addition, dynamic performance, noise, lateral scale and resolution were measured using the developed methods. In the case of the LCI1200 sensor used in this study, which has a 11.3 mm  ×  2.8 mm measurement range, the instrument depth scale was found to depend only minimally on sample colour, whereas measuring steeply sloped specular surfaces in the peripheral measurement area, in the worst case, caused a somewhat larger relative sample-dependent change (1%) in scale.

Femtosecond writing of near-surface waveguides in lithium niobate for low-loss electro-optical modulators of broadband emission

NASA Astrophysics Data System (ADS)

Bukharin, Mikhail A.; Skryabin, Nikolay N.; Khudyakov, Dmitriy V.; Vartapetov, Sergey K.

2016-05-01

In the investigation we demonstrated technique of direct femtosecond laser writing of tracks with induced refractive index at record low depth under surface of lithium niobate (3-15 μm). It was shown that with the help of proposed technique one can be written claddings of near surface optical waveguides that plays a key role in fabrication of fast electro-optical modulators with low operating voltage. Fundamental problem resolved in the investigation consists in suppression of negative factors impeding femtosecond inscription of waveguides at low depths. To prevent optical breakdown of crystal surface we used high numerical aperture objectives for focusing of light. It was shown, that advanced heat accumulation regime of femtosecond inscription is inapplicable for writing of near-surface waveguides, and near the surface waveguides should be written in non-thermal regime in contrast to widespread femtosecond writing at depths of tens micrometers. Inscribed waveguides were examined for optical losses and polarization properties. It was experimentally shown, that femtosecond written near surface waveguides have such advantages over widely used proton exchanged and Ti-diffusion waveguides as lower optical losses (down to 0.3 dB/cm) and maintaining of all polarization states of propagation light, which is crucial for development of electro-optical modulators for broadband and ultrashort laser emission. Novelty of the results consists in technique of femtosecond inscription of waveguides at record low depths under the surface of crystals. As compared to previous investigations in the field (structures at depths near 50 um with buried electrodes), the obtained waveguides could be used with simple closely adjacent on-surface electrodes.

Aerosol Optical Depth as Observed by the Mars Science Laboratory REMS UV Photodiodes

NASA Technical Reports Server (NTRS)

Smith, M. D.; Zorzano, M.-P.; Lemmon, M.; Martin-Torres, J.; Mendaza de Cal, T.

2017-01-01

Systematic observations taken by the REMS UV photodiodes on a daily basis throughout the landed Mars Science Laboratory mission provide a highly useful tool for characterizing aerosols above Gale Crater. Radiative transfer modeling is used to model the approximately two Mars Years of observations taken to date taking into account multiple scattering from aerosols and the extended field of view of the REMS UV photodiodes. The retrievals show in detail the annual cycle of aerosol optical depth, which is punctuated with numerous short timescale events of increased optical depth. Dust deposition onto the photodiodes is accounted for by comparison with aerosol optical depth derived from direct imaging of the Sun by Mastcam. The effect of dust on the photodiodes is noticeable, but does not dominate the signal. Cleaning of dust from the photodiodes was observed in the season around Ls=270deg, but not during other seasons. Systematic deviations in the residuals from the retrieval fit are indicative of changes in aerosol effective particle size, with larger particles present during periods of increased optical depth. This seasonal dependence of aerosol particle size is expected as dust activity injects larger particles into the air, while larger aerosols settle out of the atmosphere more quickly leading to a smaller average particle size over time. A full description of these observations, the retrieval algorithm, and the results can be found in Smith et al. (2016).

A comparison of hydrographically and optically derived mixed layer depths

USGS Publications Warehouse

Zawada, D.G.; Zaneveld, J.R.V.; Boss, E.; Gardner, W.D.; Richardson, M.J.; Mishonov, A.V.

2005-01-01

Efforts to understand and model the dynamics of the upper ocean would be significantly advanced given the ability to rapidly determine mixed layer depths (MLDs) over large regions. Remote sensing technologies are an ideal choice for achieving this goal. This study addresses the feasibility of estimating MLDs from optical properties. These properties are strongly influenced by suspended particle concentrations, which generally reach a maximum at pycnoclines. The premise therefore is to use a gradient in beam attenuation at 660 nm (c660) as a proxy for the depth of a particle-scattering layer. Using a global data set collected during World Ocean Circulation Experiment cruises from 1988-1997, six algorithms were employed to compute MLDs from either density or temperature profiles. Given the absence of published optically based MLD algorithms, two new methods were developed that use c660 profiles to estimate the MLD. Intercomparison of the six hydrographically based algorithms revealed some significant disparities among the resulting MLD values. Comparisons between the hydrographical and optical approaches indicated a first-order agreement between the MLDs based on the depths of gradient maxima for density and c660. When comparing various hydrographically based algorithms, other investigators reported that inherent fluctuations of the mixed layer depth limit the accuracy of its determination to 20 m. Using this benchmark, we found a ???70% agreement between the best hydrographical-optical algorithm pairings. Copyright 2005 by the American Geophysical Union.

Grain size mapping in shallow rivers using spectral information: a lab spectroradiometry perspective

NASA Astrophysics Data System (ADS)

Niroumand-Jadidi, Milad; Vitti, Alfonso

2017-10-01

Every individual attribute of a riverine environment defines the overall spectral signature to be observed by an optical sensor. The spectral characteristic of riverbed is influenced not only by the type but also the roughness of substrates. Motivated by this assumption, potential of optical imagery for mapping grain size of shallow rivers (< 1 m deep) is examined in this research. The previous studies concerned with grain size mapping are all built upon the texture analysis of exposed bed material using very high resolution (i.e. cm resolution) imagery. However, the application of texturebased techniques is limited to very low altitude sensors (e.g. UAVs) to ensure the sufficient spatial resolution. Moreover, these techniques are applicable only in the presence of exposed substrates along the river channel. To address these drawbacks, this study examines the effectiveness of spectral information to make distinction among grain sizes for submerged substrates. Spectroscopic experiments are performed in controlled condition of a hydraulic lab. The spectra are collected over a water flume in a range of water depths and bottoms with several grain sizes. A spectral convolution is performed to match the spectra to WorldView-2 spectral bands. The material type of substrates is considered the same for all the experiments with only variable roughness/size of grains. The spectra observed over dry beds revealed that the brightness/reflectance increases with the grain size across all the spectral bands. Based on this finding, the above-water spectra over a river channel are simulated considering different grain sizes in the bottom. A water column correction method is then used to retrieve the bottom reflectances. Then the inferred bottom reflectances are clustered to segregate among grain sizes. The results indicate high potential of the spectral approach for clustering grain sizes (overall accuracy of 92%) which opens up some horizons for mapping this valuable attribute of rivers using remotely sensed data.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Atrio-Barandela, F.; Kashlinsky, A., E-mail: atrio@usal.es, E-mail: Alexander.Kashlinsky@nasa.gov

The epoch of first star formation and the state of the intergalactic medium (IGM) at that time are not directly observable with current telescopes. The radiation from those early sources is now part of the cosmic infrared background (CIB) and, as these sources ionize the gas around them, the IGM plasma would produce faint temperature anisotropies in the cosmic microwave background (CMB) via the thermal Sunyaev-Zeldovich (TSZ) effect. While these TSZ anisotropies are too faint to be detected, we show that the cross-correlation of maps of source-subtracted CIB fluctuations from Euclid, with suitably constructed microwave maps at different frequencies, canmore » probe the physical state of the gas during reionization and test/constrain models of the early CIB sources. We identify the frequency-combined, CMB-subtracted microwave maps from space- and ground-based instruments to show that they can be cross-correlated with the forthcoming all-sky Euclid CIB maps to detect the cross-power at scales ∼5'-60' with signal-to-noise ratios (S/Ns) of up to S/N ∼ 4-8 depending on the contribution to the Thomson optical depth during those pre-reionization epochs (Δτ ≅ 0.05) and the temperature of the IGM (up to ∼10{sup 4} K). Such a measurement would offer a new window to explore the emergence and physical properties of these first light sources.« less

Global Scale Simultaneous Retrieval of Smoothened Vegetation Optical Depth and Surface Roughness Parameter using AMSR-E X-band Observations

NASA Astrophysics Data System (ADS)

Lanka, Karthikeyan; Pan, Ming; Konings, Alexandra; Piles, María; D, Nagesh Kumar; Wood, Eric

2017-04-01

Traditionally, passive microwave retrieval algorithms such as Land Parameter Retrieval Model (LPRM) estimate simultaneously soil moisture and Vegetation Optical Depth (VOD) using brightness temperature (Tb) data. The algorithm requires a surface roughness parameter which - despite implications - is generally assumed to be constant at global scale. Due to inherent noise in the satellite data and retrieval algorithm, the VOD retrievals are usually observed to be highly fluctuating at daily scale which may not occur in reality. Such noisy VOD retrievals along with spatially invariable roughness parameter may affect the quality of soil moisture retrievals. The current work aims to smoothen the VOD retrievals (with an assumption that VOD remains constant over a period of time) and simultaneously generate, for the first time, global surface roughness map using multiple descending X-band Tb observations of AMSR-E. The methodology utilizes Tb values under a moving-time-window-setup to estimate concurrently the soil moisture of each day and a constant VOD in the window. Prior to this step, surface roughness parameter is estimated using the complete time series of Tb record. Upon carrying out the necessary sensitivity analysis, the smoothened VOD along with soil moisture retrievals is generated for the 10-year duration of AMSR-E (2002-2011) with a 7-day moving window using the LPRM framework. The spatial patterns of resulted global VOD maps are in coherence with vegetation biomass and climate conditions. The VOD results also exhibit a smoothening effect in terms of lower values of standard deviation. This is also evident from time series comparison of VOD and LPRM VOD retrievals without optimization over moving windows at several grid locations across the globe. The global surface roughness map also exhibited spatial patterns that are strongly influenced by topography and land use conditions. Some of the noticeable features include high roughness over mountainous regions and heavily vegetated tropical rainforests, low roughness in desert areas and moderate roughness value over higher latitudes. The new datasets of VOD and surface roughness can help improving the quality of soil moisture retrievals. Also, the methodology proposed is generic by nature and can be implemented over currently operating AMSR2, SMOS, and SMAP soil moisture missions.

Mapping the seafloor geology offshore of Massachusetts

USGS Publications Warehouse

Barnhardt, Walter A.; Andrews, Brian D.

2006-01-01

Geologic and bathymetric maps help us understand the evolutionary history of the Massachusetts coast and the processes that have shaped it. The maps show the distribution of bottom types (for example, bedrock, gravel, sand, mud) and water depths over large areas of the seafloor. In turn, these two fundamental parameters largely determine the species of flora and fauna that inhabit a particular area. Knowledge of bottom types and water depths provides a framework for mapping benthic habitats and managing marine resources. The need for coastal–zone mapping to inform policy and management is widely recognized as critical for mitigating hazards, creating resource inventories, and tracking environmental changes (National Research Council, 2004; U.S. Commission on Ocean Policy, 2004).

Passive optical coherence elastography using a time-reversal approach (Conference Presentation)

NASA Astrophysics Data System (ADS)

Nguyen, Thu-Mai; Zorgani, Ali; Fink, Mathias; Catheline, Stefan; Boccara, A. Claude

2017-02-01

Background and motivation - Conventional Optical Coherence Elastography (OCE) methods consist in launching controlled shear waves in tissues, and measuring their propagation speed using an ultrafast imaging system. However, the use of external shear sources limits transfer to clinical practice, especially for ophthalmic applications. Here, we propose a totally passive OCE method for ocular tissues based on time-reversal of the natural vibrations. Methods - Experiments were first conducted on a tissue-mimicking phantom containing a stiff inclusion. Pulsatile motions were reproduced by stimulating the phantom surface with two piezoelectric actuators excited asynchronously at low frequencies (50-500 Hz). The resulting random displacements were tracked at 190 frames/sec using spectral-domain optical coherence tomography (SD-OCT), with a 10x5µm² resolution over a 3x2mm² field-of-view (lateral x depth). The shear wavefield was numerically refocused (i.e. time-reversed) at each pixel using noise-correlation algorithms. The focal spot size yields the shear wavelength. Results were validated by comparison with shear wave speed measurements obtained from conventional active OCE. In vivo tests were then conducted on anesthetized rats. Results - The stiff inclusion of the phantom was delineated on the wavelength map with a wavelength ratio between the inclusion and the background (1.6) consistent with the speed ratio (1.7). This validates the wavelength measurements. In vivo, natural shear waves were detected in the eye and wavelength maps of the anterior segment showed a clear elastic contrast between the cornea, the sclera and the iris. Conclusion - We validated the time-reversal approach for passive elastography using SD-OCT imaging at low frame-rate. This method could accelerate the clinical transfer of ocular elastography.

Planarity constrained multi-view depth map reconstruction for urban scenes

NASA Astrophysics Data System (ADS)

Hou, Yaolin; Peng, Jianwei; Hu, Zhihua; Tao, Pengjie; Shan, Jie

2018-05-01

Multi-view depth map reconstruction is regarded as a suitable approach for 3D generation of large-scale scenes due to its flexibility and scalability. However, there are challenges when this technique is applied to urban scenes where apparent man-made regular shapes may present. To address this need, this paper proposes a planarity constrained multi-view depth (PMVD) map reconstruction method. Starting with image segmentation and feature matching for each input image, the main procedure is iterative optimization under the constraints of planar geometry and smoothness. A set of candidate local planes are first generated by an extended PatchMatch method. The image matching costs are then computed and aggregated by an adaptive-manifold filter (AMF), whereby the smoothness constraint is applied to adjacent pixels through belief propagation. Finally, multiple criteria are used to eliminate image matching outliers. (Vertical) aerial images, oblique (aerial) images and ground images are used for qualitative and quantitative evaluations. The experiments demonstrated that the PMVD outperforms the popular multi-view depth map reconstruction with an accuracy two times better for the aerial datasets and achieves an outcome comparable to the state-of-the-art for ground images. As expected, PMVD is able to preserve the planarity for piecewise flat structures in urban scenes and restore the edges in depth discontinuous areas.

Automatic detection of artifacts in converted S3D video

NASA Astrophysics Data System (ADS)

Bokov, Alexander; Vatolin, Dmitriy; Zachesov, Anton; Belous, Alexander; Erofeev, Mikhail

2014-03-01

In this paper we present algorithms for automatically detecting issues specific to converted S3D content. When a depth-image-based rendering approach produces a stereoscopic image, the quality of the result depends on both the depth maps and the warping algorithms. The most common problem with converted S3D video is edge-sharpness mismatch. This artifact may appear owing to depth-map blurriness at semitransparent edges: after warping, the object boundary becomes sharper in one view and blurrier in the other, yielding binocular rivalry. To detect this problem we estimate the disparity map, extract boundaries with noticeable differences, and analyze edge-sharpness correspondence between views. We pay additional attention to cases involving a complex background and large occlusions. Another problem is detection of scenes that lack depth volume: we present algorithms for detecting at scenes and scenes with at foreground objects. To identify these problems we analyze the features of the RGB image as well as uniform areas in the depth map. Testing of our algorithms involved examining 10 Blu-ray 3D releases with converted S3D content, including Clash of the Titans, The Avengers, and The Chronicles of Narnia: The Voyage of the Dawn Treader. The algorithms we present enable improved automatic quality assessment during the production stage.

Sentinel lymph nodes and lymphatic vessels: noninvasive dual-modality in vivo mapping by using indocyanine green in rats--volumetric spectroscopic photoacoustic imaging and planar fluorescence imaging.

PubMed

Kim, Chulhong; Song, Kwang Hyun; Gao, Feng; Wang, Lihong V

2010-05-01

To noninvasively map sentinel lymph nodes (SLNs) and lymphatic vessels in rats in vivo by using dual-modality nonionizing imaging-volumetric spectroscopic photoacoustic imaging, which measures optical absorption, and planar fluorescence imaging, which measures fluorescent emission-of indocyanine green (ICG). Institutional animal care and use committee approval was obtained. Healthy Sprague-Dawley rats weighing 250-420 g (age range, 60-120 days) were imaged by using volumetric photoacoustic imaging (n = 5) and planar fluorescence imaging (n = 3) before and after injection of 1 mmol/L ICG. Student paired t tests based on a logarithmic scale were performed to evaluate the change in photoacoustic signal enhancement of SLNs and lymphatic vessels before and after ICG injection. The spatial resolutions of both imaging systems were compared at various imaging depths (2-8 mm) by layering additional biologic tissues on top of the rats in vivo. Spectroscopic photoacoustic imaging was applied to identify ICG-dyed SLNs. In all five rats examined with photoacoustic imaging, SLNs were clearly visible, with a mean signal enhancement of 5.9 arbitrary units (AU) + or - 1.8 (standard error of the mean) (P < .002) at 0.2 hour after injection, while lymphatic vessels were seen in four of the five rats, with a signal enhancement of 4.3 AU + or - 0.6 (P = .001). In all three rats examined with fluorescence imaging, SLNs and lymphatic vessels were seen. The average full width at half maximum (FWHM) of the SLNs in the photoacoustic images at three imaging depths (2, 6, and 8 mm) was 2.0 mm + or - 0.2 (standard deviation), comparable to the size of a dissected lymph node as measured with a caliper. However, the FWHM of the SLNs in fluorescence images widened from 8 to 22 mm as the imaging depth increased, owing to strong light scattering. SLNs were identified spectroscopically in photoacoustic images. These two modalities, when used together with ICG, have the potential to help map SLNs in axillary staging and to help evaluate tumor metastasis in patients with breast cancer.

GlobalSoilMap France: High-resolution spatial modelling the soils of France up to two meter depth.

PubMed

Mulder, V L; Lacoste, M; Richer-de-Forges, A C; Arrouays, D

2016-12-15

This work presents the first GlobalSoilMap (GSM) products for France. We developed an automatic procedure for mapping the primary soil properties (clay, silt, sand, coarse elements, pH, soil organic carbon (SOC), cation exchange capacity (CEC) and soil depth). The procedure employed a data-mining technique and a straightforward method for estimating the 90% confidence intervals (CIs). The most accurate models were obtained for pH, sand and silt. Next, CEC, clay and SOC were found reasonably accurate predicted. Coarse elements and soil depth were the least accurate of all models. Overall, all models were considered robust; important indicators for this were 1) the small difference in model diagnostics between the calibration and cross-validation set, 2) the unbiased mean predictions, 3) the smaller spatial structure of the prediction residuals in comparison to the observations and 4) the similar performance compared to other developed GlobalSoilMap products. Nevertheless, the confidence intervals (CIs) were rather wide for all soil properties. The median predictions became less reliable with increasing depth, as indicated by the increase of CIs with depth. In addition, model accuracy and the corresponding CIs varied depending on the soil variable of interest, soil depth and geographic location. These findings indicated that the CIs are as informative as the model diagnostics. In conclusion, the presented method resulted in reasonably accurate predictions for the majority of the soil properties. End users can employ the products for different purposes, as was demonstrated with some practical examples. The mapping routine is flexible for cloud-computing and provides ample opportunity to be further developed when desired by its users. This allows regional and international GSM partners with fewer resources to develop their own products or, otherwise, to improve the current routine and work together towards a robust high-resolution digital soil map of the world. Copyright © 2016 Elsevier B.V. All rights reserved.

Time-to-space mapping of a continuous light wave with picosecond time resolution based on an electrooptic beam deflection.

PubMed

Hisatake, S; Kobayashi, T

2006-12-25

We demonstrate a time-to-space mapping of an optical signal with a picosecond time resolution based on an electrooptic beam deflection. A time axis of the optical signal is mapped into a spatial replica by the deflection. We theoretically derive a minimum time resolution of the time-to-space mapping and confirm it experimentally on the basis of the pulse width of the optical pulses picked out from the deflected beam through a narrow slit which acts as a temporal window. We have achieved the minimum time resolution of 1.6+/-0.2 ps.

Real-time rendering for multiview autostereoscopic displays

NASA Astrophysics Data System (ADS)

Berretty, R.-P. M.; Peters, F. J.; Volleberg, G. T. G.

2006-02-01

In video systems, the introduction of 3D video might be the next revolution after the introduction of color. Nowadays multiview autostereoscopic displays are in development. Such displays offer various views at the same time and the image content observed by the viewer depends upon his position with respect to the screen. His left eye receives a signal that is different from what his right eye gets; this gives, provided the signals have been properly processed, the impression of depth. The various views produced on the display differ with respect to their associated camera positions. A possible video format that is suited for rendering from different camera positions is the usual 2D format enriched with a depth related channel, e.g. for each pixel in the video not only its color is given, but also e.g. its distance to a camera. In this paper we provide a theoretical framework for the parallactic transformations which relates captured and observed depths to screen and image disparities. Moreover we present an efficient real time rendering algorithm that uses forward mapping to reduce aliasing artefacts and that deals properly with occlusions. For improved perceived resolution, we take the relative position of the color subpixels and the optics of the lenticular screen into account. Sophisticated filtering techniques results in high quality images.

Dust Emission at 8 and 24 μm as Diagnostics of H II Region Radiative Transfer

NASA Astrophysics Data System (ADS)

Oey, M. S.; López-Hernández, J.; Kellar, J. A.; Pellegrini, E. W.; Gordon, K. D.; Jameson, K. E.; Li, A.; Madden, S. C.; Meixner, M.; Roman-Duval, J.; Bot, C.; Rubio, M.; Tielens, A. G. G. M.

2017-07-01

We use the Spitzer Surveying the Agents of Galaxy Evolution (SAGE) survey of the Magellanic Clouds to evaluate the relationship between the 8 μm polycyclic aromatic hydrocarbon (PAH) emission, 24 μm hot dust emission, and H II region radiative transfer. We confirm that in the higher-metallicity Large Magellanic Cloud, PAH destruction is sensitive to optically thin conditions in the nebular Lyman continuum: objects identified as optically thin candidates based on nebular ionization structure show six times lower median 8 μm surface brightness (0.18 mJy arcsec-2) than their optically thick counterparts (1.2 mJy arcsec-2). The 24 μm surface brightness also shows a factor of three offset between the two classes of objects (0.13 versus 0.44 mJy arcsec-2, respectively), which is driven by the association between the very small dust grains and higher density gas found at higher nebular optical depths. In contrast, PAH and dust formation in the low-metallicity Small Magellanic Cloud is strongly inhibited such that we find no variation in either 8 μm or 24 μm emission between our optically thick and thin samples. This is attributable to extremely low PAH and dust production together with high, corrosive UV photon fluxes in this low-metallicity environment. The dust mass surface densities and gas-to-dust ratios determined from dust maps using Herschel HERITAGE survey data support this interpretation.

INTEGRATING LIDAR AND SATELLITE OPTICAL DEPTH WITH AMBIENT MONITORING FOR 3-DIMENSIONAL PARTICULATE CHARACTERIZATION

EPA Science Inventory

A combination of in-situ PM2.5, sunphotometers, upward pointing lidar and satellite aerosol optical depth (AOD) instruments have been employed to better understand variability in the correlation between AOD and PM2.5 at the surface. Previous studies have shown good correlation be...

A Review of Depth and Normal Fusion Algorithms

PubMed Central

Štolc, Svorad; Pock, Thomas

2018-01-01

Geometric surface information such as depth maps and surface normals can be acquired by various methods such as stereo light fields, shape from shading and photometric stereo techniques. We compare several algorithms which deal with the combination of depth with surface normal information in order to reconstruct a refined depth map. The reasons for performance differences are examined from the perspective of alternative formulations of surface normals for depth reconstruction. We review and analyze methods in a systematic way. Based on our findings, we introduce a new generalized fusion method, which is formulated as a least squares problem and outperforms previous methods in the depth error domain by introducing a novel normal weighting that performs closer to the geodesic distance measure. Furthermore, a novel method is introduced based on Total Generalized Variation (TGV) which further outperforms previous approaches in terms of the geodesic normal distance error and maintains comparable quality in the depth error domain. PMID:29389903

Modeling optical and UV polarization of AGNs. IV. Polarization timing

NASA Astrophysics Data System (ADS)

Rojas Lobos, P. A.; Goosmann, R. W.; Marin, F.; Savić, D.

2018-03-01

Context. Optical observations cannot resolve the structure of active galactic nuclei (AGN), and a unified model for AGN was inferred mostly from indirect methods, such as spectroscopy and variability studies. Optical reverberation mapping allowed us to constrain the spatial dimension of the broad emission line region and thereby to measure the mass of supermassive black holes. Recently, reverberation was also applied to the polarized signal emerging from different AGN components. In principle, this should allow us to measure the spatial dimensions of the sub-parsec reprocessing media. Aim. We conduct numerical modeling of polarization reverberation and provide theoretical predictions for the polarization time lag induced by different AGN components. The model parameters are adjusted to the observational appearance of the Seyfert 1 galaxy NGC 4151. Methods: We modeled scattering-induced polarization and tested different geometries for the circumnuclear dust component. Our tests included the effects of clumpiness and different dust prescriptions. To further extend the model, we also explored the effects of additional ionized winds stretched along the polar direction, and of an equatorial scattering ring that is responsible for the polarization angle observed in pole-on AGN. The simulations were run using a time-dependent version of the STOKES code. Results: Our modeling confirms the previously found polarization characteristics as a function of the observer`s viewing angle. When the dust adopts a flared-disk geometry, the lags reveal a clear difference between type 1 and type 2 AGN. This distinction is less clear for a torus geometry where the time lag is more sensitive to the geometry and optical depth of the inner surface layers of the funnel. The presence of a scattering equatorial ring and ionized outflows increased the recorded polarization time lags, and the polar outflows smooths out dependence on viewing angle, especially for the higher optical depth of the wind (τ = 0.3). Conclusions: Together with other AGN observables, the polarization time lag places new, independent "seismological" constraints on the inner geometry of AGN. If we conduct time-dependent spectropolarimetric observing campaigns of AGN, this method has a high potential for a census of supermassive black holes.

2010-2011 Performance of the AirNow Satellite Data Processor

NASA Astrophysics Data System (ADS)

Pasch, A. N.; DeWinter, J. L.; Haderman, M. D.; van Donkelaar, A.; Martin, R. V.; Szykman, J.; White, J. E.; Dickerson, P.; Zahn, P. H.; Dye, T. S.

2012-12-01

The U.S. Environmental Protection Agency's (EPA) AirNow program provides maps of real time hourly Air Quality Index (AQI) conditions and daily AQI forecasts nationwide (http://www.airnow.gov). The public uses these maps to make health-based decisions. The usefulness of the AirNow air quality maps depends on the accuracy and spatial coverage of air quality measurements. Currently, the maps use only ground-based measurements, which have significant gaps in coverage in some parts of the United States. As a result, contoured AQI levels have high uncertainty in regions far from monitors. To improve the usefulness of air quality maps, scientists at EPA, Dalhousie University, and Sonoma Technology, Inc. have been working in collaboration with the National Aeronautics and Space Administration (NASA) and the National Oceanic and Atmospheric Administration (NOAA) to incorporate satellite-estimated surface PM2.5 concentrations into the maps via the AirNow Satellite Data Processor (ASDP). These satellite estimates are derived using NASA/NOAA satellite aerosol optical depth (AOD) retrievals and GEOS-Chem modeled ratios of surface PM2.5 concentrations to AOD. GEOS-Chem is a three-dimensional chemical transport model for atmospheric composition driven by meteorological input from the Goddard Earth Observing System (GOES). The ASDP can fuse multiple PM2.5 concentration data sets to generate AQI maps with improved spatial coverage. The goal of ASDP is to provide more detailed AQI information in monitor-sparse locations and augment monitor-dense locations with more information. We will present a statistical analysis for 2010-2011 of the ASDP predictions of PM2.5 focusing on performance at validation sites. In addition, we will present several case studies evaluating the ASDP's performance for multiple regions and seasons, focusing specifically on days when large spatial gradients in AQI and wildfire smoke impact were observed.

Lithologic boundaries from gravity and magnetic anomalies over Proterozoic Dalma volcanics

NASA Astrophysics Data System (ADS)

Yadav, Pramod Kumar; Adhikari, P. K.; Srivastava, Shalivahan; Maurya, Ved P.; Tripathi, Anurag; Singh, Shailendra; Singh, Roshan K.; Bage, Ashish K.

2018-03-01

Dalma volcanics (DVs) has intruded the older Singhbhum Group of Metapelites. Despite DVs being rich in mineralisation, its boundaries are not clearly demarcated. Gravity and magnetic surveys have been attempted for mapping the boundaries in DVs. These surveys were made in the northern fringe of the DVs over an area of ˜ 0.70 km2 along 13 parallel lines at 50 m spacing. The data was acquired at ˜ 25 m spacing. The surveys were taken for determination of lithological boundaries, depths and nature of causative source using Euler depth solutions and radially averaged power spectrum (RAPS). Residual anomaly maps of gravity and magnetic intensity show the same trend as that of Bouguer gravity anomaly and total magnetic intensity anomaly map indicating towards shallow sources. The magnetic map in general follows the same pattern as that of gravity anomaly maps. The map shows coincident high gravity and magnetic anomalies. These anomalies together with resistivity signatures confirm that the northern fringe of DVs hosts volcanogenic massive sulphide settings. The Euler depth solution delineated the lateral boundaries and nature of the source. It seems that the source is of spherical nature lying within a depth range of 25-40 m. The obtained lithological (vertical) units from RAPS are between Lower DVs, Upper DVs and Singhbhum Group Metapelites at depths of ˜ 15, ˜ 25 and ˜ 40 m, respectively. The metallogeny is associated with the Upper DVs and the corresponding delineated lithological (vertical) unit is indicative of the top of the ore body. Good agreement is observed with the geological succession from the drilling data and resistivity data. The findings suggest that the northern fringe of DVs could be a preferred target for drilling.

Miniature microwave applicator for murine bladder hyperthermia studies.

PubMed

Salahi, Sara; Maccarini, Paolo F; Rodrigues, Dario B; Etienne, Wiguins; Landon, Chelsea D; Inman, Brant A; Dewhirst, Mark W; Stauffer, Paul R

2012-01-01

Novel combinations of heat with chemotherapeutic agents are often studied in murine tumour models. Currently, no device exists to selectively heat small tumours at depth in mice. In this project we modelled, built and tested a miniature microwave heat applicator, the physical dimensions of which can be scaled to adjust the volume and depth of heating to focus on the tumour volume. Of particular interest is a device that can selectively heat murine bladder. Using Avizo(®) segmentation software, we created a numerical mouse model based on micro-MRI scan data. The model was imported into HFSS™ (Ansys) simulation software and parametric studies were performed to optimise the dimensions of a water-loaded circular waveguide for selective power deposition inside a 0.15 mL bladder. A working prototype was constructed operating at 2.45 GHz. Heating performance was characterised by mapping fibre-optic temperature sensors along catheters inserted at depths of 0-1 mm (subcutaneous), 2-3 mm (vaginal), and 4-5 mm (rectal) below the abdominal wall, with the mid depth catheter adjacent to the bladder. Core temperature was monitored orally. Thermal measurements confirm the simulations which demonstrate that this applicator can provide local heating at depth in small animals. Measured temperatures in murine pelvis show well-localised bladder heating to 42-43°C while maintaining normothermic skin and core temperatures. Simulation techniques facilitate the design optimisation of microwave antennas for use in pre-clinical applications such as localised tumour heating in small animals. Laboratory measurements demonstrate the effectiveness of a new miniature water-coupled microwave applicator for localised heating of murine bladder.

Controlled core removal from a D-shaped optical fiber.

PubMed

Markos, Douglas J; Ipson, Benjamin L; Smith, Kevin H; Schultz, Stephen M; Selfridge, Richard H; Monte, Thomas D; Dyott, Richard B; Miller, Gregory

2003-12-20

The partial removal of a section of the core from a continuous D-shaped optical fiber is presented. In the core removal process, selective chemical etching is used with hydrofluoric (HF) acid. A 25% HF acid solution removes the cladding material above the core, and a 5% HF acid solution removes the core. A red laser with a wavelength of 670 nm is transmitted through the optical fiber during the etching. The power transmitted through the optical fiber is correlated to the etch depth by scanning electron microscope imaging. The developed process provides a repeatable method to produce an optical fiber with a specific etch depth.

Large depth of focus dynamic micro integral imaging for optical see-through augmented reality display using a focus-tunable lens.

PubMed

Shen, Xin; Javidi, Bahram

2018-03-01

We have developed a three-dimensional (3D) dynamic integral-imaging (InIm)-system-based optical see-through augmented reality display with enhanced depth range of a 3D augmented image. A focus-tunable lens is adopted in the 3D display unit to relay the elemental images with various positions to the micro lens array. Based on resolution priority integral imaging, multiple lenslet image planes are generated to enhance the depth range of the 3D image. The depth range is further increased by utilizing both the real and virtual 3D imaging fields. The 3D reconstructed image and the real-world scene are overlaid using an optical see-through display for augmented reality. The proposed system can significantly enhance the depth range of a 3D reconstructed image with high image quality in the micro InIm unit. This approach provides enhanced functionality for augmented information and adjusts the vergence-accommodation conflict of a traditional augmented reality display.

Depth-resolved ballistic imaging in a low-depth-of-field optical Kerr gated imaging system

NASA Astrophysics Data System (ADS)

Zheng, Yipeng; Tan, Wenjiang; Si, Jinhai; Ren, YuHu; Xu, Shichao; Tong, Junyi; Hou, Xun

2016-09-01

We demonstrate depth-resolved imaging in a ballistic imaging system, in which a heterodyned femtosecond optical Kerr gate is introduced to extract useful imaging photons for detecting an object hidden in turbid media and a compound lens is proposed to ensure both the depth-resolved imaging capability and the long working distance. Two objects of about 15-μm widths hidden in a polystyrene-sphere suspension have been successfully imaged with approximately 600-μm depth resolution. Modulation-transfer-function curves with the object in and away from the object plane have also been measured to confirm the depth-resolved imaging capability of the low-depth-of-field (low-DOF) ballistic imaging system. This imaging approach shows potential for application in research of the internal structure of highly scattering fuel spray.

Depth-resolved ballistic imaging in a low-depth-of-field optical Kerr gated imaging system

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zheng, Yipeng; Tan, Wenjiang, E-mail: tanwenjiang@mail.xjtu.edu.cn; Si, Jinhai

2016-09-07

We demonstrate depth-resolved imaging in a ballistic imaging system, in which a heterodyned femtosecond optical Kerr gate is introduced to extract useful imaging photons for detecting an object hidden in turbid media and a compound lens is proposed to ensure both the depth-resolved imaging capability and the long working distance. Two objects of about 15-μm widths hidden in a polystyrene-sphere suspension have been successfully imaged with approximately 600-μm depth resolution. Modulation-transfer-function curves with the object in and away from the object plane have also been measured to confirm the depth-resolved imaging capability of the low-depth-of-field (low-DOF) ballistic imaging system. Thismore » imaging approach shows potential for application in research of the internal structure of highly scattering fuel spray.« less

Expading fluvial remote sensing to the riverscape: Mapping depth and grain size on the Merced River, California

NASA Astrophysics Data System (ADS)

Richardson, Ryan T.

This study builds upon recent research in the field of fluvial remote sensing by applying techniques for mapping physical attributes of rivers. Depth, velocity, and grain size are primary controls on the types of habitat present in fluvial ecosystems. This thesis focuses on expanding fluvial remote sensing to larger spatial extents and sub-meter resolutions, which will increase our ability to capture the spatial heterogeneity of habitat at a resolution relevant to individual salmonids and an extent relevant to species. This thesis consists of two chapters, one focusing on expanding the spatial extent over which depth can be mapped using Optimal Band Ratio Analysis (OBRA) and the other developing general relations for mapping grain size from three-dimensional topographic point clouds. The two chapters are independent but connected by the overarching goal of providing scientists and managers more useful tools for quantifying the amount and quality of salmonid habitat via remote sensing. The OBRA chapter highlights the true power of remote sensing to map depths from hyperspectral images as a central component of watershed scale analysis, while also acknowledging the great challenges involved with increasing spatial extent. The grain size mapping chapter establishes the first general relations for mapping grain size from roughness using point clouds. These relations will significantly reduce the time needed in the field by eliminating the need for independent measurements of grain size for calibrating the roughness-grain size relationship and thus making grain size mapping with SFM more cost effective for river restoration and monitoring. More data from future studies are needed to refine these relations and establish their validity and generality. In conclusion, this study adds to the rapidly growing field of fluvial remote sensing and could facilitate river research and restoration.