Science.gov

Sample records for order independent similarity

  1. Conceptual Similarity Promotes Generalization of Higher Order Fear Learning

    ERIC Educational Resources Information Center

    Dunsmoor, Joseph E.; White, Allison J.; LaBar, Kevin S.

    2011-01-01

    We tested the hypothesis that conceptual similarity promotes generalization of conditioned fear. Using a sensory preconditioning procedure, three groups of subjects learned an association between two cues that were conceptually similar, unrelated, or mismatched. Next, one of the cues was paired with a shock. The other cue was then reintroduced to…

  2. The foldon universe: a survey of structural similarity and self-recognition of independently folding units.

    PubMed

    Panchenko, A R; Luthey-Schulten, Z; Cole, R; Wolynes, P G

    1997-09-12

    We have identified independently folding units, so called "foldons", from non-homologous proteins representing different folds. We applied simple statistical arguments in order to estimate the size of the foldon universe required to construct all foldable proteins. Various alignment procedures yield about 2600 foldons in the natural protein universe but this estimate is shown to be rather sensitive to the chosen cut-off value for structural similarity. We showed that foldon matching-modelling can reproduce the major part of the main chain of several proteins with a structural similarity measure Q-score of about 0.4 and an r.m.s. error of about 5 A, although the accuracy of structure prediction has been limited so far by the small size of foldon data set. The prediction score may be increased if one uses the set of protein fragments with optimized sequence-structure relationships, in other works, minimally frustrated segments. To quantify the degree of frustration of the structures of foldons from our database, we searched for those foldons which recognize their own sequence and structure upon threading. As a result we found that about half of the foldons from our data set recognize themselves as the best choice upon threading and therefore are individually minimally frustrated. We showed that there is a close connection between the Q-score of self recognition and the relative foldability (Theta) of the folding units. Foldons having high Q-score and Theta values are expected to be formed in the early phase of the folding process and be observed as stable intermediates under appropriate experimental conditions.

  3. Similarity

    NASA Technical Reports Server (NTRS)

    Apostol, Tom M. (Editor)

    1990-01-01

    In this 'Project Mathematics! series, sponsored by the California Institute for Technology (CalTech), the mathematical concept of similarity is presented. he history of and real life applications are discussed using actual film footage and computer animation. Terms used and various concepts of size, shape, ratio, area, and volume are demonstrated. The similarity of polygons, solids, congruent triangles, internal ratios, perimeters, and line segments using the previous mentioned concepts are shown.

  4. Similar phenomena, different mechanisms: semantic and phonological false memories are produced by independent mechanisms.

    PubMed

    Ballou, McKenzie R; Sommers, Mitchell S

    2008-12-01

    The Deese/Roediger-McDermott paradigm can produce high levels of false remembering for lists of both semantic and phonological associates. The present study investigated whether similar mechanisms mediate false memories with these two types of lists. Experiment 1 measured the relationship between levels of false memory obtained with lists of semantic and phonological associates. The results indicated little correlation between false memories generated with the two types of associates. Experiment 2 used a between-subjects design to determine whether the absence of a significant correlation in Experiment 1 was a consequence of the relatively low levels of false memory observed in that experiment. The results indicated similar proportions of false memories in Experiments 1 and 2, suggesting that the within-subjects design in Experiment 1 did not reduce the overall levels of false recall or recognition. The results are discussed in terms of their implications for the independence of the mechanisms mediating different types of false memories.

  5. Similarity, independence, or interaction for binary mixture effects of nerve toxicants for the nematode Caenorhabditis elegans.

    PubMed

    Svendsen, Claus; Siang, Pia; Lister, Lindsay J; Rice, Annabel; Spurgeon, David J

    2010-05-01

    Intensive agriculture can require the simultaneous use of more than one pesticide, resulting in the presence of mixtures in soils and waters. To assess mixture effects, concentration addition (CA) for similar acting chemicals and independent action (IA) for dissimilar acting chemicals are the most frequently used models. While the mechanistic basis for the selection of CA and IA for a given mixture appears appealing (similar vs dissimilar action), it has not yet been established how similar chemicals need to be in their effect before CA should be viewed as the most appropriate model. Here this is investigated in studies of the toxicity of binary mixtures of five different pesticides from three classes that have the same putative mode of action (neuroexcitation) but different molecular mechanisms in binary mixture tests with the nematode Caenorhabditis elegans. Effects of exposure on nematode survival were limited at the concentrations tested. Data analysis, therefore, focused on reproductive toxicity. Both CA and IA were found to be valid models for prediction of the toxicity of the 10 mixtures, although for seven CA provided a mathematically better fit. Both models could describe the toxicity for four mixtures; however, evidence for interaction was found in the remaining six cases. Where interactions occurred, these could be explained by information on the potential mechanisms of compound toxicokinetics-particularly when mixtures comprised a metabolically activated and a metabolically deactivated chemical and/or cases where the relative potencies of the two tested chemicals differed greatly. It is concluded, therefore, that detailed analysis of toxicokinetics and toxicodynamics can aid further understanding of interactions in mixtures.

  6. 3 CFR 13579 - Executive Order 13579 of July 11, 2011. Regulation and Independent Regulatory Agencies

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 3 The President 1 2012-01-01 2012-01-01 false Executive Order 13579 of July 11, 2011. Regulation and Independent Regulatory Agencies 13579 Order 13579 Presidential Documents Executive Orders Executive Order 13579 of July 11, 2011 EO 13579 Regulation and Independent Regulatory Agencies By...

  7. Cation Ordering in [(Tl,M)O] Layers of ``1201''-Based Cuprates: Similarity to Ordering in fcc-Based Alloys

    NASA Astrophysics Data System (ADS)

    Van Tendeloo, G.; De Meulenaere, P.; Letouzé, F.; Martin, C.; Hervieu, M.; Raveau, B.

    1997-08-01

    "1201" Tl-based substituted cuprates of the type (Tl1-xMx)Sr2CuO5have been synthesized forM=Nb, Ta, or W. These materials do not superconduct due to a statistical distribution of some of theMfor Cu. The remarkable feature of these materials is the ordering observed between Tl andMin the (Tl1-xMx-ε)O plane. The type of ordering depends on the composition and shows remarkable similarities with the ordering in Ni-Mo or other so-called 1 1/2 0 type fcc-based alloys or with the ordering in rocksalt oxides TiOx. The short-range order, forM=W, can be readily interpreted in terms of a mixing of nano-clusters with two different compositions. These observations of two-dimensional ordering confirm recent ideas about ordering in three-dimensional fcc-based alloys.

  8. Zeroing In on Mindfulness Facets: Similarities, Validity, and Dimensionality across Three Independent Measures.

    PubMed

    Siegling, Alex B; Petrides, K V

    2016-01-01

    The field of mindfulness has seen a proliferation of psychometric measures, characterised by differences in operationalisation and conceptualisation. To illuminate the scope of, and offer insights into, the diversity apparent in the burgeoning literature, two distinct samples were used to examine the similarities, validity, and dimensionality of mindfulness facets and subscales across three independent measures: the Five Facet Mindfulness Questionnaire (FFMQ), Philadelphia Mindfulness Scale (PHLMS), and Toronto Mindfulness Scale (TMS). Results revealed problematic associations of FFMQ Observe with the other FFMQ facets and supported a four-factor structure (omitting this facet), while disputing the originally envisaged five-factor model; thus, solidifying a pattern in the literature. Results also confirmed the bidimensional nature of the PHLMS and TMS subscales, respectively. A joint Confirmatory Factor Analysis showed that PHLMS Acceptance could be assimilated within the FFMQ's four-factor model (as a distinct factor). The study offers a way of understanding interrelationships between the available mindfulness scales, so as to help practitioners and researchers make a more informed choice when conceptualising and operationalising mindfulness.

  9. Mathematical evaluation of similarity factor using various weighing approaches on aceclofenac marketed formulations by model-independent method.

    PubMed

    Soni, T G; Desai, J U; Nagda, C D; Gandhi, T R; Chotai, N P

    2008-01-01

    The US Food and Drug Administration's (FDA's) guidance for industry on dissolution testing of immediate-release solid oral dosage forms describes that drug dissolution may be the rate limiting step for drug absorption in the case of low solubility/high permeability drugs (BCS class II drugs). US FDA Guidance describes the model-independent mathematical approach proposed by Moore and Flanner for calculating a similarity factor (f2) of dissolution across a suitable time interval. In the present study, the similarity factor was calculated on dissolution data of two marketed aceclofenac tablets (a BCS class II drug) using various weighing approaches proposed by Gohel et al. The proposed approaches were compared with a conventional approach (W = 1). On the basis of consideration of variability, preference is given in the order of approach 3 > approach 2 > approach 1 as approach 3 considers batch-to-batch as well as within-samples variability and shows best similarity profile. Approach 2 considers batch-to batch variability with higher specificity than approach 1.

  10. Assessing the differences and similarities between hospital chains and independents regarding revenues, profits, and community contributions.

    PubMed

    McDermott, Dennis R

    2009-01-01

    Hospital systems or chains continue to grow their market share relative to independent hospitals. This trend generates concerns among health care industry observers as historical performance suggests chains charge more for health care services than the independents while providing reduced contributions to their community. This study empirically assesses key performance measures of 67 acute-care hospitals in Virginia by testing if there are differences between chains and independents regarding total patient revenues, revenues per admission, profitability and community support, including charity care, bad debt, taxes paid and Medicaid participation. Implications to industry policy-makers as well as to hospital executives and marketing managers are then presented.

  11. Similar negative impacts of temperature on global wheat yield estimated by three independent methods

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The potential impact of global temperature change on global wheat production has recently been assessed with different methods, scaling and aggregation approaches. Here we show that grid-based simulations, point-based simulations, and statistical regressions produce similar estimates of temperature ...

  12. A negative semantic similarity effect on short-term order memory: evidence from recency judgements.

    PubMed

    Tse, Chi-Shing

    2010-08-01

    Speeded recency judgements were used to examine whether judgements concerning the relative temporal order in which two items were presented on a short eight-item, study list would be facilitated or hindered when the two items were from the same semantic category (related, R, items), relative to when they were from different categories (unrelated, U, items). Semantic similarity led to slower and less accurate recency judgements. To evaluate the extent that item memory contributes to recency judgement performance, I used speeded pair recognition and speeded two-alternative forced-choice (2AFC) recognition trials, in which the stimuli and designs were the same as in the recency judgement test. The type of test trial was manipulated between subjects (recency judgement vs pair recognition) or within participants (recency judgement and 2AFC recognition). Regardless of the between- or within-participants manipulation of recognition vs order memory tests, the pattern of recognition performance was very different from the pattern of recency judgement performance, indicating that semantic similarity had a negative effect on order memory per se. The explanation of the current findings offered by position-based order memory theories is discussed.

  13. The development of the Poincare-similar elements with true anomaly as the independent variable

    NASA Technical Reports Server (NTRS)

    Mueller, A.

    1976-01-01

    In reference 1, the Hamiltonian of the unperturbed two-body problem in extended phase space is established. Depending on the type of time transformation, eight canonical elements were developed with the true anomaly or the eccentric anomaly as the independent variable. These two new sets, DS(phi) and DS(u), however contain singularities for small eccentricities and inclinations. In reference 2, these singularities are removed by a transformation from DS(u) to eight canonical PS(u) elements. In reference 3, the DS(phi) variables are transformed to the PS(phi) elements to remove the singularities. However, no direct relation was established between the eight canonical PS(phi) elements and the Cartesian coordinates. It is the purpose of this report to establish those relations and to develop the perturbed equations of motion in the PS(phi) space. This report also demonstrates the accuracy of this new set when it is applied to numerical orbit prediction problems.

  14. Similar Estimates of Temperature Impacts on Global Wheat Yield by Three Independent Methods

    NASA Technical Reports Server (NTRS)

    Liu, Bing; Asseng, Senthold; Muller, Christoph; Ewart, Frank; Elliott, Joshua; Lobell, David B.; Martre, Pierre; Ruane, Alex C.; Wallach, Daniel; Jones, James W.; Rosenzweig, Cynthia; Deryng, Delphine

    2016-01-01

    The potential impact of global temperature change on global crop yield has recently been assessed with different methods. Here we show that grid-based and point-based simulations and statistical regressions (from historic records), without deliberate adaptation or CO2 fertilization effects, produce similar estimates of temperature impact on wheat yields at global and national scales. With a 1 C global temperature increase, global wheat yield is projected to decline between 4.1% and 6.4%. Projected relative temperature impacts from different methods were similar for major wheat-producing countries China, India, USA and France, but less so for Russia. Point-based and grid-based simulations, and to some extent the statistical regressions, were consistent in projecting that warmer regions are likely to suffer more yield loss with increasing temperature than cooler regions. By forming a multi-method ensemble, it was possible to quantify 'method uncertainty' in addition to model uncertainty. This significantly improves confidence in estimates of climate impacts on global food security.

  15. Similar estimates of temperature impacts on global wheat yield by three independent methods

    NASA Astrophysics Data System (ADS)

    Liu, Bing; Asseng, Senthold; Müller, Christoph; Ewert, Frank; Elliott, Joshua; Lobell, David B.; Martre, Pierre; Ruane, Alex C.; Wallach, Daniel; Jones, James W.; Rosenzweig, Cynthia; Aggarwal, Pramod K.; Alderman, Phillip D.; Anothai, Jakarat; Basso, Bruno; Biernath, Christian; Cammarano, Davide; Challinor, Andy; Deryng, Delphine; Sanctis, Giacomo De; Doltra, Jordi; Fereres, Elias; Folberth, Christian; Garcia-Vila, Margarita; Gayler, Sebastian; Hoogenboom, Gerrit; Hunt, Leslie A.; Izaurralde, Roberto C.; Jabloun, Mohamed; Jones, Curtis D.; Kersebaum, Kurt C.; Kimball, Bruce A.; Koehler, Ann-Kristin; Kumar, Soora Naresh; Nendel, Claas; O'Leary, Garry J.; Olesen, Jørgen E.; Ottman, Michael J.; Palosuo, Taru; Prasad, P. V. Vara; Priesack, Eckart; Pugh, Thomas A. M.; Reynolds, Matthew; Rezaei, Ehsan E.; Rötter, Reimund P.; Schmid, Erwin; Semenov, Mikhail A.; Shcherbak, Iurii; Stehfest, Elke; Stöckle, Claudio O.; Stratonovitch, Pierre; Streck, Thilo; Supit, Iwan; Tao, Fulu; Thorburn, Peter; Waha, Katharina; Wall, Gerard W.; Wang, Enli; White, Jeffrey W.; Wolf, Joost; Zhao, Zhigan; Zhu, Yan

    2016-12-01

    The potential impact of global temperature change on global crop yield has recently been assessed with different methods. Here we show that grid-based and point-based simulations and statistical regressions (from historic records), without deliberate adaptation or CO2 fertilization effects, produce similar estimates of temperature impact on wheat yields at global and national scales. With a 1 °C global temperature increase, global wheat yield is projected to decline between 4.1% and 6.4%. Projected relative temperature impacts from different methods were similar for major wheat-producing countries China, India, USA and France, but less so for Russia. Point-based and grid-based simulations, and to some extent the statistical regressions, were consistent in projecting that warmer regions are likely to suffer more yield loss with increasing temperature than cooler regions. By forming a multi-method ensemble, it was possible to quantify `method uncertainty’ in addition to model uncertainty. This significantly improves confidence in estimates of climate impacts on global food security.

  16. Technique of Order Preference by Similarity for Multiple Attribute Decision Making Based on Grey Members

    NASA Astrophysics Data System (ADS)

    Xu, Jiuping; Sasaki, Masato

    The aim of this paper is to extend the technique of order preference by similarity to ideal and anti-ideal alternative to the Grey system. In general, multi-attribute problems in real-life situation have uncertain and imprecise data while Grey system theory is to deal with a linguistic decision process to solve the decision-making problems under uncertainty environment. In this paper, the rating of each alternative and the weight of each criterion are described by linguistic terms that can be expressed in Grey numbers. Further, vertex method is proposed to calculate the distance between Grey numbers. According to the concept of the technique of order preference by similarity to ideal and anti-ideal alternative, a closeness coefficient is defined to determine the ranking order of all alternatives by calculating the distances to both the Grey ideal solution (GIS) and Grey anti-ideal solution (GAIS) simultaneously. Finally, an example is shown to highlight the procedure of the proposed method.

  17. IP-MSA: Independent order of progressive multiple sequence alignments using different substitution matrices

    NASA Astrophysics Data System (ADS)

    Boraik, Aziz Nasser; Abdullah, Rosni; Venkat, Ibrahim

    2014-12-01

    Multiple sequence alignment (MSA) is an essential process for many biological sequence analyses. There are many algorithms developed to solve MSA, but an efficient computation method with very high accuracy is still a challenge. Progressive alignment is the most widely used approach to compute the final MSA. In this paper, we present a simple and effective progressive approach. Based on the independent order of sequences progressive alignment which proposed in QOMA, this method has been modified to align the whole sequences to maximize the score of MSA. Moreover, in order to further improve the accuracy of the method, we estimate the similarity of any pair of input sequences by using their percent identity, and based on this measure, we choose different substitution matrices during the progressive alignment. In addition, we have included horizontal information to alignment by adjusting the weights of amino acid residues based on their neighboring residues. The experimental results have been tested on popular benchmark of global protein sequences BAliBASE 3.0 and local protein sequences IRMBASE 2.0. The results of the proposed approach outperform the original method in QOMA in terms of sum-of-pair score and column score by up to 14% and 7% respectively.

  18. Similar Representations of Sequence Knowledge in Young and Older Adults: A Study of Effector Independent Transfer

    PubMed Central

    Barnhoorn, Jonathan S.; Döhring, Falko R.; Van Asseldonk, Edwin H. F.; Verwey, Willem B.

    2016-01-01

    Older adults show reduced motor performance and changes in motor skill development. To better understand these changes, we studied differences in sequence knowledge representations between young and older adults using a transfer task. Transfer, or the ability to apply motor skills flexibly, is highly relevant in day-to-day motor activity and facilitates generalization of learning to new contexts. By using movement types that are completely unrelated in terms of muscle activation and response location, we focused on transfer facilitated by the early, visuospatial system. We tested 32 right-handed older adults (65–75) and 32 young adults (18–30). During practice of a discrete sequence production task, participants learned two six-element sequences using either unimanual key-presses (KPs) or by moving a lever with lower arm flexion-extension (FE) movements. Each sequence was performed 144 times. They then performed a test phase consisting of familiar and random sequences performed with the type of movements not used during practice. Both age groups displayed transfer from FE to KP movements as indicated by faster performance on the familiar sequences in the test phase. Only young adults transferred their sequence knowledge from KP to FE movements. In both directions, the young showed higher transfer than older adults. These results suggest that the older participants, like the young, represented their sequences in an abstract visuospatial manner. Transfer was asymmetric in both age groups: there was more transfer from FE to KP movements than vice versa. This similar asymmetry is a further indication that the types of representations that older adults develop are comparable to those that young adults develop. We furthermore found that older adults improved less during FE practice, gained less explicit knowledge, displayed a smaller visuospatial working memory capacity and had lower processing speed than young adults. Despite the many differences between young and

  19. Query-by-Sketch Image Retrieval Using Similarity in Stroke Order

    NASA Astrophysics Data System (ADS)

    Hisamori, Takashi; Arikawa, Toru; Ohashi, Gosuke

    In previous studies, the retrieval accuracy of large image databases has been improved as a result of reducing the semantic gap by combining the input sketch with relevance feedback. A further improvement of retrieval accuracy is expected by combining each stroke, and its order, of the input sketch with the relevance feedback. However, this leaves as a problem the fact that the effect of the relevance feedback substantially depends on the stroke order in the input sketch. Although it is theoretically possible to consider all the possible stroke orders, that would cause a realistic problem of creating an enormous amount of data. Consequently, the technique introduced in this paper intends to improve retrieval efficiency by effectively using the relevance feedback by means of conducting data mining of the sketch considering the similarity in the order of strokes. To ascertain the effectiveness of this technique, a retrieval experiment was conducted using 20, 000 images of a collection, the Corel Photo Gallery, and the experiment was able to confirm an improvement in the retrieval efficiency.

  20. Modality independence of order coding in working memory: Evidence from cross-modal order interference at recall.

    PubMed

    Vandierendonck, André

    2016-01-01

    Working memory researchers do not agree on whether order in serial recall is encoded by dedicated modality-specific systems or by a more general modality-independent system. Although previous research supports the existence of autonomous modality-specific systems, it has been shown that serial recognition memory is prone to cross-modal order interference by concurrent tasks. The present study used a serial recall task, which was performed in a single-task condition and in a dual-task condition with an embedded memory task in the retention interval. The modality of the serial task was either verbal or visuospatial, and the embedded tasks were in the other modality and required either serial or item recall. Care was taken to avoid modality overlaps during presentation and recall. In Experiment 1, visuospatial but not verbal serial recall was more impaired when the embedded task was an order than when it was an item task. Using a more difficult verbal serial recall task, verbal serial recall was also more impaired by another order recall task in Experiment 2. These findings are consistent with the hypothesis of modality-independent order coding. The implications for views on short-term recall and the multicomponent view of working memory are discussed.

  1. Second-order temporal interference of two independent light beams at an asymmetrical beam splitter

    NASA Astrophysics Data System (ADS)

    Liu, Jianbin; Wang, Jingjing; Xu, Zhuo

    2017-01-01

    The second-order temporal interference of classical and nonclassical light at an asymmetrical beam splitter is discussed based on two-photon interference in Feynman's path integral theory. The visibility of the second-order interference pattern is determined by the properties of the superposed light beams, the ratio between the intensities of these two light beams, and the reflectivity of the asymmetrical beam splitter. Some requirements about the asymmetrical beam splitter have to be satisfied in order to ensure that the visibility of the second-order interference pattern of nonclassical light beams exceeds classical limit. The visibility of the second-order interference pattern of photons emitted by two independent single-photon sources is independent of the ratio between the intensities. These conclusions are important for the researches and applications in quantum optics and quantum information when asymmetrical beam splitter is employed.

  2. Distinctive Order Based Self-Similarity descriptor for multi-sensor remote sensing image matching

    NASA Astrophysics Data System (ADS)

    Sedaghat, Amin; Ebadi, Hamid

    2015-10-01

    Robust, well-distributed and accurate feature matching in multi-sensor remote sensing image is a difficult task duo to significant geometric and illumination differences. In this paper, a robust and effective image matching approach is presented for multi-sensor remote sensing images. The proposed approach consists of three main steps. In the first step, UR-SIFT (Uniform robust scale invariant feature transform) algorithm is applied for uniform and dense local feature extraction. In the second step, a novel descriptor namely Distinctive Order Based Self Similarity descriptor, DOBSS descriptor, is computed for each extracted feature. Finally, a cross matching process followed by a consistency check in the projective transformation model is performed for feature correspondence and mismatch elimination. The proposed method was successfully applied for matching various multi-sensor satellite images as: ETM+, SPOT 4, SPOT 5, ASTER, IRS, SPOT 6, QuickBird, GeoEye and Worldview sensors, and the results demonstrate its robustness and capability compared to common image matching techniques such as SIFT, PIIFD, GLOH, LIOP and LSS.

  3. Mesh independent convergence of the modified inexact Newton method for a second order nonlinear problem

    SciTech Connect

    Kim, T; Pasciak, J E; Vassilevski, P S

    2004-09-20

    In this paper, we consider an inexact Newton method applied to a second order nonlinear problem with higher order nonlinearities. We provide conditions under which the method has a mesh-independent rate of convergence. To do this, we are required to first, set up the problem on a scale of Hilbert spaces and second, to devise a special iterative technique which converges in a higher than first order Sobolev norm. We show that the linear (Jacobian) system solved in Newton's method can be replaced with one iterative step provided that the initial nonlinear iterate is accurate enough. The closeness criteria can be taken independent of the mesh size. Finally, the results of numerical experiments are given to support the theory.

  4. Birth order and sexual orientation in men: evidence for two independent interactions.

    PubMed

    Bogaert, Anthony F; Liu, Jian

    2006-11-01

    Birth order is correlated with male sexual orientation, but the reason(s) for this relationship is unclear. In the present study, data from a Canadian sample of homosexual and heterosexual men (N=604) were used to present evidence of two independent birth order interactions--one with height and the other with parental age--predicting sexual orientation in men. If these findings prove reliable, it raises the possibility that different aetiological factors underlie the birth order/sexual orientation relationship in men.

  5. First Things First: Similar List Length and Output Order Effects for Verbal and Nonverbal Stimuli

    ERIC Educational Resources Information Center

    Cortis, Cathleen; Dent, Kevin; Kennett, Steffan; Ward, Geoff

    2015-01-01

    When participants are presented with a short list of unrelated words and they are instructed that they may recall in any order, they nevertheless show a very strong tendency to recall in forward serial order. Thus, if asked to recall "in any orde"r: "hat, mouse, tea, stairs," participants often respond "hat, mouse, tea,…

  6. Bacterial interactomes: Interacting protein partners share similar function and are validated in independent assays more frequently than previously reported.

    DOE PAGES

    Shatsky, Maxim; Allen, Simon; Gold, Barbara; ...

    2016-05-01

    Numerous affinity purification – mass-spectrometry (AP-MS) and yeast two hybrid (Y2H) screens have each defined thousands of pairwise protein-protein interactions (PPIs), most between functionally unrelated proteins. The accuracy of these networks, however, is under debate. Here we present an AP-MS survey of the bacterium Desulfovibrio vulgaris together with a critical reanalysis of nine published bacterial Y2H and AP-MS screens. We have identified 459 high confidence PPIs from D. vulgaris and 391 from Escherichia coli. Compared to the nine published interactomes, our two networks are smaller; are much less highly connected; have significantly lower false discovery rates; and are much moremore » enriched in protein pairs that are encoded in the same operon, have similar functions, and are reproducibly detected in other physical interaction assays. Lastly, our work establishes more stringent benchmarks for the properties of protein interactomes and suggests that bona fide PPIs much more frequently involve protein partners that are annotated with similar functions or that can be validated in independent assays than earlier studies suggested.« less

  7. Bacterial interactomes: Interacting protein partners share similar function and are validated in independent assays more frequently than previously reported.

    SciTech Connect

    Shatsky, Maxim; Allen, Simon; Gold, Barbara; Liu, Nancy L.; Juba, Thomas R.; Elias, Dwayne A; Reveco, Sonia A.; Prathapam, Ramadevi; He, Jennifer; Yang, Wenhong; Szakal, Evelin D.; Liu, Haichuan; Singer, Mary E.; Geller, Jil T.; Lam, Bonita R.; Saini, Avneesh; Trotter, Valentine V.; Hall, Steven C.; Fisher, Susan J.; Brenner, Steven E.; Chhabra, Swapnil; Hazen, Terry C.; Wall, Judy D.; Witkowska, Ewa; Biggin, Mark D.; Chandonia, John-Marc; Butland, Gareth

    2016-05-01

    Numerous affinity purification – mass-spectrometry (AP-MS) and yeast two hybrid (Y2H) screens have each defined thousands of pairwise protein-protein interactions (PPIs), most between functionally unrelated proteins. The accuracy of these networks, however, is under debate. Here we present an AP-MS survey of the bacterium Desulfovibrio vulgaris together with a critical reanalysis of nine published bacterial Y2H and AP-MS screens. We have identified 459 high confidence PPIs from D. vulgaris and 391 from Escherichia coli. Compared to the nine published interactomes, our two networks are smaller; are much less highly connected; have significantly lower false discovery rates; and are much more enriched in protein pairs that are encoded in the same operon, have similar functions, and are reproducibly detected in other physical interaction assays. Lastly, our work establishes more stringent benchmarks for the properties of protein interactomes and suggests that bona fide PPIs much more frequently involve protein partners that are annotated with similar functions or that can be validated in independent assays than earlier studies suggested.

  8. How Similar Are Adult Second Language Learners and Spanish Heritage Speakers? Spanish Clitics and Word Order

    ERIC Educational Resources Information Center

    Montrul, Silvina

    2010-01-01

    Recent studies of heritage speakers, many of whom possess incomplete knowledge of their family language, suggest that these speakers may be linguistically superior to second language (L2) learners only in phonology but not in morphosyntax. This study reexamines this claim by focusing on knowledge of clitic pronouns and word order in 24 L2 learners…

  9. Is Word-Order Similarity Necessary for Cross-Linguistic Structural Priming?

    ERIC Educational Resources Information Center

    Chen, Baoguo; Jia, Yuefang; Wang, Zhu; Dunlap, Susan; Shin, Jeong-Ah

    2013-01-01

    This article presents two experiments employing two structural priming paradigms that investigated whether cross-linguistic syntactic priming occurred in Chinese and English passive sentences that differ in word order (production-to-production priming in Experiment 1 and comprehension-to-production priming in Experiment 2). Results revealed that…

  10. Convergence acceleration for time-independent first-order PDE using optimal PNB-approximations

    SciTech Connect

    Holmgren, S.; Branden, H.

    1996-12-31

    We consider solving time-independent (steady-state) flow problems in 2D or 3D governed by hyperbolic or {open_quotes}almost hyperbolic{close_quotes} systems of partial differential equations (PDE). Examples of such PDE are the Euler and the Navier-Stokes equations. The PDE is discretized using a finite difference or finite volume scheme with arbitrary order of accuracy. If the matrix B describes the discretized differential operator and u denotes the approximate solution, the discrete problem is given by a large system of equations.

  11. Analyzing forced unfolding of protein tandems by ordered variates, 1: Independent unfolding times.

    PubMed

    Bura, E; Klimov, D K; Barsegov, V

    2007-08-15

    Most of the mechanically active proteins are organized into tandems of identical repeats, (D)N, or heterogeneous tandems, D1-D2-...-DN. In current atomic force microscopy experiments, conformational transitions of protein tandems can be accessed by employing constant stretching force f (force-clamp) and by analyzing the recorded unfolding times of individual domains. Analysis of unfolding data for homogeneous tandems relies on the assumption that unfolding times are independent and identically distributed, and involves inference of the (parent) probability density of unfolding times from the histogram of the combined unfolding times. This procedure cannot be used to describe tandems characterized by interdomain interactions, or heteregoneous tandems. In this article, we introduce an alternative approach that is based on recognizing that the observed data are ordered, i.e., first, second, third, etc., unfolding times. The approach is exemplified through the analysis of unfolding times for a computer model of the homogeneous and heterogeneous tandems, subjected to constant force. We show that, in the experimentally accessible range of stretching forces, the independent and identically distributed assumption may not hold. Specifically, the uncorrelated unfolding transitions of individual domains at lower force may become correlated (dependent) at elevated force levels. The proposed formalism can be used in atomic force microscopy experiments to infer the unfolding time distributions of individual domains from experimental histograms of ordered unfolding times, and it can be extended to analyzing protein tandems that exhibit interdomain interactions.

  12. Reflecting Solutions of High Order Elliptic Differential Equations in Two Independent Variables Across Analytic Arcs. Ph.D. Thesis

    NASA Technical Reports Server (NTRS)

    Carleton, O.

    1972-01-01

    Consideration is given specifically to sixth order elliptic partial differential equations in two independent real variables x, y such that the coefficients of the highest order terms are real constants. It is assumed that the differential operator has distinct characteristics and that it can be factored as a product of second order operators. By analytically continuing into the complex domain and using the complex characteristic coordinates of the differential equation, it is shown that its solutions, u, may be reflected across analytic arcs on which u satisfies certain analytic boundary conditions. Moreover, a method is given whereby one can determine a region into which the solution is extensible. It is seen that this region of reflection is dependent on the original domain of difinition of the solution, the arc and the coefficients of the highest order terms of the equation and not on any sufficiently small quantities; i.e., the reflection is global in nature. The method employed may be applied to similar differential equations of order 2n.

  13. Development of Boundary Condition Independent Reduced Order Thermal Models using Proper Orthogonal Decomposition

    NASA Astrophysics Data System (ADS)

    Raghupathy, Arun; Ghia, Karman; Ghia, Urmila

    2008-11-01

    Compact Thermal Models (CTM) to represent IC packages has been traditionally developed using the DELPHI-based (DEvelopment of Libraries of PHysical models for an Integrated design) methodology. The drawbacks of this method are presented, and an alternative method is proposed. A reduced-order model that provides the complete thermal information accurately with less computational resources can be effectively used in system level simulations. Proper Orthogonal Decomposition (POD), a statistical method, can be used to reduce the order of the degree of freedom or variables of the computations for such a problem. POD along with the Galerkin projection allows us to create reduced-order models that reproduce the characteristics of the system with a considerable reduction in computational resources while maintaining a high level of accuracy. The goal of this work is to show that this method can be applied to obtain a boundary condition independent reduced-order thermal model for complex components. The methodology is applied to the 1D transient heat equation.

  14. Plugging Taxonomic Similarity in First-Order Logic Horn Clauses Comparison

    NASA Astrophysics Data System (ADS)

    Ferilli, S.; Biba, M.; di Mauro, N.; Basile, T. M. A.; Esposito, F.

    Horn clause Logic is a powerful representation language exploited in Logic Programming as a computer programming framework and in Inductive Logic Programming as a formalism for expressing examples and learned theories in domains where relations among objects must be expressed to fully capture the relevant information. While the predicates that make up the description language are defined by the knowledge engineer and handled only syntactically by the interpreters, they sometimes express information that can be properly exploited only with reference to a taxonomic background knowledge in order to capture unexpressed and underlying relationships among the concepts described. This is typical when the representation predicates are not purposely engineered but rather derive from the particular words found in a text.

  15. Independently founded populations of Sclerotinia sclerotiorum from a tropical and a temperate region have similar genetic structure

    PubMed Central

    2017-01-01

    Sclerotinia sclerotiorum populations from tropical agricultural zones have been suggested to be more variable compared to those from temperate zones. However, no data were available comparing populations from both zones using the same set of markers. In this study, we compared S. sclerotiorum populations from the United States of America (USA, temperate) and southeast Brazil (tropical) using the frequency of mycelial compatibility groups (MCGs) and 13 microsatellite (SSR) markers. Populations were sourced from diseased plants within leguminous crops in New York, USA (NY; n = 78 isolates), and Minas Gerais State, Brazil (MG; n = 109). Twenty MCGs were identified in NY and 14 were previously reported in MG. The effective number of genotypes based on Hill’s number of order 0, which corresponded to the number of multilocus genotypes (MLGs) were 22 (95% CI = 15.6–28.4) and 24 (95% CI = 18.9–29.1) in NY and MG, respectively. Clonal fractions of MLGs were 71.8% (NY) and 78.0% (MG). The effective number of genotypes based on Hill’s number of orders 1 and 2 in NY were 8.9 (95% CI = 5.2–12.6) and 4.4 (95% CI = 2.6–6.1), respectively. For MG these indices were 11.4 (95% CI = 8.7–14.1) and 7.1 (95% CI = 5.1–9.0), respectively. There were no significant differences of allelic richness, private allelic richness, gene diversity, effective number of alleles and genotype evenness between the NY and MG populations. The populations were differentiated, with 29% of total variance attributed to differences between them and G''ST and Jost’s D indices higher than 0.50. Cluster analysis revealed dissimilarity higher than 80% among most MLGs from both populations. Different alleles segregated in the populations but both had similar levels of genotypic variability. PMID:28296968

  16. Independently founded populations of Sclerotinia sclerotiorum from a tropical and a temperate region have similar genetic structure.

    PubMed

    Lehner, Miller S; de Paula Júnior, Trazilbo J; Del Ponte, Emerson M; Mizubuti, Eduardo S G; Pethybridge, Sarah J

    2017-01-01

    Sclerotinia sclerotiorum populations from tropical agricultural zones have been suggested to be more variable compared to those from temperate zones. However, no data were available comparing populations from both zones using the same set of markers. In this study, we compared S. sclerotiorum populations from the United States of America (USA, temperate) and southeast Brazil (tropical) using the frequency of mycelial compatibility groups (MCGs) and 13 microsatellite (SSR) markers. Populations were sourced from diseased plants within leguminous crops in New York, USA (NY; n = 78 isolates), and Minas Gerais State, Brazil (MG; n = 109). Twenty MCGs were identified in NY and 14 were previously reported in MG. The effective number of genotypes based on Hill's number of order 0, which corresponded to the number of multilocus genotypes (MLGs) were 22 (95% CI = 15.6-28.4) and 24 (95% CI = 18.9-29.1) in NY and MG, respectively. Clonal fractions of MLGs were 71.8% (NY) and 78.0% (MG). The effective number of genotypes based on Hill's number of orders 1 and 2 in NY were 8.9 (95% CI = 5.2-12.6) and 4.4 (95% CI = 2.6-6.1), respectively. For MG these indices were 11.4 (95% CI = 8.7-14.1) and 7.1 (95% CI = 5.1-9.0), respectively. There were no significant differences of allelic richness, private allelic richness, gene diversity, effective number of alleles and genotype evenness between the NY and MG populations. The populations were differentiated, with 29% of total variance attributed to differences between them and G''ST and Jost's D indices higher than 0.50. Cluster analysis revealed dissimilarity higher than 80% among most MLGs from both populations. Different alleles segregated in the populations but both had similar levels of genotypic variability.

  17. The mitochondrial genomes of Amphiascoides atopus and Schizopera knabeni (Harpacticoida: Miraciidae) reveal similarities between the copepod orders Harpacticoida and Poecilostomatoida.

    PubMed

    Easton, Erin E; Darrow, Emily M; Spears, Trisha; Thistle, David

    2014-03-15

    Members of subclass Copepoda are abundant, diverse, and-as a result of their variety of ecological roles in marine and freshwater environments-important, but their phylogenetic interrelationships are unclear. Recent studies of arthropods have used gene arrangements in the mitochondrial (mt) genome to infer phylogenies, but for copepods, only seven complete mt genomes have been published. These data revealed several within-order and few among-order similarities. To increase the data available for comparisons, we sequenced the complete mt genome (13,831base pairs) of Amphiascoides atopus and 10,649base pairs of the mt genome of Schizopera knabeni (both in the family Miraciidae of the order Harpacticoida). Comparison of our data to those for Tigriopus japonicus (family Harpacticidae, order Harpacticoida) revealed similarities in gene arrangement among these three species that were consistent with those found within and among families of other copepod orders. Comparison of the mt genomes of our species with those known from other copepod orders revealed the arrangement of mt genes of our Harpacticoida species to be more similar to that of Sinergasilus polycolpus (order Poecilostomatoida) than to that of T. japonicus. The similarities between S. polycolpus and our species are the first to be noted across the boundaries of copepod orders and support the possibility that mt-gene arrangement might be used to infer copepod phylogenies. We also found that our two species had extremely truncated transfer RNAs and that gene overlaps occurred much more frequently than has been reported for other copepod mt genomes.

  18. eMatchSite: Sequence Order-Independent Structure Alignments of Ligand Binding Pockets in Protein Models

    PubMed Central

    Brylinski, Michal

    2014-01-01

    Detecting similarities between ligand binding sites in the absence of global homology between target proteins has been recognized as one of the critical components of modern drug discovery. Local binding site alignments can be constructed using sequence order-independent techniques, however, to achieve a high accuracy, many current algorithms for binding site comparison require high-quality experimental protein structures, preferably in the bound conformational state. This, in turn, complicates proteome scale applications, where only various quality structure models are available for the majority of gene products. To improve the state-of-the-art, we developed eMatchSite, a new method for constructing sequence order-independent alignments of ligand binding sites in protein models. Large-scale benchmarking calculations using adenine-binding pockets in crystal structures demonstrate that eMatchSite generates accurate alignments for almost three times more protein pairs than SOIPPA. More importantly, eMatchSite offers a high tolerance to structural distortions in ligand binding regions in protein models. For example, the percentage of correctly aligned pairs of adenine-binding sites in weakly homologous protein models is only 4–9% lower than those aligned using crystal structures. This represents a significant improvement over other algorithms, e.g. the performance of eMatchSite in recognizing similar binding sites is 6% and 13% higher than that of SiteEngine using high- and moderate-quality protein models, respectively. Constructing biologically correct alignments using predicted ligand binding sites in protein models opens up the possibility to investigate drug-protein interaction networks for complete proteomes with prospective systems-level applications in polypharmacology and rational drug repositioning. eMatchSite is freely available to the academic community as a web-server and a stand-alone software distribution at http://www.brylinski.org/ematchsite. PMID

  19. 77 FR 52137 - Proposed Order and Request for Comment on a Petition From Certain Independent System Operators...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-08-28

    ... Order Under Section 4(c) of the Commodity Exchange Act by ISO New England Inc.; In the Matter of the... include three RTOs (Midwest Independent Transmission System Operator Inc. (``MISO''); ISO New England, Inc. (``ISO NE''); and PJM Interconnection, L.L.C. (``PJM'')), and two ISOs (California Independent...

  20. Multiple independent origins of mitochondrial control region duplications in the order Psittaciformes

    PubMed Central

    Schirtzinger, Erin E.; Tavares, Erika S.; Gonzales, Lauren A.; Eberhard, Jessica R.; Miyaki, Cristina Y.; Sanchez, Juan J.; Hernandez, Alexis; Müeller, Heinrich; Graves, Gary R.; Fleischer, Robert C.; Wright, Timothy F.

    2012-01-01

    Mitochondrial genomes are generally thought to be under selection for compactness, due to their small size, consistent gene content, and a lack of introns or intergenic spacers. As more animal mitochondrial genomes are fully sequenced, rearrangements and partial duplications are being identified with increasing frequency, particularly in birds (Class Aves). In this study, we investigate the evolutionary history of mitochondrial control region states within the avian order Psittaciformes (parrots and cockatoos). To this aim, we reconstructed a comprehensive multi-locus phylogeny of parrots, used PCR of three diagnostic fragments to classify the mitochondrial control region state as single or duplicated, and mapped these states onto the phylogeny. We further sequenced 44 selected species to validate these inferences of control region state. Ancestral state reconstruction using a range of weighting schemes identified six independent origins of mitochondrial control region duplications within Psittaciformes. Analysis of sequence data showed that varying levels of mitochondrial gene and tRNA homology and degradation were present within a given clade exhibiting duplications. Levels of divergence between control regions within an individual varied from 0–10.9% with the differences occurring mainly between 51 and 225 nucleotides 3′ of the goose hairpin in domain I. Further investigations into the fates of duplicated mitochondrial genes, the potential costs and benefits of having a second control region, and the complex relationship between evolutionary rates, selection, and time since duplication are needed to fully explain these patterns in the mitochondrial genome. PMID:22543055

  1. Mutation-order divergence by sexual selection: diversification of sexual signals in similar environments as a first step in speciation.

    PubMed

    Mendelson, Tamra C; Martin, Michael D; Flaxman, Samuel M

    2014-09-01

    The origin of species remains a central question, and recent research focuses on the role of ecological differences in promoting speciation. Ecological differences create opportunities for divergent selection (i.e. 'ecological' speciation), a Darwinian hypothesis that hardly requires justification. In contrast, 'mutation-order' speciation proposes that, instead of adapting to different environments, populations find different ways to adapt to similar environments, implying that speciation does not require ecological differences. This distinction is critical as it provides an alternative hypothesis to the prevailing view that ecological differences drive speciation. Speciation by sexual selection lies at the centre of debates about the importance of ecological differences in promoting speciation; here, we present verbal and mathematical models of mutation-order divergence by sexual selection. We develop three general cases and provide a two-locus population genetic model for each. Results indicate that alternative secondary sexual traits can fix in populations that initially experience similar natural and sexual selection and that divergent traits and preferences can remain stable in the face of low gene flow. This stable divergence can facilitate subsequent divergence that completes or reinforces speciation. We argue that a mutation-order process could explain widespread diversity in secondary sexual traits among closely related, allopatric species.

  2. The apparent permeabilities of Caco-2 cells to marketed drugs: magnitude, and independence from both biophysical properties and endogenite similarities

    PubMed Central

    O’Hagan, Steve

    2015-01-01

    We bring together fifteen, nonredundant, tabulated collections (amounting to 696 separate measurements) of the apparent permeability (Papp) of Caco-2 cells to marketed drugs. While in some cases there are some significant interlaboratory disparities, most are quite minor. Most drugs are not especially permeable through Caco-2 cells, with the median Papp value being some 16 ⋅ 10−6 cm s−1. This value is considerably lower than those (1,310 and 230 ⋅ 10−6 cm s−1) recently used in some simulations that purported to show that Papp values were too great to be transporter-mediated only. While these values are outliers, all values, and especially the comparatively low values normally observed, are entirely consistent with transporter-only mediated uptake, with no need to invoke phospholipid bilayer diffusion. The apparent permeability of Caco-2 cells to marketed drugs is poorly correlated with either simple biophysical properties, the extent of molecular similarity to endogenous metabolites (endogenites), or any specific substructural properties. In particular, the octanol:water partition coefficient, logP, shows negligible correlation with Caco-2 permeability. The data are best explained on the basis that most drugs enter (and exit) Caco-2 cells via a multiplicity of transporters of comparatively weak specificity. PMID:26618081

  3. Scopolamine and amphetamine produce similar decision-making deficits on a rat gambling task via independent pathways.

    PubMed

    Silveira, Mason M; Malcolm, Emma; Shoaib, Mohammed; Winstanley, Catharine A

    2015-03-15

    Disorders characterized by disturbed cholinergic signaling, such as schizophrenia, exhibit impaired performance on measures of real-world cost/benefit decision-making. Whether the cholinergic system contributes to the choice deficits observed is currently unknown. We therefore determined the effects of broad-acting agonists and antagonists at the nicotinic and muscarinic receptor on decision making, as measured by the rodent gambling task (rGT). Given the anatomical and functional connectivity of the cholinergic and dopaminergic systems, we also sought to modulate amphetamine's previously reported effect on rGT performance via the cholinergic system. Male rats were trained on the rGT, during which animals chose from four different options. The optimal strategy on the rGT is to favor options associated with smaller immediate rewards and less punishment/loss. Impulsive action was also measured by recording the number of premature responses made. Performance on the rGT was assessed following acute treatment with the muscarinic receptor agonist oxotremorine, the muscarinic receptor antagonist scopolamine, nicotine, and the nicotinic receptor antagonist mecamylamine. Similar to the effect produced by amphetamine, muscarinic receptor antagonism with scopolamine (0.1mg/kg) impaired decision making, albeit to a lesser degree. Prior muscarinic agonism with oxotremorine was unable to attenuate amphetamine's effects on rGT performance. Oxotremorine, nicotine, and mecamylamine did not affect the choice profile. We therefore conclude that modulation of the muscarinic, but not nicotinic, receptor system can affect decision making under conditions of risk and uncertainty. Such findings contribute to a broader understanding of the cognitive deficits observed in disorders in which cholinergic signaling is compromised.

  4. The Ordering Challenge: An Online Game to Introduce Independent Demand Inventory Concepts

    ERIC Educational Resources Information Center

    Meyer, Brad C.; Bishop, Debra S.

    2011-01-01

    Students are put in the role of a manager who watches inventory levels decrease and must order at the right time and in the right quantity to minimize costs. This interactive game requires the students to race against time and has levels of increasing difficulty. It introduces the students to the concepts of holding cost, ordering cost, backlog…

  5. Independence of First- and Second-Order Memories in Newborn Rabbits

    ERIC Educational Resources Information Center

    Coureaud, Gerard; Languille, Solene; Joly, Virginie; Schaal, Benoist; Hars, Bernard

    2011-01-01

    The mammary pheromone promotes the acquisition of novel odorants (CS1) in newborn rabbits. Here, experiments pinpoint that CS1 becomes able to support neonatal learning of other odorants (CS2). We therefore evaluated whether these first- and second-order memories remained dependent after reactivation. Amnesia induced after CS2 recall selectively…

  6. Time-Order Errors in Duration Judgment Are Independent of Spatial Positioning

    PubMed Central

    Harrison, Charlotte; Binetti, Nicola; Mareschal, Isabelle; Johnston, Alan

    2017-01-01

    Time-order errors (TOEs) occur when the discriminability between two stimuli are affected by the order in which they are presented. While TOEs have been studied since the 1860s, it is unknown whether the spatial properties of a stimulus will affect this temporal phenomenon. In this experiment, we asked whether perceived duration, or duration discrimination, might be influenced by whether two intervals in a standard two-interval method of constants paradigm were spatially overlapping in visual short-term memory. Two circular sinusoidal gratings (one standard and the other a comparison) were shown sequentially and participants judged which of the two was presented for a longer duration. The test stimuli were either spatially overlapping (in different spatial frames) or separate. Stimulus order was randomized between trials. The standard stimulus lasted 600 ms, and the test stimulus had one of seven possible values (between 300 and 900 ms). There were no overall significant differences observed between spatially overlapping and separate stimuli. However, in trials where the standard stimulus was presented second, TOEs were greater, and participants were significantly less sensitive to differences in duration. TOEs were also greater in conditions involving a saccade. This suggests there is an intrinsic memory component to two interval tasks in that the information from the first interval has to be stored; this is more demanding when the standard is presented in the second interval. Overall, this study suggests that while temporal information may be encoded in some spatial form, it is not dependent on visual short-term memory. PMID:28337162

  7. Previous gestational diabetes is independently associated with increased carotid intima-media thickness, similarly to metabolic syndrome – a case control study

    PubMed Central

    2012-01-01

    Background Women with previous gestational diabetes mellitus (pGDM) face a higher risk of developing type 2 diabetes and, consequently, a higher cardiovascular risk. This study aimed to compare the carotid intima-media thickness (cIMT) from young women with pGDM to those with metabolic syndrome (MS) and to healthy controls (CG) to verify whether a past history of pGDM could be independently associated with increased cIMT. Methods This is a cross-sectional study performed in two academic referral centers. Seventy-nine women with pGDM, 30 women with MS, and 60 CG aged between 18 and 47 years were enrolled. They all underwent physical examination and had blood glucose, total cholesterol, high-density lipoprotein cholesterol, low-density lipoprotein cholesterol (LDLc), and triglycerides determined. The cIMT was measured by ultrasound in several carotid segments. The primary endpoint was cIMT and clinically relevant parameters included as predictors were: age, systolic blood pressure, waist, BMI, total cholesterol, LDLc, triglycerides, fasting glucose, previous history of GDM as a whole group, previous history of GDM without MS, presence of DM, presence of MS, and parity. Results cIMT was significantly higher in pGDM when compared to CG in all sites of measurements (P < 0.05) except for the right common carotid. The pGDM women showed similar cIMT measurements to MS in all sites of measurements, except for the left carotid bifurcation, where it was significantly higher than MS (P < 0.001). In a multivariate analysis which included classical cardiovascular risk factors and was adjusted for confounders, pGDM was shown to be independently associated with increased composite cIMT (P < 0.01). The pGDM without risk factors further showed similar cIMT to MS (P > 0.05) and an increased cIMT when compared to controls (P < 0.05). Conclusions Previous GDM was independently associated with increased composite cIMT in this young population, similarly to those with

  8. Robust Data Driven Model Order Estimation for Independent Component Analysis of fMRI Data with Low Contrast to Noise

    PubMed Central

    Majeed, Waqas; Avison, Malcolm J.

    2014-01-01

    Independent component analysis (ICA) has been successfully utilized for analysis of functional MRI (fMRI) data for task related as well as resting state studies. Although it holds the promise of becoming an unbiased data-driven analysis technique, a few choices have to be made prior to performing ICA, selection of a method for determining the number of independent components (nIC) being one of them. Choice of nIC has been shown to influence the ICA maps, and various approaches (mostly relying on information theoretic criteria) have been proposed and implemented in commonly used ICA analysis packages, such as MELODIC and GIFT. However, there has been no consensus on the optimal method for nIC selection, and many studies utilize arbitrarily chosen values for nIC. Accurate and reliable determination of true nIC is especially important in the setting where the signals of interest contribute only a small fraction of the total variance, i.e. very low contrast-to-noise ratio (CNR), and/or very focal response. In this study, we evaluate the performance of different model order selection criteria and demonstrate that the model order selected based upon bootstrap stability of principal components yields more reliable and accurate estimates of model order. We then demonstrate the utility of this fully data-driven approach to detect weak and focal stimulus-driven responses in real data. Finally, we compare the performance of different multi-run ICA approaches using pseudo-real data. PMID:24788636

  9. n-Order and maximum fuzzy similarity entropy for discrimination of signals of different complexity: Application to fetal heart rate signals.

    PubMed

    Zaylaa, Amira; Oudjemia, Souad; Charara, Jamal; Girault, Jean-Marc

    2015-09-01

    This paper presents two new concepts for discrimination of signals of different complexity. The first focused initially on solving the problem of setting entropy descriptors by varying the pattern size instead of the tolerance. This led to the search for the optimal pattern size that maximized the similarity entropy. The second paradigm was based on the n-order similarity entropy that encompasses the 1-order similarity entropy. To improve the statistical stability, n-order fuzzy similarity entropy was proposed. Fractional Brownian motion was simulated to validate the different methods proposed, and fetal heart rate signals were used to discriminate normal from abnormal fetuses. In all cases, it was found that it was possible to discriminate time series of different complexity such as fractional Brownian motion and fetal heart rate signals. The best levels of performance in terms of sensitivity (90%) and specificity (90%) were obtained with the n-order fuzzy similarity entropy. However, it was shown that the optimal pattern size and the maximum similarity measurement were related to intrinsic features of the time series.

  10. Molecular similarity and property similarity.

    PubMed

    Barbosa, Frédérique; Horvath, Dragos

    2004-01-01

    This paper reviews the main efforts undertaken up to date in order to understand, rationalize and apply the similarity principle (similar compounds=>similar properties) as a computational tool in modern drug discovery. The best suited mathematical expression of this classical working hypothesis of medicinal chemistry needs to be carefully chosen (out of the virtually infinite possible implementations in terms of molecular descriptors and molecular similarity metrics), in order to achieve an optimal validation of the hypothesis that molecules that are neighbors in the Structural Space will also display similar properties. This overview will show why no single "absolute" measure of molecular similarity can be conceived, and why molecular similarity scores should be considered tunable tools that need to be adapted to each problem to solve.

  11. A gauge-independent zeroth-order regular approximation to the exact relativistic Hamiltonian--formulation and applications.

    PubMed

    Filatov, Michael; Cremer, Dieter

    2005-01-22

    A simple modification of the zeroth-order regular approximation (ZORA) in relativistic theory is suggested to suppress its erroneous gauge dependence to a high level of approximation. The method, coined gauge-independent ZORA (ZORA-GI), can be easily installed in any existing nonrelativistic quantum chemical package by programming simple one-electron matrix elements for the quasirelativistic Hamiltonian. Results of benchmark calculations obtained with ZORA-GI at the Hartree-Fock (HF) and second-order Moller-Plesset perturbation theory (MP2) level for dihalogens X(2) (X=F,Cl,Br,I,At) are in good agreement with the results of four-component relativistic calculations (HF level) and experimental data (MP2 level). ZORA-GI calculations based on MP2 or coupled-cluster theory with single and double perturbations and a perturbative inclusion of triple excitations [CCSD(T)] lead to accurate atomization energies and molecular geometries for the tetroxides of group VIII elements. With ZORA-GI/CCSD(T), an improved estimate for the atomization energy of hassium (Z=108) tetroxide is obtained.

  12. Physicochemical, bioactive, and sensory properties of persimmon-based ice cream: technique for order preference by similarity to ideal solution to determine optimum concentration.

    PubMed

    Karaman, Safa; Toker, Ömer Said; Yüksel, Ferhat; Çam, Mustafa; Kayacier, Ahmed; Dogan, Mahmut

    2014-01-01

    In the present study, persimmon puree was incorporated into the ice cream mix at different concentrations (8, 16, 24, 32, and 40%) and some physicochemical (dry matter, ash, protein, pH, sugar, fat, mineral, color, and viscosity), textural (hardness, stickiness, and work of penetration), bioactive (antiradical activity and total phenolic content), and sensory properties of samples were investigated. The technique for order preference by similarity to ideal solution approach was used for the determination of optimum persimmon puree concentration based on the sensory and bioactive characteristics of final products. Increase in persimmon puree resulted in a decrease in the dry matter, ash, fat, protein contents, and viscosity of ice cream mix. Glucose, fructose, sucrose, and lactose were determined to be major sugars in the ice cream samples including persimmon and increase in persimmon puree concentration increased the fructose and glucose content. Better melting properties and textural characteristics were observed for the samples with the addition of persimmon. Magnesium, K, and Ca were determined to be major minerals in the samples and only K concentration increased with the increase in persimmon content. Bioactive properties of ice cream samples improved and, in general, acetone-water extracts showed higher bioactivity compared with ones obtained using methanol-water extracts. The technique for order preference by similarity to ideal solution approach showed that the most preferred sample was the ice cream containing 24% persimmon puree.

  13. 2, 2'- and 4, 4'-Cyanines are transporter-independent in vitro dopaminergic toxins with the specificity and mechanism of toxicity similar to MPP⁺.

    PubMed

    Kadigamuwa, Chamila C; Le, Viet Q; Wimalasena, Kandatege

    2015-11-01

    Specific uptake through dopamine transporter followed by the inhibition of the mitochondrial complex-I have been accepted as the cause of the specific dopaminergic toxicity of 1-methyl-4-phenylpyridinium (MPP(+) ). However, MPP(+) is taken up into many cell types through other transporters, suggesting that, in addition to the efficient uptake, intrinsic vulnerability of dopaminergic cells may also contribute to their high sensitivity to MPP(+) and similar toxins. To test this possibility, two simple cyanines were employed in a comparative study based on their unique characteristics and structural similarity to MPP(+) . Here, we show that they freely accumulate in dopaminergic (MN9D and SH-SY5Y) as well as in liver (HepG2) cells, but are specifically and highly toxic to dopaminergic cells with IC50s in the range of 50-100 nM, demonstrating that they are about 1000-fold more toxic than MPP(+) under similar experimental conditions. They cause mitochondrial depolarization non-specifically, but increase the reactive oxygen species specifically in dopaminergic cells leading to the apoptotic cell death parallel to MPP(+) . These and other findings suggest that the specific dopaminergic toxicity of these cyanines is due to the inherent vulnerability of dopaminergic cells toward mitochondrial toxins that lead to the excessive production of reactive oxygen species. Therefore, the specific dopaminergic toxicity of MPP(+) must also be, at least partly, due to the specific vulnerability of dopaminergic neurons. Thus, these cyanines could be stronger in vivo dopaminergic toxins than MPP(+) and their in vivo toxicities must be evaluated. Here, we show that cationic lipophilic cyanines with structural similarity to 1-methyl-4-phenylpyridinium (MPP(+) ) freely accumulate non-specifically, but only toxic to dopaminergic cells. They are 1000-fold more toxic than MPP(+) under similar conditions. They cause mitochondrial depolarization non-specifically, but increase the ROS

  14. Independent ordering of two interpenetrating magnetic sublattices in the double perovskite Sr2CoOsO6.

    PubMed

    Morrow, Ryan; Mishra, Rohan; Restrepo, Oscar D; Ball, Molly R; Windl, Wolfgang; Wurmehl, Sabine; Stockert, Ulrike; Büchner, Bernd; Woodward, Patrick M

    2013-12-18

    The insulating, fully ordered, double perovskite Sr2CoOsO6 undergoes two magnetic phase transitions. The Os(VI) ions order antiferromagnetically with a propagation vector k = (1/2, 1/2, 0) below TN1 = 108 K, while the high-spin Co(II) ions order antiferromagnetically with a propagation vector k = (1/2, 0, 1/2) below TN2 = 70 K. Ordering of the Os(VI) spins is accompanied by a structural distortion from tetragonal I4/m symmetry to monoclinic I2/m symmetry, which reduces the frustration of the face centered cubic lattice of Os(VI) ions. Density functional theory calculations show that the long-range Os-O-Co-O-Os and Co-O-Os-O-Co superexchange interactions are considerably stronger than the shorter Os-O-Co interactions. The poor energetic overlap between the 3d orbitals of Co and the 5d orbitals of Os appears to be responsible for this unusual inversion in the strength of short and long-range superexchange interactions.

  15. Artifact Free and Detection Profile Independent Higher Order Fluorescence Correlation Spectroscopy for Microsecond Resolved Kinetics. 2. Mixtures and Reactions.

    PubMed

    Abdollah-Nia, Farshad; Gelfand, Martin P; Van Orden, Alan K

    2017-02-09

    Fluorescence correlation spectroscopy (FCS) is a primary tool in the time-resolved analysis of non-reacting or reacting molecules in solution, based on fluorescence intensity fluctuations. However, conventional FCS alone is insufficient for complete determination of reaction or mixture parameters. In an accompanying article, a technique for computation of artifact-free higher-order correlations with microsecond time resolution was described. Here, we demonstrate applications of the technique to analyze systems of fast and slow reactions. As an example of slow- or non-reacting systems, the technique is applied to resolve two-component mixtures of labeled oligonucleotides. Next, the protonation reaction of fluorescein isothiocyanate (FITC) in phosphate buffer is analyzed as an example of fast reactions (relaxation time <1 μs ). By reference to an (apparent) non-reacting system, the simple factorized form of cumulant-based higher-order correlations is exploited to remove the dependence on the molecular detection function (MDF). Therefore, there is no need to model and characterize the experimental MDF, and the precision and the accuracy of the technique are enhanced. It is verified that higher-order correlation analysis enables complete and simultaneous determination of number and brightness parameters of mixing or reacting molecules, the reaction relaxation time, and forward and reverse reaction rates.

  16. Increasing the contrast of the brain MR FLAIR images using fuzzy membership functions and structural similarity indices in order to segment MS lesions.

    PubMed

    Bijar, Ahmad; Khayati, Rasoul; Peñalver Benavent, Antonio

    2013-01-01

    Segmentation is an important step for the diagnosis of multiple sclerosis (MS). This paper presents a new approach to the fully automatic segmentation of MS lesions in Fluid Attenuated Inversion Recovery (FLAIR) Magnetic Resonance (MR) images. With the aim of increasing the contrast of the FLAIR MR images with respect to the MS lesions, the proposed method first estimates the fuzzy memberships of brain tissues (i.e., the cerebrospinal fluid (CSF), the normal-appearing brain tissue (NABT), and the lesion). The procedure for determining the fuzzy regions of their member functions is performed by maximizing fuzzy entropy through Genetic Algorithm. Research shows that the intersection points of the obtained membership functions are not accurate enough to segment brain tissues. Then, by extracting the structural similarity (SSIM) indices between the FLAIR MR image and its lesions membership image, a new contrast-enhanced image is created in which MS lesions have high contrast against other tissues. Finally, the new contrast-enhanced image is used to segment MS lesions. To evaluate the result of the proposed method, similarity criteria from all slices from 20 MS patients are calculated and compared with other methods, which include manual segmentation. The volume of segmented lesions is also computed and compared with Gold standard using the Intraclass Correlation Coefficient (ICC) and paired samples t test. Similarity index for the patients with small lesion load, moderate lesion load and large lesion load was 0.7261, 0.7745 and 0.8231, respectively. The average overall similarity index for all patients is 0.7649. The t test result indicates that there is no statistically significant difference between the automatic and manual segmentation. The validated results show that this approach is very promising.

  17. Valdecoxib Recovers the Lipid Composition, Order and Dynamics in Colon Cancer Cell Lines Independent of COX-2 Expression: An ATR-FTIR Spectroscopy Study.

    PubMed

    Inan Genç, Aysun; Gok, Seher; Banerjee, Sreeparna; Severcan, Feride

    2017-01-01

    Prostanoids play an important role in a variety of physiological and pathophysiological processes including inflammation and cancer. The rate-limiting step in the prostanoid biosynthesis pathway is catalyzed by cyclooxygenases (COXs). Aberrant expression of the inducible isoform COX-2 plays a significant role in colon cancer initiation and progression. In this study, we have hypothesized that COX-2 specific inhibitors such as Valdecoxib (VLX), being highly hydrophobic, may alter biophysical properties of cellular lipids. In this study, COX-2 expressing (HT29) and COX-2 non-expressing (SW620) colon cancer cell lines were treated with VLX and examined using attenuated total reflection infrared spectroscopy. The results revealed that VLX treatment decreased lipid fluidity in the cells irrespective of COX-2 expression status and affected order parameters of the lipids in both cell lines. Cluster analysis also indicated that the spectral differences between the two cell lines are profound and could be successfully differentiated. Valdecoxib treatment could enhance the composition, order and dynamics of the lipids of colon cancer cells independently of its COX-2 inhibitory mechanism. Valdecoxib has therapeutic effects upon colon cancer, therefore it can be used as an adjuvant and/or chemopreventive agent for colon cancer.

  18. Understanding independence

    NASA Astrophysics Data System (ADS)

    Annan, James; Hargreaves, Julia

    2016-04-01

    In order to perform any Bayesian processing of a model ensemble, we need a prior over the ensemble members. In the case of multimodel ensembles such as CMIP, the historical approach of ``model democracy'' (i.e. equal weight for all models in the sample) is no longer credible (if it ever was) due to model duplication and inbreeding. The question of ``model independence'' is central to the question of prior weights. However, although this question has been repeatedly raised, it has not yet been satisfactorily addressed. Here I will discuss the issue of independence and present a theoretical foundation for understanding and analysing the ensemble in this context. I will also present some simple examples showing how these ideas may be applied and developed.

  19. Order Effects of Learning with Modeling and Simulation Software on Field-Dependent and Field-Independent Children's Cognitive Performance: An Interaction Effect

    ERIC Educational Resources Information Center

    Angeli, Charoula; Valanides, Nicos; Polemitou, Eirini; Fraggoulidou, Elena

    2014-01-01

    The study examined the interaction between field dependence-independence (FD/I) and learning with modeling software and simulations, and their effect on children's performance. Participants were randomly assigned into two groups. Group A first learned with a modeling tool and then with simulations. Group B learned first with simulations and then…

  20. Artifact-Free and Detection-Profile-Independent Higher-Order Fluorescence Correlation Spectroscopy for Microsecond-Resolved Kinetics. 1. Multidetector and Sub-Binning Approach.

    PubMed

    Abdollah-Nia, Farshad; Gelfand, Martin P; Van Orden, Alan

    2017-03-10

    Fluorescence correlation spectroscopy (FCS) is a powerful tool in the time-resolved analysis of nonreacting or reacting molecules in solution, based on fluorescence intensity fluctuations. However, conventional (second-order) FCS alone is insufficient to measure all parameters needed to describe a reaction or mixture, including concentrations, fluorescence brightnesses, and forward and reverse rate constants. For this purpose, correlations of higher powers of fluorescence intensity fluctuations can be calculated to yield additional information from the single-photon data stream collected in an FCS experiment. To describe systems of diffusing and reacting molecules, considering cumulants of fluorescence intensity results in simple expressions in which the reaction and diffusion parts factorize. The computation of higher-order correlations in experiments is hindered by shot-noise and common detector artifacts, the effects of which become worse with increasing order. In this article, we introduce a technique to calculate artifact-free higher-order correlation functions with improved time resolution, and without any need for modeling and calibration of detector artifacts. The technique is formulated for general multidetector experiments and verified in both two-detector and single-detector configurations. Good signal-to-noise ratio is achieved down to 1 μs in correlation curves up to order (2, 2). This capability makes possible a variety of new measurements including multicomponent analysis and fast reaction kinetics, as demonstrated in a companion article (10.1021/acs.jpcb.7b00408).

  1. Next-to-leading-order QCD corrections to the top-quark decay via model-independent flavor-changing neutral-current couplings.

    PubMed

    Zhang, Jia Jun; Li, Chong Sheng; Gao, Jun; Zhang, Hao; Li, Zhao; Yuan, C-P; Yuan, Tzu-Chiang

    2009-02-20

    D0 and CDF collaborations at the Fermilab Tevatron have searched for nonstandard-model single top-quark production and have set upper limits on the anomalous top-quark flavor-changing neutral-current (FCNC) couplings kappatcg/Lambda and kappatug/Lambda using the measurement of the total cross section calculated at the next-to-leading order (NLO) in QCD. In this Letter, we report on the effect of anomalous FCNC couplings to various decay branching ratios of the top quark, calculated at the NLO. This result is not only mandatory for a consistent treatment of both the top-quark production and decay via FCNC couplings by D0 and CDF at the Tevatron, but is also important for the study of ATLAS and CMS sensitivity to these anomalous couplings at the CERN LHC.

  2. Creating Multi Objective Value Functions from Non-Independent Values

    DTIC Science & Technology

    2009-03-01

    problems and inconsistencies which make it undesirable for many DMs ( Dyer , 1990), it does help in “…deriving dominance priorities from paired...side note, there exists a similar but stronger independence concept called utility independence. Keeney explains that for a single attribute x1 to be... utility independent of the remaining attributes preference order for lotteries involving only changes in the levels of attributes in x1 does not

  3. Are Independent Probes Truly Independent?

    ERIC Educational Resources Information Center

    Camp, Gino; Pecher, Diane; Schmidt, Henk G.; Zeelenberg, Rene

    2009-01-01

    The independent cue technique has been developed to test traditional interference theories against inhibition theories of forgetting. In the present study, the authors tested the critical criterion for the independence of independent cues: Studied cues not presented during test (and unrelated to test cues) should not contribute to the retrieval…

  4. Biosimilar Insulins: How Similar is Similar?

    PubMed Central

    Heinemann, Lutz; Hompesch, Marcus

    2011-01-01

    Biosimilar insulins (BIs) are viewed as commercially attractive products by a number of companies. In order to obtain approval in the European Union or the United States, where there is not a single BI currently on the market, a manufacturer needs to demonstrate that a given BI has a safety and efficacy profile that is similar to that of the “original” insulin formulation that is already on the market. As trivial as this may appear at first glance, it is not trivial at all for a good number of reasons that will be discussed in this commentary. As with protein manufacturing, modifications in the structure of the insulin molecule can take place (which can have serious consequences for the biological effects induced), so a rigid and careful assessment is absolutely necessary. The example of Marvel's failed application with the European Medicines Agency provides insights into the regulatory and clinical challenges surrounding the matter of BI. Although a challenging BI approval process might be regarded as a hurdle to keep companies out of certain markets, it is fair to say that the potential safety and efficacy issues surrounding BI are substantial and relevant and do warrant a careful and evidence-driven approval process. PMID:21722590

  5. Salam's independence

    NASA Astrophysics Data System (ADS)

    Fraser, Gordon

    2009-01-01

    In his kind review of my biography of the Nobel laureate Abdus Salam (December 2008 pp45-46), John W Moffat wrongly claims that Salam had "independently thought of the idea of parity violation in weak interactions".

  6. Independent Living.

    ERIC Educational Resources Information Center

    Nathanson, Jeanne H., Ed.

    1994-01-01

    This issue of "OSERS" addresses the subject of independent living of individuals with disabilities. The issue includes a message from Judith E. Heumann, the Assistant Secretary of the Office of Special Education and Rehabilitative Services (OSERS), and 10 papers. Papers have the following titles and authors: "Changes in the…

  7. Independence and Survival.

    ERIC Educational Resources Information Center

    James, H. Thomas

    Independent schools that are of viable size, well managed, and strategically located to meet competition will survive and prosper past the current financial crisis. We live in a complex technological society with insatiable demands for knowledgeable people to keep it running. The future will be marked by the orderly selection of qualified people,…

  8. 'Independence' Panorama

    NASA Technical Reports Server (NTRS)

    2005-01-01

    [figure removed for brevity, see original site] Click on the image for 'Independence' Panorama (QTVR)

    This is the Spirit 'Independence' panorama, acquired on martian days, or sols, 536 to 543 (July 6 to 13, 2005), from a position in the 'Columbia Hills' near the summit of 'Husband Hill.' The summit of 'Husband Hill' is the peak near the right side of this panorama and is about 100 meters (328 feet) away from the rover and about 30 meters (98 feet) higher in elevation. The rocky outcrops downhill and on the left side of this mosaic include 'Larry's Lookout' and 'Cumberland Ridge,' which Spirit explored in April, May, and June of 2005.

    The panorama spans 360 degrees and consists of 108 individual images, each acquired with five filters of the rover's panoramic camera. The approximate true color of the mosaic was generated using the camera's 750-, 530-, and 480-nanometer filters. During the 8 martian days, or sols, that it took to acquire this image, the lighting varied considerably, partly because of imaging at different times of sol, and partly because of small sol-to-sol variations in the dustiness of the atmosphere. These slight changes produced some image seams and rock shadows. These seams have been eliminated from the sky portion of the mosaic to better simulate the vista a person standing on Mars would see. However, it is often not possible or practical to smooth out such seams for regions of rock, soil, rover tracks or solar panels. Such is the nature of acquiring and assembling large panoramas from the rovers.

  9. Molecular similarity measures.

    PubMed

    Maggiora, Gerald M; Shanmugasundaram, Veerabahu

    2011-01-01

    Molecular similarity is a pervasive concept in chemistry. It is essential to many aspects of chemical reasoning and analysis and is perhaps the fundamental assumption underlying medicinal chemistry. Dissimilarity, the complement of similarity, also plays a major role in a growing number of applications of molecular diversity in combinatorial chemistry, high-throughput screening, and related fields. How molecular information is represented, called the representation problem, is important to the type of molecular similarity analysis (MSA) that can be carried out in any given situation. In this work, four types of mathematical structure are used to represent molecular information: sets, graphs, vectors, and functions. Molecular similarity is a pairwise relationship that induces structure into sets of molecules, giving rise to the concept of chemical space. Although all three concepts - molecular similarity, molecular representation, and chemical space - are treated in this chapter, the emphasis is on molecular similarity measures. Similarity measures, also called similarity coefficients or indices, are functions that map pairs of compatible molecular representations that are of the same mathematical form into real numbers usually, but not always, lying on the unit interval. This chapter presents a somewhat pedagogical discussion of many types of molecular similarity measures, their strengths and limitations, and their relationship to one another. An expanded account of the material on chemical spaces presented in the first edition of this book is also provided. It includes a discussion of the topography of activity landscapes and the role that activity cliffs in these landscapes play in structure-activity studies.

  10. Molecular similarity measures.

    PubMed

    Maggiora, Gerald M; Shanmugasundaram, Veerabahu

    2004-01-01

    Molecular similarity is a pervasive concept in chemistry. It is essential to many aspects of chemical reasoning and analysis and is perhaps the fundamental assumption underlying medicinal chemistry. Dissimilarity, the complement of similarity, also plays a major role in a growing number of applications of molecular diversity in combinatorial chemistry, high-throughput screening, and related fields. How molecular information is represented, called the representation problem, is important to the type of molecular similarity analysis (MSA) that can be carried out in any given situation. In this work, four types of mathematical structure are used to represent molecular information: sets, graphs, vectors, and functions. Molecular similarity is a pairwise relationship that induces structure into sets of molecules, giving rise to the concept of a chemistry space. Although all three concepts molecular similarity, molecular representation, and chemistry space are treated in this chapter, the emphasis is on molecular similarity measures. Similarity measures, also called similarity coefficients or indices, are functions that map pairs of compatible molecular representations, that is, representations of the same mathematical form, into real numbers usually, but not always, lying on the unit interval. This chapter presents a somewhat pedagogical discussion of many types of molecular similarity measures, their strengths and limitations, and their relationship to one another.

  11. The Gender Similarities Hypothesis

    ERIC Educational Resources Information Center

    Hyde, Janet Shibley

    2005-01-01

    The differences model, which argues that males and females are vastly different psychologically, dominates the popular media. Here, the author advances a very different view, the gender similarities hypothesis, which holds that males and females are similar on most, but not all, psychological variables. Results from a review of 46 meta-analyses…

  12. Higher-order force gradient symplectic algorithms

    NASA Astrophysics Data System (ADS)

    Chin, Siu A.; Kidwell, Donald W.

    2000-12-01

    We show that a recently discovered fourth order symplectic algorithm, which requires one evaluation of force gradient in addition to three evaluations of the force, when iterated to higher order, yielded algorithms that are far superior to similarly iterated higher order algorithms based on the standard Forest-Ruth algorithm. We gauge the accuracy of each algorithm by comparing the step-size independent error functions associated with energy conservation and the rotation of the Laplace-Runge-Lenz vector when solving a highly eccentric Kepler problem. For orders 6, 8, 10, and 12, the new algorithms are approximately a factor of 103, 104, 104, and 105 better.

  13. The gender similarities hypothesis.

    PubMed

    Hyde, Janet Shibley

    2005-09-01

    The differences model, which argues that males and females are vastly different psychologically, dominates the popular media. Here, the author advances a very different view, the gender similarities hypothesis, which holds that males and females are similar on most, but not all, psychological variables. Results from a review of 46 meta-analyses support the gender similarities hypothesis. Gender differences can vary substantially in magnitude at different ages and depend on the context in which measurement occurs. Overinflated claims of gender differences carry substantial costs in areas such as the workplace and relationships.

  14. Additive Similarity Trees

    ERIC Educational Resources Information Center

    Sattath, Shmuel; Tversky, Amos

    1977-01-01

    Tree representations of similarity data are investigated. Hierarchical clustering is critically examined, and a more general procedure, called the additive tree, is presented. The additive tree representation is then compared to multidimensional scaling. (Author/JKS)

  15. Where Similarity Beats Redundancy: The Importance of Context, Higher Order Similarity, and Response Assignment

    ERIC Educational Resources Information Center

    Eidels, Ami; Townsend, James T.; Pomerantz, James R.

    2008-01-01

    People are especially efficient in processing certain visual stimuli such as human faces or good configurations. It has been suggested that topology and geometry play important roles in configural perception. Visual search is one area in which configurality seems to matter. When either of 2 target features leads to a correct response and the…

  16. The Qualitative Similarity Hypothesis

    ERIC Educational Resources Information Center

    Paul, Peter V.; Lee, Chongmin

    2010-01-01

    Evidence is presented for the qualitative similarity hypothesis (QSH) with respect to children and adolescents who are d/Deaf or hard of hearing. The primary focus is on the development of English language and literacy skills, and some information is provided on the acquisition of English as a second language. The QSH is briefly discussed within…

  17. Comparison of hydrological similarity measures

    NASA Astrophysics Data System (ADS)

    Rianna, Maura; Ridolfi, Elena; Manciola, Piergiorgio; Napolitano, Francesco; Russo, Fabio

    2016-04-01

    The use of a traditional at site approach for the statistical characterization and simulation of spatio-temporal precipitation fields has a major recognized drawback. Indeed, the weakness of the methodology is related to the estimation of rare events and it involves the uncertainty of the at-site sample statistical inference, because of the limited length of records. In order to overcome the lack of at-site observations, regional frequency approach uses the idea of substituting space for time to estimate design floods. The conventional regional frequency analysis estimates quantile values at a specific site from multi-site analysis. The main idea is that homogeneous sites, once pooled together, have similar probability distribution curves of extremes, except for a scaling factor. The method for pooling groups of sites can be based on geographical or climatological considerations. In this work the region of influence (ROI) pooling method is compared with an entropy-based one. The ROI is a flexible pooling group approach which defines for each site its own "region" formed by a unique set of similar stations. The similarity is found through the Euclidean distance metric in the attribute space. Here an alternative approach based on entropy is introduced to cluster homogeneous sites. The core idea is that homogeneous sites share a redundant (i.e. similar) amount of information. Homogeneous sites are pooled through a hierarchical selection based on the mutual information index (i.e. a measure of redundancy). The method is tested on precipitation data in Central Italy area.

  18. Similar enzymes, different structures

    PubMed Central

    Tarasev, Michael; Kaddis, Catherine S.; Yin, Sheng; Loo, Joseph A.; Burgner, John; Ballou, David P.

    2007-01-01

    Phthalate dioxygenase (PDO) is a member of a class of bacterial oxygenases that contain both Rieske [2Fe-2S] and Fe(II) mononuclear centers. Recent crystal structures of several Rieske dioxygenases showed that they exist as α3β3 multimers with subunits arranged head-to-tail in α and β stacked planar consists of only α-subunits, remains to be solved. Although similar to other Rieske dioxygenases in many aspects, PDO was shown to differ in the mechanism of catalysis. Gel filtration and analytical centrifugation experiments, supplemented with mass spectrometric analysis (both ESI-MS and ESI-GEMMA), in this work showed a hexameric arrangement of subunits in the PDO multimer. Our proposed model for the subunit arrangement in PDO postulates two α3 planar rings one on top the other, similar to the α3β3 arrangement in other Rieske dioxygenases. Unlike other Rieske dioxygenases, this arrangement brings two Rieske and two mononuclear centers, all on separate subunits, into proximity, allowing their cooperation for catalysis. Potential reasons necessitating this unusual structural arrangement are discussed. PMID:17764654

  19. Distorting limb design for dynamically similar locomotion.

    PubMed Central

    Bullimore, Sharon R.; Burn, Jeremy F.

    2004-01-01

    Terrestrial mammals of different sizes tend to move in a dynamically similar manner when travelling at speeds corresponding to equal values of the Froude number. This means that certain dimensionless locomotor parameters, including peak vertical ground reaction force relative to body weight, stride length relative to leg length and duty factor, are independent of animal size. The Froude number is consequently used to define equivalent speeds for mammals of different sizes. However, most musculoskeletal-tissue properties, including tendon elastic modulus, do not scale in a dynamically similar manner. Therefore, mammals could not be completely dynamically similar, even if perfectly geometrically similar. We argue that, for mammals to move in a dynamically similar manner, they must exhibit systematic 'distortions' of limb structure with size that compensate for the size independence of the tendon elastic modulus. An implication of this is that comparing mammals at equal Froude numbers cannot remove all size-dependent effects. We show that the previously published allometry of limb moment arms is sufficient to compensate for size-independent tendon properties. This suggests that it is an important factor in allowing mammals of different sizes to move in a dynamically similar manner. PMID:15058440

  20. Similarity transformed semiclassical dynamics

    NASA Astrophysics Data System (ADS)

    Van Voorhis, Troy; Heller, Eric J.

    2003-12-01

    In this article, we employ a recently discovered criterion for selecting important contributions to the semiclassical coherent state propagator [T. Van Voorhis and E. J. Heller, Phys. Rev. A 66, 050501 (2002)] to study the dynamics of many dimensional problems. We show that the dynamics are governed by a similarity transformed version of the standard classical Hamiltonian. In this light, our selection criterion amounts to using trajectories generated with the untransformed Hamiltonian as approximate initial conditions for the transformed boundary value problem. We apply the new selection scheme to some multidimensional Henon-Heiles problems and compare our results to those obtained with the more sophisticated Herman-Kluk approach. We find that the present technique gives near-quantitative agreement with the the standard results, but that the amount of computational effort is less than Herman-Kluk requires even when sophisticated integral smoothing techniques are employed in the latter.

  1. What causes similarity in catchments?

    NASA Astrophysics Data System (ADS)

    Savenije, Hubert

    2014-05-01

    One of the biggest issues in hydrology is how to handle the heterogeneity of catchment properties at different scales. But is this really such a big issue? Is this problem not merely the consequence of how we conceptualise and how we model catchments? Is there not far more similarity than we observe. Maybe we are not looking at the right things or at the right scale to see the similarity. The identity of catchments is largely determined by: the landscape, the ecosystem living on the landscape, and the geology, in that order. Soils, which are often seen as a crucial aspect of hydrological behaviour, are far less important, as will be demonstrated. The main determinants of hydrological behaviour are: the landscape composition, the rooting depth and the phenology. These determinants are a consequence of landscape and ecosystem evolution, which, in turn, are the manifestations of entropy production. There are striking similarities between catchments. The different runoff processes from hillslopes are linked and similar in different environments (McDonnell, 2013). Wetlands behave similarly all over the world. The key is to classify landscapes and to link the ecosystems living on them to climate. The ecosystem then is the main controller of hydrological behaviour. Besides phenology, the rooting depth is key in determining runoff behaviour. Both are strongly linked to climate and much less to soil properties. An example is given of how rooting depth is determined by climate, and how rooting depth can be predicted without calibration, providing a strong constraints on the prediction of rainfall partitioning and catchment runoff.

  2. Self-similar breakup of near-inviscid liquids

    NASA Astrophysics Data System (ADS)

    Castrejon-Pita, Alfonso A.; Castrejon-Pita, J. Rafael; Lister, John R.; Hinch, E. John; Hutchings, Ian M.

    2012-11-01

    Experimental results are presented for the final stages of drop pinch-off and ligament breakup for different initial conditions. Water and ethanol were used as working fluids. High-speed imaging and image analysis were utilized in order to determine the contraction rate of the thinning neck and the shape of the liquid thread just before the breakup. Our results show that the geometry of the breakup of near-inviscid fluids is self-similar in the domain of simple dripping. We also demonstrate that, independently of the initial conditions, the necking of these liquids scales with τ 2 / 3, asymptotically giving a unique breakup angle of 18 . 0 +/- 0 .4° . Both observations are in complete agreement with previous theoretical predictions. The angle converges towards self similarity like τ 1 / 2, also as predicted. Project supported by the EPSRC-UK (EP/G029458/1 and EP/H018913/1) and Cambridge-KACST.

  3. GS-align for glycan structure alignment and similarity measurement

    PubMed Central

    Lee, Hui Sun; Jo, Sunhwan; Mukherjee, Srayanta; Park, Sang-Jun; Skolnick, Jeffrey; Lee, Jooyoung; Im, Wonpil

    2015-01-01

    Motivation: Glycans play critical roles in many biological processes, and their structural diversity is key for specific protein-glycan recognition. Comparative structural studies of biological molecules provide useful insight into their biological relationships. However, most computational tools are designed for protein structure, and despite their importance, there is no currently available tool for comparing glycan structures in a sequence order- and size-independent manner. Results: A novel method, GS-align, is developed for glycan structure alignment and similarity measurement. GS-align generates possible alignments between two glycan structures through iterative maximum clique search and fragment superposition. The optimal alignment is then determined by the maximum structural similarity score, GS-score, which is size-independent. Benchmark tests against the Protein Data Bank (PDB) N-linked glycan library and PDB homologous/non-homologous N-glycoprotein sets indicate that GS-align is a robust computational tool to align glycan structures and quantify their structural similarity. GS-align is also applied to template-based glycan structure prediction and monosaccharide substitution matrix generation to illustrate its utility. Availability and implementation: http://www.glycanstructure.org/gsalign. Contact: wonpil@ku.edu Supplementary information: Supplementary data are available at Bioinformatics online. PMID:25857669

  4. Independent Peer Reviews

    SciTech Connect

    2012-03-16

    Independent Assessments: DOE's Systems Integrator convenes independent technical reviews to gauge progress toward meeting specific technical targets and to provide technical information necessary for key decisions.

  5. Variable Order and Distributed Order Fractional Operators

    NASA Technical Reports Server (NTRS)

    Lorenzo, Carl F.; Hartley, Tom T.

    2002-01-01

    Many physical processes appear to exhibit fractional order behavior that may vary with time or space. The continuum of order in the fractional calculus allows the order of the fractional operator to be considered as a variable. This paper develops the concept of variable and distributed order fractional operators. Definitions based on the Riemann-Liouville definitions are introduced and behavior of the operators is studied. Several time domain definitions that assign different arguments to the order q in the Riemann-Liouville definition are introduced. For each of these definitions various characteristics are determined. These include: time invariance of the operator, operator initialization, physical realization, linearity, operational transforms. and memory characteristics of the defining kernels. A measure (m2) for memory retentiveness of the order history is introduced. A generalized linear argument for the order q allows the concept of "tailored" variable order fractional operators whose a, memory may be chosen for a particular application. Memory retentiveness (m2) and order dynamic behavior are investigated and applications are shown. The concept of distributed order operators where the order of the time based operator depends on an additional independent (spatial) variable is also forwarded. Several definitions and their Laplace transforms are developed, analysis methods with these operators are demonstrated, and examples shown. Finally operators of multivariable and distributed order are defined in their various applications are outlined.

  6. Culture independent PCR: an alternative enzyme discovery strategy.

    PubMed

    Jacobsen, Jonas; Lydolph, Magnus; Lange, Lene

    2005-01-01

    Degenerate primers were designed for use in a culture-independent PCR screening of DNA from composite fungal communities, inhabiting residues of corn stovers and leaves. According to similarity searches and alignments amplified clone sequences affiliated with glycosyl hydrolase family 7 and glycosyl hydrolase family 45 though significant sequence divergence was observed. Glycosyl hydrolases from families 7 and 45 play a crucial role in biomass conversion to fuel ethanol. Research in this renewable energy source has two objectives: (i) To contribute to development of a renewable alternative to world's limited crude fossil oil reserves and (ii) to reduce air pollution. Amplification with 18S rDNA-specific primers revealed species within the ascomycetous orders Sordariales and Hypocreales as well as basidiomycetous order Agaricales to be present in these communities. Our study documents the value of culture-independent PCR in microbial diversity studies and could add to development of a new enzyme screening technology.

  7. Independent Study in Iowa.

    ERIC Educational Resources Information Center

    Idaho Univ., Moscow.

    This guide to independent study in Idaho begins with introductory information on the following aspects of independent study: the Independent Study in Idaho consortium, student eligibility, special needs, starting dates, registration, costs, textbooks and instructional materials, e-mail and faxing, refunds, choosing a course, time limits, speed…

  8. Order Theoretical Semantic Recommendation

    SciTech Connect

    Joslyn, Cliff A.; Hogan, Emilie A.; Paulson, Patrick R.; Peterson, Elena S.; Stephan, Eric G.; Thomas, Dennis G.

    2013-07-23

    Mathematical concepts of order and ordering relations play multiple roles in semantic technologies. Discrete totally ordered data characterize both input streams and top-k rank-ordered recommendations and query output, while temporal attributes establish numerical total orders, either over time points or in the more complex case of startend temporal intervals. But also of note are the fully partially ordered data, including both lattices and non-lattices, which actually dominate the semantic strcuture of ontological systems. Scalar semantic similarities over partially-ordered semantic data are traditionally used to return rank-ordered recommendations, but these require complementation with true metrics available over partially ordered sets. In this paper we report on our work in the foundations of partial order measurement in ontologies, with application to top-k semantic recommendation in workflows.

  9. Criteria for dynamic similarity in bouncing gaits.

    PubMed

    Bullimore, Sharon R; Donelan, J Maxwell

    2008-01-21

    Animals of different sizes tend to move in a dynamically similar manner when travelling at speeds corresponding to equal values of a dimensionless parameter (DP) called the Froude number. Consequently, the Froude number has been widely used for defining equivalent speeds and predicting speeds of locomotion by extinct species and on other planets. However, experiments using simulated reduced gravity have demonstrated that equality of the Froude number does not guarantee dynamic similarity. This has cast doubt upon the usefulness of the Froude number in locomotion research. Here we use dimensional analysis of the planar spring-mass model, combined with Buckingham's Pi-Theorem, to demonstrate that four DPs must be equal for dynamic similarity in bouncing gaits such as trotting, hopping and bipedal running. This can be reduced to three DPs by applying the constraint of maintaining a constant average speed of locomotion. Sensitivity analysis indicates that all of these DPs are important for predicting dynamic similarity. We show that the reason humans do not run in a dynamically similar manner at equal Froude number in different levels of simulated reduced gravity is that dimensionless leg stiffness decreases as gravity increases. The reason that the Froude number can predict dynamic similarity in Earth gravity is that dimensionless leg stiffness and dimensionless vertical landing speed are both independent of size. In conclusion, although equal Froude number is not sufficient for dynamic similarity, it is a necessary condition. Therefore, to detect fundamental differences in locomotion, animals of different sizes should be compared at equal Froude number, so that they can be as close to dynamic similarity as possible. More generally, the concept of dynamic similarity provides a powerful framework within which similarities and differences in locomotion can be interpreted.

  10. An Approach to Keeping Independent Colleges Independent.

    ERIC Educational Resources Information Center

    Northwest Area Foundation, St. Paul, Minn.

    As a result of the financial difficulties faced by independent colleges in the northwestern United States, the Northwest Area Foundation in 1972 surveyed the administrations of 80 private colleges to get a profile of the colleges, a list of their current problems, and some indication of how the problems might be approached. The three top problems…

  11. Nuclear markers reveal that inter-lake cichlids' similar morphologies do not reflect similar genealogy.

    PubMed

    Kassam, Daud; Seki, Shingo; Horic, Michio; Yamaoka, Kosaku

    2006-08-01

    The apparent inter-lake morphological similarity among East African Great Lakes' cichlid species/genera has left evolutionary biologists asking whether such similarity is due to sharing of common ancestor or mere convergent evolution. In order to answer such question, we first used Geometric Morphometrics, GM, to quantify morphological similarity and then subsequently used Amplified Fragment Length Polymorphism, AFLP, to determine if similar morphologies imply shared ancestry or convergent evolution. GM revealed that not all presumed morphological similar pairs were indeed similar, and the dendrogram generated from AFLP data indicated distinct clusters corresponding to each lake and not inter-lake morphological similar pairs. Such results imply that the morphological similarity is due to convergent evolution and not shared ancestry. The congruency of GM and AFLP generated dendrograms imply that GM is capable of picking up phylogenetic signal, and thus GM can be potential tool in phylogenetic systematics.

  12. Order Up

    ERIC Educational Resources Information Center

    Gibeault, Michael

    2005-01-01

    Change orders. The words can turn the stomachs of administrators. Horror stories about change orders create fear and distrust among school officials, designers and builders. Can change orders be avoided? If car manufacturers can produce millions of intricately designed vehicles, why can't the same quality control be achieved on a construction…

  13. Hiring and Retaining Great Independent School Teachers

    ERIC Educational Resources Information Center

    Balossi, Matt; Hernández, Natalie R.

    2016-01-01

    While numerous studies measure teacher effectiveness in public schools, there is little research on teacher quality among independent schools. In fact, the topic of teacher quality in public schools receives widespread media coverage, funding, and special interest. In order to better understand how independent schools describe high-quality…

  14. The Case of the Similar Trees.

    ERIC Educational Resources Information Center

    Meyer, Rochelle Wilson

    1982-01-01

    A possible logical flaw based on similar triangles is discussed with the Sherlock Holmes mystery, "The Muskgrave Ritual." The possible flaw has to do with the need for two trees to have equal growth rates over a 250-year period in order for the solution presented to work. (MP)

  15. American Independence. Fifth Grade.

    ERIC Educational Resources Information Center

    Crosby, Annette

    This fifth grade teaching unit covers early conflicts between the American colonies and Britain, battles of the American Revolutionary War, and the Declaration of Independence. Knowledge goals address the pre-revolutionary acts enforced by the British, the concepts of conflict and independence, and the major events and significant people from the…

  16. Independence of Internal Auditors.

    ERIC Educational Resources Information Center

    Montondon, Lucille; Meixner, Wilda F.

    1993-01-01

    A survey of 288 college and university auditors investigated patterns in their appointment, reporting, and supervisory practices as indicators of independence and objectivity. Results indicate a weakness in the positioning of internal auditing within institutions, possibly compromising auditor independence. Because the auditing function is…

  17. Feature matching algorithm based on spatial similarity

    NASA Astrophysics Data System (ADS)

    Tang, Wenjing; Hao, Yanling; Zhao, Yuxin; Li, Ning

    2008-10-01

    The disparities of features that represent the same real world entities from disparate sources usually occur, thus the identification or matching of features is crutial to the map conflation. Motivated by the idea of identifying the same entities through integrating known information by eyes, the feature matching algorithm based on spatial similarity is proposed in this paper. Total similarity is obtained by integrating positional similarity, shape similarity and size similarity with a weighted average algorithm, then the matching entities is achieved according to the maximum total similarity. The matching of areal features is analyzed in detail. Regarding the areal feature as a whole, the proposed algorithm identifies the same areal features by their shape-center points in order to calculate their positional similarity, and shape similarity is given by the function of describing the shape, which ensures its precision not be affected by interferes and avoids the loss of shape information, furthermore the size of areal features is measured by their covered areas. Test results show the stability and reliability of the proposed algorithm, and its precision and recall are higher than other matching algorithm.

  18. Learning similarity with multikernel method.

    PubMed

    Tang, Yi; Li, Luoqing; Li, Xuelong

    2011-02-01

    In the field of machine learning, it is a key issue to learn and represent similarity. This paper focuses on the problem of learning similarity with a multikernel method. Motivated by geometric intuition and computability, similarity between patterns is proposed to be measured by their included angle in a kernel-induced Hilbert space. Having noticed that the cosine of such an included angle can be represented by a normalized kernel, it can be said that the task of learning similarity is equivalent to learning an appropriate normalized kernel. In addition, an error bound is also established for learning similarity with the multikernel method. Based on this bound, a boosting-style algorithm is developed. The preliminary experiments validate the effectiveness of the algorithm for learning similarity.

  19. Similarity Learning of Manifold Data.

    PubMed

    Chen, Si-Bao; Ding, Chris H Q; Luo, Bin

    2015-09-01

    Without constructing adjacency graph for neighborhood, we propose a method to learn similarity among sample points of manifold in Laplacian embedding (LE) based on adding constraints of linear reconstruction and least absolute shrinkage and selection operator type minimization. Two algorithms and corresponding analyses are presented to learn similarity for mix-signed and nonnegative data respectively. The similarity learning method is further extended to kernel spaces. The experiments on both synthetic and real world benchmark data sets demonstrate that the proposed LE with new similarity has better visualization and achieves higher accuracy in classification.

  20. Similarities between catalase and cytosolic epoxide hydrolase.

    PubMed

    Guenthner, T M; Qato, M; Whalen, R; Glomb, S

    1989-01-01

    Cytosolic epoxide hydrolase, measured as trans-stilbene oxide hydrolase activity, was isolated and purified from human and guinea pig liver cytosol. Antiserum to the guinea pig liver preparation reacted strongly with bovine liver catalase. We determined that this lack of selectivity of the antiserum was due to catalase contamination of the epoxide hydrolase preparation. We also determined that several commercial catalase preparations are contaminated with cytosolic epoxide hydrolase. Our human epoxide hydrolase preparation contained no detectable catalase contamination, yet antiserum to this protein also cross-reacted slightly with catalase, indicating some intrinsic similarity between the two enzymes. We conclude that catalase and cytosolic epoxide hydrolase contain some similar immunogenic epitopes, and we surmise that similarities between the subunits of these two enzymes may lead to their partial copurification. Functional similarities between the two enzymes are also demonstrated, as several compounds that inhibit catalase are also shown to inhibit cytosolic epoxide hydrolase activity in the same concentration range and rank order.

  1. Self-similarity in Laplacian growth

    SciTech Connect

    Mineev-weinstein, Mark; Zabrodin, Anton; Abanov, Artem

    2008-01-01

    We consider Laplacian Growth of self-similar domains in different geometries. Self-similarity determines the analytic structure of the Schwarz function of the moving boundary. The knowledge of this analytic structure allows us to derive the integral equation for the conformal map. It is shown that solutions to the integral equation obey also a second-order differential equation which is the 1D Schroedinger equation with the sinh{sup -2}-potential. The solutions, which are expressed through the Gauss hypergeometric function, characterize the geometry of self-similar patterns in a wedge. We also find the potential for the Coulomb gas representation of the self-similar Laplacian growth in a wedge and calculate the corresponding free energy.

  2. Discuss Similarity Using Visual Intuition

    ERIC Educational Resources Information Center

    Cox, Dana C.; Lo, Jane-Jane

    2012-01-01

    The change in size from a smaller shape to a larger similar shape (or vice versa) is created through continuous proportional stretching or shrinking in every direction. Students cannot solve similarity tasks simply by iterating or partitioning a composed unit, strategies typically used on numerical proportional tasks. The transition to thinking…

  3. Dynamic similarity in erosional processes

    USGS Publications Warehouse

    Scheidegger, A.E.

    1963-01-01

    A study is made of the dynamic similarity conditions obtaining in a variety of erosional processes. The pertinent equations for each type of process are written in dimensionless form; the similarity conditions can then easily be deduced. The processes treated are: raindrop action, slope evolution and river erosion. ?? 1963 Istituto Geofisico Italiano.

  4. Horton Law in Self-Similar Trees

    NASA Astrophysics Data System (ADS)

    Kovchegov, Yevgeniy; Zaliapin, Ilya

    2016-04-01

    Self-similarity of random trees is related to the operation of pruning. Pruning ℛ cuts the leaves and their parental edges and removes the resulting chains of degree-two nodes from a finite tree. A Horton-Strahler order of a vertex v and its parental edge is defined as the minimal number of prunings necessary to eliminate the subtree rooted at v. A branch is a group of neighboring vertices and edges of the same order. The Horton numbers 𝒩k[K] and 𝒩ij[K] are defined as the expected number of branches of order k, and the expected number of order-i branches that merged order-j branches, j > i, respectively, in a finite tree of order K. The Tokunaga coefficients are defined as Tij[K] = 𝒩ij[K]/𝒩j[K]. The pruning decreases the orders of tree vertices by unity. A rooted full binary tree is said to be mean-self-similar if its Tokunaga coefficients are invariant with respect to pruning: Tk := Ti,i+k[K]. We show that for self-similar trees, the condition limsupk→∞Tk1/k < ∞ is necessary and sufficient for the existence of the strong Horton law: 𝒩k[K]/𝒩1[K] → R1-k, as K →∞ for some R > 0 and every k ≥ 1. This work is a step toward providing rigorous foundations for the Horton law that, being omnipresent in natural branching systems, has escaped so far a formal explanation.

  5. Towards personalized medicine: leveraging patient similarity and drug similarity analytics.

    PubMed

    Zhang, Ping; Wang, Fei; Hu, Jianying; Sorrentino, Robert

    2014-01-01

    The rapid adoption of electronic health records (EHR) provides a comprehensive source for exploratory and predictive analytic to support clinical decision-making. In this paper, we investigate how to utilize EHR to tailor treatments to individual patients based on their likelihood to respond to a therapy. We construct a heterogeneous graph which includes two domains (patients and drugs) and encodes three relationships (patient similarity, drug similarity, and patient-drug prior associations). We describe a novel approach for performing a label propagation procedure to spread the label information representing the effectiveness of different drugs for different patients over this heterogeneous graph. The proposed method has been applied on a real-world EHR dataset to help identify personalized treatments for hypercholesterolemia. The experimental results demonstrate the effectiveness of the approach and suggest that the combination of appropriate patient similarity and drug similarity analytics could lead to actionable insights for personalized medicine. Particularly, by leveraging drug similarity in combination with patient similarity, our method could perform well even on new or rarely used drugs for which there are few records of known past performance.

  6. Statistical assessment of dissolution and drug release profile similarity using a model-dependent approach.

    PubMed

    Berry, Mark R; Likar, Michael D

    2007-10-18

    A general multivariate procedure for assessing the similarity of dissolution and drug release profiles was developed. A mathematical model is fit to the data, and Hotelling's T(2) test is used to calculate the joint confidence region around the vector of differences between least-squares estimates of the parameters in the model. The method of Lagrange multipliers is used to determine if this confidence region is enclosed within a predetermined similarity region, and profile similarity is claimed if this is the case. The first-order, Gompertz, logistic, second-order, and Weibull models were fit to the in vitro extended-release profile of pseudoephedrine HCl from an asymmetric membrane (AM) film-coated osmotic tablet. The first-order model was selected because of its simplicity and because it was the best-fitting model according to a modified form of Akaike's Information Criterion. A nonlinear response surface model was also developed so that the formulator could calculate how much of the AM film coat should be applied in order to obtain the desired drug release profile. The usefulness of this model-dependent procedure was further demonstrated during an analytical method transfer exercise, where it was used to compare the drug release profiles obtained by two independent laboratories; additional research is required, however, before the appropriate acceptance criteria for demonstrating profile similarity can be recommended.

  7. Media independent interface

    NASA Technical Reports Server (NTRS)

    1987-01-01

    The work done on the Media Independent Interface (MII) Interface Control Document (ICD) program is described and recommendations based on it were made. Explanations and rationale for the content of the ICD itself are presented.

  8. Renewing the respect for similarity.

    PubMed

    Edelman, Shimon; Shahbazi, Reza

    2012-01-01

    In psychology, the concept of similarity has traditionally evoked a mixture of respect, stemming from its ubiquity and intuitive appeal, and concern, due to its dependence on the framing of the problem at hand and on its context. We argue for a renewed focus on similarity as an explanatory concept, by surveying established results and new developments in the theory and methods of similarity-preserving associative lookup and dimensionality reduction-critical components of many cognitive functions, as well as of intelligent data management in computer vision. We focus in particular on the growing family of algorithms that support associative memory by performing hashing that respects local similarity, and on the uses of similarity in representing structured objects and scenes. Insofar as these similarity-based ideas and methods are useful in cognitive modeling and in AI applications, they should be included in the core conceptual toolkit of computational neuroscience. In support of this stance, the present paper (1) offers a discussion of conceptual, mathematical, computational, and empirical aspects of similarity, as applied to the problems of visual object and scene representation, recognition, and interpretation, (2) mentions some key computational problems arising in attempts to put similarity to use, along with their possible solutions, (3) briefly states a previously developed similarity-based framework for visual object representation, the Chorus of Prototypes, along with the empirical support it enjoys, (4) presents new mathematical insights into the effectiveness of this framework, derived from its relationship to locality-sensitive hashing (LSH) and to concomitant statistics, (5) introduces a new model, the Chorus of Relational Descriptors (ChoRD), that extends this framework to scene representation and interpretation, (6) describes its implementation and testing, and finally (7) suggests possible directions in which the present research program can be

  9. Renewing the respect for similarity

    PubMed Central

    Edelman, Shimon; Shahbazi, Reza

    2012-01-01

    In psychology, the concept of similarity has traditionally evoked a mixture of respect, stemming from its ubiquity and intuitive appeal, and concern, due to its dependence on the framing of the problem at hand and on its context. We argue for a renewed focus on similarity as an explanatory concept, by surveying established results and new developments in the theory and methods of similarity-preserving associative lookup and dimensionality reduction—critical components of many cognitive functions, as well as of intelligent data management in computer vision. We focus in particular on the growing family of algorithms that support associative memory by performing hashing that respects local similarity, and on the uses of similarity in representing structured objects and scenes. Insofar as these similarity-based ideas and methods are useful in cognitive modeling and in AI applications, they should be included in the core conceptual toolkit of computational neuroscience. In support of this stance, the present paper (1) offers a discussion of conceptual, mathematical, computational, and empirical aspects of similarity, as applied to the problems of visual object and scene representation, recognition, and interpretation, (2) mentions some key computational problems arising in attempts to put similarity to use, along with their possible solutions, (3) briefly states a previously developed similarity-based framework for visual object representation, the Chorus of Prototypes, along with the empirical support it enjoys, (4) presents new mathematical insights into the effectiveness of this framework, derived from its relationship to locality-sensitive hashing (LSH) and to concomitant statistics, (5) introduces a new model, the Chorus of Relational Descriptors (ChoRD), that extends this framework to scene representation and interpretation, (6) describes its implementation and testing, and finally (7) suggests possible directions in which the present research program can be

  10. Does morphological convergence imply functional similarity? A test using the evolution of quadrupedalism in ornithischian dinosaurs.

    PubMed

    Maidment, Susannah C R; Barrett, Paul M

    2012-09-22

    Convergent morphologies are thought to indicate functional similarity, arising because of a limited number of evolutionary or developmental pathways. Extant taxa displaying convergent morphologies are used as analogues to assess function in extinct taxa with similar characteristics. However, functional studies of extant taxa have shown that functional similarity can arise from differing morphologies, calling into question the paradigm that form and function are closely related. We test the hypothesis that convergent skeletal morphology indicates functional similarity in the fossil record using ornithischian dinosaurs. The rare transition from bipedality to quadrupedality occurred at least three times independently in this clade, resulting in a suite of convergent osteological characteristics. We use homology rather than analogy to provide an independent line of evidence about function, reconstructing soft tissues using the extant phylogenetic bracket and applying biomechanical concepts to produce qualitative assessments of muscle leverage. We also optimize character changes to investigate the sequence of character acquisition. Different lineages of quadrupedal ornithischian dinosaur stood and walked differently from each other, falsifying the hypothesis that osteological convergence indicates functional similarity. The acquisition of features correlated with quadrupedalism generally occurs in the same order in each clade, suggesting underlying developmental mechanisms that act as evolutionary constraints.

  11. Does morphological convergence imply functional similarity? A test using the evolution of quadrupedalism in ornithischian dinosaurs

    PubMed Central

    Maidment, Susannah C. R.; Barrett, Paul M.

    2012-01-01

    Convergent morphologies are thought to indicate functional similarity, arising because of a limited number of evolutionary or developmental pathways. Extant taxa displaying convergent morphologies are used as analogues to assess function in extinct taxa with similar characteristics. However, functional studies of extant taxa have shown that functional similarity can arise from differing morphologies, calling into question the paradigm that form and function are closely related. We test the hypothesis that convergent skeletal morphology indicates functional similarity in the fossil record using ornithischian dinosaurs. The rare transition from bipedality to quadrupedality occurred at least three times independently in this clade, resulting in a suite of convergent osteological characteristics. We use homology rather than analogy to provide an independent line of evidence about function, reconstructing soft tissues using the extant phylogenetic bracket and applying biomechanical concepts to produce qualitative assessments of muscle leverage. We also optimize character changes to investigate the sequence of character acquisition. Different lineages of quadrupedal ornithischian dinosaur stood and walked differently from each other, falsifying the hypothesis that osteological convergence indicates functional similarity. The acquisition of features correlated with quadrupedalism generally occurs in the same order in each clade, suggesting underlying developmental mechanisms that act as evolutionary constraints. PMID:22719033

  12. Self-similar aftershock rates

    NASA Astrophysics Data System (ADS)

    Davidsen, Jörn; Baiesi, Marco

    2016-08-01

    In many important systems exhibiting crackling noise—an intermittent avalanchelike relaxation response with power-law and, thus, self-similar distributed event sizes—the "laws" for the rate of activity after large events are not consistent with the overall self-similar behavior expected on theoretical grounds. This is particularly true for the case of seismicity, and a satisfying solution to this paradox has remained outstanding. Here, we propose a generalized description of the aftershock rates which is both self-similar and consistent with all other known self-similar features. Comparing our theoretical predictions with high-resolution earthquake data from Southern California we find excellent agreement, providing particularly clear evidence for a unified description of aftershocks and foreshocks. This may offer an improved framework for time-dependent seismic hazard assessment and earthquake forecasting.

  13. Self-similar aftershock rates.

    PubMed

    Davidsen, Jörn; Baiesi, Marco

    2016-08-01

    In many important systems exhibiting crackling noise-an intermittent avalanchelike relaxation response with power-law and, thus, self-similar distributed event sizes-the "laws" for the rate of activity after large events are not consistent with the overall self-similar behavior expected on theoretical grounds. This is particularly true for the case of seismicity, and a satisfying solution to this paradox has remained outstanding. Here, we propose a generalized description of the aftershock rates which is both self-similar and consistent with all other known self-similar features. Comparing our theoretical predictions with high-resolution earthquake data from Southern California we find excellent agreement, providing particularly clear evidence for a unified description of aftershocks and foreshocks. This may offer an improved framework for time-dependent seismic hazard assessment and earthquake forecasting.

  14. Similarity of the Velocity Profile

    DTIC Science & Technology

    2014-10-01

    su x (with 0 constantb = ) is the empirically derived velocity scale developed by Zagarola and Smits [5] for turbulent boundary layer flow...Zagarola and Smits and others have shown that the velocity scaling factor given by Eq. 5 with sδ as the boundary layer thickness can collapse certain...and Smits , it is important to point out that the fact that the similarity length scale factor and the similarity velocity scale factor must follow

  15. Do rats learn conditional independence?

    PubMed Central

    Timberlake, William

    2017-01-01

    If acquired associations are to accurately represent real relevance relations, there is motivation for the hypothesis that learning will, in some circumstances, be more appropriately modelled, not as direct dependence, but as conditional independence. In a serial compound conditioning experiment, two groups of rats were presented with a conditioned stimulus (CS1) that imperfectly (50%) predicted food, and was itself imperfectly predicted by a CS2. Groups differed in the proportion of CS2 presentations that were ultimately followed by food (25% versus 75%). Thus, the information presented regarding the relevance of CS2 to food was ambiguous between direct dependence and conditional independence (given CS1). If rats learnt that food was conditionally independent of CS2, given CS1, subjects of both groups should thereafter respond similarly to CS2 alone. Contrary to the conditionality hypothesis, subjects attended to the direct food predictability of CS2, suggesting that rats treat even distal stimuli in a CS sequence as immediately relevant to food, not conditional on an intermediate stimulus. These results urge caution in representing indirect associations as conditional associations, accentuate the theoretical weight of the Markov condition in graphical models, and challenge theories to articulate the conditions under which animals are expected to learn conditional associations, if ever. PMID:28386451

  16. Similarity Metrics for Closed Loop Dynamic Systems

    NASA Technical Reports Server (NTRS)

    Whorton, Mark S.; Yang, Lee C.; Bedrossian, Naz; Hall, Robert A.

    2008-01-01

    To what extent and in what ways can two closed-loop dynamic systems be said to be "similar?" This question arises in a wide range of dynamic systems modeling and control system design applications. For example, bounds on error models are fundamental to the controller optimization with modern control design methods. Metrics such as the structured singular value are direct measures of the degree to which properties such as stability or performance are maintained in the presence of specified uncertainties or variations in the plant model. Similarly, controls-related areas such as system identification, model reduction, and experimental model validation employ measures of similarity between multiple realizations of a dynamic system. Each area has its tools and approaches, with each tool more or less suited for one application or the other. Similarity in the context of closed-loop model validation via flight test is subtly different from error measures in the typical controls oriented application. Whereas similarity in a robust control context relates to plant variation and the attendant affect on stability and performance, in this context similarity metrics are sought that assess the relevance of a dynamic system test for the purpose of validating the stability and performance of a "similar" dynamic system. Similarity in the context of system identification is much more relevant than are robust control analogies in that errors between one dynamic system (the test article) and another (the nominal "design" model) are sought for the purpose of bounding the validity of a model for control design and analysis. Yet system identification typically involves open-loop plant models which are independent of the control system (with the exception of limited developments in closed-loop system identification which is nonetheless focused on obtaining open-loop plant models from closed-loop data). Moreover the objectives of system identification are not the same as a flight test and

  17. Packing density of rigid aggregates is independent of scale

    PubMed Central

    Zangmeister, Christopher D.; Radney, James G.; Dockery, Lance T.; Young, Jessica T.; Ma, Xiaofei; You, Rian; Zachariah, Michael R.

    2014-01-01

    Large planetary seedlings, comets, microscale pharmaceuticals, and nanoscale soot particles are made from rigid, aggregated subunits that are compacted under low compression into larger structures spanning over 10 orders of magnitude in dimensional space. Here, we demonstrate that the packing density (θf) of compacted rigid aggregates is independent of spatial scale for systems under weak compaction. The θf of rigid aggregated structures across six orders of magnitude were measured using nanoscale spherical soot aerosol composed of aggregates with ∼17-nm monomeric subunits and aggregates made from uniform monomeric 6-mm spherical subunits at the macroscale. We find θf = 0.36 ± 0.02 at both dimensions. These values are remarkably similar to θf observed for comet nuclei and measured values of other rigid aggregated systems across a wide variety of spatial and formative conditions. We present a packing model that incorporates the aggregate morphology and show that θf is independent of both monomer and aggregate size. These observations suggest that the θf of rigid aggregates subject to weak compaction forces is independent of spatial dimension across varied formative conditions. PMID:24927577

  18. Dreaming and waking: similarities and differences revisited.

    PubMed

    Kahan, Tracey L; LaBerge, Stephen P

    2011-09-01

    Dreaming is often characterized as lacking high-order cognitive (HOC) skills. In two studies, we test the alternative hypothesis that the dreaming mind is highly similar to the waking mind. Multiple experience samples were obtained from late-night REM sleep and waking, following a systematic protocol described in Kahan (2001). Results indicated that reported dreaming and waking experiences are surprisingly similar in their cognitive and sensory qualities. Concurrently, ratings of dreaming and waking experiences were markedly different on questions of general reality orientation and logical organization (e.g., the bizarreness or typicality of the events, actions, and locations). Consistent with other recent studies (e.g., Bulkeley & Kahan, 2008; Kozmová & Wolman, 2006), experiences sampled from dreaming and waking were more similar with respect to their process features than with respect to their structural features.

  19. Characterizing limit order prices

    NASA Astrophysics Data System (ADS)

    Withanawasam, R. M.; Whigham, P. A.; Crack, Timothy Falcon

    2013-11-01

    A computational model of a limit order book is used to study the effect of different limit order distribution offsets. Reference prices such as same side/contra side best market prices and last traded price are considered in combination with different price offset distributions. We show that when characterizing limit order prices, varying the offset distribution only produces different behavior when the reference price is the contra side best price. Irrespective of the underlying mechanisms used in computing the limit order prices, the shape of the price graph and the behavior of the average order book profile distribution are strikingly similar in all the considered reference prices/offset distributions. This implies that existing averaging methods can cancel variabilities in limit order book shape/attributes and may be misleading.

  20. Quantifying Similarity in Seismic Polarizations

    NASA Astrophysics Data System (ADS)

    Eaton, D. W. S.; Jones, J. P.; Caffagni, E.

    2015-12-01

    Measuring similarity in seismic attributes can help identify tremor, low S/N signals, and converted or reflected phases, in addition to diagnosing site noise and sensor misalignment in arrays. Polarization analysis is a widely accepted method for studying the orientation and directional characteristics of seismic phases via. computed attributes, but similarity is ordinarily discussed using qualitative comparisons with reference values. Here we introduce a technique for quantitative polarization similarity that uses weighted histograms computed in short, overlapping time windows, drawing on methods adapted from the image processing and computer vision literature. Our method accounts for ambiguity in azimuth and incidence angle and variations in signal-to-noise (S/N) ratio. Using records of the Mw=8.3 Sea of Okhotsk earthquake from CNSN broadband sensors in British Columbia and Yukon Territory, Canada, and vertical borehole array data from a monitoring experiment at Hoadley gas field, central Alberta, Canada, we demonstrate that our method is robust to station spacing. Discrete wavelet analysis extends polarization similarity to the time-frequency domain in a straightforward way. Because histogram distance metrics are bounded by [0 1], clustering allows empirical time-frequency separation of seismic phase arrivals on single-station three-component records. Array processing for automatic seismic phase classification may be possible using subspace clustering of polarization similarity, but efficient algorithms are required to reduce the dimensionality.

  1. What difference reveals about similarity.

    PubMed

    Sagi, Eyal; Gentner, Dedre; Lovett, Andrew

    2012-08-01

    Detecting that two images are different is faster for highly dissimilar images than for highly similar images. Paradoxically, we showed that the reverse occurs when people are asked to describe how two images differ--that is, to state a difference between two images. Following structure-mapping theory, we propose that this disassociation arises from the multistage nature of the comparison process. Detecting that two images are different can be done in the initial (local-matching) stage, but only for pairs with low overlap; thus, "different" responses are faster for low-similarity than for high-similarity pairs. In contrast, identifying a specific difference generally requires a full structural alignment of the two images, and this alignment process is faster for high-similarity pairs. We described four experiments that demonstrate this dissociation and show that the results can be simulated using the Structure-Mapping Engine. These results pose a significant challenge for nonstructural accounts of similarity comparison and suggest that structural alignment processes play a significant role in visual comparison.

  2. Independent technical review, handbook

    SciTech Connect

    Not Available

    1994-02-01

    Purpose Provide an independent engineering review of the major projects being funded by the Department of Energy, Office of Environmental Restoration and Waste Management. The independent engineering review will address questions of whether the engineering practice is sufficiently developed to a point where a major project can be executed without significant technical problems. The independent review will focus on questions related to: (1) Adequacy of development of the technical base of understanding; (2) Status of development and availability of technology among the various alternatives; (3) Status and availability of the industrial infrastructure to support project design, equipment fabrication, facility construction, and process and program/project operation; (4) Adequacy of the design effort to provide a sound foundation to support execution of project; (5) Ability of the organization to fully integrate the system, and direct, manage, and control the execution of a complex major project.

  3. Counterbalancing for Serial Order Carryover Effects in Experimental Condition Orders

    ERIC Educational Resources Information Center

    Brooks, Joseph L.

    2012-01-01

    Reactions of neural, psychological, and social systems are rarely, if ever, independent of previous inputs and states. The potential for serial order carryover effects from one condition to the next in a sequence of experimental trials makes counterbalancing of condition order an essential part of experimental design. Here, a method is proposed…

  4. Homebirth and independent midwifery.

    PubMed

    Harris, G

    2000-07-01

    Why do women choose to give birth at home, and midwives to work independently, in a culture that does little to support this option? This article looks at the reasons childbearing women and midwives make these choices and the barriers to achieving them. The safety of the homebirth option is supported in reference to analysis of mortality and morbidity. Homebirth practices and level of success are compared in Australia and New Zealand (NZ), in particular, and The Netherlands, England and America. The success of popularity of homebirths is analysed in terms of socio-economic status. The current situation and challenges of independent midwifery in Darwin are described.

  5. Latent semantic analysis cosines as a cognitive similarity measure: Evidence from priming studies.

    PubMed

    Günther, Fritz; Dudschig, Carolin; Kaup, Barbara

    2016-01-01

    In distributional semantics models (DSMs) such as latent semantic analysis (LSA), words are represented as vectors in a high-dimensional vector space. This allows for computing word similarities as the cosine of the angle between two such vectors. In two experiments, we investigated whether LSA cosine similarities predict priming effects, in that higher cosine similarities are associated with shorter reaction times (RTs). Critically, we applied a pseudo-random procedure in generating the item material to ensure that we directly manipulated LSA cosines as an independent variable. We employed two lexical priming experiments with lexical decision tasks (LDTs). In Experiment 1 we presented participants with 200 different prime words, each paired with one unique target. We found a significant effect of cosine similarities on RTs. The same was true for Experiment 2, where we reversed the prime-target order (primes of Experiment 1 were targets in Experiment 2, and vice versa). The results of these experiments confirm that LSA cosine similarities can predict priming effects, supporting the view that they are psychologically relevant. The present study thereby provides evidence for qualifying LSA cosine similarities not only as a linguistic measure, but also as a cognitive similarity measure. However, it is also shown that other DSMs can outperform LSA as a predictor of priming effects.

  6. What Difference Reveals about Similarity

    ERIC Educational Resources Information Center

    Sagi, Eyal; Gentner, Dedre; Lovett, Andrew

    2012-01-01

    Detecting that two images are different is faster for highly dissimilar images than for highly similar images. Paradoxically, we showed that the reverse occurs when people are asked to describe "how" two images differ--that is, to state a difference between two images. Following structure-mapping theory, we propose that this…

  7. Phylogenetic metrics of community similarity.

    PubMed

    Ives, Anthony R; Helmus, Matthew R

    2010-11-01

    We derive a new metric of community similarity that takes into account the phylogenetic relatedness among species. This metric, phylogenetic community dissimilarity (PCD), can be partitioned into two components, a nonphylogenetic component that reflects shared species between communities (analogous to Sørensen' s similarity metric) and a phylogenetic component that reflects the evolutionary relationships among nonshared species. Therefore, even if a species is not shared between two communities, it will increase the similarity of the two communities if it is phylogenetically related to species in the other community. We illustrate PCD with data on fish and aquatic macrophyte communities from 59 temperate lakes. Dissimilarity between fish communities associated with environmental differences between lakes often has a phylogenetic component, whereas this is not the case for macrophyte communities. With simulations, we then compare PCD with two other metrics of phylogenetic community similarity, II(ST) and UniFrac. Of the three metrics, PCD was best at identifying environmental drivers of community dissimilarity, showing lower variability and greater statistical power. Thus, PCD is a statistically powerful metric that separates the effects of environmental drivers on compositional versus phylogenetic components of community structure.

  8. Postcard from Independence, Mo.

    ERIC Educational Resources Information Center

    Archer, Jeff

    2004-01-01

    This article reports results showing that the Independence, Missori school district failed to meet almost every one of its improvement goals under the No Child Left Behind Act. The state accreditation system stresses improvement over past scores, while the federal law demands specified amounts of annual progress toward the ultimate goal of 100…

  9. Native American Independent Living.

    ERIC Educational Resources Information Center

    Clay, Julie Anna

    1992-01-01

    Examines features of independent living philosophy with regard to compatibility with Native American cultures, including definition or conceptualization of disability; self-advocacy; systems advocacy; peer counseling; and consumer control and involvement. Discusses an actualizing process as one method of resolving cultural conflicts and…

  10. Touchstones of Independence.

    ERIC Educational Resources Information Center

    Roha, Thomas Arden

    1999-01-01

    Foundations affiliated with public higher education institutions can avoid having to open records for public scrutiny, by having independent boards of directors, occupying leased office space or paying market value for university space, using only foundation personnel, retaining legal counsel, being forthcoming with information and use of public…

  11. Independent Video in Britain.

    ERIC Educational Resources Information Center

    Stewart, David

    Maintaining the status quo as well as the attitude toward cultural funding and development that it imposes on video are detrimental to the formation of a thriving video network, and also out of key with the present social and political situation in Britain. Independent video has some quite specific advantages as a medium for cultural production…

  12. Caring about Independent Lives

    ERIC Educational Resources Information Center

    Christensen, Karen

    2010-01-01

    With the rhetoric of independence, new cash for care systems were introduced in many developed welfare states at the end of the 20th century. These systems allow local authorities to pay people who are eligible for community care services directly, to enable them to employ their own careworkers. Despite the obvious importance of the careworker's…

  13. Superresolving multiphoton interferences with independent light sources.

    PubMed

    Oppel, S; Büttner, T; Kok, P; von Zanthier, J

    2012-12-07

    We propose to use multiphoton interferences from statistically independent light sources in combination with linear optical detection techniques to enhance the resolution in imaging. Experimental results with up to five independent thermal light sources confirm this approach to improve the spatial resolution. Since no involved quantum state preparation or detection is required, the experiment can be considered an extension of the Hanbury Brown-Twiss experiment for spatial intensity correlations of order N>2.

  14. Application of the principle of similarity fluid mechanics

    NASA Technical Reports Server (NTRS)

    Hendricks, R. C.; Sengers, J. V.

    1979-01-01

    Possible applications of the principle of similarity to fluid mechanics is described and illustrated. In correlating thermophysical properties of fluids, the similarity principle transcends the traditional corresponding states principle. In fluid mechanics the similarity principle is useful in correlating flow processes that can be modeled adequately with one independent variable (i.e., one-dimensional flows). In this paper we explore the concept of transforming the conservation equations by combining similarity principles for thermophysical properties with those for fluid flow. We illustrate the usefulness of the procedure by applying such a transformation to calculate two phase critical mass flow through a nozzle.

  15. [Samuel Hahnemann and the principle of similars].

    PubMed

    Schmidt, Josef M

    2010-01-01

    The principle of similars (treat likes by likes) is generally considered to be one of the pillars of the homeopathic doctrine established by Samuel Hahnemann (1755-1843). Nevertheless, its status and relevance with regard to the practice of homeopathy can be challenged by semantic, conceptual, and epistemological objections. 1. Contrary to its literal meaning, "similia similibus curentur" is commonly used in the sense of "all diseases should be treated by similar drug diseases", thus transgressing its original field of indication. 2. From 1796, when Hahnemann published his first definition of the principle of similars, he gradually raised his claims from merely suggesting a heuristic principle for finding new curative remedies to insisting on having discovered a law of nature and the only true way of healing, in 1807/1808. To substantiate his ambitious tenets, Hahnemann had to introduce a variety of theories which in turn were to become the main battleground in the ensuing controversy about homeopathy. 3. From the perspective of epistemology of science, science can never consist of a final set of absolute truths or the like but must rather be described as a continuous social process that retains a methodological cycle of abduction, deduction, and induction. From the perspective of theory of medicine, however, medicine is to be considered as a practical rather than a cognitive science in its own right. Its first concern ought to be the development of practical directions for treating patients, while the value of competing theories can only be judged from their usefulness in practice. Hence, even though Hahnemann's theories, including his conception of the principle of similars, may be untenable or outdated, the genuine method of homeopathic treatment he founded remains independent of and unaffected by criticism at the level of theory and concepts.

  16. Effect of similarity between patterns in associative memory

    NASA Astrophysics Data System (ADS)

    Wang, Sheng-Jun; Yang, Zhou

    2017-01-01

    We study the stability of patterns in Hopfield networks in which a part of memorized patterns are similar. The similarity between patterns impacts the stability of these patterns, but the stability of other independent patterns is only changed slightly. We show that the stability of patterns is affected in different ways by similarity. For networks storing a number of patterns, the similarity between patterns enhances the pattern stability. However, the stability of patterns can be weakened by the similarity when networks store fewer patterns, and the relation between the stability of patterns and similarity is nonmonotonic. We present a theoretical explanation of the effect of similarity on stability using signal-to-noise-ratio analysis.

  17. Global picture of self-similar and non-self-similar decay in Burgers turbulence.

    PubMed

    Noullez, Alain; Gurbatov, Sergey N; Aurell, Erik; Simdyankin, Sergey I

    2005-05-01

    This paper continues earlier investigations of the decay of Burgers turbulence in one dimension from Gaussian random initial conditions of the power-law spectral type E0(k) approximately |k|(n). Depending on the power n , different characteristic regions are distinguished. The main focus of this paper is to delineate the regions in wave number k and time t in which self-similarity can (and cannot) be observed, taking into account small-k and large-k cutoffs. The evolution of the spectrum can be inferred using physical arguments describing the competition between the initial spectrum and the new frequencies generated by the dynamics. For large wave numbers, we always have a k(-2) region, associated with the shocks. When n is less than 1, the large-scale part of the spectrum is preserved in time and the global evolution is self-similar, so that scaling arguments perfectly predict the behavior in time of the energy and integral scale. If n is larger than 2, the spectrum tends for long times to a universal scaling form independent of the initial conditions, with universal behavior k(2) at small wave numbers. In the interval 2similar, independent of n and with universal behavior k(2) at small wave number. When 1independent constant; second, a k(2) region at intermediate wave numbers; finally, the usual k(-2) region. In the remaining interval n<-3 the small-k cutoff dominates and n also plays no role. We find also (numerically) the subleading term approximately k(2) in the evolution of the spectrum in the interval -3

  18. Agent independent task planning

    NASA Technical Reports Server (NTRS)

    Davis, William S.

    1990-01-01

    Agent-Independent Planning is a technique that allows the construction of activity plans without regard to the agent that will perform them. Once generated, a plan is then validated and translated into instructions for a particular agent, whether a robot, crewmember, or software-based control system. Because Space Station Freedom (SSF) is planned for orbital operations for approximately thirty years, it will almost certainly experience numerous enhancements and upgrades, including upgrades in robotic manipulators. Agent-Independent Planning provides the capability to construct plans for SSF operations, independent of specific robotic systems, by combining techniques of object oriented modeling, nonlinear planning and temporal logic. Since a plan is validated using the physical and functional models of a particular agent, new robotic systems can be developed and integrated with existing operations in a robust manner. This technique also provides the capability to generate plans for crewmembers with varying skill levels, and later apply these same plans to more sophisticated robotic manipulators made available by evolutions in technology.

  19. International exploration by independent

    SciTech Connect

    Bertragne, R.G.

    1992-04-01

    Recent industry trends indicate that the smaller U.S. independents are looking at foreign exploration opportunities as one of the alternatives for growth in the new age of exploration. Foreign finding costs per barrel usually are accepted to be substantially lower than domestic costs because of the large reserve potential of international plays. To get involved in overseas exploration, however, requires the explorationist to adapt to different cultural, financial, legal, operational, and political conditions. Generally, foreign exploration proceeds at a slower pace than domestic exploration because concessions are granted by a country's government, or are explored in partnership with a national oil company. First, the explorationist must prepare a mid- to long-term strategy, tailored to the goals and the financial capabilities of the company; next, is an ongoing evaluation of quality prospects in various sedimentary basins, and careful planning and conduct of the operations. To successfully explore overseas also requires the presence of a minimum number of explorationists and engineers thoroughly familiar with the various exploratory and operational aspects of foreign work. Ideally, these team members will have had a considerable amount of on-site experience in various countries and climates. Independents best suited for foreign expansion are those who have been financially successful in domestic exploration. When properly approached, foreign exploration is well within the reach of smaller U.S. independents, and presents essentially no greater risk than domestic exploration; however, the reward can be much larger and can catapult the company into the 'big leagues.'

  20. International exploration by independents

    SciTech Connect

    Bertagne, R.G. )

    1991-03-01

    Recent industry trends indicate that the smaller US independents are looking at foreign exploration opportunities as one of the alternatives for growth in the new age of exploration. It is usually accepted that foreign finding costs per barrel are substantially lower than domestic because of the large reserve potential of international plays. To get involved overseas requires, however, an adaptation to different cultural, financial, legal, operational, and political conditions. Generally foreign exploration proceeds at a slower pace than domestic because concessions are granted by the government, or are explored in partnership with the national oil company. First, a mid- to long-term strategy, tailored to the goals and the financial capabilities of the company, must be prepared; it must be followed by an ongoing evaluation of quality prospects in various sedimentary basins, and a careful planning and conduct of the operations. To successfully explore overseas also requires the presence on the team of a minimum number of explorationists and engineers thoroughly familiar with the various exploratory and operational aspects of foreign work, having had a considerable amount of onsite experience in various geographical and climatic environments. Independents that are best suited for foreign expansion are those that have been financially successful domestically, and have a good discovery track record. When properly approached foreign exploration is well within the reach of smaller US independents and presents essentially no greater risk than domestic exploration; the reward, however, can be much larger and can catapult the company into the big leagues.

  1. Critical Branches and Lucky Loads in Control-Independence Architectures

    ERIC Educational Resources Information Center

    Malik, Kshitiz

    2009-01-01

    Branch mispredicts have a first-order impact on the performance of integer applications. Control Independence (CI) architectures aim to overlap the penalties of mispredicted branches with useful execution by spawning control-independent work as separate threads. Although control independent, such threads may consume register and memory values…

  2. A Student Guide for Independent Study Telecourses.

    ERIC Educational Resources Information Center

    Chavez, Mauro

    Designed for students enrolled in telecourses offered by Evergreen Valley College (EVC) on an independent study basis, this guide explains the role of telecourses in the college curriculum, differences and similarities between telecourses and traditional courses, procedures for contacting instructors, and the roles of the college and the student…

  3. Methods to Calculate Spectrum Similarity.

    PubMed

    Yilmaz, Şule; Vandermarliere, Elien; Martens, Lennart

    2017-01-01

    Scoring functions that assess spectrum similarity play a crucial role in many computational mass spectrometry algorithms. These functions are used to compare an experimentally acquired fragmentation (MS/MS) spectrum against two different types of target MS/MS spectra: either against a theoretical MS/MS spectrum derived from a peptide from a sequence database, or against another, previously acquired MS/MS spectrum. The former is typically encountered in database searching, while the latter is used in spectrum clustering and spectral library searching. The comparison between acquired versus theoretical MS/MS spectra is most commonly performed using cross-correlations or probability derived scoring functions, while the comparison of two acquired MS/MS spectra typically makes use of a normalized dot product, especially in spectrum library search algorithms. In addition to these scoring functions, Pearson's or Spearman's correlation coefficients, mean squared error, or median absolute deviation scores can also be used for the same purpose. Here, we describe and evaluate these scoring functions with regards to their ability to assess spectrum similarity for theoretical versus acquired, and acquired versus acquired spectra.

  4. Mechanisms for similarity based cooperation

    NASA Astrophysics Data System (ADS)

    Traulsen, A.

    2008-06-01

    Cooperation based on similarity has been discussed since Richard Dawkins introduced the term “green beard” effect. In these models, individuals cooperate based on an aribtrary signal (or tag) such as the famous green beard. Here, two different models for such tag based cooperation are analysed. As neutral drift is important in both models, a finite population framework is applied. The first model, which we term “cooperative tags” considers a situation in which groups of cooperators are formed by some joint signal. Defectors adopting the signal and exploiting the group can lead to a breakdown of cooperation. In this case, conditions are derived under which the average abundance of the more cooperative strategy exceeds 50%. The second model considers a situation in which individuals start defecting towards others that are not similar to them. This situation is termed “defective tags”. It is shown that in this case, individuals using tags to cooperate exclusively with their own kind dominate over unconditional cooperators.

  5. Similarity and scale in catchment storm response

    NASA Technical Reports Server (NTRS)

    Wood, Eric F.; Sivapalan, Murugesu; Beven, Keith

    1993-01-01

    Until recently, very little progress had been made in understanding the relationship between small-scale variability of topography, soil, and rainfalls and the storm response seen at the catchment scale. The work reviewed here represents the first attempt at a systematic theoretical framework for such understanding in the context of surface runoff generation by different processes. The parameterization of hydrological processes over a range of scales is examined, and the concept of the 'representative elementary area' (REA) is introduced. The REA is a fundamental scale for catchment modeling at which continuum assumptions can be applied for the spatially variable controls and parameters, and spatial patterns no longer have to be considered explicitly. The investigation of scale leads into the concept of hydrologic similarity in which the effects of the environmental controls on runoff generation and flood frequency response be investigated independently of catchment scale. The paper reviews the authors' initial results and hopefully will motivate others to also investigate the issues of hydrologic scale and similarity.

  6. Interneurons targeting similar layers receive synaptic inputs with similar kinetics.

    PubMed

    Cossart, Rosa; Petanjek, Zdravko; Dumitriu, Dani; Hirsch, June C; Ben-Ari, Yehezkel; Esclapez, Monique; Bernard, Christophe

    2006-01-01

    GABAergic interneurons play diverse and important roles in controlling neuronal network dynamics. They are characterized by an extreme heterogeneity morphologically, neurochemically, and physiologically, but a functionally relevant classification is still lacking. Present taxonomy is essentially based on their postsynaptic targets, but a physiological counterpart to this classification has not yet been determined. Using a quantitative analysis based on multidimensional clustering of morphological and physiological variables, we now demonstrate a strong correlation between the kinetics of glutamate and GABA miniature synaptic currents received by CA1 hippocampal interneurons and the laminar distribution of their axons: neurons that project to the same layer(s) receive synaptic inputs with similar kinetics distributions. In contrast, the kinetics distributions of GABAergic and glutamatergic synaptic events received by a given interneuron do not depend upon its somatic location or dendritic arborization. Although the mechanisms responsible for this unexpected observation are still unclear, our results suggest that interneurons may be programmed to receive synaptic currents with specific temporal dynamics depending on their targets and the local networks in which they operate.

  7. Phylogenetically related and ecologically similar carnivores harbour similar parasite assemblages.

    PubMed

    Huang, Shan; Bininda-Emonds, Olaf R P; Stephens, Patrick R; Gittleman, John L; Altizer, Sonia

    2014-05-01

    Most parasites infect multiple hosts, but what factors determine the range of hosts a given parasite can infect? Understanding the broad scale determinants of parasite distributions across host lineages is important for predicting pathogen emergence in new hosts and for estimating pathogen diversity in understudied host species. In this study, we used a new data set on 793 parasite species reported from free-ranging populations of 64 carnivore species to examine the factors that influence parasite sharing between host species. Our results showed that parasites are more commonly shared between phylogenetically related host species pairs. Additionally, host species with higher similarity in biological traits and greater geographic range overlap were also more likely to share parasite species. Of three measures of phylogenetic relatedness considered here, the number divergence events that separated host species pairs most strongly influenced the likelihood of parasite sharing. We also showed that viruses and helminths tend to infect carnivore hosts within more restricted phylogenetic ranges than expected by chance. Overall, our results underscore the importance of host evolutionary history in determining parasite host range, even when simultaneously considering other factors such as host ecology and geographic distribution.

  8. Path similarity skeleton graph matching.

    PubMed

    Bai, Xiang; Latecki, Longin Jan

    2008-07-01

    This paper presents a novel framework to for shape recognition based on object silhouettes. The main idea is to match skeleton graphs by comparing the shortest paths between skeleton endpoints. In contrast to typical tree or graph matching methods, we completely ignore the topological graph structure. Our approach is motivated by the fact that visually similar skeleton graphs may have completely different topological structures. The proposed comparison of shortest paths between endpoints of skeleton graphs yields correct matching results in such cases. The skeletons are pruned by contour partitioning with Discrete Curve Evolution, which implies that the endpoints of skeleton branches correspond to visual parts of the objects. The experimental results demonstrate that our method is able to produce correct results in the presence of articulations, stretching, and occlusion.

  9. APoc: large-scale identification of similar protein pockets

    PubMed Central

    Gao, Mu; Skolnick, Jeffrey

    2013-01-01

    Motivation: Most proteins interact with small-molecule ligands such as metabolites or drug compounds. Over the past several decades, many of these interactions have been captured in high-resolution atomic structures. From a geometric point of view, most interaction sites for grasping these small-molecule ligands, as revealed in these structures, form concave shapes, or ‘pockets’, on the protein’s surface. An efficient method for comparing these pockets could greatly assist the classification of ligand-binding sites, prediction of protein molecular function and design of novel drug compounds. Results: We introduce a computational method, APoc (Alignment of Pockets), for the large-scale, sequence order-independent, structural comparison of protein pockets. A scoring function, the Pocket Similarity Score (PS-score), is derived to measure the level of similarity between pockets. Statistical models are used to estimate the significance of the PS-score based on millions of comparisons of randomly related pockets. APoc is a general robust method that may be applied to pockets identified by various approaches, such as ligand-binding sites as observed in experimental complex structures, or predicted pockets identified by a pocket-detection method. Finally, we curate large benchmark datasets to evaluate the performance of APoc and present interesting examples to demonstrate the usefulness of the method. We also demonstrate that APoc has better performance than the geometric hashing-based method SiteEngine. Availability and implementation: The APoc software package including the source code is freely available at http://cssb.biology.gatech.edu/APoc. Contact: skolnick@gatech.edu Supplementary information: Supplementary data are available at Bioinformatics online. PMID:23335017

  10. Cary Potter on Independent Education

    ERIC Educational Resources Information Center

    Potter, Cary

    1978-01-01

    Cary Potter was President of the National Association of Independent Schools from 1964-1978. As he leaves NAIS he gives his views on education, on independence, on the independent school, on public responsibility, on choice in a free society, on educational change, and on the need for collective action by independent schools. (Author/RK)

  11. Myth or Truth: Independence Day.

    ERIC Educational Resources Information Center

    Gardner, Traci

    Most Americans think of the Fourth of July as Independence Day, but is it really the day the U.S. declared and celebrated independence? By exploring myths and truths surrounding Independence Day, this lesson asks students to think critically about commonly believed stories regarding the beginning of the Revolutionary War and the Independence Day…

  12. The Influences of Group and Independent General Practice on Patient Care

    PubMed Central

    Sellers, E. M.

    1965-01-01

    When the practices of four general practitioners, members of multispecialist-general practitioner salaried groups (clinic doctors) were compared with those of four independent general practitioners (solo practitioners), it was noted that: group practice patients had more office laboratory investigation and greater in-hospital consultation and referral. On the other hand, independent practitioners' patients seemed to receive more personal attention from the doctor, a fuller explanation of diagnosis and treatment during office hours, more drug samples and more laboratory investigation in hospital. Group and independent practices are similar with respect to the rate of follow-up visits, the volume of preventive medicine, the number of radiographs and special procedures, the total number of drugs ordered, and the in-hospital formal written consultation rate and office consultation rate. The similarities between two types of practice may be a result of the interaction of group and independent practice in the same community. It is concluded that the team approach to medical care is not incompatible with independent practice. PMID:14323656

  13. FRESCO: Referential compression of highly similar sequences.

    PubMed

    Wandelt, Sebastian; Leser, Ulf

    2013-01-01

    In many applications, sets of similar texts or sequences are of high importance. Prominent examples are revision histories of documents or genomic sequences. Modern high-throughput sequencing technologies are able to generate DNA sequences at an ever-increasing rate. In parallel to the decreasing experimental time and cost necessary to produce DNA sequences, computational requirements for analysis and storage of the sequences are steeply increasing. Compression is a key technology to deal with this challenge. Recently, referential compression schemes, storing only the differences between a to-be-compressed input and a known reference sequence, gained a lot of interest in this field. In this paper, we propose a general open-source framework to compress large amounts of biological sequence data called Framework for REferential Sequence COmpression (FRESCO). Our basic compression algorithm is shown to be one to two orders of magnitudes faster than comparable related work, while achieving similar compression ratios. We also propose several techniques to further increase compression ratios, while still retaining the advantage in speed: 1) selecting a good reference sequence; and 2) rewriting a reference sequence to allow for better compression. In addition,we propose a new way of further boosting the compression ratios by applying referential compression to already referentially compressed files (second-order compression). This technique allows for compression ratios way beyond state of the art, for instance,4,000:1 and higher for human genomes. We evaluate our algorithms on a large data set from three different species (more than 1,000 genomes, more than 3 TB) and on a collection of versions of Wikipedia pages. Our results show that real-time compression of highly similar sequences at high compression ratios is possible on modern hardware.

  14. Optimal dynamic discrimination of similar quantum systems

    NASA Astrophysics Data System (ADS)

    Li, Baiqing

    2005-07-01

    The techniques for identifying and separating similar molecules have always been very important to chemistry and other branches of science and engineering. Similar quantum systems share comparable Hamiltonians, so their eigenenergy levels, transition dipole moments, and therefore their ordinary observable properties are alike. Traditional analytical methods have mostly been restricted by working with the subtle differences in the physical and chemical properties of the similar species. Optimal Dynamic Discrimination (ODD) aims at magnifying the dissimilarity of the agents by actively controlling their quantum evolution, drawing on the extremely rich information embedded in their dynamics. ODD is developed based on the tremendous flexibility of Optimal Control Theory (OCT) and on the practical implementation of closed-loop learning control, which has become a more and more indispensable tool for controlling quantum processes. The ODD experimental paradigm is designed to combat a number of factors that are detrimental to the discrimination of similar molecules: laser pulse noise, signal detection errors, finite time resolution in the signals, and environmental decoherence effects. It utilizes either static signals or time series signal, the latter capable of providing more information. Simulations are performed in this dissertation progressing from the wave function to the density matrix formulation, in order to study the decoherence effects. Analysis of the results reveals the roles of the adverse factors, unravels the underlying mechanisms of ODD, and provides insights on laboratory implementation. ODD emphasizes the incorporation of algorithmic development and laboratory design, and seeks to bridge the gap between theoretical/computational chemistry and experimental chemistry, with the help from applied mathematics and computer science.

  15. Explosion Source Similarity Analysis via SVD

    NASA Astrophysics Data System (ADS)

    Yedlin, Matthew; Ben Horin, Yochai; Margrave, Gary

    2016-04-01

    An important seismological ingredient for establishing a regional seismic nuclear discriminant is the similarity analysis of a sequence of explosion sources. To investigate source similarity, we are fortunate to have access to a sequence of 1805 three-component recordings of quarry blasts, shot from March 2002 to January 2015. The centroid of these blasts has an estimated location 36.3E and 29.9N. All blasts were detonated by JPMC (Jordan Phosphate Mines Co.) All data were recorded at the Israeli NDC, HFRI, located at 30.03N and 35.03E. Data were first winnowed based on the distribution of maximum amplitudes in the neighborhood of the P-wave arrival. The winnowed data were then detrended using the algorithm of Cleveland et al (1990). The detrended data were bandpass filtered between .1 to 12 Hz using an eighth order Butterworth filter. Finally, data were sorted based on maximum trace amplitude. Two similarity analysis approaches were used. First, for each component, the entire suite of traces was decomposed into its eigenvector representation, by employing singular-valued decomposition (SVD). The data were then reconstructed using 10 percent of the singular values, with the resulting enhancement of the S-wave and surface wave arrivals. The results of this first method are then compared to the second analysis method based on the eigenface decomposition analysis of Turk and Pentland (1991). While both methods yield similar results in enhancement of data arrivals and reduction of data redundancy, more analysis is required to calibrate the recorded data to charge size, a quantity that was not available for the current study. References Cleveland, R. B., Cleveland, W. S., McRae, J. E., and Terpenning, I., Stl: A seasonal-trend decomposition procedure based on loess, Journal of Official Statistics, 6, No. 1, 3-73, 1990. Turk, M. and Pentland, A., Eigenfaces for recognition. Journal of cognitive neuroscience, 3(1), 71-86, 1991.

  16. Mixed-List Phonological Similarity Effects in Delayed Serial Recall

    ERIC Educational Resources Information Center

    Farrell, Simon

    2006-01-01

    Recent experiments have shown that placing dissimilar items on lists of phonologically similar items enhances accuracy of ordered recall of the dissimilar items [Farrell, S., & Lewandowsky, S. (2003). Dissimilar items benefit from phonological similarity in serial recall. "Journal of Experimental Psychology: Learning, Memory, and Cognition," 29,…

  17. Suffix Ordering and Morphological Processing

    ERIC Educational Resources Information Center

    Plag, Ingo; Baayen, Harald

    2009-01-01

    There is a long-standing debate about the principles constraining the combinatorial properties of suffixes. Hay 2002 and Hay & Plag 2004 proposed a model in which suffixes can be ordered along a hierarchy of processing complexity. We show that this model generalizes to a larger set of suffixes, and we provide independent evidence supporting the…

  18. Social values as arguments: similar is convincing

    PubMed Central

    Maio, Gregory R.; Hahn, Ulrike; Frost, John-Mark; Kuppens, Toon; Rehman, Nadia; Kamble, Shanmukh

    2014-01-01

    Politicians, philosophers, and rhetors engage in co-value argumentation: appealing to one value in order to support another value (e.g., “equality leads to freedom”). Across four experiments in the United Kingdom and India, we found that the psychological relatedness of values affects the persuasiveness of the arguments that bind them. Experiment 1 found that participants were more persuaded by arguments citing values that fulfilled similar motives than by arguments citing opposing values. Experiments 2 and 3 replicated this result using a wider variety of values, while finding that the effect is stronger among people higher in need for cognition and that the effect is mediated by the greater plausibility of co-value arguments that link motivationally compatible values. Experiment 4 extended the effect to real-world arguments taken from political propaganda and replicated the mediating effect of argument plausibility. The findings highlight the importance of value relatedness in argument persuasiveness. PMID:25147529

  19. Effect of Number and Similarity on Children's Plural Comprehension

    ERIC Educational Resources Information Center

    Lanter, Jennifer A.; Basche, Richard A.

    2014-01-01

    During the first years of language development, toddlers coordinate multiple cues in order to acquire the plural form. The aim of this study was to manipulate object similarity as well as set size in order to determine whether these variables impact children's comprehension of plurality. One-hundred-and-fifty children ranging in age from 22 to 36…

  20. Similarity Rules for Scaling Solar Sail Systems

    NASA Technical Reports Server (NTRS)

    Canfield, Stephen L.; Peddieson, John; Garbe, Gregory

    2010-01-01

    Future science missions will require solar sails on the order of 200 square meters (or larger). However, ground demonstrations and flight demonstrations must be conducted at significantly smaller sizes, due to limitations of ground-based facilities and cost and availability of flight opportunities. For this reason, the ability to understand the process of scalability, as it applies to solar sail system models and test data, is crucial to the advancement of this technology. This paper will approach the problem of scaling in solar sail models by developing a set of scaling laws or similarity criteria that will provide constraints in the sail design process. These scaling laws establish functional relationships between design parameters of a prototype and model sail that are created at different geometric sizes. This work is applied to a specific solar sail configuration and results in three (four) similarity criteria for static (dynamic) sail models. Further, it is demonstrated that even in the context of unique sail material requirements and gravitational load of earth-bound experiments, it is possible to develop appropriate scaled sail experiments. In the longer term, these scaling laws can be used in the design of scaled experimental tests for solar sails and in analyzing the results from such tests.

  1. Similarities between methamphetamine toxicity and proteasome inhibition.

    PubMed

    Fornai, F; Lenzi, P; Gesi, M; Ferrucci, M; Lazzeri, G; Capobianco, L; de Blasi, A; Battaglia, G; Nicoletti, F; Ruggieri, S; Paparelli, A

    2004-10-01

    The monoamine neurotoxin methamphetamine (METH) is commonly used as an experimental model for Parkinson's disease (PD). In fact, METH-induced striatal dopamine (DA) loss is accompanied by damage to striatal nerve endings arising from the substantia nigra. On the other hand, PD is characterized by neuronal inclusions within nigral DA neurons. These inclusions contain alpha-synuclein, ubiquitin, and various components of a metabolic pathway named the ubiquitin-proteasome (UP) system, while mutation of genes coding for various components of the UP system is responsible for inherited forms of PD. In this presentation we demonstrate for the first time the occurrence of neuronal inclusions in vivo in the nigrostriatal system of the mouse following administration of METH. We analyzed, in vivo and in vitro, the shape and the fine structure of these neuronal bodies by using transmission electron microscopy. Immunocytochemical investigation showed that these METH-induced cytosolic inclusions stain for ubiquitin, alpha-synuclein, and UP-related molecules, thus sharing similar components with Lewy bodies occurring in PD, with an emphasis on enzymes belonging to the UP system. In line with this, blockade of this multicatalytic pathway by the selective inhibitor epoxomycin produced cell inclusions with similar features. Moreover, using a multifaceted pharmacological approach, we could demonstrate the need for endogenous DA in order to form neuronal inclusions.

  2. 23. Historic American Buildings Survey. 'Fort Independence,' 1801, by John ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    23. Historic American Buildings Survey. 'Fort Independence,' 1801, by John Foncin. French artillerist and military engineer and designer of Fort McHenry. This plan includes alternate arrangements for grouping of the inner buildings 'Fig. 2' being similar to Fort McHenry. - Fort McHenry National Monument & Historic Shrine, East Fort Avenue at Whetstone Point, Baltimore, Independent City, MD

  3. Voxel similarity measures for automated image registration

    NASA Astrophysics Data System (ADS)

    Hill, Derek L.; Studholme, Colin; Hawkes, David J.

    1994-09-01

    We present the concept of the feature space sequence: 2D distributions of voxel features of two images generated at registration and a sequence of misregistrations. We provide an explanation of the structure seen in these images. Feature space sequences have been generated for a pair of MR image volumes identical apart from the addition of Gaussian noise to one, MR image volumes with and without Gadolinium enhancement, MR and PET-FDG image volumes and MR and CT image volumes, all of the head. The structure seen in the feature space sequences was used to devise two new measures of similarity which in turn were used to produce plots of cost versus misregistration for the 6 degrees of freedom of rigid body motion. One of these, the third order moment of the feature space histogram, was used to register the MR image volumes with and without Gadolinium enhancement. These techniques have the potential for registration accuracy to within a small fraction of a voxel or resolution element and therefore interpolation errors in image transformation can be the dominant source of error in subtracted images. We present a method for removing these errors using sinc interpolation and show how interpolation errors can be reduced by over two orders of magnitude.

  4. Mass versus molar doses, similarities and differences.

    PubMed

    Chmielewska, A; Lamparczyk, H

    2008-11-01

    Generally, they are two systems expressing the amounts of active substance in a given drug product, i.e. mass and molar dose. Currently, the dose system based on the mass is widely used in which doses are expressed in grams or milligrams. On the other hand, the molar dose system is in direct relation to the number of molecules. Hence, the objective of this work was to compare both systems in order to find their advantages and disadvantages. Active substances belonging to the groups of antibiotics, nootropic agents, beta-blockers, vitamins, GABA-analog, COX-2 inhibitors, calcium channel antagonists, benzodiazepine receptor agonists, lipid-modifying agents (fibrates), non-steroidal anti-inflammatory drugs (profens), estrogens, neuroleptics, analgesics and benzodiazepines were considered. Moreover, products containing two active substances were also taken into account. These are mixtures of hydrochlorothiazide with active substances influencing the renin-angiotensin system and combined oral contraceptives. For each active substance, belonging to the groups mentioned above molar doses were calculated from mass doses and molar mass. Hence, groups of drugs with a single active substance, drugs with similar pharmacological activities, pharmaceutical alternatives, and drugs with a single active ingredient manufactured in different doses were compared in order to find which dose system describes more adequately differences between and within the groups mentioned above. Comparisons were supported by a number of equations, which theoretically justify the data, and relationships derived from calculations.

  5. Protein similarity networks reveal relationships among sequence, structure, and function within the Cupin superfamily.

    PubMed

    Uberto, Richard; Moomaw, Ellen W

    2013-01-01

    The cupin superfamily is extremely diverse and includes catalytically inactive seed storage proteins, sugar-binding metal-independent epimerases, and metal-dependent enzymes possessing dioxygenase, decarboxylase, and other activities. Although numerous proteins of this superfamily have been structurally characterized, the functions of many of them have not been experimentally determined. We report the first use of protein similarity networks (PSNs) to visualize trends of sequence and structure in order to make functional inferences in this remarkably diverse superfamily. PSNs provide a way to visualize relatedness of structure and sequence among a given set of proteins. Structure- and sequence-based clustering of cupin members reflects functional clustering. Networks based only on cupin domains and networks based on the whole proteins provide complementary information. Domain-clustering supports phylogenetic conclusions that the N- and C-terminal domains of bicupin proteins evolved independently. Interestingly, although many functionally similar enzymatic cupin members bind the same active site metal ion, the structure and sequence clustering does not correlate with the identity of the bound metal. It is anticipated that the application of PSNs to this superfamily will inform experimental work and influence the functional annotation of databases.

  6. Abel's Theorem Simplifies Reduction of Order

    ERIC Educational Resources Information Center

    Green, William R.

    2011-01-01

    We give an alternative to the standard method of reduction or order, in which one uses one solution of a homogeneous, linear, second order differential equation to find a second, linearly independent solution. Our method, based on Abel's Theorem, is shorter, less complex and extends to higher order equations.

  7. Beyond Literal Similarity. Technical Report No. 105.

    ERIC Educational Resources Information Center

    Ortony, Andrew

    Hitherto, theories of similarity have restricted themselves to judgments of what might be called literal similarity. A central thesis of this paper is that a complete account of similarity needs also to be sensitive to nonliteralness, or metaphoricity, an aspect of similarity statements that is most evident in similes, but that actually underlies…

  8. Independent molecular basis of convergent highland adaptation in maize

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Convergent evolution is the independent evolution of similar traits in different species or lineages of the same species; this often is a result of adaptation to similar environments, a process referred to as convergent adaptation. We investigate here the molecular basis of convergent adaptation in ...

  9. Independent Learning Models: A Comparison.

    ERIC Educational Resources Information Center

    Wickett, R. E. Y.

    Five models of independent learning are suitable for use in adult education programs. The common factor is a facilitator who works in some way with the student in the learning process. They display different characteristics, including the extent of independence in relation to content and/or process. Nondirective tutorial instruction and learning…

  10. DDE Transposases: Structural Similarity and Diversity

    PubMed Central

    Nesmelova, Irina V.; Hackett, Perry B.

    2010-01-01

    DNA transposons are mobile DNA elements that can move from one DNA molecule to another and thereby deliver genetic information into human chromosomes in order to confer a new function or replace a defective gene. This process requires a transposase enzyme. During transposition DD[E/D]-transposases undergo a series of conformational changes. We summarize the structural features of DD[E/D]-transposases for which three-dimensional structures are available and that relate to transposases, which are being developed for use in mammalian cells. Similar to other members of the polynucleotidyl transferase family, the catalytic domains of DD[E/D]-transposases share a common feature: an RNase H-like fold that draws three catalytically active residues, the DDE motif, into close proximity. Beyond this fold, the structures of catalytic domains vary considerably, and the DD[E/D]-transposases display marked structural diversity within their DNA-binding domains. Yet despite such structural variability, essentially the same end result is achieved. PMID:20615441

  11. Manipulation of pure spin current in ferromagnetic metals independent of magnetization

    NASA Astrophysics Data System (ADS)

    Tian, Dai; Li, Yufan; Qu, D.; Huang, S. Y.; Jin, Xiaofeng; Chien, C. L.

    2016-07-01

    Upon the injection of a pure spin current, a ferromagnet, similar to a nonmagnetic metal, also exhibits inverse spin Hall effect (ISHE). We show in Co/Cu/YIG, where the thin Cu layer allows transmission of spin current from YIG into Co but decouples the two ferromagnets, that the interaction between ISHE and ferromagnetic ordering in Co can be unambiguously investigated. By switching on and off the pure spin current contribution, we demonstrate that the ISHE in Co is independent of the direction of the Co magnetization, which clearly suggests that the ISHE in Co is dominated not by the extrinsic impurity scatterings, but from the intrinsic origin.

  12. Magnetic order in ?

    NASA Astrophysics Data System (ADS)

    Crook, M. R.; Coles, B. R.; Ritter, C.; Cywinski, R.

    1996-10-01

    Neutron powder diffraction has been used to study the evolution of magnetic order with increasing Zr substitution in the C14 Laves phase compounds 0953-8984/8/41/022/img8. For compounds with x = 0.3 and x = 0.4 we find a simple antiferromagnetic structure, similar to that reported for isostructural 0953-8984/8/41/022/img9. In this structure the Fe moments at the 6h sites are aligned along the c-axis, ferromagnetically coupled within the a - b plane, with adjacent planes antiferromagnetically coupled. This spin structure results in a cancellation of the molecular field at the interplanar 2a sites, and the Fe atoms at these sites carry no ordered moment. The neutron diffraction measurements on 0953-8984/8/41/022/img10 compounds in the composition range 0953-8984/8/41/022/img11 provide evidence of a low-temperature spin-canted structure in which the antiferromagnetic structure described above is modified by the appearance of a basal-plane ferromagnetic component which in turn leads to a small ordered Fe moment at the 2a site. The temperature dependence of the staggered magnetization in the antiferromagnetic state of the x = 0.4 compounds is found to closely follow the form 0953-8984/8/41/022/img12, as predicted for weak itinerant antiferromagnets by SCR spin-fluctuation theory.

  13. Reconstructing propagation networks with temporal similarity

    PubMed Central

    Liao, Hao; Zeng, An

    2015-01-01

    Node similarity significantly contributes to the growth of real networks. In this paper, based on the observed epidemic spreading results we apply the node similarity metrics to reconstruct the underlying networks hosting the propagation. We find that the reconstruction accuracy of the similarity metrics is strongly influenced by the infection rate of the spreading process. Moreover, there is a range of infection rate in which the reconstruction accuracy of some similarity metrics drops nearly to zero. To improve the similarity-based reconstruction method, we propose a temporal similarity metric which takes into account the time information of the spreading. The reconstruction results are remarkably improved with the new method. PMID:26086198

  14. Reconstructing propagation networks with temporal similarity.

    PubMed

    Liao, Hao; Zeng, An

    2015-06-18

    Node similarity significantly contributes to the growth of real networks. In this paper, based on the observed epidemic spreading results we apply the node similarity metrics to reconstruct the underlying networks hosting the propagation. We find that the reconstruction accuracy of the similarity metrics is strongly influenced by the infection rate of the spreading process. Moreover, there is a range of infection rate in which the reconstruction accuracy of some similarity metrics drops nearly to zero. To improve the similarity-based reconstruction method, we propose a temporal similarity metric which takes into account the time information of the spreading. The reconstruction results are remarkably improved with the new method.

  15. From Sensory Signals to Modality-Independent Conceptual Representations: A Probabilistic Language of Thought Approach.

    PubMed

    Erdogan, Goker; Yildirim, Ilker; Jacobs, Robert A

    2015-11-01

    People learn modality-independent, conceptual representations from modality-specific sensory signals. Here, we hypothesize that any system that accomplishes this feat will include three components: a representational language for characterizing modality-independent representations, a set of sensory-specific forward models for mapping from modality-independent representations to sensory signals, and an inference algorithm for inverting forward models-that is, an algorithm for using sensory signals to infer modality-independent representations. To evaluate this hypothesis, we instantiate it in the form of a computational model that learns object shape representations from visual and/or haptic signals. The model uses a probabilistic grammar to characterize modality-independent representations of object shape, uses a computer graphics toolkit and a human hand simulator to map from object representations to visual and haptic features, respectively, and uses a Bayesian inference algorithm to infer modality-independent object representations from visual and/or haptic signals. Simulation results show that the model infers identical object representations when an object is viewed, grasped, or both. That is, the model's percepts are modality invariant. We also report the results of an experiment in which different subjects rated the similarity of pairs of objects in different sensory conditions, and show that the model provides a very accurate account of subjects' ratings. Conceptually, this research significantly contributes to our understanding of modality invariance, an important type of perceptual constancy, by demonstrating how modality-independent representations can be acquired and used. Methodologically, it provides an important contribution to cognitive modeling, particularly an emerging probabilistic language-of-thought approach, by showing how symbolic and statistical approaches can be combined in order to understand aspects of human perception.

  16. From Sensory Signals to Modality-Independent Conceptual Representations: A Probabilistic Language of Thought Approach

    PubMed Central

    Erdogan, Goker; Yildirim, Ilker; Jacobs, Robert A.

    2015-01-01

    People learn modality-independent, conceptual representations from modality-specific sensory signals. Here, we hypothesize that any system that accomplishes this feat will include three components: a representational language for characterizing modality-independent representations, a set of sensory-specific forward models for mapping from modality-independent representations to sensory signals, and an inference algorithm for inverting forward models—that is, an algorithm for using sensory signals to infer modality-independent representations. To evaluate this hypothesis, we instantiate it in the form of a computational model that learns object shape representations from visual and/or haptic signals. The model uses a probabilistic grammar to characterize modality-independent representations of object shape, uses a computer graphics toolkit and a human hand simulator to map from object representations to visual and haptic features, respectively, and uses a Bayesian inference algorithm to infer modality-independent object representations from visual and/or haptic signals. Simulation results show that the model infers identical object representations when an object is viewed, grasped, or both. That is, the model’s percepts are modality invariant. We also report the results of an experiment in which different subjects rated the similarity of pairs of objects in different sensory conditions, and show that the model provides a very accurate account of subjects’ ratings. Conceptually, this research significantly contributes to our understanding of modality invariance, an important type of perceptual constancy, by demonstrating how modality-independent representations can be acquired and used. Methodologically, it provides an important contribution to cognitive modeling, particularly an emerging probabilistic language-of-thought approach, by showing how symbolic and statistical approaches can be combined in order to understand aspects of human perception. PMID

  17. Transition-Independent Decentralized Markov Decision Processes

    NASA Technical Reports Server (NTRS)

    Becker, Raphen; Silberstein, Shlomo; Lesser, Victor; Goldman, Claudia V.; Morris, Robert (Technical Monitor)

    2003-01-01

    There has been substantial progress with formal models for sequential decision making by individual agents using the Markov decision process (MDP). However, similar treatment of multi-agent systems is lacking. A recent complexity result, showing that solving decentralized MDPs is NEXP-hard, provides a partial explanation. To overcome this complexity barrier, we identify a general class of transition-independent decentralized MDPs that is widely applicable. The class consists of independent collaborating agents that are tied up by a global reward function that depends on both of their histories. We present a novel algorithm for solving this class of problems and examine its properties. The result is the first effective technique to solve optimally a class of decentralized MDPs. This lays the foundation for further work in this area on both exact and approximate solutions.

  18. Rude awakening. [overseas development of independent power

    SciTech Connect

    Goodwin, L.M. )

    1993-07-15

    Developers will find language isn't the only thing that's different overseas. The nation's dramatic success in allowing competition in electric power generation and the subsequent growth in non-utility power plant development has encouraged other countries to try their hand at stimulating growth in their internal electric markets. This has coincided with a general trend toward privatizing what were once governmental functions, a process encouraged by international agencies such as the World Bank. Because U.S. developers have acquired significant experience developing independent power projects during the 15 years since the Public Utility Regulatory Policies Act (PURPA) was passed, they have been among the most aggressive participants in the early stages of international independent power development. Developers who try to transplant their domestic experience directly to foreign markets may be in for a rude awakening, however. Despite apparent similarities, significant differences exist between energy project development here and in international markets.

  19. Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity.

    PubMed

    Chen, Xing; Yan, Chenggang Clarence; Luo, Cai; Ji, Wen; Zhang, Yongdong; Dai, Qionghai

    2015-06-10

    Increasing evidence has indicated that plenty of lncRNAs play important roles in many critical biological processes. Developing powerful computational models to construct lncRNA functional similarity network based on heterogeneous biological datasets is one of the most important and popular topics in the fields of both lncRNAs and complex diseases. Functional similarity network construction could benefit the model development for both lncRNA function inference and lncRNA-disease association identification. However, little effort has been attempted to analysis and calculate lncRNA functional similarity on a large scale. In this study, based on the assumption that functionally similar lncRNAs tend to be associated with similar diseases, we developed two novel lncRNA functional similarity calculation models (LNCSIM). LNCSIM was evaluated by introducing similarity scores into the model of Laplacian Regularized Least Squares for LncRNA-Disease Association (LRLSLDA) for lncRNA-disease association prediction. As a result, new predictive models improved the performance of LRLSLDA in the leave-one-out cross validation of various known lncRNA-disease associations datasets. Furthermore, some of the predictive results for colorectal cancer and lung cancer were verified by independent biological experimental studies. It is anticipated that LNCSIM could be a useful and important biological tool for human disease diagnosis, treatment, and prevention.

  20. Boosting medical diagnostics by pooling independent judgments

    PubMed Central

    Kurvers, Ralf H. J. M.; Herzog, Stefan M.; Hertwig, Ralph; Krause, Jens; Carney, Patricia A.; Bogart, Andy; Argenziano, Giuseppe; Zalaudek, Iris; Wolf, Max

    2016-01-01

    Collective intelligence refers to the ability of groups to outperform individual decision makers when solving complex cognitive problems. Despite its potential to revolutionize decision making in a wide range of domains, including medical, economic, and political decision making, at present, little is known about the conditions underlying collective intelligence in real-world contexts. We here focus on two key areas of medical diagnostics, breast and skin cancer detection. Using a simulation study that draws on large real-world datasets, involving more than 140 doctors making more than 20,000 diagnoses, we investigate when combining the independent judgments of multiple doctors outperforms the best doctor in a group. We find that similarity in diagnostic accuracy is a key condition for collective intelligence: Aggregating the independent judgments of doctors outperforms the best doctor in a group whenever the diagnostic accuracy of doctors is relatively similar, but not when doctors’ diagnostic accuracy differs too much. This intriguingly simple result is highly robust and holds across different group sizes, performance levels of the best doctor, and collective intelligence rules. The enabling role of similarity, in turn, is explained by its systematic effects on the number of correct and incorrect decisions of the best doctor that are overruled by the collective. By identifying a key factor underlying collective intelligence in two important real-world contexts, our findings pave the way for innovative and more effective approaches to complex real-world decision making, and to the scientific analyses of those approaches. PMID:27432950

  1. Tachyon search speeds up retrieval of similar sequences by several orders of magnitude

    PubMed Central

    Tan, Joshua; Kuchibhatla, Durga; Sirota, Fernanda L.; Sherman, Westley A.; Gattermayer, Tobias; Kwoh, Chia Yee; Eisenhaber, Frank; Schneider, Georg; Maurer-Stroh, Sebastian

    2012-01-01

    Summary: The usage of current sequence search tools becomes increasingly slower as databases of protein sequences continue to grow exponentially. Tachyon, a new algorithm that identifies closely related protein sequences ~200 times faster than standard BLAST, circumvents this limitation with a reduced database and oligopeptide matching heuristic. Availability and implementation: The tool is publicly accessible as a webserver at http://tachyon.bii.a-star.edu.sg and can also be accessed programmatically through SOAP. Contact: sebastianms@bii.a-star.edu.sg Supplementary information: Supplementary data are available at the Bioinformatics online. PMID:22531216

  2. Stability of linear systems in second-order form based on structure preserving similarity transformations

    SciTech Connect

    Stoustrup, Jakob; Pommer, Christian; Kliem, Wolfhard

    2015-10-31

    This paper deals with two stability aspects of linear systems of the form I ¨ x +B˙ x +Cx = 0 given by the triple (I;B;C). A general transformation scheme is given for a structure and Jordan form preserving transformation of the triple. We investigate how a system can be transformed by suitable choices of the transformation parameters into a new system (I;B1;C1) with a symmetrizable matrix C1. This procedure facilitates stability investigations. We also consider systems with a Hamiltonian spectrum which discloses marginal stability after a Jordan form preserving transformation.

  3. A Distance and Angle Similarity Measure Method.

    ERIC Educational Resources Information Center

    Zhang, Jin; Korfhage, Robert R.

    1999-01-01

    Discusses similarity measures that are used in information retrieval to improve precision and recall ratios and presents a combined vector-based distance and angle measure to make similarity measurement more scientific and accurate. Suggests directions for future research. (LRW)

  4. Structure Modulates Similarity-Based Interference in Sluicing: An Eye Tracking study

    PubMed Central

    Harris, Jesse A.

    2015-01-01

    In cue-based content-addressable approaches to memory, a target and its competitors are retrieved in parallel from memory via a fast, associative cue-matching procedure under a severely limited focus of attention. Such a parallel matching procedure could in principle ignore the serial order or hierarchical structure characteristic of linguistic relations. I present an eye tracking while reading experiment that investigates whether the sentential position of a potential antecedent modulates the strength of similarity-based interference, a well-studied effect in which increased similarity in features between a target and its competitors results in slower and less accurate retrieval overall. The manipulation trades on an independently established Locality bias in sluiced structures to associate a wh-remnant (which ones) in clausal ellipsis with the most local correlate (some wines), as in The tourists enjoyed some wines, but I don't know which ones. The findings generally support cue-based parsing models of sentence processing that are subject to similarity-based interference in retrieval, and provide additional support to the growing body of evidence that retrieval is sensitive to both the structural position of a target antecedent and its competitors, and the specificity or diagnosticity of retrieval cues. PMID:26733893

  5. Exact Score Distribution Computation for Similarity Searches in Ontologies

    NASA Astrophysics Data System (ADS)

    Schulz, Marcel H.; Köhler, Sebastian; Bauer, Sebastian; Vingron, Martin; Robinson, Peter N.

    Semantic similarity searches in ontologies are an important component of many bioinformatic algorithms, e.g., protein function prediction with the Gene Ontology. In this paper we consider the exact computation of score distributions for similarity searches in ontologies, and introduce a simple null hypothesis which can be used to compute a P-value for the statistical significance of similarity scores. We concentrate on measures based on Resnik’s definition of ontological similarity. A new algorithm is proposed that collapses subgraphs of the ontology graph and thereby allows fast score distribution computation. The new algorithm is several orders of magnitude faster than the naive approach, as we demonstrate by computing score distributions for similarity searches in the Human Phenotype Ontology.

  6. Chandra Independently Determines Hubble Constant

    NASA Astrophysics Data System (ADS)

    2006-08-01

    A critically important number that specifies the expansion rate of the Universe, the so-called Hubble constant, has been independently determined using NASA's Chandra X-ray Observatory. This new value matches recent measurements using other methods and extends their validity to greater distances, thus allowing astronomers to probe earlier epochs in the evolution of the Universe. "The reason this result is so significant is that we need the Hubble constant to tell us the size of the Universe, its age, and how much matter it contains," said Max Bonamente from the University of Alabama in Huntsville and NASA's Marshall Space Flight Center (MSFC) in Huntsville, Ala., lead author on the paper describing the results. "Astronomers absolutely need to trust this number because we use it for countless calculations." Illustration of Sunyaev-Zeldovich Effect Illustration of Sunyaev-Zeldovich Effect The Hubble constant is calculated by measuring the speed at which objects are moving away from us and dividing by their distance. Most of the previous attempts to determine the Hubble constant have involved using a multi-step, or distance ladder, approach in which the distance to nearby galaxies is used as the basis for determining greater distances. The most common approach has been to use a well-studied type of pulsating star known as a Cepheid variable, in conjunction with more distant supernovae to trace distances across the Universe. Scientists using this method and observations from the Hubble Space Telescope were able to measure the Hubble constant to within 10%. However, only independent checks would give them the confidence they desired, considering that much of our understanding of the Universe hangs in the balance. Chandra X-ray Image of MACS J1149.5+223 Chandra X-ray Image of MACS J1149.5+223 By combining X-ray data from Chandra with radio observations of galaxy clusters, the team determined the distances to 38 galaxy clusters ranging from 1.4 billion to 9.3 billion

  7. Chromatic induction and contrast masking: similar models, different goals?

    NASA Astrophysics Data System (ADS)

    Jiménez, Sandra; Otazu, Xavier; Laparra, Valero; Malo, Jesús

    2013-03-01

    Normalization of signals coming from linear sensors is an ubiquitous mechanism of neural adaptation.1 Local interaction between sensors tuned to a particular feature at certain spatial position and neighbor sensors explains a wide range of psychophysical facts including (1) masking of spatial patterns, (2) non-linearities of motion sensors, (3) adaptation of color perception, (4) brightness and chromatic induction, and (5) image quality assessment. Although the above models have formal and qualitative similarities, it does not necessarily mean that the mechanisms involved are pursuing the same statistical goal. For instance, in the case of chromatic mechanisms (disregarding spatial information), different parameters in the normalization give rise to optimal discrimination or adaptation, and different non-linearities may give rise to error minimization or component independence. In the case of spatial sensors (disregarding color information), a number of studies have pointed out the benefits of masking in statistical independence terms. However, such statistical analysis has not been performed for spatio-chromatic induction models where chromatic perception depends on spatial configuration. In this work we investigate whether successful spatio-chromatic induction models,6 increase component independence similarly as previously reported for masking models. Mutual information analysis suggests that seeking an efficient chromatic representation may explain the prevalence of induction effects in spatially simple images.

  8. Thematic Relations Affect Similarity via Commonalities

    ERIC Educational Resources Information Center

    Golonka, Sabrina; Estes, Zachary

    2009-01-01

    Thematic relations are an important source of perceived similarity. For instance, the "rowing" theme of boats and oars increases their perceived similarity. The mechanism of this effect, however, has not been specified previously. The authors investigated whether thematic relations affect similarity by increasing commonalities or by…

  9. Sequence independent amplification of DNA

    DOEpatents

    Bohlander, Stefan K.

    1998-01-01

    The present invention is a rapid sequence-independent amplification procedure (SIA). Even minute amounts of DNA from various sources can be amplified independent of any sequence requirements of the DNA or any a priori knowledge of any sequence characteristics of the DNA to be amplified. This method allows, for example the sequence independent amplification of microdissected chromosomal material and the reliable construction of high quality fluorescent in situ hybridization (FISH) probes from YACs or from other sources. These probes can be used to localize YACs on metaphase chromosomes but also--with high efficiency--in interphase nuclei.

  10. Sequence independent amplification of DNA

    DOEpatents

    Bohlander, S.K.

    1998-03-24

    The present invention is a rapid sequence-independent amplification procedure (SIA). Even minute amounts of DNA from various sources can be amplified independent of any sequence requirements of the DNA or any a priori knowledge of any sequence characteristics of the DNA to be amplified. This method allows, for example, the sequence independent amplification of microdissected chromosomal material and the reliable construction of high quality fluorescent in situ hybridization (FISH) probes from YACs or from other sources. These probes can be used to localize YACs on metaphase chromosomes but also--with high efficiency--in interphase nuclei. 25 figs.

  11. Asteroid clusters similar to asteroid pairs

    NASA Astrophysics Data System (ADS)

    Pravec, Petr; Vokrouhlicky, David; Fatka, Petr; Kusnirák, Peter; Hornoch, Kamil; Galád, Adrián

    2016-10-01

    We study five small, tight and young clusters of asteroids. They are placed around following largest (primary) bodies: (11842) Kap'bos, (14627) Emilkowalski, (16598) 1992 YC2, (21509) Lucascavin and (39991) 1998 HR37. Each cluster has 2-4 secondaries that are tightly clustered around the primary body, with distance in the 5-dimensional space of mean orbital elements mostly within 10 m/s, and always < 23 m/s. Backward orbital integrations indicate that they formed between 105 and 106 yr ago. In the P1-q space, where P1 is the primary's spin period and q = Σ Mj/M1 is the total secondary-to-primary mass ratio, the clusters lie in the same range as asteroid pairs formed by rotational fission. We have extended the model of a proto-system separation after rotational fission by Pravec et al. (2010) for application to systems with more than one secondary and found a perfect match for the five tight clusters. We find these clusters to be similar to asteroid pairs and we suggest that they are "extended pairs", having 2-4 escaped secondaries rather than just one secondary as in the case of an asteroid pair. We compare them to six young mini-families (1270) Datura, (2384) Schulhof, (3152) Jones, (6825) Irvine, (10321) Rampo and (20674) 1999 VT1. These mini-families have similar ages, but they have a higher number of members and/or they show a significantly larger spread in the mean orbital elements (dmean on an order of tens m/s) than the five tight clusters. In the P1-q space, all but one of the mini-families lie in the same range as asteroid pairs and the tight clusters; the exception is the mini-family of (3152) Jones which appears to be a collisional family. A possibility that the other five mini-families were also formed by rotational fission as we suggest for the tight clusters ("extended asteroid pairs") is being explored.Reference:Pravec, P., et al. Formation of asteroid pairs by rotational fission. Nature 466, 1085-1088.

  12. Independent Schools: Landscape and Learnings.

    ERIC Educational Resources Information Center

    Oates, William A.

    1981-01-01

    Examines American independent schools (parochial, southern segregated, and private institutions) in terms of their funding, expenditures, changing enrollment patterns, teacher-student ratios, and societal functions. Journal available from Daedalus Subscription Department, 1172 Commonwealth Ave., Boston, MA 02132. (AM)

  13. Technology for Independent Living: Sourcebook.

    ERIC Educational Resources Information Center

    Enders, Alexandra, Ed.

    This sourcebook provides information for the practical implementation of independent living technology in the everyday rehabilitation process. "Information Services and Resources" lists databases, clearinghouses, networks, research and development programs, toll-free telephone numbers, consumer protection caveats, selected publications, and…

  14. Experimental interference of independent photons.

    PubMed

    Kaltenbaek, Rainer; Blauensteiner, Bibiane; Zukowski, Marek; Aspelmeyer, Markus; Zeilinger, Anton

    2006-06-23

    Interference of photons emerging from independent sources is essential for modern quantum-information processing schemes, above all quantum repeaters and linear-optics quantum computers. We report an observation of nonclassical interference of two single photons originating from two independent, separated sources, which were actively synchronized with a rms timing jitter of 260 fs. The resulting (two-photon) interference visibility was (83+/-4)%.

  15. Independence test for sparse data

    NASA Astrophysics Data System (ADS)

    García, J. E.; González-López, V. A.

    2016-06-01

    In this paper a new non-parametric independence test is presented. García and González-López (2014) [1] introduced the LIS test for the hypothesis of independence between two continuous random variables, the test proposed in this work is a generalization of the LIS test. The new test does not require the assumption of continuity for the random variables, it test is applied to two datasets and also compared with the Pearson's Chi-squared test.

  16. A toolbox for representational similarity analysis.

    PubMed

    Nili, Hamed; Wingfield, Cai; Walther, Alexander; Su, Li; Marslen-Wilson, William; Kriegeskorte, Nikolaus

    2014-04-01

    Neuronal population codes are increasingly being investigated with multivariate pattern-information analyses. A key challenge is to use measured brain-activity patterns to test computational models of brain information processing. One approach to this problem is representational similarity analysis (RSA), which characterizes a representation in a brain or computational model by the distance matrix of the response patterns elicited by a set of stimuli. The representational distance matrix encapsulates what distinctions between stimuli are emphasized and what distinctions are de-emphasized in the representation. A model is tested by comparing the representational distance matrix it predicts to that of a measured brain region. RSA also enables us to compare representations between stages of processing within a given brain or model, between brain and behavioral data, and between individuals and species. Here, we introduce a Matlab toolbox for RSA. The toolbox supports an analysis approach that is simultaneously data- and hypothesis-driven. It is designed to help integrate a wide range of computational models into the analysis of multichannel brain-activity measurements as provided by modern functional imaging and neuronal recording techniques. Tools for visualization and inference enable the user to relate sets of models to sets of brain regions and to statistically test and compare the models using nonparametric inference methods. The toolbox supports searchlight-based RSA, to continuously map a measured brain volume in search of a neuronal population code with a specific geometry. Finally, we introduce the linear-discriminant t value as a measure of representational discriminability that bridges the gap between linear decoding analyses and RSA. In order to demonstrate the capabilities of the toolbox, we apply it to both simulated and real fMRI data. The key functions are equally applicable to other modalities of brain-activity measurement. The toolbox is freely

  17. Humans and Insects Decide in Similar Ways

    PubMed Central

    Louâpre, Philippe; van Alphen, Jacques J. M.; Pierre, Jean-Sébastien

    2010-01-01

    Behavioral ecologists assume that animals use a motivational mechanism for decisions such as action selection and time allocation, allowing the maximization of their fitness. They consider both the proximate and ultimate causes of behavior in order to understand this type of decision-making in animals. Experimental psychologists and neuroeconomists also study how agents make decisions but they consider the proximate causes of the behavior. In the case of patch-leaving, motivation-based decision-making remains simple speculation. In contrast to other animals, human beings can assess and evaluate their own motivation by an introspection process. It is then possible to study the declared motivation of humans during decision-making and discuss the mechanism used as well as its evolutionary significance. In this study, we combine both the proximate and ultimate causes of behavior for a better understanding of the human decision-making process. We show for the first time ever that human subjects use a motivational mechanism similar to small insects such as parasitoids [1] and bumblebees [2] to decide when to leave a patch. This result is relevant for behavioral ecologists as it supports the biological realism of this mechanism. Humans seem to use a motivational mechanism of decision making known to be adaptive to a heterogeneously distributed resource. As hypothesized by Hutchinson et al. [3] and Wilke and Todd [4], our results are consistent with the evolutionary shaping of decision making because hominoids were hunters and gatherers on food patches for more than two million years. We discuss the plausibility of a neural basis for the motivation mechanism highlighted here, bridging the gap between behavioral ecology and neuroeconomy. Thus, both the motivational mechanism observed here and the neuroeconomy findings are most likely adaptations that were selected for during ancestral times. PMID:21170378

  18. Order, chaos and nuclear dynamics: An introduction

    SciTech Connect

    Swiatecki, W.J.

    1990-08-01

    This is an introductory lecture illustrating by simple examples the anticipated effect on collective nuclear dynamics of a transition from order to chaos in the motions of nucleons inside an idealized nucleus. The destruction of order is paralleled by a transition from a rubber-like to a honey-like behaviour of the independent-particle nuclear model. 10 refs., 6 figs.

  19. Similarity increases altruistic punishment in humans.

    PubMed

    Mussweiler, Thomas; Ockenfels, Axel

    2013-11-26

    Humans are attracted to similar others. As a consequence, social networks are homogeneous in sociodemographic, intrapersonal, and other characteristics--a principle called homophily. Despite abundant evidence showing the importance of interpersonal similarity and homophily for human relationships, their behavioral correlates and cognitive foundations are poorly understood. Here, we show that perceived similarity substantially increases altruistic punishment, a key mechanism underlying human cooperation. We induced (dis)similarity perception by manipulating basic cognitive mechanisms in an economic cooperation game that included a punishment phase. We found that similarity-focused participants were more willing to punish others' uncooperative behavior. This influence of similarity is not explained by group identity, which has the opposite effect on altruistic punishment. Our findings demonstrate that pure similarity promotes reciprocity in ways known to encourage cooperation. At the same time, the increased willingness to punish norm violations among similarity-focused participants provides a rationale for why similar people are more likely to build stable social relationships. Finally, our findings show that altruistic punishment is differentially involved in encouraging cooperation under pure similarity vs. in-group conditions.

  20. Surface-Based Protein Binding Pocket Similarity

    PubMed Central

    Spitzer, Russell; Cleves, Ann E.; Jain, Ajay N.

    2011-01-01

    Protein similarity comparisons may be made on a local or global basis and may consider sequence information or differing levels of structural information. We present a local 3D method that compares protein binding site surfaces in full atomic detail. The approach is based on the morphological similarity method which has been widely applied for global comparison of small molecules. We apply the method to all-by-all comparisons two sets of human protein kinases, a very diverse set of ATP-bound proteins from multiple species, and three heterogeneous benchmark protein binding site data sets. Cases of disagreement between sequence-based similarity and binding site similarity yield informative examples. Where sequence similarity is very low, high pocket similarity can reliably identify important binding motifs. Where sequence similarity is very high, significant differences in pocket similarity are related to ligand binding specificity and similarity. Local protein binding pocket similarity provides qualitatively complementary information to other approaches, and it can yield quantitative information in support of functional annotation. PMID:21769944

  1. Hybrid control approach for seismic coupling of two similar adjacent structures

    NASA Astrophysics Data System (ADS)

    Park, Kwan-Soon; Ok, Seung-Yong

    2015-08-01

    This study describes an optimal hybrid control approach of two similar adjacent buildings for seismic performance improvement, for which the passive dampers are used as link members between the two parallel buildings and the active control devices are installed as tendon-type devices between two successive floors in the buildings. Throughout this configuration, the passive coupling dampers modulate the relative responses between the two buildings and the active control devices modulate the inter-story responses of each building. In order to achieve global optimal control performance, genetic algorithm is employed to perform an integrated design approach for the system of buildings and hybrid control devices. Through the optimization process, the passive and active devices are optimally distributed along the floors and, simultaneously, their damping capacities and active controllers are configured in accordance with the distribution. The proposed approach is demonstrated in comparison with typical active control system which consists of two independent active systems without any connections between two buildings, each being optimal for one particular building. The numerical simulation results for a system of 20-story and 16-story buildings reveal that the proposed system can guarantee the competent control performance over the typical independent active system with less control forces and powers. As a result, it is proved that the proposed approach enables the simultaneous optimization of the control performance and the control cost.

  2. Similarity relations for anisotropic scattering in absorbing media

    NASA Astrophysics Data System (ADS)

    Graaff, Reindert; Aarnoudse, Jan G.; de Mul, Frits F.; Jentink, Henk W.

    1993-02-01

    The validity of the similarity parameter (Sigma) 's equalsV (Sigma) s (1 - g), the reduced scattering coefficient, where g is the average cosine of the scattering phase function is investigated. Attenuation coefficients (alpha) and diffusion patterns are obtained from solutions of the transport equation for isotropic scattering and Rayleigh-Gans scattering, applied to infinite media. Similarity is studied for the attenuation coefficient (alpha) , as well as for the Kubelka-Munk absorption and backscattering coefficients in the positive and negative directions, and for predictions of the internal reflection at interfaces. Similarity between solutions of the Boltzmann equation for highly forward scattering and isotropic scattering (g equals 0) exist only when (Sigma) a << (Sigma) s (1 - g). However, because similarity between results, both with g > 0.9, is independent of the value of the absorption coefficient, it is advantageous to simulate highly forward scattering media like biological tissues with g > 0.9, e.g., by Monte Carlo simulations, instead of using isotropic scattering or diffusion theory. Monte Carlo simulations on slabs confirm the deviations from the diffusion approximation and show the behavior near boundaries. Application of similarity may save calculation time in Monte Carlo simulations, because simulation with a lower value for g will increase the mean free path.

  3. Notions of similarity for systems biology models.

    PubMed

    Henkel, Ron; Hoehndorf, Robert; Kacprowski, Tim; Knüpfer, Christian; Liebermeister, Wolfram; Waltemath, Dagmar

    2016-10-14

    Systems biology models are rapidly increasing in complexity, size and numbers. When building large models, researchers rely on software tools for the retrieval, comparison, combination and merging of models, as well as for version control. These tools need to be able to quantify the differences and similarities between computational models. However, depending on the specific application, the notion of 'similarity' may greatly vary. A general notion of model similarity, applicable to various types of models, is still missing. Here we survey existing methods for the comparison of models, introduce quantitative measures for model similarity, and discuss potential applications of combined similarity measures. To frame model comparison as a general problem, we describe a theoretical approach to defining and computing similarities based on a combination of different model aspects. The six aspects that we define as potentially relevant for similarity are underlying encoding, references to biological entities, quantitative behaviour, qualitative behaviour, mathematical equations and parameters and network structure. We argue that future similarity measures will benefit from combining these model aspects in flexible, problem-specific ways to mimic users' intuition about model similarity, and to support complex model searches in databases.

  4. Similarity effects in visual working memory.

    PubMed

    Jiang, Yuhong V; Lee, Hyejin J; Asaad, Anthony; Remington, Roger

    2016-04-01

    Perceptual similarity is an important property of multiple stimuli. Its computation supports a wide range of cognitive functions, including reasoning, categorization, and memory recognition. It is important, therefore, to determine why previous research has found conflicting effects of inter-item similarity on visual working memory. Studies reporting a similarity advantage have used simple stimuli whose similarity varied along a featural continuum. Studies reporting a similarity disadvantage have used complex stimuli from either a single or multiple categories. To elucidate stimulus conditions for similarity effects in visual working memory, we tested memory for complex stimuli (faces) whose similarity varied along a morph continuum. Participants encoded 3 morphs generated from a single face identity in the similar condition, or 3 morphs generated from different face identities in the dissimilar condition. After a brief delay, a test face appeared at one of the encoding locations for participants to make a same/different judgment. Two experiments showed that similarity enhanced memory accuracy without changing the response criterion. These findings support previous computational models that incorporate featural variance as a component of working memory load. They delineate limitations of models that emphasize cortical resources or response decisions.

  5. New opportunities seen for independents

    SciTech Connect

    Adams, G.A. )

    1990-10-22

    The collapse of gas and oil prices in the mid-1980s significantly reduced the number of independent exploration companies. At the same time, a fundamental shift occurred among major oil companies as they allocated their exploration budgets toward international operations and made major production purchases. Several large independents also embraced a philosophy of budget supplementation through joint venture partnership arrangements. This has created a unique and unusual window of opportunity for the smaller independents (defined for this article as exploration and production companies with a market value of less than $1 billion) to access the extensive and high quality domestic prospect inventories of the major and large independent oil and gas companies and to participate in the search for large reserve targets on attractive joint venture terms. Participation in these types of joint ventures, in conjunction with internally generated plays selected through the use of today's advanced technology (computer-enhanced, high-resolution seismic; horizontal drilling; etc.) and increasing process for oil and natural gas, presents the domestic exploration-oriented independent with an attractive money-making opportunity for the 1990s.

  6. Time ordering in atomic collisions

    NASA Astrophysics Data System (ADS)

    McGuire, J. H.; Godunov, A. L.; Shakov, Kh Kh; Kaplan, L.; Burin, A.; Uskov, D.

    2007-06-01

    Time ordering constrains interactions to occur in increasing (or decreasing) order. This places a constraint on the time evolution of the system and can lead to correlations in time of different particles in a few/many body system. Unlike overall time reversal, time ordering is not a conserved symmetry of the atomic system. A number of examples of observable effects of time ordering are presented. A convenient way to describe time ordering is to define the limit of no time ordering by replacing the instantaneous interaction by its time average. This is similar to the way in which spatial correlation is defined. Like spatial correlation, time ordering is usually formulated in the interaction representation. The effects of time ordering can differ in different representations. In energy space, conjugate to time space, time ordering is imposed as the i ɛ term in the Greens' function that corresponds to an initial condition (usually incoming plane waves and outgoing scattered waves). This permits off-energy-shell (energy non- conserving) fluctuations during the collision consistent with the Uncertainty Principle.

  7. Independent Active Contraction of Extraocular Muscle Compartments

    PubMed Central

    Shin, Andrew; Yoo, Lawrence; Demer, Joseph L.

    2015-01-01

    Purpose. Intramuscular innervation of horizontal rectus extraocular muscle (EOMs) is segregated into superior and inferior (transverse) compartments, whereas all EOMs are also divided into global (GL) and orbital (OL) layers with scleral and pulley insertions, respectively. Mechanical independence between both types of compartments has been demonstrated during passive tensile loading. We examined coupling between EOM compartments during active, ex vivo contraction. Methods. Fresh bovine EOMs were removed, and one compartment of each was coated with hydrophobic petrolatum. Contraction of the uncoated compartment was induced by immersion in a solution of 50 mM CaCl2 at 38°C labeled with sodium fluorescein dye, whereas tensions in both compartments were monitored by strain gauges. Control experiments omitted petrolatum so that the entire EOM contracted. After physiological experiments, EOMs were sectioned transversely to demonstrate specificity of CaCl2 permeation by yellow fluorescence dye excited by blue light. Results. In control experiments without petrolatum, both transverse and GL and OL compartments contracted similarly. Selective compartmental omission of petrolatum caused markedly independent compartmental contraction whether measured at the GL or the OL insertions or for transverse compartments at the scleral insertion. Although some CaCl2 spread occurred, mean (±SD) tension in the coated compartments averaged only 10.5 ± 3.3% and 6.0 ± 1.5% in GL/OL and transverse compartments, respectively relative to uncoated compartments. Fluorescein penetration confirmed selective CaCl2 permeation. Conclusions. These data confirm passive tensile findings of mechanical independence of EOM compartments and extend results to active contraction. EOMs behave actively as if composed of mechanically independent parallel fiber bundles having different insertional targets, consistent with the active pulley and transverse compartmental hypotheses. PMID:25503460

  8. Proving universal common ancestry with similar sequences

    PubMed Central

    Martins, Leonardo de Oliveira; Posada, David

    2013-01-01

    Douglas Theobald recently developed an interesting test putatively capable of quantifying the evidence for a Universal Common Ancestry uniting the three domains of life (Eukarya, Archaea and Bacteria) against hypotheses of Independent Origins for some of these domains. We review here his model, in particular in relation to the treatment of Horizontal Gene Transfer (HGT) and to the quality of sequence alignment. PMID:23814665

  9. Stability of similarity measurements for bipartite networks

    NASA Astrophysics Data System (ADS)

    Liu, Jian-Guo; Hou, Lei; Pan, Xue; Guo, Qiang; Zhou, Tao

    2016-01-01

    Similarity is a fundamental measure in network analyses and machine learning algorithms, with wide applications ranging from personalized recommendation to socio-economic dynamics. We argue that an effective similarity measurement should guarantee the stability even under some information loss. With six bipartite networks, we investigate the stabilities of fifteen similarity measurements by comparing the similarity matrixes of two data samples which are randomly divided from original data sets. Results show that, the fifteen measurements can be well classified into three clusters according to their stabilities, and measurements in the same cluster have similar mathematical definitions. In addition, we develop a top-n-stability method for personalized recommendation, and find that the unstable similarities would recommend false information to users, and the performance of recommendation would be largely improved by using stable similarity measurements. This work provides a novel dimension to analyze and evaluate similarity measurements, which can further find applications in link prediction, personalized recommendation, clustering algorithms, community detection and so on.

  10. Stability of similarity measurements for bipartite networks

    PubMed Central

    Liu, Jian-Guo; Hou, Lei; Pan, Xue; Guo, Qiang; Zhou, Tao

    2016-01-01

    Similarity is a fundamental measure in network analyses and machine learning algorithms, with wide applications ranging from personalized recommendation to socio-economic dynamics. We argue that an effective similarity measurement should guarantee the stability even under some information loss. With six bipartite networks, we investigate the stabilities of fifteen similarity measurements by comparing the similarity matrixes of two data samples which are randomly divided from original data sets. Results show that, the fifteen measurements can be well classified into three clusters according to their stabilities, and measurements in the same cluster have similar mathematical definitions. In addition, we develop a top-n-stability method for personalized recommendation, and find that the unstable similarities would recommend false information to users, and the performance of recommendation would be largely improved by using stable similarity measurements. This work provides a novel dimension to analyze and evaluate similarity measurements, which can further find applications in link prediction, personalized recommendation, clustering algorithms, community detection and so on. PMID:26725688

  11. Documents Similarity Measurement Using Field Association Terms.

    ERIC Educational Resources Information Center

    Atlam, El-Sayed; Fuketa, M.; Morita, K.; Aoe, Jun-ichi

    2003-01-01

    Discussion of text analysis and information retrieval and measurement of document similarity focuses on a new text manipulation system called FA (field association)-Sim that is useful for retrieving information in large heterogeneous texts and for recognizing content similarity in text excerpts. Discusses recall and precision, automatic indexing…

  12. Stability of similarity measurements for bipartite networks.

    PubMed

    Liu, Jian-Guo; Hou, Lei; Pan, Xue; Guo, Qiang; Zhou, Tao

    2016-01-04

    Similarity is a fundamental measure in network analyses and machine learning algorithms, with wide applications ranging from personalized recommendation to socio-economic dynamics. We argue that an effective similarity measurement should guarantee the stability even under some information loss. With six bipartite networks, we investigate the stabilities of fifteen similarity measurements by comparing the similarity matrixes of two data samples which are randomly divided from original data sets. Results show that, the fifteen measurements can be well classified into three clusters according to their stabilities, and measurements in the same cluster have similar mathematical definitions. In addition, we develop a top-n-stability method for personalized recommendation, and find that the unstable similarities would recommend false information to users, and the performance of recommendation would be largely improved by using stable similarity measurements. This work provides a novel dimension to analyze and evaluate similarity measurements, which can further find applications in link prediction, personalized recommendation, clustering algorithms, community detection and so on.

  13. Guaranteed classification via regularized similarity learning.

    PubMed

    Guo, Zheng-Chu; Ying, Yiming

    2014-03-01

    Learning an appropriate (dis)similarity function from the available data is a central problem in machine learning, since the success of many machine learning algorithms critically depends on the choice of a similarity function to compare examples. Despite many approaches to similarity metric learning that have been proposed, there has been little theoretical study on the links between similarity metric learning and the classification performance of the resulting classifier. In this letter, we propose a regularized similarity learning formulation associated with general matrix norms and establish their generalization bounds. We show that the generalization error of the resulting linear classifier can be bounded by the derived generalization bound of similarity learning. This shows that a good generalization of the learned similarity function guarantees a good classification of the resulting linear classifier. Our results extend and improve those obtained by Bellet, Habrard, and Sebban (2012). Due to the techniques dependent on the notion of uniform stability (Bousquet & Elisseeff, 2002), the bound obtained there holds true only for the Frobenius matrix-norm regularization. Our techniques using the Rademacher complexity (Bartlett & Mendelson, 2002) and its related Khinchin-type inequality enable us to establish bounds for regularized similarity learning formulations associated with general matrix norms, including sparse L1-norm and mixed (2,1)-norm.

  14. Structure Mapping in Analogy and Similarity.

    ERIC Educational Resources Information Center

    Gentner, Dedre; Markman, Arthur B.

    1997-01-01

    It is suggested that both similarity and analogy involve a process of structural alignment and mapping. The structure mapping process is described as it has been worked out for analogy, and this view is then extended to similarity and used to generate new predictions. (SLD)

  15. Perceived Similarity, Proactive Adjustment, and Organizational Socialization

    ERIC Educational Resources Information Center

    Kammeyer-Mueller, John D.; Livingston, Beth A.; Liao, Hui

    2011-01-01

    The present study explores how perceived demographic and attitudinal similarity can influence proactive behavior among organizational newcomers. We propose that newcomers who perceive themselves as similar to their co-workers will be more willing to seek new information or build relationships, which in turn will lead to better long-term…

  16. Marking Student Programs Using Graph Similarity

    ERIC Educational Resources Information Center

    Naude, Kevin A.; Greyling, Jean H.; Vogts, Dieter

    2010-01-01

    We present a novel approach to the automated marking of student programming assignments. Our technique quantifies the structural similarity between unmarked student submissions and marked solutions, and is the basis by which we assign marks. This is accomplished through an efficient novel graph similarity measure ("AssignSim"). Our experiments…

  17. Mining Diagnostic Assessment Data for Concept Similarity

    ERIC Educational Resources Information Center

    Madhyastha, Tara; Hunt, Earl

    2009-01-01

    This paper introduces a method for mining multiple-choice assessment data for similarity of the concepts represented by the multiple choice responses. The resulting similarity matrix can be used to visualize the distance between concepts in a lower-dimensional space. This gives an instructor a visualization of the relative difficulty of concepts…

  18. Investigation of psychophysical similarity measures for selection of similar images in the diagnosis of clustered microcalcifications on mammograms.

    PubMed

    Muramatsu, Chisako; Li, Qiang; Schmidt, Robert; Shiraishi, Junji; Doi, Kunio

    2008-12-01

    The presentation of images with lesions of known pathology that are similar to an unknown lesion may be helpful to radiologists in the diagnosis of challenging cases for improving the diagnostic accuracy and also for reducing variation among different radiologists. The authors have been developing a computerized scheme for automatically selecting similar images with clustered microcalcifications on mammograms from a large database. For similar images to be useful, they must be similar from the point of view of the diagnosing radiologists. In order to select such images, subjective similarity ratings were obtained for a number of pairs of clustered microcalcifications by breast radiologists for establishment of a "gold standard" of image similarity, and the gold standard was employed for determination and evaluation of the selection of similar images. The images used in this study were obtained from the Digital Database for Screening Mammography developed by the University of South Florida. The subjective similarity ratings for 300 pairs of images with clustered microcalcifications were determined by ten breast radiologists. The authors determined a number of image features which represent the characteristics of clustered microcalcifications that radiologists would use in their diagnosis. For determination of objective similarity measures, an artificial neural network (ANN) was employed. The ANN was trained with the average subjective similarity ratings as teacher and selected image features as input data. The ANN was trained to learn the relationship between the image features and the radiologists' similarity ratings; therefore, once the training was completed, the ANN was able to determine the similarity, called a psychophysical similarity measure, which was expected to be close to radiologists' impressions, for an unknown pair of clustered microcalcifications. By use of a leave-one-out test method, the best combination of features was selected. The correlation

  19. Investigation of psychophysical similarity measures for selection of similar images in the diagnosis of clustered microcalcifications on mammograms

    SciTech Connect

    Muramatsu, Chisako; Li Qiang; Schmidt, Robert; Shiraishi, Junji; Doi, Kunio

    2008-12-15

    The presentation of images with lesions of known pathology that are similar to an unknown lesion may be helpful to radiologists in the diagnosis of challenging cases for improving the diagnostic accuracy and also for reducing variation among different radiologists. The authors have been developing a computerized scheme for automatically selecting similar images with clustered microcalcifications on mammograms from a large database. For similar images to be useful, they must be similar from the point of view of the diagnosing radiologists. In order to select such images, subjective similarity ratings were obtained for a number of pairs of clustered microcalcifications by breast radiologists for establishment of a ''gold standard'' of image similarity, and the gold standard was employed for determination and evaluation of the selection of similar images. The images used in this study were obtained from the Digital Database for Screening Mammography developed by the University of South Florida. The subjective similarity ratings for 300 pairs of images with clustered microcalcifications were determined by ten breast radiologists. The authors determined a number of image features which represent the characteristics of clustered microcalcifications that radiologists would use in their diagnosis. For determination of objective similarity measures, an artificial neural network (ANN) was employed. The ANN was trained with the average subjective similarity ratings as teacher and selected image features as input data. The ANN was trained to learn the relationship between the image features and the radiologists' similarity ratings; therefore, once the training was completed, the ANN was able to determine the similarity, called a psychophysical similarity measure, which was expected to be close to radiologists' impressions, for an unknown pair of clustered microcalcifications. By use of a leave-one-out test method, the best combination of features was selected. The correlation

  20. Similarity analysis of compressor tip clearance flow structure

    NASA Technical Reports Server (NTRS)

    Chen, G. T.; Greitzer, E. M.; Tan, C. S.; Marble, F. E.

    1991-01-01

    A new approach is presented for analyzing compressor tip clearance flow. The basic idea is that the clearance velocity field can be (approximately) decomposed into independent throughflow and crossflow, since chordwise pressure gradients are much smaller than normal pressure gradients in the clearance region. As in the slender body approximation in external aerodynamics, this description implies that the three-dimensional steady clearance flow can be viewed as a two-dimensional, unsteady flow. Using this approach, a similarity scaling for the crossflow in the clearance region is developed and a generalized description of the clearance vortex is derived. Calculations based on the similarity scaling agree well with a wide range of experimental data in regard to flow features such as crossflow velocity field, static pressure field, and tip clearance vortex trajectory.

  1. Drug Promiscuity in PDB: Protein Binding Site Similarity Is Key

    PubMed Central

    Schroeder, Michael

    2013-01-01

    Drug repositioning applies established drugs to new disease indications with increasing success. A pre-requisite for drug repurposing is drug promiscuity (polypharmacology) – a drug’s ability to bind to several targets. There is a long standing debate on the reasons for drug promiscuity. Based on large compound screens, hydrophobicity and molecular weight have been suggested as key reasons. However, the results are sometimes contradictory and leave space for further analysis. Protein structures offer a structural dimension to explain promiscuity: Can a drug bind multiple targets because the drug is flexible or because the targets are structurally similar or even share similar binding sites? We present a systematic study of drug promiscuity based on structural data of PDB target proteins with a set of 164 promiscuous drugs. We show that there is no correlation between the degree of promiscuity and ligand properties such as hydrophobicity or molecular weight but a weak correlation to conformational flexibility. However, we do find a correlation between promiscuity and structural similarity as well as binding site similarity of protein targets. In particular, 71% of the drugs have at least two targets with similar binding sites. In order to overcome issues in detection of remotely similar binding sites, we employed a score for binding site similarity: LigandRMSD measures the similarity of the aligned ligands and uncovers remote local similarities in proteins. It can be applied to arbitrary structural binding site alignments. Three representative examples, namely the anti-cancer drug methotrexate, the natural product quercetin and the anti-diabetic drug acarbose are discussed in detail. Our findings suggest that global structural and binding site similarity play a more important role to explain the observed drug promiscuity in the PDB than physicochemical drug properties like hydrophobicity or molecular weight. Additionally, we find ligand flexibility to have a

  2. The Independent Technical Analysis Process

    SciTech Connect

    Duberstein, Corey A.; Ham, Kenneth D.; Dauble, Dennis D.; Johnson, Gary E.

    2007-04-13

    The Bonneville Power Administration (BPA) contracted with the Pacific Northwest National Laboratory (PNNL) to provide technical analytical support for system-wide fish passage information (BPA Project No. 2006-010-00). The goal of this project was to produce rigorous technical analysis products using independent analysts and anonymous peer reviewers. In the past, regional parties have interacted with a single entity, the Fish Passage Center to access the data, analyses, and coordination related to fish passage. This project provided an independent technical source for non-routine fish passage analyses while allowing routine support functions to be performed by other well-qualified entities.

  3. Ultra-accurate collaborative information filtering via directed user similarity

    NASA Astrophysics Data System (ADS)

    Guo, Q.; Song, W.-J.; Liu, J.-G.

    2014-07-01

    A key challenge of the collaborative filtering (CF) information filtering is how to obtain the reliable and accurate results with the help of peers' recommendation. Since the similarities from small-degree users to large-degree users would be larger than the ones in opposite direction, the large-degree users' selections are recommended extensively by the traditional second-order CF algorithms. By considering the users' similarity direction and the second-order correlations to depress the influence of mainstream preferences, we present the directed second-order CF (HDCF) algorithm specifically to address the challenge of accuracy and diversity of the CF algorithm. The numerical results for two benchmark data sets, MovieLens and Netflix, show that the accuracy of the new algorithm outperforms the state-of-the-art CF algorithms. Comparing with the CF algorithm based on random walks proposed by Liu et al. (Int. J. Mod. Phys. C, 20 (2009) 285) the average ranking score could reach 0.0767 and 0.0402, which is enhanced by 27.3% and 19.1% for MovieLens and Netflix, respectively. In addition, the diversity, precision and recall are also enhanced greatly. Without relying on any context-specific information, tuning the similarity direction of CF algorithms could obtain accurate and diverse recommendations. This work suggests that the user similarity direction is an important factor to improve the personalized recommendation performance.

  4. Shape similarity analysis of regions of interest in medical images

    NASA Astrophysics Data System (ADS)

    Wang, Qiang; Charisi, Amalia; Latecki, Longin Jan; Gee, James; Megalooikonomou, Vasilis

    2010-03-01

    In this work, we introduce a new representation technique of 2D contour shapes and a sequence similarity measure to characterize 2D regions of interest in medical images. First, we define a distance function on contour points in order to map the shape of a given contour to a sequence of real numbers. Thus, the computation of shape similarity is reduced to the matching of the obtained sequences. Since both a query and a target sequence may be noisy, i.e., contain some outlier elements, it is desirable to exclude the outliers in order to obtain a robust matching performance. For the computation of shape similarity, we propose the use of an algorithm which performs elastic matching of two sequences. The contribution of our approach is that, unlike previous works that require images to be warped according to a template image for measuring their similarity, it obviates this need, therefore it can estimate image similarity for any type of medical image in a fast and efficient manner. To demonstrate our method's applicability, we analyzed a brain image dataset consisting of corpus callosum shapes, and we investigated the structural differences between children with chromosome 22q11.2 deletion syndrome and controls. Our findings indicate that our method is quite effective and it can be easily applied on medical diagnosis in all cases of which shape difference is an important clue.

  5. The baryonic self similarity of dark matter

    SciTech Connect

    Alard, C.

    2014-06-20

    The cosmological simulations indicates that dark matter halos have specific self-similar properties. However, the halo similarity is affected by the baryonic feedback. By using momentum-driven winds as a model to represent the baryon feedback, an equilibrium condition is derived which directly implies the emergence of a new type of similarity. The new self-similar solution has constant acceleration at a reference radius for both dark matter and baryons. This model receives strong support from the observations of galaxies. The new self-similar properties imply that the total acceleration at larger distances is scale-free, the transition between the dark matter and baryons dominated regime occurs at a constant acceleration, and the maximum amplitude of the velocity curve at larger distances is proportional to M {sup 1/4}. These results demonstrate that this self-similar model is consistent with the basics of modified Newtonian dynamics (MOND) phenomenology. In agreement with the observations, the coincidence between the self-similar model and MOND breaks at the scale of clusters of galaxies. Some numerical experiments show that the behavior of the density near the origin is closely approximated by a Einasto profile.

  6. Measure of Node Similarity in Multilayer Networks

    PubMed Central

    Mollgaard, Anders; Zettler, Ingo; Dammeyer, Jesper; Jensen, Mogens H.; Lehmann, Sune; Mathiesen, Joachim

    2016-01-01

    The weight of links in a network is often related to the similarity of the nodes. Here, we introduce a simple tunable measure for analysing the similarity of nodes across different link weights. In particular, we use the measure to analyze homophily in a group of 659 freshman students at a large university. Our analysis is based on data obtained using smartphones equipped with custom data collection software, complemented by questionnaire-based data. The network of social contacts is represented as a weighted multilayer network constructed from different channels of telecommunication as well as data on face-to-face contacts. We find that even strongly connected individuals are not more similar with respect to basic personality traits than randomly chosen pairs of individuals. In contrast, several socio-demographics variables have a significant degree of similarity. We further observe that similarity might be present in one layer of the multilayer network and simultaneously be absent in the other layers. For a variable such as gender, our measure reveals a transition from similarity between nodes connected with links of relatively low weight to dis-similarity for the nodes connected by the strongest links. We finally analyze the overlap between layers in the network for different levels of acquaintanceships. PMID:27300084

  7. Gait Signal Analysis with Similarity Measure

    PubMed Central

    Shin, Seungsoo

    2014-01-01

    Human gait decision was carried out with the help of similarity measure design. Gait signal was selected through hardware implementation including all in one sensor, control unit, and notebook with connector. Each gait signal was considered as high dimensional data. Therefore, high dimensional data analysis was considered via heuristic technique such as the similarity measure. Each human pattern such as walking, sitting, standing, and stepping up was obtained through experiment. By the results of the analysis, we also identified the overlapped and nonoverlapped data relation, and similarity measure analysis was also illustrated, and comparison with conventional similarity measure was also carried out. Hence, nonoverlapped data similarity analysis provided the clue to solve the similarity of high dimensional data. Considered high dimensional data analysis was designed with consideration of neighborhood information. Proposed similarity measure was applied to identify the behavior patterns of different persons, and different behaviours of the same person. Obtained analysis can be extended to organize health monitoring system for specially elderly persons. PMID:25110724

  8. Second-order schedules and the problem of conditioned reinforcement

    PubMed Central

    Stubbs, D. Alan

    1971-01-01

    Thirteen pigeons were exposed to a variety of second-order schedules in which responding under a component schedule was reinforced according to a schedule of reinforcement. Under different conditions, completion of each component resulted in either (1) the brief presentation of a stimulus also present during reinforcement (pairing operation), (2) the brief presentation of a stimulus not present during reinforcement (nonpairing operation), or (3) no brief stimulus presentation (tandem). Brief-stimulus presentations engendered a pattern of responding within components similar to that engendered by food. Patterning was observed when fixed-interval and fixed-ratio components were maintained under fixed- and variable-ratio and fixed- and variable-interval schedules. There were no apparent differences in performance under pairing and nonpairing conditions in any study. The properties of the stimuli presented in brief-stimulus operations produced different effects on response patterning. In one study, similar effects on performance were found whether brief-stimulus presentations were response-produced or delivered independently of responding. Response patterning did not occur when the component schedule under which a nonpaired stimulus was produced occurred independently of the food schedule. The results suggest a reevaluation of the role of conditioned reinforcement in second-order schedule performance. The similarity of behavior under pairing and nonpairing operations is consistent with two hypotheses: (1) the major effect is due to the discriminative properties of the brief stimulus; (2) the scheduling operation under which the paired or nonpaired stimulus is presented can establish it as a reinforcer. PMID:16811549

  9. Field Independence: Reviewing the Evidence

    ERIC Educational Resources Information Center

    Evans, Carol; Richardson, John T. E.; Waring, Michael

    2013-01-01

    Background: The construct of ?eld independence (FI) remains one of the most widely cited notions in research on cognitive style and on learning and instruction more generally. However, a great deal of confusion continues to exist around the de?nition of FI, its measurement, and the interpretation of research results, all of which have served to…

  10. Content Independence in Multimedia Databases.

    ERIC Educational Resources Information Center

    de Vries, Arjen P.

    2001-01-01

    Investigates the role of data management in multimedia digital libraries, and its implications for the design of database management systems. Introduces the notions of content abstraction and content independence. Proposes a blueprint of a new class of database technology, which supports the basic functionality for the management of both content…

  11. Independent Study Course Development Costs.

    ERIC Educational Resources Information Center

    Wright, Clayton R.

    1988-01-01

    Discusses actual costs for developing independent study print courses for use in learning centers or for distance delivery, and presents a resource allocation guideline based on figures from Grant MacEwan Community College (Alberta). Topics discussed include the course writer/developer, clerical support, copyright clearance, instructional design,…

  12. Boston: Cradle of American Independence

    ERIC Educational Resources Information Center

    Community College Journal, 2004

    2004-01-01

    The 2005 American Association of Community Colleges Annual Convention will be held April 6-9 in Boston. While thoroughly modern, the iconic city's identity is firmly rooted in the past. As the cradle of American independence, Boston's long history is an integral part of the American fabric. Adams, Revere, Hancock are more than historical figures;…

  13. Scales of Independent Behavior (SIB).

    ERIC Educational Resources Information Center

    Thomas, Paulette J.

    1990-01-01

    Designed for use with individuals ages 3 months to 44 years, the Scales of Independent Behavior (SIB) measure adaptive behavior and problem behaviors in such areas as motor skills, social interaction, language, personal self-care, punctuality, destructiveness, and inattention. This paper describes the SIB's administration, scoring,…

  14. 10 Questions about Independent Reading

    ERIC Educational Resources Information Center

    Truby, Dana

    2012-01-01

    Teachers know that establishing a robust independent reading program takes more than giving kids a little quiet time after lunch. But how do they set up a program that will maximize their students' gains? Teachers have to know their students' reading levels inside and out, help them find just-right books, and continue to guide them during…

  15. Will Independent Junior Colleges Survive?

    ERIC Educational Resources Information Center

    Blai, Boris, Jr.

    This essay reviews the current status of private independent junior colleges in the United States. Several studies and innovative programs are cited. Because private junior colleges face shrinking enrollments and diminished funding for instruction, services, and activities, they must now stress cost-effectiveness and practical financial management…

  16. Haptic Tracking Permits Bimanual Independence

    ERIC Educational Resources Information Center

    Rosenbaum, David A.; Dawson, Amanda A.; Challis, John H.

    2006-01-01

    This study shows that in a novel task--bimanual haptic tracking--neurologically normal human adults can move their 2 hands independently for extended periods of time with little or no training. Participants lightly touched buttons whose positions were moved either quasi-randomly in the horizontal plane by 1 or 2 human drivers (Experiment 1), in…

  17. Achieving Full Dynamic Similarity with Small-Scale Wind Turbine Models

    NASA Astrophysics Data System (ADS)

    Miller, Mark; Kiefer, Janik; Westergaard, Carsten; Hultmark, Marcus

    2016-11-01

    Power and thrust data as a function of Reynolds number and Tip Speed Ratio are presented at conditions matching those of a full scale turbine. Such data has traditionally been very difficult to acquire due to the large length-scales of wind turbines, and the limited size of conventional wind tunnels. Ongoing work at Princeton University employs a novel, high-pressure wind tunnel (up to 220 atmospheres of static pressure) which uses air as the working fluid. This facility allows adjustment of the Reynolds number (via the fluid density) independent of the Tip Speed Ratio, up to a Reynolds number (based on chord and velocity at the tip) of over 3 million. Achieving dynamic similarity using this approach implies very high power and thrust loading, which results in mechanical loads greater than 200 times those experienced by a similarly sized model in a conventional wind tunnel. In order to accurately report the power coefficients, a series of tests were carried out on a specially designed model turbine drive-train using an external testing bench to replicate tunnel loading. An accurate map of the drive-train performance at various operating conditions was determined. Finally, subsequent corrections to the power coefficient are discussed in detail. Supported by: National Science Foundation Grant CBET-1435254 (program director Gregory Rorrer).

  18. Bilateral Trade Flows and Income Distribution Similarity

    PubMed Central

    2016-01-01

    Current models of bilateral trade neglect the effects of income distribution. This paper addresses the issue by accounting for non-homothetic consumer preferences and hence investigating the role of income distribution in the context of the gravity model of trade. A theoretically justified gravity model is estimated for disaggregated trade data (Dollar volume is used as dependent variable) using a sample of 104 exporters and 108 importers for 1980–2003 to achieve two main goals. We define and calculate new measures of income distribution similarity and empirically confirm that greater similarity of income distribution between countries implies more trade. Using distribution-based measures as a proxy for demand similarities in gravity models, we find consistent and robust support for the hypothesis that countries with more similar income-distributions trade more with each other. The hypothesis is also confirmed at disaggregated level for differentiated product categories. PMID:27137462

  19. Evaluating Similarity Measures for Brain Image Registration.

    PubMed

    Razlighi, Q R; Kehtarnavaz, N; Yousefi, S

    2013-10-01

    Evaluation of similarity measures for image registration is a challenging problem due to its complex interaction with the underlying optimization, regularization, image type and modality. We propose a single performance metric, named robustness, as part of a new evaluation method which quantifies the effectiveness of similarity measures for brain image registration while eliminating the effects of the other parts of the registration process. We show empirically that similarity measures with higher robustness are more effective in registering degraded images and are also more successful in performing intermodal image registration. Further, we introduce a new similarity measure, called normalized spatial mutual information, for 3D brain image registration whose robustness is shown to be much higher than the existing ones. Consequently, it tolerates greater image degradation and provides more consistent outcomes for intermodal brain image registration.

  20. Heat transfer in geometrically similar cylinders

    NASA Technical Reports Server (NTRS)

    Riekert, P; Held, A

    1941-01-01

    The power and heat-stress conditions of geometrically similar engines are discussed. The advantages accruing from smaller cylinder dimensions are higher specific horsepower, lower weight per horsepower, lower piston temperature, and less frontal area, with reduced detonation tendency.

  1. Self-similarity in active colloid motion

    NASA Astrophysics Data System (ADS)

    Constant, Colin; Sukhov, Sergey; Dogariu, Aristide

    The self-similarity of displacements among randomly evolving systems has been used to describe the foraging patterns of animals and predict the growth of financial systems. At micron scales, the motion of colloidal particles can be analyzed by sampling their spatial displacement in time. For self-similar systems in equilibrium, the mean squared displacement increases linearly in time. However, external forces can take the system out of equilibrium, creating active colloidal systems, and making this evolution more complex. A moment scaling spectrum of the distribution of particle displacements quantifies the degree of self-similarity in the colloid motion. We will demonstrate that, by varying the temporal and spatial characteristics of the external forces, one can control the degree of self-similarity in active colloid motion.

  2. HYPOTHESIS TESTING WITH THE SIMILARITY INDEX

    EPA Science Inventory

    Mulltilocus DNA fingerprinting methods have been used extensively to address genetic issues in wildlife populations. Hypotheses concerning population subdivision and differing levels of diversity can be addressed through the use of the similarity index (S), a band-sharing coeffic...

  3. Understanding similarity of groundwater systems with empirical copulas

    NASA Astrophysics Data System (ADS)

    Haaf, Ezra; Kumar, Rohini; Samaniego, Luis; Barthel, Roland

    2016-04-01

    Within the classification framework for groundwater systems that aims for identifying similarity of hydrogeological systems and transferring information from a well-observed to an ungauged system (Haaf and Barthel, 2015; Haaf and Barthel, 2016), we propose a copula-based method for describing groundwater-systems similarity. Copulas are an emerging method in hydrological sciences that make it possible to model the dependence structure of two groundwater level time series, independently of the effects of their marginal distributions. This study is based on Samaniego et al. (2010), which described an approach calculating dissimilarity measures from bivariate empirical copula densities of streamflow time series. Subsequently, streamflow is predicted in ungauged basins by transferring properties from similar catchments. The proposed approach is innovative because copula-based similarity has not yet been applied to groundwater systems. Here we estimate the pairwise dependence structure of 600 wells in Southern Germany using 10 years of weekly groundwater level observations. Based on these empirical copulas, dissimilarity measures are estimated, such as the copula's lower- and upper corner cumulated probability, copula-based Spearman's rank correlation - as proposed by Samaniego et al. (2010). For the characterization of groundwater systems, copula-based metrics are compared with dissimilarities obtained from precipitation signals corresponding to the presumed area of influence of each groundwater well. This promising approach provides a new tool for advancing similarity-based classification of groundwater system dynamics. Haaf, E., Barthel, R., 2015. Methods for assessing hydrogeological similarity and for classification of groundwater systems on the regional scale, EGU General Assembly 2015, Vienna, Austria. Haaf, E., Barthel, R., 2016. An approach for classification of hydrogeological systems at the regional scale based on groundwater hydrographs EGU General Assembly

  4. Analog optoelectronic independent component analysis for radio frequency signals

    NASA Astrophysics Data System (ADS)

    Baylor, Martha-Elizabeth

    This thesis addresses the problem of blind source separation of signals at radio frequencies. Independent component analysis (ICA), which includes a second-order decorrelation followed by a fourth-order decorrelation, uses signal independence to estimate the original signals from the received mixtures. Until now, ICA has been applied to many applications at or below audio frequencies. The work presented here demonstrates that an optoelectronic implementation using the parallel processing nature of dynamic holography can overcome the computational difficulties associated with algorithmic implementations of ICA. The holographic nature of a photorefractive crystal combined with the non-linearity of an electro-optic modulator in a feedback loop can be described by a nonlinear dynamical equation. The dynamics can be cast in the form of Lotka-Volterra equations used to study the dynamics of competing populations of species. Although this analogy with the animal world is interesting, the dynamical equation associated with the fourth-order decorrelation system is fascinating. The statistics associated with the original signals, rather than an external potential, determine the dynamics of the system. In particular, the system is multistable, metastable, or monostable depending on whether the probability density functions of the original signals are sub-Gaussian, Gaussian, or super-Gaussian, respectively. The multistable solution, which occurs for sub-Gaussian signals, provides the winner-takes-all behavior required to separate signals. This ability to separate sub-Gaussian signals is advantageous since signals modulated on a sinusoidal carrier are sub-Gaussian. The fourth-order decorrelation system achieves greater than 40 dB signal separation on 200 MHz single-frequency sine waves and greater than 20 dB signal separation for 10 MHz bandwidth signals. The system performance is degraded by 10 to 20 dB when mixed electronically due to imperfections in the mixing circuitry

  5. Privacy-preserving matching of similar patients.

    PubMed

    Vatsalan, Dinusha; Christen, Peter

    2016-02-01

    The identification of similar entities represented by records in different databases has drawn considerable attention in many application areas, including in the health domain. One important type of entity matching application that is vital for quality healthcare analytics is the identification of similar patients, known as similar patient matching. A key component of identifying similar records is the calculation of similarity of the values in attributes (fields) between these records. Due to increasing privacy and confidentiality concerns, using the actual attribute values of patient records to identify similar records across different organizations is becoming non-trivial because the attributes in such records often contain highly sensitive information such as personal and medical details of patients. Therefore, the matching needs to be based on masked (encoded) values while being effective and efficient to allow matching of large databases. Bloom filter encoding has widely been used as an efficient masking technique for privacy-preserving matching of string and categorical values. However, no work on Bloom filter-based masking of numerical data, such as integer (e.g. age), floating point (e.g. body mass index), and modulus (numbers wrap around upon reaching a certain value, e.g. date and time), which are commonly required in the health domain, has been presented in the literature. We propose a framework with novel methods for masking numerical data using Bloom filters, thereby facilitating the calculation of similarities between records. We conduct an empirical study on publicly available real-world datasets which shows that our framework provides efficient masking and achieves similar matching accuracy compared to the matching of actual unencoded patient records.

  6. On distributional assumptions and whitened cosine similarities.

    PubMed

    Loog, Marco

    2008-06-01

    Recently, an interpretation of the whitened cosine similarity measure as a Bayes decision rule was proposed (C. Liu, "The Bayes Decision Rule Induced Similarity Measures,'' IEEE Trans. Pattern Analysis and Machine Intelligence, vol. 29, no. 6, pp. 1086-1090, June 2007. This communication makes the observation that some of the distributional assumptions made to derive this measure are very restrictive and, considered simultaneously, even inconsistent.

  7. Interlinguistic similarity and language death dynamics

    NASA Astrophysics Data System (ADS)

    Mira, J.; Paredes, Á.

    2005-03-01

    We analyze the time evolution of a system of two coexisting languages (Castillian Spanish and Galician, both spoken in northwest Spain) in the framework of a model given by Abrams and Strogatz (Nature 424 (2003) 900). It is shown that, contrary to the model's initial prediction, a stable bilingual situation is possible if the languages in competition are similar enough. Similarity is described with a simple parameter, whose value can be estimated from fits of the data.

  8. Similarity searching in large combinatorial chemistry spaces

    NASA Astrophysics Data System (ADS)

    Rarey, Matthias; Stahl, Martin

    2001-06-01

    We present a novel algorithm, called Ftrees-FS, for similarity searching in large chemistry spaces based on dynamic programming. Given a query compound, the algorithm generates sets of compounds from a given chemistry space that are similar to the query. The similarity search is based on the feature tree similarity measure representing molecules by tree structures. This descriptor allows handling combinatorial chemistry spaces as a whole instead of looking at subsets of enumerated compounds. Within few minutes of computing time, the algorithm is able to find the most similar compound in very large spaces as well as sets of compounds at an arbitrary similarity level. In addition, the diversity among the generated compounds can be controlled. A set of 17 000 fragments of known drugs, generated by the RECAP procedure from the World Drug Index, was used as the search chemistry space. These fragments can be combined to more than 1018 compounds of reasonable size. For validation, known antagonists/inhibitors of several targets including dopamine D4, histamine H1, and COX2 are used as queries. Comparison of the compounds created by Ftrees-FS to other known actives demonstrates the ability of the method to jump between structurally unrelated molecule classes.

  9. Prediction of Drug Indications Based on Chemical Interactions and Chemical Similarities

    PubMed Central

    Huang, Guohua; Lu, Yin; Lu, Changhong; Cai, Yu-Dong

    2015-01-01

    Discovering potential indications of novel or approved drugs is a key step in drug development. Previous computational approaches could be categorized into disease-centric and drug-centric based on the starting point of the issues or small-scaled application and large-scale application according to the diversity of the datasets. Here, a classifier has been constructed to predict the indications of a drug based on the assumption that interactive/associated drugs or drugs with similar structures are more likely to target the same diseases using a large drug indication dataset. To examine the classifier, it was conducted on a dataset with 1,573 drugs retrieved from Comprehensive Medicinal Chemistry database for five times, evaluated by 5-fold cross-validation, yielding five 1st order prediction accuracies that were all approximately 51.48%. Meanwhile, the model yielded an accuracy rate of 50.00% for the 1st order prediction by independent test on a dataset with 32 other drugs in which drug repositioning has been confirmed. Interestingly, some clinically repurposed drug indications that were not included in the datasets are successfully identified by our method. These results suggest that our method may become a useful tool to associate novel molecules with new indications or alternative indications with existing drugs. PMID:25821813

  10. A similarity-based data warehousing environment for medical images.

    PubMed

    Teixeira, Jefferson William; Annibal, Luana Peixoto; Felipe, Joaquim Cezar; Ciferri, Ricardo Rodrigues; Ciferri, Cristina Dutra de Aguiar

    2015-11-01

    A core issue of the decision-making process in the medical field is to support the execution of analytical (OLAP) similarity queries over images in data warehousing environments. In this paper, we focus on this issue. We propose imageDWE, a non-conventional data warehousing environment that enables the storage of intrinsic features taken from medical images in a data warehouse and supports OLAP similarity queries over them. To comply with this goal, we introduce the concept of perceptual layer, which is an abstraction used to represent an image dataset according to a given feature descriptor in order to enable similarity search. Based on this concept, we propose the imageDW, an extended data warehouse with dimension tables specifically designed to support one or more perceptual layers. We also detail how to build an imageDW and how to load image data into it. Furthermore, we show how to process OLAP similarity queries composed of a conventional predicate and a similarity search predicate that encompasses the specification of one or more perceptual layers. Moreover, we introduce an index technique to improve the OLAP query processing over images. We carried out performance tests over a data warehouse environment that consolidated medical images from exams of several modalities. The results demonstrated the feasibility and efficiency of our proposed imageDWE to manage images and to process OLAP similarity queries. The results also demonstrated that the use of the proposed index technique guaranteed a great improvement in query processing.

  11. Correlating human color similarity judgments and colorimetric representations

    NASA Astrophysics Data System (ADS)

    Vertan, Constantin C.; Ciuc, Mihai; Stoica, A.; Zamfir, Marta; Buzuloiu, Vasile V.; Fernandez-Maloigne, Christine

    2003-10-01

    A color similarity test was conducted on the 24 color patches of a Gretag Macbeth color checker. Color similarities were measured either by distances between standard colorimetric representations (such as RGB, Lab or spectral reflectance curves) or by human observer judgments. In each case, the dissimilarity matrix was processed by a classical, metric, multidimensional scaling algorithm, in order to produce a visually-interpretable two-dimensional plot of color dissimilarity. The analysis of the plots produces some interesting conclusions. First, the plots produced by the Lab, RGB and spectral representations exhibit very evident variation axes according to the luminance and basic chromatic differences (red-green, blue-yellow). This behavior (trivial for the Lab representation) suggests that the color similarity measurement by chromatic differences is implicitly embedded in the RGB and spectral representations. The color dissimilarity plots associated to the human judgments (for any individual, as well as for an "average" observer) exhibit a different organization, which mixes hue, saturation and luminance (HSV). According to these plots, the human similarity judgment is not entirely HSV-based. We prove that it is possible to obtain the same color dissimilarity plots if a fuzzy color model is assumed. The fuzzy color model provides similarity coefficients (similarity degrees) between pairs of colors, based on their inter-distance, according to an imposed "color confusion" control parameter, which seems to be relevant for the human vision.

  12. Semantic similarity between ontologies at different scales

    SciTech Connect

    Zhang, Qingpeng; Haglin, David J.

    2016-04-01

    In the past decade, existing and new knowledge and datasets has been encoded in different ontologies for semantic web and biomedical research. The size of ontologies is often very large in terms of number of concepts and relationships, which makes the analysis of ontologies and the represented knowledge graph computational and time consuming. As the ontologies of various semantic web and biomedical applications usually show explicit hierarchical structures, it is interesting to explore the trade-offs between ontological scales and preservation/precision of results when we analyze ontologies. This paper presents the first effort of examining the capability of this idea via studying the relationship between scaling biomedical ontologies at different levels and the semantic similarity values. We evaluate the semantic similarity between three Gene Ontology slims (Plant, Yeast, and Candida, among which the latter two belong to the same kingdom—Fungi) using four popular measures commonly applied to biomedical ontologies (Resnik, Lin, Jiang-Conrath, and SimRel). The results of this study demonstrate that with proper selection of scaling levels and similarity measures, we can significantly reduce the size of ontologies without losing substantial detail. In particular, the performance of Jiang-Conrath and Lin are more reliable and stable than that of the other two in this experiment, as proven by (a) consistently showing that Yeast and Candida are more similar (as compared to Plant) at different scales, and (b) small deviations of the similarity values after excluding a majority of nodes from several lower scales. This study provides a deeper understanding of the application of semantic similarity to biomedical ontologies, and shed light on how to choose appropriate semantic similarity measures for biomedical engineering.

  13. Self-similar Turing patterns: An anomalous diffusion consequence

    NASA Astrophysics Data System (ADS)

    Hernández, D.; Herrera-Hernández, E. C.; Núñez-López, M.; Hernández-Coronado, H.

    2017-02-01

    In this work, we show that under specific anomalous diffusion conditions, chemical systems can produce well-ordered self-similar concentration patterns through diffusion-driven instability. We also find spiral patterns and patterns with mixtures of rotational symmetries. The type of anomalous diffusion discussed in this work, either subdiffusion or superdiffusion, is a consequence of the medium heterogeneity, and it is modeled through a space-dependent diffusion coefficient with a power-law functional form.

  14. Self-similar Turing patterns: An anomalous diffusion consequence.

    PubMed

    Hernández, D; Herrera-Hernández, E C; Núñez-López, M; Hernández-Coronado, H

    2017-02-01

    In this work, we show that under specific anomalous diffusion conditions, chemical systems can produce well-ordered self-similar concentration patterns through diffusion-driven instability. We also find spiral patterns and patterns with mixtures of rotational symmetries. The type of anomalous diffusion discussed in this work, either subdiffusion or superdiffusion, is a consequence of the medium heterogeneity, and it is modeled through a space-dependent diffusion coefficient with a power-law functional form.

  15. Activity-relevant similarity values for fingerprints and implications for similarity searching

    PubMed Central

    Jasial, Swarit; Hu, Ye; Vogt, Martin; Bajorath, Jürgen

    2016-01-01

    A largely unsolved problem in chemoinformatics is the issue of how calculated compound similarity relates to activity similarity, which is central to many applications. In general, activity relationships are predicted from calculated similarity values. However, there is no solid scientific foundation to bridge between calculated molecular and observed activity similarity. Accordingly, the success rate of identifying new active compounds by similarity searching is limited. Although various attempts have been made to establish relationships between calculated fingerprint similarity values and biological activities, none of these has yielded generally applicable rules for similarity searching. In this study, we have addressed the question of molecular versus activity similarity in a more fundamental way. First, we have evaluated if activity-relevant similarity value ranges could in principle be identified for standard fingerprints and distinguished from similarity resulting from random compound comparisons. Then, we have analyzed if activity-relevant similarity values could be used to guide typical similarity search calculations aiming to identify active compounds in databases. It was found that activity-relevant similarity values can be identified as a characteristic feature of fingerprints. However, it was also shown that such values cannot be reliably used as thresholds for practical similarity search calculations. In addition, the analysis presented herein helped to rationalize differences in fingerprint search performance. PMID:27127620

  16. Steps to Independent Living Series.

    ERIC Educational Resources Information Center

    Lobb, Nancy

    This set of six activity books and a teacher's guide is designed to help students from eighth grade to adulthood with special needs to learn independent living skills. The activity books have a reading level of 2.5 and address: (1) "How to Get Well When You're Sick or Hurt," including how to take a temperature, see a doctor, and use medicines…

  17. Prospects for an Independent Kurdistan

    DTIC Science & Technology

    2008-03-01

    are mostly Sunni.25 In addition, about 5 percent of the Kurds are Yazidis, which is a “mixture of Islamic, Christian , Jewish, and pagan beliefs...significant political progress has been made by the Kurds of Iraq. The probability of ongoing ethnic and religious strife within Iraq creates an...seek independence. Figure 2 shows the ethno- religious 38 “Guide to Iraqi political parties,” BBC News, http://news.bbc.co.uk

  18. A residual stress study in similar and dissimilar welds

    SciTech Connect

    Eisazadeh, Hamid; Goldak, John A.; Aidun, Daryush K.; Coules, Harry E.; Bunn, Jeffrey R; Achuthan, A.

    2016-04-01

    Residual strain distributions in similar and dissimilar welds were measured using neutron diffraction (ND) method. Then, using three strain components, three-dimensional stress states were calculated. The results were used to determine the effect of the martensitic phase transformation and material properties on residual stress (RS) distribution. It was observed that smaller longitudinal RS was induced in the low carbon steel side of dissimilar weld when compared to its similar weld. Also, it was found that the transverse RS near and within the weld zone (WZ) in dissimilar weld exhibited a distinctive trend, with tensile mode reaching the yield strength of the base metal (BM). In order to characterize the WZ in dissimilar weld, we deployed optical microscopy, hardness, and energy dispersive X-ray spectroscopy (EDAX). This study not only provides further insight into the RS state in similar and dissimilar welds; it also delivers important consequences of phase transformation in the latter case.

  19. A residual stress study in similar and dissimilar welds

    DOE PAGES

    Eisazadeh, Hamid; Goldak, John A.; Aidun, Daryush K.; ...

    2016-04-01

    Residual strain distributions in similar and dissimilar welds were measured using neutron diffraction (ND) method. Then, using three strain components, three-dimensional stress states were calculated. The results were used to determine the effect of the martensitic phase transformation and material properties on residual stress (RS) distribution. It was observed that smaller longitudinal RS was induced in the low carbon steel side of dissimilar weld when compared to its similar weld. Also, it was found that the transverse RS near and within the weld zone (WZ) in dissimilar weld exhibited a distinctive trend, with tensile mode reaching the yield strength ofmore » the base metal (BM). In order to characterize the WZ in dissimilar weld, we deployed optical microscopy, hardness, and energy dispersive X-ray spectroscopy (EDAX). This study not only provides further insight into the RS state in similar and dissimilar welds; it also delivers important consequences of phase transformation in the latter case.« less

  20. Self-Similar Compressible Free Vortices

    NASA Technical Reports Server (NTRS)

    vonEllenrieder, Karl

    1998-01-01

    Lie group methods are used to find both exact and numerical similarity solutions for compressible perturbations to all incompressible, two-dimensional, axisymmetric vortex reference flow. The reference flow vorticity satisfies an eigenvalue problem for which the solutions are a set of two-dimensional, self-similar, incompressible vortices. These solutions are augmented by deriving a conserved quantity for each eigenvalue, and identifying a Lie group which leaves the reference flow equations invariant. The partial differential equations governing the compressible perturbations to these reference flows are also invariant under the action of the same group. The similarity variables found with this group are used to determine the decay rates of the velocities and thermodynamic variables in the self-similar flows, and to reduce the governing partial differential equations to a set of ordinary differential equations. The ODE's are solved analytically and numerically for a Taylor vortex reference flow, and numerically for an Oseen vortex reference flow. The solutions are used to examine the dependencies of the temperature, density, entropy, dissipation and radial velocity on the Prandtl number. Also, experimental data on compressible free vortex flow are compared to the analytical results, the evolution of vortices from initial states which are not self-similar is discussed, and the energy transfer in a slightly-compressible vortex is considered.

  1. Efficient Video Similarity Measurement and Search

    SciTech Connect

    Cheung, Sen-ching S.

    2002-12-19

    The amount of information on the world wide web has grown enormously since its creation in 1990. Duplication of content is inevitable because there is no central management on the web. Studies have shown that many similar versions of the same text documents can be found throughout the web. This redundancy problem is more severe for multimedia content such as web video sequences, as they are often stored in multiple locations and different formats to facilitate downloading and streaming. Similar versions of the same video can also be found, unknown to content creators, when web users modify and republish original content using video editing tools. Identifying similar content can benefit many web applications and content owners. For example, it will reduce the number of similar answers to a web search and identify inappropriate use of copyright content. In this dissertation, they present a system architecture and corresponding algorithms to efficiently measure, search, and organize similar video sequences found on any large database such as the web.

  2. Predicting missing links via structural similarity

    NASA Astrophysics Data System (ADS)

    Lyu, Guo-Dong; Fan, Chang-Jun; Yu, Lian-Fei; Xiu, Bao-Xin; Zhang, Wei-Ming

    2015-04-01

    Predicting missing links in networks plays a significant role in modern science. On the basis of structural similarity, our paper proposes a new node-similarity-based measure called biased resource allocation (BRA), which is motivated by the resource allocation (RA) measure. Comparisons between BRA and nine well-known node-similarity-based measures on five real networks indicate that BRA performs no worse than RA, which was the best node-similarity-based index in previous researches. Afterwards, based on localPath (LP) and Katz measure, we propose another two improved measures, named Im-LocalPath and Im-Katz respectively. Numerical results show that the prediction accuracy of both Im-LP and Im-Katz measure improve compared with the original LP and Katz measure. Finally, a new path-similarity-based measure and its improved measure, called LYU and Im-LYU measure, are proposed and especially, Im-LYU measure is shown to perform more remarkably than other mentioned measures.

  3. Earthquake detection through computationally efficient similarity search.

    PubMed

    Yoon, Clara E; O'Reilly, Ossian; Bergen, Karianne J; Beroza, Gregory C

    2015-12-01

    Seismology is experiencing rapid growth in the quantity of data, which has outpaced the development of processing algorithms. Earthquake detection-identification of seismic events in continuous data-is a fundamental operation for observational seismology. We developed an efficient method to detect earthquakes using waveform similarity that overcomes the disadvantages of existing detection methods. Our method, called Fingerprint And Similarity Thresholding (FAST), can analyze a week of continuous seismic waveform data in less than 2 hours, or 140 times faster than autocorrelation. FAST adapts a data mining algorithm, originally designed to identify similar audio clips within large databases; it first creates compact "fingerprints" of waveforms by extracting key discriminative features, then groups similar fingerprints together within a database to facilitate fast, scalable search for similar fingerprint pairs, and finally generates a list of earthquake detections. FAST detected most (21 of 24) cataloged earthquakes and 68 uncataloged earthquakes in 1 week of continuous data from a station located near the Calaveras Fault in central California, achieving detection performance comparable to that of autocorrelation, with some additional false detections. FAST is expected to realize its full potential when applied to extremely long duration data sets over a distributed network of seismic stations. The widespread application of FAST has the potential to aid in the discovery of unexpected seismic signals, improve seismic monitoring, and promote a greater understanding of a variety of earthquake processes.

  4. Earthquake detection through computationally efficient similarity search

    PubMed Central

    Yoon, Clara E.; O’Reilly, Ossian; Bergen, Karianne J.; Beroza, Gregory C.

    2015-01-01

    Seismology is experiencing rapid growth in the quantity of data, which has outpaced the development of processing algorithms. Earthquake detection—identification of seismic events in continuous data—is a fundamental operation for observational seismology. We developed an efficient method to detect earthquakes using waveform similarity that overcomes the disadvantages of existing detection methods. Our method, called Fingerprint And Similarity Thresholding (FAST), can analyze a week of continuous seismic waveform data in less than 2 hours, or 140 times faster than autocorrelation. FAST adapts a data mining algorithm, originally designed to identify similar audio clips within large databases; it first creates compact “fingerprints” of waveforms by extracting key discriminative features, then groups similar fingerprints together within a database to facilitate fast, scalable search for similar fingerprint pairs, and finally generates a list of earthquake detections. FAST detected most (21 of 24) cataloged earthquakes and 68 uncataloged earthquakes in 1 week of continuous data from a station located near the Calaveras Fault in central California, achieving detection performance comparable to that of autocorrelation, with some additional false detections. FAST is expected to realize its full potential when applied to extremely long duration data sets over a distributed network of seismic stations. The widespread application of FAST has the potential to aid in the discovery of unexpected seismic signals, improve seismic monitoring, and promote a greater understanding of a variety of earthquake processes. PMID:26665176

  5. Geometric similarity between protein-RNA interfaces.

    PubMed

    Zhou, Peng; Zou, Jianwei; Tian, Feifei; Shang, Zhicai

    2009-12-01

    A new method is described to measure the geometric similarity between protein-RNA interfaces quantitatively. The method is based on a procedure that dissects the interface geometry in terms of the spatial relationships between individual amino acid nucleotide pairs. Using this technique, we performed an all-on-all comparison of 586 protein-RNA interfaces deposited in the current Protein Data Bank, as the result, an interface-interface similarity score matrix was obtained. Based upon this matrix, hierarchical clustering was carried out which yielded a complete clustering tree for the 586 protein-RNA interfaces. By investigating the organizing behavior of the clustering tree and the SCOP classification of protein partners in complexes, a geometrically nonredundant, diverse data set (representative data set) consisting of 45 distinct protein-RNA interfaces was extracted for the purpose of studying protein-RNA interactions, RNA regulations, and drug design. We classified protein-RNA interfaces into three types. In type I, the families and interface structural classes of the protein partners, as well as the interface geometries are all similar. In type II, the interface geometries and the interface structural classes are similar, whereas the protein families are different. In type III, only the interface geometries are similar but the protein families and the interface structural classes are distinct. Furthermore, we also show two new RNA recognition themes derived from the representative data set.

  6. 49 CFR 1013.1 - The independence of the trustee of a voting trust.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 49 Transportation 8 2011-10-01 2011-10-01 false The independence of the trustee of a voting trust... VOTING TRUSTS § 1013.1 The independence of the trustee of a voting trust. (a) In order to avoid an... complete independence from the creator of the trust (the settlor). (c) Neither the trustee, the...

  7. 49 CFR 1013.1 - The independence of the trustee of a voting trust.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 49 Transportation 8 2010-10-01 2010-10-01 false The independence of the trustee of a voting trust... VOTING TRUSTS § 1013.1 The independence of the trustee of a voting trust. (a) In order to avoid an... complete independence from the creator of the trust (the settlor). (c) Neither the trustee, the...

  8. 49 CFR 1013.1 - The independence of the trustee of a voting trust.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 49 Transportation 8 2014-10-01 2014-10-01 false The independence of the trustee of a voting trust... VOTING TRUSTS § 1013.1 The independence of the trustee of a voting trust. (a) In order to avoid an... complete independence from the creator of the trust (the settlor). (c) Neither the trustee, the...

  9. 38 CFR 21.4267 - Approval of independent study.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... similar courses. (Authority: 38 U.S.C. 3014, 3523, 3672, 3676(e), 3680A(a)) (b) Definition of independent... faculty of the institution of higher learning. The interaction may be personally or through use of..., conventional classroom or laboratory sessions; and (iii) It is not a course listed in paragraph (c), (d), or...

  10. Measurement-device-independent quantum digital signatures

    NASA Astrophysics Data System (ADS)

    Puthoor, Ittoop Vergheese; Amiri, Ryan; Wallden, Petros; Curty, Marcos; Andersson, Erika

    2016-08-01

    Digital signatures play an important role in software distribution, modern communication, and financial transactions, where it is important to detect forgery and tampering. Signatures are a cryptographic technique for validating the authenticity and integrity of messages, software, or digital documents. The security of currently used classical schemes relies on computational assumptions. Quantum digital signatures (QDS), on the other hand, provide information-theoretic security based on the laws of quantum physics. Recent work on QDS Amiri et al., Phys. Rev. A 93, 032325 (2016);, 10.1103/PhysRevA.93.032325 Yin, Fu, and Zeng-Bing, Phys. Rev. A 93, 032316 (2016), 10.1103/PhysRevA.93.032316 shows that such schemes do not require trusted quantum channels and are unconditionally secure against general coherent attacks. However, in practical QDS, just as in quantum key distribution (QKD), the detectors can be subjected to side-channel attacks, which can make the actual implementations insecure. Motivated by the idea of measurement-device-independent quantum key distribution (MDI-QKD), we present a measurement-device-independent QDS (MDI-QDS) scheme, which is secure against all detector side-channel attacks. Based on the rapid development of practical MDI-QKD, our MDI-QDS protocol could also be experimentally implemented, since it requires a similar experimental setup.

  11. Inferring Trust Based on Similarity with TILLIT

    NASA Astrophysics Data System (ADS)

    Tavakolifard, Mozhgan; Herrmann, Peter; Knapskog, Svein J.

    A network of people having established trust relations and a model for propagation of related trust scores are fundamental building blocks in many of today’s most successful e-commerce and recommendation systems. However, the web of trust is often too sparse to predict trust values between non-familiar people with high accuracy. Trust inferences are transitive associations among users in the context of an underlying social network and may provide additional information to alleviate the consequences of the sparsity and possible cold-start problems. Such approaches are helpful, provided that a complete trust path exists between the two users. An alternative approach to the problem is advocated in this paper. Based on collaborative filtering one can exploit the like-mindedness resp. similarity of individuals to infer trust to yet unknown parties which increases the trust relations in the web. For instance, if one knows that with respect to a specific property, two parties are trusted alike by a large number of different trusters, one can assume that they are similar. Thus, if one has a certain degree of trust to the one party, one can safely assume a very similar trustworthiness of the other one. In an attempt to provide high quality recommendations and proper initial trust values even when no complete trust propagation path or user profile exists, we propose TILLIT — a model based on combination of trust inferences and user similarity. The similarity is derived from the structure of the trust graph and users’ trust behavior as opposed to other collaborative-filtering based approaches which use ratings of items or user’s profile. We describe an algorithm realizing the approach based on a combination of trust inferences and user similarity, and validate the algorithm using a real large-scale data-set.

  12. Quantifying the similarity of seismic polarizations

    NASA Astrophysics Data System (ADS)

    Jones, Joshua P.; Eaton, David W.; Caffagni, Enrico

    2016-02-01

    Assessing the similarities of seismic attributes can help identify tremor, low signal-to-noise (S/N) signals and converted or reflected phases, in addition to diagnosing site noise and sensor misalignment in arrays. Polarization analysis is a widely accepted method for studying the orientation and directional characteristics of seismic phases via computed attributes, but similarity is ordinarily discussed using qualitative comparisons with reference values or known seismic sources. Here we introduce a technique for quantitative polarization similarity that uses weighted histograms computed in short, overlapping time windows, drawing on methods adapted from the image processing and computer vision literature. Our method accounts for ambiguity in azimuth and incidence angle and variations in S/N ratio. Measuring polarization similarity allows easy identification of site noise and sensor misalignment and can help identify coherent noise and emergent or low S/N phase arrivals. Dissimilar azimuths during phase arrivals indicate misaligned horizontal components, dissimilar incidence angles during phase arrivals indicate misaligned vertical components and dissimilar linear polarization may indicate a secondary noise source. Using records of the Mw = 8.3 Sea of Okhotsk earthquake, from Canadian National Seismic Network broad-band sensors in British Columbia and Yukon Territory, Canada, and a vertical borehole array at Hoadley gas field, central Alberta, Canada, we demonstrate that our method is robust to station spacing. Discrete wavelet analysis extends polarization similarity to the time-frequency domain in a straightforward way. Time-frequency polarization similarities of borehole data suggest that a coherent noise source may have persisted above 8 Hz several months after peak resource extraction from a `flowback' type hydraulic fracture.

  13. Molecular fingerprint similarity search in virtual screening.

    PubMed

    Cereto-Massagué, Adrià; Ojeda, María José; Valls, Cristina; Mulero, Miquel; Garcia-Vallvé, Santiago; Pujadas, Gerard

    2015-01-01

    Molecular fingerprints have been used for a long time now in drug discovery and virtual screening. Their ease of use (requiring little to no configuration) and the speed at which substructure and similarity searches can be performed with them - paired with a virtual screening performance similar to other more complex methods - is the reason for their popularity. However, there are many types of fingerprints, each representing a different aspect of the molecule, which can greatly affect search performance. This review focuses on commonly used fingerprint algorithms, their usage in virtual screening, and the software packages and online tools that provide these algorithms.

  14. Some more similarities between Peirce and Skinner

    PubMed Central

    Moxley, Roy A.

    2002-01-01

    C. S. Peirce is noted for pioneering a variety of views, and the case is made here for the similarities and parallels between his views and B. F. Skinner's radical behaviorism. In addition to parallels previously noted, these similarities include an advancement of experimental science, a behavioral psychology, a shift from nominalism to realism, an opposition to positivism, a selectionist account for strengthening behavior, the importance of a community of selves, a recursive approach to method, and the probabilistic nature of truth. Questions are raised as to the extent to which Skinner's radical behaviorism, as distinguished from his S-R positivism, may be seen as an extension of Peirce's pragmatism. PMID:22478387

  15. The collagenous gastroenteritides: similarities and differences.

    PubMed

    Gopal, Purva; McKenna, Barbara J

    2010-10-01

    Collagenous gastritis, collagenous sprue, and collagenous colitis share striking histologic similarities and occur together in some patients. They also share some drug and disease associations. Pediatric cases of collagenous gastritis, however, lack most of these associations. The etiologies of the collagenous gastroenteritides are not known, so it is not clear whether they are similar because they share pathogeneses, or because they indicate a common histologic response to varying injuries. The features, disease and drug associations, and the inquiries into the pathogenesis of these disorders are reviewed.

  16. Similarity Based Semantic Web Service Match

    NASA Astrophysics Data System (ADS)

    Peng, Hui; Niu, Wenjia; Huang, Ronghuai

    Semantic web service discovery aims at returning the most matching advertised services to the service requester by comparing the semantic of the request service with an advertised service. The semantic of a web service are described in terms of inputs, outputs, preconditions and results in Ontology Web Language for Service (OWL-S) which formalized by W3C. In this paper we proposed an algorithm to calculate the semantic similarity of two services by weighted averaging their inputs and outputs similarities. Case study and applications show the effectiveness of our algorithm in service match.

  17. Unsupervised hyperspectral image analysis using independent component analysis (ICA)

    SciTech Connect

    S. S. Chiang; I. W. Ginsberg

    2000-06-30

    In this paper, an ICA-based approach is proposed for hyperspectral image analysis. It can be viewed as a random version of the commonly used linear spectral mixture analysis, in which the abundance fractions in a linear mixture model are considered to be unknown independent signal sources. It does not require the full rank of the separating matrix or orthogonality as most ICA methods do. More importantly, the learning algorithm is designed based on the independency of the material abundance vector rather than the independency of the separating matrix generally used to constrain the standard ICA. As a result, the designed learning algorithm is able to converge to non-orthogonal independent components. This is particularly useful in hyperspectral image analysis since many materials extracted from a hyperspectral image may have similar spectral signatures and may not be orthogonal. The AVIRIS experiments have demonstrated that the proposed ICA provides an effective unsupervised technique for hyperspectral image classification.

  18. Great Apes' Capacities to Recognize Relational Similarity

    ERIC Educational Resources Information Center

    Haun, Daniel B. M.; Call, Josep

    2009-01-01

    Recognizing relational similarity relies on the ability to understand that defining object properties might not lie in the objects individually, but in the relations of the properties of various object to each other. This aptitude is highly relevant for many important human skills such as language, reasoning, categorization and understanding…

  19. Mental Institutions and Similar Phenomena Called Schools

    ERIC Educational Resources Information Center

    Fischer, Ronald W.

    1971-01-01

    Mental institutions and public schools appear to have many similarities, and they often operate in ways that would seem contradictory to their philosophy. This article explores certain atrocities to the self" that result from programs that are intended to be beneficial but, in reality, often result in dehumanization. (Author)

  20. Recognizing Similarities between Fraction Word Problems.

    ERIC Educational Resources Information Center

    Hardiman, Pamela Thibodeau

    Deciding how to approach a word problem for solution is a critical stage of problem solving, and is the stage which frequently presents considerable difficulty for novices. Do novices use the same information that experts do in deciding that two problems would be solved similarly? This set of four studies indicates that novices rely more on…

  1. Similarities in Aegyptopithecus and Afropithecus facial morphology.

    PubMed

    Leakey, M G; Leakey, R E; Richtsmeier, J T; Simons, E L; Walker, A C

    1991-01-01

    Recently discovered cranial fossils from the Oligocene deposits of the Fayum depression in Egypt provide many details of the facial morphology of Aegyptopithecus zeuxis. Similar features are found in the Miocene hominoid Afropithecus turkanensis. Their presence is the first good evidence of a strong phenetic link between the Oligocene and Miocene hominoids of Africa. A comparison of trait lists emphasizes the similarities of the two fossil species, and leads us to conclude that the two fossil genera share many primitive facial features. In addition, we studied facial morphology using finite-element scaling analysis and found that the two genera show similarities in morphological integration, or the way in which biological landmarks relate to one another in three dimensions to define the form of the organism. Size differences between the two genera are much greater than the relatively minor shape differences. Analysis of variability in landmark location among the four Aegyptopithecus specimens indicates that variability within the sample is not different from that found within two samples of modern macaques. We propose that the shape differences found among the four Aegyptopithecus specimens simply reflect individual variation in facial characteristics, and that the similarities in facial morphology between Aegyptopithecus and Afropithecus probably represent a complex of primitive facial features retained over millions of years.

  2. Predicting spatial similarity of freshwater fish biodiversity

    PubMed Central

    Azaele, Sandro; Muneepeerakul, Rachata; Maritan, Amos; Rinaldo, Andrea; Rodriguez-Iturbe, Ignacio

    2009-01-01

    A major issue in modern ecology is to understand how ecological complexity at broad scales is regulated by mechanisms operating at the organismic level. What specific underlying processes are essential for a macroecological pattern to emerge? Here, we analyze the analytical predictions of a general model suitable for describing the spatial biodiversity similarity in river ecosystems, and benchmark them against the empirical occurrence data of freshwater fish species collected in the Mississippi–Missouri river system. Encapsulating immigration, emigration, and stochastic noise, and without resorting to species abundance data, the model is able to reproduce the observed probability distribution of the Jaccard similarity index at any given distance. In addition to providing an excellent agreement with the empirical data, this approach accounts for heterogeneities of different subbasins, suggesting a strong dependence of biodiversity similarity on their respective climates. Strikingly, the model can also predict the actual probability distribution of the Jaccard similarity index for any distance when considering just a relatively small sample. The proposed framework supports the notion that simplified macroecological models are capable of predicting fundamental patterns—a theme at the heart of modern community ecology. PMID:19359481

  3. Similarity of Science Textbooks: A Content Analysis

    ERIC Educational Resources Information Center

    Yost, Michael

    1973-01-01

    Studied the similarity of the astronomy portion in five science textbooks at the fourth through sixth grade levels by comparing students' responses to text authors' requirements. Concluded that the texts had more in common across grade levels than within grade levels. (CC)

  4. Cognitive Similarity in Normal and Schizogenic Families.

    ERIC Educational Resources Information Center

    Leibowitz, Gerald

    The basic purpose of this study was to measure cognitive similarity, and to test the hypothesis that the cognitive organization of a child (normal or schizophrenic) is more like that of his own parents than it is like that of randomly chosen, unrelated adults. Thirty-six matched family triads, half with sons hospitalized for a schizophrenic…

  5. [Combination similarity algorithm on chromatographic fingerprints].

    PubMed

    Zhan, Xueyan; Shi, Xinyuan; Duan, Tianxuan; Li, Lei; Qiao, Yanjiang

    2010-11-01

    The similarity of chromatographic fingerprints is one of the effective approaches evaluating the quality stability of Chinese medicine, and the cosine of angle plays an important role in the application of similarity. However, the cosine approach is insensitive to the data difference when the distribution range of the data sets is wide. When the data proportion of the reference sample and the test sample is greatly different, it confirms that the sensitivity of the cosine to the differences of the peaks owned by both the reference sample and the test sample differs from the peaks owned only by the reference sample or the test sample in this study. The method considers the peaks owned by one sample in addition to peaks owned by both samples, and determines their own appropriate weigh targeting for the maximal homostasis value of proportion among the peaks of all of Smilax glabra Roxb. samples. The method based on sample data could reflect the difference in the chemical composition area ratio between the reference sample and test samples sensitively, and measures the similarity among the nine Smilax glabra Roxb. samples, which is a new similarity algorithm for evaluating the quality stability of herbal medicines.

  6. Independent accident investigation: a modern safety tool.

    PubMed

    Stoop, John A

    2004-07-26

    Historically, safety has been subjected to a fragmented approach. In the past, every department has had its own responsibility towards safety, focusing either on working conditions, internal safety, external safety, rescue and emergency, public order or security. They each issued policy documents, which in their time were leading statements for elaboration and regulation. They also addressed safety issues with tools of various nature, often specifically developed within their domain. Due to a series of major accidents and disasters, the focus of attention is shifting from complying with quantitative risk standards towards intervention in primary operational processes, coping with systemic deficiencies and a more integrated assessment of safety in its societal context. In The Netherlands recognition of the importance of independent investigations has led to an expansion of this philosophy from the transport sector to other sectors. The philosophy now covers transport, industry, defense, natural disaster, environment and health and other major occurrences such as explosions, fires, and collapse of buildings or structures. In 2003 a multi-sector covering law will establish an independent safety board in The Netherlands. At a European level, mandatory investigation agencies are recognized as indispensable safety instruments for aviation, railways and the maritime sector, for which EU Directives are in place or being progressed [Transport accident and incident investigation in the European Union, European Transport Safety Council, ISBN 90-76024-10-3, Brussel, 2001]. Due to a series of major events, attention has been drawn to the consequences of disasters, highlighting the involvement of rescue and emergency services. They also have become subjected to investigative efforts, which in return, puts demands on investigation methodology. This paper comments on an evolutionary development in safety thinking and of safety boards, highlighting some consequences for strategic

  7. Quantifying Visual Similarity in Clinical Iconic Graphics

    PubMed Central

    Payne, Philip R.O.; Starren, Justin B.

    2005-01-01

    Objective: The use of icons and other graphical components in user interfaces has become nearly ubiquitous. The interpretation of such icons is based on the assumption that different users perceive the shapes similarly. At the most basic level, different users must agree on which shapes are similar and which are different. If this similarity can be measured, it may be usable as the basis to design better icons. Design: The purpose of this study was to evaluate a novel method for categorizing the visual similarity of graphical primitives, called Presentation Discovery, in the domain of mammography. Six domain experts were given 50 common textual mammography findings and asked to draw how they would represent those findings graphically. Nondomain experts sorted the resulting graphics into groups based on their visual characteristics. The resulting groups were then analyzed using traditional statistics and hypothesis discovery tools. Strength of agreement was evaluated using computational simulations of sorting behavior. Measurements: Sorter agreement was measured at both the individual graphical and concept-group levels using a novel simulation-based method. “Consensus clusters” of graphics were derived using a hierarchical clustering algorithm. Results: The multiple sorters were able to reliably group graphics into similar groups that strongly correlated with underlying domain concepts. Visual inspection of the resulting consensus clusters indicated that graphical primitives that could be informative in the design of icons were present. Conclusion: The method described provides a rigorous alternative to intuitive design processes frequently employed in the design of icons and other graphical interface components. PMID:15684136

  8. Anonymous indexing of health conditions for a similarity measure.

    PubMed

    Song, Insu; Marsh, Nigel V

    2012-07-01

    A health social network is an online information service which facilitates information sharing between closely related members of a community with the same or a similar health condition. Over the years, many automated recommender systems have been developed for social networking in order to help users find their communities of interest. For health social networking, the ideal source of information for measuring similarities of patients is the medical information of the patients. However, it is not desirable that such sensitive and private information be shared over the Internet. This is also true for many other security sensitive domains. A new information-sharing scheme is developed where each patient is represented as a small number of (possibly disjoint) d-words (discriminant words) and the d-words are used to measure similarities between patients without revealing sensitive personal information. The d-words are simple words like "food,'' and thus do not contain identifiable personal information. This makes our method an effective one-way hashing of patient assessments for a similarity measure. The d-words can be easily shared on the Internet to find peers who might have similar health conditions.

  9. How similar are recognition memory and inductive reasoning?

    PubMed

    Hayes, Brett K; Heit, Evan

    2013-07-01

    Conventionally, memory and reasoning are seen as different types of cognitive activities driven by different processes. In two experiments, we challenged this view by examining the relationship between recognition memory and inductive reasoning involving multiple forms of similarity. A common study set (members of a conjunctive category) was followed by a test set containing old and new category members, as well as items that matched the study set on only one dimension. The study and test sets were presented under recognition or induction instructions. In Experiments 1 and 2, the inductive property being generalized was varied in order to direct attention to different dimensions of similarity. When there was no time pressure on decisions, patterns of positive responding were strongly affected by property type, indicating that different types of similarity were driving recognition and induction. By comparison, speeded judgments showed weaker property effects and could be explained by generalization based on overall similarity. An exemplar model, GEN-EX (GENeralization from EXamples), could account for both the induction and recognition data. These findings show that induction and recognition share core component processes, even when the tasks involve flexible forms of similarity.

  10. Networks of plants: how to measure similarity in vegetable species

    NASA Astrophysics Data System (ADS)

    Vivaldo, Gianna; Masi, Elisa; Pandolfi, Camilla; Mancuso, Stefano; Caldarelli, Guido

    2016-06-01

    Despite the common misconception of nearly static organisms, plants do interact continuously with the environment and with each other. It is fair to assume that during their evolution they developed particular features to overcome similar problems and to exploit possibilities from environment. In this paper we introduce various quantitative measures based on recent advancements in complex network theory that allow to measure the effective similarities of various species. By using this approach on the similarity in fruit-typology ecological traits we obtain a clear plant classification in a way similar to traditional taxonomic classification. This result is not trivial, since a similar analysis done on the basis of diaspore morphological properties do not provide any clear parameter to classify plants species. Complex network theory can then be used in order to determine which feature amongst many can be used to distinguish scope and possibly evolution of plants. Future uses of this approach range from functional classification to quantitative determination of plant communities in nature.

  11. Networks of plants: how to measure similarity in vegetable species.

    PubMed

    Vivaldo, Gianna; Masi, Elisa; Pandolfi, Camilla; Mancuso, Stefano; Caldarelli, Guido

    2016-06-07

    Despite the common misconception of nearly static organisms, plants do interact continuously with the environment and with each other. It is fair to assume that during their evolution they developed particular features to overcome similar problems and to exploit possibilities from environment. In this paper we introduce various quantitative measures based on recent advancements in complex network theory that allow to measure the effective similarities of various species. By using this approach on the similarity in fruit-typology ecological traits we obtain a clear plant classification in a way similar to traditional taxonomic classification. This result is not trivial, since a similar analysis done on the basis of diaspore morphological properties do not provide any clear parameter to classify plants species. Complex network theory can then be used in order to determine which feature amongst many can be used to distinguish scope and possibly evolution of plants. Future uses of this approach range from functional classification to quantitative determination of plant communities in nature.

  12. Networks of plants: how to measure similarity in vegetable species

    PubMed Central

    Vivaldo, Gianna; Masi, Elisa; Pandolfi, Camilla; Mancuso, Stefano; Caldarelli, Guido

    2016-01-01

    Despite the common misconception of nearly static organisms, plants do interact continuously with the environment and with each other. It is fair to assume that during their evolution they developed particular features to overcome similar problems and to exploit possibilities from environment. In this paper we introduce various quantitative measures based on recent advancements in complex network theory that allow to measure the effective similarities of various species. By using this approach on the similarity in fruit-typology ecological traits we obtain a clear plant classification in a way similar to traditional taxonomic classification. This result is not trivial, since a similar analysis done on the basis of diaspore morphological properties do not provide any clear parameter to classify plants species. Complex network theory can then be used in order to determine which feature amongst many can be used to distinguish scope and possibly evolution of plants. Future uses of this approach range from functional classification to quantitative determination of plant communities in nature. PMID:27271207

  13. Predicting the evolution of complex networks via similarity dynamics

    NASA Astrophysics Data System (ADS)

    Wu, Tao; Chen, Leiting; Zhong, Linfeng; Xian, Xingping

    2017-01-01

    Almost all real-world networks are subject to constant evolution, and plenty of them have been investigated empirically to uncover the underlying evolution mechanism. However, the evolution prediction of dynamic networks still remains a challenging problem. The crux of this matter is to estimate the future network links of dynamic networks. This paper studies the evolution prediction of dynamic networks with link prediction paradigm. To estimate the likelihood of the existence of links more accurate, an effective and robust similarity index is presented by exploiting network structure adaptively. Moreover, most of the existing link prediction methods do not make a clear distinction between future links and missing links. In order to predict the future links, the networks are regarded as dynamic systems in this paper, and a similarity updating method, spatial-temporal position drift model, is developed to simulate the evolutionary dynamics of node similarity. Then the updated similarities are used as input information for the future links' likelihood estimation. Extensive experiments on real-world networks suggest that the proposed similarity index performs better than baseline methods and the position drift model performs well for evolution prediction in real-world evolving networks.

  14. Minimal Orderings Revisited

    SciTech Connect

    Peyton, B.W.

    1999-07-01

    When minimum orderings proved too difficult to deal with, Rose, Tarjan, and Leuker instead studied minimal orderings and how to compute them (Algorithmic aspects of vertex elimination on graphs, SIAM J. Comput., 5:266-283, 1976). This paper introduces an algorithm that is capable of computing much better minimal orderings much more efficiently than the algorithm in Rose et al. The new insight is a way to use certain structures and concepts from modern sparse Cholesky solvers to re-express one of the basic results in Rose et al. The new algorithm begins with any initial ordering and then refines it until a minimal ordering is obtained. it is simple to obtain high-quality low-cost minimal orderings by using fill-reducing heuristic orderings as initial orderings for the algorithm. We examine several such initial orderings in some detail.

  15. Mass-independent isotope effects.

    PubMed

    Buchachenko, Anatoly L

    2013-02-28

    Three fundamental properties of atomic nuclei-mass, spin (and related magnetic moment), and volume-are the source of isotope effects. The mostly deserved and popular, with almost hundred-year history, is the mass-dependent isotope effect. The first mass-independent isotope effect which chemically discriminates isotopes by their nuclear spins and nuclear magnetic moments rather than by their masses was detected in 1976. It was named as the magnetic isotope effect because it is controlled by magnetic interaction, i.e., electron-nuclear hyperfine coupling in the paramagnetic species, the reaction intermediates. The effect follows from the universal physical property of chemical reactions to conserve angular momentum (spin) of electrons and nuclei. It is now detected for oxygen, silicon, sulfur, germanium, tin, mercury, magnesium, calcium, zinc, and uranium in a great variety of chemical and biochemical reactions including those of medical and ecological importance. Another mass-independent isotope effect was detected in 1983 as a deviation of isotopic distribution in reaction products from that which would be expected from the mass-dependent isotope effect. On the physical basis, it is in fact a mass-dependent effect, but it surprisingly results in isotope fractionation which is incompatible with that predicted by traditional mass-dependent effects. It is supposed to be a function of dynamic parameters of reaction and energy relaxation in excited states of products. The third, nuclear volume mass-independent isotope effect is detected in the high-resolution atomic and molecular spectra and in the extraction processes, but there are no unambiguous indications of its importance as an isotope fractionation factor in chemical reactions.

  16. Mid-space-independent deformable image registration.

    PubMed

    Aganj, Iman; Iglesias, Juan Eugenio; Reuter, Martin; Sabuncu, Mert Rory; Fischl, Bruce

    2017-02-24

    Aligning images in a mid-space is a common approach to ensuring that deformable image registration is symmetric - that it does not depend on the arbitrary ordering of the input images. The results are, however, generally dependent on the mathematical definition of the mid-space. In particular, the set of possible solutions is typically restricted by the constraints that are enforced on the transformations to prevent the mid-space from drifting too far from the native image spaces. The use of an implicit atlas has been proposed as an approach to mid-space image registration. In this work, we show that when the atlas is aligned to each image in the native image space, the data term of implicit-atlas-based deformable registration is inherently independent of the mid-space. In addition, we show that the regularization term can be reformulated independently of the mid-space as well. We derive a new symmetric cost function that only depends on the transformation morphing the images to each other, rather than to the atlas. This eliminates the need for anti-drift constraints, thereby expanding the space of allowable deformations. We provide an implementation scheme for the proposed framework, and validate it through diffeomorphic registration experiments on brain magnetic resonance images.

  17. Independence of replisomes in Escherichia coli chromosomalreplication

    SciTech Connect

    Breier, Adam M.; Weier, Heinz-Ulrich G.; Cozzarelli, Nicholas R.

    2005-03-13

    In Escherichia coli DNA replication is carried out by the coordinated action of the proteins within a replisome. After replication initiation, the two bidirectionally oriented replisomes from a single origin are colocalized into higher-order structures termed replication factories. The factory model postulated that the two replisomes are also functionally coupled. We tested this hypothesis by using DNA combing and whole-genome microarrays. Nascent DNA surrounding oriC in single, combed chromosomes showed instead that one replisome, usually the leftward one, was significantly ahead of the other 70% of the time. We next used microarrays to follow replication throughout the genome by measuring DNA copy number. We found in multiple E. coli strains that the replisomes are independent, with the leftward replisome ahead of the rightward one. The size of the bias was strain-specific, varying from 50 to 130 kb in the array results. When we artificially blocked one replisome, the other continued unabated, again demonstrating independence. We suggest an improved version of the factory model that retains the advantages of threading DNA through colocalized replisomes at about equal rates, but allows the cell flexibility to overcome obstacles encountered during elongation.

  18. Dimension-independent likelihood-informed MCMC

    SciTech Connect

    Cui, Tiangang; Law, Kody J. H.; Marzouk, Youssef M.

    2015-10-08

    Many Bayesian inference problems require exploring the posterior distribution of highdimensional parameters that represent the discretization of an underlying function. Our work introduces a family of Markov chain Monte Carlo (MCMC) samplers that can adapt to the particular structure of a posterior distribution over functions. There are two distinct lines of research that intersect in the methods we develop here. First, we introduce a general class of operator-weighted proposal distributions that are well defined on function space, such that the performance of the resulting MCMC samplers is independent of the discretization of the function. Second, by exploiting local Hessian information and any associated lowdimensional structure in the change from prior to posterior distributions, we develop an inhomogeneous discretization scheme for the Langevin stochastic differential equation that yields operator-weighted proposals adapted to the non-Gaussian structure of the posterior. The resulting dimension-independent and likelihood-informed (DILI) MCMC samplers may be useful for a large class of high-dimensional problems where the target probability measure has a density with respect to a Gaussian reference measure. Finally, we use two nonlinear inverse problems in order to demonstrate the efficiency of these DILI samplers: an elliptic PDE coefficient inverse problem and path reconstruction in a conditioned diffusion.

  19. Dimension-independent likelihood-informed MCMC

    DOE PAGES

    Cui, Tiangang; Law, Kody J. H.; Marzouk, Youssef M.

    2015-10-08

    Many Bayesian inference problems require exploring the posterior distribution of highdimensional parameters that represent the discretization of an underlying function. Our work introduces a family of Markov chain Monte Carlo (MCMC) samplers that can adapt to the particular structure of a posterior distribution over functions. There are two distinct lines of research that intersect in the methods we develop here. First, we introduce a general class of operator-weighted proposal distributions that are well defined on function space, such that the performance of the resulting MCMC samplers is independent of the discretization of the function. Second, by exploiting local Hessian informationmore » and any associated lowdimensional structure in the change from prior to posterior distributions, we develop an inhomogeneous discretization scheme for the Langevin stochastic differential equation that yields operator-weighted proposals adapted to the non-Gaussian structure of the posterior. The resulting dimension-independent and likelihood-informed (DILI) MCMC samplers may be useful for a large class of high-dimensional problems where the target probability measure has a density with respect to a Gaussian reference measure. Finally, we use two nonlinear inverse problems in order to demonstrate the efficiency of these DILI samplers: an elliptic PDE coefficient inverse problem and path reconstruction in a conditioned diffusion.« less

  20. Radiography Facility - Building 239 Independent Validation Review

    SciTech Connect

    Altenbach, T J; Beaulieu, R A; Watson, J F; Wong, H J

    2010-02-02

    The purpose of this task was to perform an Independent Validation Review to evaluate the successful implementation and effectiveness of Safety Basis controls, including new and revised controls, to support the implementation of a new DSA/TSR for B239. This task addresses Milestone 2 of FY10 PEP 7.6.6. As the first IVR ever conducted on a LLNL nuclear facility, it was designated a pilot project. The review follows the outline developed for Milestone 1 of the PEP, which is based on the DOE Draft Guide for Performance of Independent Verification Review of Safety Basis Controls. A formal Safety Basis procedure will be developed later, based on the lessons learned with this pilot project. Note, this review is termed a ''Validation'' in order to be consistent with the PEP definition and address issues historically raised about verification mechanisms at LLNL. Validation is intended to confirm that implementing mechanisms realistically establish the ability of TSR LCO, administrative control or safety management program to accomplish its intended safety function and that the controls are being implemented. This effort should not, however, be confused with a compliance assessment against all relevant DOE requirements and national standards. Nor is it used as a vehicle to question the derivation of controls already approved by LSO unless a given TSR statement simply cannot be implemented as stated.

  1. Independent Component Analysis of Textures

    NASA Technical Reports Server (NTRS)

    Manduchi, Roberto; Portilla, Javier

    2000-01-01

    A common method for texture representation is to use the marginal probability densities over the outputs of a set of multi-orientation, multi-scale filters as a description of the texture. We propose a technique, based on Independent Components Analysis, for choosing the set of filters that yield the most informative marginals, meaning that the product over the marginals most closely approximates the joint probability density function of the filter outputs. The algorithm is implemented using a steerable filter space. Experiments involving both texture classification and synthesis show that compared to Principal Components Analysis, ICA provides superior performance for modeling of natural and synthetic textures.

  2. 29 CFR 1620.18 - Jobs performed under similar working conditions.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 29 Labor 4 2014-07-01 2014-07-01 false Jobs performed under similar working conditions. 1620.18... THE EQUAL PAY ACT § 1620.18 Jobs performed under similar working conditions. (a) In general. In order for the equal pay standard to apply, the jobs are required to be performed under similar...

  3. 29 CFR 1620.18 - Jobs performed under similar working conditions.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 29 Labor 4 2013-07-01 2013-07-01 false Jobs performed under similar working conditions. 1620.18... THE EQUAL PAY ACT § 1620.18 Jobs performed under similar working conditions. (a) In general. In order for the equal pay standard to apply, the jobs are required to be performed under similar...

  4. 29 CFR 1620.18 - Jobs performed under similar working conditions.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 29 Labor 4 2010-07-01 2010-07-01 false Jobs performed under similar working conditions. 1620.18... THE EQUAL PAY ACT § 1620.18 Jobs performed under similar working conditions. (a) In general. In order for the equal pay standard to apply, the jobs are required to be performed under similar...

  5. 29 CFR 1620.18 - Jobs performed under similar working conditions.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 29 Labor 4 2012-07-01 2012-07-01 false Jobs performed under similar working conditions. 1620.18... THE EQUAL PAY ACT § 1620.18 Jobs performed under similar working conditions. (a) In general. In order for the equal pay standard to apply, the jobs are required to be performed under similar...

  6. 29 CFR 1620.18 - Jobs performed under similar working conditions.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 29 Labor 4 2011-07-01 2011-07-01 false Jobs performed under similar working conditions. 1620.18... THE EQUAL PAY ACT § 1620.18 Jobs performed under similar working conditions. (a) In general. In order for the equal pay standard to apply, the jobs are required to be performed under similar...

  7. A Hard Look at Independent Study

    ERIC Educational Resources Information Center

    Wilson, Whitelaw

    1976-01-01

    Sparked by James P. Beckford's article, "Administering the Independent Study Program" (Independent School Bulletin, February 1974, p.57), the author supplemented his comments by addressing two major aspects of independent study. The first is the notion that independent study is an educational vehicle or tool and the second is how it fits in with a…

  8. A principle of similarity for nonlinear vibration absorbers

    NASA Astrophysics Data System (ADS)

    Habib, G.; Kerschen, G.

    2016-10-01

    This paper develops a principle of similarity for the design of a nonlinear absorber, the nonlinear tuned vibration absorber (NLTVA), attached to a nonlinear primary system. Specifically, for effective vibration mitigation, we show that the NLTVA should feature a nonlinearity possessing the same mathematical form as that of the primary system. A compact analytical formula for the nonlinear coefficient of the absorber is then derived. The formula, valid for any polynomial nonlinearity in the primary system, is found to depend only on the mass ratio and on the nonlinear coefficient of the primary system. When the primary system comprises several polynomial nonlinearities, we demonstrate that the NLTVA obeys a principle of additivity, i.e., each nonlinear coefficient can be calculated independently of the other nonlinear coefficients using the proposed formula.

  9. Self-similarity and scaling in forest communities

    PubMed Central

    Simini, Filippo; Anfodillo, Tommaso; Carrer, Marco; Banavar, Jayanth R.; Maritan, Amos

    2010-01-01

    Ecological communities exhibit pervasive patterns and interrelationships between size, abundance, and the availability of resources. We use scaling ideas to develop a unified, model-independent framework for understanding the distribution of tree sizes, their energy use, and spatial distribution in tropical forests. We demonstrate that the scaling of the tree crown at the individual level drives the forest structure when resources are fully used. Our predictions match perfectly with the scaling behavior of an exactly solvable self-similar model of a forest and are in good accord with empirical data. The range, over which pure power law behavior is observed, depends on the available amount of resources. The scaling framework can be used for assessing the effects of natural and anthropogenic disturbances on ecosystem structure and functionality. PMID:20375286

  10. Secured Independent Tools in Peritoneoscopy

    PubMed Central

    Davila, Fausto; Dominguez, Guillermo; Manolas, Panagiotis

    2010-01-01

    Background and Objectives: Secured independent tools are being introduced to aid in peritoneoscopy. We present a simple technique for anchoring instruments, powered lights, and micro machines through the abdominal wall. Methods: We used a laparoscopic trainer, micro alligator clips with one or two 2-0 nylon tails and cables for engines and lights. The above instruments were introduced via a 12-mm or 15-mm port. Clips were placed for traction, retraction and exposure, lights for illumination, and motors for potential work. A laparoscopy port closure or suture passer was introduced percutaneously to grab and extract the tails or cables outside of the simulated abdominal cavity. The engines and lights were powered by a direct electric current (DC) plugged into exteriorized cables. Results: We used 2 to 3 clips for each, and engines performed well. Conclusion: This basic simulation adds independent instruments, lights, and engines. We replaced cannulas with threads or cables in an attempt to limit the number of ports. This technique further opens the door for innovations in wired machines in laparoscopy, single-port laparoscopy, or natural orifice surgery. PMID:20932379

  11. ]Space Shuttle Independent Assessment Team

    NASA Technical Reports Server (NTRS)

    2000-01-01

    The Shuttle program is one of the most complex engineering activities undertaken anywhere in the world at the present time. The Space Shuttle Independent Assessment Team (SIAT) was chartered in September 1999 by NASA to provide an independent review of the Space Shuttle sub-systems and maintenance practices. During the period from October through December 1999, the team led by Dr. McDonald and comprised of NASA, contractor, and DOD experts reviewed NASA practices, Space Shuffle anomalies, as well as civilian and military aerospace experience. In performing the review, much of a very positive nature was observed by the SIAT, not the least of which was the skill and dedication of the workforce. It is in the unfortunate nature of this type of review that the very positive elements are either not mentioned or dwelt upon. This very complex program has undergone a massive change in structure in the last few years with the transition to a slimmed down, contractor-run operation, the Shuttle Flight Operations Contract (SFOC). This has been accomplished with significant cost savings and without a major incident. This report has identified significant problems that must be addressed to maintain an effective program. These problems are described in each of the Issues, Findings or Observations summarized, and unless noted, appear to be systemic in nature and not confined to any one Shuttle sub-system or element. Specifics are given in the body of the report, along with recommendations to improve the present systems.

  12. A topological similarity measure for proteins.

    PubMed

    Máté, Gabriell; Hofmann, Andreas; Wenzel, Nicolas; Heermann, Dieter W

    2014-04-01

    We introduce a new measure for assessing similarity among chemical structures, based on well-established computational-topology algorithms. We argue that although the method considers geometry, it is more than a mere geometric similarity measure, as it takes into account, on different geometric scales, the important topological features of the compared structures. We prove that our measure is rigorous and complies with the proper mathematical requirements. We validate the method through comparing different configurations of simple zinc finger proteins and present an application on ligands binding to membrane-proteINS extracted from the Directory of Useful Decoys: Enhanced database and corresponding decoys. This article is part of a Special Issue entitled: Viral membrane proteins - Channels for cellular networking.

  13. Relations between premise similarity and inductive strength.

    PubMed

    Heit, Evan; Feeney, Aidan

    2005-04-01

    According to the diversity principle, diverse evidence is strong evidence. There has been considerable evidence that people respect this principle in inductive reasoning. However, exceptions may be particularly informative. Medin, Coley, Storms, and Hayes (2003) introduced a relevance theory of inductive reasoning and used this theory to predict exceptions, including the nondiversity-by-property-reinforcement effect. A new experiment in which this phenomenon was investigated is reported here. Subjects made inductive strength judgments and similarity judgments for stimuli from Medin et al. (2003). The inductive strength judgments showed the same pattern as that in Medin et al. (2003); however, the similarity judgments suggested that the pattern should be interpreted as a diversity effect, rather than as a nondiversity effect. It is concluded that the evidence regarding the predicted nondiversity-by-property-reinforcement effect does not give distinctive support for relevance theory, although this theory does address other results.

  14. Selection of USSR foreign similarity regions

    NASA Technical Reports Server (NTRS)

    Disler, J. M. (Principal Investigator)

    1982-01-01

    The similarity regions in the United States and Canada were selected to parallel the conditions that affect labeling and classification accuracies in the U.S.S.R. indicator regions. In addition to climate, a significant condition that affects labeling and classification accuracies in the U.S.S.R. is the proportion of barley and wheat grown in a given region (based on sown areas). The following regions in the United States and Canada were determined to be similar to the U.S.S.R. indicator regions: (1) Montana agrophysical unit (APU) 104 corresponds to the Belorussia high barley region; (2) North Dakota and Minnesota APU 20 and secondary region southern Manitoba and Saskatchewan correspond to the Ural RSFSR barley and spring wheat region; (3) Montana APU 23 corresponds to he North Caucasus barley and winter wheat region. Selection criteria included climates, crop type, crop distribution, growth cycles, field sizes, and field shapes.

  15. Comparative Similarity in Branching Space-Times

    NASA Astrophysics Data System (ADS)

    Placek, Tomasz

    2010-12-01

    My aim in this paper is to investigate the notions of comparative similarity definable in the framework of branching space-times. A notion of this kind is required to give a rigorous Lewis-style semantics of space-time counterfactuals. In turn, the semantical analysis is needed to decide whether the recently proposed proofs of the non-locality of quantum mechanics are correct. From among the three notions of comparative similarity I select two which appear equally good as far as their intuitiveness and algebraic properties are concerned. However, the relations are not transitive, and thus cannot be used in the semantics proposed by Lewis (J. Philos. Log. 2:418-446, 1973), which requires transitivity. Yet they are adequate for the account of Lewis (J. Philos. Log. 10:217-234, 1981).

  16. Generative Models for Similarity-based Classification

    DTIC Science & Technology

    2007-01-01

    problem of estimating the class-conditional similarity probability models is solved by applying the maximum entropy principle, under the constraint that...model. The SDA class-conditional probability models have exponential form, because they are derived as the maximum entropy distribu- tions subject to...exist because the constraints are based on the data. As prescribed by Jaynes’ principle of maximum entropy [34], a unique class- conditional joint

  17. Quantification of Health by Scaling Similarity Judgments

    PubMed Central

    Arons, Alexander M. M.; Krabbe, Paul F. M.

    2014-01-01

    Objective A new methodology is introduced to scale health states on an interval scale based on similarity responses. It could be well suited for valuation of health states on specific regions of the health continuum that are problematic when applying conventional valuation techniques. These regions are the top-end, bottom-end, and states around ‘dead’. Methods Three samples of approximately 500 respondents were recruited via an online survey. Each sample received a different judgmental task in which similarity data were elicited for the top seven health states in the dementia quality of life instrument (DQI). These states were ‘111111’ (no problems on any domain) and six others with some problems (level 2) on one domain. The tasks presented two (dyads), three (triads), or four (quads) DQI health states. Similarity data were transformed into interval-level scales with metric and non-metric multidimensional scaling algorithms. The three response tasks were assessed for their feasibility and comprehension. Results In total 532, 469, and 509 respondents participated in the dyads, triads, and quads tasks respectively. After the scaling procedure, in all three response tasks, the best health state ‘111111’ was positioned at one end of the health-state continuum and state ‘111211’ was positioned at the other. The correlation between the metric scales ranged from 0.73 to 0.95, while the non-metric scales ranged from 0.76 to 1.00, indicating strong to near perfect associations. There were no apparent differences in the reported difficulty of the response tasks, but the triads had the highest number of drop-outs. Discussion Multidimensional scaling proved to be a feasible method to scale health-state similarity data. The dyads and especially the quads response tasks warrant further investigation, as these tasks provided the best indications of respondent comprehension. PMID:24586520

  18. Self-similar scalar field collapse

    NASA Astrophysics Data System (ADS)

    Banerjee, Narayan; Chakrabarti, Soumya

    2017-01-01

    A spherically symmetric collapsing scalar field model is discussed with a dissipative fluid which includes a heat flux. This vastly general matter distribution is analyzed at the expense of a high degree of symmetry in the space-time, that of conformal flatness and self-similarity. Indeed collapsing models terminating into a curvature singularity can be obtained. The formation of black holes or the occurrence of naked singularities depends on the initial collapsing profiles.

  19. First-order inflation

    SciTech Connect

    Kolb, E.W. Chicago Univ., IL . Enrico Fermi Inst.)

    1990-09-01

    In the original proposal, inflation occurred in the process of a strongly first-order phase transition. This model was soon demonstrated to be fatally flawed. Subsequent models for inflation involved phase transitions that were second-order, or perhaps weakly first-order; some even involved no phase transition at all. Recently the possibility of inflation during a strongly first-order phase transition has been revived. In this talk I will discuss some models for first-order inflation, and emphasize unique signatures that result in inflation is realized in a first-order transition. Before discussing first-order inflation, I will briefly review some of the history of inflation to demonstrate how first-order inflation differs from other models. 58 refs., 3 figs.

  20. ASDC Ordering Tool

    Atmospheric Science Data Center

    2017-02-08

    ... Ordering requires login , searching does not. Projects by science discipline: Aerosols | Clouds | Radiation Budget ... Tropospheric Composition | Field Campaigns All projects Details:  ASDC Ordering Tool ...

  1. ASYMPTOTIC SELF-SIMILAR SOLUTIONS WITH A CHARACTERISTIC TIMESCALE

    SciTech Connect

    Waxman, Eli; Shvarts, Dov

    2010-10-01

    For a wide variety of initial and boundary conditions, adiabatic one-dimensional flows of an ideal gas approach self-similar behavior when the characteristic length scale over which the flow takes place, R, diverges or tends to zero. It is commonly assumed that self-similarity is approached since in the R {yields} {infinity}(0) limit the flow becomes independent of any characteristic length or timescales. In this case, the flow fields f(r, t) must be of the form f(r,t)=t{sup {alpha}}{sub f}F(r/R) with R {proportional_to} ({+-}t){sup {alpha}}. We show that requiring the asymptotic flow to be independent only of characteristic length scales implies a more general form of self-similar solutions, f(r,t)=R{sup {delta}}{sub f}F(r/R) with R-dot {proportional_to}R{sup {delta}}, which includes the exponential ({delta} = 1) solutions, R {proportional_to} e {sup t/{tau}}. We demonstrate that the latter, less restrictive, requirement is the physically relevant one by showing that the asymptotic behavior of accelerating blast waves, driven by the release of energy at the center of a cold gas sphere of initial density {rho} {proportional_to} r {sup -{omega}}, changes its character at large {omega}: the flow is described by 0 {<=} {delta} < 1, R {proportional_to} t {sup 1/(1-{delta})}, solutions for {omega} < {omega}{sub c}, by {delta}>1 solutions with R {proportional_to} (-t){sup 1/({delta}-1)} diverging at finite time (t = 0) for {omega}>{omega}{sub c}, and by exponential solutions for {omega} = {omega}{sub c} ({omega}{sub c} depends on the adiabatic index of the gas, {omega}{sub c} {approx} 8 for 4/3 < {gamma} < 5/3). The properties of the new solutions obtained here for {omega} {>=} {omega}{sub c} are analyzed, and self-similar solutions describing the t>0 behavior for {omega}>{omega}{sub c} are also derived.

  2. Wind Turbine Experiments at Full Dynamic Similarity

    NASA Astrophysics Data System (ADS)

    Miller, Mark; Kiefer, Janik; Westergaard, Carsten; Hultmark, Marcus

    2015-11-01

    Performing experiments with scaled-down wind turbines has traditionally been difficult due to the matching requirements of the two driving non-dimensional parameters, the Tip Speed Ratio (TSR) and the Reynolds number. Typically, full-size turbines must be used to provide the baseline cases for engineering models and computer simulations where flow similarity is required. We present a new approach to investigating wind turbine aerodynamics at full dynamic similarity by employing a high-pressure wind tunnel at Princeton University known as the High Reynolds number Test Facility (or HRTF). This facility allows for Reynolds numbers of up to 3 million (based on chord and velocity at the tip) while still matching the TSR, on a geometrically similar, small-scale model. The background development of this project is briefly presented including the design and manufacture of a model turbine. Following this the power, thrust and wake data are discussed, in particular the scaling dependence on the Reynolds number. Supported under NSF grant CBET-1435254 (program manager Gregory Rorrer).

  3. SEROLOGICAL SIMILARITY OF FLAGELLAR AND MITOTIC MICROTUBULES

    PubMed Central

    Fulton, Chandler; Kane, R. E.; Stephens, R. E.

    1971-01-01

    An antiserum to flagellar axonemes from sperm of Arbacia punctulata contains antibodies which react both with intact flagellar outer fibers and with purified tubulin from the outer fibers. Immunodiffusion tests indicate the presence of similar antigenic determinants on outer-fiber tubulins from sperm flagella of five species of sea urchins and a sand dollar, but not a starfish. The antibodies also react with extracts containing tubulins from different classes of microtubules, including central-pair fibers and both A- and B-subfibers from outer fibers of sperm flagella, an extract from unfertilized eggs, mitotic apparatuses from first cleavage embryos, and cilia from later embryos. Though most tubulins tested share similar antigenic determinants, some clear differences have been detected, even, in Pseudoboletia indiana, between the outer-fiber tubulins of sperm flagella and blastular cilia. Though tubulins are "actin-like" proteins, antitubulin serum does not react with actin from sea urchin lantern muscle. On the basis of these observations, we suggest that various echinoid microtubules are built of similar, but not identical, tubulins. PMID:4106543

  4. Effects of similarity on environmental context cueing.

    PubMed

    Smith, Steven M; Handy, Justin D; Angello, Genna; Manzano, Isabel

    2014-01-01

    Three experiments examined the prediction that context cues which are similar to study contexts can facilitate episodic recall, even if those cues are never seen before the recall test. Environmental context cueing effects have typically produced such small effect sizes that influences of moderating factors, such as the similarity between encoding and retrieval contexts, would be difficult to observe experimentally. Videos of environmental contexts, however, can be used to produce powerful context-dependent memory effects, particularly when only one memory target is associated with each video context, intentional item-context encoding is encouraged, and free recall tests are used. Experiment 1 showed that a not previously viewed video of the study context provided an effective recall cue, although it was not as effective as the originally viewed video context. Experiments 2 and 3 showed that videos of environments that were conceptually similar to encoding contexts (e.g., both were videos of ball field games) also cued recall, but not as well if the encoding contexts were given specific labels (e.g., "home run") incompatible with test contexts (e.g., a soccer scene). A fourth experiment that used incidental item-context encoding showed that video context reinstatement has a robust effect on paired associate memory, indicating that the video context reinstatement effect does not depend on interactive item-context encoding or free recall testing.

  5. Does language about similarity play a role in fostering similarity comparison in children?

    PubMed

    Ozçalişkan, Seyda; Goldin-Meadow, Susan; Gentner, Dedre; Mylander, Carolyn

    2009-08-01

    Commenting on perceptual similarities between objects stands out as an important linguistic achievement, one that may pave the way towards noticing and commenting on more abstract relational commonalities between objects. To explore whether having a conventional linguistic system is necessary for children to comment on different types of similarity comparisons, we observed four children who had not been exposed to usable linguistic input--deaf children whose hearing losses prevented them from learning spoken language and whose hearing parents had not exposed them to sign language. These children developed gesture systems that have language-like structure at many different levels. Here we ask whether the deaf children used their gestures to comment on similarity relations and, if so, which types of relations they expressed. We found that all four deaf children were able to use their gestures to express similarity comparisons (point to cat+point to tiger) resembling those conveyed by 40 hearing children in early gesture+speech combinations (cat+point to tiger). However, the two groups diverged at later ages. Hearing children, after acquiring the word like, shifted from primarily expressing global similarity (as in cat/tiger) to primarily expressing single-property similarity (as in crayon is brown like my hair). In contrast, the deaf children, lacking an explicit term for similarity, continued to primarily express global similarity. The findings underscore the robustness of similarity comparisons in human communication, but also highlight the importance of conventional terms for comparison as likely contributors to routinely expressing more focused similarity relations.

  6. A Statistical Model of Protein Sequence Similarity and Function Similarity Reveals Overly-Specific Function Predictions

    PubMed Central

    Kolker, Eugene

    2009-01-01

    Background Predicting protein function from primary sequence is an important open problem in modern biology. Not only are there many thousands of proteins of unknown function, current approaches for predicting function must be improved upon. One problem in particular is overly-specific function predictions which we address here with a new statistical model of the relationship between protein sequence similarity and protein function similarity. Methodology Our statistical model is based on sets of proteins with experimentally validated functions and numeric measures of function specificity and function similarity derived from the Gene Ontology. The model predicts the similarity of function between two proteins given their amino acid sequence similarity measured by statistics from the BLAST sequence alignment algorithm. A novel aspect of our model is that it predicts the degree of function similarity shared between two proteins over a continuous range of sequence similarity, facilitating prediction of function with an appropriate level of specificity. Significance Our model shows nearly exact function similarity for proteins with high sequence similarity (bit score >244.7, e-value >1e−62, non-redundant NCBI protein database (NRDB)) and only small likelihood of specific function match for proteins with low sequence similarity (bit score <54.6, e-value <1e−05, NRDB). For sequence similarity ranges in between our annotation model shows an increasing relationship between function similarity and sequence similarity, but with considerable variability. We applied the model to a large set of proteins of unknown function, and predicted functions for thousands of these proteins ranging from general to very specific. We also applied the model to a data set of proteins with previously assigned, specific functions that were electronically based. We show that, on average, these prior function predictions are more specific (quite possibly overly-specific) compared to

  7. Graviton propagator from background-independent quantum gravity.

    PubMed

    Rovelli, Carlo

    2006-10-13

    We study the graviton propagator in Euclidean loop quantum gravity. We use spin foam, boundary-amplitude, and group-field-theory techniques. We compute a component of the propagator to first order, under some approximations, obtaining the correct large-distance behavior. This indicates a way for deriving conventional spacetime quantities from a background-independent theory.

  8. Tsunamis and meteorological tsunamis: similarities and differences

    NASA Astrophysics Data System (ADS)

    Rabinovich, A. B.; Monserrat, S.

    2003-04-01

    Destructive seiche oscillations occasionally generated in certain bays and inlets are mainly associated with two natural forcing phenomena: Seismic activity (tsunamis), and atmospheric disturbances (meteotsunamis). Despite their different origin, both types are modified and amplified by topography in a similar way and produce similar catastrophic effects in coastal areas. Due to these similarities, it is often difficult to distinguish between these two phenomena without knowing the exact source characteristics. Recognition and separation of these phenomena is important for the revision/improvement of existing tsunami catalogues but also to better understand the generation mechanism and mitigate their possible catastrophic effects. To investigate this problem and to compare seismic and meteorological tsunamis, we assembled a number of cases when both phenomena had been recorded at the same place. In particular, our findings included Alicante (Mediterranean coast of Spain), Malokurilsk and Krabovaya bays (Shikotan Island, Russia), and Tofino, Winter Harbour, Bamfield, Port Hardy, and Victoria (British Columbia, Canada). We also used the results of the LAST-97 hydrophysical experiment when eight bottom pressure stations were deployed on the shelf and in the inlets of Menorca Island (Western Meditterranean, Spain) and three precise microbarographs were working on the coast. Our analysis is based on the assumption that both tsunamis and meteotsunamis are formed by the combined effects of external forcing and topography. So, for different events recorded at the same site, the similarities are related to topography and the differences to the forcing. On the contrary, for the same event recorded at different stations, similarities are mainly associated with the forcing and the differences with specific local topographic features. Analysis of the spectral distributions and comparison with background noise enabled us to reconstruct the topographic transfer functions for all

  9. Structural preferential attachment: Stochastic process for the growth of scale-free, modular, and self-similar systems

    NASA Astrophysics Data System (ADS)

    Hébert-Dufresne, Laurent; Allard, Antoine; Marceau, Vincent; Noël, Pierre-André; Dubé, Louis J.

    2012-02-01

    Many complex systems have been shown to share universal properties of organization, such as scale independence, modularity, and self-similarity. We borrow tools from statistical physics in order to study structural preferential attachment (SPA), a recently proposed growth principle for the emergence of the aforementioned properties. We study the corresponding stochastic process in terms of its time evolution, its asymptotic behavior, and the scaling properties of its statistical steady state. Moreover, approximations are introduced to facilitate the modeling of real systems, mainly complex networks, using SPA. Finally, we investigate a particular behavior observed in the stochastic process, the peloton dynamics, and show how it predicts some features of real growing systems using prose samples as an example.

  10. Independent design review report for truck {number_sign}1 modifications for flammable gas tanks

    SciTech Connect

    Wilson, G.W.

    1997-05-09

    The East and West Tank Farm Standing Order 97-01 requires that the PMST be modified to include purging of the enclosed space underneath the shielded receiver weather cover per National Fire Protection Association (NFPA) 496, Purged and Pressurized Enclosures for Electrical Equipment. The Standing Order also requires that the PMST be modified by replacing the existing electrical remote latch (RLU) unit with a mechanical remote latch unit. As the mechanical remote latch unit was exactly like the RLU installed on the Rotary Mode Core Sampler Trucks (RMCST) and the design for the RMCST went through formal design review, replacing the RLU was done utilizing informal design verification and was completed per work package ES-97-0028. As the weather cover purge was similar to the design for the RMCSTS, this design was reviewed using the independent review method with multiple independent reviewers. A function design criteria (WHC-SD-WM-FDC-048, Functional Design Criteria for Core Sampling in Flammable Gas Watch List Tanks) provided the criteria for the modifications. The review consisted of distributing the design review package to the reviewers and collecting and dispositioning the RCR comments. The review package included the ECNs for review, the Design Compliance Matrix, copies of all drawings affected, and copies of outstanding ECNs against these drawings. A final meeting was held to ensure that all reviewers were aware of the changes to ECNs from incorporation of RCR comments.

  11. Scale independence of décollement thrusting

    USGS Publications Warehouse

    McBride, John H.; Pugin, Andre J.M.; Hatcher, Robert D.

    2007-01-01

    Orogen-scale décollements (detachment surfaces) are an enduring subject of investigation by geoscientists. Uncertainties remain as to how crustal convergence processes maintain the stresses necessary for development of low-angle fault surfaces above which huge slabs of rock are transported horizontally for tens to hundreds of kilometers. Seismic reflection profiles from the southern Appalachian crystalline core and several foreland fold-and-thrust belts provide useful comparisons with high-resolution shallow-penetration seismic reflection profiles acquired over the frontal zone of the Michigan lobe of the Wisconsinan ice sheet northwest of Chicago, Illinois. These profiles provide images of subhorizontal and overlapping dipping reflections that reveal a ramp-and-flat thrust system developed in poorly consolidated glacial till. The system is rooted in a master décollement at the top of bedrock. These 2–3 km long images contain analogs of images observed in seismic reflection profiles from orogenic belts, except that the scale of observation in the profiles in glacial materials is two orders of magnitude less. Whereas the décollement beneath the ice lobe thrust belt lies ∼70 m below thrusted anticlines having wavelengths of tens of meters driven by an advancing ice sheet, seismic images from overthrust terranes are related to lithospheric convergence that produces décollements traceable for thousands of kilometers at depths ranging from a few to over 10 km. Dual vergence or reversals in vergence (retrocharriage) that developed over abrupt changes in depth to the décollement can be observed at all scales. The strikingly similar images, despite the contrast in scale and driving mechanism, suggest a scale- and driving mechanism–independent behavior for décollement thrust systems. All these systems initially had the mechanical properties needed to produce very similar geometries with a compressional driving mechanism directed subparallel to Earth's surface

  12. Spherulite Similar Structures in Amorphous Polymers,

    DTIC Science & Technology

    1987-10-30

    to PMIF’ solutions as nucleating agents 6.05Y. polyethyleneadipinate, and to the solution of WK we add 0.05. gutta percha . Evaporation of the solvent ...formed super molecular structures can be formed with very slow evaporation of the solvent . For this purpose we used vials with polished stoppers, which...structures indicate the absence of cr.ystalline reflexes. The macro ordering disappears at 170-180 ° and during the action of solvents (acetone

  13. Symbols of a cosmic order

    NASA Astrophysics Data System (ADS)

    Madjid, F. Hadi; Myers, John M.

    2016-10-01

    The world runs on networks over which signals communicate sequences of symbols, e.g. numerals. Examining both engineered and natural communications networks reveals an unsuspected order that depends on contact with an unpredictable entity. This order has three roots. The first is a proof within quantum theory that no evidence can ever determine its explanation, so that an agent choosing an explanation must do so unpredictably. The second root is the showing that clocks that step computers do not "tell time" but serve as self-adjusting symbol-handling agents that regulate "logically synchronized" motion in response to unpredictable disturbances. Such a clock-agent has a certain independence as well as the capacity to communicate via unpredictable symbols with other clock-agents and to adjust its own tick rate in response to that communication. The third root is the noticing of unpredictable symbol exchange in natural systems, including the transmission of symbols found in molecular biology. We introduce a symbol-handling agent as a role played in some cases by a person, for example a physicist who chooses an explanation of given experimental outcomes, and in other cases by some other biological entity, and in still other cases by an inanimate device, such as a computer-based detector used in physical measurements. While we forbear to try to explain the propensity of agents at all levels from cells to civilizations to form and operate networks of logically synchronized symbol-handling agents, we point to this propensity as an overlooked cosmic order, an order structured by the unpredictability ensuing from the proof. Appreciating the cosmic order leads to a conception of agency that replaces volition by unpredictability and reconceives the notion of objectivity in a way that makes a place for agency in the world as described by physics. Some specific implications for physics are outlined.

  14. Similarities between decapod and insect neuropeptidomes.

    PubMed

    Veenstra, Jan A

    2016-01-01

    Background. Neuropeptides are important regulators of physiological processes and behavior. Although they tend to be generally well conserved, recent results using trancriptome sequencing on decapod crustaceans give the impression of significant differences between species, raising the question whether such differences are real or artefacts. Methods. The BLAST+ program was used to find short reads coding neuropeptides and neurohormons in publicly available short read archives. Such reads were then used to find similar reads in the same archives, and the DNA assembly program Trinity was employed to construct contigs encoding the neuropeptide precursors as completely as possible. Results. The seven decapod species analyzed in this fashion, the crabs Eriocheir sinensis, Carcinus maenas and Scylla paramamosain, the shrimp Litopenaeus vannamei, the lobster Homarus americanus, the fresh water prawn Macrobrachium rosenbergii and the crayfish Procambarus clarkii had remarkably similar neuropeptidomes. Although some neuropeptide precursors could not be assembled, in many cases individual reads pertaining to the missing precursors show unambiguously that these neuropeptides are present in these species. In other cases, the tissues that express those neuropeptides were not used in the construction of the cDNA libraries. One novel neuropeptide was identified: elongated PDH (pigment dispersing hormone), a variation on PDH that has a two-amino-acid insertion in its core sequence. Hyrg is another peptide that is ubiquitously present in decapods and is likely a novel neuropeptide precursor. Discussion. Many insect species have lost one or more neuropeptide genes, but apart from elongated PDH and hyrg all other decapod neuropeptides are present in at least some insect species, and allatotropin is the only insect neuropeptide missing from decapods. This strong similarity between insect and decapod neuropeptidomes makes it possible to predict the receptors for decapod neuropeptides

  15. Similarities between decapod and insect neuropeptidomes

    PubMed Central

    2016-01-01

    Background. Neuropeptides are important regulators of physiological processes and behavior. Although they tend to be generally well conserved, recent results using trancriptome sequencing on decapod crustaceans give the impression of significant differences between species, raising the question whether such differences are real or artefacts. Methods. The BLAST+ program was used to find short reads coding neuropeptides and neurohormons in publicly available short read archives. Such reads were then used to find similar reads in the same archives, and the DNA assembly program Trinity was employed to construct contigs encoding the neuropeptide precursors as completely as possible. Results. The seven decapod species analyzed in this fashion, the crabs Eriocheir sinensis, Carcinus maenas and Scylla paramamosain, the shrimp Litopenaeus vannamei, the lobster Homarus americanus, the fresh water prawn Macrobrachium rosenbergii and the crayfish Procambarus clarkii had remarkably similar neuropeptidomes. Although some neuropeptide precursors could not be assembled, in many cases individual reads pertaining to the missing precursors show unambiguously that these neuropeptides are present in these species. In other cases, the tissues that express those neuropeptides were not used in the construction of the cDNA libraries. One novel neuropeptide was identified: elongated PDH (pigment dispersing hormone), a variation on PDH that has a two-amino-acid insertion in its core sequence. Hyrg is another peptide that is ubiquitously present in decapods and is likely a novel neuropeptide precursor. Discussion. Many insect species have lost one or more neuropeptide genes, but apart from elongated PDH and hyrg all other decapod neuropeptides are present in at least some insect species, and allatotropin is the only insect neuropeptide missing from decapods. This strong similarity between insect and decapod neuropeptidomes makes it possible to predict the receptors for decapod neuropeptides

  16. Diverse precerebellar neurons share similar intrinsic excitability

    PubMed Central

    Kolkman, Kristine E.; McElvain, Lauren E.; du Lac, Sascha

    2011-01-01

    The cerebellum dedicates a majority of the brain’s neurons to processing a wide range of sensory, motor, and cognitive signals. Stereotyped circuitry within the cerebellar cortex suggests that similar computations are performed throughout the cerebellum, but little is known about whether diverse precerebellar neurons are specialized for the nature of the information they convey. In vivo recordings indicate that firing responses to sensory or motor stimuli vary dramatically across different precerebellar nuclei, but whether this reflects diverse synaptic inputs or differentially tuned intrinsic excitability has not been determined. We targeted whole-cell patch clamp recordings to neurons in 8 precerebellar nuclei which were retrogradely labeled from different regions of the cerebellum in mice. Intrinsic physiology was compared across neurons in the medial vestibular, external cuneate, lateral reticular, prepositus hypoglossi, supragenual, Roller/intercalatus, reticularis tegmenti pontis (NRTP), and pontine nuclei. Within the firing domain, precerebellar neurons were remarkably similar. Firing faithfully followed temporally modulated inputs, could be sustained at high rates, and was a linear function of input current over a wide range of inputs and firing rates. Pharmacological analyses revealed common expression of Kv3 currents, which were essential for a wide linear firing range, and of SK currents, which were essential for a wide linear input range. In contrast, membrane properties below spike threshold varied considerably within and across precerebellar nuclei, as evidenced by variability in postinhibitory rebound firing. Our findings indicate that diverse precerebellar neurons perfom similar scaling computations on their inputs but may be differentially tuned to synaptic inhibition. PMID:22090493

  17. Similar on the Inside (post-grinding)

    NASA Technical Reports Server (NTRS)

    2004-01-01

    This approximate true-color image taken by the panoramic camera on the Mars Exploration Rover Opportunity show the hole drilled into the rock called 'Pilbara,' which is located in the small crater dubbed 'Fram.' Spirit drilled into this rock with its rock abrasion tool. The rock appears to be dotted with the same 'blueberries,' or spherules, found at 'Eagle Crater.' After analyzing the hole with the rover's scientific instruments, scientists concluded that Pilbara has a similar chemical make-up, and thus watery past, to rocks studied at Eagle Crater. This image was taken with the panoramic camera's 480-, 530- and 600-nanometer filters.

  18. Similar on the Inside (pre-grinding)

    NASA Technical Reports Server (NTRS)

    2004-01-01

    This approximate true-color image taken by the panoramic camera on the Mars Exploration Rover Opportunity show the rock called 'Pilbara' located in the small crater dubbed 'Fram.' The rock appears to be dotted with the same 'blueberries,' or spherules, found at 'Eagle Crater.' Spirit drilled into this rock with its rock abrasion tool. After analyzing the hole with the rover's scientific instruments, scientists concluded that Pilbara has a similar chemical make-up, and thus watery past, to rocks studied at Eagle Crater. This image was taken with the panoramic camera's 480-, 530- and 600-nanometer filters.

  19. Self-similar solutions for a nonlinear radiation diffusion equation

    SciTech Connect

    Garnier, Josselin; Malinie, Guy; Saillard, Yves; Cherfils-Clerouin, Catherine

    2006-09-15

    This paper considers the hydrodynamic equations with nonlinear conduction when the internal energy and the opacity have power-law dependences in the density and in the temperature. This system models the situation in which a dense solid is brought into contact with a thermal bath. It supports self-similar solutions that depend on the surface temperature. The self-similar solution can exhibit a shock wave followed by an ablation front if the surface temperature does not increase too fast in time, but it can exhibit a heat front followed by an isothermal shock otherwise. These flows are carefully studied in order to clarify the role of the initial solid density in the energy absorption and the ablation process. Comparisons with numerical simulations show excellent agreement.

  20. Desert ecosystems: similarities, characteristics, and health benefits.

    PubMed

    Carpio-Obeso, M P; Shorr, M; Valdez-Salas, B

    1999-01-01

    Salty bodies of water in desert zones are known worldwide. The Salton Sea in California, USA, and the Dead Sea between Israel and Jordan are located in arid areas at approximately the same latitude, which might explain some similarities. Both the Salton and Dead Seas have ecosystems consisting of a singular saline sea/hot desert interface. The Salton Sea, the largest inland body of water in California, is a saline lake in the Coachella and Imperial Valleys. The Imperial Valley is one of the 10 top agricultural areas in the United States. Several thermoelectric plants exploiting geothermal wells operate around the Salton Sea, and some areas comprise a National Wildlife Refuge. The Dead Sea (Sea of Salt in Hebrew), the lowest saline lake on earth, contains high concentrations of salts and is a reservoir of minerals with a unique evaporation regime. The Dead Sea salts are the raw materials for the production of several chemical and health products. Magnesium salts and sulfur-containing mud are used for treating human skin disorders, allergies, arthritis, and respiratory diseases. After visiting both zones, we recorded, analyzed, and compared the similarities and differences between the areas. Some differences were found in the geographic, orographic, hydraulic, and climatic properties, but the main difference is in the economic-industrial aspect. The characteristics and health aspects are described in this report.

  1. Exploiting Data Similarity to Reduce Memory Footprints

    SciTech Connect

    Biswas, S; de Supinski, B R; Schulz, M; Franklin, D; Sherwood, T; Chong, F T

    2011-01-28

    Memory size has long limited large-scale applications on high-performance computing (HPC) systems. Since compute nodes frequently do not have swap space, physical memory often limits problem sizes. Increasing core counts per chip and power density constraints, which limit the number of DIMMs per node, have exacerbated this problem. Further, DRAM constitutes a significant portion of overall HPC system cost. Therefore, instead of adding more DRAM to the nodes, mechanisms to manage memory usage more efficiently - preferably transparently - could increase effective DRAM capacity and thus the benefit of multicore nodes for HPC systems. MPI application processes often exhibit significant data similarity. These data regions occupy multiple physical locations across the individual rank processes within a multicore node and thus offer a potential savings in memory capacity. These regions, primarily residing in heap, are dynamic, which makes them difficult to manage statically. Our novel memory allocation library, SBLLmalloc, automatically identifies identical memory blocks and merges them into a single copy. SBLLmalloc does not require application or OS changes since we implement it as a user-level library. Overall, we demonstrate that SBLLmalloc reduces the memory footprint of a range of MPI applications by 32.03% on average and up to 60.87%. Further, SBLLmalloc supports problem sizes for IRS over 21.36% larger than using standard memory management techniques, thus significantly increasing effective system size. Similarly, SBLLmalloc requires 43.75% fewer nodes than standard memory management techniques to solve an AMG problem.

  2. Topological similarity of random cell complexes and applications

    NASA Astrophysics Data System (ADS)

    Schweinhart, B.; Mason, J. K.; MacPherson, R. D.

    2016-06-01

    Although random cell complexes occur throughout the physical sciences, there does not appear to be a standard way to quantify their statistical similarities and differences. The various proposals in the literature are usually motivated by the analysis of particular physical systems and do not necessarily apply to general situations. The central concepts in this paper—the swatch and the cloth—provide a description of the local topology of a cell complex that is general (any physical system that can be represented as a cell complex is admissible) and complete (any statistical question about the local topology can be answered from the cloth). Furthermore, this approach allows a distance to be defined that measures the similarity of the local topology of two cell complexes. The distance is used to identify a steady state of a model grain boundary network, quantify the approach to this steady state, and show that the steady state is independent of the initial conditions. The same distance is then employed to show that the long-term properties in simulations of a specific model of a dislocation network do not depend on the implementation of dislocation intersections.

  3. Examination of crime and similar concepts in the medical law

    PubMed Central

    Fathi, Mohammad Javad

    2016-01-01

    Crime is a human behavior that has captivated the thoughts of scholars of various disciplines throughout history. Philosophers, sociologists, psychologists and others have investigated and analyzed the concept of crime from different aspects. Crime is the main topic of criminal law, and in its legal meaning is a well-known term with a certain conceptual load that should not be confused with similar concepts such as guilt, civil crime (quasi tort), and particularly, the disciplinary transgression. Although crime has common points with all the above, it is an independent concept with unique effects, features, and descriptions that distinguish it from similar acts. This article aims to determine the difference between the concepts of crime, guilt, civil crime and disciplinary transgression through enumeration of the related issues as well as examples of medical disciplinary crimes and transgressions. Identifying and distinguishing these concepts can improve the procedure of prosecuting crimes and disciplinary transgression, bring punishment to criminals and transgressors, and facilitate compensation of pecuniary and non-pecuniary losses due to committers’ fault or failure. Thus we may avoid taking a wrong route that can lead to infringement of individuals’ rights. PMID:27471587

  4. Performance evaluation of similarity measures for dense multimodal stereovision

    NASA Astrophysics Data System (ADS)

    Yaman, Mustafa; Kalkan, Sinan

    2016-05-01

    Multimodal imaging systems have recently been drawing attention in fields such as medical imaging, remote sensing, and video surveillance systems. In such systems, estimating depth has become possible due to the promising progress of multimodal matching techniques. We perform a systematic performance evaluation of similarity measures frequently used in the literature for dense multimodal stereovision. The evaluated measures include mutual information (MI), sum of squared distances, normalized cross-correlation, census transform, local self-similarity (LSS) as well as descriptors adopted to multimodal settings, like scale invariant feature transform (SIFT), speeded-up robust features (SURF), histogram of oriented gradients (HOG), binary robust independent elementary features, and fast retina keypoint (FREAK). We evaluate the measures over datasets we generated, compiled, and provided as a benchmark and compare the performances using the Winner Takes All method. The datasets are (1) synthetically modified four popular pairs from the Middlebury Stereo Dataset (namely, Tsukuba, Venus, Cones, and Teddy) and (2) our own multimodal image pairs acquired using the infrared and the electro-optical cameras of a Kinect device. The results show that MI and HOG provide promising results for multimodal imagery, and FREAK, SURF, SIFT, and LSS can be considered as alternatives depending on the multimodality level and the computational complexity requirements of the intended application.

  5. Query-Dependent Banding (QDB) for Faster RNA Similarity Searches

    PubMed Central

    Nawrocki, Eric P; Eddy, Sean R

    2007-01-01

    When searching sequence databases for RNAs, it is desirable to score both primary sequence and RNA secondary structure similarity. Covariance models (CMs) are probabilistic models well-suited for RNA similarity search applications. However, the computational complexity of CM dynamic programming alignment algorithms has limited their practical application. Here we describe an acceleration method called query-dependent banding (QDB), which uses the probabilistic query CM to precalculate regions of the dynamic programming lattice that have negligible probability, independently of the target database. We have implemented QDB in the freely available Infernal software package. QDB reduces the average case time complexity of CM alignment from LN 2.4 to LN 1.3 for a query RNA of N residues and a target database of L residues, resulting in a 4-fold speedup for typical RNA queries. Combined with other improvements to Infernal, including informative mixture Dirichlet priors on model parameters, benchmarks also show increased sensitivity and specificity resulting from improved parameterization. PMID:17397253

  6. The continuous similarity model of bulk soil-water evaporation

    NASA Technical Reports Server (NTRS)

    Clapp, R. B.

    1983-01-01

    The continuous similarity model of evaporation is described. In it, evaporation is conceptualized as a two stage process. For an initially moist soil, evaporation is first climate limited, but later it becomes soil limited. During the latter stage, the evaporation rate is termed evaporability, and mathematically it is inversely proportional to the evaporation deficit. A functional approximation of the moisture distribution within the soil column is also included in the model. The model was tested using data from four experiments conducted near Phoenix, Arizona; and there was excellent agreement between the simulated and observed evaporation. The model also predicted the time of transition to the soil limited stage reasonably well. For one of the experiments, a third stage of evaporation, when vapor diffusion predominates, was observed. The occurrence of this stage was related to the decrease in moisture at the surface of the soil. The continuous similarity model does not account for vapor flow. The results show that climate, through the potential evaporation rate, has a strong influence on the time of transition to the soil limited stage. After this transition, however, bulk evaporation is independent of climate until the effects of vapor flow within the soil predominate.

  7. Scaling exponents for ordered maxima

    SciTech Connect

    Ben-Naim, E.; Krapivsky, P. L.; Lemons, N. W.

    2015-12-22

    We study extreme value statistics of multiple sequences of random variables. For each sequence with N variables, independently drawn from the same distribution, the running maximum is defined as the largest variable to date. We compare the running maxima of m independent sequences and investigate the probability SN that the maxima are perfectly ordered, that is, the running maximum of the first sequence is always larger than that of the second sequence, which is always larger than the running maximum of the third sequence, and so on. The probability SN is universal: it does not depend on the distribution from which the random variables are drawn. For two sequences, SN~N–1/2, and in general, the decay is algebraic, SN~N–σm, for large N. We analytically obtain the exponent σ3≅1.302931 as root of a transcendental equation. Moreover, the exponents σm grow with m, and we show that σm~m for large m.

  8. Scaling exponents for ordered maxima

    DOE PAGES

    Ben-Naim, E.; Krapivsky, P. L.; Lemons, N. W.

    2015-12-22

    We study extreme value statistics of multiple sequences of random variables. For each sequence with N variables, independently drawn from the same distribution, the running maximum is defined as the largest variable to date. We compare the running maxima of m independent sequences and investigate the probability SN that the maxima are perfectly ordered, that is, the running maximum of the first sequence is always larger than that of the second sequence, which is always larger than the running maximum of the third sequence, and so on. The probability SN is universal: it does not depend on the distribution frommore » which the random variables are drawn. For two sequences, SN~N–1/2, and in general, the decay is algebraic, SN~N–σm, for large N. We analytically obtain the exponent σ3≅1.302931 as root of a transcendental equation. Moreover, the exponents σm grow with m, and we show that σm~m for large m.« less

  9. Creating Birds of Similar Feathers: Leveraging Similarity to Improve Teacher-Student Relationships and Academic Achievement

    ERIC Educational Resources Information Center

    Gehlbach, Hunter; Brinkworth, Maureen E.; King, Aaron M.; Hsu, Laura M.; McIntyre, Joseph; Rogers, Todd

    2016-01-01

    When people perceive themselves as similar to others, greater liking and closer relationships typically result. In the first randomized field experiment that leverages actual similarities to improve real-world relationships, we examined the affiliations between 315 9th grade students and their 25 teachers. Students in the treatment condition…

  10. Similar Students, Different Choices: Who Uses a School Voucher in an Otherwise Similar Population of Students?

    ERIC Educational Resources Information Center

    Fleming, David J.; Cowen, Joshua M.; Witte, John F.; Wolf, Patrick J.

    2015-01-01

    We examine what factors predict why some parents enroll their children in voucher schools while other parents with similar types of children and from similar neighborhoods do not. Furthermore, we investigate how aware parents are of their educational options, where they get their information, and what school characteristics they deem the most…

  11. Adaptive Sampling for High Throughput Data Using Similarity Measures

    SciTech Connect

    Bulaevskaya, V.; Sales, A. P.

    2015-05-06

    The need for adaptive sampling arises in the context of high throughput data because the rates of data arrival are many orders of magnitude larger than the rates at which they can be analyzed. A very fast decision must therefore be made regarding the value of each incoming observation and its inclusion in the analysis. In this report we discuss one approach to adaptive sampling, based on the new data point’s similarity to the other data points being considered for inclusion. We present preliminary results for one real and one synthetic data set.

  12. Evolution of cooperation with similarity to an archetype.

    PubMed

    Houy, Nicolas

    2013-09-07

    We use the framework of Colman with a Prisoner's Dilemma game and an evolutionary agent-based algorithm in order to study the evolution of cooperation and discrimination. We assume that players can discriminate on the basis of the phenotypic distance to an archetype, linked itself with a given behaviour in the game. However, we do not impose that the archetype corresponds to a conditionally cooperative behaviour. We show that cooperation can become the norm and discrimination can evolve spontaneously with no other assumption. For some archetypes, cooperation can even evolve faster and with more intensity than in the similarity-based case studied in Colman et al., 2012.

  13. Multiple ordering in magnetite.

    NASA Technical Reports Server (NTRS)

    Cullen, J. R.; Callen, E. R.

    1973-01-01

    Results of a self-consistent band calculation of the ground-state energy and charge orderings based on a tight-binding scheme in magnetite are presented. They show that below a critical (about 2.2) value of the ratio of interatomic Coulomb energy to bandwidth the lowest energy state has no order. Between this critical value and 2.5, the preferred state is multiply ordered.

  14. Popularity, similarity, and the network extraversion bias.

    PubMed

    Feiler, Daniel C; Kleinbaum, Adam M

    2015-05-01

    Using the emergent friendship network of an incoming cohort of students in an M.B.A. program, we examined the role of extraversion in shaping social networks. Extraversion has two important implications for the emergence of network ties: a popularity effect, in which extraverts accumulate more friends than introverts do, and a homophily effect, in which the more similar are two people's levels of extraversion, the more likely they are to become friends. These effects result in a systematic network extraversion bias, in which people's social networks will tend to be overpopulated with extraverts and underpopulated with introverts. Moreover, the most extraverted people have the greatest network extraversion bias, and the most introverted people have the least network extraversion bias. Our finding that social networks were systematically misrepresentative of the broader social environment raises questions about whether there is a societal bias toward believing other people are more extraverted than they actually are and whether introverts are better socially calibrated than extraverts.

  15. Self-similar dynamics of bacterial chemotaxis

    NASA Astrophysics Data System (ADS)

    Ngamsaad, Waipot; Khompurngson, Kannika

    2012-12-01

    Colonies of bacteria grown on thin agar plate exhibit fractal patterns as a result of adaptation to their environments. The bacterial colony pattern formation is regulated crucially by chemotaxis, the movement of cells along a chemical concentration gradient. Here, the dynamics of pattern formation in a bacterial colony is investigated theoretically through a continuum model that considers chemotaxis. In the case of the gradient sensed by the bacterium is nearly uniform, the bacterial colony patterns are self-similar, which means they look the same at every scale. The scaling law of the bacterial colony growth has been revealed explicitly. Chemotaxis biases the movement of the bacterial population in colony to trend toward the chemical attractant. Moreover, the bacterial colonies evolve for a long time as the traveling wave with a sharp front.

  16. Developing networks play a similar melody.

    PubMed

    Ben-Ari, Y

    2001-06-01

    During development, when synapses start to be established, a primitive form of network-driven activity provides most of the synaptic activity. This pattern enables a high degree of synchrony in immature neurons in spite of the small number of functional synapses and could participate in activity-dependent growth and synapse formation. Relying on the giant depolarizing potentials that provide most of the synaptic activity in the developing hippocampus, this article reviews the common properties and generating mechanisms of these patterns, and particularly the role of the early depolarizing action of GABA(A) and glycine receptors and the sequential expression of GABA and glutamate synapses. Patterns similar to giant depolarizing potentials have been observed in a wide range of structures and species suggesting that there is a temporal template throughout evolution that constitutes an essential step in the formation of functional networks.

  17. [Generics: similarities, bioequivalence but no conformity].

    PubMed

    Even-Adin, D; De Muylder, J A; Sternon, J

    2002-01-01

    The using of generic forms (GF) is presented as a potential source of budgetary "saving of money" in the field of pharmaceutical expenses. Not frequently prescribed in Belgium, they win a new interest thanks to the recent making use of the "reference repayment". Sale's authorization of GF is controlled by european rules, but some questions about their identity to original medications remain. Do similarities based only upon qualitative and quantitative composition in active molecules, pharmaceutical forms and biodisponibility give us all requested guaranties? Several cases of discordances can appear; the major elements of non conformity are the nature of excipients, notice's contents and the value of biodisponibility studies. However, in term of economy, in the drug market, development of GF appears to constitute an unavoidable phenomenon.

  18. Generalized entropies and the similarity of texts

    NASA Astrophysics Data System (ADS)

    Altmann, Eduardo G.; Dias, Laércio; Gerlach, Martin

    2017-01-01

    We show how generalized Gibbs–Shannon entropies can provide new insights on the statistical properties of texts. The universal distribution of word frequencies (Zipf’s law) implies that the generalized entropies, computed at the word level, are dominated by words in a specific range of frequencies. Here we show that this is the case not only for the generalized entropies but also for the generalized (Jensen–Shannon) divergences, used to compute the similarity between different texts. This finding allows us to identify the contribution of specific words (and word frequencies) for the different generalized entropies and also to estimate the size of the databases needed to obtain a reliable estimation of the divergences. We test our results in large databases of books (from the google n-gram database) and scientific papers (indexed by Web of Science).

  19. Self-similar Relativisitic Disks revisted

    NASA Astrophysics Data System (ADS)

    Cai, M. J.; Shu, F. H.

    2001-05-01

    We revisit the rotating self-similar disk first studied by Lynden-Bell and Pineault and extend it to include pressure. A two-parameter family of solutions is constructed numerically. These disks are parameterized by the constant linear rotation velocity v, and the isothermal sound speed γ 1/2. For sufficiently high velocities, an ergo region develops in the form of the exterior of a cone. For each value of γ , there is a maximum velocity vc above which there is no equilibrium solutions. For this solution the frame dragging is infinite and the ergo cone closes on the rotation axis. The null geodesic equations are also integrated numerically. Due to the infinite extend and mass of the system, all photon trajectories are focused towards the disk. The behavior of equatorial photons orbits is qualitatively the same as that of cold disks.

  20. Kisspeptin Neurons from Mice to Men: Similarities and Differences

    PubMed Central

    Goodman, Robert L.

    2012-01-01

    The discovery that kisspeptin was critical for normal fertility in humans ushered in a new chapter in our understanding of the control of GnRH secretion. In this paper, we will review recent data on the similarities and differences across several mammalian species in the role of kisspeptin in reproductive neuroendocrinology. In all mammals examined to date, there is strong evidence that kisspeptin plays a key role in the onset of puberty and is necessary for both tonic and surge secretion of GnRH in adults, although kisspeptin-independent systems are also apparent in these studies. Similarly, two groups of kisspeptin neurons, one in the arcuate nucleus (ARC) and the other more rostrally, have been identified in all mammals, although the latter is concentrated in a limited area in rodents and more scattered in other species. Estrogen has divergent actions on kisspeptin expression in these two regions across these species, stimulating it the latter and inhibiting expression in the former. There is also strong evidence that the rostral population participates in the GnRH surge, whereas the ARC population contributes to steroid-negative feedback. There may be species differences in the role of these two populations in puberty, with the ARC cells important in rats, sheep, and monkeys, whereas both have been implicated in mice. ARC kisspeptin neurons also appear to participate in the GnRH surge in sheep and guinea pigs, whereas the data on this possibility in rodents are contradictory. Similarly, both populations are sexually dimorphic in sheep and humans, whereas most data in rodents indicate that this occurs only in the rostral population. The functional consequences of these species differences remain to be fully elucidated but are likely to have significance for understanding normal neuroendocrine control of reproduction as well as for use of kisspeptin agonists/antagonists as a therapeutic tool. PMID:22989628

  1. Generalized Similarity for Accretion/Decretion Disks

    NASA Astrophysics Data System (ADS)

    Rafikov, Roman R.

    2016-10-01

    Decretion (or external) disks are gas disks freely expanding to large radii due to their internal stresses. They are expected to naturally arise in tidal disruption events, around Be stars, in mass-losing post-main-sequence binaries, as a result of supernova fallback, etc. Their evolution is theoretically understood in two regimes: when the central object does not exert torque on the disk (a standard assumption for conventional accretion disks) or when no mass inflow (or outflow) occurs at the disk center. However, many astrophysical objects—circumbinary disks, Be stars, neutron stars accreting in a propeller regime, etc.—feature non-zero torque simultaneously with the non-zero accretion (or ejection of mass) at the disk center. We provide a general description for the evolution of such disks (both linear and nonlinear) in the self-similar regime, to which the disk should asymptotically converge with time. We identify a similarity parameter λ, which is uniquely related to the degree, to which the central mass accretion is suppressed by the non-zero central torque. The known decretion disk solutions correspond to the two discrete values of λ, while our new solutions cover a continuum of its physically allowed values, corresponding to either accretion or mass ejection by the central object. A direct relationship between λ and central \\dot{M} and torque is also established. We describe the time evolution of the various disk characteristics for different λ, and show that the observable properties (spectrum and luminosity evolution) of the decretion disks, in general, are different from the standard accretion disks with no central torque.

  2. Criterion for universality-class-independent critical fluctuations: example of the two-dimensional Ising model.

    PubMed

    Clusel, Maxime; Fortin, Jean-Yves; Holdsworth, Peter C W

    2004-10-01

    Order parameter fluctuations for the two-dimensional Ising model in the region of the critical temperature are presented. A locus of temperatures T(*) (L) and a locus of magnetic fields B(*) (L) are identified, for which the probability density function is similar to that for the two-dimensional XY model in the spin wave approximation. The characteristics of the fluctuations along these points are largely independent of universality class. We show that the largest range of fluctuations relative to the variance of the distribution occurs along these loci of points, rather than at the critical temperature itself and we discuss this observation in terms of intermittency. Our motivation is the identification of a generic form for fluctuations in correlated systems in accordance with recent experimental and numerical observations. We conclude that a universality-class-dependent form for the fluctuations is a particularity of critical phenomena related to the change in symmetry at a phase transition.

  3. Instrument independent diffuse reflectance spectroscopy.

    PubMed

    Yu, Bing; Fu, Henry L; Ramanujam, Nirmala

    2011-01-01

    Diffuse reflectance spectroscopy with a fiber optic probe is a powerful tool for quantitative tissue characterization and disease diagnosis. Significant systematic errors can arise in the measured reflectance spectra and thus in the derived tissue physiological and morphological parameters due to real-time instrument fluctuations. We demonstrate a novel fiber optic probe with real-time, self-calibration capability that can be used for UV-visible diffuse reflectance spectroscopy in biological tissue in clinical settings. The probe is tested in a number of synthetic liquid phantoms over a wide range of tissue optical properties for significant variations in source intensity fluctuations caused by instrument warm up and day-to-day drift. While the accuracy for extraction of absorber concentrations is comparable to that achieved with the traditional calibration (with a reflectance standard), the accuracy for extraction of reduced scattering coefficients is significantly improved with the self-calibration probe compared to traditional calibration. This technology could be used to achieve instrument-independent diffuse reflectance spectroscopy in vivo and obviate the need for instrument warm up and post∕premeasurement calibration, thus saving up to an hour of precious clinical time.

  4. Preprototype independent air revitalization subsystem

    NASA Technical Reports Server (NTRS)

    Schubert, F. H.; Hallick, T. M.; Woods, R. R.

    1982-01-01

    The performance and maturity of a preprototype, three-person capacity, automatically controlled and monitored, self-contained independent air revitalization subsystem were evaluated. The subsystem maintains the cabin partial pressure of oxygen at 22 kPa (3.2 psia) and that of carbon dioxide at 400 Pa (3 mm Hg) over a wide range of cabin air relative humidity conditions. Consumption of water vapor by the water vapor electrolysis module also provides partial humidity control of the cabin environment. During operation, the average carbon dioxide removal efficiency at baseline conditions remained constant throughout the test at 84%. The average electrochemical depolarized concentrator cell voltage at the end of the parametric/endurance test was 0.41 V, representing a very slowly decreasing average cell voltage. The average water vapor electrolysis cell voltage increased only at a rate of 20 mu/h from the initial level of 1.67 V to the final level of 1.69 V at conclusion of the testing.

  5. Independent Testing of JWST Detector Prototypes

    NASA Technical Reports Server (NTRS)

    Figer, Donald F.; Rauscher, Bernie J.; Regan, Michael W.; Morse, Ernie; Balleza, Jesus; Bergeron, Louis; Stockman, H. S.

    2004-01-01

    The Independent Detector Testing Laboratory (IDTL) is jointly operated by the Space Telescope Science Institute (STScI) and the Johns Hopkins University (JHU), and is assisting the James Webb Space Telescope (JWST) mission in choosing and operating the best near-infrared detectors. The JWST is the centerpiece of the NASA Office of Space Science theme, the Astronomical Search for Origins, and the highest priority astronomy project for the next decade, according to the National Academy of Science. JWST will need to have the sensitivity to see the first light in the Universe to determine how galaxies formed in the web of dark matter that existed when the Universe was in its infancy (z is approximately 10-20). To achieve this goal, the JWST Project must pursue an aggressive technology program and advance infrared detectors to performance levels beyond what is now possible. As part of this program, NASA has selected the IDTL to verify comparative performance between prototype JWST detectors developed by Rockwell Scientific (HgCdTe) and Raytheon (InSb). The IDTL is charged with obtaining an independent assessment of the ability of these two competing technologies to achieve the demanding specifications of the JWST program within the 0.6-5 micron bandpass and in an ultra-low background (less than 0.01 e(-)/s/pixel) environment. We describe results from the JWST Detector Characterization Project that is being performed in the LDTL. In this project, we are measuring first-order detector parameters, i.e. dark current, read noise, QE, intra-pixel sensitivity, linearity, as functions of temperature, well size, and operational mode.

  6. Independent Testing of JWST Detector Prototypes

    NASA Technical Reports Server (NTRS)

    Figer, D. F.; Rauscher, B. J.; Regan, M. W.; Balleza, J.; Bergeron, L.; Morse, E.; Stockman, H. S.

    2003-01-01

    The Independent Detector Testing Laboratory (IDTL) is jointly operated by the Space Telescope Science Institute (STScI) and the Johns Hopkins University (MU), and is assisting the James Webb Space Telescope (JWST) mission in choosing and operating the best near-infrared detectors under a NASA Grant. The JWST is the centerpiece of the NASA Office of Space Science theme, the Astronomical Search for Origins, and the highest priority astronomy project for the next decade, according to the National Academy of Science. JWST will need to have the sensitivity to see the first light in the Universe to determine how galaxies formed in the web of dark matter that existed when the Universe was in its infancy (z approx. 10 - 20). To achieve this goal, the JWST Project must pursue an aggressive technology program and advance infrared detectors to performance levels beyond what is now possible. As part of this program, NASA has selected the IDTL to verify comparative performance between prototype JWST detectors developed by Rockwell Scientific (HgCdTe) and Raytheon (InSb). The IDTL is charged with obtaining an independent assessment of the ability of these two competing technologies to achieve the demanding specifications of the JWST program within the 0.6 - 5 approx. mum bandpass and in an ultra-low background (less than 0.01 e'/s/pixel) environment. We describe results from the JWST Detector Characterization Project that is being performed in the IDTL. In this project, we are measuring first-order detector parameters, i.e. dark current, read noise, QE, intra-pixel sensitivity, linearity, as functions of temperature, well size, and operational mode.

  7. Thermally Tunable Hydrogels Displaying Angle‐Independent Structural Colors

    PubMed Central

    Ohtsuka, Yumiko; Seki, Takahiro

    2015-01-01

    Abstract We report the preparation of thermally tunable hydrogels displaying angle‐independent structural colors. The porous structures were formed with short‐range order using colloidal amorphous array templates and a small amount of carbon black (CB). The resultant porous hydrogels prepared using colloidal amorphous arrays without CB appeared white, whereas the hydrogels with CB revealed bright structural colors. The brightly colored hydrogels rapidly changed hues in a reversible manner, and the hues varied widely depending on the water temperature. Moreover, the structural colors were angle‐independent under diffusive lighting because of the isotropic nanostructure generated from the colloidal amorphous arrays. PMID:26503915

  8. Model-independent constraints on possible modifications of Newtonian gravity

    NASA Technical Reports Server (NTRS)

    Talmadge, C.; Berthias, J.-P.; Hellings, R. W.; Standish, E. M.

    1988-01-01

    New model-independent constraints on possible modifications of Newtonian gravity over solar-system distance scales are presented, and their implications discussed. The constraints arise from the analysis of various planetary astrometric data sets. The results of the model-independent analysis are then applied to set limits on a variation in the l/r-squared behavior of gravity, on possible Yukawa-type interactions with ranges of the order of planetary distance scales, and on a deviation from Newtonian gravity of the type discussed by Milgrom (1983).

  9. [Independent ethics committees for clinical research in Argentina. An evaluation and a system to guarantee their independence].

    PubMed

    Gonorazky, Sergio E

    2008-01-01

    The Administración Nacional de Medicamentos, Alimentos y Tecnología Médica de la República Argentina (ANMAT) requires that an independent ethics committee of sponsors and/or researchers must previously evaluate and approve all the new pharmacological research protocols carried out on human beings. However, due to the lucrative nature of the evaluation, and because the selection of the Independent Ethics Committee is carried out by the sponsors and/or researchers, the assumed autonomy of the former can be reduced to merely a relationship of "service provider-customer". The Institutional Review Board of the Mar del Plata s Community Hospital has evaluated, between 2005 and 2006, thirty three research protocols (with their corresponding information sheets for patients and informed consent forms) previously approved by a non-institutional Independent Ethics Committee. The median number of objections made by the Institutional Review Board, which prompted the previously mentioned protocols to be modified in order to be approved, was of three per protocol. In other words, the accreditation of an Independent Ethics Committee requires a system that guarantees actual independence from the sponsors and/or researchers, as well as management control mechanisms that may lead them into an eventual loss of accreditation. Several measures are proposed in order to correct the deficiencies of the present system.

  10. Similarities and Differences in the Transition Expectations of Youth and Parents

    ERIC Educational Resources Information Center

    Powers, Kristin; Geenen, Sarah; Powers, Laurie E.

    2009-01-01

    This study explored similarities and differences in the transition expectations of parents and youth. Independent samples of parents (N = 270) of transition-age youth with disabilities and students with disabilities (N = 242) were surveyed about the importance of achieving various adult goals, having specific types of transition-related training…

  11. Equiangular Surfaces, Self-Similar Surfaces, and the Geometry of Seashells

    ERIC Educational Resources Information Center

    Boyadzhiev, Khristo N.

    2007-01-01

    Logarithmic spirals are among the most fascinating curves in the plane, being the only curves that are equiangular, and the only ones that are self-similar. In this article, we show that in three dimensions, these two properties are independent. Although there are surfaces that have both properties, there are some that are equiangular, but not…

  12. Statistical self-similarity of hotspot seamount volumes modeled as self-similar criticality

    USGS Publications Warehouse

    Tebbens, S.F.; Burroughs, S.M.; Barton, C.C.; Naar, D.F.

    2001-01-01

    The processes responsible for hotspot seamount formation are complex, yet the cumulative frequency-volume distribution of hotspot seamounts in the Easter Island/Salas y Gomez Chain (ESC) is found to be well-described by an upper-truncated power law. We develop a model for hotspot seamount formation where uniform energy input produces events initiated on a self-similar distribution of critical cells. We call this model Self-Similar Criticality (SSC). By allowing the spatial distribution of magma migration to be self-similar, the SSC model recreates the observed ESC seamount volume distribution. The SSC model may have broad applicability to other natural systems.

  13. Tree reconstruction from partial orders

    SciTech Connect

    Kannan, S.K. ); Warnow, T.J. )

    1993-01-01

    The problem of constructing trees given a matrix of interleaf distances is motivated by applications in computational evolutionary biology and linguistics. The general problem is to find an edge-weighted tree which most closely approximates the distance matrix. Although the construction problem is easy when the tree exactly fits the distance matrix, optimization problems under all popular criteria are either known or conjectured to be NP-complete. In this paper we consider the related problem where we are given a partial order on the pairwise distances, and wish to construct (if possible) an edge-weighted tree realizing the partial order. In particular we are interested in partial orders which arise from experiments on triples of species, which determine either a linear ordering of the three pairwise distances (called Total Order Model or TOM experiments) or only the pair(s) of minimum distance apart (called Partial Order Model or POM experiments). The POM and TOM experimental model is inspired by the model proposed by Kannan, Lawler, and Warnow for constructing trees from experiments which determine the rooted topology for any triple of species. We examine issues of construction of trees and consistency of TOM and POM experiments, where the trees may either be weighted or unweighted. Using these experiments to construct unweighted trees without nodes of degree two is motivated by a similar problem studied by Winkler, called the Discrete Metric Realization problem, which he showed to be strongly NP-hard. We have the following results: Determining consistency of a set of TOM or POM experiments is NP-Complete whether the tree is weighted or constrained to be unweighted and without degree two nodes. We can construct unweighted trees without degree two nodes from TOM experiments in optimal O(n[sup 3]) time and from POM experiments in O(n[sup 4]) time.

  14. Tree reconstruction from partial orders

    SciTech Connect

    Kannan, S.K.; Warnow, T.J.

    1993-03-01

    The problem of constructing trees given a matrix of interleaf distances is motivated by applications in computational evolutionary biology and linguistics. The general problem is to find an edge-weighted tree which most closely approximates the distance matrix. Although the construction problem is easy when the tree exactly fits the distance matrix, optimization problems under all popular criteria are either known or conjectured to be NP-complete. In this paper we consider the related problem where we are given a partial order on the pairwise distances, and wish to construct (if possible) an edge-weighted tree realizing the partial order. In particular we are interested in partial orders which arise from experiments on triples of species, which determine either a linear ordering of the three pairwise distances (called Total Order Model or TOM experiments) or only the pair(s) of minimum distance apart (called Partial Order Model or POM experiments). The POM and TOM experimental model is inspired by the model proposed by Kannan, Lawler, and Warnow for constructing trees from experiments which determine the rooted topology for any triple of species. We examine issues of construction of trees and consistency of TOM and POM experiments, where the trees may either be weighted or unweighted. Using these experiments to construct unweighted trees without nodes of degree two is motivated by a similar problem studied by Winkler, called the Discrete Metric Realization problem, which he showed to be strongly NP-hard. We have the following results: Determining consistency of a set of TOM or POM experiments is NP-Complete whether the tree is weighted or constrained to be unweighted and without degree two nodes. We can construct unweighted trees without degree two nodes from TOM experiments in optimal O(n{sup 3}) time and from POM experiments in O(n{sup 4}) time.

  15. Narcissism and birth order.

    PubMed

    Eyring, W E; Sobelman, S

    1996-04-01

    The purpose of this investigation was to clarify the relationship between birth-order position and the development of narcissism, while refining research and theory. The relationship between birth-order status and narcissism was examined with a sample of 79 undergraduate students (55 women and 24 men). These subjects were placed in one of the four following birth-order categories of firstborn, second-born, last-born, and only children. These categories were chosen given their significance in Adlerian theory. Each subject completed the Narcissistic Personality Inventory and a demographic inventory. Based on psychodynamic theory, it was hypothesized that firstborn children were expected to score highest, but statistical significance was not found for an association between narcissism and birth order. Further research is urged to investigate personality theory as it relates to parenting style and birth order.

  16. Learning Dilemmas in Undergraduate Student Independent Essays

    ERIC Educational Resources Information Center

    Wendt, Maria; Åse, Cecilia

    2015-01-01

    Essay-writing is generally viewed as the primary learning activity to foster independence and analytical thinking. In this article, we show that independent research projects do not necessarily lead to critical thinking. University-level education on conducting independent projects can, in several respects, counteract enhanced analytical skills.…

  17. 47 CFR 64.904 - Independent audits.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 47 Telecommunication 3 2012-10-01 2012-10-01 false Independent audits. 64.904 Section 64.904... RULES RELATING TO COMMON CARRIERS Allocation of Costs § 64.904 Independent audits. (a) Each carrier... independent auditor every two years, covering the prior two year period, or have a financial audit...

  18. 47 CFR 64.904 - Independent audits.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 47 Telecommunication 3 2013-10-01 2013-10-01 false Independent audits. 64.904 Section 64.904... RULES RELATING TO COMMON CARRIERS Allocation of Costs § 64.904 Independent audits. (a) Each carrier... independent auditor every two years, covering the prior two year period, or have a financial audit...

  19. Independence, Individualism & Connection among Share Householders

    ERIC Educational Resources Information Center

    Natalier, Kristin

    2007-01-01

    How do young people who are financially dependent on their parents but living in share households conceive of the concept of independence? The meanings of independence are discussed in relation to a qualitative study of young people who described themselves as independent although they accepted money on a regular basis from their parents. Their…

  20. 47 CFR 64.904 - Independent audits.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 47 Telecommunication 3 2010-10-01 2010-10-01 false Independent audits. 64.904 Section 64.904... RULES RELATING TO COMMON CARRIERS Allocation of Costs § 64.904 Independent audits. (a) Each carrier... independent auditor every two years, covering the prior two year period, or have a financial audit...

  1. 45 CFR 1309.44 - Independent analysis.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 45 Public Welfare 4 2010-10-01 2010-10-01 false Independent analysis. 1309.44 Section 1309.44... § 1309.44 Independent analysis. (a) The responsible HHS official may direct the grantee applying for funds to acquire or make major renovations to a facility to obtain an independent analysis of the...

  2. 45 CFR 1309.44 - Independent analysis.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 45 Public Welfare 4 2011-10-01 2011-10-01 false Independent analysis. 1309.44 Section 1309.44... § 1309.44 Independent analysis. (a) The responsible HHS official may direct the grantee applying for funds to acquire or make major renovations to a facility to obtain an independent analysis of the...

  3. 45 CFR 1309.44 - Independent analysis.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 45 Public Welfare 4 2013-10-01 2013-10-01 false Independent analysis. 1309.44 Section 1309.44... § 1309.44 Independent analysis. (a) The responsible HHS official may direct the grantee applying for funds to acquire or make major renovations to a facility to obtain an independent analysis of the...

  4. 45 CFR 1309.44 - Independent analysis.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 45 Public Welfare 4 2012-10-01 2012-10-01 false Independent analysis. 1309.44 Section 1309.44... § 1309.44 Independent analysis. (a) The responsible HHS official may direct the grantee applying for funds to acquire or make major renovations to a facility to obtain an independent analysis of the...

  5. 45 CFR 1309.44 - Independent analysis.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 45 Public Welfare 4 2014-10-01 2014-10-01 false Independent analysis. 1309.44 Section 1309.44... § 1309.44 Independent analysis. (a) The responsible HHS official may direct the grantee applying for funds to acquire or make major renovations to a facility to obtain an independent analysis of the...

  6. 46 CFR 62.30-5 - Independence.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... instrumentation systems for any vital system must be independent of each other. (2) Independent sensors are not required except that sensors for primary speed, pitch, or direction of rotation control in closed loop..., or instrumentation sensors. (3) The safety trip control of § 62.35-5(b)(2) must be independent...

  7. 11 CFR 100.113 - Independent expenditures.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 11 Federal Elections 1 2010-01-01 2010-01-01 false Independent expenditures. 100.113 Section 100...) Definition of Expenditure (2 U.S.C. 431(9)) § 100.113 Independent expenditures. An independent expenditure that meets the requirements of 11 CFR 104.4 or part 109 is an expenditure, and such...

  8. Incoherent exciton trapping in self-similar aperiodic lattices

    SciTech Connect

    Dominguez-Adame, F.; Macia, E. ); Sanchez, A. Escuela Politecnica Superior, Universidad Carlos III de Madrid, C./Butarque 15, E-28911 Leganes, Madrid )

    1995-01-01

    Incoherent exciton dynamics in one-dimensional perfect lattices with traps at sites arranged according to aperiodic deterministic sequences is studied. We focus our attention on Thue-Morse and Fibonacci systems as canonical examples of self-similar aperiodic systems. Solving numerically the corresponding master equation we evaluate the survival probability and the mean-square displacement of an exciton initially created at a single site. Results are compared to systems of the same size with the same concentration of traps randomly as well as periodically distributed over the whole lattice. Excitons progressively extend over the lattice on increasing time and, in this sense, they act as a probe of the particular arrangements of traps in each system considered. The analysis of the characteristic features of their time decay indicates that exciton dynamics in self-similar aperiodic arrangements of traps is quite close to that observed in periodic ones, but differs significantly from that corresponding to random lattices. We also report on characteristic features of exciton motion suggesting that Fibonacci and Thue-Morse orderings might be clearly observed by appropriate experimental measurements. In the conclusions we comment on the implications of our work on the way towards a unified theory of the ordering of matter.

  9. 75 FR 34782 - Exelon Generation Company, LLC, Braidwood Station, Independent Spent Fuel Installation Order...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-06-18

    ... Investigation (FBI) identification and criminal history records check (CHRC). Where an applicant for unescorted..., may be included in addition to the FBI CHRC, and is encouraged if the results of the FBI CHRC... individual who will review the results of the FBI CHRCs to make trustworthiness and...

  10. Memory-hazard-aware k-buffer algorithm for order-independent transparency rendering.

    PubMed

    Zhang, Nan

    2014-02-01

    The (k)-buffer algorithm is an efficient GPU-based fragment level sorting algorithm for rendering transparent surfaces. Because of the inherent massive parallelism of GPU stream processors, this algorithm suffers serious read-after-write memory hazards now. In this paper, we introduce an improved (k)-buffer algorithm with error correction coding to combat memory hazards. Our algorithm results in significantly reduced artifacts. While preserving all the merits of the original algorithm, it requires merely OpenGL 3.x support from the GPU, instead of the atomic operations appearing only in the latest OpenGL 4.2 standard. Our algorithm is simple to implement and efficient in performance. Future GPU support for improving this algorithm is also proposed.

  11. Memory-Hazard-Aware K-Buffer Algorithm for Order-Independent Transparency Rendering.

    PubMed

    Zhang, Nan

    2013-04-04

    The k-buffer algorithm is an efficient GPU based fragment level sorting algorithm for rendering transparent surfaces. Because of the inherent massive parallelism of GPU stream processors, this algorithm suffers serious read-after-write memory hazards now. In this paper, we introduce an improved k-buffer algorithm with error correction coding to combat memory hazards. Our algorithm results in significantly reduced artifacts. While preserving all the merits of the original algorithm, it requires merely OpenGL 3.x support from the GPU, instead of the atomic operations appearing only in the latest OpenGL 4.2 standard. Our algorithm is simple to implement and efficient in performance. Future GPU support for improving this algorithm is also proposed.

  12. Independent losses of visual perception genes Gja10 and Rbp3 in echolocating bats (Order: Chiroptera).

    PubMed

    Shen, Bin; Fang, Tao; Dai, Mengyao; Jones, Gareth; Zhang, Shuyi

    2013-01-01

    A trade-off between the sensory modalities of vision and hearing is likely to have occurred in echolocating bats as the sophisticated mechanism of laryngeal echolocation requires considerable neural processing and has reduced the reliance of echolocating bats on vision for perceiving the environment. If such a trade-off exists, it is reasonable to hypothesize that some genes involved in visual function may have undergone relaxed selection or even functional loss in echolocating bats. The Gap junction protein, alpha 10 (Gja10, encoded by Gja10 gene) is expressed abundantly in mammal retinal horizontal cells and plays an important role in horizontal cell coupling. The interphotoreceptor retinoid-binding protein (Irbp, encoded by the Rbp3 gene) is mainly expressed in interphotoreceptor matrix and is known to be critical for normal functioning of the visual cycle. We sequenced Gja10 and Rbp3 genes in a taxonomically wide range of bats with divergent auditory characteristics (35 and 18 species for Gja10 and Rbp3, respectively). Both genes have became pseudogenes in species from the families Hipposideridae and Rhinolophidae that emit constant frequency echolocation calls with Doppler shift compensation at high-duty-cycles (the most sophisticated form of biosonar known), and in some bat species that emit echolocation calls at low-duty-cycles. Our study thus provides further evidence for the hypothesis that a trade-off occurs at the genetic level between vision and echolocation in bats.

  13. Learning semantic and visual similarity for endomicroscopy video retrieval.

    PubMed

    Andre, Barbara; Vercauteren, Tom; Buchner, Anna M; Wallace, Michael B; Ayache, Nicholas

    2012-06-01

    Content-based image retrieval (CBIR) is a valuable computer vision technique which is increasingly being applied in the medical community for diagnosis support. However, traditional CBIR systems only deliver visual outputs, i.e., images having a similar appearance to the query, which is not directly interpretable by the physicians. Our objective is to provide a system for endomicroscopy video retrieval which delivers both visual and semantic outputs that are consistent with each other. In a previous study, we developed an adapted bag-of-visual-words method for endomicroscopy retrieval, called "Dense-Sift," that computes a visual signature for each video. In this paper, we present a novel approach to complement visual similarity learning with semantic knowledge extraction, in the field of in vivo endomicroscopy. We first leverage a semantic ground truth based on eight binary concepts, in order to transform these visual signatures into semantic signatures that reflect how much the presence of each semantic concept is expressed by the visual words describing the videos. Using cross-validation, we demonstrate that, in terms of semantic detection, our intuitive Fisher-based method transforming visual-word histograms into semantic estimations outperforms support vector machine (SVM) methods with statistical significance. In a second step, we propose to improve retrieval relevance by learning an adjusted similarity distance from a perceived similarity ground truth. As a result, our distance learning method allows to statistically improve the correlation with the perceived similarity. We also demonstrate that, in terms of perceived similarity, the recall performance of the semantic signatures is close to that of visual signatures and significantly better than those of several state-of-the-art CBIR methods. The semantic signatures are thus able to communicate high-level medical knowledge while being consistent with the low-level visual signatures and much shorter than them

  14. Laplacian Eigenmaps From Sparse, Noisy Similarity Measurements

    NASA Astrophysics Data System (ADS)

    Levin, Keith; Lyzinski, Vince

    2017-04-01

    Manifold learning and dimensionality reduction techniques are ubiquitous in science and engineering, but can be computationally expensive procedures when applied to large data sets or when similarities are expensive to compute. To date, little work has been done to investigate the tradeoff between computational resources and the quality of learned representations. We present both theoretical and experimental explorations of this question. In particular, we consider Laplacian eigenmaps embeddings based on a kernel matrix, and explore how the embeddings behave when this kernel matrix is corrupted by occlusion and noise. Our main theoretical result shows that under modest noise and occlusion assumptions, we can (with high probability) recover a good approximation to the Laplacian eigenmaps embedding based on the uncorrupted kernel matrix. Our results also show how regularization can aid this approximation. Experimentally, we explore the effects of noise and occlusion on Laplacian eigenmaps embeddings of two real-world data sets, one from speech processing and one from neuroscience, as well as a synthetic data set.

  15. Pathogenesis of Malaria and Clinically Similar Conditions

    PubMed Central

    Clark, Ian A.; Alleva, Lisa M.; Mills, Alison C.; Cowden, William B.

    2004-01-01

    There is now wide acceptance of the concept that the similarity between many acute infectious diseases, be they viral, bacterial, or parasitic in origin, is caused by the overproduction of inflammatory cytokines initiated when the organism interacts with the innate immune system. This is also true of certain noninfectious states, such as the tissue injury syndromes. This review discusses the historical origins of these ideas, which began with tumor necrosis factor (TNF) and spread from their origins in malaria research to other fields. As well the more established proinflammatory mediators, such as TNF, interleukin-1, and lymphotoxin, the roles of nitric oxide and carbon monoxide, which are chiefly inhibitory, are discussed. The established and potential roles of two more recently recognized contributors, overactivity of the enzyme poly(ADP-ribose) polymerase 1 (PARP-1) and the escape of high-mobility-group box 1 (HMGB1) protein from its normal location into the circulation, are also put in context. The pathogenesis of the disease caused by falciparum malaria is then considered in the light of what has been learned about the roles of these mediators in these other diseases, as well as in malaria itself. PMID:15258091

  16. Similarity and discrimination learning in humans.

    PubMed

    Noguera, M; Grau, M; Peris, J M; Barbería, I; Chamizo, V D

    2008-10-01

    In an experiment involving a new behavioural preparation the role played by similarity in discrimination learning was examined using visual patterns (i.e., paintings) that might share common elements (specifically, A, BC, and ABC). A-C were small stars of three specific colours (target colours), which were intermixed with other stars of two different colours (distracting colours). The target colours were balanced through A-C. Students received discrimination training in which a fictitious painter was the author of paintings A and BC, while paintings ABC were assigned to a second fictitious painter. During training, the students had to make a choice, in the presence of each pattern, between two response keys, each of them indicating one of the painters. The time taken to respond was also measured. Feedback was always given after each key-press. The results showed that while at times the A+ ABC- discrimination was acquired more readily than was the BC+ ABC- discrimination, on other occasions the reverse was also true, the critical factor being the way in which the colours were combined.

  17. HMMER web server: interactive sequence similarity searching.

    PubMed

    Finn, Robert D; Clements, Jody; Eddy, Sean R

    2011-07-01

    HMMER is a software suite for protein sequence similarity searches using probabilistic methods. Previously, HMMER has mainly been available only as a computationally intensive UNIX command-line tool, restricting its use. Recent advances in the software, HMMER3, have resulted in a 100-fold speed gain relative to previous versions. It is now feasible to make efficient profile hidden Markov model (profile HMM) searches via the web. A HMMER web server (http://hmmer.janelia.org) has been designed and implemented such that most protein database searches return within a few seconds. Methods are available for searching either a single protein sequence, multiple protein sequence alignment or profile HMM against a target sequence database, and for searching a protein sequence against Pfam. The web server is designed to cater to a range of different user expertise and accepts batch uploading of multiple queries at once. All search methods are also available as RESTful web services, thereby allowing them to be readily integrated as remotely executed tasks in locally scripted workflows. We have focused on minimizing search times and the ability to rapidly display tabular results, regardless of the number of matches found, developing graphical summaries of the search results to provide quick, intuitive appraisement of them.

  18. Exploring similarities among many species distributions

    USGS Publications Warehouse

    Simmerman, Scott; Wang, Jingyuan; Osborne, James; Shook, Kimberly; Huang, Jian; Godsoe, William; Simons, Theodore R.

    2012-01-01

    Collecting species presence data and then building models to predict species distribution has been long practiced in the field of ecology for the purpose of improving our understanding of species relationships with each other and with the environment. Due to limitations of computing power as well as limited means of using modeling software on HPC facilities, past species distribution studies have been unable to fully explore diverse data sets. We build a system that can, for the first time to our knowledge, leverage HPC to support effective exploration of species similarities in distribution as well as their dependencies on common environmental conditions. Our system can also compute and reveal uncertainties in the modeling results enabling domain experts to make informed judgments about the data. Our work was motivated by and centered around data collection efforts within the Great Smoky Mountains National Park that date back to the 1940s. Our findings present new research opportunities in ecology and produce actionable field-work items for biodiversity management personnel to include in their planning of daily management activities.

  19. Similarly shaped letters evoke similar colors in grapheme-color synesthesia.

    PubMed

    Brang, David; Rouw, Romke; Ramachandran, V S; Coulson, Seana

    2011-04-01

    Grapheme-color synesthesia is a neurological condition in which viewing numbers or letters (graphemes) results in the concurrent sensation of color. While the anatomical substrates underlying this experience are well understood, little research to date has investigated factors influencing the particular colors associated with particular graphemes or how synesthesia occurs developmentally. A recent suggestion of such an interaction has been proposed in the cascaded cross-tuning (CCT) model of synesthesia, which posits that in synesthetes connections between grapheme regions and color area V4 participate in a competitive activation process, with synesthetic colors arising during the component-stage of grapheme processing. This model more directly suggests that graphemes sharing similar component features (lines, curves, etc.) should accordingly activate more similar synesthetic colors. To test this proposal, we created and regressed synesthetic color-similarity matrices for each of 52 synesthetes against a letter-confusability matrix, an unbiased measure of visual similarity among graphemes. Results of synesthetes' grapheme-color correspondences indeed revealed that more similarly shaped graphemes corresponded with more similar synesthetic colors, with stronger effects observed in individuals with more intense synesthetic experiences (projector synesthetes). These results support the CCT model of synesthesia, implicate early perceptual mechanisms as driving factors in the elicitation of synesthetic hues, and further highlight the relationship between conceptual and perceptual factors in this phenomenon.

  20. Drug repositioning by applying 'expression profiles' generated by integrating chemical structure similarity and gene semantic similarity.

    PubMed

    Tan, Fujian; Yang, Ruizhi; Xu, Xiaoxue; Chen, Xiujie; Wang, Yunfeng; Ma, Hongzhe; Liu, Xiangqiong; Wu, Xin; Chen, Yuelong; Liu, Lei; Jia, Xiaodong

    2014-05-01

    Drug repositioning, also known as drug repurposing or reprofiling, is the process of finding new indications for established drugs. Because drug repositioning can reduce costs and enhance the efficiency of drug development, it is of paramount importance in medical research. Here, we present a systematic computational method to identify potential novel indications for a given drug. This method utilizes some prior knowledge such as 3D drug chemical structure information, drug-target interactions and gene semantic similarity information. Its prediction is based on another form of 'expression profile', which contains scores ranging from -1 to 1, reflecting the consensus response scores (CRSs) between each drug of 965 and 1560 proteins. The CRS integrates chemical structure similarity and gene semantic similarity information. We define the degree of similarity between two drugs as the absolute value of their correlation coefficients. Finally, we establish a drug similarity network (DSN) and obtain 33 modules of drugs with similar modes of action, determining their common indications. Using these modules, we predict new indications for 143 drugs and identify previously unknown indications for 42 drugs without ATC codes. This method overcomes the instability of gene expression profiling derived from experiments due to experimental conditions, and predicts indications for a new compound feasibly, requiring only the 3D structure of the compound. In addition, the high literature validation rate of 71.8% also suggests that our method has the potential to discover novel drug indications for existing drugs.

  1. Angle-independent structural colors of silicon

    NASA Astrophysics Data System (ADS)

    Højlund-Nielsen, Emil; Weirich, Johannes; Nørregaard, Jesper; Garnaes, Joergen; Asger Mortensen, N.; Kristensen, Anders

    2014-01-01

    Structural colors are optical phenomena of physical origin, where microscale and nanoscale structures determine the reflected spectrum of light. Artificial structural colors have been realized within recent years. However, multilayer structures require substantial fabrication. Instead we considered one-layer surface textures of silicon. We explored four patterns of square structures in a square lattice with periods of 500, 400, 300, and 200 nm. The reflectivity and daylight-colors were measured and compared with simulations based on rigorously coupled-wave analysis with excellent agreement. Based on the 200-nm periodic pattern, it was found that angle-independent specular colors up to 60 deg of incidence may be provided. The underlying mechanisms include (1) the suppression of diffraction and (2) a strong coupling of light to localized surface states. The strong coupling yields absorption anomalies in the visual spectrum, causing robust colors to be defined for a large angular interval. The result is a manifestation of a uniformly defined color, similar to pigment-based colors. These mechanisms hold potential for color engineering and can be used to explain and predict the structural-color appearance of silicon-based textures for a wide range of structural parameters.

  2. The Model-Independent Growing Oil Problem

    NASA Astrophysics Data System (ADS)

    Nur, A. M.

    2004-12-01

    The debate rages on whether M. K. Hubbert's model-based prediction regarding the inevitability of oil production decline is correct or not. However simple model-independent projections illuminate the magnitude of the oil (and similarly gas) supply challenges the world is beginning to face now. Current worldwide demand is increasing at a rate of 2-3 percent a year. But as many economies are experiencing accelerated growth, this rate may grow in the near future. The numbers below show the magnitude of the challenge this sort of growth will pose. For example to bring per capita oil consumption in China and India to present world average level will require a 35 percent increase in annual production, or to elevate world average per capita consumption to 25 percent of US level will require a 50 percent increase in annual production. All indications are that these sorts of added demand levels will be extremely difficult to meet both in terms of production rate and resource replacement and therefore pose a coupled economic and security risk to the world.

  3. Simultaneous registration of multiple images: similarity metrics and efficient optimization.

    PubMed

    Wachinger, Christian; Navab, Nassir

    2013-05-01

    We address the alignment of a group of images with simultaneous registration. Therefore, we provide further insights into a recently introduced framework for multivariate similarity measures, referred to as accumulated pair-wise estimates (APE), and derive efficient optimization methods for it. More specifically, we show a strict mathematical deduction of APE from a maximum-likelihood framework and establish a connection to the congealing framework. This is only possible after an extension of the congealing framework with neighborhood information. Moreover, we address the increased computational complexity of simultaneous registration by deriving efficient gradient-based optimization strategies for APE: Gauss-Newton and the efficient second-order minimization (ESM). We present next to SSD the usage of intrinsically nonsquared similarity measures in this least squares optimization framework. The fundamental assumption of ESM, the approximation of the perfectly aligned moving image through the fixed image, limits its application to monomodal registration. We therefore incorporate recently proposed structural representations of images which allow us to perform multimodal registration with ESM. Finally, we evaluate the performance of the optimization strategies with respect to the similarity measures, leading to very good results for ESM. The extension to multimodal registration is in this context very interesting because it offers further possibilities for evaluations, due to publicly available datasets with ground-truth alignment.

  4. Similarity of Symbol Frequency Distributions with Heavy Tails

    NASA Astrophysics Data System (ADS)

    Gerlach, Martin; Font-Clos, Francesc; Altmann, Eduardo G.

    2016-04-01

    Quantifying the similarity between symbolic sequences is a traditional problem in information theory which requires comparing the frequencies of symbols in different sequences. In numerous modern applications, ranging from DNA over music to texts, the distribution of symbol frequencies is characterized by heavy-tailed distributions (e.g., Zipf's law). The large number of low-frequency symbols in these distributions poses major difficulties to the estimation of the similarity between sequences; e.g., they hinder an accurate finite-size estimation of entropies. Here, we show analytically how the systematic (bias) and statistical (fluctuations) errors in these estimations depend on the sample size N and on the exponent γ of the heavy-tailed distribution. Our results are valid for the Shannon entropy (α =1 ), its corresponding similarity measures (e.g., the Jensen-Shanon divergence), and also for measures based on the generalized entropy of order α . For small α 's, including α =1 , the errors decay slower than the 1 /N decay observed in short-tailed distributions. For α larger than a critical value α*=1 +1 /γ ≤2 , the 1 /N decay is recovered. We show the practical significance of our results by quantifying the evolution of the English language over the last two centuries using a complete α spectrum of measures. We find that frequent words change more slowly than less frequent words and that α =2 provides the most robust measure to quantify language change.

  5. THE INDEPENDENT ACTION THEORY OF MORTALITY AS TESTED AT FORT DETRICK

    DTIC Science & Technology

    The independent action theory is compared with the probit and similar approaches. The basic question is the variation of susceptibility among...survival against dose and failure of estimates of virus population to conform to the dilution ratio are viewed as evidence against the independent action theory .

  6. Similarities between cysteinesulphinate transaminase and aspartate aminotransferase.

    PubMed

    Recasens, M; Mandel, P

    1979-01-01

    A method for the purification of two cysteinesulphinate transaminases, A and B (EC 2.6.1), is described. These enzymes catalyse the conversion of cysteinesulphinic acid to beta-sulphinyl pyruvate. The final preparations are homogeneous by polyacrylamide gel electrophoresis, sodium dodecyl sulphate-polyacrylamide gel electrophoresis and isoelectrofocusing. The molecular weight of the subunits is 41 000 for cysteinesulphinate transaminase A and 43 400 for B. Both enzymes are unspecific, as L-asparate, L-glutamate and L-cysteic acid serve as substrates in addition to L-cysteinesulphinic acid. Cysteinesulphinate transaminase A has a Km of 9.8 mM for cysteinesulphinic acid and 0.25 mM for aspartic acid, whereas the B enzyme has a Km of 6.5 mM for cysteinesulphinic acid and 1.4 mM for aspartic acid. The Vmax values of the A and B enzymes are respectively 7.1 and 6.2 mmol h-1 mg-1 protein for aspartic acid and 45 and 9.3 mmol h-1 mg-1 protein for cysteinesulphinic acid. Both enzymes exhibit maximum activity at pH 8.6. A high specific activity is found in optimal conditions for these two transaminases, the pI values being 9.06 and 5.70 for cysteinesulphinate transaminase A and B respectively. These results have been compared with those already obtained for purified aspartate aminotransferase. Similarities in the pathways of taurine and gamma-aminobutyric acid (GABA) metabolism are discussed.

  7. Synthetic and Biopolymer Gels - Similarities and Difference.

    NASA Astrophysics Data System (ADS)

    Horkay, Ferenc

    2006-03-01

    Ion exchange plays a central role in a variety of physiological processes, such as nerve excitation, muscle contraction and cell locomotion. Hydrogels can be used as model systems for identifying fundamental chemical and physical interactions that govern structure formation, phase transition, etc. in biopolymer systems. Polyelectrolyte gels are particularly well-suited to study ion-polymer interactions because their structure and physical-chemical properties (charge density, crosslink density, etc) can be carefully controlled. They are sensitive to different external stimuli such as temperature, ionic composition and pH. Surprisingly few investigations have been made on polyelectrolyte gels in salt solutions containing both monovalent and multivalent cations. We have developed an experimental approach that combines small angle neutron scattering and osmotic swelling pressure measurements. The osmotic pressure exerted on a macroscopic scale is a consequence of changes occurring at a molecular level. The intensity of the neutron scattering signal, which provides structural information as a function of spatial resolution, is directly related to the osmotic pressure. We have found a striking similarity in the scattering and osmotic behavior of polyacrylic acid gels and DNA gels swollen in nearly physiological salt solutions. Addition of calcium ions to both systems causes a sudden volume change. This volume transition, which occurs when the majority of the sodium counterions are replaced by calcium ions, is reversible. Such reversibility implies that the calcium ions are not strongly bound by the polyanion, but are free to move along the polymer chain, which allows these ions to form temporary bridges between negative charges on adjacent chains. Mechanical measurements reveal that the elastic modulus is practically unchanged in the calcium-containing gels, i.e., ion bridging is qualitatively different from covalent crosslinks.

  8. Origin of the Nubian and similar sandstones

    USGS Publications Warehouse

    McKee, E.D.

    1963-01-01

    The Nubian Sandstone and similar sandstone bodies exposed across much of northern Africa and adjoining parts of Asia are characteristically formed of clean sand that is conspicuously cross stratified throughout. Such sandstone, here called Nubian-type sandstone, ranges from Cambrian through Cretaceous in age and its genesis has been interpreted in many ways. Studies of its primary structures, and of the direction of sand transport, based on statistical measurements of foreset dip directions, have contributed new data on its genesis. By far the most common structure in Nubian-type sandstone is a medium-scale planar-type cross stratification in which sets of evenly dipping cross beds are bounded by essentially flat-lying top and bottom surfaces to form tabular bodies. Other less numerous but typical structures are large-scale, truncated-wedge cross strata, trough-type cross strata, intraformational recumbent folds, small-scale ripple laminae, and dipping sets of tabular-planar cross beds. An analysis of these structures suggests that in the typical Nubian Sandstone of Cretaceous age eolian deposits are not represented and normal marine types probably also are lacking; flood plain, pond or lagoon, and other continental and marginal environments are indicated. In the Carboniferous rocks of Sinai Peninsula some beach sandstone and possibly some eolian, in addition to the types described, form part of the sequence. Direction of sand transport, as determined from cross-bed dips, was northerly in the Cretaceous Nubian of Libya, Sudan, and Egypt; easterly in the Jurassic Adigrat of Ethiopia; westerly in the Carboniferous of Sinai; northwesterly in the early Paleozoic of Jordan. ?? 1963 Ferdinand Enke Verlag Stuttgart.

  9. Mapping of VSG similarities in Trypanosoma brucei.

    PubMed

    Weirather, Jason L; Wilson, Mary E; Donelson, John E

    2012-02-01

    The protozoan parasite Trypanosoma brucei switches its variant surface glycoprotein (VSG) to subvert its mammalian hosts' immune responses. The T. brucei genome contains as many as 1600 VSG genes (VSGs), but most are silent noncoding pseudogenes. Only one functional VSG, located in a telomere-linked expression site, is transcribed at a time. Silent VSGs are copied into a VSG expression site through gene conversion. Truncated gene conversion events can generate new mosaic VSGs with segments of sequence identity to other VSGs. To examine the VSG family sub-structure within which these events occur, we combined the available VSG sequences and annotations with scripted BLAST searches to map the relationships among VSGs in the T. brucei genome. Clusters of related VSGs were visualized in 2- and 3-dimensions for different N- and C-terminal regions. Five types of N-termini (N1-N5) were observed, within which gene recombinational events are likely to occur, often with fully-coding 'functional' or 'atypical'VSGs centrally located between more dissimilar VSGs. Members of types N1, N3 and N4 are most closely related in the middle of the N-terminal region, whereas type N2 members are more similar near the N-terminus. Some preference occurs in pairing between specific N- and C-terminal types. Statistical analyses indicated no overall tendency for more related VSGs to be located closer in the genome than less related VSGs, although exceptions were noted. Many potential mosaic gene formation events within each N-terminal type were identified, contrasted by only one possible mosaic gene formation between N-terminal types (N1 and N2). These data suggest that mosaic gene formation is a major contributor to the overall VSG diversity, even though gene recombinational events between members of different N-terminal types occur only rarely.

  10. Halo-independent tests of dark matter annual modulation signals

    SciTech Connect

    Herrero-Garcia, Juan

    2015-09-02

    New halo-independent lower bounds on the product of the dark matter-nucleon scattering cross section and the local dark matter density that are valid for annual modulations of dark matter direct detection signals are derived. They are obtained by making use of halo-independent bounds based on an expansion of the rate on the Earth’s velocity that were derived in previous works. In combination with astrophysical measurements of the local energy density, an observed annual modulation implies a lower bound on the cross section that is independent of the velocity distribution and that must be fulfilled by any particle physics model. In order to illustrate the power of the bounds we apply them to DAMA/LIBRA data and obtain quite strong results when compared to the standard halo model predictions. We also extend the bounds to the case of multi-target detectors.

  11. Model-independent analyses of dark-matter particle interactions

    SciTech Connect

    Anand, Nikhil; Fitzpatrick, A. Liam; Haxton, W. C.

    2015-03-24

    A model-independent treatment of dark-matter particle elastic scattering has been developed, yielding the most general interaction for WIMP-nucleon low-energy scattering, and the resulting amplitude has been embedded into the nucleus, taking into account the selection rules imposed by parity and time-reversal. One finds that, in contrast to the usual spin-independent/spin-dependent (SI/SD) formulation, the resulting cross section contains six independent nuclear response functions, three of which are associated with possible velocity-dependent interactions. We find that current experiments are four orders of magnitude more sensitive to derivative couplings than is apparent in the standard SI/SD treatment, which necessarily associated such interactions with cross sections proportional to v2T ~ 10⁻⁶, where vT is the WIMP velocity relative to the center of mass of the nuclear target.

  12. Model-independent analyses of dark-matter particle interactions

    DOE PAGES

    Anand, Nikhil; Fitzpatrick, A. Liam; Haxton, W. C.

    2015-03-24

    A model-independent treatment of dark-matter particle elastic scattering has been developed, yielding the most general interaction for WIMP-nucleon low-energy scattering, and the resulting amplitude has been embedded into the nucleus, taking into account the selection rules imposed by parity and time-reversal. One finds that, in contrast to the usual spin-independent/spin-dependent (SI/SD) formulation, the resulting cross section contains six independent nuclear response functions, three of which are associated with possible velocity-dependent interactions. We find that current experiments are four orders of magnitude more sensitive to derivative couplings than is apparent in the standard SI/SD treatment, which necessarily associated such interactions withmore » cross sections proportional to v2T ~ 10⁻⁶, where vT is the WIMP velocity relative to the center of mass of the nuclear target.« less

  13. ASDC Order Tools

    Atmospheric Science Data Center

    2012-04-17

    ... users to search our data holdings without logging in to the system. The user, however, must log in before ordering the data. ... Cavity Radiometer Irradiance Monitor II (ACRIM II) Total Solar Irradiance Data Global Tropospheric Experiment (GTE) data (Selected ...

  14. Court Ordered Desegregation

    ERIC Educational Resources Information Center

    Reber, Sarah J.

    2005-01-01

    The effect of the court ordered desegregation plans, on trends in segregation and white flight, are estimated. The effect of availability of school districts and other factors on the white flight across districts is also mentioned.

  15. Self-similar hierarchical energetics in the ICM of massive galaxy clusters

    NASA Astrophysics Data System (ADS)

    Miniati, Francesco; Beresnyak, Andrey

    Massive galaxy clusters (GC) are filled with a hot, turbulent and magnetised intra-cluster medium (ICM). They are still forming under the action of gravitational instability, which drives supersonic mass accretion flows. These partially dissipate into heat through a complex network of large scale shocks, and partly excite giant turbulent eddies and cascade. Turbulence dissipation not only contributes to heating of the ICM but also amplifies magnetic energy by way of dynamo action. The pattern of gravitational energy turning into kinetic, thermal, turbulent and magnetic is a fundamental feature of GC hydrodynamics but quantitative modelling has remained a challenge. In this contribution we present results from a recent high resolution, fully cosmological numerical simulation of a massive Coma-like galaxy cluster in which the time dependent turbulent motions of the ICM are resolved (Miniati 2014) and their statistical properties are quantified for the first time (Miniati 2015, Beresnyak & Miniati 2015). We combine these results with independent state-of-the art numerical simulations of MHD turbulence (Beresnyak 2012), which shows that in the nonlinear regime of turbulent dynamo (for magnetic Prandtl numbers>~ 1) the growth rate of the magnetic energy corresponds to a fraction CE ~= 4 - 5 × 10-2 of the turbulent dissipation rate. We thus determine without adjustable parameters the thermal, turbulent and magnetic history of giant GC (Miniati & Beresnyak 2015). We find that the energy components of the ICM are ordered according to a permanent hierarchy, in which the sonic Mach number at the turbulent injection scale is of order unity, the beta of the plasma of order forty and the ratio of turbulent injection scale to Alfvén scale is of order one hundred. These dimensionless numbers remain virtually unaltered throughout the cluster's history, despite evolution of each individual component and the drive towards equipartition of the turbulent dynamo, thus revealing a new

  16. Model independent MRE data analysis.

    PubMed

    Yoshikawa, Kogo; Nakamura, Gen

    2013-01-01

    For the diagnosing modality called MRE (magnetic resonance elastography), the displacement vector of a wave propagating in a human tissue can be measured. The average of the local wavelength from this measured data could be an index for the diagnosing, because the local wave length becomes larger when the tissue is stiffer. By assuming that the local form of the wave is given approximately as multiple complex plane waves, we identify the real part of the complex linear phase of the strongest plane wave of this multiple complex plane waves, by first applying the FBI transform (Fourier-Bros-Iagolnitzer transform) with an appropriate size of Gaussian window and then taking the maximum of the modulus of the transform with respect to the Fourier variable. The real part of the linear phase is nothing but the real inner product of the wave vector and the position vector. Similarly the imaginary part of the linear phase describes the attenuation of the wave and it is given as a real inner product of a real vector and the position vector. This vector can also be recovered by our method. We also apply these methods to design some denoising and filtering for noisy MRE data.

  17. Are short Gamma Ray Bursts similar to long ones?

    NASA Astrophysics Data System (ADS)

    Ghirlanda, G.; Bernardini, M. G.; Calderone, G.; D'Avanzo, P.

    2015-09-01

    The apparent separation of short and long Gamma-Ray Bursts (GRBs) in the hardness ratio vs duration plot has been considered as a direct evidence of the difference between these two populations. The origin of this diversity, however, has been only confirmed with larger GRB samples but not fully understood. In particular, the hardness ratio is only a proxy of the shape of the spectra of GRBs and itself, together with the observed duration, does not consider the possible different redshift distribution of short and long bursts, which might arise from their different progenitors' nature. By correcting the spectral shape of short and long GRBs for the redshift effects, short GRBs are harder than long ones due to a harder low energy spectral component while the two populations have similar (rest frame) peak energy. In the rest frame, the temporal break of the long/short duration distribution is blurred away and short and long GRBs have a continuous differential duration distribution. Moreover, they show similar luminosities but their energetics differ by a factor proportional to their different average duration. The spectral evolution of long GRBs shows that the initial phase (of the order of 0.3 s rest frame) has similar spectral properties of that of short GRBs. As a consequence, the different hardness at low energies might be due to a prolonged spectral evolution of long GRBs with respect to short ones. Finally, we show that long GRBs can have a null lag similarly to short bursts. Moreover, we find that a considerable fraction of long (and most of short) GRBs are inconsistent with the lag-luminosity relation which could be a boundary in the corresponding plane, rather than a correlation.

  18. Speaker independent acoustic-to-articulatory inversion

    NASA Astrophysics Data System (ADS)

    Ji, An

    Acoustic-to-articulatory inversion, the determination of articulatory parameters from acoustic signals, is a difficult but important problem for many speech processing applications, such as automatic speech recognition (ASR) and computer aided pronunciation training (CAPT). In recent years, several approaches have been successfully implemented for speaker dependent models with parallel acoustic and kinematic training data. However, in many practical applications inversion is needed for new speakers for whom no articulatory data is available. In order to address this problem, this dissertation introduces a novel speaker adaptation approach called Parallel Reference Speaker Weighting (PRSW), based on parallel acoustic and articulatory Hidden Markov Models (HMM). This approach uses a robust normalized articulatory space and palate referenced articulatory features combined with speaker-weighted adaptation to form an inversion mapping for new speakers that can accurately estimate articulatory trajectories. The proposed PRSW method is evaluated on the newly collected Marquette electromagnetic articulography -- Mandarin Accented English (EMA-MAE) corpus using 20 native English speakers. Cross-speaker inversion results show that given a good selection of reference speakers with consistent acoustic and articulatory patterns, the PRSW approach gives good speaker independent inversion performance even without kinematic training data.

  19. Similar Representations of Emotions Across Faces and Voices.

    PubMed

    Kuhn, Lisa Katharina; Wydell, Taeko; Lavan, Nadine; McGettigan, Carolyn; Garrido, Lúcia

    2017-03-02

    Emotions are a vital component of social communication, carried across a range of modalities and via different perceptual signals such as specific muscle contractions in the face and in the upper respiratory system. Previous studies have found that emotion recognition impairments after brain damage depend on the modality of presentation: recognition from faces may be impaired whereas recognition from voices remains preserved, and vice versa. On the other hand, there is also evidence for shared neural activation during emotion processing in both modalities. In a behavioral study, we investigated whether there are shared representations in the recognition of emotions from faces and voices. We used a within-subjects design in which participants rated the intensity of facial expressions and nonverbal vocalizations for each of the 6 basic emotion labels. For each participant and each modality, we then computed a representation matrix with the intensity ratings of each emotion. These matrices allowed us to examine the patterns of confusions between emotions and to characterize the representations of emotions within each modality. We then compared the representations across modalities by computing the correlations of the representation matrices across faces and voices. We found highly correlated matrices across modalities, which suggest similar representations of emotions across faces and voices. We also showed that these results could not be explained by commonalities between low-level visual and acoustic properties of the stimuli. We thus propose that there are similar or shared coding mechanisms for emotions which may act independently of modality, despite their distinct perceptual inputs. (PsycINFO Database Record

  20. 7 CFR 1221.122 - Independent evaluation.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE SORGHUM PROMOTION, RESEARCH, AND INFORMATION ORDER Sorghum Promotion, Research, and Information Order Promotion, Research, and...

  1. 7 CFR 1221.122 - Independent evaluation.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE SORGHUM PROMOTION, RESEARCH, AND INFORMATION ORDER Sorghum Promotion, Research, and Information Order Promotion, Research, and...

  2. 7 CFR 1221.122 - Independent evaluation.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE SORGHUM PROMOTION, RESEARCH, AND INFORMATION ORDER Sorghum Promotion, Research, and Information Order Promotion, Research, and...

  3. 7 CFR 1221.122 - Independent evaluation.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE SORGHUM PROMOTION, RESEARCH, AND INFORMATION ORDER Sorghum Promotion, Research, and Information Order Promotion, Research, and...

  4. 7 CFR 1221.122 - Independent evaluation.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE SORGHUM PROMOTION, RESEARCH, AND INFORMATION ORDER Sorghum Promotion, Research, and Information Order Promotion, Research, and...

  5. 7 CFR 1218.55 - Independent evaluation.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE BLUEBERRY PROMOTION, RESEARCH, AND INFORMATION ORDER Blueberry Promotion, Research, and Information Order Expenses and...

  6. 7 CFR 1218.55 - Independent evaluation.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE BLUEBERRY PROMOTION, RESEARCH, AND INFORMATION ORDER Blueberry Promotion, Research, and Information Order Expenses and...

  7. 7 CFR 1218.55 - Independent evaluation.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE BLUEBERRY PROMOTION, RESEARCH, AND INFORMATION ORDER Blueberry Promotion, Research, and Information Order Expenses and...

  8. 7 CFR 1218.55 - Independent evaluation.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE BLUEBERRY PROMOTION, RESEARCH, AND INFORMATION ORDER Blueberry Promotion, Research, and Information Order Expenses and...

  9. 7 CFR 1218.55 - Independent evaluation.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE BLUEBERRY PROMOTION, RESEARCH, AND INFORMATION ORDER Blueberry Promotion, Research, and Information Order Expenses and...

  10. 7 CFR 1216.53 - Independent evaluation.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE PEANUT PROMOTION, RESEARCH, AND INFORMATION ORDER Peanut Promotion, Research, and Information Order Expenses and Assessments §...

  11. 7 CFR 1216.53 - Independent evaluation.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE PEANUT PROMOTION, RESEARCH, AND INFORMATION ORDER Peanut Promotion, Research, and Information Order Expenses and Assessments §...

  12. 7 CFR 1216.53 - Independent evaluation.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE PEANUT PROMOTION, RESEARCH, AND INFORMATION ORDER Peanut Promotion, Research, and Information Order Expenses and Assessments §...

  13. 7 CFR 1216.53 - Independent evaluation.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE PEANUT PROMOTION, RESEARCH, AND INFORMATION ORDER Peanut Promotion, Research, and Information Order Expenses and Assessments §...

  14. 7 CFR 1216.53 - Independent evaluation.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE PEANUT PROMOTION, RESEARCH, AND INFORMATION ORDER Peanut Promotion, Research, and Information Order Expenses and Assessments §...

  15. 7 CFR 1208.55 - Independent evaluation.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE PROCESSED RASPBERRY PROMOTION, RESEARCH, AND INFORMATION ORDER Processed Raspberry Promotion, Research, and Information Order Expenses...

  16. 7 CFR 1208.55 - Independent evaluation.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... AGREEMENTS AND ORDERS; MISCELLANEOUS COMMODITIES), DEPARTMENT OF AGRICULTURE PROCESSED RASPBERRY PROMOTION, RESEARCH, AND INFORMATION ORDER Processed Raspberry Promotion, Research, and Information Order Expenses...

  17. A similarity-based framework for the alignment of an ontology for remote sensing

    NASA Astrophysics Data System (ADS)

    Farah, Mohamed; Nefzi, Hafedh; Farah, Imed Riadh

    2016-11-01

    Building remote sensing (RS) ontologies can undoubtedly help automatic interpretation of RS images content. Ontology alignment is proven to be an effective ontology building process that enables reusing already existing semantic resources. The quality of the ontology alignment output highly depends on the similarity measures that have been considered as well as the way they are combined together. In the literature, research on similarity measures mainly focuses on how to build new or refine already existing similarity measures leading to a wide range of measures. However, few research addresses their dependencies and combination in order to evaluate the overall similarity of the concepts to be compared. In this paper, we first show how to select a reduced set of similarity measures to be used in the alignment process. Afterwards, we present a ranking model that allows sorting mappings between concepts coming from two different ontologies in a decreasing order of global similarity score. First experimentation shows that the proposed approach is promising.

  18. Spin, orbital ordering, and magnetic dynamics of LaVO{sub 3}: Magnetization, heat capacity, and neutron scattering studies

    SciTech Connect

    Tung, L. D.; Ivanov, A.; Schefer, J.; Lees, M. R.; Balakrishnan, G.; Paul, D. McK.

    2008-08-01

    We report the results of magnetization, heat capacity, and neutron scattering studies of LaVO{sub 3} single crystals. From the neutron-diffraction studies, it was found that the compound is magnetically ordered with a C-type antiferromagnetic spin structure at about 136 K. In the vicinity of the ordering temperature, we also observed hysteresis in the neutron-diffraction data measured on cooling and heating which indicates the first-order nature of the phase transition. In the antiferromagnetically ordered phase, the inelastic neutron scattering studies reveal the presence of a temperature independent c-axis spin-wave gap of about 6 meV which is similar to that previously reported for the sister compound YVO{sub 3}.

  19. Rapid pair-wise synteny analysis of large bacterial genomes using web-based GeneOrder4.0

    PubMed Central

    2010-01-01

    Background The growing whole genome sequence databases necessitate the development of user-friendly software tools to mine these data. Web-based tools are particularly useful to wet-bench biologists as they enable platform-independent analysis of sequence data, without having to perform complex programming tasks and software compiling. Findings GeneOrder4.0 is a web-based "on-the-fly" synteny and gene order analysis tool for comparative bacterial genomics (ca. 8 Mb). It enables the visualization of synteny by plotting protein similarity scores between two genomes and it also provides visual annotation of "hypothetical" proteins from older archived genomes based on more recent annotations. Conclusions The web-based software tool GeneOrder4.0 is a user-friendly application that has been updated to allow the rapid analysis of synteny and gene order in large bacterial genomes. It is developed with the wet-bench researcher in mind. PMID:20178631

  20. Arguments from Developmental Order

    PubMed Central

    Stöckle-Schobel, Richard

    2016-01-01

    In this article1, I investigate a special type of argument regarding the role of development in theorizing about psychological processes and cognitive capacities. Among the issues that developmental psychologists study, discovering the ontogenetic trajectory of mechanisms or capacities underpinning our cognitive functions ranks highly. The order in which functions are developed or capacities are acquired is a matter of debate between competing psychological theories, and also philosophical conceptions of the mind – getting the role and the significance of the different steps in this order right could be seen as an important virtue of such theories. Thus, a special kind of strategy in arguments between competing philosophical or psychological theories is using developmental order in arguing for or against a given psychological claim. In this article, I will introduce an analysis of arguments from developmental order, which come in two general types: arguments emphasizing the importance of the early cognitive processes and arguments emphasizing the late cognitive processes. I will discuss their role in one of the central tools for evaluating scientific theories, namely in making inferences to the best explanation. I will argue that appeal to developmental order is, by itself, an insufficient criterion for theory choice and has to be part of an argument based on other core explanatory or empirical virtues. I will end by proposing a more concerted study of philosophical issues concerning (cognitive) development, and I will present some topics that also pertain to a full-fledged ‘philosophy of development.’ PMID:27242648

  1. How Many Separable Sources? Model Selection In Independent Components Analysis

    PubMed Central

    Woods, Roger P.; Hansen, Lars Kai; Strother, Stephen

    2015-01-01

    Unlike mixtures consisting solely of non-Gaussian sources, mixtures including two or more Gaussian components cannot be separated using standard independent components analysis methods that are based on higher order statistics and independent observations. The mixed Independent Components Analysis/Principal Components Analysis (mixed ICA/PCA) model described here accommodates one or more Gaussian components in the independent components analysis model and uses principal components analysis to characterize contributions from this inseparable Gaussian subspace. Information theory can then be used to select from among potential model categories with differing numbers of Gaussian components. Based on simulation studies, the assumptions and approximations underlying the Akaike Information Criterion do not hold in this setting, even with a very large number of observations. Cross-validation is a suitable, though computationally intensive alternative for model selection. Application of the algorithm is illustrated using Fisher's iris data set and Howells' craniometric data set. Mixed ICA/PCA is of potential interest in any field of scientific investigation where the authenticity of blindly separated non-Gaussian sources might otherwise be questionable. Failure of the Akaike Information Criterion in model selection also has relevance in traditional independent components analysis where all sources are assumed non-Gaussian. PMID:25811988

  2. Self-similarity and self-inversion of quasicrystals

    NASA Astrophysics Data System (ADS)

    Madison, A. E.

    2014-08-01

    The discovery of quasicrystals played a revolutionary role in the condensed matter science and forced to renounce the dogma of the classical crystallography that the regular filling of the space by identical blocks is reduced solely to the Fedorov space groups. It is shown that aperiodic crystals, apart from the similarity, exhibit the self-inversion property. In a broadened sense, the self-inversion implies the possible composition of the inversion with translations, rotations, and homothety, whereas pure reflection by itself in a circle can be absent as an independent symmetry element. It is demonstrated that the symmetry of aperiodic tilings is described by Schottky groups (which belong to a particular type of Kleinian groups generated by the linear fractional Möbius transformations); in the theory of aperiodic crystals, the Schottky groups play the same role that the Fedorov groups play in the theory of crystal lattices. The local matching rules for the Penrose fractal tiling are derived, the problem of choice of the fundamental region of the group of motions of a quasicrystal is discussed, and the relation between the symmetry of aperiodic tilings and the symmetry of constructive fractals is analyzed.

  3. Concomitant Ordering and Symmetry Lowering

    ERIC Educational Resources Information Center

    Boo, William O. J.; Mattern, Daniell L.

    2008-01-01

    Examples of concomitant ordering include magnetic ordering, Jahn-Teller cooperative ordering, electronic ordering, ionic ordering, and ordering of partially-filled sites. Concomitant ordering sets in when a crystal is cooled and always lowers the degree of symmetry of the crystal. Concomitant ordering concepts can also be productively applied to…

  4. Fractional Action Cosmology with Variable Order Parameter

    NASA Astrophysics Data System (ADS)

    El-Nabulsi, Rami Ahmad

    2017-01-01

    Fractional action cosmology with variable order parameter was constructed in this paper. Starting from a fractional weighted action which generalizes the fractional actionlike variational approach, a large number of cosmological dynamical equations are obtained depending on the mathematical type of the fractional order parameter. Through this paper, we selected two independent types which result on a number of cosmological scenarios and we discussed their dynamical consequences. It was observed that the present fractional cosmological formalism holds a large family of solutions and offers new features not found in the standard formalism and in many fundamental research papers.

  5. Fractional Action Cosmology with Variable Order Parameter

    NASA Astrophysics Data System (ADS)

    El-Nabulsi, Rami Ahmad

    2017-04-01

    Fractional action cosmology with variable order parameter was constructed in this paper. Starting from a fractional weighted action which generalizes the fractional actionlike variational approach, a large number of cosmological dynamical equations are obtained depending on the mathematical type of the fractional order parameter. Through this paper, we selected two independent types which result on a number of cosmological scenarios and we discussed their dynamical consequences. It was observed that the present fractional cosmological formalism holds a large family of solutions and offers new features not found in the standard formalism and in many fundamental research papers.

  6. Spatially ordered treemaps.

    PubMed

    Wood, Jo; Dykes, Jason

    2008-01-01

    Existing treemap layout algorithms suffer to some extent from poor or inconsistent mappings between data order and visual ordering in their representation, reducing their cognitive plausibility. While attempts have been made to quantify this mismatch, and algorithms proposed to minimize inconsistency, solutions provided tend to concentrate on one-dimensional ordering. We propose extensions to the existing squarified layout algorithm that exploit the two-dimensional arrangement of treemap nodes more effectively. Our proposed spatial squarified layout algorithm provides a more consistent arrangement of nodes while maintaining low aspect ratios. It is suitable for the arrangement of data with a geographic component and can be used to create tessellated cartograms for geovisualization. Locational consistency is measured and visualized and a number of layout algorithms are compared. CIELab color space and displacement vector overlays are used to assess and emphasize the spatial layout of treemap nodes. A case study involving locations of tagged photographs in the Flickr database is described.

  7. Element-topology-independent preconditioners for parallel finite element computations

    NASA Technical Reports Server (NTRS)

    Park, K. C.; Alexander, Scott

    1992-01-01

    A family of preconditioners for the solution of finite element equations are presented, which are element-topology independent and thus can be applicable to element order-free parallel computations. A key feature of the present preconditioners is the repeated use of element connectivity matrices and their left and right inverses. The properties and performance of the present preconditioners are demonstrated via beam and two-dimensional finite element matrices for implicit time integration computations.

  8. Bioturbo similarity searching: combining chemical and biological similarity to discover structurally diverse bioactive molecules.

    PubMed

    Wassermann, Anne Mai; Lounkine, Eugen; Glick, Meir

    2013-03-25

    Virtual screening using bioactivity profiles has become an integral part of currently applied hit finding methods in pharmaceutical industry. However, a significant drawback of this approach is that it is only applicable to compounds that have been biologically tested in the past and have sufficient activity annotations for meaningful profile comparisons. Although bioactivity data generated in pharmaceutical institutions are growing on an unprecedented scale, the number of biologically annotated compounds still covers only a minuscule fraction of chemical space. For a newly synthesized compound or an isolated natural product to be biologically characterized across multiple assays, it may take a considerable amount of time. Consequently, this chemical matter will not be included in virtual screening campaigns based on bioactivity profiles. To overcome this problem, we herein introduce bioturbo similarity searching that uses chemical similarity to map molecules without biological annotations into bioactivity space and then searches for biologically similar compounds in this reference system. In benchmark calculations on primary screening data, we demonstrate that our approach generally achieves higher hit rates and identifies structurally more diverse compounds than approaches using chemical information only. Furthermore, our method is able to discover hits with novel modes of inhibition that traditional 2D and 3D similarity approaches are unlikely to discover. Test calculations on a set of natural products reveal the practical utility of the approach for identifying novel and synthetically more accessible chemical matter.

  9. Effects of Categorical Labels on Similarity Judgments: A Critical Analysis of Similarity-Based Approaches

    ERIC Educational Resources Information Center

    Noles, Nicholaus S.; Gelman, Susan A.

    2012-01-01

    Our goal in the present study was to evaluate the claim that category labels affect children's judgments of visual similarity. We presented preschool children with discriminable and identical sets of animal pictures and asked them to make perceptual judgments in the presence or absence of labels. Our findings indicate that children who are asked…

  10. Does Language about Similarity Play a Role in Fostering Similarity Comparison in Children?

    ERIC Educational Resources Information Center

    Ozcaliskan, Seyda; Goldin-Meadow, Susan; Gentner, Dedre; Mylander, Carolyn

    2009-01-01

    Commenting on perceptual similarities between objects stands out as an important linguistic achievement, one that may pave the way towards noticing and commenting on more abstract relational commonalities between objects. To explore whether having a conventional linguistic system is necessary for children to comment on different types of…

  11. Identification of multiple independent horizontal gene transfers into poxviruses using a comparative genomics approach

    PubMed Central

    2008-01-01

    Background Poxviruses are important pathogens of humans, livestock and wild animals. These large dsDNA viruses have a set of core orthologs whose gene order is extremely well conserved throughout poxvirus genera. They also contain many genes with sequence and functional similarity to host genes which were probably acquired by horizontal gene transfer. Although phylogenetic trees can indicate the occurrence of horizontal gene transfer and even uncover multiple events, their use may be hampered by uncertainties in both the topology and the rooting of the tree. We propose to use synteny conservation around the horizontally transferred gene (HTgene) to distinguish between single and multiple events. Results Here we devise a method that incorporates comparative genomic information into the investigation of horizontal gene transfer, and we apply this method to poxvirus genomes. We examined the synteny conservation around twenty four pox genes that we identified, or which were reported in the literature, as candidate HTgenes. We found support for multiple independent transfers into poxviruses for five HTgenes. Three of these genes are known to be important for the survival of the virus in or out of the host cell and one of them increases susceptibility to some antiviral drugs. Conclusion In related genomes conserved synteny information can provide convincing evidence for multiple independent horizontal gene transfer events even in the absence of a robust phylogenetic tree for the HTgene. PMID:18304319

  12. Mobile physician order entry.

    PubMed

    Ying, Alan

    2003-01-01

    Because both computerized physician order entry (CPOE) systems and mobile technologies such as handheld devices have the potential to greatly impact the industry's future, IT vendors, hospitals, and clinicians are simply merging them into a logical convergence--"CPOE on a handheld"--with an expectation of full functionality on all platforms: computer workstations, rolling laptops, tablet PCs, and handheld devices. For these trends to succeed together, however, this expectation must be revised to establish a distinct category--mobile physician order entry (MPOE)--that is different from CPOE in form, function, and implementation.

  13. Verbal Ability, Argument Order, and Attitude Formation.

    PubMed

    Mozuraitis, Mindaugas; Chambers, Craig G; Daneman, Meredyth

    2016-01-01

    The current study explored the interaction of verbal ability and presentation order on readers' attitude formation when presented with two-sided arguments. Participants read arguments for and against compulsory voting and genetic engineering, and attitudes were assessed before and after reading the passages. Participants' verbal ability was measured, combining vocabulary knowledge and reading comprehension skill. Results suggested that low verbal-ability participants were more persuaded by the most recent set of arguments whereas high verbal-ability participants formed attitudes independent of presentation order. Contrary to previous literature, individual differences in the personality trait need for cognition did not interact with presentation order. The results suggest that verbal ability is an important moderator of the effect of presentation order when formulating opinions from complex prose.

  14. Verbal Ability, Argument Order, and Attitude Formation

    PubMed Central

    Mozuraitis, Mindaugas; Chambers, Craig G.; Daneman, Meredyth

    2016-01-01

    The current study explored the interaction of verbal ability and presentation order on readers’ attitude formation when presented with two-sided arguments. Participants read arguments for and against compulsory voting and genetic engineering, and attitudes were assessed before and after reading the passages. Participants’ verbal ability was measured, combining vocabulary knowledge and reading comprehension skill. Results suggested that low verbal-ability participants were more persuaded by the most recent set of arguments whereas high verbal-ability participants formed attitudes independent of presentation order. Contrary to previous literature, individual differences in the personality trait need for cognition did not interact with presentation order. The results suggest that verbal ability is an important moderator of the effect of presentation order when formulating opinions from complex prose. PMID:27703437

  15. Independent trapping and manipulation of microparticles using dexterous acoustic tweezers

    NASA Astrophysics Data System (ADS)

    Courtney, Charles R. P.; Demore, Christine E. M.; Wu, Hongxiao; Grinenko, Alon; Wilcox, Paul D.; Cochran, Sandy; Drinkwater, Bruce W.

    2014-04-01

    An electronically controlled acoustic tweezer was used to demonstrate two acoustic manipulation phenomena: superposition of Bessel functions to allow independent manipulation of multiple particles and the use of higher-order Bessel functions to trap particles in larger regions than is possible with first-order traps. The acoustic tweezers consist of a circular 64-element ultrasonic array operating at 2.35 MHz which generates ultrasonic pressure fields in a millimeter-scale fluid-filled chamber. The manipulation capabilities were demonstrated experimentally with 45 and 90-μm-diameter polystyrene spheres. These capabilities bring the dexterity of acoustic tweezers substantially closer to that of optical tweezers.

  16. Independent trapping and manipulation of microparticles using dexterous acoustic tweezers

    SciTech Connect

    Courtney, Charles R. P.; Demore, Christine E. M.; Wu, Hongxiao; Cochran, Sandy; Grinenko, Alon; Wilcox, Paul D.; Drinkwater, Bruce W.

    2014-04-14

    An electronically controlled acoustic tweezer was used to demonstrate two acoustic manipulation phenomena: superposition of Bessel functions to allow independent manipulation of multiple particles and the use of higher-order Bessel functions to trap particles in larger regions than is possible with first-order traps. The acoustic tweezers consist of a circular 64-element ultrasonic array operating at 2.35 MHz which generates ultrasonic pressure fields in a millimeter-scale fluid-filled chamber. The manipulation capabilities were demonstrated experimentally with 45 and 90-μm-diameter polystyrene spheres. These capabilities bring the dexterity of acoustic tweezers substantially closer to that of optical tweezers.

  17. Development Factors and Field Dependence-Independence.

    DTIC Science & Technology

    1984-11-01

    The use of field dependence -field independence measures has been suggested for both the selection and classification of naval aviators. If measures...of field dependence -field independence are predictive of pilot proficiency, the utility of the construct for selection and classification could be...moderated by the influence of intraindividual changes in field dependence -field independence (FD-FI) over time. This report reviews (1) particulars of the

  18. The Similarity of Luminosity in Quasar Doppelganger Pairs

    NASA Astrophysics Data System (ADS)

    Brotherton, Michael S.; Rochais, Thomas Bernard; Singh, Vikram; Chick, William T.; Maithil, Jaya; Sutter, Jessica; Shang, Zhaohui

    2017-01-01

    Quasars, the accreting supermassive black holes at the centers of galaxies, are among the most luminous objects in the universe and in principle ideal for use as so-called "standard candles" with applications in cosmology. Despite possessing a number of spectral features long known to correlate with luminosity, quasars have failed to realize their potential. We have employed spectral principal component analysis to identify more than 1000 quasar pairs from the Sloan Digital Sky Survey with virtually identical ultraviolet spectra, which we call doppelgangers, in order to understand the limits of determining luminosity from spectral features alone. While the majority of doppelgangers have very similar luminosity, there exists a surprisingly large scatter and objects with identical spectra can differ in luminosity by factors of four or larger. We offer some possible physical explanations for this large variance and how it quantifies the problem of ever using quasars as standard candles based on spectral features.

  19. Magnus expansion and in-medium similarity renormalization group

    NASA Astrophysics Data System (ADS)

    Morris, T. D.; Parzuchowski, N. M.; Bogner, S. K.

    2015-09-01

    We present an improved variant of the in-medium similarity renormalization group (IM-SRG) based on the Magnus expansion. In the new formulation, one solves flow equations for the anti-Hermitian operator that, upon exponentiation, yields the unitary transformation of the IM-SRG. The resulting flow equations can be solved using a first-order Euler method without any loss of accuracy, resulting in substantial memory savings and modest computational speedups. Since one obtains the unitary transformation directly, the transformation of additional operators beyond the Hamiltonian can be accomplished with little additional cost, in sharp contrast to the standard formulation of the IM-SRG. Ground state calculations of the homogeneous electron gas (HEG) and 16O nucleus are used as test beds to illustrate the efficacy of the Magnus expansion.

  20. A Data Transfer Fusion Method for Discriminating Similar Spectral Classes

    PubMed Central

    Wang, Qingyan; Zhang, Junping

    2016-01-01

    Hyperspectral data provide new capabilities for discriminating spectrally similar classes, but such class signatures sometimes will be difficult to analyze. To incorporate reliable useful information could help, but at the same time, may also lead increased dimensionality of the feature vector making the hyperspectral data larger than expected. It is challenging to apply discriminative information from these training data to testing data that are not in the same feature space and with different data distributions. A data fusion method based on transfer learning is proposed, in which transfer learning is introduced into boosting algorithm, and other out-date data are used to instruct hyperspectral image classification. In order to validate the method, experiments are conducted on EO-1 Hyperion hyperspectral data and ROSIS hyperspectral data. Significant improvements have been achieved in terms of accuracy compared to the results generated by conventional classification approaches. PMID:27854238

  1. Characterizing self-similarity in bacteria DNA sequences

    NASA Astrophysics Data System (ADS)

    Lu, Xin; Sun, Zhirong; Chen, Huimin; Li, Yanda

    1998-09-01

    In this paper some parametric methods are introduced to characterize the self-similarity of DNA sequences. Compared with Fourier analysis, these methods perform statistically more stably and yield more reliable results. Using these methods, eight whole genomes of bacteria provided by NCBI are analyzed. Long-range correlation properties in the nucleotide density distribution along these DNA sequences are explored. Estimation results show that the long-range correlation structure prevails through the entire molecule of DNA. Higher order statistics through coarse graining reveal that rather than multifractal, there are only monofractal phenomena presented in the sequences. Hence, the nucleotide density distribution can be modeled asymptotically as fractional Gaussian noise. This result points to a new direction for analyzing and understanding the intrinsic structures of DNA sequences.

  2. Court-ordered caesareans.

    PubMed

    Prochaska, Elizabeth; Lomri, Sara

    2014-11-01

    Court-ordered caesarean sections are in the news after a number of recent legal decisions authorising surgery for women who lack mental capacity to consent. The decisions have not always been based on good evidence and they raise serious concerns about the protection of the rights of mentally ill women. The authors explain the legal process and question the wisdom of recent judgements.

  3. Land and World Order.

    ERIC Educational Resources Information Center

    Mische, Patricia, Ed.; And Others

    1982-01-01

    The papers in this publication discuss the land and how what happens to the land affects us. The publication is one in a series of monographs that examine the linkages between local and global concerns and explore alternative world futures. Examples of topics discussed in the papers follow. The paper "Land and World Order" examines…

  4. Education and World Order

    ERIC Educational Resources Information Center

    Jones, Phillip W.

    2007-01-01

    The impact on educational analysis of mainstream international relations (IR) theories is yet to realize its full potential. The problem of education in relation to the construction of world order is considered in relation to core developments in IR theory since the Second World War. In particular, the global architecture of education is seen as a…

  5. Birth Order Debate Resolved?

    ERIC Educational Resources Information Center

    Zajonc, R. B.

    2001-01-01

    Critiques Rodgers et al.'s June 2000 research on the relation between birth order and intelligence, which suggests that it is a methodological illusion. Explains how the intellectual environment and the teaching function (whereby older children tutor younger ones) contribute to the growth of intellectual maturity, the first negatively and the…

  6. The Birth Order Puzzle.

    ERIC Educational Resources Information Center

    Zajonc, R. B.; And Others

    1979-01-01

    Discusses the controversy of the relationship between birth order and intellectual performance through a detailed evaluation of the confluence model which assumes that the rate of intellectual growth is a function of the intellectual environment within the family and associated with the special circumstances of last children. (CM)

  7. Pansedik: Ordering Creative Chaos.

    ERIC Educational Resources Information Center

    Austin, Barbara L.

    1998-01-01

    Presents a case study for use in business communication classes to help students understand and learn both the context and the strategies for communication with business and management. Deals with a new human resource director's attempt to bring order to an organization and software developers' concerns over their work being hindered. Includes two…

  8. Order Division Automated System.

    ERIC Educational Resources Information Center

    Kniemeyer, Justin M.; And Others

    This publication was prepared by the Order Division Automation Project staff to fulfill the Library of Congress' requirement to document all automation efforts. The report was originally intended for internal use only and not for distribution outside the Library. It is now felt that the library community at-large may have an interest in the…

  9. Order Lepidoptera Linnaeus, 1758.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Based on two recent molecular analyses, augmented by the discovery of several published or unpublished novel morphological synapomorphies, a new classification is proposed for the order Lepidoptera. The new classification is more consistent with our growing knowledge of the phylogeny of the group an...

  10. Order, topology and preference

    NASA Technical Reports Server (NTRS)

    Sertel, M. R.

    1971-01-01

    Some standard order-related and topological notions, facts, and methods are brought to bear on central topics in the theory of preference and the theory of optimization. Consequences of connectivity are considered, especially from the viewpoint of normally preordered spaces. Examples are given showing how the theory of preference, or utility theory, can be applied to social analysis.

  11. The waveform similarity approach to identify dependent events in instrumental seismic catalogues

    NASA Astrophysics Data System (ADS)

    Barani, S.; Ferretti, G.; Massa, M.; Spallarossa, D.

    2007-01-01

    In this paper, waveform similarity analysis is adapted and implemented in a declustering procedure to identify foreshocks and aftershocks, to obtain instrumental catalogues that are cleaned of dependent events and to perform an independent check of the results of traditional declustering techniques. Unlike other traditional declustering methods (i.e. windowing techniques), the application of cross-correlation analysis allows definition of groups of dependent events (multiplets) characterized by similar location, fault mechanism and propagation pattern. In this way the chain of intervening related events is led by the seismogenetic features of earthquakes. Furthermore, a time-selection criterion is used to define time-independent seismic episodes eventually joined (on the basis of waveform similarity) into a single multiplet. The results, obtained applying our procedure to a test data set, show that the declustered catalogue is drawn by the Poisson distribution with a degree of confidence higher than using the Gardner and Knopoff method. The declustered catalogues, applying these two approaches, are similar with respect to the frequency-magnitude distribution and the number of earthquakes. Nevertheless, the application of our approach leads to declustered catalogues properly related to the seismotectonic background and the reology of the investigated area and the success of the procedure is ensured by the independence of the results on estimated location errors of the events collected in the raw catalogue.

  12. Thermal-visible registration of human silhouettes: A similarity measure performance evaluation

    NASA Astrophysics Data System (ADS)

    Bilodeau, Guillaume-Alexandre; Torabi, Atousa; St-Charles, Pierre-Luc; Riahi, Dorra

    2014-05-01

    When dealing with the registration of information from different image sources, the de facto similarity measure used is Mutual Information (MI). Although MI gives good performance in many image registration applications, recent works in thermal-visible registration have shown that other similarity measures can give results that are as accurate, if not more than MI. Furthermore, some of these measures also have the advantage of being calculated independently from each image to register, which allows them to be integrated more easily in energy minimization frameworks. In this article, we investigate the accuracy of similarity measures for thermal-visible image registration of human silhouettes, including MI, Sum of Squared Differences (SSD), Normalized Cross-Correlation (NCC), Histograms of Oriented Gradients (HOG), Local Self-Similarity (LSS), Scale-Invariant Feature Transform (SIFT), Speeded-Up Robust Features (SURF), Census, Fast Retina Keypoint (FREAK), and Binary Robust Independent Elementary Feature (BRIEF). We tested the various similarity measures in dense stereo matching tasks over 25,000 windows to have statistically significant results. To do so, we created a new dataset in which one to five humans are walking in a scene in various depth planes. Results show that even if MI is a very strong performer, particularly for large regions of interest (ROI), LSS gives better accuracies when ROI are small or segmented into small fragments because of its ability to capture shape. The other tested similarity measures did not give consistently accurate results.

  13. 77 FR 9225 - Pioneer Transmission, LLC v. Northern Indiana Public Service Company Midwest Independent...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-16

    ... accordance with FERC's order approving transmission rate incentives for Pioneer. Pioneer certifies that... Energy Regulatory Commission Pioneer Transmission, LLC v. Northern Indiana Public Service Company Midwest Independent Transmission System Operator, Inc.; Notice of Complaint Take notice that on February 8,...

  14. Equivalence classes of Fibonacci lattices and their similarity properties

    NASA Astrophysics Data System (ADS)

    Lo Gullo, N.; Vittadello, L.; Bazzan, M.; Dell'Anna, L.

    2016-08-01

    We investigate, theoretically and experimentally, the properties of Fibonacci lattices with arbitrary spacings. Different from periodic structures, the reciprocal lattice and the dynamical properties of Fibonacci lattices depend strongly on the lengths of their lattice parameters, even if the sequence of long and short segment, the Fibonacci string, is the same. In this work we show that by exploiting a self-similarity property of Fibonacci strings under a suitable composition rule, it is possible to define equivalence classes of Fibonacci lattices. We show that the diffraction patterns generated by Fibonacci lattices belonging to the same equivalence class can be rescaled to a common pattern of strong diffraction peaks thus giving to this classification a precise meaning. Furthermore we show that, through the gap labeling theorem, gaps in the energy spectra of Fibonacci crystals belonging to the same class can be labeled by the same momenta (up to a proper rescaling) and that the larger gaps correspond to the strong peaks of the diffraction spectra. This observation makes the definition of equivalence classes meaningful also for the spectral and therefore dynamical and thermodynamical properties of quasicrystals. Our results apply to the more general class of quasiperiodic lattices for which similarity under a suitable deflation rule is in order.

  15. Evaluation of dissolution profile similarity - Comparison between the f2, the multivariate statistical distance and the f2 bootstrapping methods.

    PubMed

    Paixão, Paulo; Gouveia, Luís F; Silva, Nuno; Morais, José A G

    2017-03-01

    A simulation study is presented, evaluating the performance of the f2, the model-independent multivariate statistical distance and the f2 bootstrap methods in the ability to conclude similarity between two dissolution profiles. Different dissolution profiles, based on the Noyes-Whitney equation and ranging from theoretical f2 values between 100 and 40, were simulated. Variability was introduced in the dissolution model parameters in an increasing order, ranging from a situation complying with the European guidelines requirements for the use of the f2 metric to several situations where the f2 metric could not be used anymore. Results have shown that the f2 is an acceptable metric when used according to the regulatory requirements, but loses its applicability when variability increases. The multivariate statistical distance presented contradictory results in several of the simulation scenarios, which makes it an unreliable metric for dissolution profile comparisons. The bootstrap f2, although conservative in its conclusions is an alternative suitable method. Overall, as variability increases, all of the discussed methods reveal problems that can only be solved by increasing the number of dosage form units used in the comparison, which is usually not practical or feasible. Additionally, experimental corrective measures may be undertaken in order to reduce the overall variability, particularly when it is shown that it is mainly due to the dissolution assessment instead of being intrinsic to the dosage form.

  16. Evidence of a forward energy cascade and Kolmogorov self-similarity in submesoscale ocean surface drifter observations

    NASA Astrophysics Data System (ADS)

    Poje, Andrew C.; Ã-zgökmen, Tamay M.; Bogucki, Darek J.; Kirwan, A. D.

    2017-02-01

    Using two-point velocity and position data from the near-simultaneous release of O(100) GPS-tracked surface drifters in the northern Gulf of Mexico, we examine the applicability of classical turbulent scaling laws to upper ocean velocity fields. The dataset allows direct estimates of both velocity structure functions and the temporal evolution of the distribution of particle pair separations. On 100 m-10 km spatial scales, and time scales of order 1-10 days, all metrics of the observed surface fluctuations are consistent with standard Kolmogorov turbulence theory in an energy cascade inertial-range regime. The sign of the third-order structure function is negative and proportional to the separation distance for scales ≲10 km where local, fluctuating Rossby numbers are found to be larger than 0.1. The scale-independent energy dissipation rate, or downscale spectral flux, estimated from Kolmogorov's 4/5th law in this regime closely matches nearby microscale dissipation measurements in the near-surface. In contrast, similar statistics derived from a like-sized set of synthetic drifters advected by purely geostrophic altimetric AVISO data agree well with Kolmogorov-Kraichnan scaling for 2D turbulence in the forward enstrophy cascade range.

  17. Representational similarity analysis - connecting the branches of systems neuroscience.

    PubMed

    Kriegeskorte, Nikolaus; Mur, Marieke; Bandettini, Peter

    2008-01-01

    A FUNDAMENTAL CHALLENGE FOR SYSTEMS NEUROSCIENCE IS TO QUANTITATIVELY RELATE ITS THREE MAJOR BRANCHES OF RESEARCH: brain-activity measurement, behavioral measurement, and computational modeling. Using measured brain-activity patterns to evaluate computational network models is complicated by the need to define the correspondency between the units of the model and the channels of the brain-activity data, e.g., single-cell recordings or voxels from functional magnetic resonance imaging (fMRI). Similar correspondency problems complicate relating activity patterns between different modalities of brain-activity measurement (e.g., fMRI and invasive or scalp electrophysiology), and between subjects and species. In order to bridge these divides, we suggest abstracting from the activity patterns themselves and computing representational dissimilarity matrices (RDMs), which characterize the information carried by a given representation in a brain or model. Building on a rich psychological and mathematical literature on similarity analysis, we propose a new experimental and data-analytical framework called representational similarity analysis (RSA), in which multi-channel measures of neural activity are quantitatively related to each other and to computational theory and behavior by comparing RDMs. We demonstrate RSA by relating representations of visual objects as measured with fMRI in early visual cortex and the fusiform face area to computational models spanning a wide range of complexities. The RDMs are simultaneously related via second-level application of multidimensional scaling and tested using randomization and bootstrap techniques. We discuss the broad potential of RSA, including novel approaches to experimental design, and argue that these ideas, which have deep roots in psychology and neuroscience, will allow the integrated quantitative analysis of data from all three branches, thus contributing to a more unified systems neuroscience.

  18. Fear Similarly Alters Perceptual Estimates of and Actions over Gaps

    PubMed Central

    Geuss, Michael N.; McCardell, Michael J.; Stefanucci, Jeanine K.

    2016-01-01

    Previous research has demonstrated an influence of one’s emotional state on estimates of spatial layout. For example, estimates of heights are larger when the viewer is someone typically afraid of heights (trait fear) or someone who, in the moment, is experiencing elevated levels of fear (state fear). Embodied perception theories have suggested that such a change in perception occurs in order to alter future actions in a manner that reduces the likelihood of injury. However, other work has argued that when acting, it is important to have access to an accurate perception of space and that a change in conscious perception does not necessitate a change in action. No one has yet investigated emotional state, perceptual estimates, and action performance in a single paradigm. The goal of the current paper was to investigate whether fear influences perceptual estimates and action measures similarly or in a dissociable manner. In the current work, participants either estimated gap widths (Experiment 1) or were asked to step over gaps (Experiment 2) in a virtual environment. To induce fear, the gaps were placed at various heights up to 15 meters. Results showed an increase in gap width estimates as participants indicated experiencing more fear. The increase in gap estimates was mirrored in participants’ stepping behavior in Experiment 2; participants stepped over fewer gaps when experiencing higher state and trait fear and, when participants actually stepped, they stepped farther over gap widths when experiencing more fear. The magnitude of the influence of fear on both perception and action were also remarkably similar (5.3 and 3.9 cm, respectively). These results lend support to embodied perception claims by demonstrating an influence on action of a similar magnitude as seen on estimates of gap widths. PMID:27389399

  19. Mosaic, Self-Similarity Logic, and Biological Attraction principles

    PubMed Central

    Baluška, František; Barlow, Peter W; Guidolin, Diego

    2009-01-01

    From a structural standpoint, living organisms are organized like a nest of Russian matryoshka dolls, in which structures are buried within one another. From a temporal point of view, this type of organization is the result of a history comprised of a set of time backcloths which have accompanied the passage of living matter from its origins up to the present day. The aim of the present paper is to indicate a possible course of this ‘passage through time, and suggest how today’s complexity has been reached by living organisms. This investigation will employ three conceptual tools, namely the Mosaic, Self-Similarity Logic, and the Biological Attraction principles. Self-Similarity Logic indicates the self-consistency by which elements of a living system interact, irrespective of the spatiotemporal level under consideration. The term Mosaic indicates how, from the same set of elements assembled according to different patterns, it is possible to arrive at completely different constructions: hence, each system becomes endowed with different emergent properties. The Biological Attraction principle states that there is an inherent drive for association and merging of compatible elements at all levels of biological complexity. By analogy with the gravitation law in physics, biological attraction is based on the evidence that each living organism creates an attractive field around itself. This field acts as a sphere of influence that actively attracts similar fields of other biological systems, thereby modifying salient features of the interacting organisms. Three specific organizational levels of living matter, namely the molecular, cellular, and supracellular levels, have been considered in order to analyse and illustrate the interpretative as well as the predictive roles of each of these three explanatory principles. PMID:20195461

  20. Representational Similarity Analysis – Connecting the Branches of Systems Neuroscience

    PubMed Central

    Kriegeskorte, Nikolaus; Mur, Marieke; Bandettini, Peter

    2008-01-01

    A fundamental challenge for systems neuroscience is to quantitatively relate its three major branches of research: brain-activity measurement, behavioral measurement, and computational modeling. Using measured brain-activity patterns to evaluate computational network models is complicated by the need to define the correspondency between the units of the model and the channels of the brain-activity data, e.g., single-cell recordings or voxels from functional magnetic resonance imaging (fMRI). Similar correspondency problems complicate relating activity patterns between different modalities of brain-activity measurement (e.g., fMRI and invasive or scalp electrophysiology), and between subjects and species. In order to bridge these divides, we suggest abstracting from the activity patterns themselves and computing representational dissimilarity matrices (RDMs), which characterize the information carried by a given representation in a brain or model. Building on a rich psychological and mathematical literature on similarity analysis, we propose a new experimental and data-analytical framework called representational similarity analysis (RSA), in which multi-channel measures of neural activity are quantitatively related to each other and to computational theory and behavior by comparing RDMs. We demonstrate RSA by relating representations of visual objects as measured with fMRI in early visual cortex and the fusiform face area to computational models spanning a wide range of complexities. The RDMs are simultaneously related via second-level application of multidimensional scaling and tested using randomization and bootstrap techniques. We discuss the broad potential of RSA, including novel approaches to experimental design, and argue that these ideas, which have deep roots in psychology and neuroscience, will allow the integrated quantitative analysis of data from all three branches, thus contributing to a more unified systems neuroscience. PMID:19104670

  1. Ignore Similarity If You Can: A Computational Exploration of Exemplar Similarity Effects on Rule Application

    PubMed Central

    Brumby, Duncan P.; Hahn, Ulrike

    2017-01-01

    It is generally assumed that when making categorization judgments the cognitive system learns to focus on stimuli features that are relevant for making an accurate judgment. This is a key feature of hybrid categorization systems, which selectively weight the use of exemplar- and rule-based processes. In contrast, Hahn et al. (2010) have shown that people cannot help but pay attention to exemplar similarity, even when doing so leads to classification errors. This paper tests, through a series of computer simulations, whether a hybrid categorization model developed in the ACT-R cognitive architecture (by Anderson and Betz, 2001) can account for the Hahn et al. dataset. This model implements Nosofsky and Palmeri’s (1997) exemplar-based random walk model as its exemplar route, and combines it with an implementation of Nosofsky et al. (1994) rule-based model RULEX. A thorough search of the model’s parameter space showed that while the presence of an exemplar-similarity effect on response times was associated with classification errors it was possible to fit both measures to the observed data for an unsupervised version of the task (i.e., in which no feedback on accuracy was given). Difficulties arose when the model was applied to a supervised version of the task in which explicit feedback on accuracy was given. Modeling results show that the exemplar-similarity effect is diminished by feedback as the model learns to avoid the error-prone exemplar-route, taking instead the accurate rule-route. In contrast to the model, Hahn et al. found that people continue to exhibit robust exemplar-similarity effects even when given feedback. This work highlights a challenge for understanding how and why people combine rules and exemplars when making categorization decisions. PMID:28377739

  2. Speed invariance of independent control of finger movements in pianists

    PubMed Central

    Soechting, John F.

    2012-01-01

    Independent control of finger movements characterizes skilled motor behaviors such as tool use and musical performance. The purpose of the present study was to identify the effect of movement frequency (tempo) on individuated finger movements in piano playing. Joint motion at the digits was recorded while 5 expert pianists were playing 30 excerpts from musical pieces with different fingering and key locations either at a predetermined normal tempo or as fast as possible. Principal component analysis and cluster analysis using an expectation-maximization algorithm determined three distinct patterns of finger movement coordination for a keypress with each of the index, middle, ring, and little fingers at each of the two tempi. The finger kinematics of each coordination pattern was overall similar across the tempi. Tone sequences assigned into each cluster were also similar for both tempi. A linear regression analysis determined no apparent difference in the amount of movement covariation between the striking and nonstriking fingers at both metacarpo-phalangeal and proximal-interphalangeal joints across the two tempi, which indicated no effect of tempo on independent finger movements in piano playing. In addition, the standard deviation of interkeystroke interval across strokes did not differ between the two tempi, indicating maintenance of rhythmic accuracy of keystrokes. Strong temporal constraints on finger movements during piano playing may underlie the maintained independent control of fingers over a wider range of tempi, a feature being likely to be specific to skilled pianists. PMID:22815403

  3. Sex chromosomes evolved from independent ancestral linkage groups in winged insects.

    PubMed

    Pease, James B; Hahn, Matthew W

    2012-06-01

    The evolution of a pair of chromosomes that differ in appearance between males and females (heteromorphic sex chromosomes) has occurred repeatedly across plants and animals. Recent work has shown that the male heterogametic (XY) and female heterogametic (ZW) sex chromosomes evolved independently from different pairs of homomorphic autosomes in the common ancestor of birds and mammals but also that X and Z chromosomes share many convergent molecular features. However, little is known about how often heteromorphic sex chromosomes have either evolved convergently from different autosomes or in parallel from the same pair of autosomes and how universal patterns of molecular evolution on sex chromosomes really are. Among winged insects with sequenced genomes, there are male heterogametic species in both the Diptera (e.g., Drosophila melanogaster) and the Coleoptera (Tribolium castaneum), female heterogametic species in the Lepidoptera (Bombyx mori), and haplodiploid species in the Hymenoptera (e.g., Nasonia vitripennis). By determining orthologous relationships among genes on the X and Z chromosomes of insects with sequenced genomes, we are able to show that these chromosomes are not homologous to one another but are homologous to autosomes in each of the other species. These results strongly imply that heteromorphic sex chromosomes have evolved independently from different pairs of ancestral chromosomes in each of the insect orders studied. We also find that the convergently evolved X chromosomes of Diptera and Coleoptera share genomic features with each other and with vertebrate X chromosomes, including excess gene movement from the X to the autosomes. However, other patterns of molecular evolution--such as increased codon bias, decreased gene density, and the paucity of male-biased genes on the X--differ among the insect X and Z chromosomes. Our results provide evidence for both differences and nearly universal similarities in patterns of evolution among

  4. Spatial-Temporal Congestion Identification Based on Time Series Similarity Considering Missing Data.

    PubMed

    Qi, Hongsheng; Liu, Meiqi; Wang, Dianhai; Chen, Mengwei

    2016-01-01

    Traffic congestion varies spatially and temporally. The observation of the formation, propagation and dispersion of network traffic congestion can lead to insights about the network performance, the bottleneck dynamics etc. While many researchers use the traffic flow data to reconstruct the congestion profile, the data missing problem is bypassed. Current methods either omit the missing data or supplement the missing part by average etc. Great error may be introduced during these processes. Rather than simply discarding the missing data, this research regards the data missing event as a result of either the severe congestion which prevent the floating vehicle from entering the congested area, or a type of feature of the resulting traffic flow time series. Hence a new traffic flow operational index time series similarity measurement is expected to be established as a basis of identifying the dynamic network bottleneck. The method first measures the traffic flow operational similarity between pairs of neighboring links, and then the similarity results are used to cluster the spatial-temporal congestion. In order to get the similarity under missing data condition, the measurement is implemented in a two-stage manner: firstly the so called first order similarity is calculated given that the traffic flow variables are bounded both upside and downside; then the first order similarity is aggregated to generate the second order similarity as the output. We implement the method on part of the real-world road network; the results generated are not only consistent with empirical observation, but also provide useful insights.

  5. Reduced Order Podolsky Model

    NASA Astrophysics Data System (ADS)

    Thibes, Ronaldo

    2017-02-01

    We perform the canonical and path integral quantizations of a lower-order derivatives model describing Podolsky's generalized electrodynamics. The physical content of the model shows an auxiliary massive vector field coupled to the usual electromagnetic field. The equivalence with Podolsky's original model is studied at classical and quantum levels. Concerning the dynamical time evolution, we obtain a theory with two first-class and two second-class constraints in phase space. We calculate explicitly the corresponding Dirac brackets involving both vector fields. We use the Senjanovic procedure to implement the second-class constraints and the Batalin-Fradkin-Vilkovisky path integral quantization scheme to deal with the symmetries generated by the first-class constraints. The physical interpretation of the results turns out to be simpler due to the reduced derivatives order permeating the equations of motion, Dirac brackets and effective action.

  6. Hierarchical partial order ranking.

    PubMed

    Carlsen, Lars

    2008-09-01

    Assessing the potential impact on environmental and human health from the production and use of chemicals or from polluted sites involves a multi-criteria evaluation scheme. A priori several parameters are to address, e.g., production tonnage, specific release scenarios, geographical and site-specific factors in addition to various substance dependent parameters. Further socio-economic factors may be taken into consideration. The number of parameters to be included may well appear to be prohibitive for developing a sensible model. The study introduces hierarchical partial order ranking (HPOR) that remedies this problem. By HPOR the original parameters are initially grouped based on their mutual connection and a set of meta-descriptors is derived representing the ranking corresponding to the single groups of descriptors, respectively. A second partial order ranking is carried out based on the meta-descriptors, the final ranking being disclosed though average ranks. An illustrative example on the prioritization of polluted sites is given.

  7. Second order gauge theory

    SciTech Connect

    Cuzinatto, R.R. . E-mail: rodrigo@ift.unesp.br; Melo, C.A.M. de . E-mail: cassius.anderson@gmail.com; Pompeia, P.J. . E-mail: pompeia@ift.unesp.br

    2007-05-15

    A gauge theory of second order in the derivatives of the auxiliary field is constructed following Utiyama's program. A novel field strength G = {partial_derivative}F + fAF arises besides the one of the first order treatment, F = {partial_derivative}A - {partial_derivative}A + fAA. The associated conserved current is obtained. It has a new feature: topological terms are determined from local invariance requirements. Podolsky Generalized Eletrodynamics is derived as a particular case in which the Lagrangian of the gauge field is L {sub P} {proportional_to} G {sup 2}. In this application the photon mass is estimated. The SU (N) infrared regime is analysed by means of Alekseev-Arbuzov-Baikov's Lagrangian.

  8. Plant anesthesia supports similarities between animals and plants

    PubMed Central

    Grémiaux, Alexandre; Yokawa, Ken; Mancuso, Stefano; Baluška, František

    2014-01-01

    The French scientist Claude Bernard (1813–1878) is famous for his discoveries in physiology and for introducing rigorous experimental methods to medicine and biology. One of his major technical innovations was the use of chemicals in order to disrupt normal physiological function to test hypotheses. But less known is his conviction that the physiological functions of all living organisms rely on the same underlying principles. He hypothesized that similarly to animals, plants are also able to sense changes in their environment. He called this ability “sensitivity.” In order to test his ideas, he performed anesthesia on plants and the results of these experiments were presented in 1878 in “Leçonssur les phénomènes de la vie communs aux animaux et aux végétaux.”1 The phenomena described by Claude Bernard more than a century ago are not fully understood yet. Here, we present a short overview of anesthetic effects in animals and we discuss how anesthesia affects plant movements, seed germination, and photosynthesis. Surprisingly, these phenomena may have ecological relevance, since stressed plants generate anesthetics such as ethylene and ether. Finally, we discuss Claude Bernard's interpretations and conclusions in the perspective of modern plant sciences. PMID:24476640

  9. A High-Order Finite Spectral Volume Method for Conservation Laws on Unstructured Grids

    NASA Technical Reports Server (NTRS)

    Wang, Z. J.; Liu, Yen; Kwak, Dochan (Technical Monitor)

    2001-01-01

    A time accurate, high-order, conservative, yet efficient method named Finite Spectral Volume (FSV) is developed for conservation laws on unstructured grids. The concept of a 'spectral volume' is introduced to achieve high-order accuracy in an efficient manner similar to spectral element and multi-domain spectral methods. In addition, each spectral volume is further sub-divided into control volumes (CVs), and cell-averaged data from these control volumes is used to reconstruct a high-order approximation in the spectral volume. Riemann solvers are used to compute the fluxes at spectral volume boundaries. Then cell-averaged state variables in the control volumes are updated independently. Furthermore, TVD (Total Variation Diminishing) and TVB (Total Variation Bounded) limiters are introduced in the FSV method to remove/reduce spurious oscillations near discontinuities. A very desirable feature of the FSV method is that the reconstruction is carried out only once, and analytically, and is the same for all cells of the same type, and that the reconstruction stencil is always non-singular, in contrast to the memory and CPU-intensive reconstruction in a high-order finite volume (FV) method. Discussions are made concerning why the FSV method is significantly more efficient than high-order finite volume and the Discontinuous Galerkin (DG) methods. Fundamental properties of the FSV method are studied and high-order accuracy is demonstrated for several model problems with and without discontinuities.

  10. Sensorimotor rhythm-based brain computer interface (BCI): model order selection for autoregressive spectral analysis

    NASA Astrophysics Data System (ADS)

    McFarland, Dennis J.; Wolpaw, Jonathan R.

    2008-06-01

    People can learn to control EEG features consisting of sensorimotor rhythm amplitudes and can use this control to move a cursor in one or two dimensions to a target on a screen. Cursor movement depends on the estimate of the amplitudes of sensorimotor rhythms. Autoregressive models are often used to provide these estimates. The order of the autoregressive model has varied widely among studies. Through analyses of both simulated and actual EEG data, the present study examines the effects of model order on sensorimotor rhythm measurements and BCI performance. The results show that resolution of lower frequency signals requires higher model orders and that this requirement reflects the temporal span of the model coefficients. This is true for both simulated EEG data and actual EEG data during brain-computer interface (BCI) operation. Increasing model order, and decimating the signal were similarly effective in increasing spectral resolution. Furthermore, for BCI control of two-dimensional cursor movement, higher model orders produced better performance in each dimension and greater independence between horizontal and vertical movements. In sum, these results show that autoregressive model order selection is an important determinant of BCI performance and should be based on criteria that reflect system performance.

  11. Meson-baryon effective chiral Lagrangians at order p4

    NASA Astrophysics Data System (ADS)

    Jiang, Shao-Zhou; Chen, Qing-Sen; Liu, Yan-Rui

    2017-01-01

    We construct the three-flavor Lorentz-invariant meson-baryon chiral Lagrangians at the order p4, with which a full one-loop investigation may be performed. One obtains 540 independent terms. The processes with the minimal number of mesons and photons to which this order of Lagrangians may contribute are also presented.

  12. Competing Orders and Anomalies

    PubMed Central

    Moon, Eun-Gook

    2016-01-01

    A conservation law is one of the most fundamental properties in nature, but a certain class of conservation “laws” could be spoiled by intrinsic quantum mechanical effects, so-called quantum anomalies. Profound properties of the anomalies have deepened our understanding in quantum many body systems. Here, we investigate quantum anomaly effects in quantum phase transitions between competing orders and striking consequences of their presence. We explicitly calculate topological nature of anomalies of non-linear sigma models (NLSMs) with the Wess-Zumino-Witten (WZW) terms. The non-perturbative nature is directly related with the ’t Hooft anomaly matching condition: anomalies are conserved in renormalization group flow. By applying the matching condition, we show massless excitations are enforced by the anomalies in a whole phase diagram in sharp contrast to the case of the Landau-Ginzburg-Wilson theory which only has massive excitations in symmetric phases. Furthermore, we find non-perturbative criteria to characterize quantum phase transitions between competing orders. For example, in 4D, we show the two competing order parameter theories, CP(1) and the NLSM with WZW, describe different universality class. Physical realizations and experimental implication of the anomalies are also discussed. PMID:27499184

  13. Competing Orders and Anomalies

    NASA Astrophysics Data System (ADS)

    Moon, Eun-Gook

    2016-08-01

    A conservation law is one of the most fundamental properties in nature, but a certain class of conservation “laws” could be spoiled by intrinsic quantum mechanical effects, so-called quantum anomalies. Profound properties of the anomalies have deepened our understanding in quantum many body systems. Here, we investigate quantum anomaly effects in quantum phase transitions between competing orders and striking consequences of their presence. We explicitly calculate topological nature of anomalies of non-linear sigma models (NLSMs) with the Wess-Zumino-Witten (WZW) terms. The non-perturbative nature is directly related with the ’t Hooft anomaly matching condition: anomalies are conserved in renormalization group flow. By applying the matching condition, we show massless excitations are enforced by the anomalies in a whole phase diagram in sharp contrast to the case of the Landau-Ginzburg-Wilson theory which only has massive excitations in symmetric phases. Furthermore, we find non-perturbative criteria to characterize quantum phase transitions between competing orders. For example, in 4D, we show the two competing order parameter theories, CP(1) and the NLSM with WZW, describe different universality class. Physical realizations and experimental implication of the anomalies are also discussed.

  14. Competing Orders and Anomalies.

    PubMed

    Moon, Eun-Gook

    2016-08-08

    A conservation law is one of the most fundamental properties in nature, but a certain class of conservation "laws" could be spoiled by intrinsic quantum mechanical effects, so-called quantum anomalies. Profound properties of the anomalies have deepened our understanding in quantum many body systems. Here, we investigate quantum anomaly effects in quantum phase transitions between competing orders and striking consequences of their presence. We explicitly calculate topological nature of anomalies of non-linear sigma models (NLSMs) with the Wess-Zumino-Witten (WZW) terms. The non-perturbative nature is directly related with the 't Hooft anomaly matching condition: anomalies are conserved in renormalization group flow. By applying the matching condition, we show massless excitations are enforced by the anomalies in a whole phase diagram in sharp contrast to the case of the Landau-Ginzburg-Wilson theory which only has massive excitations in symmetric phases. Furthermore, we find non-perturbative criteria to characterize quantum phase transitions between competing orders. For example, in 4D, we show the two competing order parameter theories, CP(1) and the NLSM with WZW, describe different universality class. Physical realizations and experimental implication of the anomalies are also discussed.

  15. Fauna Europaea - Orthopteroid orders.

    PubMed

    Heller, Klaus-Gerhard; Bohn, Horst; Haas, Fabian; Willemse, Fer; de Jong, Yde

    2016-01-01

    Fauna Europaea provides a public web-service with an index of scientific names (including important synonyms) of all extant European terrestrial and freshwater animals, their geographical distribution at the level of countries and major islands (west of the Urals and excluding the Caucasus region), and some additional information. The Fauna Europaea project comprises about 230,000 taxonomic names, including 130,000 accepted species and 14,000 accepted subspecies, which is much more than the originally projected number of 100,000 species. Fauna Europaea represents a huge effort by more than 400 contributing specialists throughout Europe and is a unique (standard) reference suitable for many users in science, government, industry, nature conservation and education. The "Orthopteroid orders" is one of the 58 Fauna Europaea major taxonomic groups. It contains series of mostly well-known insect orders: Embiodea (webspinners), Dermaptera (earwigs), Phasmatodea (walking sticks), Orthoptera s.s. (grasshoppers, crickets, bush-crickets) and Dictyoptera with the suborders Mantodea (mantids), Blattaria (cockroaches) and Isoptera (termites). For the Orthopteroid orders, data from 35 families containing 1,371 species are included in this paper.

  16. Source time function properties indicate a strain drop independent of earthquake depth and magnitude

    NASA Astrophysics Data System (ADS)

    Vallee, Martin

    2014-05-01

    Movement of the tectonic plates leads to strain build-up in the Earth, which can be released during earthquakes when one side of a seismic fault suddenly slips with respect to the other one. The amount of seismic strain release (or 'strain drop') is thus a direct measurement of a basic earthquake property, i.e. the ratio of seismic slip over the dimension of the ruptured fault. SCARDEC, a recently developed method, gives access to this information through the systematic determination of earthquakes source time functions (STFs). STFs describe the integrated spatio-temporal history of the earthquake process, and their maximum value can be related to the amount of stress or strain released during the earthquake. Here I analyse all earthquakes with magnitudes greater than 6 occurring in the last 20 years, and thus provide a catalogue of 1700 STFs which sample all the possible seismic depths. Analysis of this new database reveals that the strain drop remains on average the same for all earthquakes, independent of magnitude and depth. In other words, it is shown that, independent of the earthquake depth, magnitude 6 and larger earthquakes keep on average a similar ratio between seismic slip and dimension of the main slip patch. This invariance implies that deep earthquakes are even more similar than previously thought to their shallow counterparts, a puzzling finding as shallow and deep earthquakes should originate from different physical mechanisms. Concretely, the ratio between slip and patch dimension is on the order of 10-5-10-4, with extreme values only 8 times lower or larger at the 95% confidence interval. Besides the implications for mechanisms of deep earthquake generation, this limited variability has practical implications for realistic earthquake scenarios.

  17. Teaching the Declaration of Independence. ERIC Digest.

    ERIC Educational Resources Information Center

    Patrick, John J.

    The Declaration of Independence is the founding document of the United States. It is part of the social studies core curriculum in U.S. schools. By the time they graduate from high school, students are expected to know the main ideas in the Declaration of Independence and their significance. This digest discusses: (1) the origins of the…

  18. The Public Stake in Independent Higher Education.

    ERIC Educational Resources Information Center

    Olson, Lawrence

    The importance of higher education in providing the skilled labor force needed to respond to changing technologies; the cost-efficiency of independent higher education; and implications for government, industry, and independent higher education are considered. The most readily changing technologies include computers and electronics, satellite…

  19. 33 CFR 159.93 - Independent supporting.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 33 Navigation and Navigable Waters 2 2014-07-01 2014-07-01 false Independent supporting. 159.93 Section 159.93 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) POLLUTION MARINE SANITATION DEVICES Design, Construction, and Testing § 159.93 Independent supporting....

  20. 33 CFR 159.93 - Independent supporting.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 2 2010-07-01 2010-07-01 false Independent supporting. 159.93 Section 159.93 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) POLLUTION MARINE SANITATION DEVICES Design, Construction, and Testing § 159.93 Independent supporting....