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Sample records for organic matter remineralization

  1. Temperature and oxygen dependence of the remineralization of organic matter

    NASA Astrophysics Data System (ADS)

    Laufkötter, C.; John, Jasmin G.; Stock, Charles A.; Dunne, John P.

    2017-07-01

    Accurate representation of the remineralization of sinking organic matter is crucial for reliable projections of the marine carbon cycle. Both water temperature and oxygen concentration are thought to influence remineralization rates, but limited data constraints have caused disagreement concerning the degree of these influences. We analyze a compilation of particulate organic carbon (POC) flux measurements from 19 globally distributed sites. Our results indicate that the attenuation of the flux of particulate organic matter depends on temperature with a Q10 between 1.5 and 2.01, and on oxygen described by a half-saturation constant between 4 and 12 μmol/L. We assess the impact of the temperature and oxygen dependence in the biogeochemistry model Carbon, Ocean Biogeochemistry, and Lower Trophics, coupled to Geophysical Fluid Dynamics Laboratory's Earth System Model ESM2M. The new remineralization parameterization results in shallower remineralization in the low latitudes but deeper remineralization in the high latitudes, redistributing POC flux toward the poles. It also decreases the volume of the oxygen minimum zones, partly addressing a long-standing bias in global climate models. Extrapolating temperature-dependent remineralization rates to the surface (i.e., beyond the depth range of POC flux data) resulted in rapid recycling and excessive surface nutrients. Surface nutrients could be ameliorated by reducing near-surface rates in a manner consistent with bacterial colonization, suggesting the need for improved remineralization constraints within the euphotic zone. The temperature and oxygen dependence cause an additional 10% decrease in global POC flux at 500 m depth, but no significant change in global POC flux at 2000 m under the RCP8.5 future projection.

  2. Temperature-dependent remineralization of organic matter - small impacts on the carbon cycle

    NASA Astrophysics Data System (ADS)

    Laufkötter, Charlotte; John, Jasmin; Stock, Charles; Dunne, John

    2017-04-01

    The temperature dependence of remineralization of organic matter is regularly mentioned as important but unconstrained factor, with the potential to cause considerable uncertainty in projections of marine export production, carbon sequestration and oceanic carbon uptake. We have recently presented evidence for a temperature dependence of the particulate organic matter (POC) flux to depth, based on a compilation of observations. Here, we explore the impacts of the new temperature dependence on net primary production, POC flux and oceanic carbon uptake in the ecosystem model COBALT coupled to GFDL's ESM2M Coupled Climate-Carbon Earth System Model. We have implemented two remineralization schemes: COBALT-R1 includes a temperature dependence using parameter values according to our data analysis. COBALT-R1 shows very high remineralization in warm surface waters. The data used to constrain it, however, comes from colder water below 150m. Colonization of sinking material occurs throughout the euphotic zone, potentially reducing remineralization in the immediate vicinity of the ocean surface relative to R1 rates [Mislan et al., 2014]. We thus considered a second model version (COBALT-R2) that decreases remineralization towards the surface but ramped up remineralization rates to R1 values below 150m. After 1300 years of spin-up, the effects of the temperature dependence are most visible in the intermediate part of the water column (150 - 1500m), with stronger remineralization in the warmer upper water but weaker remineralization below, such that the carbon flux at 2000m is barely affected. Also, both COBALT-R1 and COBALT-R2 simulate lower POC flux in the low latitudes and higher POC flux in high latitudes compared to the original model version. In terms of future changes, COBALT-R1 projects an increase in NPP while COBALT-R2 projects a moderate decrease. However, the percentaged decrease in POC flux at 100m is identical in both model versions and the original COBALT

  3. Enhanced rates of particulate organic matter remineralization by microzooplankton are diminished by added ballast minerals

    NASA Astrophysics Data System (ADS)

    Le Moigne, F. A. C.; Gallinari, M.; Laurenceau, E.; De La Rocha, C. L.

    2013-09-01

    To examine the potentially competing influences of microzooplankton and calcite mineral ballast on organic matter remineralization, we incubated diatoms in darkness in rolling tanks with and without added calcite minerals (coccoliths) and microzooplankton (rotifers). Concentrations of particulate organic matter (POM in suspension or in aggregates), of dissolved organic matter (DOM), and of dissolved inorganic nutrients were monitored over 8 days. The presence of rotifers enhanced the remineralization of ammonium and phosphate, but not dissolved silicon, from the biogenic particulate matter, up to 40% of which became incorporated into aggregates early in the experiment. Added calcite resulted in rates of excretion of ammonium and phosphate by rotifers that were depressed by 67% and 36%, respectively, demonstrating the potential for minerals to inhibit the destruction of POM by zooplankton in the water column. Lastly, the presence of the rotifers and added calcite minerals resulted in a more rapid initial rate of aggregation, although not a greater overall amount of aggregation during the experiment.

  4. Enhanced rates of particulate organic matter remineralization by microzooplankton are diminished by added ballast minerals

    NASA Astrophysics Data System (ADS)

    Le Moigne, F. A. C.; Gallinari, M.; Laurenceau, E.; De La Rocha, C. L.

    2013-02-01

    To examine the potentially competing influences of microzooplankton and calcite mineral ballast on organic matter remineralization, we incubated diatoms in darkness in rolling tanks with and without added calcite minerals (coccoliths) and microzooplankton (rotifers). Concentrations of particulate organic matter (POM), suspended or in aggregates, of dissolved organic matter (DOM), and of dissolved inorganic nutrients were monitored over 8 days. The presence of rotifers enhanced the remineralization of ammonium and phosphate, but not dissolved silicon, from the biogenic material, up to 40% of which became incorporated into aggregates early in the experiment. Added calcite resulted in rates of excretion of ammonium and phosphate by rotifers that were depressed by 67% and 36%, respectively, demonstrating the potential for minerals to inhibit the destruction of POM in the water column by zooplankton. Lastly, the presence of the rotifers and added calcite minerals resulted in more rapid kinetics of aggregation, although not a greater overall amount of aggregation during the experiment.

  5. Is DOC the main source of organic matter remineralization in the ocean water column?

    NASA Astrophysics Data System (ADS)

    Lefévre, D.; Denis, M.; Lambert, C. E.; Miquel, J.-C.

    1996-02-01

    Recent interpretations of carbon flux data and deep-sea processes have led to a reconsideration of the role of dissolved organic carbon (DOC) in supporting water column remineralization and other mid-water biogeochemical transformations (Suzuki et al., 1985; Cho and Azam, 1988; Karl et al., 1988; Christensen et al., 1989; Naqvi and Shailaja, 1993). To date, there have been no direct comparisons of particulate carbon flux data with water column metabolic rates. Here, for the first time, particulate carbon flux and respiratory electron transport activity (from which metabolic CO 2 production is derived), have been monitored simultaneously for one year in the same area of the northwestern Mediterranean Sea. In the aphotic layer (200-1000 m), particulate organic carbon (POC) can support only 20% of the overall organic matter remineralization. Remineralization rates are consistent with recent calculations of DOC exported from the euphotic layer in this area, confirming the vital importance of DOC in maintaining deep-water metabolism. This finding would apply to other regions of mesotrophic and oligotrophic production and thus affect our understanding of carbon recycling in the water column, new production and O 2 utilization.

  6. A priming effect of benthic gastropod mucus on sedimentary organic matter remineralization

    NASA Astrophysics Data System (ADS)

    Hannides, A. K.; Aller, R. C.

    2016-02-01

    Mucous gels are produced by benthic animals rapidly and in copious amounts, and have previously been shown to significantly affect diffusion rates of redox-sensitive ions and organic compounds in sediment pore waters. They are also a highly likely priming substrate whose addition in modest amounts affects sedimentary organic matter remineralization. We tested the priming effect of benthic infaunal mucus using secretions of the common gastropod Neverita duplicata as model substrate. Their composition is typical of marine molluscan mucus, consisting primarily of water (>96% by weight), which is in relative equilibrium with seawater. Salt-free dry weight constitutes 0.7% and 0.6% of total pedal and hypobranchial mucus, respectively. The C:N ratios of pedal and hypobranchial mucus indicate that the organic component consists of a mucopolysaccharide-glycoprotein complex that varies depending on its function, while low C:S ratios of the insoluble component and positive staining with Alcian Blue dye are indicative of S-ester and alkyl-SO42- groups bridging mucopolysaccharide and glycoprotein components. Anoxic incubations of pedal mucus of N. duplicata, sediment, and mucus-sediment mixture, resulted in the anaerobic generation of ΣCO2 and NH4+ at ratios lower than initial C:N ratios, indicating the preferential decomposition of N-rich moieties. Production rates of SCO2 and NH4+ in mucus-sediment incubations are higher, by 9±16% and 29±11%, respectively, than those predicted from linear addition of mucus-only and sediment-only rates. The statistically significant accelerated remineralization rate of N in the presence of modest mucus contribution (0.2% of total N), suggests that benthic mucus addition affects sedimentary organic matter remineralization processes through a "priming" effect.

  7. Remineralization and preservation of the Organic Matter (OM) in the Peruvian Oxygen Minimum Zone

    NASA Astrophysics Data System (ADS)

    Bretagnon, M.; Paulmier, A.; Garcon, V.; Dewitte, B.; Maes, C.; Campos, F.; Carrasco, E.; Coppola, L.; Depretz de Gesincourt, O.; Gojak, C.; Grelet, J.; Illig, S.; Leblond, N.; Lefevre, D.; Martinez, P.; Oschlies, A.; Panagiotopoulos, C.; Scouarnec, L.; Velazco, F.

    2016-02-01

    The intense surface production in the Eastern Boundary Upwelling Systems (EBUS), linked to the low subsurface ventilation, leads to the formation of the Oxygen Minimum Zone (OMZ). The degradation of Organic Matter (OM) by respiration or remineralization impacts climate (ocean carbon sequestration; greenhouse gases emission (e.g. N2O, CO2)) and ecosystems (nitrogen loss; toxic gas (e.g. H2S) production). Due to the O2 stress, OM fate is an OMZ key-issue. On one hand, the low O2 concentration would imply OM preservation, enhancing the export to the sediments. On the other hand, the intense bacteria activity would imply OM recycling. The Peruvian EBUS, one of the most productive systems with the shallowest oxycline, is the perfect case study to investigate both hypotheses. In order to study the particles fluxes and its variability, sediment traps in the oxycline (35 m) and OMZ core (150 m) were deployed on an instrumented moored line off Lima (12°S) in 2013-2014, as part of the AMOP project (Activities of research dedicated to the Minimum of Oxygen in the eastern Pacific).The particles proportion which reaches the deep trap allows to define mathematically a vertical transfer function, suggesting predominant remineralization and preservation configurations. Concerning OM quality, carbon and nitrogen fluxes are proportional to the matter fluxes, contrary to phosphorus and biogenic silica fluxes. The different configurations derived from the transfer function analysis in terms of both OM quantity and quality can mainly be linked to oxygenation conditions, with a potential remineralization predominance associated with O2 concentration at the oxycline higher than a threshold of 5 µmol/kg. Oxygenation events are alternately associated with a specific influence of SubTropical Water, more or less oxygenated (Surface (STSW) or Under (STUW), respectively).

  8. Organic Matter Remineralization Predominates Phosphorus Cycling in the Mid-Bay Sediments in the Chesapeake Bay

    SciTech Connect

    Sunendra, Joshi R.; Kukkadapu, Ravi K.; Burdige, David J.; Bowden, Mark E.; Sparks, Donald L.; Jaisi, Deb P.

    2015-05-19

    The Chesapeake Bay, the largest and most productive estuary in the US, suffers from varying degrees of water quality issues fueled by both point and non–point source nutrient sources. Restoration of the bay is complicated by the multitude of nutrient sources, their variable inputs and hydrological conditions, and complex interacting factors including climate forcing. These complexities not only restrict formulation of effective restoration plans but also open up debates on accountability issues with nutrient loading. A detailed understanding of sediment phosphorus (P) dynamics enables one to identify the exchange of dissolved constituents across the sediment- water interface and aid to better constrain mechanisms and processes controlling the coupling between the sediments and the overlying waters. Here we used phosphate oxygen isotope ratios (δ18Op) in concert with sediment chemistry, XRD, and Mössbauer spectroscopy on the sediment retrieved from an organic rich, sulfidic site in the meso-haline portion of the mid-bay to identify sources and pathway of sedimentary P cycling and to infer potential feedback effect on bottom water hypoxia and surface water eutrophication. Isotope data indicate that the regeneration of inorganic P from organic matter degradation (remineralization) is the predominant, if not sole, pathway for authigenic P precipitation in the mid-bay sediments. We interpret that the excess inorganic P generated by remineralization should have overwhelmed any bottom-water and/or pore-water P derived from other sources or biogeochemical processes and exceeded saturation with respect to authigenic P precipitation. It is the first research that identifies the predominance of remineralization pathway against remobilization (coupled Fe-P cycling) pathway in the Chesapeake Bay. Therefore, these results are expected to have significant implications for the current understanding of P cycling and benthic-pelagic coupling in the bay, particularly on the

  9. Organic matter remineralization predominates phosphorus cycling in the mid-Bay sediments in the Chesapeake Bay.

    PubMed

    Joshi, Sunendra R; Kukkadapu, Ravi K; Burdige, David J; Bowden, Mark E; Sparks, Donald L; Jaisi, Deb P

    2015-05-19

    Chesapeake Bay, the largest and most productive estuary in the U.S., suffers from varying degrees of water quality issues fueled by both point and nonpoint nutrient sources. Restoration of the Bay is complicated by the multitude of nutrient sources, their variable inputs, and complex interaction between imported and regenerated nutrients. These complexities not only restrict formulation of effective restoration plans but also open up debates on accountability issues with nutrient loading. A detailed understanding of sediment phosphorus (P) dynamics provides information useful in identifying the exchange of dissolved constituents across the sediment-water interface as well as helps to better constrain the mechanisms and processes controlling the coupling between sediments and the overlying waters. Here we used phosphate oxygen isotope ratios (δ(18)O(P)) in concert with sediment chemistry, X-ray diffraction, and Mössbauer spectroscopy on sediments retrieved from an organic rich, sulfidic site in the mesohaline portion of the mid-Bay to identify sources and pathway of sedimentary P cycling and to infer potential feedbacks on bottom water hypoxia and surface water eutrophication. Authigenic phosphate isotope data suggest that the regeneration of inorganic P from organic matter degradation (remineralization) is the predominant, if not sole, pathway for authigenic P precipitation in the mid-Bay sediments. This indicates that the excess inorganic P generated by remineralization should have overwhelmed any pore water and/or bottom water because only a fraction of this precipitates as authigenic P. This is the first research that identifies the predominance of remineralization pathway and recycling of P within the Chesapeake Bay. Therefore, these results have significant implications on the current understanding of sediment P cycling and P exchange across the sediment-water interface in the Bay, particularly in terms of the sources and pathways of P that sustain hypoxia

  10. Regional variability in particulate organic matter remineralization depths: an optimization and sensitivity study using a fast Earth system model

    NASA Astrophysics Data System (ADS)

    Wilson, Jamie; Barker, Stephen; Ridgwell, Andy

    2015-04-01

    Nutrient distributions and atmospheric CO2 concentrations are sensitive to changes in the global average depth of particulate organic matter (POM) remineralization in models. Model optimization studies have used this sensitivity to find global mean remineralization depths that result in the statistically best fit to tracer observations such as phosphate (PO4). However, recent global syntheses of sediment trap data have started to suggest the existence of significant spatial variability in the depth of POM remineralization. A number of hypothetical mechanisms have been proposed to explain this variability invoking a wide range of feedbacks on atmospheric CO2. Progress has been hindered by the relatively low sampling density of sediment trap data. In response to this, we explore whether there is an optimal set of regionally variable remineralization depths in an Earth system model that best fits observed PO4 fields and how robust these solutions are. We develop a new computationally fast phosphorous-only version of the Earth system model GENIE using a transport matrix to represent steady-state circulation. The ocean is divided into 15 biogeochemical biomes within which the remineralization depth is an independent parameter. Latin hypercube sampling is used to produce an ensemble of runs that efficiently sample across the range of potential combinations of remineralization depths, producing probability distributions for each region. Despite sensitivity to the global remineralization depth, we find that PO4 is actually relatively insensitive to regional changes in remineralization. An optimal combination of remineralization depths in the Atlantic is found that predicts deeper remineralization in the low latitudes and shallower at high latitudes, matching sediment trap observations. Shallow remineralization is also predicted in the North Pacific. However, remineralization depths in the Southern Ocean, South and Equatorial Pacific, and Indian Ocean cannot be successfully

  11. CaCO 3 dissolution in California continental margin sediments: The influence of organic matter remineralization

    NASA Astrophysics Data System (ADS)

    Jahnke, Richard A.; Craven, Deborah B.; McCorkle, Daniel C.; Reimers, Clare E.

    1997-09-01

    In situ benthic flux chamber and oxygen microelectrode and shipboard porewater results have been used to quantify sea floor dissolution of CaCO 3 on the continental rise adjacent to central California, USA. The porewater distributions and benthic fluxes of O 2, NO 3-, TA, Ca 2+, δ 13C, and TIC are interpreted using a numerical simulation of organic matter remineralization and CaCO 3 dissolution in marine sediments. The processes considered in the simulation include: organic matter oxidation by O 2, NO 3, and SO 42-; CaCO 3 dissolution and precipitation; HS - and NH 4+ oxidation; and sediment mixing and sediment accumulation. Calculated benthic fluxes of O 2, NO 3-, TA, TIC, δ 13C, and Ca 2+; porewater concentrations of O 2, NO 3-, and NH 4+; and sediment distributions of organic carbon, CaCO 3, excess 210Pb, and 14C agree well with the measurements. Benthic fluxes of alkalinity and inferred CaCO 3 dissolution rates cannot be explained on the basis of dissolution driven solely by bottom water undersaturation. If the influence of metabolically-produced CO 2 is included, benthic fluxes are fully reconciled, however. This is in agreement with benthic chamber Ca 2+ and δ 13C results that independently imply substantial CaCO 3 dissolution in these sediments. The above observations are in contrast to those reported by Jahnke et al. (1994) for the west African continental rise and the western equatorial Pacific where 1-G diagenetic models predict dissolution fluxes larger than observed with benthic flux chambers. We conclude that the extent of metabolic CaCO 3 dissolution may vary regionally. Numerous factors, such as the depth of metabolic CO 2 production and CaCO 3 dissolution kinetics, are known or predicted to influence metabolic dissolution. Among the factors that should be considered in reconciling these observations are: (l) the extent to which sulfate reduction and reoxidation reactions may influence acid-base properties in surface sediments and (2) the total

  12. Geochemical ecosystem engineering by the mud shrimp Upogebia pugettensis (Crustacea: Thalassinidae) in Yaquina Bay, Oregon: density-dependent effects on organic matter remineralization and nutrient cycling

    EPA Science Inventory

    We investigated the effect of the thalassinid mud shrimp Upogebia pugettensis on organic matter and nutrient cycling on Idaho Flat, an intertidal flat in the Yaquina River estuary, Oregon. Field studies were conducted to measure carbon and nitrogen remineralization rates and bent...

  13. Geochemical ecosystem engineering by the mud shrimp Upogebia pugettensis (Crustacea: Thalassinidae) in Yaquina Bay, Oregon: density-dependent effects on organic matter remineralization and nutrient cycling

    EPA Science Inventory

    We investigated the effect of the thalassinid mud shrimp Upogebia pugettensis on organic matter and nutrient cycling on Idaho Flat, an intertidal flat in the Yaquina River estuary, Oregon. Field studies were conducted to measure carbon and nitrogen remineralization rates and bent...

  14. Marine phosphate oxygen isotopes and organic matter remineralization in the oceans.

    PubMed

    Colman, Albert S; Blake, Ruth E; Karl, David M; Fogel, Marilyn L; Turekian, Karl K

    2005-09-13

    We show that the isotopic composition of oxygen (delta18O) in dissolved inorganic phosphate (Pi) reveals the balance between Pi transport and biological turnover rates in marine ecosystems. Our delta18Op of Pi (delta18Op) measurements herein indicate the importance of cell lysis in the regeneration of Pi in the euphotic zone. Depth profiles of the delta18Op in the Atlantic and Pacific Oceans are near a temperature-dependent isotopic equilibrium with water. Small deviations from equilibrium below the thermocline suggest that P remineralization in the deep ocean is a byproduct of microbial carbon and energy requirements. However, isotope effects associated with phosphohydrolase enzymes involved in P remineralization are quite large and could potentially lead to significant disequilibration of Pi oxygen. The observed near equilibration of deep water Pi likely calls for continued slow rates of microbial uptake and release of Pi and/or extracellular pyrophosphatase-mediated oxygen exchange between water and Pi along the deep water flow path.

  15. Marine phosphate oxygen isotopes and organic matter remineralization in the oceans

    PubMed Central

    Colman, Albert S.; Blake, Ruth E.; Karl, David M.; Fogel, Marilyn L.; Turekian, Karl K.

    2005-01-01

    We show that the isotopic composition of oxygen (δ18O) in dissolved inorganic phosphate (Pi) reveals the balance between Pi transport and biological turnover rates in marine ecosystems. Our δ18Op of Pi (δ18Op) measurements herein indicate the importance of cell lysis in the regeneration of Pi in the euphotic zone. Depth profiles of the δ18Op in the Atlantic and Pacific Oceans are near a temperature-dependent isotopic equilibrium with water. Small deviations from equilibrium below the thermocline suggest that P remineralization in the deep ocean is a byproduct of microbial carbon and energy requirements. However, isotope effects associated with phosphohydrolase enzymes involved in P remineralization are quite large and could potentially lead to significant disequilibration of Pi oxygen. The observed near equilibration of deep water Pi likely calls for continued slow rates of microbial uptake and release of Pi and/or extracellular pyrophosphatase-mediated oxygen exchange between water and Pi along the deep water flow path. PMID:16141319

  16. Effects of stratification, organic matter remineralization and bathymetry on summertime oxygen distribution in the Bohai Sea, China

    NASA Astrophysics Data System (ADS)

    Zhao, Hua-De; Kao, Shuh-Ji; Zhai, Wei-Dong; Zang, Kun-Peng; Zheng, Nan; Xu, Xue-Mei; Huo, Cheng; Wang, Ju-Ying

    2017-02-01

    The Bohai Sea, a semi-enclosed shallow coastal sea with increasing nutrient loads, is susceptible to seasonal oxygen deficiency in its bottom waters, similar to many other areas of the worlds' coastal oceans. We examined the dissolved oxygen (DO) distribution in the Bohai during August 2014. Two oxygen-deficient zones (DO<92 μmol O2 kg-1) with a minimum DO of 80 μmol O2 kg-1 were documented. The area and volume of bottom oxygen-deficient water were 756 km2 and 7820×106 m3, with a mean thickness of 10 m. Thus, the Bohai is second to the Changjiang estuary in its oxygen-deficient zone size among China's coastal waters. We classified three hydrographic areas that dictated the distribution of DO: 1) the shallow well-mixed zone; 2) the laterally-open stratified zone; and 3) the isolated stratified zone. Vertical mixing dominated the shallow well-mixed zone leading to homogeneous DO in the water column. The laterally-open stratified zone was influenced by high DO and low temperature inflow through the northern Bohai Strait. The isolated stratified zones, i.e., the low DO areas, were found in depressed regions. The stoichiometric relationship between DO consumption and the corresponding enrichment of dissolved inorganic carbon suggested that the aerobic respiration of organic matter contributed to the oxygen-depletion in the isolated stratified zone. Overall, the bottom DO distribution in the Bohai system was controlled largely by lateral DO exchange modified by bathymetric features, while superimposed on that was the build-up of stratification caused by summer heating and the remineralization of organics sourced from spring phytoplankton bloom.

  17. Barium in Twilight Zone suspended matter as a potential proxy for particulate organic carbon remineralization: Results for the North Pacific

    SciTech Connect

    Dehairs, F.; Jacquet, S.; Savoye, N.; Van Mooy, B.A.S.; Buesseler, K.; Bishop, J.K.B.; Lamborg, C.H.; Elskens, M.; Baeyens, W.; Boyd, P.W.; Casciotti, K.L.; Monnin, C.

    2008-04-10

    This study focuses on the fate of exported organic carbon in the twilight zone at two contrasting environments in the North Pacific: the oligotrophic ALOHA site (22 degrees 45 minutes N 158 degrees W; Hawaii; studied during June-July 2004) and the mesotrophic Subarctic Pacific K2 site (47 degrees N, 161 degrees W; studied during July-August 2005). Earlier work has shown that non-lithogenic, excess particulate Ba (Ba{sub xs}) in the mesopelagic water column is a potential proxy of organic carbon remineralization. In general Ba{sub xs} contents were significantly larger at K2 than at ALOHA. At ALOHA the Ba{sub xs} profiles from repeated sampling (5 casts) showed remarkable consistency over a period of three weeks, suggesting that the system was close to being at steady state. In contrast, more variability was observed at K2 (6 casts sampled) reflecting the more dynamic physical and biological conditions prevailing in this environment. While for both sites Ba{sub xs} concentrations increased with depth, at K2 a clear maximum was present between the base of the mixed layer at around 50m and 500m, reflecting production and release of Ba{sub xs}. Larger mesopelagic Ba{sub xs} contents and larger bacterial production in the twilight zone at the K2 site indicate that more material was exported from the upper mixed layer for bacterial degradation deeper, compared to the ALOHA site. Furthermore, application of a published transfer function (Dehairs et al., 1997) relating oxygen consumption to the observed Ba{sub xs} data indicated that the latter were in good agreement with bacterial respiration, calculated from bacterial production. These results corroborate earlier findings highlighting the potential of Ba{sub xs} as a proxy for organic carbon remineralization. The range of POC remineralization rates calculated from twilight zone excess particulate Ba contents did also compare well with the depth dependent POC flux decrease as recorded by neutrally buoyant sediment traps

  18. Variations in the elemental ratio of organic matter in the central Baltic Sea: Part I-Linking primary production to remineralization

    NASA Astrophysics Data System (ADS)

    Kreus, Markus; Schartau, Markus; Engel, Anja; Nausch, Monika; Voss, Maren

    2015-06-01

    For most marine ecosystems the growth of diazotrophic cyanobacteria and the associated amount of nitrogen fixation are regulated by the availability of phosphorus. The intensity of summer blooms of nitrogen (N2) fixing algae in the Baltic Sea is assumed to be determinable from a surplus of dissolved inorganic phosphorus (DIP) that remains after the spring bloom has ended. But this surplus DIP concentration is observed to continuously decrease at times when no appreciable nitrogen fixation is measured. This peculiarity is currently discussed and has afforded different model interpretations for the Baltic Sea. In our study we propose a dynamical model solution that explains these observations with variations of the elemental carbon-to-nitrogen-to-phosphorus (C:N:P) ratio during distinct periods of organic matter production and remineralization. The biogeochemical model resolves seasonal C, N and P fluxes with depth at the Baltic Sea monitoring site BY15, based on three assumptions: (1) DIP is utilized by algae though not needed for immediate growth, (2) the uptake of dissolved inorganic nitrogen (DIN) is hampered when the algae's phosphorus (P) quota is low, and (3) carbon assimilation continues at times of nutrient depletion. Model results describe observed temporal variations of DIN, DIP and chlorophyll-a concentrations along with partial pressure of carbon dioxide (pCO2). In contrast to other model studies, our solution does not require N2 fixation to occur shortly after the spring bloom to explain DIP drawdown and pCO2 levels. Model estimates of annual N2 fixation are 297 ± 24 mmol Nm-2a-1. Estimates of total production are 14200 ± 700 mmol Cm-2a-1, 1400 ± 70 mmol Nm-2a-1, and 114 ± 5 mmol Pm-2a-1 for the upper 50 m. The models C, N and P fluxes disclose preferential remineralization of P and of organic N that was introduced via N2 fixation. Our results are in support of the idea that P uptake by phytoplankton during the spring bloom contributes to the

  19. Carbon remineralization in a north Florida swamp forest: Effects of water level on the pathways and rates of soil organic matter decomposition

    NASA Astrophysics Data System (ADS)

    Happell, James D.; Chanton, Jeffrey P.

    1993-09-01

    Water level controlled gas emissions from North Florida swamp forests. Under flooded conditions, CO2 and CH4 were the principle carbon gases transported to the atmosphere by bubble ebullition and molecular diffusion. The respective emission rates were for CO2, 29.3 ± 16.4 (13% by means of ebullition, 87% by means of diffusion, error is ± 1 standard deviation throughout) and for CH4, 2.16 ± 2.24 (45% by means of ebullition, 55% by means of diffusion) mol m-2 yr-1. Methane emissions were significantly attenuated by CH4 oxidation which occurred primarily at the sediment-water interface. Forty-six ± 22 % (n=19) of the belowground CH4 diffusing to this interface was oxidized before it could escape to the atmosphere. Under dry conditions, CO2 was the principle carbon gas released and atmospheric CH4 was consumed by microbes in the soil. The respective rates were 101.2 ± 26.80 and -0.015 ± 0.005 mol mr-2 yr-1. A carbon budget for the degradation of soil organic matter was developed for a swamp forest site under flooded and dry conditions. Assuming that live root respiration accounted for 67% (value determined in a swamp forest and is at the upper range of literature values) of the total CO2 emissions (given above), we calculate that under flooded conditions carbon remineralization proceeded at a total rate of 11.9 mol C m-2 yr-1. Forty-nine percent of the remineralization was by means of nonmethanogenic processes which produce CO2; the balance was by means of methanogenic processes, which produce both CH4 and CO2. Under dry conditions, remineralization was dominated by aerobic processes at a rate of 33.7 mol C m-2 yr-1. Carbon inputs to the soil occurred by aboveground and belowground production. Aboveground litter production contributed 25.6 mol C m-2 yr-1. If belowground production contributed an equal amount, then over the course of this study organic carbon accumulated in the soils at rates of 39.3 and 17.5 mol C m-2 yr-1 under flooded and dry conditions

  20. Algal-bacteria Interactions and the Effects on Organic Matter Flux and Carbon Remineralization in the Ocean

    NASA Astrophysics Data System (ADS)

    Burns, W. G.; Marchetti, A.; White, B. L.; Prairie, J. C.; Ziervogel, K.

    2016-02-01

    Dissolved organic matter (DOM) produced during phytoplankton growth is processed and transformed by heterotrophic bacterial communities that produce extracellular enzymes in order to access and degrade organic matter substrates. Despite their important role for pelagic nutrient fluxes and energy cycling in the ocean, interactions between phytoplankton growth and activities of heterotrophic bacterial communities are rarely measured in concert. We conducted separate laboratory experiments with non-axenic diatom cultures of Thalassiosira pseudonana, Thalassiosira sp. and Chaetoceros sp.; the latter two diatoms were recently isolated from the Northeast Pacific Ocean as well as natural microbial assemblages sampled during a cruise into the Mid-Atlantic Bight, to measure hydrolytic enzyme activities during phytoplankton growth. Diatom monocultures and mixed microbial communities were incubated under turbulence using oscillating grids, and incubation times varied between 4 and 14 days. Subsamples were taken at different times during the incubation to determine bacterial and phytoplankton cell numbers, b-glucosidase and leucine-aminopeptidase activities, and concentrations of transparent exopolymeric particles (TEP) that form from microbial metabolites. The culture experiments revealed species-specific patterns in TEP formation and hydrolytic enzyme activities during the different phytoplankton growth phases. Heterotrophic responses within natural assemblages were more complex, reflecting hydrolytic activities of both bacterial communities associated with phytoplankton and free-living cells in the surrounding seawater.

  1. Burial, remineralization and utilization of organic matter at the sea floor under a strong western boundary current. Final report, May 1, 1992--April 30, 1995

    SciTech Connect

    Jahnke, R.A.

    1995-08-24

    The overall goals of this project were to quantify the rates of organic carbon export from the southern mid-Atlantic Bight and to quantify the rates at which carbon is exchanged between the inorganic and organic pools within the bottom sediments. This information is necessary to constrain the role of the oceans in the control of carbon dioxide released to the atmosphere in association with energy production. During this project, in situ benthic flux chamber incubations have been performed at six sites on the continental slope and rise adjacent to Cape Hatteras. Based on the analysis of the time-series samples recovered during each experiment, the sea floor exchange rates of the major biogenic elements, oxygen, carbon, nitrogen, phosphorus and silicon were calculated. From the estimated benthic flux rates and the ancillary pore water and sediment analyses, the deposition, remineralization and burial rates of organic carbon to the sea floor in this area was evaluated. This information has been incorporated into regional and global assessments of organic carbon fluxes to the deep sea.

  2. Temporal variation and stoichiometric ratios of organic matter remineralization in bottom waters of the northern Gulf of Mexico during late spring and summer

    NASA Astrophysics Data System (ADS)

    Xue, Jianhong; Cai, Wei-Jun; Hu, Xinping; Huang, Wei-Jen; Lohrenz, Steven E.; Gundersen, Kjell

    2015-12-01

    An improved extended optimum multiparameter (eOMP) analysis was applied to hydrographic (temperature and salinity), and water chemistry data, including dissolved oxygen (O2), nutrients (nitrate plus nitrite, phosphate, and silicate), dissolved inorganic carbon (DIC), and total alkalinity (TAlk) data collected during late spring and summer from 2006 to 2012 in bottom waters off the Louisiana coast, to explore the dynamics and stoichiometry of DIC production during the development and maintenance of summer hypoxia. Our analysis demonstrated that DIC in bottom water was relatively low from April to June, but increased significantly in July, peaked in August, and dropped slightly in September. Furthermore, DIC production resulted from both aerobic organic carbon (OC) respiration and denitrification, as well as substantial loss due to vertical mixing with surface water. The average summer gross OC respiration rate was estimated to be 0.19 g C m-2 d-1, with the highest values occurring in late summer when hypoxic conditions dominated. We also found that Corg/N/P/-O2 remineralization ratios for aerobic respiration were generally consistent with the classic Redfield ratio (106/16/1/138) except individual C/N and C/P ratios were slightly lower, indicating that marine OC was the major source of the DIC production in the bottom water. This study quantified the role of temporal bottom-water microbial respiration to seasonal DIC dynamics and provided a means for studying the stoichiometry of biogeochemical processes in coastal waters.

  3. Burial, remineralization and utilization of organic matter at the seafloor under a strong western boundary current. Annual progress report, 1 May 1993--30 April 1994

    SciTech Connect

    Jahnke, R.A.

    1993-12-30

    The overall objectives of this project are to quantify the rates of organic carbon export from the southern mid-Atlantic Bight and to quantify the rates at which carbon is exchanged between the inorganic and organic pools within the bottom sediments. The strategy for achieving these goals is to quantify the rates of benthic exchange and burial of bioactive elements including oxidants (such as oxygen, nitrate, sulfate), micronutrient, and carbon system parameters on the continental shelf, slope and rise regions within and adjacent to the south portion of the mid-Atlantic Bight. This information, in conjunction with burial rates provided by others in this program, will be used to determine the locations and rates of export and oxidative loss of organic matter from the shelf. During this past funding period, three expeditions were completed to the study region, successfully conducting 6 in situ benthic flux chamber experiments. The results provide an initial assessment of the magnitude and location of organic matter export from the southern Middle Atlantic Bight shelf and of the importance of this region as a supplier of organic carbon to the North Atlantic Ocean Basin.

  4. Remineralization of organic carbon in eastern Canadian continental margin sediments

    NASA Astrophysics Data System (ADS)

    Silverberg, Norman; Sundby, Bjørn; Mucci, Alfonso; Zhong, Shaojun; Arakaki, Takeshi; Hall, Per; Landén, Angela; Tengberg, Anders

    2000-04-01

    Undisturbed sediment samples were collected for chemical analyses at six sites during winter and summer cruises to the eastern Canadian continental margin. Micro-electrode oxygen profiles were obtained in freshly collected multicorer samples, and replicate cores were incubated at in situ temperature for 48 h to monitor changes in the concentrations of dissolved oxygen and nitrate. In addition, box cores were subsampled vertically for porewater chemistry, porosity, and particulate carbon. The data obtained are combined with estimates of sedimentation rate based on sediment trap measurements, 210Pb dating and historical data to evaluate the role of benthic processes in the carbon cycle on the eastern Canadian continental margin. With one exception, oxygen uptake rates determined from incubations and calculated from micro-profiles were very similar, indicating that exchange of oxygen across the sediment-water interface was dominated by molecular diffusion. On the basis of this observation, transport by diffusion is assumed for the calculation of the flux rates for other solutes from their respective porewater gradients. The fluxes of oxygen into the sediments were low, but generally comparable to other continental margins at comparable depths. They varied from 1.4 to 1.8 mmol/m 2/d in December 1993 and from 2.8 to 4.5 mmol/m 2/d in June 1994. Uptake of nitrate by the sediment occurred at all sites except for the continental slope off Nova Scotia. Both oxygen and nitrate uptake were higher in summer than in winter, indicative of a lingering response to the input of organic matter associated with the early spring bloom. At one of the sampling sites, Miscou Channel, the measured oxygen uptake rate far exceeded the flux calculated from the oxygen gradient. The difference suggests biologically enhanced exchange with the overlying waters at this site, consistent with the greater abundance of benthic organisms. The rate of organic carbon mineralization at the seafloor (1

  5. Snowball Earth prevention by dissolved organic carbon remineralization.

    PubMed

    Peltier, W Richard; Liu, Yonggang; Crowley, John W

    2007-12-06

    The 'snowball Earth' hypothesis posits the occurrence of a sequence of glaciations in the Earth's history sufficiently deep that photosynthetic activity was essentially arrested. Because the time interval during which these events are believed to have occurred immediately preceded the Cambrian explosion of life, the issue as to whether such snowball states actually developed has important implications for our understanding of evolutionary biology. Here we couple an explicit model of the Neoproterozoic carbon cycle to a model of the physical climate system. We show that the drawdown of atmospheric oxygen into the ocean, as surface temperatures decline, operates so as to increase the rate of remineralization of a massive pool of dissolved organic carbon. This leads directly to an increase of atmospheric carbon dioxide, enhanced greenhouse warming of the surface of the Earth, and the prevention of a snowball state.

  6. Remineralization of particulate organic carbon in an ocean oxygen minimum zone

    NASA Astrophysics Data System (ADS)

    Cavan, E. L.; Trimmer, M.; Shelley, F.; Sanders, R.

    2017-03-01

    Biological oceanic processes, principally the surface production, sinking and interior remineralization of organic particles, keep atmospheric CO2 lower than if the ocean was abiotic. The remineralization length scale (RLS, the vertical distance over which organic particle flux declines by 63%, affected by particle respiration, fragmentation and sinking rates) controls the size of this effect and is anomalously high in oxygen minimum zones (OMZ). Here we show in the Eastern Tropical North Pacific OMZ 70% of POC remineralization is due to microbial respiration, indicating that the high RLS is the result of lower particle fragmentation by zooplankton, likely due to the almost complete absence of zooplankton particle interactions in OMZ waters. Hence, the sensitivity of zooplankton to ocean oxygen concentrations can have direct implications for atmospheric carbon sequestration. Future expansion of OMZs is likely to increase biological ocean carbon storage and act as a negative feedback on climate change.

  7. Remineralization of particulate organic carbon in an ocean oxygen minimum zone

    PubMed Central

    Cavan, E. L.; Trimmer, M.; Shelley, F.; Sanders, R.

    2017-01-01

    Biological oceanic processes, principally the surface production, sinking and interior remineralization of organic particles, keep atmospheric CO2 lower than if the ocean was abiotic. The remineralization length scale (RLS, the vertical distance over which organic particle flux declines by 63%, affected by particle respiration, fragmentation and sinking rates) controls the size of this effect and is anomalously high in oxygen minimum zones (OMZ). Here we show in the Eastern Tropical North Pacific OMZ 70% of POC remineralization is due to microbial respiration, indicating that the high RLS is the result of lower particle fragmentation by zooplankton, likely due to the almost complete absence of zooplankton particle interactions in OMZ waters. Hence, the sensitivity of zooplankton to ocean oxygen concentrations can have direct implications for atmospheric carbon sequestration. Future expansion of OMZs is likely to increase biological ocean carbon storage and act as a negative feedback on climate change. PMID:28322218

  8. Sources and Distribution of Organic Matter in Sediments of the Louisiana Continental Shelf

    EPA Science Inventory

    Both riverine and marine sources of organic matter (OM) contribute to sediment organic pools, and either source can contribute significantly to sediment accumulation, burial, and remineralization rates on river dominated continental shelf systems. For the Louisiana continental sh...

  9. Sources and Distribution of Organic Matter in Sediments of the Louisiana Continental Shelf

    EPA Science Inventory

    Both riverine and marine sources of organic matter (OM) contribute to sediment organic pools, and either source can contribute significantly to sediment accumulation, burial, and remineralization rates on river dominated continental shelf systems. For the Louisiana continental sh...

  10. Preferential remineralization of dissolved organic phosphorus and non-Redfield DOM dynamics in the global ocean: Impacts on marine productivity, nitrogen fixation, and carbon export

    NASA Astrophysics Data System (ADS)

    Letscher, Robert T.; Moore, J. Keith

    2015-03-01

    Selective removal of nitrogen (N) and phosphorus (P) from the marine dissolved organic matter (DOM) pool has been reported in several regional studies. Because DOM is an important advective/mixing pathway of carbon (C) export from the ocean surface layer and its non-Redfieldian stoichiometry would affect estimates of marine export production per unit N and P, we investigated the stoichiometry of marine DOM and its remineralization globally using a compiled DOM data set. Marine DOM is enriched in C and N compared to Redfield stoichiometry, averaging 317:39:1 and 810:48:1 for C:N:P within the degradable and total bulk pools, respectively. Dissolved organic phosphorus (DOP) is found to be preferentially remineralized about twice as rapidly with respect to the enriched C:N stoichiometry of marine DOM. Biogeochemical simulations with the Biogeochemical Elemental Cycling model using Redfield and variable DOM stoichiometry corroborate the need for non-Redfield dynamics to match the observed DOM stoichiometry. From our model simulations, preferential DOP remineralization is found to increase the strength of the biological pump by ~9% versus the case of Redfield DOM cycling. Global net primary productivity increases ~10% including an increase in marine nitrogen fixation of ~26% when preferential DOP remineralization and direct utilization of DOP by phytoplankton are included. The largest increases in marine nitrogen fixation, net primary productivity, and carbon export are observed within the western subtropical gyres, suggesting the lateral transfer of P in the form of DOP from the productive eastern and poleward gyre margins may be important for sustaining these processes downstream in the subtropical gyres.

  11. Photodissolution of soil organic matter

    USGS Publications Warehouse

    Mayer, L.M.; Thornton, K.R.; Schick, L.L.; Jastrow, J.D.; Harden, J.W.

    2012-01-01

    Sunlight has been shown to enhance loss of organic matter from aquatic sediments and terrestrial plant litter, so we tested for similar reactions in mineral soil horizons. Losses of up to a third of particulate organic carbon occurred after continuous exposure to full-strength sunlight for dozens of hours, with similar amounts appearing as photodissolved organic carbon. Nitrogen dissolved similarly, appearing partly as ammonium. Modified experiments with interruption of irradiation to include extended dark incubation periods increased loss of total organic carbon, implying remineralization by some combination of light and microbes. These photodissolution reactions respond strongly to water content, with reaction extent under air-dry to fully wet conditions increasing by a factor of 3-4 fold. Light limitation was explored using lamp intensity and soil depth experiments. Reaction extent varied linearly with lamp intensity. Depth experiments indicate that attenuation of reaction occurs within the top tens to hundreds of micrometers of soil depth. Our data allow only order-of-magnitude extrapolations to field conditions, but suggest that this type of reaction could induce loss of 10-20% of soil organic carbon in the top 10. cm horizon over a century. It may therefore have contributed to historical losses of soil carbon via agriculture, and should be considered in soil management on similar time scales. ?? 2011 Elsevier B.V.

  12. Organic matter diagenesis in shallow water carbonate sediments

    NASA Astrophysics Data System (ADS)

    Ingalls, Anitra E.; Aller, Robert C.; Lee, Cindy; Wakeham, Stuart G.

    2004-11-01

    Muddy carbonate deposits near the Dry Tortugas, Florida, are characterized by high organic carbon remineralization rates. However, approximately half of the total sedimentary organic matter potentially supporting remineralization is occluded in CaCO 3 minerals (intracrystalline). While a portion of nonintracrystalline organic matter appears to cycle rapidly, intracrystalline organic matter has an approximately constant concentration with depth, suggesting that as long as its protective mineral matrix is intact, it is not readily remineralized. Organic matter in excess of intracrystalline organic matter that is preserved may have a variety of mineral associations (e.g., intercrystalline, adsorbed or detrital). In surface sediment, aspartic acid contributed ˜22 mole % and ˜50 mole % to nonintracrystalline and intracrystalline pools, respectively. In deeper sediment (1.6-1.7m), the composition of hydrolyzable amino acids in both pools was similar (aspartic acid ˜40 mole %). Like amino acids, intracrystalline and nonintracrystalline fatty acids have different compositions in surface sediments, but are indistinguishable at depth. These data suggest that preserved organic matter in the nonintracrystalline pool is stabilized by its interactions with CaCO 3. Neutral lipids are present in very low abundances in the intracrystalline pool and are extensively degraded in both the intracrystalline and nonintracrystalline pools, suggesting that mineral interactions do not protect these compounds from degradation. The presence of chlorophyll- a, but absence of phytol, in the intracrystalline lipid pool demonstrates that chloropigments are present only in the nonintracrystalline pool. Sedimentary chloropigments decrease with depth at similar rates in Dry Tortugas sediments as found in alumino-silicate sediments from the Long Island Sound, suggesting that chloropigment degradation is largely unaffected by mineral interactions. Overall, however, inclusion and protection of

  13. Organic nutrient enrichment in the oligotrophic ocean: Impacts on remineralization, carbon sequestration, and community structure

    NASA Astrophysics Data System (ADS)

    Mackey, K. R.; Paytan, A.; Post, A. F.

    2007-12-01

    In oligotrophic seas where inorganic nitrogen (N) and phosphorus (P) are below the limits of detection, organic forms of these nutrients may constitute greater than 90% of the total N and P in the euphotic zone. The combined enzymatic activity of phytoplankton and heterotrophic bacteria determines the rate of nutrient remineralization, thereby influencing phytoplankton growth rates and carbon sequestration in these regions. In this study we investigated the effects of fertilization with ammonium (NH4), nitrate (NO3), nitrite (NO2), and phosphate (PO4) as well as various forms of organic N (urea, glycine) and P (deoxyribonucleic acid, 2- aminoethyl phosphonic acid, phytic acid) on the growth and taxonomic composition of the phytoplankton community in the Gulf of Aqaba, Red Sea. The impacts of these changes on nutrient cycling and biological assimilation were also assessed. Organic N additions led to phytoplankton growth when given together with PO4, yielding 2-3 fold increases in chlorophyll a (Chl a) and cell density relative to initial levels. Moreover, our results show that addition of NH4 or NO3 led to accumulation of extra-cellular NO2, suggesting that incomplete assimilatory reduction of NO3 by phytoplankton as well as chemoautotrophic oxidation of NH4 by ammonium oxidizing microbes contributed to NO2 formation. These findings conflict with earlier studies in the Gulf that attributed NO2 formation solely to the phytoplankton community. Organic P additions also led to 2-3 fold increases in Chl a and cell density relative to initial levels when given together with NH4 and NO3. Compared to other P additions, DNA led to the rapid accumulation of extra-cellular PO4, indicating substantial nucleotidase activity in excess of the amount needed to meet phytoplankton growth requirements. These results show the importance and interconnectivity of phytoplankton and heterotrophic bacteria communities in contributing to nutrient cycling and carbon sequestration in

  14. Reactive-transport modeling of iron diagenesis and associated organic carbon remineralization in a Florida (USA) subterranean estuary

    USGS Publications Warehouse

    Roy, Moutusi; Martin, Jonathan B.; Smith, Christopher G.; Cable, Jaye E.

    2011-01-01

    Iron oxides are important terminal electron acceptors for organic carbon (OC) remineralization in subterranean estuaries, particularly where oxygen and nitrate concentrations are low. In Indian River Lagoon, Florida, USA, terrestrial Fe-oxides dissolve at the seaward edge of the seepage face and flow upward into overlying marine sediments where they precipitate as Fe-sulfides. The dissolved Fe concentrations vary by over three orders of magnitude, but Fe-oxide dissolution rates are similar across the 25-m wide seepage face, averaging around 0.21 mg/cm2/yr. The constant dissolution rate, but differing concentrations, indicate Fe dissolution is controlled by a combination of increasing lability of dissolved organic carbon (DOC) and slower porewater flow velocities with distance offshore. In contrast, the average rate constants of Fe-sulfide precipitation decrease from 21.9 × 10-8 s-1 to 0.64 × 10-8 s-1 from the shoreline to the seaward edge of the seepage face as more oxygenated surface water circulates through the sediment. The amount of OC remineralized by Fe-oxides varies little across the seepage face, averaging 5.34 × 10-2 mg/cm2/yr. These rates suggest about 3.4 kg of marine DOC was remineralized in a 1-m wide, shore-perpendicular strip of the seepage face as the terrestrial sediments were transgressed over the past 280 years. During this time, about 10 times more marine solid organic carbon (SOC) accumulated in marine sediments than were removed from the underlying terrestrial sediments. Indian River Lagoon thus appears to be a net sink for marine OC.

  15. Reactive-transport modeling of iron diagenesis and associated organic carbon remineralization in a Florida (USA) subterranean estuary

    NASA Astrophysics Data System (ADS)

    Roy, Moutusi; Martin, Jonathan B.; Smith, Christopher G.; Cable, Jaye E.

    2011-04-01

    Iron oxides are important terminal electron acceptors for organic carbon (OC) remineralization in subterranean estuaries, particularly where oxygen and nitrate concentrations are low. In Indian River Lagoon, Florida, USA, terrestrial Fe-oxides dissolve at the seaward edge of the seepage face and flow upward into overlying marine sediments where they precipitate as Fe-sulfides. The dissolved Fe concentrations vary by over three orders of magnitude, but Fe-oxide dissolution rates are similar across the 25-m wide seepage face, averaging around 0.21 mg/cm 2/yr. The constant dissolution rate, but differing concentrations, indicate Fe dissolution is controlled by a combination of increasing lability of dissolved organic carbon (DOC) and slower porewater flow velocities with distance offshore. In contrast, the average rate constants of Fe-sulfide precipitation decrease from 21.9 × 10 - 8 s - 1 to 0.64 × 10 - 8 s - 1 from the shoreline to the seaward edge of the seepage face as more oxygenated surface water circulates through the sediment. The amount of OC remineralized by Fe-oxides varies little across the seepage face, averaging 5.34 × 10 - 2 mg/cm 2/yr. These rates suggest about 3.4 kg of marine DOC was remineralized in a 1-m wide, shore-perpendicular strip of the seepage face as the terrestrial sediments were transgressed over the past 280 years. During this time, about 10 times more marine solid organic carbon (SOC) accumulated in marine sediments than were removed from the underlying terrestrial sediments. Indian River Lagoon thus appears to be a net sink for marine OC.

  16. Can Caries-Affected Dentin be Completely Remineralized by Guided Tissue Remineralization?

    PubMed Central

    Dai, Lin; Liu, Yan; Salameh, Ziad; Khan, Sara; Mao, Jing; Pashley, David H.; Tay, Franklin R.

    2011-01-01

    Introduction To date, there is no evidence that conventional remineralization techniques using calcium and phosphate ion- containing media will completely remineralize carious lesions in regions where remnant apatite seed crystallites are absent. Conversely, guided tissue remineralization using biomimetic analogs of dentin matrix proteins is successful in remineralizing thin layers of completely demineralized dentin. The hypothesis Conventional remineralization strategy depends on epitaxial growth over existing apatite crystallites. If there are no or few crystallites, there will be no remineralization. Guided tissue remineralization uses biomimetic analogs of dentin matrix proteins to introduce sequestered amorphous calcium phosphate nanoprecursors into the internal water compartments of collagen fibrils. Attachment of templating analogs of matrix phosphoproteins to the collagen fibrils further guided the nucleation and growth of apatite crystallites within the fibril. Such a strategy is independent of apatite seed crystallites. Our hypothesis is that 250–300 microns thick artificial carious lesions can be completely remineralized in vitro by guide tissue remineralization but not by conventional remineralization techniques. Evaluation of the hypothesis Validation of the hypothesis will address the critical barrier to progress in remineralization of caries- affected dentin and shift existing paradigms by providing a novel method of remineralization based on a nanotechnology-based bottom-up approach. This will also generate important information to support the translation of the proof-of-concept biomimetic strategy into a clinically-relevant delivery system for remineralizing caries-affected dentin created by micro-organisms in the oral cavity. PMID:21909477

  17. Is old organic matter simple organic matter?

    NASA Astrophysics Data System (ADS)

    Nunan, Naoise; Lerch, Thomas; Pouteau, Valérie; Mora, Philippe; Changey, Fréderique; Kätterer, Thomas; Herrmann, Anke

    2016-04-01

    Bare fallow soils that have been deprived of fresh carbon inputs for prolonged periods contain mostly old, stable organic carbon. In order to shed light on the nature of this carbon, the functional diversity profiles (MicroResp™, Biolog™ and enzyme activity spectra) of the microbial communities of long-term barefallow soils were analysed and compared with those of the microbial communities from their cultivated counterparts. The study was based on the idea that microbial communities adapt to their environment and that therefore the catabolic and enzymatic profiles would reflect the type of substrates available to the microbial communities. The catabolic profiles suggested that the microbial communities in the long-term bare-fallow soil were exposed to a less diverse range of substrates and that these substrates tended to be of simpler molecular forms. Both the catabolic and enzyme activity profiles suggested that the microbial communities from the long-term bare-fallow soils were less adapted to using polymers. These results do not fit with the traditional view of old, stable carbon being composed of complex, recalcitrant polymers. An energetics analysis of the substrate use of the microbial communities for the different soils suggested that the microbial communities from the long-term bare-fallow soils were better adapted to using readily oxidizable,although energetically less rewarding, substrates. Microbial communities appear to adapt to the deprivation of fresh organic matter by using substrates that require little investment.

  18. Arctic River organic matter transport

    NASA Astrophysics Data System (ADS)

    Raymond, Peter; Gustafsson, Orjan; Vonk, Jorien; Spencer, Robert; McClelland, Jim

    2016-04-01

    Arctic Rivers have unique hydrology and biogeochemistry. They also have a large impact on the Arctic Ocean due to the large amount of riverine inflow and small ocean volume. With respect to organic matter, their influence is magnified by the large stores of soil carbon and distinct soil hydrology. Here we present a recap of what is known of Arctic River organic matter transport. We will present a summary of what is known of the ages and sources of Arctic River dissolved and particulate organic matter. We will also discuss the current status of what is known about changes in riverine organic matter export due to global change.

  19. Sensitivity of air-sea CO2-exchange and calcite saturation depth to the remineralization depth of marine particulate organic and inorganic carbon

    NASA Astrophysics Data System (ADS)

    Schneider, B.; Bopp, L.; Gehlen, M.

    2009-04-01

    The present study addresses the question of what would happen to air-sea CO2 exchange and the depth of the calcite saturation horizon (CSH) if the remineralization depth of particulate organic and inorganic carbon (POC, PIC) was changing. Therefore, a biogeochemical ocean circulation model (PISCES) was run with four different parameterizations for vertical particle fluxes, starting from the same initial conditions. Particle fluxes undergo strong changes induced by a combination of the respective mechanistic formulation of the vertical particle flux and the resulting ecosystem response. Reorganizations in dissolved properties are caused by (i) changed fluxes of POC and PIC; (ii) advection; (iii) air-sea CO2 exchange (DIC). The results show that the more (less) efficient the vertical transport of POC (PIC) from the surface toward depth, the lower the surface ocean pCO2, the higher the air-sea CO2 flux, and the stronger the increase in the oceanic inventory of DIC, and vice versa. Consequently, in one experiment the ocean is turning into a CO2 source to the atmosphere, in two cases it becomes a weak sink and in one simulation it turns into a strong sink. Surprisingly, results for changes in the CSH are more similar among the simulations at larger scale with a general deepening in the North Pacific and a shoaling elsewhere. In most areas the readjustment of the CSH is controlled by DIC and alkalinity acting both towards the simulated CSH shifts, however, in some cases DIC (alkalinity) is overcompensating for an effect that would occur due to changes in alkalinity (DIC), alone. In detail, the differences found between the experiments can be well explained by the respective particle flux responses. The current study shows that reorganizations in the vertical flux of particulate matter in the ocean may have immediate and longer-term effects on the marine carbon cycle which could potentially feedback on the climate system.

  20. Hypoxia causes preservation of labile organic matter and changes seafloor microbial community composition (Black Sea).

    PubMed

    Jessen, Gerdhard L; Lichtschlag, Anna; Ramette, Alban; Pantoja, Silvio; Rossel, Pamela E; Schubert, Carsten J; Struck, Ulrich; Boetius, Antje

    2017-02-01

    Bottom-water oxygen supply is a key factor governing the biogeochemistry and community composition of marine sediments. Whether it also determines carbon burial rates remains controversial. We investigated the effect of varying oxygen concentrations (170 to 0 μM O2) on microbial remineralization of organic matter in seafloor sediments and on community diversity of the northwestern Crimean shelf break. This study shows that 50% more organic matter is preserved in surface sediments exposed to hypoxia compared to oxic bottom waters. Hypoxic conditions inhibit bioturbation and decreased remineralization rates even within short periods of a few days. These conditions led to the accumulation of threefold more phytodetritus pigments within 40 years compared to the oxic zone. Bacterial community structure also differed between oxic, hypoxic, and anoxic zones. Functional groups relevant in the degradation of particulate organic matter, such as Flavobacteriia, Gammaproteobacteria, and Deltaproteobacteria, changed with decreasing oxygenation, and the microbial community of the hypoxic zone took longer to degrade similar amounts of deposited reactive matter. We conclude that hypoxic bottom-water conditions-even on short time scales-substantially increase the preservation potential of organic matter because of the negative effects on benthic fauna and particle mixing and by favoring anaerobic processes, including sulfurization of matter.

  1. Hypoxia causes preservation of labile organic matter and changes seafloor microbial community composition (Black Sea)

    PubMed Central

    Jessen, Gerdhard L.; Lichtschlag, Anna; Ramette, Alban; Pantoja, Silvio; Rossel, Pamela E.; Schubert, Carsten J.; Struck, Ulrich; Boetius, Antje

    2017-01-01

    Bottom-water oxygen supply is a key factor governing the biogeochemistry and community composition of marine sediments. Whether it also determines carbon burial rates remains controversial. We investigated the effect of varying oxygen concentrations (170 to 0 μM O2) on microbial remineralization of organic matter in seafloor sediments and on community diversity of the northwestern Crimean shelf break. This study shows that 50% more organic matter is preserved in surface sediments exposed to hypoxia compared to oxic bottom waters. Hypoxic conditions inhibit bioturbation and decreased remineralization rates even within short periods of a few days. These conditions led to the accumulation of threefold more phytodetritus pigments within 40 years compared to the oxic zone. Bacterial community structure also differed between oxic, hypoxic, and anoxic zones. Functional groups relevant in the degradation of particulate organic matter, such as Flavobacteriia, Gammaproteobacteria, and Deltaproteobacteria, changed with decreasing oxygenation, and the microbial community of the hypoxic zone took longer to degrade similar amounts of deposited reactive matter. We conclude that hypoxic bottom-water conditions—even on short time scales—substantially increase the preservation potential of organic matter because of the negative effects on benthic fauna and particle mixing and by favoring anaerobic processes, including sulfurization of matter. PMID:28246637

  2. Variations of iron flux and organic carbon remineralization in a subterranean estuary caused by inter-annual variations in recharge

    NASA Astrophysics Data System (ADS)

    Roy, Moutusi; Martin, Jonathan B.; Cable, Jaye E.; Smith, Christopher G.

    2013-02-01

    We determine the inter-annual variations in diagenetic reaction rates of sedimentary iron (Fe) in an east Florida subterranean estuary and evaluate the connection between metal fluxes and recharge to the coastal aquifer. Over the three years study period (from 2004 to 2007), the amount of Fe-oxides reduced at the study site decreased from 192 to 153 g/yr and associated organic carbon (OC) remineralization decreased from 48 to 38 g/yr. These reductions occurred although the Fe-oxide reduction rates remained constant around 1 mg/cm2/yr. These results suggest that changes in flow rates of submarine groundwater discharge (SGD) related to changes in precipitation may be important to fluxes of the diagenetic reaction products. Rainfall at a weather station approximately 5 km from the field area decreased from 12.6 to 8.4 cm/month from 2004 to 2007. Monthly potential evapotranspiration (PET) calculated from Thornthwaite's method indicated potential evapotranspiration cycled from about 3 cm/month in the winter to about 15 cm/month in the summer so that net annual recharge to the aquifer decreased from 40 cm in 2004 to -10 cm in 2007. Simultaneously with the decrease in recharge of groundwater, freshwater SGD decreased by around 20% and caused the originally 25 m wide freshwater seepage face to decrease in width by about 5 m. The smaller seepage face reduced the area under which Fe-oxides were undergoing reductive dissolution. Consequently, the observed decrease in Fe flux is controlled by hydrology of the subterranean estuary. These results point out the need to better understand linkages between temporal variations in diagenetic reactions and changes in flow within subterranean estuaries in order to accurately constrain their contribution to oceanic fluxes of solutes from subterranean estuaries.

  3. Variations of iron flux and organic carbon remineralization in a subterranean estuary caused by interannual variations in recharge

    USGS Publications Warehouse

    Roy, Moutusi; Martin, Jonathan B.; Cable, Jaye E.; Smith, Christopher G.

    2013-01-01

    We determine the inter-annual variations in diagenetic reaction rates of sedimentary iron (Fe ) in an east Florida subterranean estuary and evaluate the connection between metal fluxes and recharge to the coastal aquifer. Over the three-year study period (from 2004 to 2007), the amount of Fe-oxides reduced at the study site decreased from 192 g/yr to 153 g/yr and associated organic carbon (OC) remineralization decreased from 48 g/yr to 38 g/yr. These reductions occurred although the Fe-oxide reduction rates remained constant around 1 mg/cm2/yr. These results suggest that changes in flow rates of submarine groundwater discharge (SGD) related to changes in precipitation may be important to fluxes of the diagenetic reaction products. Rainfall at a weather station approximately 5 km from the field area decreased from 12.6 cm/month to 8.4 cm/month from 2004 to 2007. Monthly potential evapotranspiration (PET) calculated from Thornthwaite’s method indicated potential evapotranspiration cycled from about 3 cm/month in the winter to about 15 cm/month in the summer so that net annual recharge to the aquifer decreased from 40 cm in 2004 to -10 cm in 2007. Simultaneously, with the decrease in recharge of groundwater, freshwater SGD decreased by around 20% and caused the originally 25 m wide freshwater seepage face to decrease in width by about 5 m. The smaller seepage face reduced the area under which Fe-oxides were undergoing reductive dissolution. Consequently, the observed decrease in Fe flux is controlled by hydrology of the subterranean estuary. These results point out the need to better understand linkages between temporal variations in diagenetic reactions and changes in flow within subterranean estuaries in order to accurately constrain their contribution to oceanic fluxes of solutes from subterranean estuaries.

  4. Estimation of Particle Flux and Remineralization Rate from Radioactive Disequilibrium

    SciTech Connect

    Michael P. Bacon; Roger Francois

    2004-05-24

    Reactive radionuclides, such as the thorium isotopes, show measurable deficiencies in the oceanic water column because of their removal by chemical scavenging due to the particle flux. Measurement of the deficiency, coupled with measurement of the radionuclide concentration in particles, allows a determination of the effective particle sinking velocity. Results to date suggest that the effective particle sinking velocity is remarkably invariant with depth. This leads to the tentative suggestion that POC concentration profiles may, to a good approximation, be used directly to determine length scales for the remineralization of sinking organic matter. Further measurements are in progress to test this idea and to evaluate its limitations. Knowledge of the remineralization length scale is essential to an evaluation of the efficiency of the biological pump as a means for deep sequestering of carbon in the ocean.

  5. Estrone degradation: does organic matter (quality), matter?

    PubMed

    Tan, David T; Temme, Hanna R; Arnold, William A; Novak, Paige J

    2015-01-06

    Understanding the parameters that drive E1 degradation is necessary to improve existing wastewater treatment systems and evaluate potential treatment options. Organic matter quality could be an important parameter. Microbial communities grown from activated sludge seeds using different dissolved organic matter sources were tested for E1 degradation rates. Synthetic wastewater was aged, filter-sterilized, and used as a carbon and energy source to determine if recalcitrant organic carbon enhances E1 degradation. Higher E1 degradation was observed by biomass grown on 8 d old synthetic wastewater compared to biomass grown on fresh synthetic wastewater (P = 0.033) despite much lower concentrations of bacteria. Minimal or no E1 degradation was observed in biomass grown on 2 d old synthetic wastewater. Organic carbon analyses suggest that products of cell lysis or microbial products released under starvation stress stimulate E1 degradation. Additional water sources were also tested: lake water, river water, and effluents from a municipal wastewater treatement plant and a treatment wetland. E1 degradation was only observed in biomass grown in treatment effluent. Nitrogen, dissolved organic carbon, and trace element concentrations were not causative factors for E1 degradation. In both experiments, spectrophotometric analyses reveal degradation of E1 is associated with microbially derived organic carbon but not general recalcitrance.

  6. Pacific carbon cycling constrained by organic matter size, age and composition relationships

    NASA Astrophysics Data System (ADS)

    Walker, Brett D.; Beaupré, Steven R.; Guilderson, Thomas P.; McCarthy, Matthew D.; Druffel, Ellen R. M.

    2016-12-01

    Marine organic matter is one of Earth’s largest actively cycling reservoirs of organic carbon and nitrogen. The processes controlling organic matter production and removal are important for carbon and nitrogen biogeochemical cycles, which regulate climate. However, the many possible cycling mechanisms have hindered our ability to quantify marine organic matter transformation, degradation and turnover rates. Here we analyse existing and new measurements of the carbon:nitrogen ratio and radiocarbon age of organic matter spanning sizes from large particulate organic matter to small dissolved organic molecules. We find that organic matter size is negatively correlated with radiocarbon age and carbon:nitrogen ratios in coastal, surface and deep waters of the Pacific Ocean. Our measurements suggest that organic matter is increasingly chemically degraded as it decreases in size, and that small particles and molecules persist in the ocean longer than their larger counterparts. Based on these correlations, we estimate the production rates of small, biologically recalcitrant dissolved organic matter molecules at 0.11-0.14 Gt of carbon and about 0.005 Gt of nitrogen per year in the deep ocean. Our results suggest that the preferential remineralization of large over small particles and molecules is a key process governing organic matter cycling and deep ocean carbon storage.

  7. Organic matter in meteorites.

    PubMed

    Llorca, Jordi

    2004-12-01

    Some primitive meteorites are carbon-rich objects containing a variety of organic molecules that constitute a valuable record of organic chemical evolution in the universe prior to the appearance of microorganisms. Families of compounds include hydrocarbons, alcohols, aldehydes, ketones, carboxylic acids, amino acids, amines, amides, heterocycles, phosphonic acids, sulfonic acids, sugar-related compounds and poorly defined high-molecular weight macromolecules. A variety of environments are required in order to explain this organic inventory, including interstellar processes, gas-grain reactions operating in the solar nebula, and hydrothermal alteration of parent bodies. Most likely, substantial amounts of such organic materials were delivered to the Earth via a late accretion, thereby providing organic compounds important for the emergence of life itself, or that served as a feedstock for further chemical evolution. This review discusses the organic content of primitive meteorites and their relevance to the build up of biomolecules.

  8. Biomimetic remineralization of dentin

    PubMed Central

    Niu, Li-na; Zhang, Wei; Pashley, David H.; Breschi, Lorenzo; Mao, Jing; Chen, Ji-hua; Tay, Franklin R.

    2013-01-01

    Objectives Remineralization of demineralized dentin is important for improving dentin bonding stability and controlling primary and secondary caries. Nevertheless, conventional dentin remineralization strategy is not suitable for remineralizing completely-demineralized dentin within hybrid layers created by etch-and-rinse and moderately aggressive self-etch adhesive systems, or the superficial part of a caries-affected dentin lesion left behind after minimally invasive caries removal. Biomimetic remineralization represents a different approach to this problem by attempting to backfill the demineralized dentin collagen with liquid-like amorphous calcium phosphate nanoprecursor particles that are stabilized by biomimetic analogs of noncollagenous proteins. Methods This paper reviewed the changing concepts in calcium phosphate mineralization of fibrillar collagen, including the recently discovered, non-classical particle-based crystallization concept, formation of polymer-induced liquid- precursors (PILP), experimental collagen models for mineralization, and the need for using phosphate-containing biomimetic analogs for biomimetic mineralization of collagen. Published work on the remineralization of resin-dentin bonds and artificial caries-like lesions by various research groups was then reviewed. Finally, the problems and progress associated with the translation of a scientifically-sound concept into a clinically-applicable approach are discussed. Results and Significance The particle-based biomimetic remineralization strategy based on the PILP process demonstrates great potential in remineralizing faulty hybrid layers or caries-like dentin. Based on this concept, research in the development of more clinically feasible dentin remineralization strategy, such as incorporating poly(anionic) acid-stabilized amorphous calcium phosphate nanoprecursor-containing mesoporous silica nanofillers in dentin adhesives, may provide a promising strategy for increasing of the

  9. Early season mesopelagic carbon remineralization and transfer efficiency in the naturally iron-fertilized Kerguelen area

    NASA Astrophysics Data System (ADS)

    Jacquet, S. H. M.; Dehairs, F.; Cavagna, A. J.; Planchon, F.; Monin, L.; André, L.; Closset, I.; Cardinal, D.

    2014-06-01

    We report on the zonal variability of mesopelagic particulate organic carbon) remineralization and deep carbon transfer potential during the Kerguelen Ocean and Plateau compared Study 2 expedition (KEOPS 2; October-November 2011) in an area of the Polar Front supporting recurrent massive blooms from natural Fe fertilization. Mesopelagic carbon remineralization was assessed using the excess, non-lithogenic particulate barium (Baxs) inventories in mesopelagic waters and compared with surface primary and export productions. Results for this early season study are compared with results obtained earlier (2005; KEOPS 1) for the same area during summer. For the Kerguelen plateau (A3 site) we observe a similar functioning of the mesopelagic ecosystem during both seasons (spring and summer), with less that 30% of carbon exported from the upper 150 m being remineralized in the mesopelagic column (150-400 m). For deeper stations (> 2000 m) located on the margin, inside a Polar Front meander, as well as in the vicinity of the Polar Front, east of Kerguelen, remineralization in the upper 400 m in general represents > 30% of carbon export, but when considering the upper 800 m, in some cases, the entire flux of exported carbon is remineralized. It appears that above the plateau (A3 site) mesopelagic remineralization is not a major barrier to the transfer of organic matter to the sea-floor (close to 500 m). There the efficiency of carbon sequestration into the bottom waters (> 400 m) reached up to 87% of the carbon exported from the upper 150 m. In contrast, at the deeper locations mesopelagic remineralization clearly limits the sequestration of carbon to depths > 400 m. For sites at the margin of the plateau (station E-4W) and the Polar front (station F-L), mesopelagic remineralization even exceeds upper 150 m export, resulting in a null sequestration efficiency to depths > 800 m. In the Polar Front meander, where successive stations form a time series, the capacity of the

  10. Effect of crab bioturbation on organic matter processing in South West Atlantic intertidal sediments

    NASA Astrophysics Data System (ADS)

    Fanjul, Eugenia; Escapa, Mauricio; Montemayor, Diana; Addino, Mariana; Alvarez, María Fernanda; Grela, María A.; Iribarne, Oscar

    2015-01-01

    Organic matter (OM) remineralization plays a key role in controlling the biogeochemistry of marine sediments. Through their burrowing activities, bioturbating macrofauna not only induces physical, chemical and biological modifications, which can affect microbial communities responsible for organic matter remineralization, but it could also directly affect the distribution and bioavailability of sedimentary organic matter. Through in situ experiments manipulating crab and burrow density in intertidal soft-bottoms, we assessed if crab-bioturbation affects benthic metabolism, and the amount, distribution, and bioavailability of sedimentary OM. Crab-bioturbation enhanced overall benthic metabolism and benthic flux of dissolved OM toward the water column at both mudflat and saltmarsh zones. Moreover, our results revealed that bioturbation also changes the quality, bioavailability and distribution of sedimentary OM in mudflats and saltmarshes. Overall, bioturbation enhanced the proportion of labile organic carbon of bioturbated sediments and homogenized the sediment column in terms of their proportion of labile organic carbon. However, crabs also generated biogenic structures (e.g., mounds) that could promote spatial heterogeneity of high nutritional-value OM. Bioturbation-induced changes on benthic metabolism and on OM availability would result in a reduction of the storage capacity of carbon in our intertidal systems. Previous works indicated that crab-burrows trap detritus and OM-rich sediments. Our results suggest that detritus are efficiently remineralized at bioturbated sediment, and finally they are quickly exported to the water column as CO2 and DOC. Thus, crabs are modifying the OM processing at intertidal soft bottoms, and the ways in which carbon is exported to coastal waters.

  11. ENHANCED ORGANIC MATTER REMINERALIZATION AND NUTRIENT TURNOVER BY POPULATIONS OF BURROWING SHRIMP IN YAQUINA BAY, OR

    EPA Science Inventory

    Burrowing, or thalassinid, shrimp structure large areas of intertidal habitat of Pacific Northwest estuaries. This field study utilized a combination of anoxic incubations, porewater dialysis peepers, and benthic chambers to quantify the role of burrowing shrimp species on OM dec...

  12. ENHANCED ORGANIC MATTER REMINERALIZATION AND NUTRIENT TURNOVER BY BURROWING SHRIMP POPULATIONS IN YAQUINA BAY, OR

    EPA Science Inventory

    Burrowing thalassinid shrimp are major ecological components of Pacific Northwest (PNW) estuaries and where they structure large areas of intertidal and shallow subtidal habitat. These crustaceans occur in dense beds (>250 m-2) and dig extensive burrow systems (>1 m) controlling ...

  13. Early spring mesopelagic carbon remineralization and transfer efficiency in the naturally iron-fertilized Kerguelen area

    NASA Astrophysics Data System (ADS)

    Jacquet, S. H. M.; Dehairs, F.; Lefèvre, D.; Cavagna, A. J.; Planchon, F.; Christaki, U.; Monin, L.; André, L.; Closset, I.; Cardinal, D.

    2015-03-01

    transfer expanding at mesopelagic layers during the cruise. Regarding the deep carbon transfer efficiency, it appeared that above the plateau (A3 site) the mesopelagic remineralization was not a major barrier to the transfer of organic matter to the seafloor (close to 500 m). There, the efficiency of carbon transfer to the bottom waters (>400 m) as assessed by PP, EP and MR fluxes comparisons reached up to 87% of the carbon exported from the upper 150 m. In contrast, at the deeper locations, mesopelagic remineralization clearly limited the transfer of carbon to depths of >400 m. For sites at the margin of the plateau (station E-4W) and the polar front (station F-L), mesopelagic remineralization even exceeded upper 150 m export, resulting in a zero transfer efficiency to depths >800 m. In the polar front meander (time series), the capacity of the meander to transfer carbon to depth >800 m was highly variable (0 to 73%). The highest carbon transfer efficiencies in the meander are furthermore coupled to intense and complete deep (>800 m) remineralization, resulting again in a near-zero, deep (>2000 m) carbon sequestration efficiency there.

  14. Extraterrestrial organic matter: a review

    NASA Technical Reports Server (NTRS)

    Irvine, W. M.

    1998-01-01

    We review the nature of the widespread organic material present in the Milky Way Galaxy and in the Solar System. Attention is given to the links between these environments and between primitive Solar System objects and the early Earth, indicating the preservation of organic material as an interstellar cloud collapsed to form the Solar System and as the Earth accreted such material from asteroids, comets and interplanetary dust particles. In the interstellar medium of the Milky Way Galaxy more than 100 molecular species, the bulk of them organic, have been securely identified, primarily through spectroscopy at the highest radio frequencies. There is considerable evidence for significantly heavier organic molecules, particularly polycyclic aromatics, although precise identification of individual species has not yet been obtained. The so-called diffuse interstellar bands are probably important in this context. The low temperature kinetics in interstellar clouds leads to very large isotopic fractionation, particularly for hydrogen, and this signature is present in organic components preserved in carbonaceous chondritic meteorites. Outer belt asteroids are the probable parent bodies of the carbonaceous chondrites, which may contain as much as 5% organic material, including a rich variety of amino acids, purines, pyrimidines, and other species of potential prebiotic interest. Richer in volatiles and hence less thermally processed are the comets, whose organic matter is abundant and poorly characterized. Cometary volatiles, observed after sublimation into the coma, include many species also present in the interstellar medium. There is evidence that most of the Earth's volatiles may have been supplied by a 'late' bombardment of comets and carbonaceous meteorites, scattered into the inner Solar System following the formation of the giant planets. How much in the way of intact organic molecules of potential prebiotic interest survived delivery to the Earth has become an

  15. Extraterrestrial organic matter: a review

    NASA Technical Reports Server (NTRS)

    Irvine, W. M.

    1998-01-01

    We review the nature of the widespread organic material present in the Milky Way Galaxy and in the Solar System. Attention is given to the links between these environments and between primitive Solar System objects and the early Earth, indicating the preservation of organic material as an interstellar cloud collapsed to form the Solar System and as the Earth accreted such material from asteroids, comets and interplanetary dust particles. In the interstellar medium of the Milky Way Galaxy more than 100 molecular species, the bulk of them organic, have been securely identified, primarily through spectroscopy at the highest radio frequencies. There is considerable evidence for significantly heavier organic molecules, particularly polycyclic aromatics, although precise identification of individual species has not yet been obtained. The so-called diffuse interstellar bands are probably important in this context. The low temperature kinetics in interstellar clouds leads to very large isotopic fractionation, particularly for hydrogen, and this signature is present in organic components preserved in carbonaceous chondritic meteorites. Outer belt asteroids are the probable parent bodies of the carbonaceous chondrites, which may contain as much as 5% organic material, including a rich variety of amino acids, purines, pyrimidines, and other species of potential prebiotic interest. Richer in volatiles and hence less thermally processed are the comets, whose organic matter is abundant and poorly characterized. Cometary volatiles, observed after sublimation into the coma, include many species also present in the interstellar medium. There is evidence that most of the Earth's volatiles may have been supplied by a 'late' bombardment of comets and carbonaceous meteorites, scattered into the inner Solar System following the formation of the giant planets. How much in the way of intact organic molecules of potential prebiotic interest survived delivery to the Earth has become an

  16. The Export and Fate of Organic Matter in the Ocean: New Constraints from Combining Satellite and Oceanographic Tracer Observations

    NASA Astrophysics Data System (ADS)

    DeVries, T. J.; Weber, T. S.

    2016-12-01

    The ocean's biological pump transfers carbon from the sunlit surface into the ocean's deeper layers, where it is shielded from the atmosphere for months to millennia, reducing the atmospheric CO2 concentration. Despite it's climatic importance, there are large uncertainties in our understanding of the magnitude and mechanisms of the biological pump. Estimates of the strength of the biological pump, as measured by the amount of organic matter exported from the euphotic zone, range from about 4-12 Pg C/yr. The fate of exported organic matter, in terms of how efficiently it is transferred into the deep ocean before being remineralized, is even less well known. There is currently no consensus spatial patterns of transfer efficiency, and the processes that drive variability in organic matter remineralization depth are similarly uncertain. Here we present a new model of the biological pump that assimilates both satellite and oceanographic tracer observations to constrain rates and patterns of organic matter production, export and remineralization in the ocean. The model predicts about 9 PgC/yr of particulate carbon export, with higher particle export ratios in subtropical gyres than predicted by previous empirical models. Particle transfer efficiencies through the mesopelagic layer are highest in high-latitudes, and lowest in subtropical gyres, in agreement with results from arrays of neutrally buoyant sediments traps. Temperature and oxygen concentration are the dominant controls on particle transfer efficiency in the mesopelagic layer, while particle transfer efficiencies in the deep ocean are primarily controlled by spatial variations in particle size and/or ballast mineral content.

  17. Methylated Mercury in the Eastern Beaufort Sea of the Arctic Ocean: The Role of Local and Recent Organic Remineralization

    NASA Astrophysics Data System (ADS)

    Armstrong, D.; Wang, F.

    2012-12-01

    Mercury (Hg) is a major contaminant in the Arctic marine ecosystem. While extensive studies have been conducted on Hg in the Arctic's atmosphere and biota, far less is known about the distribution and dynamics of Hg species in the Arctic Ocean. Here we present vertical profiles for total Hg (HgT) and total methylated Hg (MeHgT; primarily monomethylmercury MMHg, but also including dimethylmercury DMHg) from the eastern Beaufort Sea of the Arctic Ocean at locations with differing sea ice conditions. The concentration of HgT ranged from 0.40 to 2.9 pM, with a surface enrichment that can be attributed to a combination of sea ice-modified atmospheric deposition and riverine input. The concentration of MeHgT ranged from <0.04 to 0.59 pM, with a sub-surface peak occurring at the same depth as a nutrient maximum and dissolved oxygen minimum which is consistent with the recent findings in the Pacific Ocean, Southern Ocean, and Mediterranean Sea. However, unlike the interior ocean regions, the nutrient maximum in the eastern Beaufort Sea is predominantly an advective feature produced over the Chukchi Shelf. Based on the short lifetime of MMHg in seawater, we propose that the MeHgT profile in the eastern Beaufort Sea reflects the local, short-term regeneration of labile organic matter (OM), and not the larger signal of organic regeneration advected from the Chukchi Sea in the halocline. The finding that MeHgT is produced locally, reflecting recent strength of OM cycling, not only explains wide variance in MeHgT in seawater and biota over time and space, but also implies that MeHgT could be used as an indicator of the recent export flux of labile OM.

  18. Assessing the sensitivity of modeled air-sea CO2 exchange to the remineralization depth of particulate organic and inorganic carbon

    NASA Astrophysics Data System (ADS)

    Schneider, Birgit; Bopp, Laurent; Gehlen, Marion

    2008-09-01

    To assess the sensitivity of surface ocean pCO2 and air-sea CO2 fluxes to changes in the remineralization depth of particulate organic and inorganic carbon (POC, PIC), a biogeochemical ocean circulation model (PISCES) was run with different parameterizations for vertical particle fluxes. On the basis of fluxes of POC and PIC, productivity, export, and the distributions of nitrogen (NO3), dissolved inorganic carbon (DIC), and alkalinity, a number of indices defined to estimate the efficiency of carbon transport away from the atmosphere are applied. With differing success for the respective indices the results show that the more efficient the vertical transport of organic carbon toward depth, the lower the surface ocean pCO2, the higher the air-sea CO2 flux, and the stronger the increase in the oceanic inventory of DIC. Along with POC flux it is important to consider variations in PIC flux, as the net effect of particle flux reorganizations on surface ocean pCO2 is a combination of changes in DIC and alkalinity. The results demonstrate that changes in the mechanistic formulation of vertical particle fluxes have direct and indirect effects on surface ocean pCO2 and may thus interact with the atmospheric CO2 reservoir.

  19. N/P re-mineralization ratios across forests worldwide

    NASA Astrophysics Data System (ADS)

    Marklein, A. R.; Houlton, B. Z.

    2012-12-01

    Decomposition of leaf litter is the primary mechanism by which nutrients are recycled in forests. Forests are a sink for atmospheric CO2, but nitrogen (N) and phosphorus (P) could limit or eliminate this ecosystem service in the future. Nutrient cycling during mineralization supplies the vast majority of nutrients to enable forest growth. Therefore, elucidating patterns by which organic N and P are mineralized by decomposing organisms or immobilized in microbial biomass is crucial to establishing controls on plant nutrient availability. Here, we compare re-mineralization N/P ratios to the stoichiometry of the initial material. We performed a meta-analysis of N and P mineralization from leaves and needles in forest ecosystems and included 112 studies, 511 litterbag sequences, and 3225 observations. Of the compiled data, net mineralization occurred in 54 studies, 372 litterbag sequences, and 1308 observations. We compare re-mineralization ratios across temperate and tropical forest systems to elucidate patterns across latitudes. We report strong and systematic regularities between decomposing litter N/P and the N/P of re-mineralization across global forests. Overall, the N/P of mineralization scales at a slope close to unity (slope = 1.4, R2=0.53, n=372), with a tendency toward higher N/P in tropical vs. temperate forests. The N/P of tropical forest re-mineralization is equal to 30/1 (R2=0.55; n=691), corresponding with the high N/P of plant foliage and litter within this biome. In contrast, the N/P of mineralization is equal to 5/1 in temperate forests (R2=0.34; n=617). A modal anomaly analysis further reveals the central tendency of mineralization N/P on that of litter, with departures from the average case tending toward a lower N/P of mineralization compared to litter substrates. These deviations suggest the potential for preferential N retention or enhanced P mineralization, or both, as opposed to more rapid N releases from decomposing organic matter. The

  20. The contentious nature of soil organic matter.

    PubMed

    Lehmann, Johannes; Kleber, Markus

    2015-12-03

    The exchange of nutrients, energy and carbon between soil organic matter, the soil environment, aquatic systems and the atmosphere is important for agricultural productivity, water quality and climate. Long-standing theory suggests that soil organic matter is composed of inherently stable and chemically unique compounds. Here we argue that the available evidence does not support the formation of large-molecular-size and persistent 'humic substances' in soils. Instead, soil organic matter is a continuum of progressively decomposing organic compounds. We discuss implications of this view of the nature of soil organic matter for aquatic health, soil carbon-climate interactions and land management.

  1. Rare earth elements and neodymium isotopes in sedimentary organic matter

    NASA Astrophysics Data System (ADS)

    Freslon, Nicolas; Bayon, Germain; Toucanne, Samuel; Bermell, Sylvain; Bollinger, Claire; Chéron, Sandrine; Etoubleau, Joel; Germain, Yoan; Khripounoff, Alexis; Ponzevera, Emmanuel; Rouget, Marie-Laure

    2014-09-01

    (inferred from the analysis of local surface seawater). A notable exception is the case of organic matter (OM) fractions leached from cold seep sediment samples, which sometimes exhibit εNd values markedly different from both terrigenous and surface seawater signatures. This suggests that a significant fraction of organic compounds in these sediments may be derived from chemosynthetic processes, recycling pore water REE characterized by a distinct isotopic composition. Overall, our results confirm that organic matter probably plays an important role in the oceanic REE budget, through direct scavenging and remineralization within the water column. Both the high REE abundances and the shape of shale-normalized patterns for leached SOM also suggest that OM degradation in sub-surface marine sediments during early diagenesis could control, to a large extent, the distribution of REE in pore waters. Benthic fluxes of organic-bound REE could hence substantially contribute to the exchange processes between particulates and seawater that take place at ocean margins. Neodymium isotopes could provide useful information for tracing the origin (terrestrial versus marine) and geographical provenance of organic matter, with potential applications in paleoceanography. In particular, future studies should further investigate the potential of Nd isotopes in organic compounds preserved in sedimentary records for reconstructing past variations of surface ocean circulation.

  2. Tracing the long-term microbial production of recalcitrant fluorescent dissolved organic matter in seawater

    NASA Astrophysics Data System (ADS)

    Jørgensen, Linda; Stedmon, Colin A.; Granskog, Mats A.; Middelboe, Mathias

    2014-04-01

    The majority of dissolved organic matter (DOM) in the ocean is resistant to microbial degradation, yet its formation remains poorly understood. The fluorescent fraction of DOM can be used to trace the formation of recalcitrant DOM (RDOM). A long-term (> 1 year) experiment revealed 27-52% removal of dissolved organic carbon and a nonlinear increase in RDOM fluorescence associated with microbial turnover of semilabile DOM. This fluorescence was also produced using glucose as the only initial carbon source, suggesting that degradation of prokaryote remnants contributes to RDOM. Our results indicate that the formation of a fluorescent RDOM component depends on the bioavailability of the substrate: the less labile, the larger the production of fluorescent RDOM relative to organic carbon remineralized. The anticipated increase in microbial carbon demand due to ocean warming can potentially force microbes to degrade less labile substrates, thereby increasing RDOM production and stimulating ocean carbon storage.

  3. Sedimentary organic matter distributions, burrowing activity, and biogeochemical cycling: Natural patterns and experimental artifacts

    NASA Astrophysics Data System (ADS)

    Michaud, Emma; Aller, Robert, C.; Stora, Georges

    2010-11-01

    resources or in sediment mechanical properties associated with treatments, the latter in part coupled to remineralization processes such as exopolymer production, may explain the burrowing responses. In addition to demonstrating how species may respond to physical sedimentation events (substrate homogenization) and patterns of reactive organic matter redistribution, these experiments suggest that infaunal species interactions in microcosms, including the absolute and relative fluxes of remineralized solutes, may be subject to artifacts depending on exactly how sediments are introduced experimentally. Nonlocal transport and cylinder microenvironment transport - reaction models readily demonstrate how the multiple interactions between burrowing patterns and remineralization rate distributions can alter relative flux balances, decomposition pathways, and time to steady state.

  4. Priming of native soil organic matter by pyrogenic organic matter

    NASA Astrophysics Data System (ADS)

    DeCiucies, Silene; Dharmakeerthi, Saman; Whitman, Thea; Woolf, Dominic; Lehmann, Johannes

    2015-04-01

    Priming, in relation to pyrogenic organic matter (PyOM), describes the change in mineralization rate of non-pyrogenic ("native") soil organic matter (nSOM) due to the addition of PyOM. Priming may be 'positive', in that the addition of pyC increases the mineralization rate of native SOM, or 'negative', in that the mineralization rate of nSOM is decreased. Reasons for increased mineralization may include: (i) co-metabolism: microbial decomposition of labile C-additions increases microbial activity, and facilitates additional decomposition of npSOC by active enzymes; (ii) stimulation: substrate additions result in lifted pH, nutrient, oxygen, or water constraints resulting in increased microbial activity. Decreased mineralization may be a result of: (i) inhibition: the opposite of stimulation whereby constraints are aggravated by substrate addition. Substrate addition may also cause inhibition by interfering with enzymes or signaling compounds; (ii) preferential substrate utilization: labile fraction of PyOM additions are preferentially used up by microbes thus causing a decrease in nSOC decomposition; (iii) sorption: organic compounds are adsorbed onto PyOM surfaces, decreasing their rate of mineralization; (iv) stabilization: formation of organo-mineral associations forms stable SOC pools. We have conducted a suite of experiments to investigate these potential interactions. In a seven year long incubation study, PyOM additions increased total OM mineralization for the first 2.5 years, was equal to control after 6.2 years, and was 3% lower after 7.1 years. Cumulative nSOM mineralization was 23% less with the PyOM additions than without, and over 60% of the added PyOM was present in the labile soil fraction after the 7.1 year incubation. Two additional incubation studies, one with and without plants, showed greater nSOM mineralization in the short term and lower nSOM mineralization over the long term. Increased nSOC mineralization due to the presence of plants was

  5. Modeling studies of dissolved organic matter cycling in Santa Barbara Basin (CA, USA) sediments

    NASA Astrophysics Data System (ADS)

    Burdige, David J.; Komada, Tomoko; Magen, Cédric; Chanton, Jeffrey P.

    2016-12-01

    Here we describe new reaction-transport models for the cycling of dissolved organic matter (DOM, both dissolved organic carbon [DOC] and dissolved organic nitrogen [DON]) in anoxic marine sediments, and apply these models to data from Santa Barbara Basin sediment cores (maximum depth of 4.6 m). Model results show that most organic carbon (and nitrogen) flow in the sediments occurs through reactive DOM intermediates that turn over rapidly to produce inorganic remineralization end-products. Refractory DOM is also produced, and the vast majority of this refractory DOM is not remineralized and either escapes as a benthic flux across the sediment-water interface or is buried. Except near the sediment surface, refractory DOM represents >95% of the total pore water DOM. Pore water DOM appears to be consistently depleted in nitrogen as compared to its source organic matter, which may be the result of differential production of carbon- versus nitrogen-containing refractory DOM during remineralization. Refractory DOC (DOCr) in Santa Barbara Basin sediment pore waters is largely produced from degradation of sediment particulate organic carbon (POC). In addition, there is an upward basal flux of DOCr that is strongly depleted in 14C (-810‰). The Δ14C value of DOCr varies according to its source, ranging from +60‰ (a component of surface sediment POC enriched with radiocarbon from nuclear weapons testing in the 1960's) to -810‰ (the basal DOC flux). Each contributes to the DOCr benthic flux, which has a weighted-average Δ14C value of -40‰. The model-determined DOCr benthic flux is roughly half of the total DOC benthic flux, consistent with observations in the literature that sediments are a source of both labile and refractory DOC to bottom waters. These results support previous arguments that sediment benthic fluxes represent an important source of refractory DOC to the oceans. The benthic flux of refractory DOC from these sediments may also contribute pre-aged DOC

  6. Environmental factors regulating soil organic matter chlorination

    NASA Astrophysics Data System (ADS)

    Svensson, Teresia; Montelius, Malin; Reyier, Henrik; Rietz, Karolina; Karlsson, Susanne; Lindberg, Cecilia; Andersson, Malin; Danielsson, Åsa; Bastviken, David

    2016-04-01

    Natural chlorination of organic matter is common in soils. Despite the widespread abundance of soil chlorinated soil organic matter (SOM), frequently exceeding soil chloride abundance in surface soils, and a common ability of microorganisms to produce chlorinated SOM, we lack fundamental knowledge about dominating processes and organisms responsible for the chlorination. To take one step towards resolving the terrestrial chlorine (Cl) puzzle, this study aims to analyse how environmental factors influence chlorination of SOM. Four factors were chosen for this study: soil moisture (W), nitrogen (N), chloride (Cl) and organic matter quality (C). These factors are all known to be important for soil processes. Laboratory incubations with 36Cl as a Cl tracer were performed in a two soil incubation experiments. It was found that addition of chloride and nitrogen seem to hamper the chlorination. For the C treatment, on the other hand, the results show that chlorination is enhanced by increased availability of labile organic matter (glucose and maltose). Even higher chlorination was observed when nitrogen and water were added in combination with labile organic matter. The effect that more labile organic matter strongly stimulated the chlorination rates was confirmed by the second separate experiment. These results indicate that chlorination was not primarily a way to cut refractory organic matter into digestible molecules, representing one previous hypothesis, but is related with microbial metabolism in other ways that will be further discussed in our presentation.

  7. Bacterial Activity and Organic Matter Turnover in Oxygen Deficient Waters of the Baltic Sea

    NASA Astrophysics Data System (ADS)

    Piontek, J.; Massmig, M.; Endres, S.; Le Moigne, F. A. C.; Bange, H. W.; Engel, A.

    2016-02-01

    The Baltic Sea is an enclosed marine system that suffers from expanding zones of oxygen deficiency due to limited ventilation by the episodic inflow of oxygenated North Sea water combined with high anthropogenic nutrient loads. In particular coastal areas are strongly influenced by eutrophication that leads to enhanced microbial oxygen consumption and sporadic anoxia even at shallow sites. It has been shown that oxygen availability is a powerful determinant of the taxonomic composition of prokaryotic communities in deep waters of the Baltic Sea. However, it remains unclear if community changes in response to low oxygen impact carbon remineralization or if functional redundancy prevents effects on major biogeochemical processes driven by bacterial activity. Our study includes monthly samplings at a coastal time series station over three annual cycles with recurring anoxic periods in late summer. Furthermore, sampling was accomplished in the deep Gotland Basin, where a permanent pycnocline prevents vertical mixing. We determined rates of extracellular glucosidase, aminopeptidase and phosphatase, as well as bacterial protein production using fluorescent and radioactive labelled substrate analogues, respectively. The rate measurements were combined with the analysis of organic matter concentration and composition by different analytical tools. Field data and experimental work show that enzymatic polymer hydrolysis, bacterial biomass production and growth rates in oxygen deficient waters of the Baltic Sea are not inherently lower than in oxic waters. Instead, results reveal that the reactivity of organic carbon and the availability of inorganic nutrients are more powerful constraints on organic matter turnover in oxygen deficient zones of the Baltic Sea. Our results imply that oxygen availability alone is not the decisive factor for heterotrophic bacterial activity in deep waters, instead it is part of a multiple environmental control of carbon remineralization.

  8. Chemodestructive fractionation of soil organic matter

    NASA Astrophysics Data System (ADS)

    Popov, A. I.; Rusakov, A. V.

    2016-06-01

    The method of chemodestructive fractionation is suggested to assess the composition of soil organic matter. This method is based on determination of the resilience of soil organic matter components and/or different parts of organic compounds to the impact of oxidizing agents. For this purpose, a series of solutions with similar concentration of the oxidant (K2Cr2O7), but with linearly increasing oxidative capacity was prepared. Chemodestructive fractionation showed that the portion of easily oxidizable (labile) organic matter in humus horizons of different soil types depends on the conditions of soil formation. It was maximal in hydromorphic soils of the taiga zone and minimal in automorphic soils of the dry steppe zone. The portion of easily oxidizable organic matter in arable soils increased with an increase in the rate of organic fertilizers application. The long-lasting agricultural use of soils and burying of the humus horizons within the upper one-meter layer resulted in the decreasing content of easily oxidizable organic matter. It was found that the portion of easily oxidizable organic matter decreases by the mid-summer or fall in comparison with the spring or early summer period.

  9. What is soil organic matter worth?

    PubMed

    Sparling, G P; Wheeler, D; Vesely, E-T; Schipper, L A

    2006-01-01

    The conservation and restoration of soil organic matter are often advocated because of the generally beneficial effects on soil attributes for plant growth and crop production. More recently, organic matter has become important as a terrestrial sink and store for C and N. We have attempted to derive a monetary value of soil organic matter for crop production and storage functions in three contrasting New Zealand soil orders (Gley, Melanic, and Granular Soils). Soil chemical and physical characteristics of real-life examples of three pairs of matched soils with low organic matter contents (after long-term continuous cropping for vegetables or maize) or high organic matter content (continuous pasture) were used as input data for a pasture (grass-clover) production model. The differences in pasture dry matter yields (non-irrigated) were calculated for three climate scenarios (wet, dry, and average years) and the yields converted to an equivalent weight and financial value of milk solids. We also estimated the hypothetical value of the C and N sequestered during the recovery phase of the low organic matter content soils assuming trading with C and N credits. For all three soil orders, and for the three climate scenarios, pasture dry matter yields were decreased in the soils with lower organic matter contents. The extra organic matter in the high C soils was estimated to be worth NZ$27 to NZ$150 ha(-1) yr(-1) in terms of increased milk solids production. The decreased yields from the previously cropped soils were predicted to persist for 36 to 125 yr, but with declining effect as organic matter gradually recovered, giving an accumulated loss in pastoral production worth around NZ$518 to NZ$1239 ha(-1). This was 42 to 73 times lower than the hypothetical value of the organic matter as a sequestering agent for C and N, which varied between NZ$22,963 to NZ$90,849 depending on the soil, region, discount rates, and values used for carbon and nitrogen credits.

  10. Early diagenesis of organic matter in sediments off the coast of Peru

    NASA Astrophysics Data System (ADS)

    Rowe, Gilbert T.; Howarth, Robert

    1985-01-01

    Measured rates of SO 4 reducing metabolism and pore water concentrations of SO 4 and NH 4 were used to estimate organic matter regeneration from the sediments in an area of intense upwelling and high primary production off Peru. While the estimated rates of remineralization were high compared to other ecosystems at comparable water depths, this source of nutrients appeared to be on the order of 10% of the phytoplankton demand. Disparities between measured vs modelled estimates of sulfate reduction appear to be a function of the concentration gradients across the sediment-water interfface and mixing by biological and physical processes. The suite of measurements allowed estimation of 'irrigation' and an 'irrigation' coefficient at the nearshore station where measured rates were considerably above those estimated from the pore water sulfate gradient.

  11. Sediment extracted organic matter fluorescence: an archive of organic matter flux and origins?

    NASA Astrophysics Data System (ADS)

    Stedmon, C. A.; Funkey, C. P.; Conley, D. J.

    2016-02-01

    Organic matter buried in sediments contain a record of the intensity and characteristics of organic matter supply from overlying waters through time. A fraction of the organic matter pool can be extracted and characterised using UV-visible spectroscopy (absorption and fluorescence). In this study we investigate the utility of using the optical characteristics of this organic matter pool as a quantitative and qualitative proxy. We use the optical properties of based extracted organic matter from a well characterised Baltic Sea core from the Northern Gotland Deep to infer changes in the intensity and character of organic matter supply over the past 8000 years. Over this period the modern Baltic Sea was formed from its original state as the Ancylus Lake. There are three clear periods of hypoxia which have influenced the supply and quality of organic matter in sediments. The first two periods, the Ancylus-Littorina transgression (7000-4000 B.P.) and Medieval Climate Anomaly (1400-700 years B.P.) are attributed to enhanced stratification. The third is recognised as driven by anthropogenic eutrophication over the past 100 years. The optical properties of sediment extracted organic matter from these periods not only follow the trends in sediment organic carbon content but also show clear differences organic matter characteristics not apparent in other measurements. The series of hypoxic events within the Ancylus-Littorina transgression differ from each other. While organic matter from 7000-6500 years BP is similar to that from MCA and modern times, subsequent Ancylus-Littorina transgression periods of hypoxia are different suggesting different origins of organic matter. Organic matter optical characteristics here are more similar to material from periods will less/no hypoxia.

  12. Dissolved organic carbon export and subsequent remineralization in the mesopelagic and bathypelagic realms of the North Atlantic basin

    NASA Astrophysics Data System (ADS)

    Carlson, Craig A.; Hansell, Dennis A.; Nelson, Norman B.; Siegel, David A.; Smethie, William M.; Khatiwala, Samar; Meyers, Meredith M.; Halewood, Elisa

    2010-08-01

    Dissolved organic carbon (DOC) data are presented from three meridional transects conducted in the North Atlantic as part of the US Climate Variability (CLIVAR) Repeat Hydrography program in 2003. The hydrographic sections covered a latitudinal range of 6°S to 63°N along longitudes 20°W (CLIVAR line A16), 52°W (A20) and 66°W (A22). Over 3700 individual measurements reveal unprecedented detail in the DOC distribution and systematic variations in the mesopelagic and bathypelagic zones of the North Atlantic basin. Latitudinal gradients in DOC concentrations combined with published estimates of ventilation rates for the main thermocline and North Atlantic Deep Water (NADW) indicate a net DOC export rate of 0.081 Pg C yr -1 from the epipelagic zone into the mesopelagic and bathypelagic zones. Model II regression and multiple linear regression models applied to pairwise measures of DOC and chlorofluorocarbon (CFC-12) ventilation age, retrieved from major water masses within the main thermocline and NADW, indicate decay rates for exported DOC ranging from 0.13 to 0.94 μmol kg -1 yr -1, with higher DOC concentrations driving higher rates. The contribution of DOC oxidation to oxygen consumption ranged from 5 to 29% while mineralization of sinking biogenic particles drove the balance of the apparent oxygen utilization.

  13. Dissolved Organic Carbon Distribution, Export and Subsequent Remineralization in the Mesopelagic and Bathypelagic Realms of the North Atlantic Basin

    NASA Astrophysics Data System (ADS)

    Carlson, C. A.; Hansell, D. A.; Nelson, N. B.; Siegel, D. A.; Smethie, W. M.; Khatiwala, S.

    2010-12-01

    Dissolved organic carbon (DOC) was measured for three meridional transects in the North Atlantic as part of the US CLIVAR Repeat Hydrography program in 2003.The hydrographic sections covered a latitudinal range of 6°S to 63° N along longitudes 20°W (CLIVAR line A16), 52°W (A20) and 66°W (A22). Over 3700 individual measurements reveal unprecedented detail in the DOC distribution and systematic variations in the mesopelagic and bathypelagic zones of the North Atlantic basin. Latitudinal gradients in DOC concentrations combined with published estimates of ventilation rates for the main thermocline and North Atlantic Deep Water (NADW) indicate a net DOC export rate of 0.081 Pg C yr-1 from of the epipelagic zone into the mesopelagic and bathypelagic zones. Model II regression and multiple linear regression models applied to pairwise measures of DOC and chlorofluorocarbon (CFC-12) ventilation age, retrieved from major water masses within the main thermocline and NADW, indicate decay rates for exported DOC ranging from 0.13 to 0.94 µmol kg-1 yr-1, with higher DOC concentrations driving higher rates. The contribution of DOC oxidation to oxygen consumption ranged from 5 to 29% while mineralization of sinking biogenic particles drove the balance of the apparent oxygen utilization.

  14. Factors Regulating Soil Organic Matter Chlorination

    NASA Astrophysics Data System (ADS)

    Svensson, T.; Gustavsson, M.; Reyier, H.; Rietz, K.; Karlsson, S.; Göransson, C.; Andersson, M.; Öberg, G.; Bastviken, D.

    2013-12-01

    Natural chlorination of organic matter is a common process in various soils. Despite the widespread abundance of soil organic chlorine, knowledge on the processes and regulation of soil organic matter chlorination are modest. The purpose of this study is to elucidate how environmental factors may influence chlorination of organic matter in soil. Four factors were chosen for this study; water content, and nitrogen, organic carbon, and chloride concentrations. The variables are all known in different ways as important for microbes and transformation of chlorine in soil. The soil was collected from 5-15 cm depth in a coniferous forest southeast of Sweden. To test how the selected factors influenced chlorination of organic matter, we used soil laboratory incubations using 36Cl-chloride as a radioisotopic marker. A multivariate factorial design with two levels of i) soil moisture, ii) chloride amendment, iii) nitrogen amendment, and iv) glucose and maltose addition was used to simultaneously test for possible combination effects for all factors. A known radioactivity of 36chloride was added to the soil samples and incubated with four different factor treatments during an incubation period of 15 and 60 days. This presentation will discuss the results of this study including what combination of factors enhanced or hampered chlorination and thereby discuss previous observed variability of organic chlorine and chloride in soil.

  15. Spectral mapping of soil organic matter

    NASA Technical Reports Server (NTRS)

    Kristof, S. J.; Baumgardner, M. F.; Johannsen, C. J.

    1974-01-01

    Multispectral remote sensing data were examined for use in the mapping of soil organic matter content. Computer-implemented pattern recognition techniques were used to analyze data collected in May 1969 and May 1970 by an airborne multispectral scanner over a 40-km flightline. Two fields within the flightline were selected for intensive study. Approximately 400 surface soil samples from these fields were obtained for organic matter analysis. The analytical data were used as training sets for computer-implemented analysis of the spectral data. It was found that within the geographical limitations included in this study, multispectral data and automatic data processing techniques could be used very effectively to delineate and map surface soils areas containing different levels of soil organic matter.

  16. Polydopamine-induced tooth remineralization.

    PubMed

    Zhou, Yun-Zhi; Cao, Ying; Liu, Wei; Chu, Chun Hung; Li, Quan-Li

    2012-12-01

    Inspired by mussel bioadhesion in nature, dopamine is extensively used for biomaterial surface modification. In this study, we coated dopamine on demineralized enamel and dentin surfaces to evaluate the effect of polydopamine coating on dental remineralization. Dental slices containing enamel and dentin were first etched with 37% phosphoric acid for 2 min, followed by immersion in a 2 mg/mL freshly prepared solution of dopamine (10 mM Tris buffer, pH 8.5) for approximately 24 h at room temperature in the dark to obtain polydopamine coating. Then, the dental slices with and without polydopamine coating were immersed in the supersaturated solution of calcium and phosphate at 37 °C for 2 and 7 days. The supersaturated solution of calcium and phosphate was refreshed each day. The precipitates were characterized by SEM, XRD, FTIR, microhardness, and nanoscratch analyses. No significant difference was observed in the remineralization of enamel whether it was coated with polydopamine or not. However, a significant difference was found in dentin remineralization between dentin with and without polydopamine coating. Polydopamine coating remarkably promoted demineralized dentin remineralization, and all dentin tubules were occluded by densely packed hydroxyapatite crystals. Thus, coating polydopamine on dental tissue surface may be a simple universal technique to induce enamel and dentin remineralization simultaneously.

  17. Priming of Native Soil Organic Matter by Pyrogenic Organic Matter

    NASA Astrophysics Data System (ADS)

    DeCiucies, S.; Lehmann, J.; Woolf, D.; Whitman, T.

    2016-12-01

    Within the global carbon (C) cycle, soil C makes up a critical and active pool. Pyrogenic C, (PyC) or black C, contributes to this pool, and has been shown to change the turnover rate of the non-pyrogenic soil organic carbon (nSOC) associated with it. This change in rate of mineralization is referred to as priming, which can be negative or positive. There are many possible mechanisms that may be causing this priming effect, both biological and chemical. This study employs incubation experiments to identify and parse these potential mechanisms, focusing on negative priming mechanisms which may have importance in global carbon storage and carbon cycling models. Continuous respiration measurements of soil/char and soil/biomass incubations using isotopically labeled biomass (13C and 15N) indicate that priming interactions are more significant in soils with higher carbon contents, and that higher temperature chars induce more negative priming over time. Current incubations are exploring the effects of chars pyrolyzed at different temperatures, chars extracted of DOC versus non-extracted, soils with differing carbon contents, and the effects of pH and nutrient adjusting incubations. We will continue to examine the contribution of the different mechanisms by isolating variables such as nutrient addition, soil texture, char application rate, and mineral availability. We anticipate that sorption on PyOM surfaces are important in nSOM stabilization and will continue to study these effects using highly labeled substrates and nano secondary ion mass spectrometry (nano-SIMS).

  18. Rapid organic matter sulfurization in sinking particles from the Cariaco Basin water column

    NASA Astrophysics Data System (ADS)

    Raven, Morgan Reed; Sessions, Alex L.; Adkins, Jess F.; Thunell, Robert C.

    2016-10-01

    Organic matter (OM) burial in marine sediments is a potentially important control on global climate and the long-term redox state of the earth's surface. Still, we have only a limited understanding of the processes that stabilize OM and facilitate its preservation in the geologic record. Abiotic reactions with (poly)sulfides can enhance the preservation potential of OM, but for this process to be significant it needs to compete with OM remineralization, the majority of which occurs before sinking particles reach the sea floor. Here we investigate whether OM sulfurization occurs within sinking particles in the Cariaco Basin, a modern sulfidic marine environment with high rates of OM burial. Proto-kerogen in sinking particles is frequently more sulfur-rich and 34S-depleted than expectations for biomass, with a composition that is difficult to explain by mixing with resuspended or terrigenous material. Instead, it appears that sulfur is being incorporated into OM on a timescale of days in sinking particles. The flux of this abiogenic organic S from particles is equivalent to approximately two-thirds of the total amount of proto-kerogen S at 10 cm depth in underlying sediments (ODP Core 1002B); after 6000 years of more gradual sulfurization reactions, potential water column sources are still equivalent to nearly half of the total proto-kerogen S in Cariaco sediments. Water column sulfurization is most extensive during periods of upwelling and high primary productivity and appears to involve elemental S, possibly via polysulfides. This process has the potential to deliver large amounts of OM to the sediments by making it less available for remineralization, generating OM-rich deposits. It represents a potentially dynamic sink in the global carbon cycle that can respond to changes in environmental conditions, including the size and intensity of O2-depleted environments. Water column OM sulfurization could also have played a more significant role in the carbon cycle

  19. Organic Matter in the Contemporary Ocean

    NASA Astrophysics Data System (ADS)

    Eglinton, T. I.; Repeta, D. J.

    2003-12-01

    This chapter summarizes selected aspects of our current understanding of the organic carbon (OC) cycle as it pertains to the modern ocean, including underlying surficial sediments. We briefly review present estimates of the size of OC reservoirs and the fluxes between them. We then proceed to highlight advances in our understanding that have occurred since the late 1980s, especially those which have altered our perspective of the ways organic matter is cycled in the oceans. We have focused on specific areas where substantial progress has been made, although in most cases our understanding remains far from complete. These are the fate of terrigenous OC inputs in the ocean, the composition of oceanic dissolved organic matter (DOM), the mechanisms of OC preservation, and new insights into microbial inputs and processes. In each case, we discuss prevailing hypotheses concerning the composition and fate of organic matter derived from the different inputs, the reactivity and relationships between different organic matter pools, and highlight current gaps in our knowledge.The advances in our understanding of organic matter cycling and composition has stemmed largely from refinements in existing methodologies and the emergence of new analytical capabilities. Molecular-level stable carbon and nitrogen isotopic measurements have shed new light on a range of biogeochemical processes. Natural abundance of radiocarbon data has also been increasingly applied as both a tracer and source indicator in studies of organic matter cycling. As for 13C, bulk 14C measurements are now complemented by measurements at the molecular level, and the combination of these different isotopic approaches has proven highly informative. The application of multinuclear solid- and liquid-state nuclear magnetic resonance (NMR) spectroscopy has provided a more holistic means to examine the complex array of macromolecules that appears to comprise both dissolved and particulate forms of organic matter. New

  20. Control of organic matter on the magnetic properties of surficial marine sediments. A simple kinetic model

    NASA Astrophysics Data System (ADS)

    Mohamed Falcon, K. J.; Andrade, A.; Rey, D.; Rubio, B.

    2014-12-01

    Magnetic properties of marine sediments in the Galician Rias, in NW Spain, have shown that in these shallow marine settings the magnetic mineral assemblage, and its bulk magnetic properties, is controlled by grain size, wave climate, and organic matter content. The grain size effect is explained by concentration of diamagnetic biogenic carbonates in the coarse fraction, which dilutes the concentration-dependent magnetic properties. Furthermore, this effect is enhanced by the hydrodynamic sorting of the heavy minerals, like magnetite, that become concentrated in the finer fractions. Waves on the other hand concentrate the coarser bioclasts in the shallower areas along the coastal margins of the rias, and consequently these areas show the lowest magnetic mineral concentrations. Magnetic minerals are therefore more abundant in the deeper central axis and towards the external, more oceanic, areas of the rias. Another effect of waves is periodic resuspension of fine sediments, which allows them to be reoxigenated preventing the onset of reductive diagenesis. This effect is best seen in sediment cores, where organic matter remineralization promotes dissolution of magnetic iron oxides and oxyhydroxides. Areas where resuspension is frequent and/or deeper areas where sediments stay in the water column for longer have lower degrees of reductive early diagenesis. In addition to its downcore effect, organic matter also controls the magnetic properties of surficial sediments. Our results in the Ria de Muros, at the north of our study area, have shown that a simple kinetic model is enough to quantify the effect of organic matter content on the dissolution of magnetite. We have found that a Total Organic Carbon increase of 0.35% reduces magnetite concentration of surface samples by half. These effects observed in the Ria de Muros have also been confirmed for published results in the southern Rias Baixas previously studied by our research group.

  1. Organic Matter Loading Affects Lodgepole Pine Seedling Growth

    NASA Astrophysics Data System (ADS)

    Wei, Xiaohua; Li, Qinglin; Waterhouse, M. J.; Armleder, H. M.

    2012-06-01

    Organic matter plays important roles in returning nutrients to the soil, maintaining forest productivity and creating habitats in forest ecosystems. Forest biomass is in increasing demand for energy production, and organic matter has been considered as a potential supply. Thus, an important management question is how much organic matter should be retained after forest harvesting to maintain forest productivity. To address this question, an experimental trial was established in 1996 to evaluate the responses of lodgepole pine seedling growth to organic matter loading treatments. Four organic matter loading treatments were randomly assigned to each of four homogeneous pine sites: removal of all organic matter on the forest floor, organic matter loading quantity similar to whole-tree-harvesting residuals left on site, organic matter loading quantity similar to stem-only-harvesting residuals, and organic matter loading quantity more similar to what would be found in disease- or insect-killed stands. Our 10-year data showed that height and diameter had 29 and 35 % increase, respectively, comparing the treatment with the most organic matter loading to the treatment with the least organic matter loading. The positive response of seedling growth to organic matter loading may be associated with nutrients and/or microclimate change caused by organic matter, and requires further study. The dynamic response of seedling growth to organic matter loading treatments highlights the importance of long-term studies. Implications of those results on organic matter management are discussed in the context of forest productivity sustainability.

  2. Organic matter loading affects lodgepole pine seedling growth.

    PubMed

    Wei, Xiaohua; Li, Qinglin; Waterhouse, M J; Armleder, H M

    2012-06-01

    Organic matter plays important roles in returning nutrients to the soil, maintaining forest productivity and creating habitats in forest ecosystems. Forest biomass is in increasing demand for energy production, and organic matter has been considered as a potential supply. Thus, an important management question is how much organic matter should be retained after forest harvesting to maintain forest productivity. To address this question, an experimental trial was established in 1996 to evaluate the responses of lodgepole pine seedling growth to organic matter loading treatments. Four organic matter loading treatments were randomly assigned to each of four homogeneous pine sites: removal of all organic matter on the forest floor, organic matter loading quantity similar to whole-tree-harvesting residuals left on site, organic matter loading quantity similar to stem-only-harvesting residuals, and organic matter loading quantity more similar to what would be found in disease- or insect-killed stands. Our 10-year data showed that height and diameter had 29 and 35 % increase, respectively, comparing the treatment with the most organic matter loading to the treatment with the least organic matter loading. The positive response of seedling growth to organic matter loading may be associated with nutrients and/or microclimate change caused by organic matter, and requires further study. The dynamic response of seedling growth to organic matter loading treatments highlights the importance of long-term studies. Implications of those results on organic matter management are discussed in the context of forest productivity sustainability.

  3. [Infrared spectroscopy application in soil organic matter].

    PubMed

    Wu, J; Xi, S; Jiang, Y

    1998-02-01

    As an important method to study the constitution and properties of macromolecular organic compounds, the infrared spectroscopy has been more and more widely taken in the researches of soil organic matters (SOM). Especially,the application of FTIR and the combined uses of FTIR with chromatogram etc. have made the researches of SOM get a great progress in many aspects. In this paper, the infrared spectroscopy applications were reviewed in SOM. It includes the following contents: the methods to study SOM by IR, studies on the constitution of soil humic substances (SHS), extraction of SOM and classification of SHS, decomposition, transformation and humification of organic matters, the differences of SOM in different situations, the interactions of SHS with metais, clay minerals and other organics in soil.

  4. Laboratory study of nitrogen and phosphorus remineralization during the decomposition of coastal plankton and seston

    NASA Astrophysics Data System (ADS)

    Garber, Jonathan H.

    1984-06-01

    The decomposition of cultured marine phytoplankton ( Skeletonema costatum) and natural estuarine seston from Narragansett Bay, RI, was studied at two temperatures (8°C and 18°C) in bottles containing sterile bay-water (30‰) and in bay-water with micro-organisms small enough to pass through a glass fibre filter (nominally < 1μ). About 50% of the particulate organic nitrogen (PON) and particulate phosphorus (PP) was immediately released to the water in dissolved organic forms from both types of organic matter. Comparison of changes in the dissolved organic nitrogen (DON) fraction in the sterile and non-sterile systems indicated that nearly all of the DON initially released was subsequently remineralized. Ammonification proceeded only in non-sterile bay-water. 20-25% of the PP was converted to dissolved inorganic-P (DIP) fraction after only 7 h in both sterile and non-sterile bay-water. Following autolytic releases of DON, DOP and DIP the initial rates of N and P remineralization were temperature dependent: Q 10 values for PON and PP decay during first phase of microbially mediated decomposition ranged from 1·3 to 6·4. Rates of remineralization then slowed so that about equal amounts of nutrients were remineralized (45-50% of the N and 57-60% of the P in the phytoplankton and 60-63% of the N and 36-60% of the P in the natural seston) after 30 days storage at either temperature. During 30 days of decomposition in non-sterile seawater the N/P ratios in the dissolved inorganic fractions converged on the ratios of total-N/total-P initially present in the bottles. Kinetic analysis of the decay of total organic-N (TON) and total organic-P (TOP) in the non-sterile systems and analysis of similar sets found in the literature showed that the initial stages of the decomposition of N and P from planktonic POM in vitro could be modelled as the sequential decay, at first-order rates, of two particulate fractions. The first, more labile, fraction comprised about 60% of the

  5. Large-scale variations in the stoichiometry of marine organic matter respiration

    NASA Astrophysics Data System (ADS)

    Devries, Tim; Deutsch, Curtis

    2014-12-01

    The elemental composition of marine organic matter governs resource competition among plankton, and couples the global cycles of carbon, nutrients and oxygen. Observations have revealed systematic large-scale variation in the ratios of these essential elements removed from surface waters by phytoplankton. However, an impact of this variability on deep ocean properties has not been detected. Here we use a data-constrained ocean circulation model and observed long-term mean distributions of dissolved oxygen and the nutrient phosphate to show that there is a threefold variation across latitudes in the amount of dissolved oxygen consumed per unit of phosphate released during organic matter respiration. This pattern of remineralization ratios is shown to significantly modify the extent and distribution of low-oxygen water masses in the interior ocean. We also find that ocean biomes with distinct light and nutrient availability are characterized by different regional stoichiometries. These findings suggest that in a more stratified ocean, an increase in light exposure and decrease in nutrient concentration could raise the C:P ratio of phytoplankton, and the associated carbon storage by the ocean’s biological pump.

  6. Lability of Secondary Organic Particulate Matter

    SciTech Connect

    Liu, Pengfei; Li, Yong Jie; Wang, Yan; Giles, Mary K.; Zaveri, Rahul A.; Bertram, Allan K.; Martin, Scot T.

    2016-10-24

    Accurate simulations of the consenctrations of atmospheric organic particulate matter (PM) are needed for predicting energy flow in the Earth’s climate system. In the past, simulations of organic PM widely assume equilibrium partitioning of semivolatile organic compounds (SVOCs) between the PM and surrounding vapor. Herein, we test this assumption by measuring evaporation rates and associated vapor mass concentration of organic films representative of atmospheric PM. For films representing anthropogenic PM, evaporation rates and vapor mass concentrations increased above a threshold relative humidity (RH), indicating equilibrium partitioning above a transition RH but not below. In contrast for films representing biogenic PM, no threshold was observed, indicating equilibrium partitioning at all RHs. The results suggest that the mass lability of atmospheric organic PM can differ in consequential ways among Earth’s natural biomes, polluted regions, and regions of land-use change, and these differences need to be considered when simulating atmospheric organic PM.

  7. Organic matters: investigating the sources, transport, and fate of organic matter in Fanno Creek, Oregon

    USGS Publications Warehouse

    Sobieszczyk, Steven; Keith, Mackenzie K.; Goldman, Jami H.; Rounds, Stewart A.

    2015-01-01

    The U.S. Geological Survey (USGS), in cooperation with Clean Water Services, recently completed an investigation into the sources, transport, and fate of organic matter in the Fanno Creek watershed. The information provided by this investigation will help resource managers to implement strategies aimed at decreasing the excess supply of organic matter that contributes to low dissolved-oxygen levels in Fanno Creek and downstream in the Tualatin River during summer. This fact sheet summarizes the findings of the investigation.

  8. Remineralization VS Reductive Dissolution Pathway of Phosphorus Cycling: a Case Study in the Chesapeake Bay

    NASA Astrophysics Data System (ADS)

    Jaisi, D. P.; Joshi, S.; Kukkadapu, R. K.; Burdige, D.; Sparks, D. L.

    2015-12-01

    Coastal hypoxia have spread exponentially worldwide due to increased anthropogenic loading of nutrients in coastal waters. Hypoxia exerts an influence on the stability of minerals and organic debris, direction of nutrient flux at the sediment-water interface, and the extent of benthic-pelagic coupling. This study aimed to address fundamental questions related to sediment phosphorus (P) dynamics in response to transient bottom water hypoxia particularly on P effluxes at the sediment-water interface and P burial (as authigenic/vivianite P) under two pathways: remineralization of organic P (coupled C-P pathway) and reductive dissolution of ferric Fe-bound P (coupled Fe-P pathway). Authigenic phosphate isotope data suggest that the regeneration of inorganic P in the sediment from organic matter degradation (remineralization) is the predominant, if not sole, pathway for authigenic P precipitation in the sediments. Interestingly, ferric Fe-bound phosphate oxygen isotopes are heavier than equilibrium. This means that the ferric Fe-bound P pool in these sediments is largely composed of particulate P from terrestrial sources composed primarily of Fe phyllosilicates plus potentially vivianite that are largely resistant against dissolution in the anoxic sediment column. These results collectively support the predominance of coupled C-P pathway of P cycling, rather than Fe-P coupling, in hypoxic environment in the Chesapeake Bay.

  9. Subaerial weathering of sedimentary organic matter

    USGS Publications Warehouse

    Clayton, J.L.; Swetland, P.J.

    1978-01-01

    Small diameter core samples were taken from outcrops of the Permian Phosphoria Formation and the Cretaceous Pierre Shale of the Western United States to determine the effects of weathering on organic matter in shale outcrops. While the Pierre Shale core showed no evidence of weathering, the Phosphoria Formation showed significant reduction of overall organic content and pronounced changes in organic composition over the near-surface interval of the core. Total organic carbon is lower by as much as 60% over the upper 2 ft of the core. Chloroform-soluble organic matter and total hydrocarbon (C15+) concentrations are 50% lower over this same interval. The ratio of saturated to aromatic hydrocarbons decreases steadily with core depth over the upper 2.6 ft of the core. Aromatic hydrocarbons are enriched in the stable carbon-13 isotope by an average of 1.7%. over this same interval. Shallow core samples also show a loss of n-paraffins relative to branched/cyclic compounds in the saturated C15+ fraction. Although the extent of weathering is variable, certain characteristic effects are recognizable and can be applied to the interpretation of outcrop data in organic geochemical studies. ?? 1978.

  10. Isotopic analysis of cometary organic matter

    NASA Astrophysics Data System (ADS)

    Kerridge, J. F.

    1991-04-01

    Carbon isotope ratios have been measured for CN in the coma of Comet Halley and for several CHON particles emitted by Halley. Of these, only the CHON-particle data may be reasonably related to organic matter in the cometary nucleus, but the true range of (C-13)/(C-12) values in those particles is quite uncertain. The D/H ratio in H2O in the Halley coma resembles that in Titan/Uranus.

  11. Peer reviewed: Characterizing aquatic dissolved organic matter

    USGS Publications Warehouse

    Leenheer, Jerry A.; Croué, Jean-Philippe

    2003-01-01

    Whether it causes aesthetic concerns such as color, taste, and odor; leads to the binding and transport of organic and inorganic contaminants; produces undesirable disinfection byproducts; provides sources and sinks for carbon; or mediates photochemical processes, the nature and properties of dissolved organic matter (DOM) in water are topics of significant environmental interest. DOM is also a major reactant in and product of biogeochemical processes in which the material serves as a carbon and energy source for biota and controls levels of dissolved oxygen, nitrogen, phosphorus, sulfur, numerous trace metals, and acidity.

  12. Isolation and chemical characterization of dissolved and colloidal organic matter

    USGS Publications Warehouse

    Aiken, G.; Leenheer, J.

    1993-01-01

    Commonly used techniques for the concentration and isolation of organic matter from water, such as preparative chromatography, ultrafiltration and reverse osmosis, and the methods used to analyze the organic matter obtained by these methods are reviewed. The development of methods to obtain organic matter that is associated with fractions of the dissolved organic carbon other than humic substances, such as organic bases, hydrophilic organic acids and colloidal organic matter are discussed. Methods specifically used to study dissolved organic nitrogen and dissolved organic phosphorous are also discussed. -from Authors

  13. Temperature-dependent remineralization in a warming ocean increases surface pCO2 through changes in marine ecosystem composition

    NASA Astrophysics Data System (ADS)

    Segschneider, Joachim; Bendtsen, Jørgen

    2014-05-01

    Temperature-dependent remineralization of organic matter is, in general, not included in marine biogeochemistry models currently used for Coupled Model Intercomparison Project Phase 5 (CMIP5) climate projections. Associated feedbacks with climate and the carbon cycle have therefore not been quantified. In this study we aim at investigating how temperature-dependent remineralization rates (Q10 = 2) in a warming ocean impact on the marine carbon cycle, and if this may weaken the oceanic sink for anthropogenic CO2. We perturb an Earth system model used for CMIP5 with temperature-dependent remineralization rates of organic matter using representative concentration pathway (RCP)8.5-derived oceanic temperature anomalies for 2100. The result is a modest change of organic carbon export but more important derived effects associated with feedback processes between changed nutrient concentrations and ecosystem structure. As more nutrients are recycled in the euphotic layer, increased primary production causes a depletion of silicate in the surface layer because opal is exported to depth more efficiently than particulate organic carbon. Shifts in the ecosystem occur as diatoms find less favorable conditions. Export production of calcite shells increases causing a decrease in alkalinity and higher surface pCO2. With regard to future climate projections, the results indicate a reduction of oceanic uptake of anthropogenic CO2 of about 0.2 PgC yr-1 towards the end of the 21st century. This is in addition to reductions caused by already identified climate-carbon cycle feedbacks. Similar shifts in the ecosystem as identified here, but driven by external forcing, have been proposed to drive glacial/interglacial changes in atmospheric pCO2. We propose a similar positive feedback between climate perturbations and the global carbon cycle but driven solely by internal marine biogeochemical processes.

  14. Soil organic matter composition affected by potato cropping managements

    USDA-ARS?s Scientific Manuscript database

    Organic matter is a small but important soil component. As a heterogeneous mixture of geomolecules and biomolecules, soil organic matter (SOM) can be fractionated into distinct pools with different solubility and lability. Water extractable organic matter (WEOM) fraction is the most labile and mobil...

  15. Abiotic Bromination of Soil Organic Matter.

    PubMed

    Leri, Alessandra C; Ravel, Bruce

    2015-11-17

    Biogeochemical transformations of plant-derived soil organic matter (SOM) involve complex abiotic and microbially mediated reactions. One such reaction is halogenation, which occurs naturally in the soil environment and has been associated with enzymatic activity of decomposer organisms. Building on a recent finding that naturally produced organobromine is ubiquitous in SOM, we hypothesized that inorganic bromide could be subject to abiotic oxidations resulting in bromination of SOM. Through lab-based degradation treatments of plant material and soil humus, we have shown that abiotic bromination of particulate organic matter occurs in the presence of a range of inorganic oxidants, including hydrogen peroxide and assorted forms of ferric iron, producing both aliphatic and aromatic forms of organobromine. Bromination of oak and pine litter is limited primarily by bromide concentration. Fresh plant material is more susceptible to bromination than decayed litter and soil humus, due to a labile pool of mainly aliphatic compounds that break down during early stages of SOM formation. As the first evidence of abiotic bromination of particulate SOM, this study identifies a mechanistic source of the natural organobromine in humic substances and the soil organic horizon. Formation of organobromine through oxidative treatments of plant material also provides insights into the relative stability of aromatic and aliphatic components of SOM.

  16. Abiotic Bromination of Soil Organic Matter

    SciTech Connect

    Leri, Alessandra C.; Ravel, Bruce

    2015-11-17

    Biogeochemical transformations of plant-derived soil organic matter (SOM) involve complex abiotic and microbially mediated reactions. One such reaction is halogenation, which occurs naturally in the soil environment and has been associated with enzymatic activity of decomposer organisms. Building on a recent finding that naturally produced organobromine is ubiquitous in SOM, we hypothesized that inorganic bromide could be subject to abiotic oxidations resulting in bromination of SOM. Through lab-based degradation treatments of plant material and soil humus, we have shown that abiotic bromination of particulate organic matter occurs in the presence of a range of inorganic oxidants, including hydrogen peroxide and assorted forms of ferric iron, producing both aliphatic and aromatic forms of organobromine. Bromination of oak and pine litter is limited primarily by bromide concentration. Fresh plant material is more susceptible to bromination than decayed litter and soil humus, due to a labile pool of mainly aliphatic compounds that break down during early stages of SOM formation. As the first evidence of abiotic bromination of particulate SOM, this study identifies a mechanistic source of the natural organobromine in humic substances and the soil organic horizon. Formation of organobromine through oxidative treatments of plant material also provides insights into the relative stability of aromatic and aliphatic components of SOM.

  17. Variable C : N : P stoichiometry of dissolved organic matter cycling in the Community Earth System Model

    DOE PAGES

    Letscher, R. T.; Moore, J. K.; Teng, Y. -C.; ...

    2015-01-12

    Dissolved organic matter (DOM) plays an important role in the ocean's biological carbon pump by providing an advective/mixing pathway for ~ 20% of export production. DOM is known to have a stoichiometry depleted in nitrogen (N) and phosphorus (P) compared to the particulate organic matter pool, a fact that is often omitted from biogeochemical ocean general circulation models. However the variable C : N : P stoichiometry of DOM becomes important when quantifying carbon export from the upper ocean and linking the nutrient cycles of N and P with that of carbon. Here we utilize recent advances in DOM observationalmore » data coverage and offline tracer-modeling techniques to objectively constrain the variable production and remineralization rates of the DOM C : N : P pools in a simple biogeochemical-ocean model of DOM cycling. The optimized DOM cycling parameters are then incorporated within the Biogeochemical Elemental Cycling (BEC) component of the Community Earth System Model (CESM) and validated against the compilation of marine DOM observations. The optimized BEC simulation including variable DOM C : N : P cycling was found to better reproduce the observed DOM spatial gradients than simulations that used the canonical Redfield ratio. Global annual average export of dissolved organic C, N, and P below 100 m was found to be 2.28 Pg C yr-1 (143 Tmol C yr-1, 16.4 Tmol N yr-1, and 1 Tmol P yr-1, respectively, with an average export C : N : P stoichiometry of 225 : 19 : 1 for the semilabile (degradable) DOM pool. Dissolved organic carbon (DOC) export contributed ~ 25% of the combined organic C export to depths greater than 100 m.« less

  18. The surface area of soil organic matter

    USGS Publications Warehouse

    Chiou, C.T.; Lee, J.-F.; Boyd, S.A.

    1990-01-01

    The previously reported surface area for soil organic matter (SOM) of 560-800 m2/g as determined by the ethylene glycol (EG) retention method was reexamined by the standard BET method based on nitrogen adsorption at liquid nitrogen temperature. Test samples consisted of two high organic content soils, a freeze-dried soil humic acid, and an oven-dried soil humic acid. The measured BET areas for these samples were less than 1 m2/g, except for the freeze-dried humic acid. The results suggest that surface adsorption of nonionic organic compounds by SOM is practically insignificant in comparison to uptake by partition. The discrepancy between the surface areas of SOM obtained by BET and EG methods was explained in terms of the 'free surface area' and the 'apparent surface area' associated with these measurements.The previously reported surface area for soil organic matter (SOM) of 560-800 m2/g as determined by the ethylene glycol (EG) retention method was reexamined by the standard BET method based on nitrogen adsorption at liquid nitrogen temperature. Test samples consisted of two high organic content soils, a freeze-dried soil humic acid, and an oven-dried soil humic acid. The measured BET areas for these samples were less than 1 m2/g, except for the freeze-dried humic acid. The results suggest that surface adsorption of nonionic organic compounds by SOM is practically insignificant in comparison to uptake by partition. The discrepancy between the surface areas of SOM obtained by BET and EG methods was explained in terms of the 'free surface area' and the 'apparent surface area' associated with these measurements.

  19. Organic geochemical analysis of sedimentary organic matter associated with uranium

    USGS Publications Warehouse

    Leventhal, J.S.; Daws, T.A.; Frye, J.S.

    1986-01-01

    Samples of sedimentary organic matter from several geologic environments and ages which are enriched in uranium (56 ppm to 12%) have been characterized. The three analytical techniqyes used to study the samples were Rock-Eval pyrolysis, pyrolysis-gas chromatography-mass spectrometry, and solid-state C-13 nuclear magnetic resonance (NMR) spectroscopy. In samples with low uranium content, the pyrolysis-gas chromatography products contain oxygenated functional groups (as hydroxyl) and molecules with both aliphatic and aromatic carbon atoms. These samples with low uranium content give measurable Rock-Eval hydrocarbon and organic-CO2 yields, and C-13 NMR values of > 30% aliphatic carbon. In contrast, uranium-rich samples have few hydrocarbon pyrolysis products, increased Rock-Eval organic-CO2 contents and > 70% aromatic carbon contents from C-13 NMR. The increase in aromaticity and decrease in hydrocarbon pyrolysis yield are related to the amount of uranium and the age of the uranium minerals, which correspond to the degree of radiation damage. The three analytical techniques give complementary results. Increase in Rock-Eval organic-CO2 yield correlates with uranium content for samples from the Grants uranium region. Calculations show that the amount of organic-CO2 corresponds to the quantity of uranium chemically reduced by the organic matter for the Grants uranium region samples. ?? 1986.

  20. Lability of secondary organic particulate matter

    PubMed Central

    Liu, Pengfei; Li, Yong Jie; Wang, Yan; Gilles, Mary K.; Zaveri, Rahul A.; Bertram, Allan K.

    2016-01-01

    The energy flows in Earth’s natural and modified climate systems are strongly influenced by the concentrations of atmospheric particulate matter (PM). For predictions of concentration, equilibrium partitioning of semivolatile organic compounds (SVOCs) between organic PM and the surrounding vapor has widely been assumed, yet recent observations show that organic PM can be semisolid or solid for some atmospheric conditions, possibly suggesting that SVOC uptake and release can be slow enough that equilibrium does not prevail on timescales relevant to atmospheric processes. Herein, in a series of laboratory experiments, the mass labilities of films of secondary organic material representative of similar atmospheric organic PM were directly determined by quartz crystal microbalance measurements of evaporation rates and vapor mass concentrations. There were strong differences between films representative of anthropogenic compared with biogenic sources. For films representing anthropogenic PM, evaporation rates and vapor mass concentrations increased above a threshold relative humidity (RH) between 20% and 30%, indicating rapid partitioning above a transition RH but not below. Below the threshold, the characteristic time for equilibration is estimated as up to 1 wk for a typically sized particle. In contrast, for films representing biogenic PM, no RH threshold was observed, suggesting equilibrium partitioning is rapidly obtained for all RHs. The effective diffusion rate Dorg for the biogenic case is at least 103 times greater than that of the anthropogenic case. These differences should be accounted for in the interpretation of laboratory data as well as in modeling of organic PM in Earth’s atmosphere. PMID:27791063

  1. Functional remineralization of carious dentin

    NASA Astrophysics Data System (ADS)

    Pugach, Megan Kardon

    A primary goal of dental tissue engineering is the biological reconstruction of tooth substrate destroyed by caries or other diseases affecting tooth mineralization. Traditionally, dentists treat caries by using invasive techniques to remove the diseased dental tissue and restore the lesion, ideally preventing further progression of decay. Success in strategies associated with remineralization of enamel and root caries have contributed to the less invasive prospect of remineralization of dentinal carious lesions. The central hypothesis of this dissertation is that carious dentin lesions can be remineralized if the lesions contain residual mineral. Caries Detector (CD) stained zones (pink, light pink, transparent and normal) of arrested carious dentin lesions were characterized according to microstructure by atomic force microscopy (AFM) imaging, mineral content by digital transverse microradiography, and nanomechanical properties by AFM-based nanoindentation. CD-stained and unstained zones had significantly different microstructure, mineral content and nanomechanical properties. Furthermore, the most demineralized carious zone contained residual mineral. To obtain reproducible, standardized dentin caries lesions, we characterized the lesions from an artificial carious dentin lesion model using a 0.05M acetate demineralization buffer. The artificial caries-like lesions produced by the buffer had similar mineral content and nanomechanical properties in the stained and unstained zones as natural dentin lesions. Both natural and artificial lesions had significant correlations between mineral content and nanomechanical properties. Mineral crystallite size and shape was examined by small angle x-ray scattering. Both natural and artificial carious dentin had different mineral sizes than normal dentin. Collagen in natural and artificial carious dentin lesions was examined by trichrome stain, AFM high-resolution imaging, and UV resonance Raman spectroscopy, to determine if

  2. Mapping Soil Organic Matter with Hyperspectral Imaging

    NASA Astrophysics Data System (ADS)

    Moni, Christophe; Burud, Ingunn; Flø, Andreas; Rasse, Daniel

    2014-05-01

    Soil organic matter (SOM) plays a central role for both food security and the global environment. Soil organic matter is the 'glue' that binds soil particles together, leading to positive effects on soil water and nutrient availability for plant growth and helping to counteract the effects of erosion, runoff, compaction and crusting. Hyperspectral measurements of samples of soil profiles have been conducted with the aim of mapping soil organic matter on a macroscopic scale (millimeters and centimeters). Two soil profiles have been selected from the same experimental site, one from a plot amended with biochar and another one from a control plot, with the specific objective to quantify and map the distribution of biochar in the amended profile. The soil profiles were of size (30 x 10 x 10) cm3 and were scanned with two pushbroomtype hyperspectral cameras, one which is sensitive in the visible wavelength region (400 - 1000 nm) and one in the near infrared region (1000 - 2500 nm). The images from the two detectors were merged together into one full dataset covering the whole wavelength region. Layers of 15 mm were removed from the 10 cm high sample such that a total of 7 hyperspectral images were obtained from the samples. Each layer was analyzed with multivariate statistical techniques in order to map the different components in the soil profile. Moreover, a 3-dimensional visalization of the components through the depth of the sample was also obtained by combining the hyperspectral images from all the layers. Mid-infrared spectroscopy of selected samples of the measured soil profiles was conducted in order to correlate the chemical constituents with the hyperspectral results. The results show that hyperspectral imaging is a fast, non-destructive technique, well suited to characterize soil profiles on a macroscopic scale and hence to map elements and different organic matter quality present in a complete pedon. As such, we were able to map and quantify biochar in our

  3. The fate of airborne polycyclic organic matter.

    PubMed Central

    Nielsen, T; Ramdahl, T; Bjørseth, A

    1983-01-01

    Biological tests have shown that a significant part of the mutagenicity of organic extracts of collected airborne particulate matter is not due to polycyclic aromatic hydrocarbons (PAH). It is possible that part of these unknown compounds are transformation products of PAH. This survey focuses on the reaction of PAH in the atmosphere with other copollutants, such as nitrogen oxides, sulfur oxides, ozone and free radicals and their reaction products. Photochemically induced reactions of PAH are also included. The reactivity of particle-associated PAH is discussed in relation to the chemical composition and the physical properties of the carrier. Recommendations for future work are given. PMID:6825615

  4. How do natural, uncultivated microbes interact with organic matter? Insights from single cell genomics and metagenomics

    NASA Astrophysics Data System (ADS)

    Lloyd, K. G.; Bird, J.; Schreiber, L.; Petersen, D.; Kjeldsen, K.; Schramm, A.; Stepanauskas, R.; Jørgensen, B. B.

    2013-12-01

    Since most of the microbes in marine sediments remain uncultured, little is known about the mechanisms by which these natural communities degrade organic matter (OM). Likewise, little is known about the make-up of labile OM in marine sediments beyond general functional classes such as proteins, carbohydrates, and lipids, measured as monomers. However, microbes have complex interactions with specific polymers within these functional classes, which can be indicated by a microbe's enzymatic toolkit. We found that four single cell genomes of archaea have very different peptidase compositions than four single cells of bacteria, suggesting that archaea and bacteria may play different roles in OM degradation. We also found that predicted extracellular cysteine peptidases, which require chemically reducing conditions, were common in IMG database metagenomes from marine sediments, and absent in those from seawater. This suggests that the pathways, and not just the rates, of OM degradation may differ between seawater and sediments. By comparing enzyme classes in different organisms, or in different types of marine environments, we present an emerging view of the microbial potential for specific carbon remineralization pathways in marine sediments. In addition, the methods we present hold promise for characterizing OM degradation in any environment where genomic information is available.

  5. Inconsistencies between (14)C and short-lived radionuclides-based sediment accumulation rates: Effects of long-term remineralization.

    PubMed

    Baskaran, M; Bianchi, T S; Filley, T R

    2016-09-06

    (14)C is the most widely utilized geochronometer to investigate geological, geochemical and geophysical problems over the past 5 decades. Establishment of precise sedimentation rates is crucial for the reconstruction of paleo-climate, -ecological and - environmental studies when extrapolation of sedimentation rates is utilized for time scales beyond the dating range. However, agreement between short-term and long-term sedimentation rates in anthropogenically unperturbed sediment cores has not been shown. Here we show that the AMS (14)C-based long-term mass accumulation rate (MAR) of an organic-rich (>70%) sediment core from Mud Lake, Florida to be ∼5 times lower than the short-term MAR obtained using (239,240)Pu, (137)Cs and excess (210)Pb ((210)Pbxs). The measured sediment inventories of (210)Pbxs, (137)Cs and (239,240)Pu are comparable to the atmospheric fallout for the sampling site, indicating very little accelerated sediment erosion over the past several decades. Presence of sharp fallout peaks of (239,240)Pu indicates very little sediment mixing. The penetration depths of (137)Cs and (239,240)Pu were found to be much deeper than expected and this is attributed to their post-depositional mobility. MAR calculated using (14)C-ages in successive layers also indicated decreasing MARs with depth, and was reflective of progressive remineralization. Using first-order kinetics, the sediment remineralization rate was found to be 4.4 × 10(-4) y(-1) and propose that over the long-term, remineralization of organic-rich sediment affected the long-term MAR, but not the ratio of (14)C/(12)C. Thus, the MAR and linear sedimentation rate obtained using (14)C (and other isotope-based methods) could be erroneous, although (14)C ages may not be affected by such remineralization. Long-term remineralization rates of organic matter has a direct bearing on the biogeochemical cycling of elements in aqueous systems and mass balance of elements needs to be taken into consideration.

  6. Variable C : N : P stoichiometry of dissolved organic matter cycling in the Community Earth System Model

    DOE PAGES

    Letscher, R. T.; Moore, J. K.; Teng, Y. -C.; ...

    2014-06-16

    Dissolved organic matter (DOM) plays an important role in the ocean's biological carbon pump by providing an advective/mixing pathway for ~ 20% of export production. DOM is known to have a stoichiometry depleted in nitrogen (N) and phosphorus (P) compared to the particulate organic matter pool, a~fact that is often omitted from biogeochemical-ocean general circulation models. However the variable C : N : P stoichiometry of DOM becomes important when quantifying carbon export from the upper ocean and linking the nutrient cycles of N and P with that of carbon. Here we utilize recent advances in DOM observational data coveragemore » and offline tracer-modeling techniques to objectively constrain the variable production and remineralization rates of the DOM C / N / P pools in a simple biogeochemical-ocean model of DOM cycling. The optimized DOM cycling parameters are then incorporated within the Biogeochemical Elemental Cycling (BEC) component of the Community Earth System Model and validated against the compilation of marine DOM observations. The optimized BEC simulation including variable DOM C : N : P cycling was found to better reproduce the observed DOM spatial gradients than simulations that used the canonical Redfield ratio. Global annual average export of dissolved organic C, N, and P below 100 m was found to be 2.28 Pg C yr-1 (143 Tmol C yr-1), 16.4 Tmol N yr-1, and 1 Tmol P yr-1, respectively with an average export C : N : P stoichiometry of 225 : 19 : 1 for the semilabile (degradable) DOM pool. DOC export contributed ~ 25% of the combined organic C export to depths greater than 100 m.« less

  7. Organic Matter in the Outer Solar System

    NASA Technical Reports Server (NTRS)

    Cruiskshank, Dale P.; DeVincenzi, Donald L. (Technical Monitor)

    2000-01-01

    Many solid bodies in the outer Solar System are covered with ices of various compositions, including water, carbon dioxide, methane, nitrogen, and other molecules that are solid at the low temperatures that prevail there. These ices have all been detected by remote sensing observations made with telescopes on Earth, or more recently, spacecraft in orbit (notably Galileo at Jupiter). The data also reveal other solid materials that could be minerals or complex carbon-bearing organic molecules. A study in progress using large ground-based telescopes to acquire infrared spectroscopic data, and laboratory results on the optical properties of complex organic matter, seeks to identify the non-icy materials on several satellites of Saturn, Uranus, and Neptune. The work on the satellites of Saturn is in part preparatory to the Cassini spacecraft investigation of the Saturn system, which will begin in 2004 and extend for four years.

  8. Tracing the origin of the oxygen-consuming organic matter in the hypoxic zone in a large eutrophic estuary: the lower reach of the Pearl River Estuary, China

    NASA Astrophysics Data System (ADS)

    Su, Jianzhong; Dai, Minhan; He, Biyan; Wang, Lifang; Gan, Jianping; Guo, Xianghui; Zhao, Huade; Yu, Fengling

    2017-09-01

    We assess the relative contributions of different sources of organic matter, marine vs. terrestrial, to oxygen consumption in an emerging hypoxic zone in the lower Pearl River Estuary (PRE), a large eutrophic estuary located in Southern China. Our cruise, conducted in July 2014, consisted of two legs before and after the passing of Typhoon Rammasun, which completely de-stratified the water column. The stratification recovered rapidly, within 1 day after the typhoon. We observed algal blooms in the upper layer of the water column and hypoxia underneath in bottom water during both legs. Repeat sampling at the initial hypoxic station showed severe oxygen depletion down to 30 µmol kg-1 before the typhoon and a clear drawdown of dissolved oxygen after the typhoon. Based on a three endmember mixing model and the mass balance of dissolved inorganic carbon and its isotopic composition, the δ13C of organic carbon remineralized in the hypoxic zone was -23.2 ± 1.1 ‰. We estimated that 65 ± 16 % of the oxygen-consuming organic matter was derived from marine sources, and the rest (35 ± 16 %) was derived from the continent. In contrast to a recently studied hypoxic zone in the East China Sea off the Changjiang Estuary where marine organic matter dominated oxygen consumption, here terrestrial organic matter significantly contributed to the formation and maintenance of hypoxia. How varying amounts of these organic matter sources drive oxygen consumption has important implications for better understanding hypoxia and its mitigation in bottom waters.

  9. Shallow Remineralization in the Sargasso Sea Estimated from Seasonal Variations in Oxygen and Dissolved Inorganic Carbon

    NASA Technical Reports Server (NTRS)

    Ono, S.; Ennyu, A.; Najjar, R. G.; Bates, N.

    1998-01-01

    A diagnostic model of the mean annual cycles of dissolved inorganic carbon (DIC) and oxygen below the mixed layer at the Bermuda Atlantic Time-series Study (BATS) site is presented and used to estimate organic carbon remineralization in the seasonal thermocline. The model includes lateral and vertical advection as well as vertical, diffusion. Very good agreement is found for the remineralization estimates based on oxygen and DIC. Net remineralization averaged from mid-spring to early fall is found to be a maximum between 120 and 140 in. Remineralization integrated between 100 (the compensation depth) and 250 m during this period is estimated to be about 1 mol C/sq m. This flux is consistent with independent estimates of the loss of particulate and dissolved organic carbon.

  10. An original data treatment for infrared spectra of organic matter, application to extracted soil organic matter

    NASA Astrophysics Data System (ADS)

    Gomes Rossin, Bruna; Redon, Roland; Raynaud, Michel; Nascimento, Nadia Regina; Mounier, Stéphane

    2017-04-01

    Infrared spectra of extracted organic matter are easy and rapid to do, but generally hard to interpreted over the presence or not of certain organic functions. Indeed, the organic matter is a complex mixture of molecules often having absorption overlapping and it is also difficult to have a well calibrated or normalised spectra due to the difficulty to have a well known solid content or homogeneity for a sample (Monakhova et al. 2015, Tadini et al. 2015, Bardy et al. 2008). In this work, the IRTF (InfraRed Fourier Transform) spectra were treated by an original algorithm developed to obtain the principal components of the IRTF spectra and their contributions for each sample. This bilinear decomposition used a PCA initialisation and the principal components were estimated from vectors calculated by PCA and linearly combined to provide non-negative signals minimizing a criterion based on cross-correlation. Hence, using this decomposition, it is possible to define IRTF signal of organic matter fractions like humic acid or fulvic acid depending on their origin like surface of depth of soil profiles. The method was used on a set of sample from Upper Negro River Basin (Amazon, Brazil) (Bueno,2009), where three soils sequences from surface to two meter depth containing 10 slices each. The sequences were sampled on a podzol well drain, a hydromorphic podzol and a cryptopodzol. From the IRTF data five representative component spectra were defined for all the extracted organic matter , and using other chemical composition information, a mechanism of organic matter fate is proposed to explain the observed results. Bardy, M., E. Fritsch, S. Derenne, T. Allard, N. R. do Nascimento, and G. T. Bueno. 2008. "Micromorphology and Spectroscopic Characteristics of Organic Matter in Waterlogged Podzols of the Upper Amazon Basin." Geoderma 145 (3-4): 222-30. Bueno, G.T. Appauvrissement et podzolisation des latérites du baissin du Rio Negro et gênese dês Podzols dans le haut bassin

  11. Dispersed and accumulated organic matter in fractures: Primary migration evidences

    SciTech Connect

    Lopez, L.; Pasquali, J. )

    1993-02-01

    Concentrated organic matter accumulated in fractures (organic rich fraction) and dispersed organic matter (total rock) of the source rocks of the Querecual and San Antonio formations of the Eastern Venezuelan basin were studied. The distribution of organic matter was studied in polished sections. Sample were analyzed for total organic carbon (Ct), total bitumen and the n-alkane fraction within the bitumen. Dispersed and concentrated organic matter were analyzed separately, and the pertinent differences were established. Concentrated organic matter, probably accumulated to due migration of dispersed organic matter into fractures, or low pressure zones is deficient in n-alkanes of low molecular weight. This fact is interpreted as the result of the migration process that allows the preferential movement of light components of low polarity. It seems that the products of kerogen maturation start their transformation to materials more like crude oils from their primary migration, stage that is to say, within the source rock.

  12. Soil organic matter mineralization in frozen soils

    NASA Astrophysics Data System (ADS)

    Harrysson Drotz, S.; Sparrman, T.; Schleucher, J.; Nilsson, M.; Öquist, M. G.

    2009-12-01

    Boreal forest soils are frozen for a large part of the year and soil organic matter mineralization during this period has been shown to significantly influence the C balance of boreal forest ecosystems. Mineralization proceeds through heterotrophic microbial activity, but the understanding of the environmental controls regulating soil organic matter mineralization under frozen conditions is poor. Through a series of investigations we have addressed this issue in order to elucidate to what extent a range of environmental factors control mineralization processes in frozen soils and also the microbial communities potential to oxidize organic substrates and grow under such conditions. The unfrozen water content in the frozen soils was shown to be an integral control on the temperature response of biogenic CO2 production across the freezing point of bulk soil water. We found that osmotic potential was an important contributor to the total water potential and, hence, the unfrozen water content of frozen soil. From being low and negligible in an unfrozen soil, the osmotic potential was found to contribute up to 70% of the total water potential in frozen soil, greatly influencing the volume of liquid water. The specific factors of how soil organic matter composition affected the unfrozen water content and CO2 production of frozen soil were studied by CP-MAS NMR. We concluded that abundance of aromatics and recalcitrant compounds showed a significant positive correlation with unfrozen water content and these were also the major soil organic fractions that similarly correlated with the microbial CO2 production of the frozen soils. Thus, the hierarchy of environmental factors controlling SOM mineralization changes as soils freeze and environmental controls elucidated from studies of unfrozen systems can not be added on frozen conditions. We have also investigated the potential activity of soil microbial communities under frozen conditions in order to elucidate temperature

  13. Stability of Ferrihydrite and Organic Matter in Ferrihydrite-Organic Matter Associations

    NASA Astrophysics Data System (ADS)

    Eusterhues, K.; Totsche, K. U.

    2015-12-01

    Iron oxides can bind particularly large amounts of organic matter (OM) and seem to be an important control on OM storage in many soils. To better understand the interactions between Fe oxides and OM, we produced ferrihydrite-OM associations by adsorption and coprecipitation in laboratory experiments. Because ferrihydrites are often formed in OM-rich solutions, we assume that coprecipitation is a common process in nature. In contrast to adsorption on pre-existing ferrihydrite surfaces, coprecipitation involves adsorption, occlusion (physical entrapment of OM), formation of Fe-OM complexes, and poisoning of ferrihydrite growth. The reactivity of coprecipitates may therefore differ from ferriydrites with adsorbed OM. Incubation experiments with an inoculum extracted from a Podzol forest-floor were carried out to quantify the mineralization of the adsorbed and coprecipitated organic matter. These experiments showed that the association with ferrihydrite stabilized the associated organic matter, but that differences in the degradability of adsorbed and coprecipitated organic matter were small. We therefore conclude that coprecipitation does not lead to a significant formation of microbial inaccessible organic matter domains. Microbial reduction experiments were performed using Geobacter bremensis. We observed that increasing amounts of associated OM led to decreasing initial reaction rates and a decreasing degree of dissolution. Reduction of coprecipitated ferrihydrites was faster than reduction of ferrihydrites with adsorbed OM. Our data demonstrate that the association with ferrihydrite can effectively stabilize labile polysaccharides. Vice versa, these polysaccharides may protect ferrihydrite from reduction by Geobacter-like bacteria. However, a challenge for future studies will be to link formation and degradation of mineral-organic associations to natural porous systems, that is, to the complex interplay of mass transport and microbial distribution in the

  14. Spectral fingerprinting of soil organic matter composition

    NASA Astrophysics Data System (ADS)

    Cecillon, L.; Certini, G.; Lange, H.; Forte, C.; Strand, L. T.

    2009-04-01

    The determination of soil organic matter (SOM) composition relies on a variety of chemical and physical methods, most of them time consuming and expensive. Hitherto, such methodological limitations have hampered the use of detailed SOM composition in process-based models of SOM dynamics, which usually include only three poorly defined carbon pools. Here we show a novel approach merging both near and mid infrared spectroscopy into a single fingerprint for an expeditious prediction of the molecular composition of organic materials in soil, as inferred from a molecular mixing model (MMM) based on 13C nuclear magnetic resonance (NMR), which describes SOM as a mixture of common biologically derived polymers. Infrared and solid-state 13C NMR spectroscopic measurements were performed on a set of mineral and organic soil samples presenting a wide range of organic carbon content (2 to 500 g kg-1), collected in a boreal heathland (Storgama, Norway). The implementation of the MMM using 13C NMR spectra allowed the calculation of five main biochemical components (carbohydrate, protein, lignin, lipids and black carbon) for each sample. Partial least squares regression models were developed for the five biopolymers using outer product analysis of near and mid infrared spectra (Infrared-OPA). All models reached ratios of performance to deviation (RPD) above 2 and specific infrared wavenumbers associated to each biochemical component were identified. Our results demonstrate that Infrared-OPA provides a robust and cost-effective fingerprint of SOM composition that could be useful for the routine assessment of soil carbon pools.

  15. Relating dissolved organic matter fluorescence to functional properties

    NASA Astrophysics Data System (ADS)

    Tipping, E.; Baker, A.; Thacker, S.; Gondar, D.

    2007-12-01

    The fluorescence excitation emission matrix properties of dissolved organic matter from three rivers and one lake in NW England are analysed. Sites are sampled in duplicate and for some sites seasonally to cover variations in dissolved organic matter composition, river flow, and carbon isotopic (13C, 14C) variability. Results are compared to the functional properties of the dissolved organic matter, the functional assays provide quantitative information on light absorption, fluorescence, photochemical fading, pH buffering, copper binding, benzo[a]pyrene binding, hydrophilicity and adsorption to alumina. Fluorescence characterization of the dissolved organic matter samples demonstrates that peak C fluorescence emission wavelength, the ratio of peak T to peak C fluorescence intensity, and the fluorescence : absorbance ratio best differentiate different dissolved organic matter samples. These parameters correspond to dissolved organic matter aromaticity, the ratio of labile to recalcitrant organic matter, and dissolved organic matter molecular weight. Peak C fluorescence emission wavelength, the ratio of peak T to peak C fluorescence intensity, and the fluorescence : absorbance ratio fluorescence parameters also have strong correlations with several of the functional assays, in particular the extinction coefficients, benzo(a)pyrene binding and alumina adsorption, and buffering capacity. In many cases, regression equations with a correlation coefficient >0.9 are obtained, suggesting that dissolved organic matter functional character can be predicted from DOM fluorescence properties. For one site, the relationship between dissolved organic matter source, fluorescence, function and carbon isotopic composition is discussed.

  16. Lability of secondary organic particulate matter

    SciTech Connect

    Liu, Pengfei; Li, Yong Jie; Wang, Yan; Gilles, Mary K.; Zaveri, Rahul A.; Bertram, Allan K.; Martin, Scot T.

    2016-10-24

    We report the energy flows in Earth’s natural and modified climate systems are strongly influenced by the concentrations of atmospheric particulate matter (PM). For predictions of concentration, equilibrium partitioning of semivolatile organic compounds (SVOCs) between organic PM and the surrounding vapor has widely been assumed, yet recent observations show that organic PM can be semisolid or solid for some atmospheric conditions, possibly suggesting that SVOC uptake and release can be slow enough that equilibrium does not prevail on timescales relevant to atmospheric processes. Herein, in a series of laboratory experiments, the mass labilities of films of secondary organic material representative of similar atmospheric organic PM were directly determined by quartz crystal microbalance measurements of evaporation rates and vapor mass concentrations. There were strong differences between films representative of anthropogenic compared with biogenic sources. For films representing anthropogenic PM, evaporation rates and vapor mass concentrations increased above a threshold relative humidity (RH) between 20% and 30%, indicating rapid partitioning above a transition RH but not below. Below the threshold, the characteristic time for equilibration is estimated as up to 1 wk for a typically sized particle. In contrast, for films representing biogenic PM, no RH threshold was observed, suggesting equilibrium partitioning is rapidly obtained for all RHs. The effective diffusion rate Dorg for the biogenic case is at least 103 times greater than that of the anthropogenic case. In conclusion, these differences should be accounted for in the interpretation of laboratory data as well as in modeling of organic PM in Earth’s atmosphere.

  17. Lability of secondary organic particulate matter

    DOE PAGES

    Liu, Pengfei; Li, Yong Jie; Wang, Yan; ...

    2016-10-24

    We report the energy flows in Earth’s natural and modified climate systems are strongly influenced by the concentrations of atmospheric particulate matter (PM). For predictions of concentration, equilibrium partitioning of semivolatile organic compounds (SVOCs) between organic PM and the surrounding vapor has widely been assumed, yet recent observations show that organic PM can be semisolid or solid for some atmospheric conditions, possibly suggesting that SVOC uptake and release can be slow enough that equilibrium does not prevail on timescales relevant to atmospheric processes. Herein, in a series of laboratory experiments, the mass labilities of films of secondary organic material representativemore » of similar atmospheric organic PM were directly determined by quartz crystal microbalance measurements of evaporation rates and vapor mass concentrations. There were strong differences between films representative of anthropogenic compared with biogenic sources. For films representing anthropogenic PM, evaporation rates and vapor mass concentrations increased above a threshold relative humidity (RH) between 20% and 30%, indicating rapid partitioning above a transition RH but not below. Below the threshold, the characteristic time for equilibration is estimated as up to 1 wk for a typically sized particle. In contrast, for films representing biogenic PM, no RH threshold was observed, suggesting equilibrium partitioning is rapidly obtained for all RHs. The effective diffusion rate Dorg for the biogenic case is at least 103 times greater than that of the anthropogenic case. In conclusion, these differences should be accounted for in the interpretation of laboratory data as well as in modeling of organic PM in Earth’s atmosphere.« less

  18. Short-Term Dynamics of North Sea Bacterioplankton-Dissolved Organic Matter Coherence on Molecular Level

    PubMed Central

    Lucas, Judith; Koester, Irina; Wichels, Antje; Niggemann, Jutta; Dittmar, Thorsten; Callies, Ulrich; Wiltshire, Karen H.; Gerdts, Gunnar

    2016-01-01

    Remineralization and transformation of dissolved organic matter (DOM) by marine microbes shape the DOM composition and thus, have large impact on global carbon and nutrient cycling. However, information on bacterioplankton-DOM interactions on a molecular level is limited. We examined the variation of bacterial community composition (BCC) at Helgoland Roads (North Sea) in relation to variation of molecular DOM composition and various environmental parameters on short-time scales. Surface water samples were taken daily over a period of 20 days. Bacterial community and molecular DOM composition were assessed via 16S rRNA gene tag sequencing and ultrahigh resolution Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR-MS), respectively. Environmental conditions were driven by a coastal water influx during the first half of the sampling period and the onset of a summer phytoplankton bloom toward the end of the sampling period. These phenomena led to a distinct grouping of bacterial communities and DOM composition which was particularly influenced by total dissolved nitrogen (TDN) concentration, temperature, and salinity, as revealed by distance-based linear regression analyses. Bacterioplankton-DOM interaction was demonstrated in strong correlations between specific bacterial taxa and particular DOM molecules, thus, suggesting potential specialization on particular substrates. We propose that a combination of high resolution techniques, as used in this study, may provide substantial information on substrate generalists and specialists and thus, contribute to prediction of BCC variation. PMID:27014241

  19. Starting life requires more than organic matter

    NASA Astrophysics Data System (ADS)

    Pascal, R.

    2015-10-01

    A physicochemical approach is proposed to study requirements for the origin of life in agreement with developments made in Systems Chemistry for several decades. Emphasis is made on the occurrence of environments generating abiotic chemical systems making more of themselves under far from equilibrium conditions. It follows that the presence of organic matter is only one of the components needed for the process of chemical evolution leading to life. The presence of an energy source with a potential equivalent to that of visible light is needed to render the activation step kinetically irreversible and the reproduction loop a unidirectional flux of reactants. This condition is required in order that reproduction follows an exponential law and dynamic kinetic stability governs the evolution toward the selection of improved variants. According to these views, no fundamental difference can be found between the chemical and biological stages of evolution.

  20. Hydrological and biogeochemical Controls on Absorption and Fluorescence of Dissolved Organic Matter in the Northern South China Sea

    NASA Astrophysics Data System (ADS)

    Guo, Weidong; Wang, Chao; Li, Yan; Li, Yizhen; Song, Guodong; Wang, Lei; Cheng, Yuanyue

    2016-04-01

    Absorption and fluorescence of dissolved organic matter (DOM) were investigated in the northern South China Sea (SCS) and adjacent Kuroshio section of the West Philippine Sea (WPS). Two humic-like (C1, C2) and three protein-like (C3-C5) fluorescent components were identified using parallel factor analysis (PARAFAC). chromophoric DOM (CDOM) and fluorescent DOM (FDOM) in the northern SCS showed similar distribution patterns to the adjacent Kuroshio section and global open ocean, yet exhibited higher values in the whole water column. An isopycnal mixing model was adopted to quantify the difference in CDOM and FDOM in the euphotic zone between the northern SCS and WPS. Results showed that CDOM and humic-like FDOM were mainly modulated by Kuroshio intrusion, while protein-like FDOM were more affected by biological activities. At mid-depth, significant linear relationships between a350, C1, C2 and apparent oxygen utilization (AOU) suggested that CDOM and humic-like FDOM were produced in situ coupled to remineralization of biogenic sinking particle. Excess humic-like FDOM in the intermediate water of northern SCS were determined and more proportion of high molecular weight organic carbon was exported to the open ocean interior. In addition, regional distribution patterns of CDOM and FDOM were also tuned by mesoscale processes in the northern SCS. Different CDOM and FDOM components in the euphotic zone have apparently different responses for changes of biological activity and vertical mixing driven by eddies. Moreover, cold eddy could capture more sinking particles and finally increase the accumulation of bio-refractory CDOM and humic-like FDOM in the dark ocean. Finally, we demonstrated that the ratio of two humic-like FDOM (C1:C2, or peak C:M) may be a good indicator of water mixing, evolution of mesoscale eddies, photochemistry in the upper water and remineralization in the deeper layer.

  1. Fluorides and non-fluoride remineralization systems.

    PubMed

    Amaechi, Bennett T; van Loveren, Cor

    2013-01-01

    Caries develops when the equilibrium between de- and remineralization is unbalanced favoring demineralization. De- and remineralization occur depending on the degree of saturation of the interstitial fluids with respect to the tooth mineral. This equilibrium is positively influenced when fluoride, calcium and phosphate ions are added favoring remineralization. In addition, when fluoride is present, it will be incorporated into the newly formed mineral which is then less soluble. Toothpastes may contain fluoride and calcium ions separately or together in various compounds (remineralization systems) and may therefore reduce demineralization and promote remineralization. Formulating all these compounds in one paste may be challenging due to possible premature calcium-fluoride interactions and the low solubility of CaF2. There is a large amount of clinical evidence supporting the potent caries preventive effect of fluoride toothpastes indisputably. The amount of clinical evidence of the effectiveness of the other remineralization systems is far less convincing. Evidence is lacking for head to head comparisons of the various remineralization systems. Copyright © 2013 S. Karger AG, Basel.

  2. Remineralization of caries lesions extending into dentin.

    PubMed

    ten Cate, J M

    2001-05-01

    Remineralization is one aspect of the overall process of tooth decay. However, it is primarily studied in shallow lesions. The aim of this study was to explore whether caries lesions in enamel and extending into the dentin can be remineralized. A single-section model was developed for the longitudinal and non-destructive monitoring of changes in enamel and dentin. Lesions at least 200 microm into dentin were formed in undersaturated acetate buffers. Next, the lesions were divided into groups (three treatment and one control) and remineralized. The treatments were: weekly immersion in 1,000 ppm fluoride, single treatment with methanehydroxybisphosphonate, and a constant level of 1 ppm fluoride. De- and remineralization was assessed by transverse microradiography. Remineralization was observed in enamel, but also in dentin, indicating that, deep into dentin, the pores become supersaturated to apatite formation. Treatments affected remineralization only in the outer part of enamel. Both findings are explained by a relatively fast diffusion of mineral ions, with precipitation being rate-limiting. The results suggest that dentin remineralization, underneath enamel, can be achieved and could possibly be used in clinical treatment strategies.

  3. Remineralization rates, recycling, and storage of carbon in Amazon shelf sediments

    NASA Astrophysics Data System (ADS)

    Aller, R. C.; Blair, N. E.; Xia, Q.; Rude, P. D.

    1996-04-01

    Diagenetic reactions and redox properties of Amazon shelf sediments are characterized by extensive vertical and lateral regions of Fe and Mn cycling. This is in contrast to many temperate estuarine and shelf deposits where S can dominate early diagenesis, but may be typical of wet-tropical regions draining highly weathered terrain with energetic coastlines. Although the major pathways of C org remineralization in surfical sediments apparently differ from previously studied areas, the absolute magnitude and relative importance of benthic decomposition on the Amazon shelf are comparable to many shallow water regions of equivalent depth range (10-40 m). Net ΣC0 2 production over the upper ˜1-2 m of deposits is >50 mmol m -2 d -1 and has a predominantly planktonic isotopic composition (δ 13C˜-21to-22%‰), indicating that marine organic matter largely drives diagenesic reactions and that >20% of average water-column primary production is metabolized on the seafloor. The ΣCO 2 production rates in the upper 0-5 cm of sediment tend to increase slightly alongshelf away from the turbid river mouth, but are relatively uniform within cross-shelf transects any given season and independent of net sedimentation rate. Near uniformity in surface decomposition rates, despite substantial offshore increases in water-column productivity and net accumulation at the delta front, implies rapid cross-shelf particle exchange by estuarine circulation and tidal currents. Build-up patterns of pore-water ΣCO 2 indicate in some cases that the upper ˜20 cm was deposited only a few days prior to core collection. Benthic ΣC0 2 production is highest during periods of low or falling river flow, but no dramatic seasonality occurs. O 2 penetrates ˜2-4 mm into sediments and diffusive OZ uptake averages ˜13 mmol m -2 d -1 annually. Anaerobic metabolism accounts for >75% of sedimentary remineralization, but C/S burial ratios are usually >6 (average world shelf |2.8). Seasonal patterns in

  4. Tracing the origin of the oxygen-consuming organic matter in the hypoxic zone in the lower Pearl River estuary and the adjacent coastal water

    NASA Astrophysics Data System (ADS)

    Su, J.; Dai, M.; He, B.; Wang, L.; Gan, J.

    2016-12-01

    Hypoxia is an environmental issue of increasing global concerns. Oxygen consumption during the degradation of organic matter is usually regarded as the ultimate cause of hypoxia. Many studies have examined the source partitioning of organic matter existing in the water column or surface sediment through C/N ratios, δ13C, δ15N and/or other biomarkers. However, it remained difficult to quantify the carbon sources directly contributed to the oxygen-consuming organic matter. In order to assess the relative contributions of differently sourced organic matter, marine vs. terrestrial, to oxygen consumption, we conducted a survey in the Pearl River estuary (PRE) and the adjacent coastal water in July 2014. The cruise was divided into 2 legs with a passing through of a typhoon in between, which destructed the stratification of the water column. Stratification recovered rather quickly within one day after the typhoon passage. Indeed, we observed in both legs, algal blooms in the surface water with hypoxias underneath in the bottom water. The repeated samplings at a station in the initial hypoxic zone showed severe oxygen depletion before the typhoon and gradual recovery of oxygen after the typhoon in the hypoxia. Based on a three end-member mixing model and the mass balance of DIC and its isotopic composition, we derived the δ13C value of the remineralized organic carbon of -21.8±0.6‰ in the hypoxic zone. We then estimated that 73±10% oxygen-consuming organic matter was marine sourced and the rest of 27±10% was from terrestrially sourced. Therefore, we concluded that marine organic matter, formed by eutrophication-stimulated primary production, dominated the oxygen consumption in the hypoxic zones of the PRE and the adjacent coastal water. However, the terrestrially sourced organic matter could also play a role in the formation and maintenance of hypoxia.

  5. Soil Organic Matter and Management of Plant-Parasitic Nematodes

    PubMed Central

    Widmer, T. L.; Mitkowski, N. A.; Abawi, G. S.

    2002-01-01

    Organic matter and its replenishment has become a major component of soil health management programs. Many of the soil's physical, chemical, and biological properties are a function of organic matter content and quality. Adding organic matter to soil influences diverse and important biological activities. The diversity and number of free-living and plant-parasitic nematodes are altered by rotational crops, cover crops, green manures, and other sources of organic matter. Soil management programs should include the use of the proper organic materials to improve soil chemical, physical, and biological parameters and to suppress plant-parasitic nematodes and soilborne pathogens. It is critical to monitor the effects of organic matter additions on activities of major and minor plant-parasitic nematodes in the production system. This paper presents a general review of information in the literature on the effects of crop rotation, cover crops, and green manures on nematodes and their damage to economic crops. PMID:19265946

  6. Sensitivity of soil organic matter in anthropogenically disturbed organic soils

    NASA Astrophysics Data System (ADS)

    Säurich, Annelie; Tiemeyer, Bärbel; Bechtold, Michel; Don, Axel; Freibauer, Annette

    2016-04-01

    Drained peatlands are hotspots of carbon dioxide (CO2) emissions from agriculture. However, the variability of CO2 emissions increases with disturbance, and little is known on the soil properties causing differences between seemingly similar sites. Furthermore the driving factors for carbon cycling are well studied for both genuine peat and mineral soil, but there is a lack of information concerning soils at the boundary between organic and mineral soils. Examples for such soils are both soils naturally relatively high in soil organic matter (SOM) such as Humic Gleysols and former peat soils with a relative low SOM content due to intensive mineralization or mixing with underlying or applied mineral soil. The study aims to identify drivers for the sensitivity of soil organic matter and therefore for respiration rates of anthropogenically disturbed organic soils, especially those near the boundary to mineral soils. Furthermore, we would like to answer the question whether there are any critical thresholds of soil organic carbon (SOC) concentrations beyond which the carbon-specific respiration rates change. The German agricultural soil inventory samples all agricultural soils in Germany in an 8x8 km² grid following standardized protocols. From this data and sample base, we selected 120 different soil samples from more than 80 sites. As reference sites, three anthropogenically undisturbed peatlands were sampled as well. We chose samples from the soil inventory a) 72 g kg-1 SOC and b) representing the whole range of basic soil properties: SOC (72 to 568 g kg-1), total nitrogen (2 to 29 g kg-1), C-N-ratio (10 to 80) bulk density (0.06 to 1.41 g/cm³), pH (2.5 to 7.4), sand (0 to 95 %) and clay (2 to 70 %) content (only determined for samples with less than 190 g kg-1 SOC) as well as the botanical origin of the peat (if determinable). Additionally, iron oxides were determined for all samples. All samples were sieved (2 mm) and incubated at standardized water content and

  7. Positive priming of terrestrially derived dissolved organic matter in a freshwater microcosm system

    NASA Astrophysics Data System (ADS)

    Bianchi, Thomas S.; Thornton, Daniel C. O.; Yvon-Lewis, Shari A.; King, Gary M.; Eglinton, Timothy I.; Shields, Michael R.; Ward, Nicholas D.; Curtis, Jason

    2015-07-01

    The role of priming processes in the remineralization of terrestrially derived dissolved organic carbon (TDOC) in aquatic systems has been overlooked. We provide evidence for TDOC priming using a lab-based microcosm experiment in which TDOC was primed by the addition of 13C-labeled algal dissolved organic carbon (ADOC) or a 13C-labeled disaccharide (trehalose). The rate of TDOC remineralization to carbon dioxide (CO2) occurred 4.1 ± 0.9 and 1.5 ± 0.3 times more rapidly with the addition of trehalose and ADOC, respectively, relative to experiments with TDOC as the sole carbon source over the course of a 301 h incubation period. Results from these controlled experiments provide fundamental evidence for the occurrence of priming of TDOC by ADOC and a simple disaccharide. We suggest that priming effects on TDOC should be considered in carbon budgets for large-river deltas, estuaries, lakes, hydroelectric reservoirs, and continental shelves.

  8. Using ammonium pore water profiles to assess stoichiometry of deep remineralization processes in methanogenic continental margin sediments

    NASA Astrophysics Data System (ADS)

    Burdige, David J.; Komada, Tomoko

    2013-05-01

    many continental margin sediments, a deep reaction zone exists which is separated from remineralization processes near the sediment surface. Here, methane diffuses upward to a depth where it is oxidized by downwardly diffusing sulfate. However, the methane sources that drive this anaerobic oxidation of methane (AOM) in the sulfate-methane transition zone (SMT) may vary among sites. In particular, these sources can be thought of as either (i) "internal" sources from in situ methanogenesis (regardless of where it occurs in the sediment column) that are ultimately coupled to organic matter deposition and burial, or (ii) "external" sources such as hydrocarbon reservoirs derived from ancient source rocks, or deeply buried gas hydrates, both of which are decoupled from contemporaneous organic carbon deposition at the sediment surface. Using a modeling approach, we examine the relationship between different methane sources and pore water sulfate, methane, dissolved inorganic carbon (DIC), and ammonium profiles. We show that pore water ammonium profiles through the SMT represent an independent "tracer" of remineralization processes occurring in deep sediments that complement information obtained from profiles of solutes directly associated with AOM and carbonate precipitation, i.e., DIC, methane, and sulfate. Pore water DIC profiles also show an inflection point in the SMT based on the type of deep methane source and the presence/absence of accompanying upward DIC fluxes. With these results, we present a conceptual framework which illustrates how shallow pore water profiles from continental margin settings can be used to obtain important information about remineralization processes and methane sources in deep sediments.

  9. Aerobic methane production from organic matter

    NASA Astrophysics Data System (ADS)

    Vigano, I.

    2010-01-01

    Methane, together with H2O, CO2 and N2O, is an important greenhouse gas in th e Earth’s atmosphere playing a key role in the radiative budget. It has be en known for decades that the production of the reduced compound CH4 is possible almost exclusively in anoxic environments per opera of one of the most importan t class of microorganisms which form the Archaea reign. Methane can be produced also from incomplete combustion of organic material. The generation of CH4 in an oxygenated environment under near-ambient conditions is a new discovery made in 2006 by Keppler et. al where surprisingly they measured emissions of this green house gas from plants incubated in chambers with air containing 20% of oxygen. A lthough the estimates on a global scale are still object of an intensive debate, the results presented in this thesis clearly show the existence of methane prod uction under oxic conditions for non living plant material. Temperature and UV l ight are key factors that drive the generation of CH4 from plant matter in a wel l oxygenated environment.

  10. The evolution of organic matter in space.

    PubMed

    Ehrenfreund, Pascale; Spaans, Marco; Holm, Nils G

    2011-02-13

    Carbon, and molecules made from it, have already been observed in the early Universe. During cosmic time, many galaxies undergo intense periods of star formation, during which heavy elements like carbon, oxygen, nitrogen, silicon and iron are produced. Also, many complex molecules, from carbon monoxide to polycyclic aromatic hydrocarbons, are detected in these systems, like they are for our own Galaxy. Interstellar molecular clouds and circumstellar envelopes are factories of complex molecular synthesis. A surprisingly high number of molecules that are used in contemporary biochemistry on the Earth are found in the interstellar medium, planetary atmospheres and surfaces, comets, asteroids and meteorites and interplanetary dust particles. Large quantities of extra-terrestrial material were delivered via comets and asteroids to young planetary surfaces during the heavy bombardment phase. Monitoring the formation and evolution of organic matter in space is crucial in order to determine the prebiotic reservoirs available to the early Earth. It is equally important to reveal abiotic routes to prebiotic molecules in the Earth environments. Materials from both carbon sources (extra-terrestrial and endogenous) may have contributed to biochemical pathways on the Earth leading to life's origin. The research avenues discussed also guide us to extend our knowledge to other habitable worlds.

  11. Organic Matter Sulfurization in the Water Column and Its Effect on Sedimentary Processes

    NASA Astrophysics Data System (ADS)

    Raven, M. R.; Sessions, A. L.; Adkins, J. F.; Thunell, R.

    2016-02-01

    An essential characteristic of marine organic matter (OM) is its lability, which is typically taken to mean its susceptibility to remineralization by microorganisms. OM that is more highly condensed or polymerized is less available for heterotrophs and is therefore associated with lower rates of microbial metabolisms and inorganic carbon release than fresh, lower molecular weight material. Accordingly, understanding the mechanisms driving the transformation of OM into recalcitrant `proto-kerogen' will greatly improve our understanding of sedimentary metabolic rates and carbon burial. One important set of reactions driving proto-kerogen formation in O2-limited environments are abiotic reactions between sulfide and/or polysulfides and functionalized OM. We investigate this process in sinking particles from the modern Cariaco basin. We find evidence for rapid sulfurization in the water column based on the concentrations and sulfur-isotopic compositions of organic fractions and individual organosulfur compounds. More extensive sulfurization in Cariaco Basin is associated with high OM export from the surface ocean, low terrestrial inputs, and high concentrations of both elemental S and the dominant non-polar organosulfur compound, C20 thiophene. Depending on the frequency of high OM export events, we estimate that water column sulfurization delivers roughly half of the total organic S present at 5 cm depth in underlying sediments. We compare these data to results from Santa Barbara Basin and find that similar processes may be responsible for low rates of heterotrophy in this environment. OM sulfurization during sedimentation and very early diagenesis will have many implications for biogeochemical cycles in sediments during later diagenesis and burial.

  12. Sources, behaviors and degradation of dissolved organic matter in the East China Sea

    NASA Astrophysics Data System (ADS)

    Chen, Yan; Yang, Gui-Peng; Liu, Li; Zhang, Peng-Yan; Leng, Wei-Song

    2016-03-01

    Concentrations of dissolved organic carbon (DOC), dissolved inorganic nitrogen (DIN), dissolved organic nitrogen (DON) and its major compound classes-total hydrolysable amino acids (THAA) were measured at 4 cross-shelf transects of the East China Sea in July 2011. Surface concentrations of DOC, DIN, DON and THAA at the nearshore stations were mostly in excess of those found at the offshore sites, indicating either substantial autochthonous production or allochthonous inputs from the Changjiang River. The vertical distributions of DOC, DON and THAA showed similar trends with higher values in the surface layer, whereas the elevated concentrations of DIN were observed in the bottom layer. Major constituents of THAA presented in the study area were glycine, serine, alanine, glutamic acid, aspartic acid and valine. The mole percentages of neutral amino acids increased from surface water to bottom water, whereas acidic and hydroxy amino acids decreased with the water depth. Concentrations of DOC and THAA were negatively correlated to the ΔDIN values (the difference between the real concentration and theoretical concentration), respectively, indicating the coupling relation between dissolved organic matter (DOM) remineralization and nutrient regeneration in the water column. The C/N ratios in the water column exhibited different characteristics with elevated values appearing in the surface and bottom layers. Box and whisker plots showed that both degradation index (DI) values and THAA yields displayed a decreasing trend from the surface layer to the bottom layer, implying increasing degradation with the water depth. Our data revealed that glycine and alanine increased in relative abundance with decreasing DI, while tyrosine, valine, phenylalanine and isoleucine increased with increasing DI.

  13. Mapping forest soil organic matter on New Jersey's coastal plain

    Treesearch

    Brian J. Clough; Edwin J. Green; Richard B. Lathrop

    2012-01-01

    Managing forest soil organic matter (SOM) stocks is a vital strategy for reducing the impact of anthropogenic carbon dioxide emissions. However, the SOM pool is highly variable, and developing accurate estimates to guide management decisions has remained a difficult task. We present the results of a spatial model designed to map soil organic matter for all forested...

  14. Complexation of trace metals by adsorbed natural organic matter

    USGS Publications Warehouse

    Davis, J.A.

    1984-01-01

    The adsorption behavior and solution speciation of Cu(II) and Cd(II) were studied in model systems containing colloidal alumina particles and dissolved natural organic matter. At equilibrium a significant fraction of the alumina surface was covered by adsorbed organic matter. Cu(II) was partitioned primarily between the surface-bound organic matter and dissolved Cu-organic complexes in the aqueous phase. Complexation of Cu2+ with the functional groups of adsorbed organic matter was stronger than complexation with uncovered alumina surface hydroxyls. It is shown that the complexation of Cu(II) by adsorbed organic matter can be described by an apparent stability constant approximately equal to the value found for solution phase equilibria. In contrast, Cd(II) adsorption was not significantly affected by the presence of organic matter at the surface, due to weak complex formation with the organic ligands. The results demonstrate that general models of trace element partitioning in natural waters must consider the presence of adsorbed organic matter. ?? 1984.

  15. Subcritical water extraction of organic matter from sedimentary rocks.

    PubMed

    Luong, Duy; Sephton, Mark A; Watson, Jonathan S

    2015-06-16

    Subcritical water extraction of organic matter containing sedimentary rocks at 300°C and 1500 psi produces extracts comparable to conventional solvent extraction. Subcritical water extraction of previously solvent extracted samples confirms that high molecular weight organic matter (kerogen) degradation is not occurring and that only low molecular weight organic matter (free compounds) are being accessed in analogy to solvent extraction procedures. The sedimentary rocks chosen for extraction span the classic geochemical organic matter types. A type I organic matter-containing sedimentary rock produces n-alkanes and isoprenoidal hydrocarbons at 300°C and 1500 psi that indicate an algal source for the organic matter. Extraction of a rock containing type II organic matter at the same temperature and pressure produces aliphatic hydrocarbons but also aromatic compounds reflecting the increased contributions from terrestrial organic matter in this sample. A type III organic matter-containing sample produces a range of non-polar and polar compounds including polycyclic aromatic hydrocarbons and oxygenated aromatic compounds at 300°C and 1500 psi reflecting a dominantly terrestrial origin for the organic materials. Although extraction at 300°C and 1500 psi produces extracts that are comparable to solvent extraction, lower temperature steps display differences related to organic solubility. The type I organic matter produces no products below 300°C and 1500 psi, reflecting its dominantly aliphatic character, while type II and type III organic matter contribute some polar components to the lower temperature steps, reflecting the chemical heterogeneity of their organic inventory. The separation of polar and non-polar organic compounds by using different temperatures provides the potential for selective extraction that may obviate the need for subsequent preparative chromatography steps. Our results indicate that subcritical water extraction can act as a suitable

  16. Dissolved Organic Matter and Emerging Contaminants in Urban Stream Ecosystems

    NASA Astrophysics Data System (ADS)

    Kaushal, S. S.; Findlay, S.; Groffman, P.; Belt, K.; Delaney, K.; Sides, A.; Walbridge, M.; Mayer, P.

    2009-05-01

    We investigated the effects of urbanization on the sources, bioavailability and forms of natural and anthropogenic organic matter found in streams located in Maryland, U.S.A. We found that the abundance, biaoavailability, and enzymatic breakdown of dissolved organic carbon (DOC), dissolved organic nitrogen (DON), and dissolved organic phosphorus (DOP) increased in streams with increasing watershed urbanization suggesting that organic nutrients may represent a growing form of nutrient loading to coastal waters associated with land use change. Organic carbon, nitrogen, and phosphorus in urban streams were elevated several-fold compared to forest and agricultural streams. Enzymatic activities of stream microbes in organic matter decomposition were also significantly altered across watershed land use. Chemical characterization suggested that organic matter in urban streams originated from a variety of sources including terrestrial, sewage, and in-stream transformation. In addition, a characterization of emerging organic contaminants (polyaromatic cyclic hydrocarbons, organochlorine pesticides, and polybrominated diphenyl ether flame retardents), showed that organic contaminants and dissolved organic matter increase with watershed urbanization and fluctuate substantially with changing climatic conditions. Elucidating the emerging influence of urbanization on sources, transport, and in-stream transformation of organic nutrients and contaminants will be critical in unraveling the changing role of organic matter in urban degraded and restored stream ecosystems.

  17. Hierarchical structure and mechanical properties of remineralized dentin.

    PubMed

    Chen, Yi; Wang, Jianming; Sun, Jian; Mao, Caiyun; Wang, Wei; Pan, Haihua; Tang, Ruikang; Gu, Xinhua

    2014-12-01

    It is widely accepted that the mechanical properties of dentin are significantly determined by its hierarchical structure. The current correlation between the mechanical properties and the hierarchical structure was mainly established by studying altered forms of dentin, which limits the potential outcome of the research. In this study, dentins with three different hierarchical structures were obtained via two different remineralization procedures and at different remineralization stages: (1) a dentin structure with amorphous minerals incorporated into the collagen fibrils, (2) a dentin with crystallized nanominerals incorporated into the collagen fibrils, and (3) a dentin with an out-of-order mineral layer filling the collagen fibrils matrix. Nanoindentation tests were performed to investigate the mechanical behavior of the remineralized dentin slides. The results showed that the incorporation of the crystallized nanominerals into the acid-etched demineralized organic fibrils resulted in a remarkable improvement of the mechanical properties of the dentin. In contrast, for the other two structures, i.e. the amorphous minerals inside the collagen fibrils and the out-of-order mineral layer within the collagen fibrils matrix, the excellent mechanical properties of dentin could not be restored. Copyright © 2014 Elsevier Ltd. All rights reserved.

  18. Amelogenin-assisted ex vivo remineralization of human enamel: effects of supersaturation degree and fluoride concentration

    PubMed Central

    Fan, Yuwei; Nelson, James R.; Alvarez, Jason R.; Hagan, Joseph; Berrier, Allison; Xu, Xiaoming

    2011-01-01

    The formation of organized nanocrystals that resemble enamel is crucial for successful enamel remineralization. Calcium, phosphate and fluoride ions and amelogenin are important ingredients for the formation of organized hydroxyapatite (HAP) crystals in vitro. However, the effects of these remineralization agents on the enamel crystal morphology have not been thoroughly studied. The objective of this study was to investigate the effects of fluoride ions, supersaturation degree and amelogenin on the crystal morphology and organization of ex vivo remineralized human enamel. Extracted third molars were sliced thin and acid-etched to provide the enamel surface for immersion in different remineralization solutions. The crystal morphology and mineral phase of the remineralized enamel surface were analyzed by FE-SEM, ATR-FTIR and XRD. The concentration of fluoride and supersaturation degree of hydroxyapatite had significant effects on the crystal morphology and crystal organization, which varied from plate-like loose crystals to rod-like densely packed nanocrystal arrays. Densely packed arrays of fluoridated hydroxyapatite nanorods were observed under the following conditions: σ(HAP) = 10.2±2.0 with fluoride 1.5±0.5 mg/L and amelogenin 40±10 µg/mL, pH 6.8±0.4. A phase diagram summarized the conditions that form dense or loose hydroxyapatite nanocrystal structures. This study provides the basis for the development of novel dental materials for caries management. PMID:21256987

  19. Amelogenin-assisted ex vivo remineralization of human enamel: Effects of supersaturation degree and fluoride concentration.

    PubMed

    Fan, Yuwei; Nelson, James R; Alvarez, Jason R; Hagan, Joseph; Berrier, Allison; Xu, Xiaoming

    2011-05-01

    The formation of organized nanocrystals that resemble enamel is crucial for successful enamel remineralization. Calcium, phosphate and fluoride ions, and amelogenin are important ingredients for the formation of organized hydroxyapatite (HAP) crystals in vitro. However, the effects of these remineralization agents on the enamel crystal morphology have not been thoroughly studied. The objective of this study was to investigate the effects of fluoride ions, supersaturation degree and amelogenin on the crystal morphology and organization of ex vivo remineralized human enamel. Extracted third molars were sliced thin and acid-etched to provide the enamel surface for immersion in different remineralization solutions. The crystal morphology and mineral phase of the remineralized enamel surface were analyzed by field emission-scanning electron microscopy, attenuated total reflection-Fourier transformed infrared and X-ray diffraction. The concentration of fluoride and the supersaturation degree of hydroxyapatite had significant effects on the crystal morphology and crystal organization, which varied from plate-like loose crystals to rod-like densely packed nanocrystal arrays. Densely packed arrays of fluoridated hydroxyapatite nanorods were observed under the following conditions: σ(HAP)=10.2±2.0 with 1.5±0.5 mg l(-1) fluoride and 40±10 μg ml(-1) amelogenin, pH 6.8±0.4. A phase diagram summarizes the conditions that form dense or loose hydroxyapatite nanocrystal structures. This study provides the basis for the development of novel dental materials for caries management.

  20. CHARACTERIZING THE ORGANIC MATTER IN SURFACE ...

    EPA Pesticide Factsheets

    The San Juan Bay Estuary (SJBE) is located on the north coast of Puerto Rico and includes the San Juan Bay, San José Lagoon, La Torrecilla Lagoon and Piñones Lagoon, as well as the Martín Peña and the Suárez Canals. The SJBE watershed has the highest density of inhabitants and major industrial activities in Puerto Rico. As a result, the SJBE is impacted by wastewater from combined-sewer overflows, faulty sewer lines, and storm water runoff; these factors combined with trash accumulation and infilling of the Martín Peña canal, contribute to decreased tidal exchange and reduced flushing in the estuary. To quantify the impact of the obstruction of the Martín Peña canal on anthropogenic nutrient distribution in the SJBE, over 200 sediment grab samples were collected throughout the estuary in 2015. The samples were analyzed for carbonate content, organic matter, grain size, bulk density, percent phosphorus, percent nitrogen (%N), and stable isotopes (δ15N and δ13C). The %N values were highest in the surface sediments from the western portion of the Martín Peña canal, where %N was >0.86%. In contrast, %N from the adjacent San José lagoon averaged <0.2%. Grain size distributions across the SJBE were consistent with low flushing in the inner portions of the SJBE. While the Martín Peña canal remains phosphorus limited, N:P ratios suggest the San Juna Bay and San José Lagoon have undergone major ecological shifts in the past two decades. Our

  1. CHARACTERIZING THE ORGANIC MATTER IN SURFACE ...

    EPA Pesticide Factsheets

    The San Juan Bay Estuary (SJBE) is located on the north coast of Puerto Rico and includes the San Juan Bay, San José Lagoon, La Torrecilla Lagoon and Piñones Lagoon, as well as the Martín Peña and the Suárez Canals. The SJBE watershed has the highest density of inhabitants and major industrial activities in Puerto Rico. As a result, the SJBE is impacted by wastewater from combined-sewer overflows, faulty sewer lines, and storm water runoff; these factors combined with trash accumulation and infilling of the Martín Peña canal, contribute to decreased tidal exchange and reduced flushing in the estuary. To quantify the impact of the obstruction of the Martín Peña canal on anthropogenic nutrient distribution in the SJBE, over 200 sediment grab samples were collected throughout the estuary in 2015. The samples were analyzed for carbonate content, organic matter, grain size, bulk density, percent phosphorus, percent nitrogen (%N), and stable isotopes (δ15N and δ13C). The %N values were highest in the surface sediments from the western portion of the Martín Peña canal, where %N was >0.86%. In contrast, %N from the adjacent San José lagoon averaged <0.2%. Grain size distributions across the SJBE were consistent with low flushing in the inner portions of the SJBE. While the Martín Peña canal remains phosphorus limited, N:P ratios suggest the San Juna Bay and San José Lagoon have undergone major ecological shifts in the past two decades. Our

  2. Changes in River Organic Matter Through Time.

    NASA Astrophysics Data System (ADS)

    Hudson, N.; Baker, A.; Ward, D.

    2006-12-01

    fluorescence, as an increase in pH was also observed in these samples. This work illustrates the dynamic character of river organic matter within a timescale and under conditions that are representative of the natural system.

  3. Evolution of Mineral-Organic Matter Associations in Sediments: From (Bio)mineralization to Burial

    NASA Astrophysics Data System (ADS)

    Estes, E.; Nordlund, D.; Wankel, S. D.; Hansel, C. M.

    2014-12-01

    Physical and chemical associations with mineral surfaces may protect organic matter (OM) from oxidative degradation and allow its preservation in soils and sediments. This study evaluates the mechanism of mineral-based preservation (MBP) and the time scale on which MBP is operative by tracking the co-evolution of oxide minerals and associated OM during mineral precipitation and ripening. Scanning transmission X-ray microscopy coupled to near edge X-ray absorption fine structure spectroscopy (STXM-NEXAFS) as well as bulk NEXAFS demonstrate that, in laboratory systems using cell-free filtrate from pure bacterial cultures, an association between OM and biogenic manganese oxides is rapidly established. OM associated with freshly precipitated biominerals consists of proteinaceous carbon and nitrogen consistent with a microbial origin; this composition remains constant over the course of 96 hours, despite mineral aggregation and structural evolution from hexagonal to triclinic birnessite. We predict that, in natural systems, oxide minerals simultaneously drive remineralization and offer MBP. Different minerals will promote a different balance between the two, imparting a mineral-specific signature on the concentration and composition of preserved OM. We test this idea by conducting incubations of natural estuary waters spiked with compositionally and structurally diverse synthetic oxide minerals. The concentration and composition of mineral-associated OM were tracked by element analyzer-isotope ratio mass spectrometry (EA-IRMS) and STXM-NEXAFS in multiple experiments lasting between 4 weeks and 1 year. Results from incubation experiments are contrasted with natural sediment samples from a range of depositional environments in order to evaluate the potential for long-term sequestration of organic carbon in sediments facilitated by minerals.

  4. Methane and organic matter as sources for excess carbon dioxide in intertidal surface sediments of the German Wadden Sea

    NASA Astrophysics Data System (ADS)

    Böttcher, M. E.; Al-Raei, A. M.; Walpersdorf, E. C.; Heuer, V.; Hinrichs, K.; Hilker, Y.; Engelen, B.; Volkenborn, N.; Segl, M.

    2009-12-01

    The tidal areas of the German Wadden Sea form an important transition zone between the terrestrial and marine environment. Tidal areas represent highly productive marine coastal ecosystems that are under additional influence of riverine inputs. The re-mineralization of organic matter is coupled to reductive processes using oxygen, nitrate, Mn,Fe oxy(hydroxi)des and sulfate as final electron acceptors. Sulfate reduction is involved in the oxidation of DOC and methane, and is the most important anaerobic process leading to a re-flux of CO2 into the water column. CH4 and CO2 are important greenhouse gases. Both are produced in marine sediments but methane fluxes from marine sediments to the water column or the atmosphere are often limited by oxidation. Upon oxidation of organic matter and methane, carbon dioxide is added to pore waters, and both, carbon dioxide and methane may be liberated from intertidal surface sediments into the bottom waters or the atmosphere. Sizes and quality of OM pools and methane concentrations, transport properties as well as biogeochemical processs in intertidal sediments differ in different sediment types (sands, mixed and mud flats). Pore waters and surface sediments from the intertidal of the German Wadden Sea, North Sea, have been analyzed on a seasonal base for a number of (bio)geochemical parameters as, for instance, the contents and isotope composition of TOC, DIC, methane, sulphate reduction rates (SRR), sulfate, sulfide, pyrite, AVS. The typical sediments of the tidal area of Spiekeroog Island have been considered, as sands, mixed and mud flats. The C-13/C-12 partitioning was used to identify the major sources of DIC and key reactions in the coupled C-S cycles. SRR showed a control by season (temperature) and organic matter contents. Bulk organic matter in the surface sediments showed stable carbon isotope data between about -19 and -25 per mil with lighter data found in mixed and mud flats, indicating mixtures between marine and

  5. Deformation behaviors of peat with influence of organic matter.

    PubMed

    Yang, Min; Liu, Kan

    2016-01-01

    Peat is a kind of special material rich in organic matter. Because of the high content of organic matter, it shows different deformation behaviors from conventional geotechnical materials. Peat grain has a non-negligible compressibility due to the presence of organic matter. Biogas can generate from peat and can be trapped in form of gas bubbles. Considering the natural properties of peat, a special three-phase composition of peat is described which indicates the existence of organic matter and gas bubbles in peat. A stress-strain-time model is proposed for the compression of organic matter, and the surface tension effect is considered in the compression model of gas bubbles. Finally, a mathematical model has been developed to simulate the deformation behavior of peat considering the compressibility of organic matter and entrapped gas bubbles. The deformation process is the coupling of volume variation of organic matter, gas bubbles and water drainage. The proposed model is used to simulate a series of peat laboratory oedometer tests, and the model can well capture the test results with reasonable model parameters. Effects of model parameters on deformation of peat are also analyzed.

  6. Spatial Complexity of Soil Organic Matter Forms at Nanometre Scales

    SciTech Connect

    Lehmann,J.; Solomon, D.; Kinyangi, J.; Dathe, L.; Wirick, S.; Jacobsen, C.

    2008-01-01

    Organic matter in soil has been suggested to be composed of a complex mixture of identifiable biopolymers1 rather than a chemically complex humic material2. Despite the importance of the spatial arrangement of organic matter forms in soil3, its characterization has been hampered by the lack of a method for analysis at fine scales. X-ray spectromicroscopy has enabled the identification of spatial variability of organic matter forms, but was limited to extracted soil particles4 and individual micropores within aggregates5, 6. Here, we use synchrotron-based near-edge X-ray spectromicroscopy7 of thin sections of entire and intact free microaggregates6 to demonstrate that on spatial scales below 50 nm resolution, highly variable yet identifiable organic matter forms, such as plant or microbial biopolymers, can be found in soils at distinct locations of the mineral assemblage. Organic carbon forms detected at this spatial scale had no similarity to organic carbon forms of total soil. In contrast, we find that organic carbon forms of total soil were remarkably similar between soils from several temperate and tropical forests with very distinct vegetation composition and soil mineralogy. Spatial information on soil organic matter forms at the scale provided here could help to identify processes of organic matter cycling in soil, such as carbon stability or sequestration and responses to a changing climate.

  7. Organic matter in hydrothermal metal ores and hydrothermal fluids

    USGS Publications Warehouse

    Orem, W.H.; Spiker, E. C.; Kotra, R.K.

    1990-01-01

    Massive polymetallic sulfides are currently being deposited around active submarine hydrothermal vents associated with spreading centers. Chemoautolithotrophic bacteria are responsible for the high production of organic matter also associated with modern submarine hydrothermal activity. Thus, there is a significant potential for organic matter/metal interactions in these systems. We have studied modern and ancient hydrothermal metal ores and modern hydrothermal fluids in order to establish the amounts and origin of the organic matter associated with the metal ores. Twenty-six samples from modern and ancient hydrothermal systems were surveyed for their total organic C contents. Organic C values ranged from 0.01% to nearly 4.0% in these samples. Metal ores from modern and ancient sediment-covered hydrothermal systems had higher organic C values than those from modern and ancient hydrothermal systems lacking appreciable sedimentary cover. One massive pyrite sample from the Galapagos spreading center (3% organic C) had stable isotope values of -27.4% (??13C) and 2.1% (??15N), similar to those in benthic siphonophors from active vents and distinct from seep sea sedimentary organic matter. This result coupled with other analyses (e.g. 13C NMR, pyrolysis/GC, SEM) of this and other samples suggests that much of the organic matter may originate from chemoautolithotrophic bacteria at the vents. However, the organic matter in hydrothermal metal ores from sediment covered vents probably arises from complex sedimentary organic matter by hydrothermal pyrolysis. The dissolved organic C concentrations of hydrothermal fluids from one site (Juan de Fuca Ridge) were found to be the same as that of background seawater. This result may indicate that dissolved organic C is effectively scavenged from hydrothermal fluids by biological activity or by co-precipitation with metal ores. ?? 1990.

  8. Interstellar chemistry recorded in organic matter from primitive meteorites.

    PubMed

    Busemann, Henner; Young, Andrea F; Alexander, Conel M O'd; Hoppe, Peter; Mukhopadhyay, Sujoy; Nittler, Larry R

    2006-05-05

    Organic matter in extraterrestrial materials has isotopic anomalies in hydrogen and nitrogen that suggest an origin in the presolar molecular cloud or perhaps in the protoplanetary disk. Interplanetary dust particles are generally regarded as the most primitive solar system matter available, in part because until recently they exhibited the most extreme isotope anomalies. However, we show that hydrogen and nitrogen isotopic compositions in carbonaceous chondrite organic matter reach and even exceed those found in interplanetary dust particles. Hence, both meteorites (originating from the asteroid belt) and interplanetary dust particles (possibly from comets) preserve primitive organics that were a component of the original building blocks of the solar system.

  9. Geochemical and isotopic composition of organic matter in the Kupferschiefer of the Polish Zechstein basin: relation to maturity and base metal mineralization

    NASA Astrophysics Data System (ADS)

    Bechtel, A.; Gratzer, R.; Püttmann, W.; Oszczepalski, S.

    of organic matter in terms of vitrinite reflectance values and depth of the Kupferschiefer strata, a continuous increase in reflectance of vitrinite is obtained within the Polish Basin. The alteration pattern of organic matter related to base metal mineralization of the Kupferschiefer corresponds to changes in the isotopic composition of organic carbon and calcite. Kerogen within, or close to, Rote Fäule zone is enriched in 13C caused by the preferential release of isotopically light organic compounds through progressive degradation of organic matter. The opposite tendency towards lower δ13C and δ18O values of calcite provides evidence for isotopic exchange between carbonate and the oxidizing, ore-bearing solutions and for organic matter remineralization. In contrast, organic matter and calcite from the Kupferschiefer do not show regular trends in δ13C with increasing thermal maturation.

  10. Pyrogenic organic matter can alter microbial communication

    NASA Astrophysics Data System (ADS)

    Masiello, Caroline; Gao, Xiaodong; Cheng, Hsiao-Ying; Silberg, Jonathan

    2016-04-01

    Soil microbes communicate with each other to manage a large range of processes that occur more efficiently when microbes are able to act simultaneously. This coordination occurs through the continuous production of signaling compounds that are easily diffused into and out of cells. As the number of microbes in a localized environment increases, the internal cellular concentration of these signaling compounds increases, and when a threshold concentration is reached, gene expression shifts, leading to altered (and coordinated) microbial behaviors. Many of these coordinated behaviors have biogeochemically important outcomes. For example, methanogenesis, denitrification, biofilm formation, and the development of plant-rhizobial symbioses are all regulated by a simple class of cell-cell signaling molecules known as acyl homoserine lactones (AHLs). Pyrogenic organic matter in soils can act to disrupt microbial communication through multiple pathways. In the case of AHLs, charcoal's very high surface area can sorb these signaling compounds, preventing microbes from detecting each others' presence (Masiello et al., 2014). In addition, the lactone ring in AHLs is vulnerable to pH increases accompanying PyOM inputs, with soil pH values higher than 7-8 leading to ring opening and compound destabilization. Different microbes use different classes of signaling compounds, and not all microbial signaling compounds are pH-vulnerable. This implies that PyOM-driven pH increases may trigger differential outcomes for Gram negative bacteria vs fungi, for example. A charcoal-driven reduction in microbes' ability to detect cell-cell communication compounds may lead to a shift in the ability of microbes to participate in key steps of C and N cycling. For example, an increase in an archaeon-specific AHL has been shown to lead to a cascade of metabolic processes that eventually results in the upregulation of CH4 production (Zhang et al., 2012). Alterations in similar AHL compounds leads to

  11. Assessment of soil organic matter fluxes at the EU level

    NASA Astrophysics Data System (ADS)

    Gobin, Anne; Campling, Paul

    2010-05-01

    Soil has a complex relationship with climate change. Soil helps take carbon dioxide out of the air and as such it absorbs millions of tons each year, but with the Earth still warming micro-organisms grow faster, consume more soil organic matter and release carbon dioxide. The net result is a relative decline in soil organic carbon. With a growing population and higher bio-energy demands, more land is likely to be required for settlement, for commercial activity and for bio-energy production. Conversions from terrestrial ecosystems to urban and commercial activity will alter both the production and losses of organic matter, and have an indirect impact on potential SOM levels. Conversions between different terrestrial ecosystems have a direct impact on SOM levels. Net SOM losses are reported for several land conversions, e.g. from grassland to arable land, from wetlands to drained agricultural land, from crop rotations to monoculture, reforestation of agricultural land. In the context of looking for measures to support best practices to manage soil organic matter in Europe we propose a method to assess soil organic matter fluxes at the EU level. We adopt a parsimonious approach that is comparable to the nutrient balance approaches developed by the OECD and Eurostat. We describe the methodology and present the initial results of a European carbon balance indicator that uses existing European statistical and land use change databases. The carbon balance consists of the following components: organic matter production (I), organic matter losses (O), land use changes that effect both production and losses (E). These components are set against the (mostly legislative) boundary conditions that determine the maximum input potential (MIP) for soil organic matter. In order to budget SOM losses due to mineralisation, runs will be made with a multi-compartment SOM model that takes into account management practices, climate and different sources of organic matter.

  12. Organic matter chlorination rates in different boreal soils: the role of soil organic matter content.

    PubMed

    Gustavsson, Malin; Karlsson, Susanne; Oberg, Gunilla; Sandén, Per; Svensson, Teresia; Valinia, Salar; Thiry, Yves; Bastviken, David

    2012-02-07

    Transformation of chloride (Cl(-)) to organic chlorine (Cl(org)) occurs naturally in soil but it is poorly understood how and why transformation rates vary among environments. There are still few measurements of chlorination rates in soils, even though formation of Cl(org) has been known for two decades. In the present study, we compare organic matter (OM) chlorination rates, measured by (36)Cl tracer experiments, in soils from eleven different locations (coniferous forest soils, pasture soils and agricultural soils) and discuss how various environmental factors effect chlorination. Chlorination rates were highest in the forest soils and strong correlations were seen with environmental variables such as soil OM content and Cl(-) concentration. Data presented support the hypothesis that OM levels give the framework for the soil chlorine cycling and that chlorination in more organic soils over time leads to a larger Cl(org) pool and in turn to a high internal supply of Cl(-) upon dechlorination. This provides unexpected indications that pore water Cl(-) levels may be controlled by supply from dechlorination processes and can explain why soil Cl(-) locally can be more closely related to soil OM content and the amount organically bound chlorine than to Cl(-) deposition.

  13. Investigation of the organic matter in inactive nuclear tank liquids

    SciTech Connect

    Schenley, R.L.; Griest, W.H.

    1990-08-01

    Environmental Protection Agency (EPA) methodology for regulatory organics fails to account for the organic matter that is suggested by total organic carbon (TOC) analysis in the Oak Ridge National Laboratory (ORNL) inactive nuclear waste-tank liquids and sludges. Identification and measurement of the total organics are needed to select appropriate waste treatment technologies. An initial investigation was made of the nature of the organics in several waste-tank liquids. This report details the analysis of ORNL wastes.

  14. Characterizing Variability In Ohio River Natural Organic Matter

    EPA Science Inventory

    Surface water contains natural organic matter (NOM) which reacts with disinfectants creating disinfection byproducts (DBPs), some of which are USEPA regulated contaminants. Characterizing NOM can provide important insight on DBP formation and water treatment process adaptation t...

  15. Characterizing Variability In Ohio River Natural Organic Matter

    EPA Science Inventory

    Surface water contains natural organic matter (NOM) which reacts with disinfectants creating disinfection byproducts (DBPs), some of which are USEPA regulated contaminants. Characterizing NOM can provide important insight on DBP formation and water treatment process adaptation t...

  16. The Effect of Increased Loads of Dissolved Organic Matter on Estuarine Microbial Community Composition and Function

    PubMed Central

    Traving, Sachia J.; Rowe, Owen; Jakobsen, Nina M.; Sørensen, Helle; Dinasquet, Julie; Stedmon, Colin A.; Andersson, Agneta; Riemann, Lasse

    2017-01-01

    Increased river loads are projected as one of the major consequences of climate change in the northern hemisphere, leading to elevated inputs of riverine dissolved organic matter (DOM) and inorganic nutrients to coastal ecosystems. The objective of this study was to investigate the effects of elevated DOM on a coastal pelagic food web from the coastal northern Baltic Sea, in a 32-day mesocosm experiment. In particular, the study addresses the response of bacterioplankton to differences in character and composition of supplied DOM. The supplied DOM differed in stoichiometry and quality and had pronounced effects on the recipient bacterioplankton, driving compositional changes in response to DOM type. The shifts in bacterioplankton community composition were especially driven by the proliferation of Bacteroidetes, Gemmatimonadetes, Planctomycetes, and Alpha- and Betaproteobacteria populations. The DOM additions stimulated protease activity and a release of inorganic nutrients, suggesting that DOM was actively processed. However, no difference between DOM types was detected in these functions despite different community compositions. Extensive release of re-mineralized carbon, nitrogen and phosphorus was associated with the bacterial processing, corresponding to 25–85% of the supplied DOM. The DOM additions had a negative effect on phytoplankton with decreased Chl a and biomass, particularly during the first half of the experiment. However, the accumulating nutrients likely stimulated phytoplankton biomass which was observed to increase towards the end of the experiment. This suggests that the nutrient access partially outweighed the negative effect of increased light attenuation by accumulating DOM. Taken together, our experimental data suggest that parts of the future elevated riverine DOM supply to the Baltic Sea will be efficiently mineralized by microbes. This will have consequences for bacterioplankton and phytoplankton community composition and function, and

  17. The Biogeochemistry of Chromophoric Dissolved Organic Matter in Coastal Waters

    DTIC Science & Technology

    2016-06-07

    processes controlling the fate and distribution of DOM in coastal waters will allow detailed modeling of the fate of contaminants such as hydrophobic...The Biogeochemistry of Chromophoric Dissolved Organic Matter in Coastal Waters Robert F. Chen Environmental, Coastal and Ocean Sciences University of...coastal waters . Of particular interest is the fate of terrigenous and anthropogenic dissolved organic matter in marine systems. OBJECTIVES 1

  18. Copper binding by dissolved organic matter. II. Variation in type and source of organic matter

    SciTech Connect

    Cabaniss, S.E.; Shuman, M.S.

    1988-01-01

    Copper binding properties of several fulvic acid (FA) and whole water samples are compared by means of an empirical model that was calibrated using Suwannee River FA. Within the calibration limits of the model (pH 5.0-8.5, total Cu concentration 0.1-100 ..mu..M, ionic strength 0.1, and dissolved organic carbon, DOC, 1-10 mg C/1), pCu in solutions of a variety of FA samples are predicted with < 0.2 pCu units root mean square error (RMSE). Within the calibration limits, many whole water sample pCu's are predicted with < 0.3 pCu units RMSE if only one-half of the dissolved organic carbon is assumed to bind Cu. Agreement between prediction and experiment at lower ionic strength is not as good. Variations in Cu binding among different sources of dissolved organic matter appear to be much smaller than those due to chemical factors such as pH and ionic strength.

  19. Carbon cycle: Ocean dissolved organics matter

    NASA Astrophysics Data System (ADS)

    Amon, Rainer M. W.

    2016-12-01

    Large quantities of organic carbon are stored in the ocean, but its biogeochemical behaviour is elusive. Size-age-composition relations now quantify the production of tiny organic molecules as a major pathway for carbon sequestration.

  20. Dissolved Organic Matter, Organic Matter Optical Properties and Mercury in Rivers and Streams

    NASA Astrophysics Data System (ADS)

    Aiken, G. R.; Brigham, M. E.; Shanley, J. B.; Krabbenhoft, D. P.

    2008-12-01

    Interactions of mercury (Hg) with dissolved organic matter (DOM) play important roles in controlling concentrations, reactivity, bioavailability and transport of Hg in aquatic systems. Recent studies have shown that DOM influences Hg solubility through strong binding interactions and the stabilization of nanocolloidal mercuric sulfide. In this paper we present the results of watershed based studies associated with US Geological Survey NAWQA and WEBB Programs designed to better define the factors controlling the export of Hg in stream systems. We investigated the seasonal and spatial variability of dissolved organic matter quantity and quality, and the concentrations of dissolved Hg and methylmercury (MeHg) in 12 rivers and streams representing a range of watershed types that varied in climate, landscape, Hg deposition and water chemistry. DOM concentrations and composition, based on DOM fractionation and ultraviolet/visible absorption spectroscopic analyses, varied greatly both between sites, and seasonally within sites. Strong relationships were found between DOM and total dissolved Hg concentrations in almost all of the systems. The relationships between total dissolved Hg concentration and hydrophobic organic acid (HPOA) content (aquatic humic substances) were stronger than those observed between Hg and DOM, supporting the hypothesis that interactions between Hg and the HPOA fraction are important drivers for the transport of dissolved Hg in aquatic systems. The relationships between MeHg and DOM and HPOA content were not as strong as those observed with Hg. In all systems, UV absorbance measured at 254 nm correlated strongly with DOM, HPOA content and Hg concentrations. The relationships between DOM concentration and absorbance for the range of systems were quite variable because not all of the dissolved organic carbon in a given sample absorbs UV light to the same degree and each system exhibited a different relationship. However, the relationship between HPOA

  1. The role of planktonic Flavobacteria in processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics.

    PubMed

    Williams, Timothy J; Wilkins, David; Long, Emilie; Evans, Flavia; DeMaere, Mathew Z; Raftery, Mark J; Cavicchioli, Ricardo

    2013-05-01

    Heterotrophic marine bacteria play key roles in remineralizing organic matter generated from primary production. However, far more is known about which groups are dominant than about the cellular processes they perform in order to become dominant. In the Southern Ocean, eukaryotic phytoplankton are the dominant primary producers. In this study we used metagenomics and metaproteomics to determine how the dominant bacterial and archaeal plankton processed bloom material. We examined the microbial community composition in 14 metagenomes and found that the relative abundance of Flavobacteria (dominated by Polaribacter) was positively correlated with chlorophyll a fluorescence, and the relative abundance of SAR11 was inversely correlated with both fluorescence and Flavobacteria abundance. By performing metaproteomics on the sample with the highest relative abundance of Flavobacteria (Newcomb Bay, East Antarctica) we defined how Flavobacteria attach to and degrade diverse complex organic material, how they make labile compounds available to Alphaproteobacteria (especially SAR11) and Gammaproteobacteria, and how these heterotrophic Proteobacteria target and utilize these nutrients. The presence of methylotrophic proteins for archaea and bacteria also indicated the importance of metabolic specialists. Overall, the study provides functional data for the microbial mechanisms of nutrient cycling at the surface of the coastal Southern Ocean.

  2. Composition and reactivity of ferrihydrite-organic matter associations

    NASA Astrophysics Data System (ADS)

    Eusterhues, Karin; Hädrich, Anke; Neidhardt, Julia; Küsel, Kirsten; Totsche, Kai

    2014-05-01

    The formation of organo-mineral associations affects many soil forming processes. On the one hand, it will influence soil organic matter composition and development, because the complex organic matter mixtures usually fractionate during their association with mineral surfaces. Whereas the associated fraction is supposed to be stabilized, the non-associated fraction remains mobile and available to degradation by microorganisms. On the other hand, the organic coating will completely change the interface properties of Fe oxides such as solubility, charge and hydrophobicity. This in turn will strongly influence their reactivity towards nutrients and pollutants, the adsorption of new organic matter, and the availability of ferric Fe towards microorganisms. To better understand such processes we produced ferrihydrite-organic matter associations by adsorption and coprecipitation in laboratory experiments. As a surrogate for dissolved soil organic matter we used the water-extractable fraction of a Podzol forest-floor layer under spruce. Sorptive fractionation of the organic matter was investigated by 13C NMR and FTIR. Relative to the original forest-floor extract, the ferrihydrite-associated OM was enriched in polysaccharides but depleted in aliphatic C and carbonyl C, especially when adsorption took place. Liquid phase incubation experiments were carried out with an inoculum extracted from the podzol forest-floor under oxic conditions at pH 4.8 to quantify the mineralization of the adsorbed and coprecipitated organic matter. These experiments showed that the association with ferrihydrite stabilized the associated organic matter, but that differences in the degradability of adsorbed and coprecipitated organic matter were small. We therefore conclude that coprecipitation does not lead to a significant formation of microbial inaccessible organic matter domains. Microbial reduction experiments were performed using Geobacter bremensis. We observed that increasing amounts of

  3. Chemical characterization of dissolved organic matter in an alpine stream from thawing and collapsing permafrost to Qinghai Lake

    NASA Astrophysics Data System (ADS)

    Wang, Y.; Xu, Y.

    2016-12-01

    The Tibetan Plateau is the world's largest and highest plateau, approximately two thirds of which is covered by permafrost. Due to recent climate warming, large organic carbon stored in the permafrost is thawing and becomes available for transport to aquatic ecosystems (i.e., stream and lake) as dissolved organic matter (DOM) and fine particulate organic matter (POM). These DOM and POM are not only important food sources for the aquatic food web, but also a significant feedback if remineralized during transport. In this work, we collected water samples along a stream from the headwater in the Permafrost region to the downstream in the Qinghai Lake. The concentration and composition of DOM were determined using high temperature combustion analysis, UV- Vis absorption spectroscopy and fluorescence spectroscopy. The concentration of dissolved organic carbon decreased sharply from 13.87 mg/L to 4.32 mg/L from collapsing permafrost area (3850 m a.s.l.) to the foot of the mountain (3200 m a.s.l.), and then fluctuated in a narrow range between 3.00 mg/L and 4.50 mg/L. The DOM with high humic-like fluorescence, specific UV absorbance (SUVA254), and low spectral slope ratio (S275-295) and fluorescence index (FI) was observed in the headwater, which was distinct difference from that at the middle and downstream area where the DOM are less aromatic and low molecular weight. Meanwhile, the freshness index (β/α) increased slightly in mid and down-stream. This increasing trend for FI and β/α indicated a contribution of recently in situ produced DOM by aquatic bacteria and algae in the stream. We speculate that the biological process is an important way to cause the chemical change of DOM composition and concentration, and therefore the thawing and transport of permafrost carbon may play a key role in sustaining the alpine stream ecosystem.

  4. High dimensional reflectance analysis of soil organic matter

    NASA Technical Reports Server (NTRS)

    Henderson, T. L.; Baumgardner, M. F.; Franzmeier, D. P.; Stott, D. E.; Coster, D. C.

    1992-01-01

    Recent breakthroughs in remote-sensing technology have led to the development of high spectral resolution imaging sensors for observation of earth surface features. This research was conducted to evaluate the effects of organic matter content and composition on narrowband soil reflectance across the visible and reflective infrared spectral ranges. Organic matter from four Indiana agricultural soils, ranging in organic C content from 0.99 to 1.72 percent, was extracted, fractionated, and purified. Six components of each soil were isolated and prepared for spectral analysis. Reflectance was measured in 210 narrow bands in the 400- to 2500-nm wavelength range. Statistical analysis of reflectance values indicated the potential of high dimensional reflectance data in specific visible, near-infrared, and middle-infrared bands to provide information about soil organic C content, but not organic matter composition. These bands also responded significantly to Fe- and Mn-oxide content.

  5. High dimensional reflectance analysis of soil organic matter

    NASA Technical Reports Server (NTRS)

    Henderson, T. L.; Baumgardner, M. F.; Franzmeier, D. P.; Stott, D. E.; Coster, D. C.

    1992-01-01

    Recent breakthroughs in remote-sensing technology have led to the development of high spectral resolution imaging sensors for observation of earth surface features. This research was conducted to evaluate the effects of organic matter content and composition on narrowband soil reflectance across the visible and reflective infrared spectral ranges. Organic matter from four Indiana agricultural soils, ranging in organic C content from 0.99 to 1.72 percent, was extracted, fractionated, and purified. Six components of each soil were isolated and prepared for spectral analysis. Reflectance was measured in 210 narrow bands in the 400- to 2500-nm wavelength range. Statistical analysis of reflectance values indicated the potential of high dimensional reflectance data in specific visible, near-infrared, and middle-infrared bands to provide information about soil organic C content, but not organic matter composition. These bands also responded significantly to Fe- and Mn-oxide content.

  6. Natural organic matter properties in Swedish agricultural streams

    NASA Astrophysics Data System (ADS)

    Bieroza, Magdalena; Kyllmar, Katarina; Bergström, Lars; Köhler, Stephan

    2016-04-01

    We have analysed natural organic matter (NOM) properties in 18 agricultural streams in Sweden covering a broad range of environmental (climate, soil type), land use and water quality (nutrient and concentrations, pH, alkalinity) characteristics. Stream water samples collected every two weeks within an ongoing Swedish Monitoring Programme for Agriculture have been analysed for total/dissolved organic carbon, absorbance and fluorescence spectroscopy. A number of quantitative and qualitative spectroscopic parameters was calculated to help to distinguish between terrestrially-derived, refractory organic material and autochthonous, labile material indicative of biogeochemical transformations of terrestrial NOM and recent biological production. The study provides insights into organic matter properties and carbon budgets in agricultural streams and improves understanding of how agricultural catchments transform natural and anthropogenic fluxes of organic matter and nutrients to signals observed in receiving waters.

  7. Modeling organic matter stabilization during windrow composting of livestock effluents.

    PubMed

    Oudart, D; Paul, E; Robin, P; Paillat, J M

    2012-01-01

    Composting is a complex bioprocess, requiring a lot of empirical experiments to optimize the process. A dynamical mathematical model for the biodegradation of the organic matter during the composting process has been developed. The initial organic matter expressed by chemical oxygen demand (COD) is decomposed into rapidly and slowly degraded compartments and an inert one. The biodegradable COD is hydrolysed and consumed by microorganisms and produces metabolic water and carbon dioxide. This model links a biochemical characterization of the organic matter by Van Soest fractionating with COD. The comparison of experimental and simulation results for carbon dioxide emission, dry matter and carbon content balance showed good correlation. The initial sizes of the biodegradable COD compartments are explained by the soluble, hemicellulose-like and lignin fraction. Their sizes influence the amplitude of the carbon dioxide emission peak. The initial biomass is a sensitive variable too, influencing the time at which the emission peak occurs.

  8. Preferential sequestration of terrestrial organic matter in boreal lake sediments

    NASA Astrophysics Data System (ADS)

    Guillemette, François; von Wachenfeldt, Eddie; Kothawala, Dolly N.; Bastviken, David; Tranvik, Lars J.

    2017-04-01

    The molecular composition and origin has recently been demonstrated to play a critical role in the persistence of organic matter in lake water, but it is unclear to what degree chemical attributes and sources may also control settling and burial of organic matter in lake sediments. Here we compared the annual contribution of allochthonous and autochthonous sources to the organic matter settling in the water column and present in the sediments of 12 boreal lakes. We used the fluorescence properties and elemental composition of the organic matter to trace its origin and found a consistent pattern of increasing contribution of terrestrial compounds in the sediments as compared to the settling matter, with an annual average allochthony of 87% and 57%, respectively. Seasonal data revealed a predominance of in-lake-produced compounds sinking in the water column in summer. Yet only a slight concurrent decrease in the contribution of terrestrial C to lake sediments was observed during the same period, and sediment allochthony increased again to high levels in autumn. Our results reveal a preferential preservation of allochthonous matter in the sediments and highlight the role of lakes as sequesters of organic carbon primarily originating from the surrounding landscape.

  9. Advanced solid-state NMR spectroscopy of natural organic matter.

    PubMed

    Mao, Jingdong; Cao, Xiaoyan; Olk, Dan C; Chu, Wenying; Schmidt-Rohr, Klaus

    2017-05-01

    Solid-state NMR is essential for the characterization of natural organic matter (NOM) and is gaining importance in geosciences and environmental sciences. This review is intended to highlight advanced solid-state NMR techniques, especially a systematic approach to NOM characterization, and their applications to the study of NOM. We discuss some basics of how to acquire high-quality and quantitative solid-state (13)C NMR spectra, and address some common technical mistakes that lead to unreliable spectra of NOM. The identification of specific functional groups in NOM, primarily based on (13)C spectral-editing techniques, is described and the theoretical background of some recently-developed spectral-editing techniques is provided. Applications of solid-state NMR to investigating nitrogen (N) in NOM are described, focusing on limitations of the widely used (15)N CP/MAS experiment and the potential of improved advanced NMR techniques for characterizing N forms in NOM. Then techniques used for identifying proximities, heterogeneities and domains are reviewed, and some examples provided. In addition, NMR techniques for studying segmental dynamics in NOM are reviewed. We also briefly discuss applications of solid-state NMR to NOM from various sources, including soil organic matter, aquatic organic matter, organic matter in atmospheric particulate matter, carbonaceous meteoritic organic matter, and fossil fuels. Finally, examples of NMR-based structural models and an outlook are provided. Copyright © 2016 Elsevier B.V. All rights reserved.

  10. The search for indigenous lunar organic matter.

    NASA Technical Reports Server (NTRS)

    Sagan, C.

    1972-01-01

    It is argued that the absence of organic compounds from returned lunar samples is to be expected even for a lunar history rich in primordial organics. The sites most likely to yield lunar organic compounds have not been investigated, and there may be an area of investigation conceivably critical to problems in prebiological chemistry and the early history of the solar system awaiting continued lunar exploration, manned or unmanned.

  11. The search for indigenous lunar organic matter.

    NASA Technical Reports Server (NTRS)

    Sagan, C.

    1972-01-01

    It is argued that the absence of organic compounds from returned lunar samples is to be expected even for a lunar history rich in primordial organics. The sites most likely to yield lunar organic compounds have not been investigated, and there may be an area of investigation conceivably critical to problems in prebiological chemistry and the early history of the solar system awaiting continued lunar exploration, manned or unmanned.

  12. Organic Matter in Space (IAU S251)

    NASA Astrophysics Data System (ADS)

    Kwok, Sun; Sanford, Scott

    2008-10-01

    Preface; From the local organising committee; Organising committee; Conference participants; Opening address of Symposium 251 C. Cesarsky; Session I. Observations of organic compounds beyond the Solar System William Irvine, Ewine van Dishoeck, Yvonne Pendleton and Hans Olofsson; Session II. Organic compounds within the Solar System Scott Sandford, Ernst Zinner and Dale Cruikshank; Session III. Laboratory analogues of organic compounds in space Max Bernstein and Thomas Henning; Banquet speech; Author index; Object index.

  13. Organic Matter in Space (IAU S251)

    NASA Astrophysics Data System (ADS)

    Kwok, Sun; Sanford, Scott

    2009-01-01

    Preface; From the local organising committee; Organising committee; Conference participants; Opening address of Symposium 251 C. Cesarsky; Session I. Observations of organic compounds beyond the Solar System William Irvine, Ewine van Dishoeck, Yvonne Pendleton and Hans Olofsson; Session II. Organic compounds within the Solar System Scott Sandford, Ernst Zinner and Dale Cruikshank; Session III. Laboratory analogues of organic compounds in space Max Bernstein and Thomas Henning; Banquet speech; Author index; Object index.

  14. Defining the quality of soil organic matter

    EPA Science Inventory

    Soils represent the largest terrestrial pool of carbon (C) and hold approximately two-thirds of all C held in these ecosystems. However, not all C in soils is of equal quality. Some fractions of the organic forms, i.e., soil organic carbon (SOC) have long residence times while ...

  15. Defining the quality of soil organic matter

    EPA Science Inventory

    Soils represent the largest terrestrial pool of carbon (C) and hold approximately two-thirds of all C held in these ecosystems. However, not all C in soils is of equal quality. Some fractions of the organic forms, i.e., soil organic carbon (SOC) have long residence times while ...

  16. Soil organic matter contribution to the NW Mediterranean (Invited)

    NASA Astrophysics Data System (ADS)

    Kim, J.; Buscail, R.; Blokker, J.; Kerhervé, P.; Schouten, S.; Ludwig, W.; Sinninghe Damsté, J. S.

    2009-12-01

    The BIT (Branched and Isoprenoid Tetraether) index has recently been introduced as a proxy for soil organic matter input and is based on the relative abundance of non-isoprenoidal glycerol dialkyl glycerol tetraethers (GDGTs) derived from organisms living in terrestrial environments versus a structurally related isoprenoid GDGT “crenarchaeol” produced by marine Crenarchaeota (Hopmans et al., 2004). In this study, detailed spatial distribution patterns of BIT index were investigated in combination with other organic parameters in the continental margin of the north western Mediterranean. Based on a transect sampling strategy from source (land) to sink (sea) via river, we analysed a variety of soils from the Têt and Rhône basins, suspended particulate matter in waters of the Têt and Rhône rivers flowing into the Gulf of Lions, and marine surface sediments from the Gulf of Lions collected before and after a flood occurred in June 2008. Our study allows us to track BIT values along the transport pathway of soil organic matter and thus to estimate soil organic matter contribution in marine sediments in the Gulf of Lions (NW Mediterranean), a river-dominated continental margin. Hopmans, E.C., Weijers, J.W.H., Schefuss, E., Herfort, L., Sinninghe Damsté, J.S., Schouten, S., 2004. A novel proxy for terrestrial organic matter in sediments based on branched and isoprenoidtetraether lipids. Earth and Planetary Science Letters 224, 107-116.

  17. Effects of Crayfish on Quality of Fine Particulate Organic Matter

    NASA Astrophysics Data System (ADS)

    Montemarano, J. J.; Kershner, M. W.; Leff, L. G.

    2005-05-01

    The origin and ontogeny of detritus often determines its bioavailability. Crayfish shred and consume detrital organic matter, influencing fine particulate organic matter (FPOM) availability, composition and quality. Given consumption of FPOM by many invertebrates, crayfish can indirectly affect these organisms by altering FPOM bioavailability through organic matter fragmentation, biofilm disturbance, and defecation. These effects may or may not vary among coarse particulate organic matter (CPOM) from different leaf species. To assess crayfish effects on FPOM quality, crayfish were fed stream-conditioned maple or oak leaves in hanging 1-mm mesh-bottom baskets in aquaria. After 12 h, crayfish and remaining leaves were removed. FPOM fragments that fell through the mesh were vacuum filtered and analyzed for percent organic matter, C:N ratio, and bacterial abundance. The same analyses were conducted on crayfish feces collected using finger cots encasing crayfish abdomens. C:N ratios did not differ between feces and maple leaf CPOM, but were lower in FPOM produced through fragmentation and disturbance (P = 0.023). Overall, crayfish alter the ontogeny of detritus, which may, in turn, affect stream FPOM dynamics.

  18. Pedogenesis evolution of mine technosols: focus onto organic matter implication

    NASA Astrophysics Data System (ADS)

    Grégoire, Pascaud; Marilyne, Soubrand; Laurent, Lemee; Husseini Amelène, El-Mufleh Al; Marion, Rabiet; Emmanuel, Joussein

    2014-05-01

    Keywords: Mine technosols, pedogenesis, organic matter, environmental impact, pyr-GC-MS Technosols include soils subject to strong anthropogenic pressure and particularly to soil influenced by human transformed materials. In this context, abandoned mine sites contain a large amount of transformed waste materials often enriched with metals and/or metalloids. The natural evolution of technosols (pedogenesis) may induces the change in contaminants behaviour in term of stability of bearing phases, modification of pH oxydo-reduction conditions, organic matter turnover, change in permeability, or influence of vegetation cover. The fate of these elements in the soil can induce major environmental problems (contamination of biosphere and water resource). This will contribute to a limited potential use of these soils, which represent yet a large area around the world. The initial contamination of the parental material suggests that the pedological cover would stabilize the soil; however, the chemical reactivity must be taken in consideration particularly with respect to potential metal leachings. In this case, it is quite important to understand the development of soil in this specific context. Consequently, the global aims of this study are to understand the functioning of mine Technosols focusing onto the organic matter implication in their pedogenesis. Indeed, soil organic matter constitutes an heterogeneous fraction of organic compounds that plays an important role in the fate and the transport of metals and metalloids in soils. Three different soil profiles were collected representative to various mining context (contamination, time, climat), respectively to Pb-Ag, Sn and Au exploitations. Several pedological parameters were determined like CEC, pH, %Corg, %Ntot, C/N ratio, grain size distribution and chemical composition. The evolution of the nature of organic matter in Technosol was studied by elemental analyses and thermochemolysis was realized on the total and

  19. Organic Matter Application Can Reduce Copper Toxicity in Tomato Plants

    ERIC Educational Resources Information Center

    Campbell, Brian

    2010-01-01

    Copper fungicides and bactericides are often used in tomato cultivation and can cause toxic Cu levels in soils. In order to combat this, organic matter can be applied to induce chelation reactions and form a soluble complex by which much of the Cu can leach out of the soil profile or be taken up safely by plants. Organic acids such as citric,…

  20. Black Carbon in Estuarine and Coastal Ocean Dissolved Organic Matter

    NASA Technical Reports Server (NTRS)

    Mannino, Antonio; Harvey, H. Rodger

    2003-01-01

    Analysis of high-molecular-weight dissolved organic matter (DOM) from two estuaries in the northwest Atlantic Ocean reveals that black carbon (BC) is a significant component of previously uncharacterized DOM, suggesting that river-estuary systems are important exporters of recalcitrant dissolved organic carbon to the ocean.

  1. PHOTOCHEMICAL TRANSFORMATIONS OF DISSOLVED ORGANIC MATTER IN A BLACKWATER RIVER

    EPA Science Inventory

    We examined photochemical alterations of dissolved organic matter (DOM) from the Satilla River, a high DOC (10-40 mg/liter) blackwater river of southeast Georgia. Water samples were filtered to remove most organisms, placed in quartz tubes, and incubated under natural sunlight a...

  2. Organic Matter Application Can Reduce Copper Toxicity in Tomato Plants

    ERIC Educational Resources Information Center

    Campbell, Brian

    2010-01-01

    Copper fungicides and bactericides are often used in tomato cultivation and can cause toxic Cu levels in soils. In order to combat this, organic matter can be applied to induce chelation reactions and form a soluble complex by which much of the Cu can leach out of the soil profile or be taken up safely by plants. Organic acids such as citric,…

  3. PHOTOCHEMICAL TRANSFORMATIONS OF DISSOLVED ORGANIC MATTER IN A BLACKWATER RIVER

    EPA Science Inventory

    We examined photochemical alterations of dissolved organic matter (DOM) from the Satilla River, a high DOC (10-40 mg/liter) blackwater river of southeast Georgia. Water samples were filtered to remove most organisms, placed in quartz tubes, and incubated under natural sunlight a...

  4. Organic Matter Characteristics and Nutrient Content in Eroded Soils

    NASA Astrophysics Data System (ADS)

    Garcia, Carlos; Hernandez, Teresa; Barahona, Ascension; Costa, Francisco

    1996-01-01

    Twenty-one severely eroded soils of SE Spain (Torriorthent xeric soils) were studied. These soils form a fragile system characterized by soils with a low density of plant cover (<5%), are loamy and occur in a semiarid climate. The soils formerly were used for agricultural purposes but were abandoned at least 15 years ago. These eroded soils had a low total organic carbon content, and their humic substances, humic acid carbon, and carbohydrates were lower compared with soils that had never been cultivated (natural soils). The variables in which the effects of erosion were particularly noted were those related with the active organic matter (respiration and water-soluble organic matter). Those eroded soils with higher salt content showed lower organic matter and carbohydrate contents. Only total nitrogen was correlated with the carbon fractions in the eroded soils.

  5. Interstellar and Solar System organic matter preserved in interplanetary dust

    NASA Astrophysics Data System (ADS)

    Messenger, Scott; Nakamura-Messenger, K.

    Interplanetary dust particles (IDPs) collected in the Earths stratosphere derive from collisions among asteroids and by the disruption and outgassing of short-period comets. Chondritic porous (CP) IDPs are among the most primitive Solar System materials. CP-IDPs have been linked to cometary parent bodies by their mineralogy, textures, C-content, and dynamical histories. CP-IDPs are fragile, fine-grained (< um) assemblages of anhydrous amorphous and crystalline silicates, oxides and sulfides bound together by abundant carbonaceous material. Ancient silicate, oxide, and SiC stardust grains exhibiting highly anomalous isotopic compositions are abundant in CP-IDPs, constituting 0.01-1% of the mass of the particles. The organic matter in CP-IDPs is isotopically anomalous, with enrichments in D/H reaching 50x the terrestrial SMOW value and 15N/14N ratios up to 3x terrestrial standard compositions. These anomalies are indicative of low T (10-100 K) mass fractionation in cold molecular cloud or the outermost reaches of the protosolar disk. The organic matter shows distinct morphologies, including sub-um globules, bubbly textures, featureless, and with mineral inclusions. Infrared spectroscopy and mass spectrometry studies of organic matter in IDPs reveals diverse species including aliphatic and aromatic compounds. The organic matter with the highest isotopic anomalies appears to be richer in aliphatic compounds. These materials also bear similarities and differences with primitive, isotopically anomalous organic matter in carbonaceous chondrite meteorites. The diversity of the organic chemistry, morphology, and isotopic properties in IDPs and meteorites reflects variable preservation of interstellar/primordial components and Solar System processing. One unifying feature is the presence of sub-um isotopically anomalous organic globules among all primitive materials, including IDPs, meteorites, and comet Wild-2 samples returned by the Stardust mission. We will present an

  6. Interstellar and Solar System Organic Matter Preserved in Interplanetary Dust

    NASA Astrophysics Data System (ADS)

    Messenger, Scott R.; Nakamura-Messenger, Keiko

    2015-08-01

    Interplanetary dust particles (IDPs) collected in the Earth’s stratosphere derive from collisions among asteroids and by the disruption and outgassing of short-period comets. Chondritic porous (CP) IDPs are among the most primitive Solar System materials. CP-IDPs have been linked to cometary parent bodies by their mineralogy, textures, C-content, and dynamical histories. CP-IDPs are fragile, fine-grained (< um) assemblages of anhydrous amorphous and crystalline silicates, oxides and sulfides bound together by abundant carbonaceous material. Ancient silicate, oxide, and SiC stardust grains exhibiting highly anomalous isotopic compositions are abundant in CP-IDPs, constituting 0.01 - 1 % of the mass of the particles. The organic matter in CP-IDPs is isotopically anomalous, with enrichments in D/H reaching 50x the terrestrial SMOW value and 15N/14N ratios up to 3x terrestrial standard compositions. These anomalies are indicative of low T (10-100 K) mass fractionation in cold molecular cloud or the outermost reaches of the protosolar disk. The organic matter shows distinct morphologies, including sub-um globules, bubbly textures, featureless, and with mineral inclusions. Infrared spectroscopy and mass spectrometry studies of organic matter in IDPs reveals diverse species including aliphatic and aromatic compounds. The organic matter with the highest isotopic anomalies appears to be richer in aliphatic compounds. These materials also bear similarities and differences with primitive, isotopically anomalous organic matter in carbonaceous chondrite meteorites. The diversity of the organic chemistry, morphology, and isotopic properties in IDPs and meteorites reflects variable preservation of interstellar/primordial components and Solar System processing. One unifying feature is the presence of sub-um isotopically anomalous organic globules among all primitive materials, including IDPs, meteorites, and comet Wild-2 samples returned by the Stardust mission. We will present

  7. GROUNDWATER TRANSPORT OF HYDROPHOBIC ORGANIC COMPOUNDS IN THE PRESENCE OF DISSOLVED ORGANIC MATTER

    EPA Science Inventory

    The effects of dissolved organic matter (DOM) on the transport of hydrophobic organic compounds in soil columns were investigated. Three compounds (naphthalene, phenanthrene and DDT) that spanned three orders of magnitude in water solubility were used. Instead of humic matter, mo...

  8. GROUNDWATER TRANSPORT OF HYDROPHOBIC ORGANIC COMPOUNDS IN THE PRESENCE OF DISSOLVED ORGANIC MATTER

    EPA Science Inventory

    The effects of dissolved organic matter (DOM) on the transport of hydrophobic organic compounds in soil columns were investigated. Three compounds (naphthalene, phenanthrene and DDT) that spanned three orders of magnitude in water solubility were used. Instead of humic matter, mo...

  9. Response of organic matter quality in permafrost soils to warming

    NASA Astrophysics Data System (ADS)

    Plaza, C.; Pegoraro, E.; Schuur, E.

    2016-12-01

    Global warming is predicted to thaw large quantities of the perennially frozen organic matter stored in northern permafrost soils. Upon thaw, this organic matter will be exposed to lateral export to water bodies and to microbial decomposition, which may exacerbate climate change by releasing significant amounts of greenhouse gases. To gain an insight into these processes, we investigated how the quality of permafrost soil organic matter responded to five years of warming. In particular, we sampled control and experimentally warmed soils in 2009 and 2013 from an experiment established in 2008 in a moist acidic tundra ecosystem in Healy, Alaska. We examined surface organic (0 to 15 cm), deep organic (15 to 35 cm), and mineral soil layers (35 to 55 cm) separately by means of stable isotope analysis (δ13C and δ15N) and solid-state 13C nuclear magnetic resonance. Compared to the control, the experimental warming did not affect the isotopic and molecular composition of soil organic matter across the depth profile. However, we did find significant changes with time. In particular, in the surface organic layer, δ13C decreased and alkyl/O-alkyl ratio increased from 2009 to 2013, which indicated variations in soil organic sources (e.g., changes in vegetation) and accelerated decomposition. In the deep organic layer, we found a slight increase in δ15N with time. In the mineral layer, δ13C values decreased slightly, whereas alkyl C/O-alkyl ratio increased, suggesting a preferential loss of relatively more degraded organic matter fractions probably by lateral transport by water flowing through the soil. Acknowledgements: This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 654132. Web site: http://vulcan.comule.com

  10. Effects of Organic Matter on the Growth of Thiobacillus intermedius

    PubMed Central

    London, Jack; Rittenberg, Sydney C.

    1966-01-01

    London, Jack (University of California, Los Angeles), and Sydney C. Rittenberg. Effects of organic matter on the growth of Thiobacillus intermedius. J. Bacteriol. 91:1062–1069. 1966.—Yeast extract, glucose, glutamate, and other organic materials stimulate the rate and extent of growth of Thiobacillus intermedius in thiosulfate broth. Growth did not occur in glucose or glutamate mineral salts medium in the absence of thiosulfate, although a stable variant was obtained which grows on yeast extract alone. Cells harvested from media supplemented with organic matter have a reduced rate of thiosulfate oxidation (20 to 30% of autotrophic), oxidize the organic supplement, and have an additive rate of oxidation in the presence of both the organic substrate and thiosulfate. Carboxydismutase synthesis is repressed, and the incorporation of bicarbonate carbon into cell material is almost completely eliminated by the presence of organic matter in the growth medium. It is concluded that the availability of organic matter eliminates the autotrophic assimilatory mechanisms of T. intermedius but not its autotrophic energy-generating system. The data are discussed in relation to the existence of “obligate” chemoautotrophic bacteria. PMID:5929743

  11. Removal of dissolved organic matter by anion exchange: Effect of dissolved organic matter properties

    USGS Publications Warehouse

    Boyer, T.H.; Singer, P.C.; Aiken, G.R.

    2008-01-01

    Ten isolates of aquatic dissolved organic matter (DOM) were evaluated to determine the effect that chemical properties of the DOM, such as charge density, aromaticity, and molecular weight, have on DOM removal by anion exchange. The DOM isolates were characterized asterrestrial, microbial, or intermediate humic substances or transphilic acids. All anion exchange experiments were conducted using a magnetic ion exchange (MIEX) resin. The charge density of the DOM isolates, determined by direct potentiometric titration, was fundamental to quantifying the stoichiometry of the anion exchange mechanism. The results clearly show that all DOM isolates were removed by anion exchange; however, differences among the DOM isolates did influence their removal by MIEX resin. In particular, MIEX resin had the greatest affinity for DOM with high charge density and the least affinity for DOM with low charge density and low aromaticity. This work illustrates that the chemical characteristics of DOM and solution conditions must be considered when evaluating anion exchange treatment for the removal of DOM. ?? 2008 American Chemical Society.

  12. Organic content of particulate matter in turbine engine exhaust

    SciTech Connect

    Robertson, D.J.; Groth, R.H.; Blasko, T.J.

    1980-03-01

    Research report:Solid particulate matter, mainly carbon, emitted during fossil fuels combustion contains a variety of organic species adsorbed onto it. Studies were conducted to identify the organic compounds generated by a gas turbine engine. Total organics were determined by gas chromatography and flame ionization. Polynuclear aromatic hydrocarbons, phenols, and nitrosamines were present in samples collected from exhaust gases. (1 diagram, 4 references, 11 tables)

  13. Reconsidering remineralization strategies to include nanoparticle hydroxyapatite.

    PubMed

    Kutsch, V Kim; Chaiyabutr, Yada; Milicich, Graeme

    2013-03-01

    Dental caries is a transmissible biofilm-mediated disease of the teeth that is defined by prolonged periods of low pH resulting in net mineral loss from the teeth. Hydroxyapatite, fluorapatite, and the carbonated forms of calcium phosphate form the main mineral content of dental hard tissues: enamel, dentin, and cementum. Active dental caries results when the biofilm pH on the tooth surface drops below the dissolution threshold for hydroxyapatite and fluorapatite. The clinical evidence of this net mineral loss is porosity, whitespot lesions, caries lesions, and/or cavitation. The potential to reverse this mineral loss through remineralization has been well documented, although previous remineralization strategies for dental hard tissues have focused on the use of fluorides and forms of calcium phosphate. This in-vitro study documented the deposition of nanoparticle hydroxyapatite on demineralized enamel surfaces after treatment with an experimental remineralization gel. This finding supports consideration of an additional approach to remineralization that includes pH neutralization strategies and nanoparticle hydroxyapatite crystals.

  14. Structural and Isotopic Analysis of Organic Matter in Carbonaceous Chondrites

    NASA Astrophysics Data System (ADS)

    Gilmour, I.

    2003-12-01

    The most ancient organic molecules available for study in the laboratory are those carried to Earth by infalling carbonaceous chondrite meteorites. All the classes of compounds normally considered to be of biological origin are represented in carbonaceous meteorites and, aside from some terrestrial contamination; it is safe to assume that these organic species were produced by nonbiological methods of synthesis. In effect, carbonaceous chondrites are a natural laboratory containing organic molecules that are the product of ancient chemical evolution. Understanding the sources of organic molecules in meteorites and the chemical processes that led to their formation has been the primary research goal. Circumstellar space, the solar nebulae, and asteroidal meteorite parent bodies have all been suggested as environments where organic matter may have been formed. Determination of the provenance of meteoritic organic matter requires detailed structural and isotopic information, and the fall of the Murchison CM2 chondrite in 1969 enabled the first systematic organic analyses to be performed on comparatively pristine samples of extraterrestrial organic material. Prior to that, extensive work had been undertaken on the organic matter in a range of meteorite samples galvanized, in part, by the controversial debate in the early 1960s on possible evidence for former life in the Orgueil carbonaceous chondrite (Fitch et al., 1962; Meinschein et al., 1963). It was eventually demonstrated that the suggested biogenic material was terrestrial contamination ( Fitch and Anders, 1963; Anders et al., 1964); however, the difficulties created by contamination have posed a continuing problem in the analysis and interpretation of organic material in meteorites (e.g., Watson et al., 2003); this has significant implications for the return of extraterrestrial samples by space missions. Hayes (1967) extensively reviewed data acquired prior to the availability of Murchison samples

  15. The temperature sensitivity of organic matter decay in tidal marshes

    NASA Astrophysics Data System (ADS)

    Kirwan, M. L.; Guntenspergen, G. R.; Langley, J. A.

    2014-04-01

    Approximately half of marine carbon sequestration takes place in coastal wetlands, including tidal marshes, where ecosystems accumulate organic matter to build soil elevation and survive sea level rise. The long-term viability of marshes, and their carbon pools, depends in part on how the balance between productivity and decay responds to climate change. Here, we report the sensitivity of soil organic matter decay in tidal marshes to seasonal and latitudinal variations in temperature measured over a 3 year period. We find a moderate increase in decay rate at warmer temperatures (3-6% °C-1, Q10 = 1.3-1.5). Despite the profound differences between microbial metabolism in wetlands and uplands, our results indicate a strong conservation of temperature sensitivity. Moreover, simple comparisons with organic matter production suggest that elevated atmospheric CO2 and warmer temperatures will accelerate carbon accumulation in marsh soils, and enhance their ability to survive sea level rise.

  16. Organic matter in the Saturn system

    NASA Astrophysics Data System (ADS)

    Sagan, C.; Khare, B. N.; Lewis, J. S.

    Theoretical and experimental predictions of the formation (and outgassing) of organic molecules in the outer solar system are compared with Voyager IRIS spectral data for the Titan atmosphere. The organic molecules of Titan are of interest because the species and processes within the atmosphere of that moon may have had analogs in the early earth atmosphere 4 Gyr ago. The spacecraft data confirmed the presence of alkanes, ethane, propane, ethylene, alkynes, acetylene, butadiene, methylacetylene, nitriles, hydrogen cyanide, cyanoacetylene, and cyanogen, all heavier than the dominant CH4. Experimental simulation of the effects of UV photolysis, alpha and gamma ray irradiation, electrical discharges and proton and electron bombardment of similar gas mixtures has shown the best promise for modeling the reactions producing the Titan atmosphere chemicals.

  17. Organic matter in the Saturn system

    NASA Technical Reports Server (NTRS)

    Sagan, C.; Khare, B. N.; Lewis, J. S.

    1984-01-01

    Theoretical and experimental predictions of the formation (and outgassing) of organic molecules in the outer solar system are compared with Voyager IRIS spectral data for the Titan atmosphere. The organic molecules of Titan are of interest because the species and processes within the atmosphere of that moon may have had analogs in the early earth atmosphere 4 Gyr ago. The spacecraft data confirmed the presence of alkanes, ethane, propane, ethylene, alkynes, acetylene, butadiene, methylacetylene, nitriles, hydrogen cyanide, cyanoacetylene, and cyanogen, all heavier than the dominant CH4. Experimental simulation of the effects of UV photolysis, alpha and gamma ray irradiation, electrical discharges and proton and electron bombardment of similar gas mixtures has shown the best promise for modeling the reactions producing the Titan atmosphere chemicals.

  18. Enamel alteration following tooth bleaching and remineralization.

    PubMed

    Coceska, Emilija; Gjorgievska, Elizabeta; Coleman, Nichola J; Gabric, Dragana; Slipper, Ian J; Stevanovic, Marija; Nicholson, John W

    2016-06-01

    The purpose of this study was to compare the effects of professional tooth whitening agents containing highly concentrated hydrogen peroxide (with and without laser activation), on the enamel surface; and the potential of four different toothpastes to remineralize any alterations. The study was performed on 50 human molars, divided in two groups: treated with Opalescence(®) Boost and Mirawhite(®) Laser Bleaching. Furthermore, each group was divided into five subgroups, a control one and 4 subgroups remineralized with: Mirasensitive(®) hap+, Mirawhite(®) Gelleѐ, GC Tooth Mousse™ and Mirafluor(®) C. The samples were analysed by SEM/3D-SEM-micrographs, SEM/EDX-qualitative analysis and SEM/EDX-semiquantitative analysis. The microphotographs show that both types of bleaching cause alterations: emphasized perikymata, erosions, loss of interprizmatic substance; the laser treatment is more aggressive and loss of integrity of the enamel is determined by shearing off the enamel rods. In all samples undergoing remineralization deposits were observed, those of toothpastes based on calcium phosphate technologies seem to merge with each other and cover almost the entire surface of the enamel. Loss of integrity and minerals were detected only in the line-scans of the sample remineralized with GC Tooth Mousse™. The semiquantitative EDX analysis of individual elements in the surface layer of the enamel indicates that during tooth-bleaching with HP statistically significant loss of Na and Mg occurs, whereas the bleaching in combination with a laser leads to statistically significant loss of Ca and P. The results undoubtedly confirm that teeth whitening procedures lead to enamel alterations. In this context, it must be noted that laser bleaching is more aggressive for dental substances. However, these changes are reversible and can be repaired by application of remineralization toothpastes.

  19. Demineralization-remineralization dynamics in teeth and bone.

    PubMed

    Abou Neel, Ensanya Ali; Aljabo, Anas; Strange, Adam; Ibrahim, Salwa; Coathup, Melanie; Young, Anne M; Bozec, Laurent; Mudera, Vivek

    Biomineralization is a dynamic, complex, lifelong process by which living organisms control precipitations of inorganic nanocrystals within organic matrices to form unique hybrid biological tissues, for example, enamel, dentin, cementum, and bone. Understanding the process of mineral deposition is important for the development of treatments for mineralization-related diseases and also for the innovation and development of scaffolds. This review provides a thorough overview of the up-to-date information on the theories describing the possible mechanisms and the factors implicated as agonists and antagonists of mineralization. Then, the role of calcium and phosphate ions in the maintenance of teeth and bone health is described. Throughout the life, teeth and bone are at risk of demineralization, with particular emphasis on teeth, due to their anatomical arrangement and location. Teeth are exposed to food, drink, and the microbiota of the mouth; therefore, they have developed a high resistance to localized demineralization that is unmatched by bone. The mechanisms by which demineralization-remineralization process occurs in both teeth and bone and the new therapies/technologies that reverse demineralization or boost remineralization are also scrupulously discussed. Technologies discussed include composites with nano- and micron-sized inorganic minerals that can mimic mechanical properties of the tooth and bone in addition to promoting more natural repair of surrounding tissues. Turning these new technologies to products and practices would improve health care worldwide.

  20. Demineralization–remineralization dynamics in teeth and bone

    PubMed Central

    Abou Neel, Ensanya Ali; Aljabo, Anas; Strange, Adam; Ibrahim, Salwa; Coathup, Melanie; Young, Anne M; Bozec, Laurent; Mudera, Vivek

    2016-01-01

    Biomineralization is a dynamic, complex, lifelong process by which living organisms control precipitations of inorganic nanocrystals within organic matrices to form unique hybrid biological tissues, for example, enamel, dentin, cementum, and bone. Understanding the process of mineral deposition is important for the development of treatments for mineralization-related diseases and also for the innovation and development of scaffolds. This review provides a thorough overview of the up-to-date information on the theories describing the possible mechanisms and the factors implicated as agonists and antagonists of mineralization. Then, the role of calcium and phosphate ions in the maintenance of teeth and bone health is described. Throughout the life, teeth and bone are at risk of demineralization, with particular emphasis on teeth, due to their anatomical arrangement and location. Teeth are exposed to food, drink, and the microbiota of the mouth; therefore, they have developed a high resistance to localized demineralization that is unmatched by bone. The mechanisms by which demineralization–remineralization process occurs in both teeth and bone and the new therapies/technologies that reverse demineralization or boost remineralization are also scrupulously discussed. Technologies discussed include composites with nano- and micron-sized inorganic minerals that can mimic mechanical properties of the tooth and bone in addition to promoting more natural repair of surrounding tissues. Turning these new technologies to products and practices would improve health care worldwide. PMID:27695330

  1. Loss of nitrogenous dissolved organic matter from small lakes

    USGS Publications Warehouse

    Manny, Bruce A.; Otsuki, Akira

    1981-01-01

    To determine how much organic nitrogen is lost from lakes during winter by natural processes, we collected water in fall and winter from six small lakes (area, 5-822 hectares) and separated organic matter dissolved in the water with n-butanol into three fractions--yellow organic acids, a white precipitate, and aqueous (nonextractable) organic matter. The nitrogen content of each fraction was measured by ultraviolet photolysis. About 25-30% of the yellow acid and white precipitate fractions were lost from the water column in each of the lakes during winter. More than 80% of the organic nitrogen dissolved in the lake water samples was found in the aqueous fraction. We believe the white precipitate is part of the humin material in lake waters because it was relatively insoluble in acidic and alkaline solutions.

  2. Do soils loose phosphorus with dissolved organic matter?

    NASA Astrophysics Data System (ADS)

    Kaiser, K.; Brödlin, D.; Hagedorn, F.

    2014-12-01

    During ecosystem development and soil formation, primary mineral sources of phosphorus are becoming increasingly depleted. Inorganic phosphorus forms tend to be bound strongly to or within secondary minerals, thus, are hardly available to plants and are not leached from soil. What about organic forms of phosphorus? Since rarely studied, little is known on the composition, mobility, and bioavailability of dissolved organic phosphorus. There is some evidence that plant-derived compounds, such as phytate, bind strongly to minerals as well, while microbial compounds, such as nucleotides and nucleic acids, may represent more mobile fractions of soil phosphorus. In some weakly developed, shallow soils, leaching losses of phosphorus seem to be governed by mobile organic forms. Consequently, much of the phosphorus losses observed during initial stages of ecosystem development may be due to the leaching of dissolved organic matter. However, the potentially mobile microbial compounds are enzymatically hydrolysable. Forest ecosystems on developed soils already depleted in easily available inorganic phosphorus are characterized by rapid recycling of organic phosphors. That can reduce the production of soluble forms of organic phosphorus as well as increase the enzymatic hydrolysis and subsequent plant uptake of phosphorus bound within dissolved organic matter. This work aims at giving an outlook to the potential role of dissolved organic matter in the cycling of phosphorus within developing forest ecosystems, based on literature evidence and first results of ongoing research.

  3. Rapid determination of organic matter in spent sulfuric acid

    SciTech Connect

    Petrenko, V.G.; Takhtaeva, A.Ya.; Frolova, R.P.

    1981-01-01

    Ammonium sulfate is produced with the aid of spent sulfuric acid which averages 0.3 to 0.7% (and sometimes up to 2.5%) of carbon in the form of organic impurities. In the saturator, the latter upset the processing conditions and lower the quality (size analysis, etc.) of the ammonium sulfate. A rapid quality control procedure is essential to obtain timely warning of increased organic matter contents in the acid. On the other hand, the standard procedure in current use (TU38-2-3-1-68), based on the oxidation of organic substances with potassium bichromate in an acid medium, takes 3 hr to complete. Observations have revealed a correlation between the color of the acid and its organic impurity contents. On this basis, we have developed a rapid photocolorimetric procedure for determining the organic impurity contents of sulfuric acid, based on the known proportionality between optical density (light absorption) and solute (dye) content. A calibration curve is used to convert optical density readings to organic impurity contents. It should be pointed out that in contrast to the standard procedure, our procedure only determines the concentration of organic matter in solution in the acid. However, the amounts of insoluble organic matter are negligible compared with the amounts in solution and therefore do not affect the final results.

  4. Detection of organic matter in interstellar grains.

    PubMed

    Pendleton, Y J

    1997-06-01

    Star formation and the subsequent evolution of planetary systems occurs in dense molecular clouds, which are comprised, in part, of interstellar dust grains gathered from the diffuse interstellar medium (DISM). Radio observations of the interstellar medium reveal the presence of organic molecules in the gas phase and infrared observational studies provide details concerning the solid-state features in dust grains. In particular, a series of absorption bands have been observed near 3.4 microns (approximately 2940 cm-1) towards bright infrared objects which are seen through large column densities of interstellar dust. Comparisons of organic residues, produced under a variety of laboratory conditions, to the diffuse interstellar medium observations have shown that aliphatic hydrocarbon grains are responsible for the spectral absorption features observed near 3.4 microns (approximately 2940 cm-1). These hydrocarbons appear to carry the -CH2- and -CH3 functional groups in the abundance ratio CH2/CH3 approximately 2.5, and the amount of carbon tied up in this component is greater than 4% of the cosmic carbon available. On a galactic scale, the strength of the 3.4 microns band does not scale linearly with visual extinction, but instead increases more rapidly for objects near the Galactic Center. A similar trend is noted in the strength of the Si-O absorption band near 9.7 microns. The similar behavior of the C-H and Si-O stretching bands suggests that these two components may be coupled, perhaps in the form of grains with silicate cores and refractory organic mantles. The ubiquity of the hydrocarbon features seen in the near infrared near 3.4 microns throughout out Galaxy and in other galaxies demonstrates the widespread availability of such material for incorporation into the many newly forming planetary systems. The similarity of the 3.4 microns features in any organic material with aliphatic hydrocarbons underscores the need for complete astronomical observational

  5. Andic soils : mineralogical effect onto organic matter dynamics, organic matter effect onto mineral dynamics, or both?

    NASA Astrophysics Data System (ADS)

    Basile-Doelsch, Isabelle; Amundson, Ronald; Balesdent, Jérome; Borschneck, Daniel; Bottero, Jean-Yves; Colin, Fabrice; de Junet, Alexis; Doelsch, Emmanuel; Legros, Samuel; Levard, Clément; Masion, Armand; Meunier, Jean-Dominique; Rose, Jérôme

    2014-05-01

    From a strictly mineralogical point of view, weathering of volcanic glass produces secondary phases that are short range ordered alumino-silicates (SRO-AlSi). These are imogolite tubes (2 to 3 nm of diameter) and allophane supposedly spheres (3.5 to 5 nm). Their local structure is composed of a curved gibbsite Al layer and Si tetrahedra in the vacancies (Q0). Proto-imogolites have the same local structure but are roof-shape nanoparticles likely representing the precursors of imogolite and allophanes (Levard et al. 2010). These structures and sizes give to the SRO-AlSi large specific surfaces and high reactivities. In some natural sites, imogolites and allophanes are formed in large quantities. Aging of these phases may lead to the formation of more stable minerals (halloysite, kaolinite and gibbsite) (Torn et al 1997). In natural environments, when the weathering of volcanic glass is associated with the establishment of vegetation, the soils formed are generally andosols. These soils are particularly rich in organic matter (OM), which is explained by the high ability of SRO-AlSi mineral phases to form bonds with organic compounds. In a first order "bulk" approach, it is considered that these bonds strongly stabilize the organic compounds as their mean age can reach more than 10 kyrs in some studied sites (Basile-Doelsch et al. 2005; Torn et al. 1997). However, the structure of the mineral phases present in andosols deserves more attention. Traditionally, the presence in the SRO-AlSi andosols was shown by selective dissolution approaches by oxalate and pyrophosphate. Using spectroscopic methods, mineralogical analysis of SRO-AlSi in andosols samples showed that these mineral phases were neither imogolites nor allophanes as originally supposed, but only less organized structures remained in a state of proto-imogolites (Basile-Doelsch al. 2005 ; Levard et al., 2012). The presence of OM would have an inhibitory effect on the formation of secondary mineral phases, by

  6. Composition of dissolved organic matter in groundwater

    NASA Astrophysics Data System (ADS)

    Longnecker, Krista; Kujawinski, Elizabeth B.

    2011-05-01

    Groundwater constitutes a globally important source of freshwater for drinking water and other agricultural and industrial purposes, and is a prominent source of freshwater flowing into the coastal ocean. Therefore, understanding the chemical components of groundwater is relevant to both coastal and inland communities. We used electrospray ionization coupled with Fourier-transform ion cyclotron resonance mass spectrometry (ESI FT-ICR MS) to examine dissolved organic compounds in groundwater prior to and after passage through a sediment-filled column containing microorganisms. The data revealed that an unexpectedly high proportion of organic compounds contained nitrogen and sulfur, possibly due to transport of surface waters from septic systems and rain events. We matched 292 chemical features, based on measured mass:charge ( m/z) values, to compounds stored in the Kyoto Encyclopedia of Genes and Genomes (KEGG). A subset of these compounds (88) had only one structural isomer in KEGG, thus supporting tentative identification. Most identified elemental formulas were linked with metabolic pathways that produce polyketides or with secondary metabolites produced by plants. The presence of polyketides in groundwater is notable because of their anti-bacterial and anti-cancer properties. However, their relative abundance must be quantified with appropriate analyses to assess any implications for public health.

  7. A marine sink for chlorine in natural organic matter

    NASA Astrophysics Data System (ADS)

    Leri, Alessandra C.; Mayer, Lawrence M.; Thornton, Kathleen R.; Northrup, Paul A.; Dunigan, Marisa R.; Ness, Katherine J.; Gellis, Austin B.

    2015-08-01

    Chloride--the most abundant ion in sea water--affects ocean salinity, and thereby seawater density and ocean circulation. Its lack of reactivity gives it an extremely long residence time. Other halogens are known to be incorporated into marine organic matter. However, evidence of similar transformations of seawater chloride is lacking, aside from emissions of volatile organochlorine by marine algae. Here we report high organochlorine concentrations from 180 to 700 mg kg-1 in natural particulate organic matter that settled into sediment traps at depths between 800 and 3,200 m in the Arabian Sea, taken between 1994 and 1995. X-ray spectromicroscopic imaging of chlorine bonding reveals that this organochlorine exists primarily in concentrated aliphatic forms consistent with lipid chlorination, along with a more diffuse aromatic fraction. High aliphatic organochlorine in particulate material from cultured phytoplankton suggests that primary production is a source of chlorinated organic matter. We also found that particulate algal detritus can act as an organic substrate for abiotic reactions involving Fe2+, H2O2 or light that incorporate chlorine into organic matter at levels up to several grams per kilogram. We conclude that transformations of marine chloride to non-volatile organochlorine through biological and abiotic pathways represent an oceanic sink for this relatively unreactive element.

  8. Pre-biotic organic matter from comets and asteroids.

    PubMed

    Anders, E

    1989-11-16

    Several authors have suggested that comets or carbonaceous asteroids contributed large amounts of organic matter to the primitive Earth, and thus possibly played a vital role in the origin of life. But organic matter cannot survive the extremely high temperatures (>10(4) K) reached on impact, which atomize the projectile and break all chemical bonds. Only fragments small enough to be gently decelerated by the atmosphere--principally meteors of 10(-12)-10(-6) g--can deliver their organic matter intact. The amount of such 'soft-landed' organic carbon can be estimated from data for the infall rate of meteoritic matter. At present rates, only approximately 0.006 g cm-2 intact organic carbon would accumulate in 10(8) yr, but at the higher rates of approximately 4 x 10(9) yr ago, about 20 g cm-2 may have accumulated in the few hundred million years between the last cataclysmic impact and the beginning of life. It may have included some biologically important compounds that did not form by abiotic synthesis on Earth.

  9. Interstellar and Solar System Organic Matter Preserved in Interplanetary Dust

    NASA Technical Reports Server (NTRS)

    Messenger, Scott; Nakamura-Messenger, Keiko

    2015-01-01

    Interplanetary dust particles (IDPs) collected in the Earth's stratosphere derive from collisions among asteroids and by the disruption and outgassing of short-period comets. Chondritic porous (CP) IDPs are among the most primitive Solar System materials. CP-IDPs have been linked to cometary parent bodies by their mineralogy, textures, C-content, and dynamical histories. CP-IDPs are fragile, fine-grained (less than um) assemblages of anhydrous amorphous and crystalline silicates, oxides and sulfides bound together by abundant carbonaceous material. Ancient silicate, oxide, and SiC stardust grains exhibiting highly anomalous isotopic compositions are abundant in CP-IDPs, constituting 0.01 - 1 % of the mass of the particles. The organic matter in CP-IDPs is isotopically anomalous, with enrichments in D/H reaching 50x the terrestrial SMOW value and 15N/14N ratios up to 3x terrestrial standard compositions. These anomalies are indicative of low T (10-100 K) mass fractionation in cold molecular cloud or the outermost reaches of the protosolar disk. The organic matter shows distinct morphologies, including sub-um globules, bubbly textures, featureless, and with mineral inclusions. Infrared spectroscopy and mass spectrometry studies of organic matter in IDPs reveals diverse species including aliphatic and aromatic compounds. The organic matter with the highest isotopic anomalies appears to be richer in aliphatic compounds. These materials also bear similarities and differences with primitive, isotopically anomalous organic matter in carbonaceous chondrite meteorites. The diversity of the organic chemistry, morphology, and isotopic properties in IDPs and meteorites reflects variable preservation of interstellar/primordial components and Solar System processing. One unifying feature is the presence of sub-um isotopically anomalous organic globules among all primitive materials, including IDPs, meteorites, and comet Wild-2 samples returned by the Stardust mission.

  10. Caracterisation of anthropogenic contribution to the coastal fluorescent organic matter

    NASA Astrophysics Data System (ADS)

    El Nahhal, Ibrahim; Nouhi, Ayoub; Mounier, Stéphane

    2015-04-01

    It is known that most of the coastal fluorescent organic matter is of a terrestrial origin (Parlanti, 2000; Tedetti, Guigue, & Goutx, 2010). However, the contribution of the anthropogenic organic matter to this pool is not well defined and evaluated. In this work the monitoring of little bay (Toulon Bay, France) was done in the way to determine the organic fluorescent response during a winter period. The sampling campaign consisted of different days during the month of December, 2014 ( 12th, 15th, 17th, 19th) on 21 different sampling sites for the fluorescence measurements (without any filtering of the samples) and the whole month of December for the bacterial and the turbidity measurements. Excitation Emission Matrices (EEMs) of fluorescence (from 200 to 400 nm and 220 to 420 nm excitation and emission range) were treated by parallel factor analysis (PARAFAC).The parafac analysis of the EEM datasets was conducted using PROGMEEF software in Matlab langage. On the same time that the turbidity and bacterial measurement (particularly the E.Coli concentration) were determined. The results gives in a short time range, information on the the contribution of the anthropogenic inputs to the coastal fluorescent organic matter. In addition, the effect of salinity on the photochemical degradation of the anthropogenic organic matter (especially those from wastewater treatment plants) will be studied to investigate their fate in the water end member by the way of laboratory experiments. Parlanti, E. (2000). Dissolved organic matter fluorescence spectroscopy as a tool to estimate biological activity in a coastal zone submitted to anthropogenic inputs. Organic Geochemistry, 31(12), 1765-1781. doi:10.1016/S0146-6380(00)00124-8 Tedetti, M., Guigue, C., & Goutx, M. (2010). Utilization of a submersible UV fluorometer for monitoring anthropogenic inputs in the Mediterranean coastal waters. Marine Pollution Bulletin, 60(3), 350-62. doi:10.1016/j.marpolbul.2009.10.018

  11. Cycling of dissolved and particulate organic matter at station Aloha: Insights from 13C NMR spectroscopy coupled with elemental, isotopic and molecular analyses

    NASA Astrophysics Data System (ADS)

    Sannigrahi, Poulomi; Ingall, Ellery D.; Benner, Ronald

    2005-08-01

    Compositions of ultrafiltered dissolved organic matter (UDOM) and ultrafiltered particulate organic matter (UPOM) were characterized in samples collected from a depth profile (20-4000 m) in the North Pacific at Station Aloha. 13C Nuclear Magnetic Resonance (NMR) analyses together with δ13C values, carbon/nitrogen (C/N) ratios and molecular characterizations of UDOM and UPOM indicate different bulk chemical compositions and sources for these two size fractions. Carbohydrates and amino acids are the major biomolecules present in UDOM and UPOM. At all depths, UPOM had higher amino acid and lower carbohydrate contents compared to UDOM. UDOM and UPOM samples showed a decrease in the relative contribution of carbohydrates to the total organic carbon with increasing depth, whereas the contributions of lipids increased. Amino acids did not show any clear depth trends for UDOM, but decreased in UPOM. The compositional trends with depth indicate that selective degradation processes, which preferentially remineralize reactive biomolecules such as carbohydrates, affect UDOM and UPOM compositions in the water column. Molecular analyses of carbohydrates and amino acids characterized ˜9% of the C in UDOM and ˜28% of the C in UPOM. Although a relatively small proportion of the total C was characterizable with molecular analyses, the depth trends and the ratio of amino acids to carbohydrates in UPOM and UDOM were similar to those determined by 13C NMR. This suggests that the organic matter fraction characterized by molecular analyses is representative of the molecularly uncharacterized fraction of organic matter. It is postulated that the molecularly uncharacterized fraction is encapsulated or shielded by a hydrolysis-resistant matrix or the individual amino acid and sugar units have been altered to form a chemical entity unrecognizable by the molecular analyses.

  12. Processing of Atmospheric Organic Matter by California Radiation Fogs

    NASA Astrophysics Data System (ADS)

    Collett, J. L.; Youngster, S. B.; Lee, T.; Chang, H.; Herckes, P.

    2005-12-01

    In many environments, organic compounds account for a significant fraction of fine particle mass. Because the lifetimes of accumulation mode aerosol particles are governed largely by interactions with clouds, it is important to understand how organic aerosol particles are processed by clouds and fogs. Recently we have examined the organic composition of radiation fogs in central California as well as how these fogs process organic aerosol particles and soluble organic trace gases. Observations indicate that organic matter is a significant component of the fog droplets, comprising approximately one-third of the total solute mass concentration. Concentrations of total organic carbon (TOC) range from approximately 2 to 41 ppmC. Approximately three-fourths of organic matter is typically found in solution as dissolved organic carbon (DOC). A variety of efforts have been made to characterize the composition of the fog organic matter, including analyses by GC/MS, HPLC, IC, NMR and IR. The most abundant species are typically low molecular weight carboxylic acids, small carbonyls and dicarbonyls, and sugar anhydrides. These species have been observed collectively to account for roughly 20-30 percent of the fog DOC. Dicarboxylic acids, frequently used as model compounds for organic CCN, typically account for only a few percent of the organic carbon, with oxalic acid the most important contributor. A significant portion of the fog DOC appears to be comprised of high molecular weight compounds (> 500 Da). Analyses also reveal the presence of organic molecular markers associated with particles produced by various combustion processes. Comparisons of pre-fog and interstitial aerosol samples reveal differences in the relative particle scavenging efficiencies of the fog drops between organic and elemental carbon and between different types of organic carbon. Measurements using a two-stage fog water collector reveal that organic matter tends to be enriched in smaller fog droplets

  13. Aggregation of organic matter by pelagic tunicates

    SciTech Connect

    Pomeroy, L.R.; Deibel, D.

    1980-07-01

    Three genera of pelagic tunicates were fed concentrates of natural seston and an axenic diatom culture. Fresh and up to 4-day-old feces resemble flocculent organic aggregates containing populations of microorganisms, as described from highly productive parts of the ocean, and older feces resemble the nearly sterile flocculent aggregates which are ubiquitous in surface waters. Fresh feces consist of partially digested phytoplankton and other inclusions in an amorphous gelatinous matrix. After 18 to 36 h, a population of large bacteria develops in the matrix and in some of the remains of phytoplankton contained in the feces. From 48 to 96 h, protozoan populations arise which consume the bacteria and sometimes the remains of the phytoplankton in the feces. Thereafter only a sparse population of microorganisms remains, and the particles begin to fragment. Water samples taken in or below dense populations of salps and doliolids contained greater numbers of flocculent aggregates than did samples from adjacent stations.

  14. Search for Organic Matter in Leonid Meteoroids

    NASA Astrophysics Data System (ADS)

    Rairden, Richard L.; Jenniskens, Peter; Laux, Christophe O.

    Near-ultraviolet 300-410 nm spectra of Leonid meteoroids were obtained in an effort to measure the strong B --> X emission band of the radical CN in Leonid meteor spectra at 387 nm. CN is an expected product of ablation of nitrogen containing organic carbon in the meteoroids as well as a possible product of the aerothermochemistry induced by the kinetic energy of the meteor. A slit-less spectrograph with objective grating was deployed on FISTA during the 1999 Leonid Multi-Instrument Aircraft Campaign. Fifteen first-order UV spectra were captured near the 02:00 UT meteor storm peak on November 18. It is found that neutral iron lines dominate the spectrum, with no clear sign of the CN band. The meteor plasma contains less than one CN molecule per 3 Fe atoms at the observed altitude of about 100 km.

  15. Search for Organic Matter in Leonid Meteoroids

    NASA Technical Reports Server (NTRS)

    Rairden, Richard L.; Jenniskens, Peter; Laux, Christophe O.; DeVincenzi, Donald L. (Technical Monitor)

    2000-01-01

    Near-ultraviolet 300-410 nm spectra of Leonid meteors were obtained in an effort to measure the strong B to X emission band of the radical CN in Leonid meteor spectra at 387 nm. CN is an expected product of ablation of nitrogen containing organic carbon in the meteoroids as well as a possible product of the aerothermochemistry induced by the kinetic energy of the meteor. A slitless spectrograph with objective grating was deployed on FISTA during the 1999 Leonid Multi-Instrument Aircraft Campaign. Fifteen first-order UV spectra were captured near the 02:00 UT meteor storm peak on November 18. It is found that neutral iron lines dominate the spectrum, with no clear sign of the CN band. The meteor plasma contains less than one CN molecule per three Fe atoms at the observed altitude of about 100 km.

  16. Biogeochemistry of dissolved organic matter in an anoxic intertidal creek bank

    NASA Astrophysics Data System (ADS)

    Seidel, Michael; Beck, Melanie; Riedel, Thomas; Waska, Hannelore; Suryaputra, I. G. N. A.; Schnetger, Bernhard; Niggemann, Jutta; Simon, Meinhard; Dittmar, Thorsten

    2014-09-01

    Seawater circulation in permeable coastal sediments is driven by tidal changes in hydraulic gradients. The resulting submarine groundwater discharge is a source of nutrients and dissolved organic matter (DOM) to the water column. Yet, little is known about the cycling of DOM within tidal sediments, because the molecular DOM characterization remains analytically challenging. One technique that can dissect the multitude of molecules in DOM is ultrahigh-resolution Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS). To aim at a high resolution DOM analysis we study the seasonal turnover and marine and terrestrial sources of DOM in an intertidal creek bank of the southern North Sea down to 3 m depth and link the biogeochemical processes to FT-ICR-MS data and the analyses of inorganic porewater chemistry, δ13C of solid-phase extracted dissolved organic carbon (SPE-DOC), dissolved black carbon (DBC) and dissolved carbohydrates (DCHO). Increasing concentrations of dissolved Fe, Mn, P, total alkalinity, dissolved nitrogen, DOC and a concomitant decrease of sulfate along the seawater circulation path from the upper tidal flat to the tidal flat margin indicate continuous microbial activity. The relative increase of Si concentrations, unsaturated aliphatics, peptide molecular formulae and isotopically more 13C-enriched SPE-DOC towards the tidal flat margin suggests that remineralization processes mobilize DOM from buried algal (diatoms) and microbial biomass. Porewater in sediments <100 cm depth contains 13C-depleted SPE-DOC and highly unsaturated compounds which are probably derived from eroded peats, suggesting rapid removal of bioavailable marine DOM such as DCHO from the water column and selective enrichment of terrestrial DOM. DBC concentrations are highest in the discharging porewater close to the tidal creek suggesting that the intertidal flat is an important DBC source to the coastal ocean. Porewater DOM accumulating at the low water line is

  17. Lyophilization and Reconstitution of Reverse Osmosis Concentrated Natural Organic Matter

    EPA Science Inventory

    Disinfection by-product (DBP) research can be complicated by difficulties in shipping large water quantities and changing natural organic matter (NOM) characteristics over time. To overcome these issues, it is advantageous to have a reliable method for concentrating and preservin...

  18. Quenching and Sensitizing Fullerene Photoreactions by Natural Organic Matter

    EPA Science Inventory

    Effects of natural organic matter (NOM) on the photoreaction kinetics of fullerenes (i.e., C60 and fullerenol) were investigated using simulated sunlight and monochromatic radiation (365 nm). NOM from several sources quenched (slowed) the photoreaction of C60 aggregates in water ...

  19. Lyophilization and Reconstitution of Reverse Osmosis Concentrated Natural Organic Matter

    EPA Science Inventory

    Disinfection by-product (DBP) research can be complicated by difficulties in shipping large water quantities and changing natural organic matter (NOM) characteristics over time. To overcome these issues, it is advantageous to have a reliable method for concentrating and preservin...

  20. Photoproduction of Carbon Monoxide from Natural Organic Matter

    EPA Science Inventory

    Pioneering studies by Valentine provided early kinetic results that used carbon monoxide (CO) production to evaluate the photodecomposition of aquatic natural organic matter (NOM) . (ES&T 1993 27 409-412). Comparatively few kinetic studies have been conducted of the photodegradat...

  1. Soil organic matter as sole indicator of soil degradation

    Treesearch

    S.E. Obalum; G.U. Chibuike; S. Peth; Ying Ouyang

    2017-01-01

    Soil organic matter (SOM) is known to play vital roles in the maintenance and improvement of many soil properties and processes. These roles, which largely influence soil functions, are a pool of specific contributions of different components of SOM. The soil functions, in turn, normally define the level of soil degradation, viewed as quantifiable temporal changes in a...

  2. Photoproduction of Carbon Monoxide from Natural Organic Matter

    EPA Science Inventory

    Pioneering studies by Valentine provided early kinetic results that used carbon monoxide (CO) production to evaluate the photodecomposition of aquatic natural organic matter (NOM) . (ES&T 1993 27 409-412). Comparatively few kinetic studies have been conducted of the photodegradat...

  3. Quenching and Sensitizing Fullerene Photoreactions by Natural Organic Matter

    EPA Science Inventory

    Effects of natural organic matter (NOM) on the photoreaction kinetics of fullerenes (i.e., C60 and fullerenol) were investigated using simulated sunlight and monochromatic radiation (365 nm). NOM from several sources quenched (slowed) the photoreaction of C60 aggregates in water ...

  4. Calculation of the enthalpy of formation of coal organic matter

    SciTech Connect

    A.M. Gyul'maliev; M.Ya. Shpirt

    2008-10-15

    The enthalpy of formation for the organic matter of coals in the coal rank series was calculated from the heat of the complete combustion reaction. Three variants were considered in which the experimental heating values and the values found from the correlation equation or calculated using the Mendeleev formula were taken as the heat of the complete combustion of coals.

  5. Organic matter in a coal ball: Peat or coal?

    USGS Publications Warehouse

    Hatcher, P.G.; Lyons, P.C.; Thompson, C.L.; Brown, F.W.; Maciel, G.E.

    1982-01-01

    Chemical analyses of morphologically preserved organic matter in a Carboniferous coal ball reveal that the material is coalified to a rank approximately equal to that of the surrounding coal. Hence, the plant tissues in the coal ball were chemically altered by coalification processes and were not preserved as peat. Copyright ?? 1982 AAAS.

  6. Advanced solid-state NMR spectroscopy of natural organic matter

    USDA-ARS?s Scientific Manuscript database

    Solid-state NMR is essential for the characterization of natural organic matter (NOM) and is gaining importance in geosciences and environmental sciences. This review is intended to highlight advanced solid-state NMR techniques, especially the systematic approach to NOM characterization, and their ...

  7. The Relationship Between Dissolved Organic Matter Composition and Organic Matter Optical Properties in Freshwaters

    NASA Astrophysics Data System (ADS)

    Aiken, G.; Spencer, R. G.; Butler, K.

    2010-12-01

    Dissolved organic matter (DOM) chemistry and flux are potentially useful, albeit, underutilized, indicators of watershed characteristics, climate influences on watershed hydrology and soils, and changes associated with resource management. Source materials, watershed geochemistry, oxidative processes and hydrology exert strong influences on the nature and reactivity of DOM in aquatic systems. The molecules that comprise DOM, in turn, control a number of environmental processes important for ecosystem function including light penetration and photochemistry, microbial activity, mineral dissolution/precipitation, and the transport and reactivity of hydrophobic compounds and metals (e.g. Hg). In particular, aromatic molecules derived from higher plants exert strong controls on aquatic photochemistry, and on the transport and biogeochemistry of metals. Assessment of DOM composition and transport, therefore, can provide a basis for understanding watershed processes and biogeochemistry of rivers and streams. Here we present results of multi-year studies designed to assess the seasonal and spatial variability of DOM quantity and quality for 57 North American Rivers. DOM concentrations and composition, based on DOM fractionation on XAD resins, ultraviolet (UV)/visible absorption and fluorescence spectroscopic analyses, and specific compound analyses, varied greatly both between sites and seasonally within a given site. DOM in these rivers exhibited a wide range of concentration (<80 to >4000 µM C* L-1) and specific ultra-violet absorbance at 254 nm (SUVA254) (0.6 to 5 L *mg C-1 *m-1), an optical measurement that is an indicator of aromatic carbon content. In almost all systems, UV absorbance measured at specific wavelengths (e.g. 254 nm) correlated strongly with DOM and hydrophobic organic acid (HPOA) content (aquatic humic substances). The relationships between dissolved organic carbon (DOC) concentration and absorbance for the range of systems were quite variable due to

  8. CHROMOPHORIC DISSOLVED ORGANIC MATTER (CDOM) DERIVED FROM DECOMPOSITION OF VARIOUS VASCULAR PLANT AND ALGAL SOURCES

    EPA Science Inventory

    Chromophoric dissolved organic (CDOM) in aquatic environments is derived from the microbial decomposition of terrestrial and microbial organic matter. Here we present results of studies of the spectral properties and photoreactivity of the CDOM derived from several organic matter...

  9. Organic and Inorganic Matter in Louisiana Coastal Waters: Vermilion, Atchafalaya, Terrebonne, Barataria, and Mississippi Regions.

    EPA Science Inventory

    Chromophoric dissolved organic matter (CDOM) spectral absorption, dissolved organic carbon (DOC) concentration, and the particulate fraction of inorganic (PIM) and organic matter (POM) were measured in Louisiana coastal waters at Vermilion, Atchafalaya, Terrebonne, Barataria, and...

  10. CHROMOPHORIC DISSOLVED ORGANIC MATTER (CDOM) DERIVED FROM DECOMPOSITION OF VARIOUS VASCULAR PLANT AND ALGAL SOURCES

    EPA Science Inventory

    Chromophoric dissolved organic (CDOM) in aquatic environments is derived from the microbial decomposition of terrestrial and microbial organic matter. Here we present results of studies of the spectral properties and photoreactivity of the CDOM derived from several organic matter...

  11. Hydroxyapatite-anchored dendrimer for in situ remineralization of human tooth enamel.

    PubMed

    Wu, Duo; Yang, Jiaojiao; Li, Jiyao; Chen, Liang; Tang, Bei; Chen, Xingyu; Wu, Wei; Li, Jianshu

    2013-07-01

    In situ remineralization of hydroxyapatite (HA) on human tooth enamel surface induced by organic matrices is of great interest in the fields of material science and stomatology. In order to mimic the organic matrices induced biomineralization process in developing enamel and enhance the binding strength at the remineralization interface, carboxyl-terminated poly(amido amine) (PAMAM-COOH)-alendronate (ALN) conjugate (ALN-PAMAM-COOH) was synthesized and characterized. PAMAM-COOH has a highly ordered architecture and is capable of promoting the HA crystallization process. ALN is conjugated on PAMAM-COOH due to its specific adsorption on HA (the main component of tooth enamel), resulting in increased binding strength which is tight enough to resist phosphate buffered saline (PBS) rinsing as compared with that of PAMAM-COOH alone. While incubated in artificial saliva, ALN-PAMAM-COOH could induce in situ remineralization of HA on acid-etched enamel, and the regenerated HA has the nanorod-like crystal structure similar to that of human tooth enamel. The hardness of acid-etched enamel samples treated by ALN-PAMAM-COOH can recover up to 95.5% of the original value with strong adhesion force. In vivo experiment also demonstrates that ALN-PAMAM-COOH is effective in repairing acid-etched enamel in the oral cavity. Overall, these results suggest that ALN-PAMAM-COOH is highly promising as a restorative biomaterial for in situ remineralization of human tooth enamel. Copyright © 2013 Elsevier Ltd. All rights reserved.

  12. Molecular characterization of soil organic matter: a historic overview

    NASA Astrophysics Data System (ADS)

    Kögel-Knabner, Ingrid; Rumpel, Cornelia

    2014-05-01

    The characterization of individual molecular components of soil organic matter started in the early 19th century, but proceeded slowly. The major focus at this time was on the isolation and differentiation of different humic and fulvic acid fractions, which were considered to have a defined chemical composition and structure. The isolation and structural anlysis of specific individual soil organic matter components became more popular in the early 20th century. In 1936 40 different individual compounds had been isolated and a specific chemical strucutre had been attributed. These structural attributions were confirmed later for some, but not all of these individual compounds. In the 1950 much more individual compounds could be isolated and characterized, using complicated and time consuming chromatography. It became obvious that soil also contains a number of compounds of microbial origin, such as e.g., amino sugars and lipids. With the improvement of chrmoatographic separation techniques and the use of gas chromatography in combination with thin layerchromatography in the 1960 hundreds of individual compounds have been isolated and identified, most of them after chemical degradation of humic or fulvic acids. The chemical degradative techniques were amended with analytical pyrolysis in the 1970s. More and more, bulk soil organic matter was analyzed with these techniques and the advent of solid-stae 13C NMR spectroscopy around the 1980s allowed for the characterization of the composition of bulk soil organic matter. The gas chromatographic separation of organic matter can nowadays be combined with specific detectors, such that specific attributes ofindividual molecules can be analyzed, e.g. the radiocarbon content or the stable isotope composition.

  13. Organic compounds in the particulate matter from burning organic soils

    Treesearch

    Charles K. McMahon; Jerry D. White; Skevos N. Tsoukalas

    1985-01-01

    This paper is directed to people interested in the environmental impact of natural emissions. Natural emissions are common and contribute significantly to tropospheric background levels. Several million hectares of the United States are covered by organic soils. During droughts, these soils can ignite and support slow combustion which often persists for weeks causing...

  14. Organic matter variations in transgressive and regressive shales

    USGS Publications Warehouse

    Pasley, M.A.; Gregory, W.A.; Hart, G.F.

    1991-01-01

    Organic matter in the Upper Cretaceous Mancos Shale adjacent to the Tocito Sandstone in the San Juan Basin of New Mexico was characterized using organic petrology and organic geochemistry. Differences in the organic matter found in these regressive and transgressive offshore marine sediments have been documented and assessed within a sequence stratigraphic framework. The regressive Lower Mancos Shale below the Tocito Sandstone contains abundant well preserved phytoclasts and correspondingly low hydrogen indices. Total organic carbon values for the regressive shale are low. Sediments from the transgressive systems tract (Tocito Sandstone and overlying Upper Mancos Shale) contain less terrestrially derived organic matter, more amorphous non-structured protistoclasts, higher hydrogen indices and more total organic carbon. Advanced stages of degradation are characteristic of the phytoclasts found in the transgressive shale. Amorphous material in the transgressive shale fluoresces strongly while that found in the regressive shale is typically non-fluorescent. Data from pyrolysis-gas chromatography confirm these observations. These differences are apparently related to the contrasting depositional styles that were active on the shelf during regression and subsequent transgression. It is suggested that data from organic petrology and organic geochemistry provide greater resolution in sedimentologic and stratigraphic interpretations, particularly when working with basinward, fine-grained sediments. Petroleum source potential for the regressive Lower Mancos Shale below the Tocito Sandstone is poor. Based on abundant fluorescent amorphous material, high hydrogen indices, and high total organic carbon, the transgressive Upper Mancos Shale above the Tocito Sandstone possesses excellent source potential. This suggests that appreciable source potential can be found in offshore, fine-grained sediments of the transgressive systems tract below the condensed section and associated

  15. The export and fate of organic matter in the ocean: New constraints from combining satellite and oceanographic tracer observations

    NASA Astrophysics Data System (ADS)

    DeVries, Tim; Weber, Thomas

    2017-03-01

    The ocean's biological pump transfers carbon from the surface euphotic zone into the deep ocean, reducing the atmospheric CO2 concentration. Despite its climatic importance, there are large uncertainties in basic metrics of the biological pump. Previous estimates of the strength of the biological pump, as measured by the amount of organic carbon exported from the euphotic zone, range from about 4 to 12 Pg C yr-1. The fate of exported carbon, in terms of how efficiently it is transferred into the deep ocean, is even more uncertain. Here we present a new model of the biological pump that assimilates satellite and oceanographic tracer observations to constrain rates and patterns of organic matter production, export, and remineralization in the ocean. The data-assimilated model predicts a global particulate organic carbon (POC) flux out of the euphotic zone of ˜9 Pg C yr-1. The particle export ratio (the ratio of POC export to net primary production) is highest at high latitudes and lowest at low latitudes, but low-latitude export is greater than predicted by previous models, in better agreement with observed patterns of long-term carbon export. Particle transfer efficiency (Teff) through the mesopelagic zone is controlled by temperature and oxygen, with highest Teff for high-latitude regions and oxygen minimum zones. In contrast, Teff in the deep ocean (below 1000 m) is controlled by particle sinking speed, with highest deep ocean Teff below the subtropical gyres. These results emphasize the utility of both remote sensing and oceanographic tracer observations for constraining the operation of the biological pump.

  16. Preservation of organic matter on Mars by sulfur

    NASA Astrophysics Data System (ADS)

    Eigenbrode, J. L.; Steele, A.; Summons, R. E.; McAdam, A.; Sutter, B.; Franz, H. B.; Freissinet, C.; Millan, M.; Glavin, D. P.; Szopa, C.; Conrad, P. G.; Mahaffy, P. R.

    2016-12-01

    Deltaic-lacustrine mudstones at Pahrump Hills, Gale Crater, Mars yielded a variety of sulfur-containing volatiles upon heating to 500-860°C, as detected by the Sample Analysis at Mars (SAM) instrument onboard the Curiosity rover. The detection of organosulfur compounds comprising thiophenes, dimethylsulfide and thiols by gas chromatography-mass spectrometry and evolved gas analyses, together with aromatic and other hydrocarbon molecules with distributions specific to the sample (i.e., not from the SAM background) indicate that some or all of these organic fragments released at high temperatures are indigenous to the mudstones. The organosulfur compounds are most likely derived from sulfur organics in the sediments. However, there is a possibility that sulfurization of some organic fragments occurred in the oven. On Earth, sulfurization of organic matter is a key process that aids preservation over geological time-scales. This is because it reduces reactive functional groups and adds cross links between small unstable molecules thereby converting them into recalcitrant macromolecules. Sulfurization of organic materials prior to deposition and during early diagenesis may have been a key mechanism responsible for organic matter preservation in the Murray formation mudstones. Sulfur-bearing organics have also been observed in carbonaceous meteorites and there is indication of their presence in the Tissint martian meteorite. A quantitative assessment of organosulfur compounds relative to their non-organic counterparts will be presented for the Murray formation mudstones analyzed by SAM and meteorites analyzed in the laboratory under similar analytical conditions.

  17. Production of fluorescent dissolved organic matter in Arctic Ocean sediments

    PubMed Central

    Chen, Meilian; Kim, Ji-Hoon; Nam, Seung-Il; Niessen, Frank; Hong, Wei-Li; Kang, Moo-Hee; Hur, Jin

    2016-01-01

    Little is known about the production of fluorescent dissolved organic matter (FDOM) in the anoxic oceanic sediments. In this study, sediment pore waters were sampled from four different sites in the Chukchi-East Siberian Seas area to examine the bulk dissolved organic carbon (DOC) and their optical properties. The production of FDOM, coupled with the increase of nutrients, was observed above the sulfate-methane-transition-zone (SMTZ). The presence of FDOM was concurrent with sulfate reduction and increased alkalinity (R2 > 0.96, p < 0.0001), suggesting a link to organic matter degradation. This inference was supported by the positive correlation (R2 > 0.95, p < 0.0001) between the net production of FDOM and the modeled degradation rates of particulate organic carbon sulfate reduction. The production of FDOM was more pronounced in a shallow shelf site S1 with a total net production ranging from 17.9 to 62.3 RU for different FDOM components above the SMTZ depth of ca. 4.1 mbsf, which presumably underwent more accumulation of particulate organic matter than the other three deeper sites. The sediments were generally found to be the sources of CDOM and FDOM to the overlying water column, unearthing a channel of generally bio-refractory and pre-aged DOM to the oceans. PMID:27982085

  18. Production of fluorescent dissolved organic matter in Arctic Ocean sediments.

    PubMed

    Chen, Meilian; Kim, Ji-Hoon; Nam, Seung-Il; Niessen, Frank; Hong, Wei-Li; Kang, Moo-Hee; Hur, Jin

    2016-12-16

    Little is known about the production of fluorescent dissolved organic matter (FDOM) in the anoxic oceanic sediments. In this study, sediment pore waters were sampled from four different sites in the Chukchi-East Siberian Seas area to examine the bulk dissolved organic carbon (DOC) and their optical properties. The production of FDOM, coupled with the increase of nutrients, was observed above the sulfate-methane-transition-zone (SMTZ). The presence of FDOM was concurrent with sulfate reduction and increased alkalinity (R(2) > 0.96, p < 0.0001), suggesting a link to organic matter degradation. This inference was supported by the positive correlation (R(2) > 0.95, p < 0.0001) between the net production of FDOM and the modeled degradation rates of particulate organic carbon sulfate reduction. The production of FDOM was more pronounced in a shallow shelf site S1 with a total net production ranging from 17.9 to 62.3 RU for different FDOM components above the SMTZ depth of ca. 4.1 mbsf, which presumably underwent more accumulation of particulate organic matter than the other three deeper sites. The sediments were generally found to be the sources of CDOM and FDOM to the overlying water column, unearthing a channel of generally bio-refractory and pre-aged DOM to the oceans.

  19. Production of fluorescent dissolved organic matter in Arctic Ocean sediments

    NASA Astrophysics Data System (ADS)

    Chen, Meilian; Kim, Ji-Hoon; Nam, Seung-Il; Niessen, Frank; Hong, Wei-Li; Kang, Moo-Hee; Hur, Jin

    2016-12-01

    Little is known about the production of fluorescent dissolved organic matter (FDOM) in the anoxic oceanic sediments. In this study, sediment pore waters were sampled from four different sites in the Chukchi-East Siberian Seas area to examine the bulk dissolved organic carbon (DOC) and their optical properties. The production of FDOM, coupled with the increase of nutrients, was observed above the sulfate-methane-transition-zone (SMTZ). The presence of FDOM was concurrent with sulfate reduction and increased alkalinity (R2 > 0.96, p < 0.0001), suggesting a link to organic matter degradation. This inference was supported by the positive correlation (R2 > 0.95, p < 0.0001) between the net production of FDOM and the modeled degradation rates of particulate organic carbon sulfate reduction. The production of FDOM was more pronounced in a shallow shelf site S1 with a total net production ranging from 17.9 to 62.3 RU for different FDOM components above the SMTZ depth of ca. 4.1 mbsf, which presumably underwent more accumulation of particulate organic matter than the other three deeper sites. The sediments were generally found to be the sources of CDOM and FDOM to the overlying water column, unearthing a channel of generally bio-refractory and pre-aged DOM to the oceans.

  20. Natural organic matter properties in Swedish agricultural streams

    NASA Astrophysics Data System (ADS)

    Bieroza, Magdalena; Kyllmar, Katarina; Bergström, Lars; Köhler, Stephan

    2017-04-01

    The following paper shows natural organic matter (NOM) properties of stream water samples collected from 8 agricultural streams and 12 agricultural observational fields in Sweden. The catchments and observational fields cover a broad range of environmental (climate, soil type), land use and water quality (nutrient and concentrations, pH, alkalinity) characteristics. Stream water samples collected every two weeks within an ongoing Swedish Monitoring Programme for Agriculture have been analysed for total/dissolved organic carbon, absorbance and fluorescence spectroscopy. A number of quantitative and qualitative spectroscopic parameters was calculated to help to distinguish between terrestrially-derived, refractory organic material and autochthonous, labile material indicative of biogeochemical transformations of terrestrial NOM and recent biological production. The study provides insights into organic matter properties and carbon budgets in agricultural streams and improves understanding of how agricultural catchments transform natural and anthropogenic fluxes of organic matter and nutrients. The insights from the grab sampling are supported by high-frequency turbidity, fulvic-like and tryptophan-like fluorescence measurements with in situ optical sensor.

  1. Cumulative effects of biochar, mineral and organic fertilizers on soil organic matter

    NASA Astrophysics Data System (ADS)

    Plaza, César; López-de-Sá, Esther G.; Gascó, Gabriel; Méndez, Ana; Zaccone, Claudio

    2016-04-01

    We investigated the effect of three consecutive annual applications of biochar at rates of 0 and 20 t ha-1, in a factorial combination with a mineral fertilizer (NPK and nitrosulfate) and two types of organic amendment (municipal solid waste compost and sewage sludge), on soil organic matter in a field experiment under Mediterranean conditions. Biochar increased significantly soil organic C content and C/N ratio. In biochar-amended soils, soil organic C increased significantly with the addition of municipal solid waste compost and sewage sludge. To capture organic matter protection mechanisms related to aggregation and mineral interaction, the soil samples will be fractionated into free (unprotected), intra-macroaggregate, intra-microaggregate, and mineral-associated organic matter pools, and the isolated fractions will be subjected to further chemical and spectroscopic analysis.

  2. Pre-biotic organic matter from comets and asteroids

    NASA Technical Reports Server (NTRS)

    Anders, Edward

    1989-01-01

    Only meteoritic fragments small enough to be gently decelerated by the atmosphere (10 to the -12th g to 10 to the -6th g) can deliver organic matter intact. The amount of such 'soft-landed' organic carbon can be estimated from data for the infall rate of meteoritic matter. At present rates, only about 0.0006 g/sq cm intact organic carbon would accumulate in 100 million years, but at the higher rates of about four billion yr ago, about 20 g/sq cm may have accumulated in the few hundred million years between the last cataclysmic impact and the beginning of life. It may have included some biologically important compounds that did not form by abiotic synthesis on earth.

  3. Bacterial biomarkers thermally released from dissolved organic matter

    USGS Publications Warehouse

    Greenwood, P.F.; Leenheer, J.A.; McIntyre, C.; Berwick, L.; Franzmann, P.D.

    2006-01-01

    Hopane biomarker products were detected using microscale sealed vessel (MSSV) pyrolysis gas chromatography-mass spectrometry (GC-MS) analysis of dissolved organic matter from natural aquatic systems colonised by bacterial populations. MSSV pyrolysis can reduce the polyhydroxylated alkyl side chain of bacteriohopanepolyols, yielding saturated hopane products which are more amenable to GC-MS detection than their functionalised precursors. This example demonstrates how the thermal conditions of MSSV pyrolysis can reduce the biologically-inherited structural functionality of naturally occurring organic matter such that additional structural fragments can be detected using GC methods. This approach complements traditional analytical pyrolysis methods by providing additional speciation information useful for establishing the structures and source inputs of recent or extant organic material. ?? 2006.

  4. Pre-biotic organic matter from comets and asteroids

    NASA Technical Reports Server (NTRS)

    Anders, Edward

    1989-01-01

    Only meteoritic fragments small enough to be gently decelerated by the atmosphere (10 to the -12th g to 10 to the -6th g) can deliver organic matter intact. The amount of such 'soft-landed' organic carbon can be estimated from data for the infall rate of meteoritic matter. At present rates, only about 0.0006 g/sq cm intact organic carbon would accumulate in 100 million years, but at the higher rates of about four billion yr ago, about 20 g/sq cm may have accumulated in the few hundred million years between the last cataclysmic impact and the beginning of life. It may have included some biologically important compounds that did not form by abiotic synthesis on earth.

  5. Application of fluoride iontophoresis to improve remineralization.

    PubMed

    Kim, H E; Kwon, H K; Kim, B I

    2009-10-01

    Iontophoresis is generally used to maximize the therapeutic action of drugs in medicine. This technique can be used to improve the remineralization effect of topical fluoride applications in dentistry. The aim of this study was to compare the remineralization effect of fluoride iontophoresis (FI) with the conventional fluoride application (CFA) method in vitro. Sixty bovine enamel specimens were divided into three groups: no fluoride treatment, CFA and FI. Fluoride was applied to the demineralized specimens for 4 min in each experimental group. The types of fluoride system used for application were 1.23% acidulated phosphate fluoride gel (12 300 p.p.m. F, pH 3.5) and 2% sodium fluoride solution (9050 p.p.m. F, pH 7) in the experimental groups. All the specimens were then placed in a remineralizing solution for 24 h. This cycle was repeated five times. An iontophoresis device (0.4 mA, 12 V) was used in the FI groups. The efficacy of this technique was evaluated by measuring changes in the surface microhardness and lesion depth of the specimens using confocal laser scanning microscope (CLSM). Data were analysed using anova and Tukey's post hoc test (P < 0.05). Although the FI groups showed higher DeltaVHN than the CFA groups, there were no significant differences between these fluoride application methods (P > 0.05). When the lesion depth was measured using CLSM imaging, there was also no significant difference between the FI and CFA groups (P > 0.05). In conclusion, FI was not significantly superior to CFA in terms of the remineralization effect.

  6. Organic matter subducted to the seasonal thermocline supports summertime heterotrophy in the lower euphotic zone of the North Atlantic subtropical gyre

    NASA Astrophysics Data System (ADS)

    Chen, H.

    2015-12-01

    In the oligotrophic subtropical gyre of the North Atlantic, summertime surface drawdown of dissolved inorganic carbon (DIC) and build-up of oxygen (O2) in the absence of nutrients to support primary productivity has been an unresolved puzzle for decades. We use 4 years of biogeochemical data from profiling floats in the northwestern subtropical North Atlantic and 24 years of bottle samples from the BATS timeseries to address this puzzle. We show that oxygen-rich, low-nitrate surface waters are subducted into the seasonal thermocline after the spring bloom. These waters are trapped on isopyncals that are progressively displaced downward over the season. Because of this downward displacement, a 50-100m depth-integrated O2 anomaly appears at an average rate of 1.64 ± 0.60 mol/m2 from May to October. Similarly and apparent nitrate loss occurs at an average rate of -0.028 ± 0.022 mol/m2. Organic matter is also subducted to these isopycnals and its remineralization counters the tendencies towards oxygen build-up and nitrate loss in the lower euphotic zone. This compensation, however, is incomplete (70-80%). The result is a positive rate of change in the O2 anomaly from May to October (0.32 ± 0.15 mol/m2) despite net heterotrophy. For Bermuda, 30-50% of positive net community production (NCP) within the mixed layer could be supported by vertical supply of the nutrients remineralized at 50-100m.

  7. Nature of particulate organic matter in the River Indus, Pakistan

    NASA Astrophysics Data System (ADS)

    Ittekkot, Venugopalan; Arain, Rafee

    1986-08-01

    Suspended sediments from the Indus River collected during 1981 through 1983 were analyzed for POC and its constituent fractions including amino acids, amino sugars and sugars. Percentage of POC decreased with increasing suspended matter concentrations, which suggested dilution of organic matter by mineral matter. The concentrations of amino acids, amino sugars and sugars varied, respectively, between 180 and 2000 μg/l, 5 and 125 μg/l, and 60 and 1100 μg/l. Their contributions to POC varied between 2 and 60% for amino acids and amino sugars, and between 2 and 15% for sugars. They were high during low sediment discharge (February to June), and low during high sediment discharge (August and September). Suspended sediments associated with high sediment discharge periods were characterized by low ratios of: (i) aspartic acid:β-alanine (ii) glutamic acid:γ-aminobutyric acid (iii) amino acids:amino sugars (iv) hexoses:pentoses. These and the relative distribution pattern of the monosaccharides such as galactose, arabinose, mannose and xylose indicated that, not only dilution, but also differences in the sources and processes affect the POC transport in the Indus River. These result in transport of biodegraded organic matter during high sediment discharge periods: this appears to be common to other major rivers of the region, with depositional centers in deep sea areas. These rivers, with their high sediment loads, could contribute up to 8 to 11% of the global annual organic carbon burial in marine sediments.

  8. Soil Organic Matter Content Effects on Dermal Pesticide ...

    EPA Pesticide Factsheets

    Agricultural landscapes serve as active amphibian breeding grounds despite their seemingly poor habitat value. Activity of adults and dispersal of metamorphs to and from agricultural ponds occurs in most species from spring through late summer or early fall, a time that coincides with pesticide applications on farm fields and crops. In terrestrial landscapes, dermal contact with contaminated soil and plant matter may lead to bioconcentration as well as lethal and sublethal effects in amphibians.Although the physiological structure of the amphibian dermis may facilitate pesticide uptake, soil properties may ultimately dictate bioavailability of pesticides in terrestrial habitats. The organic matter fraction of soil readily binds to pesticides, potentially decreasing the availability of pesticides adhering to biological matter. Soil partition coefficient organic carbon content and soil-specific Koc values may be important to indicating pesticide bioavailability and potential bioconcentration in amphibians. Our study was designed to evaluate dermal uptake of five pesticide active ingredients on either high or low organic matter soils. We predicted that amphibian body burdens would be a function of soil carbon content or Koc. with greater bioconcentration in individuals exposed to pesticides on sa

  9. A comparison of soil organic matter physical fractionation methods

    NASA Astrophysics Data System (ADS)

    Duddigan, Sarah; Alexander, Paul; Shaw, Liz; Collins, Chris

    2017-04-01

    Selecting a suitable physical fractionation to investigate soil organic matter dynamics from the plethora that are available is a difficult task. An initial investigation of four different physical fractionation methods was conducted (i) Six et al. (2002); (ii) Zimmermann et al. (2007); (iii) Sohi et al. (2001); and (iv) Plaza et al. (2013). Soils used for this were from a long-term organic matter field plot study where a sandy loam soil was subjected to the following treatments: Peat (Pt), Horse Manure (H), Garden Compost (GCf), Garden Compost at half rate (GCh), and a bare plot control (BP). Although each of these methods involved the isolation of unique fractions, in the interest of comparison, each fraction was categorised as either being (i) physically protected (i.e. in aggregates); (ii) chemically protected (such as in organo-mineral complexes); or (iii) unprotected by either of these mechanisms (so-called 'free' organic matter). Regardless of the fractionation method used, a large amount of the variation in total C contents of the different treated soils is accounted for by the differences in unprotected particulate organic matter. When comparing the methods to one another there were no consistent differences in carbon content in the physically protected, chemically protected, or unprotected fractions as operationally defined across all the five organic matter treatments. Therefore fractionation method selection, for this research, was primarily driven by the practicalities of conducting each method in the lab. All of the methods tested had their limitations, for use in this research. This is not a criticism of the methods themselves but largely a result of the lack of suitability for these particular samples. For example, samples that contain a lot of gravel can lead to problems for methods that use size distribution for fractionation. Problems can also be encountered when free particulate organic matter contributes a large proportion of the sample

  10. Remineralization of Demineralized Enamel via Calcium Phosphate Nanocomposite

    PubMed Central

    Weir, M.D.; Chow, L.C.; Xu, H.H.K.

    2012-01-01

    Secondary caries remains the main problem limiting the longevity of composite restorations. The objective of this study was to investigate the remineralization of demineralized human enamel in vitro via a nanocomposite containing nanoparticles of amorphous calcium phosphate (NACP). NACP were synthesized by a spray-drying technique and incorporated into a dental resin. First, caries-like subsurface enamel lesions were created via an acidic solution. Then, NACP nanocomposite or a commercial fluoride-releasing control composite was placed on the demineralized enamel, along with control enamel without a composite. These specimens were then treated with a cyclic demineralization/remineralization regimen for 30 days. Quantitative microradiography showed typical enamel subsurface demineralization before cyclic demineralization/remineralization treatment, and significant remineralization in enamel under the NACP nanocomposite after the demineralization/remineralization treatment. The NACP nanocomposite had the highest enamel remineralization (mean ± SD; n = 6) of 21.8 ± 3.7%, significantly higher than the 5.7 ± 6.9% for fluoride-releasing composite (p < 0.05). The enamel group without composite had further demineralization of −26.1 ± 16.2%. In conclusion, a novel NACP nanocomposite was effective in remineralizing enamel lesions in vitro. Its enamel remineralization was 4-fold that of a fluoride-releasing composite control. Combined with the good mechanical and acid-neutralization properties reported earlier, the new NACP nanocomposite is promising for remineralization of demineralized tooth structures. PMID:22933607

  11. Loss of organic matter from riverine particles in deltas

    SciTech Connect

    Keil, R.G.; Quay, P.D.; Richey, J.E.

    1997-04-01

    In order to examine the transport and burial of terrigenous organic matter along the coastal zones of large river systems, we assessed organic matter dynamics in coupled river/delta systems using mineral surface area as a conservative tracer for discharged riverine particulate organic matter (POM). Most POM in the rivers studied (n = 6) is tightly associated with suspended mineral materiaL e.g., it is sorbed to mineral surfaces. Average organic loadings in the Amazon River (0.67 - 0.14 Mg C m{sup -2}), the river for which we have the largest dataset, are approximately twice that of sedimentary minerals from the Amazon Delta (-0.35 mg C m{sup -2}). Stable carbon isotope analysis indicate that approximately two-thirds of the total carbon on the deltaic particles is terrestrial. The combined surface-normalized, isotope-distinguished estimate is that >70% of the Amazon fluvial POM is not buried in the delta consistent with other independent evidence. Losses of terrestrial POM have also been quantified for the river/delta systems of Columbia in the USA, Fly in New Guinea. and Huange-He in China. If the losses of riverine POM observed in these river/delta systems are representative of rivers worldwide, then the surface-constrained analyses point toward a global loss of fluvial POM in delta regions of {approximately}0.1 x 10{sup 15} g C y{sup -1}. 28 refs., 2 figs., 1 tab.

  12. Preservation of organic matter in sediments promoted by iron.

    PubMed

    Lalonde, Karine; Mucci, Alfonso; Ouellet, Alexandre; Gélinas, Yves

    2012-03-07

    The biogeochemical cycles of iron and organic carbon are strongly interlinked. In oceanic waters, organic ligands have been shown to control the concentration of dissolved iron. In soils, solid iron phases shelter and preserve organic carbon, but the role of iron in the preservation of organic matter in sediments has not been clearly established. Here we use an iron reduction method previously applied to soils to determine the amount of organic carbon associated with reactive iron phases in sediments of various mineralogies collected from a wide range of depositional environments. Our findings suggest that 21.5 ± 8.6 per cent of the organic carbon in sediments is directly bound to reactive iron phases. We further estimate that a global mass of (19-45) × 10(15) grams of organic carbon is preserved in surface marine sediments as a result of its association with iron. We propose that these associations between organic carbon and iron, which are formed primarily through co-precipitation and/or direct chelation, promote the preservation of organic carbon in sediments. Because reactive iron phases are metastable over geological timescales, we suggest that they serve as an efficient 'rusty sink' for organic carbon, acting as a key factor in the long-term storage of organic carbon and thus contributing to the global cycles of carbon, oxygen and sulphur.

  13. Strong tidal currents and labile organic matter stimulate benthic decomposition and carbonate fluxes on the southern Great Barrier Reef shelf

    NASA Astrophysics Data System (ADS)

    Alongi, D. M.; Trott, L. A.; Møhl, M.

    2011-09-01

    The southern Great Barrier Reef (GBR) shelf is characterized by a sharp across-shelf gradient from terrigenous to marine-derived organic matter, and by the presence on the outer shelf of the Pompey Reef Complex (PRC). The PRC runs parallel to the shelf edge and consists of many narrow, turbid channels where strong tidal currents and eddies foster high suspended loads and phytoplankton production that sustain lush gardens of suspension-feeding, benthic communities. Rates and pathways of benthic carbon decomposition and carbonate kinetics in relation to these characteristics were measured across the shelf. Flux rates of DIC, O 2, Mn, and dissolved inorganic nutrients across the sediment-water interface were rapid, increasing from inshore and peaking at the channels within the PRC. Rates of DIC (mean: 39.5 mmol m -2 d -1; range: 14.5-103.2) and NH4+ production (mean=5.4 mmol m -2 d -1; range=1.6-23.7) from incubated sediments were rapid compared with other shelves. Sulfate reduction (mean:1.2 mmol S m -2 d -1; range: 0.1-6.1) and iron reduction (mean: 2.7 mmol Fe m -2 d -1; range: 0.6-4.6) were minor diagenetic pathways, measured only in inshore and mid-shelf deposits. Manganese reduction (mean: 12.5 mmol Mn m -2 d -1; range: 0.5-55.9) was the second most important pathway, as sites seaward of the inner shelf were dominated by aerobic respiration (63-99% of total C oxidation). There was no detectable production of either CH 4 or N 2O. Rates of O 2 consumption were rapid (mean: 44.6 mmol m -2 d -1; range: 10.2-121.9) with the percentage of O 2 involved in chemical oxidation declining from 90% to 92% inshore to <10% at the shelf edge. From inshore to the mid-shelf reefs, ≈20% of remineralized DIC was involved in carbonate dissolution whereas ≈10% was involved in authigenic mineral formation on the outer shelf and at the shelf edge. N 2 production was rapid and much greater than nitrogen fixation but neither showed across-shelf patterns. High tidal energy within the

  14. Organic matter determination for street dust in Delhi.

    PubMed

    Shandilya, Kaushik K; Khare, Mukesh; Gupta, A B

    2013-06-01

    The organic matter of street dust is considered as one of the causes for high human mortality rate. To understand the association, the street dust samples were collected from four different localities (industrial, residential, residential-commercial, and commercial) situated in the greater Delhi area of India. The loss-on-ignition method was used to determine the organic matter (OM) content in street dust. The OM content, potassium, calcium, sulfate, and nitrate concentrations of street dust in Delhi, India is measured to understand the spatial variation. Correlation analysis, analysis of variance, and factor analysis were performed to define the sources. The dust OM level ranges from 2.63 to 10.22 %. It is found through correlation and factor analysis that OM is primarily contributed from secondary aerosol and vehicular exhaust. The OM levels suggest that the use of a residential-commercial site for commercial purposes is polluting the street dust and creating the environmental and human health problems.

  15. Photochemical Degradation of Persistent Organic Pollutants: A Study of Ice Photochemistry Mediated by Dissolved Organic Matter

    NASA Astrophysics Data System (ADS)

    Bobby, R.; Pagano, L.; Grannas, A. M.

    2012-12-01

    It is well established that ice is a reactive medium in the environment and that active photochemistry occurs in frozen systems. Snow and ice contain a number of absorbing species including nitrate, peroxide and organic matter. Upon irradiation, they can generate a variety of reactive intermediates such as hydroxyl radical and singlet oxygen. It has been shown that dissolved organic matter is a ubiquitous component of snow and ice and plays an important role in overall light absorption properties of the sample. Additionally, the reactive intermediates produced can further react with contaminants present and alter their fate in the environment. Unfortunately, the role of dissolved organic matter in ice photochemistry has received little attention. Here we present results from laboratory-based studies aimed at elucidating the role of dissolved organic matter photochemistry on contaminant degradation in ice. Aqueous samples of our target pollutant, aldrin (20 μg/L), in liquid and frozen phases, were irradiated under Q-Panel 340 lamps to simulate the UV radiation profile of natural sunlight. Results indicated that frozen samples degraded more quickly than liquid samples and that the addition of dissolved organic matter increases the aldrin degradation rate significantly. Both terrestrial (Suwannee River, U.S.) and microbial sources (Pony Lake, Antarctica) of DOM were able to sensitize aldrin loss in ice. Scavengers of singlet oxygen, such as furfuryl alcohol and β-carotene, were also added to DOM solutions. Based on the type of organic matter present, the scavengers had different effects on the photochemical degradation of aldrin. Our results indicate that natural organic matter present in ice is an important component of ice photochemical processes.

  16. Organic matter and benthic metabolism in Lake Illawarra, Australia

    NASA Astrophysics Data System (ADS)

    Qu, Wenchuan; Morrison, R. J.; West, R. J.; Su, Chenwei

    2006-10-01

    Carbon and nitrogen contents (total organic carbon and total nitrogen), chlorophyll-a concentrations in surface sediments and benthic sediment-water fluxes of oxygen and carbon dioxide were investigated at five stations in Lake Illawarra (Australia) to compare the sources/quality of sedimentary organic matter and the characteristics of diagenesis and benthic biogeochemical processes for different primary producers (e.g., seagrass, microphytobenthos and macroalgae) and/or sediment types (sand or mud). The unvegetated sediments showed lower C/N ratios (with the lowest value occurring in the deep organic-rich muddy site) than the seagrass ( Ruppia or Zostera) beds, which may be due to the contribution of microalgae (mainly diatoms) to the sedimentary organic matter pool. This was also supported by the detection of microalgal pigments in the bare sediments. On an annual basis, seagrass beds exhibited the highest gross primary productivity (O 2 or TCO 2 fluxes), while the lowest rates occurred in the deep central basin of the Lake. Seasonally, there was a general trend of highest production in spring or summer, and lowest production in winter or autumn. Organic carbon oxidation scenarios, evaluated by either calcium carbonate dissolution or sulfate reduction models, indicated that both models can explain organic matter mineralization. Trophic status was evaluated using different indices including benthic trophic state index, net O 2 fluxes and P/ R ratios for Lake Illawarra, which led to similar trophic classifications in general, and also the same trends in spatial and seasonal variations. Overall, these data indicated that the Lake was heterotrophic on an annual basis, as the total community carbon respiration exceeded production, and this supported an earlier LOICZ mass balance/stoichiometric modelling conclusion.

  17. Production of Dissolved Organic Matter During Doliolid Feeding

    NASA Astrophysics Data System (ADS)

    Castellane, N. J.; Paffenhofer, G. A.; Stubbins, A.

    2016-02-01

    The biological carbon pump (BCP) draws carbon dioxide out of the atmosphere and buries it at the seafloor. The efficiency of the BCP is determined in part by the sinking rates of particulate organic carbon (POC) from ocean surface waters. Zooplankton can package POC into fecal pellets with higher sinking rates than their food source (e.g. phytoplankton), increasing the efficiency of the BCP. However, dissolved organic carbon (DOC) is also produced as zooplankton ingest and egest food, reducing the efficiency of BCP. The pelagic tunicate Dolioletta gegenbauri (doliolid) is a gelatinous zooplankton found at high concentrations in shelf waters, including our study site: the South Atlantic Bight. Doliolids are efficient grazers capable of stripping large quantities of phytoplankton from the water column. To determine the balance between pellet formation and DOC production during feeding, doliolids (6-7 mm gonozooids) were placed in natural seawater amended with a live phytoplankton food source and incubated on a plankton wheel. Dissolved organic matter (DOM) released directly to the water as well as the water soluble fraction of pellet organic matter were quantified and optically characterized. Colored dissolved organic matter (CDOM) absorbance and fluorescence spectra revealed that doliolid feeding produces DOM with optical properties that are commonly indicative of newly produced, highly biolabile DOM of microbial origin. Based upon these optical characteristics, doliolid-produced DOM is expected to be highly bio-labile in the environment and therefore rapidly degraded by surface ocean microbes shunting phytoplankton-derived organic carbon out of the BCP and back to dissolved inorganic carbon.

  18. Temperature sensitivity of organic-matter decay in tidal marshes

    USGS Publications Warehouse

    Kirwan, Matthew L.; Guntenspergen, Glenn R.; Langley, J.A.

    2014-01-01

    Approximately half of marine carbon sequestration takes place in coastal wetlands, including tidal marshes, where organic matter contributes to soil elevation and ecosystem persistence in the face of sea-level rise. The long-term viability of marshes and their carbon pools depends, in part, on how the balance between productivity and decay responds to climate change. Here, we report the sensitivity of labile soil organic-matter decay in tidal marshes to seasonal and latitudinal variations in temperature measured over a 3-year period. We find a moderate increase in decay rate at warmer temperatures (3-6% per °C, Q10 = 1.3-1.5). Despite the profound differences between microbial metabolism in wetlands and uplands, our results indicate a strong conservation of temperature sensitivity. Moreover, simple comparisons with organic-matter production suggest that elevated atmospheric CO2 and warmer temperatures will accelerate carbon accumulation in marsh soils, and potentially enhance their ability to survive sea-level rise.

  19. Temperature sensitivity of organic-matter decay in tidal marshes

    NASA Astrophysics Data System (ADS)

    Kirwan, M. L.; Guntenspergen, G. R.; Langley, J. A.

    2014-09-01

    Approximately half of marine carbon sequestration takes place in coastal wetlands, including tidal marshes, where organic matter contributes to soil elevation and ecosystem persistence in the face of sea-level rise. The long-term viability of marshes and their carbon pools depends, in part, on how the balance between productivity and decay responds to climate change. Here, we report the sensitivity of labile soil organic-matter decay in tidal marshes to seasonal and latitudinal variations in temperature measured over a 3-year period. We find a moderate increase in decay rate at warmer temperatures (3-6% per °C, Q10 = 1.3-1.5). Despite the profound differences between microbial metabolism in wetlands and uplands, our results indicate a strong conservation of temperature sensitivity. Moreover, simple comparisons with organic-matter production suggest that elevated atmospheric CO2 and warmer temperatures will accelerate carbon accumulation in marsh soils, and potentially enhance their ability to survive sea-level rise.

  20. Methylmercury production in estuarine sediments: role of organic matter

    PubMed Central

    Schartup, Amina T.; Mason, Robert P.; Balcom, Prentiss H.; Hollweg, Terill A.; Chen, Celia Y.

    2013-01-01

    Methylmercury (MeHg) affects wildlife and human health mainly through marine fish consumption. In marine systems, MeHg is formed from inorganic mercury (HgII) species primarily in sediments then accumulates and biomagnifies in the food web. Most of the fish consumed in the US are from estuarine and marine systems highlighting the importance of understanding MeHg formation in these productive regions. Sediment organic matter has been shown to limit mercury methylation in estuarine ecosystems, as a result it is often described as the primary control over MeHg production. In this paper, we explore the role of organic matter by looking at the effects of its changing sediment concentrations on the methylation rates across multiple estuaries. We measured sedimentary MeHg production at eleven estuarine sites that were selected for their contrasting biogeochemical characteristics, mercury (Hg) content, and location in the Northeastern US (ME, NH, CT, NY, and NJ). Sedimentary total Hg concentrations ranged across five orders of magnitude, increasing in concentration from the pristine, sandy sediments of Wells (ME), to industrially contaminated areas like Portsmouth (NH) and Hackensack (NJ). We find that methylation rates are the highest at locations with high Hg content (relative to carbon), and that organic matter does not hinder mercury methylation in estuaries. PMID:23194318

  1. Terrestrial dominance of organic matter in north temperate lakes

    NASA Astrophysics Data System (ADS)

    Wilkinson, G.; Pace, M. L.; Cole, J. J.

    2012-12-01

    Aquatic ecosystems are hotspots of decomposition and a source of carbon dioxide to the atmosphere that is globally significant. Carbon exported from land (allochthonous) also supplements the carbon fixed by photosynthesis in aquatic ecosystems (autochthonous), contributing to the organic matter (OM) that supports aquatic consumers. Although the presence of terrestrial compounds in aquatic OM is well known, the contribution of terrestrial versus aquatic sources to the composition of OM has been quantified for only a handful of systems. Here we use stable isotopes of hydrogen and carbon to demonstrate that the terrestrial contribution to particulate organic matter (POM) is as large or larger (mean=54.6% terrestrial) than the algal contribution in 39 lakes of the northern highlands region of Wisconsin and Michigan. Further, the largest carbon pool, dissolved organic matter (DOM), is strongly dominated by allochthonous material (mean for the same set of lakes approximately 100% terrestrial). Among lakes, increases in terrestrial contribution to POM are significantly correlated with more acidic pH. Extrapolating this relationship using a survey of pH in 1692 lakes in the region reveals that, with the exception of eutrophic lakes, most of the OM in lakes is of terrestrial origin. These results are consistent with the growing evidence that terrestrial OM may support many lake food webs, and that lakes are significant conduits for returning degraded terrestrial carbon to the atmosphere.

  2. Terrestrial dominance of organic matter in north temperate lakes

    NASA Astrophysics Data System (ADS)

    Wilkinson, Grace M.; Pace, Michael L.; Cole, Jonathan J.

    2013-01-01

    Aquatic ecosystems are hotspots of decomposition and sources of carbon dioxide to the atmosphere that are globally significant. Carbon exported from land (allochthonous) also supplements the carbon fixed by photosynthesis in aquatic ecosystems (autochthonous), contributing to the organic matter (OM) that supports aquatic consumers. Although the presence of terrestrial compounds in aquatic OM is well known, the contribution of terrestrial versus aquatic sources to the composition of OM has been quantified for only a handful of systems. Here we use stable isotopes of hydrogen and carbon to demonstrate that the terrestrial contribution (ΦTerr) to particulate organic matter (POM) is as large or larger (mean = 54.6% terrestrial) than the algal contribution in 39 lakes of the northern highlands region of Wisconsin and Michigan. Further, the largest carbon pool, dissolved organic matter (DOM), is strongly dominated by allochthonous material (mean for the same set of lakes approximately 100% terrestrial). Among lakes, increases in terrestrial contribution to POM are significantly correlated with more acidic pH. Extrapolating this relationship using a survey of pH in 1692 lakes in the region reveals that, with the exception of eutrophic lakes, most of the OM in lakes is of terrestrial origin. These results are consistent with the growing evidence that lakes are significant conduits for returning degraded terrestrial carbon to the atmosphere.

  3. Matrix protected organic matter in a river dominated margin: A possible mechanism to sequester terrestrial organic matter?

    NASA Astrophysics Data System (ADS)

    Mead, Ralph N.; Goñi, Miguel A.

    2008-06-01

    The provenance of organic matter in surface sediments from the northern Gulf of Mexico was investigated by analyzing the compositions of lipid biomarkers ( n-alkanes, fatty acids, sterols) liberated after a series of chemical treatments designed to remove different organo-mineral matrix associations (i.e. freely extractable, base-hydrolyzable, unhydrolyzable). Bulk analyses of the organic matter (carbon content, carbon:nitrogen ratios, stable and radiocarbon isotopic analyses) were also performed on the intact sediments and their non-hydrolyzable, demineralized residue. We found recognizable lipids from distinct sources, including terrestrial vascular plants, bacteria and marine algae and zooplankton, within each of the isolated fractions. Based on the lipid signatures and bulk compositions, the organic matter within the unhydrolyzable fractions appeared to be the most diagenetically altered, was the oldest in age, and had the highest abundance of terrigenous lipids. In contrast, the base-hydrolyzable fraction was the most diagentically unaltered, had the youngest ages and was most enriched in N and marine lipids. Our results indicate that fresh, autochthonous organic matter is the most important contributor to base-hydrolyzable lipids, whereas highly altered allochthonous sources appear to be predominant source of unhydrolyzable lipids in the surface sediments from the Atchafalaya River shelf. Overall, the lipid biomarker signatures of intact sediments were biased towards the autochthonous source because many of the organic compounds indicative of degraded, terrigenous sources were protected from extraction and saponification by organo-mineral matrices. It is only after these protective matrices were removed by treatment with HCl and HF that these compounds became evident.

  4. The Impact of Microbial Metabolism on Marine Dissolved Organic Matter

    NASA Astrophysics Data System (ADS)

    Kujawinski, Elizabeth B.

    2011-01-01

    Microbes mediate global biogeochemical cycles through their metabolism, and all metabolic processes begin with the interaction between the microbial cell wall or membrane and the external environment. For all heterotrophs and many autotrophs, critical growth substrates and factors are present within the dilute and heterogeneous mixture of compounds that constitutes dissolved organic matter (DOM). In short, the microbe-molecule interaction is one of the fundamental reactions within the global carbon cycle. Here, I summarize recent findings from studies that examine DOM-microbe interactions from either the DOM perspective (organic geochemistry) or the microbe perspective (microbial ecology). Gaps in our knowledge are highlighted and future integrative research directions are proposed.

  5. Comments on D/H ratios in chondritic organic matter

    NASA Astrophysics Data System (ADS)

    Smith, J. W.; Rigby, D.

    1981-06-01

    D/H ratios in chondritic organic matter are investigated. Demineralized organic residues obtained from previous experiments were dried in a quartz reaction vessel under vacuum for 60 minutes at 250-300 C and then combusted in oxygen for 20 minutes at 850 C. The apparatus is described and the results of the experiments such as D/H ratios in water and measurements on total carbon dioxide are given. Atomic H/C ratios calculated directly from the quantities of carbon dioxide and water recovered, are reported according to Standard Mean Ocean Water and Pee Dee Belemnite, using the customary notation.

  6. Microorganisms and typical organic matter responsible for lacustrine "black bloom".

    PubMed

    Feng, Ziyan; Fan, Chengxin; Huang, Weiyi; Ding, Shiming

    2014-02-01

    Identifying the causation of the black substance in lacustrine "black bloom" is of great significance for forecasting and preventing black bloom in many waters of the world. In this research, an array of black bloom was simulated in a laboratory to investigate how microorganisms and organic matter affect black bloom. Sulphate-reducing bacteria (SRB) are the main biological factor, and protein is the key organic factor contributing to lacustrine black bloom. The black colour of black bloom is strongly associated with a relatively high SRB population density. Hydrogen sulphide concentration can serve as a predictor of black bloom. © 2013.

  7. Carbon isotopic studies of organic matter in Precambrian rocks.

    NASA Technical Reports Server (NTRS)

    Oehler, D. Z.; Schopf, J. W.; Kvenvolden, K. A.

    1972-01-01

    A survey has been undertaken of the carbon composition of the total organic fraction of a suite of Precambrian sediments to detect isotopic trends possibly correlative with early evolutionary events. Early Precambrian cherts of the Fig Tree and upper and middle Onverwacht groups of South Africa were examined for this purpose. Reduced carbon in these cherts was found to be isotopically similar to photosynthetically produced organic matter of younger geological age. Reduced carbon in lower Onverwacht cherts was found to be anomalously heavy; it is suggested that this discontinuity may reflect a major event in biological evolution.

  8. Organic matter in meteorites and comets - Possible origins

    NASA Astrophysics Data System (ADS)

    Anders, E.

    1991-04-01

    At least six extraterrestrial environments may have contributed organic compounds to meteorites and comets: solar nebula, giant-planet subnebulae, asteroid interiors containing liquid water, carbon star atmospheres, and diffuse or dark interstellar clouds. The record in meteorites is partly obscured by pervasive reheating that transformed much of the organic matter to kerogen; nonetheless, it seems that all six formation sites contributed. For comets, the large abundance of HCHO, HCN, and unsaturated hydrocarbons suggests an interstellar component of 50 percent or more, but the contributions of various interstellar processes, and of a solar-nebula component, are hard to quantify. A research program is outlined that may help reduce these uncertainties.

  9. Plutonium Immobilization and Mobilization by Soil Organic Matter

    SciTech Connect

    Santschi, Peter H.; Schwehr, Kathleen A.; Xu, Chen; Athon, Matthew; Ho, Yi-Fang; Hatcher, Patrick G.; Didonato, Nicole; Kaplan, Daniel I.

    2016-03-08

    The human and environmental risks associated with Pu disposal, remediation, and nuclear accidents scenarios stems mainly from the very long half-lives of several of its isotopes. The SRS, holding one-third of the nation’s Pu inventory, has a long-term stewardship commitment to investigation of Pu behavior in the groundwater and downgradient vast wetlands. Pu is believed to be essentially immobile due to its low solubility and high particle reactivity to mineral phase or natural organic matter (NOM). For example, in sediments collected from a region of SRS, close to a wetland and a groundwater plume, 239,240Pu concentrations suggest immobilization by NOM compounds, as Pu correlate with NOM contents. Micro-SXRF data indicate, however, that Pu does not correlate with Fe. However, previous studies reported Pu can be transported several kilometers in surface water systems, in the form of a colloidal organic matter carrier, through wind/water interactions. The role of NOM in both immobilizing or re-mobilizing Pu thus has been demonstrated. Our results indicate that more Pu (IV) than (V) was bound to soil colloidal organic matter (COM), amended at far-field concentrations. Contrary to expectations, the presence of NOM in the F-Area soil did not enhance Pu fixation to the organic-rich soil, when compared to the organic-poor soil or the mineral phase from the same soil source, due to the formation of COM-bound Pu. Most importantly, Pu uptake by organic-rich soil decreased with increasing pH because more NOM in the colloidal size desorbed from the particulate fraction at elevated pH, resulting in greater amounts of Pu associated with the COM fraction. This is in contrast to previous observations with low-NOM sediments or minerals, which showed increased Pu uptake with increasing pH levels. This demonstrates that despite Pu immobilization by NOM, COM can convert Pu into a more mobile form. Sediment Pu concentrations in the SRS F-Area wetland were correlated to total organic

  10. Organic matter in meteorites and comets - Possible origins

    NASA Technical Reports Server (NTRS)

    Anders, Edward

    1991-01-01

    At least six extraterrestrial environments may have contributed organic compounds to meteorites and comets: solar nebula, giant-planet subnebulae, asteroid interiors containing liquid water, carbon star atmospheres, and diffuse or dark interstellar clouds. The record in meteorites is partly obscured by pervasive reheating that transformed much of the organic matter to kerogen; nonetheless, it seems that all six formation sites contributed. For comets, the large abundance of HCHO, HCN, and unsaturated hydrocarbons suggests an interstellar component of 50 percent or more, but the contributions of various interstellar processes, and of a solar-nebula component, are hard to quantify. A research program is outlined that may help reduce these uncertainties.

  11. SOIL NITROGEN TRANSFORMATIONS AND ROLE OF LIGHT FRACTION ORGANIC MATTER IN FOREST SOILS

    EPA Science Inventory

    Depletion of soil organic matter through cultivation may alter substrate availability for microbes, altering the dynamic balance between nitrogen (N) immobilization and mineralization. Soil light fraction (LF) organic matter is an active pool that decreases upon cultivation, and...

  12. SOIL NITROGEN TRANSFORMATIONS AND ROLE OF LIGHT FRACTION ORGANIC MATTER IN FOREST SOILS

    EPA Science Inventory

    Depletion of soil organic matter through cultivation may alter substrate availability for microbes, altering the dynamic balance between nitrogen (N) immobilization and mineralization. Soil light fraction (LF) organic matter is an active pool that decreases upon cultivation, and...

  13. Iron traps terrestrially derived dissolved organic matter at redox interfaces.

    PubMed

    Riedel, Thomas; Zak, Dominik; Biester, Harald; Dittmar, Thorsten

    2013-06-18

    Reactive iron and organic carbon are intimately associated in soils and sediments. However, to date, the organic compounds involved are uncharacterized on the molecular level. At redox interfaces in peatlands, where the biogeochemical cycles of iron and dissolved organic matter (DOM) are coupled, this issue can readily be studied. We found that precipitation of iron hydroxides at the oxic surface layer of two rewetted fens removed a large fraction of DOM via coagulation. On aeration of anoxic fen pore waters, >90% of dissolved iron and 27 ± 7% (mean ± SD) of dissolved organic carbon were rapidly (within 24 h) removed. Using ultra-high-resolution MS, we show that vascular plant-derived aromatic and pyrogenic compounds were preferentially retained, whereas the majority of carboxyl-rich aliphatic acids remained in solution. We propose that redox interfaces, which are ubiquitous in marine and terrestrial settings, are selective yet intermediate barriers that limit the flux of land-derived DOM to oceanic waters.

  14. Soil Quality of Restinga Forest: Organic Matter and Aluminum Saturation

    NASA Astrophysics Data System (ADS)

    Rodrigues Almeida Filho, Jasse; Casagrande, José Carlos; Martins Bonilha, Rodolfo; Soares, Marcio Roberto; Silva, Luiz Gabriel; Colato, Alexandre

    2013-04-01

    The restinga vegetation (sand coastal plain vegetation) consists of a mosaic of plant communities, which are defined by the characteristics of the substrates, resulting from the type and age of the depositional processes. This mosaic complex of vegetation types comprises restinga forest in advanced (high restinga) and medium regeneration stages (low restinga), each with particular differentiating vegetation characteristics. Of all ecosystems of the Atlantic Forest, restinga is the most fragile and susceptible to anthropic disturbances. The purpose of this study was evaluating the organic matter and aluminum saturation effects on soil quality index (SQI). Two locations were studied: State Park of the Serra do Mar, Picinguaba, in the city of Ubatuba (23°20' e 23°22' S / 44°48' e 44°52' W), and State Park of Cardoso Island in the city of Cananéia (25°03'05" e 25°18'18" S / 47°53'48" e 48° 05'42" W). The soil samples were collect at a depth of 0-10 cm, where concentrate 70% of vegetation root system. Was studied an additive model to evaluate soil quality index. The shallow root system development occurs due to low calcium levels, whose disability limits their development, but also can reflect on delay, restriction or even in the failure of the development vegetation. The organic matter is kept in the soil restinga ecosystem by high acidity, which reduces the decomposition of soil organic matter, which is very poor in nutrients. The base saturation, less than 10, was low due to low amounts of Na, K, Ca and Mg, indicating low nutritional reserve into the soil, due to very high rainfall and sandy texture, resulting in high saturation values for aluminum. Considering the critical threshold to 3% organic matter and for aluminum saturation to 40%, the IQS ranged from 0.95 to 0.1 as increased aluminum saturation and decreased the soil organic matter, indicating the main limitation to the growth of plants in this type of soil, when deforested.

  15. Using Riverine Natural Organic Matter to Test the Hypothesis that Soil Organic Matter is Modified by Contact with Sodium Hydroxide

    NASA Astrophysics Data System (ADS)

    Perdue, E. Michael; Driver, Shamus; Hertkorn, Norbert; Harir, Mourad; Schmitt-Kopplin, Philippe

    2016-04-01

    It has been postulated by some scientists that soil humic acids and fulvic acids are an artifact of alkaline extractions of soil. Riverine natural organic matter (NOM) is obtained in part by dissolution and transport of organic matter from soils by meteoric waters at acidic to circumneutral pH. The NOM may be fractionated into humic acid (HA), fulvic acid (FA), and hydrophilic NOM by adsorption of HA and FA onto XAD-8 resin at pH < 2, followed by their desorption with NaOH at pH 13. Alternatively, riverine NOM may be concentrated using reverse osmosis (RO) and desalted by cation exchange. Several properties of Suwannee River NOM prior to its isolation, after concentration by RO, and after the XAD-8 process are compared to detect modifications that might have resulted from exposure of the sample to low and high pH.

  16. Soil organic matter regulates molybdenum storage and mobility in forests

    USGS Publications Warehouse

    Marks, Jade A; Perakis, Steven; King, Elizabeth K; Pett-Ridge, Julie

    2015-01-01

    The trace element molybdenum (Mo) is essential to a suite of nitrogen (N) cycling processes in ecosystems, but there is limited information on its distribution within soils and relationship to plant and bedrock pools. We examined soil, bedrock, and plant Mo variation across 24 forests spanning wide soil pH gradients on both basaltic and sedimentary lithologies in the Oregon Coast Range. We found that the oxidizable organic fraction of surface mineral soil accounted for an average of 33 %of bulk soil Mo across all sites, followed by 1.4 % associated with reducible Fe, Al, and Mn-oxides, and 1.4 % in exchangeable ion form. Exchangeable Mo was greatest at low pH, and its positive correlation with soil carbon (C) suggests organic matter as the source of readily exchangeable Mo. Molybdenum accumulation integrated over soil profiles to 1 m depth (τMoNb) increased with soil C, indicating that soil organic matter regulates long-term Mo retention and loss from soil. Foliar Mo concentrations displayed no relationship with bulk soil Mo, and were not correlated with organic horizon Mo or soil extractable Mo, suggesting active plant regulation of Mo uptake and/or poor fidelity of extractable pools to bioavailability. We estimate from precipitation sampling that atmospheric deposition supplies, on average, over 10 times more Mo annually than does litterfall to soil. In contrast, bedrock lithology had negligible effects on foliar and soil Mo concentrations and on Mo distribution among soil fractions. We conclude that atmospheric inputs may be a significant source of Mo to forest ecosystems, and that strong Mo retention by soil organic matter limits ecosystem Mo loss via dissolution and leaching pathways.

  17. The composition and degradability of upland dissolved organic matter

    NASA Astrophysics Data System (ADS)

    Moody, Catherine; Worrall, Fred; Clay, Gareth

    2016-04-01

    In order to assess controls on the degradability of DOM in stream water, samples of dissolved organic matter (DOM) and particulate organic matter (POM) were collected every month for a period of 24 months from an upland, peat-covered catchment in northern England. Each month the degradability of the DOM was assessed by exposing river water to light for up to 24 hours, and the change in the dissolved organic carbon (DOC) concentration in the water was measured. To provide context for the analysis of DOM and its degradability, samples of peat, vegetation, and litter were also taken from the same catchment and analysed. The organic matter samples were analysed by several methods including: elemental analysis (CHN and O), bomb calorimetry, thermogravimetric analysis, pyrolysis GC/MS, ICP-OES, stable isotope analysis (13C and 15N) and 13C solid state nuclear magnetic resonance (NMR). The water samples were analysed for pH, conductivity, absorbance at 400nm, anions, cations, particulate organic carbon (POC) and DOC concentrations. River flow conditions and meteorology were also recorded at the site and included in the analysis of the composition and degradability of DOM. The results of multiple regression models showed that the rates of DOC degradation were affected by the N-alkyl, O-alkyl, aldehyde and aromatic relative intensities, gross heat, OR and C:N. Of these, the N-alkyl relative intensity had the greatest influence, and this in turn was found to be dependent on the rainfall and soil temperature in the week before sampling.

  18. Isotopic constraints on the origin of meteoritic organic matter

    NASA Technical Reports Server (NTRS)

    Kerridge, J. F.

    1991-01-01

    Salient features of the isotopic distribution of H, C and N in the organic material found in carbonaceous meteorites are noted. Most organic fractions are strongly enriched in D with respect to the D/H ratio characteristic of H2 in the protosolar system; substantial variations in C-13/C-12 ratio are found among different molecular species, with oxidised species tending to be C-13 enriched relative to reduced species; some homologous series reveal systematic decrease in C-13/C-12 with increasing C number; considerable variation in N-15/N-14 ratio is observed within organic matter, though no systematic pattern to its distribution has yet emerged; no interelement correlations have been observed between isotope enrichments for the different biogenic elements. The isotopic complexity echoes the molecular diversity observed in meteoritic organic matter and suggests that the organic matter was formed by multiple processes and/or from multiple sources. However, existence of a few systematic patterns points towards survival of isotopic signatures characteristic of one or more specific processes. The widespread D enrichment implies either survival of many species of interstellar molecule or synthesis from a reservoir containing a significant interstellar component. Several of the questions raised above can be addressed by more detailed determination of the distribution of the H, C and N isotopes among different well-characterized molecular fractions. Thus, the present study is aimed at discovering whether the different amino acids have comparable D enrichments, which would imply local synthesis from a D-enriched reservoir, or very viable D enrichments, which would imply survival of some interstellar amino acids. The same approach is also being applied to polycyclic aromatic hydrocarbons. Because the analytical technique employed (secondary ion mass spectrometry) can acquire data for all three isotopic systems from each molecular fraction, any presently obscured interelement

  19. Organic matter and soil structure in the Everglades Agricultural Area

    SciTech Connect

    Wright, Alan L.; Hanlon, Edward A.

    2013-01-01

    This publication pertains to management of organic soils (Histosols) in the Everglades Agricultural Area (EAA). These former wetland soils are a major resource for efficient agricultural production and are important globally for their high organic matter content. Recognition of global warming has led to considerable interest in soils as a repository for carbon. Soils rich in organic matter essentially sequester or retain carbon in the profile and can contribute directly to keeping that sequestered carbon from entering the atmosphere. Identification and utilization of management practices that minimize the loss of carbon from organic soils to the atmosphere can minimize effects on global warming and increase the longevity of subsiding Histosols for agricultural use. Understanding and predicting how these muck soils will respond to current and changing land uses will help to manage soil carbon. The objectives of this document are to: a. Discuss organic soil oxidation relative to storing or releasing carbon and nitrogen b. Evaluate effects of cultivation (compare structure for sugarcane vs. uncultivated soil) Based upon the findings from the land-use comparison (sugarcane or uncultivated), organic carbon was higher with cultivation in the lower depths. There is considerable potential for minimum tillage and residue management to further enhance carbon sequestration in the sugarcane system. Carbon sequestration is improved and soil subsidence is slowed with sugarcane production, and both of these are positive outcomes. Taking action to increase or maintain carbon sequestration appears to be appropriate but may introduce some risk to farming operations. Additional management methods are needed to reduce this risk. For both the longevity of these organic soils and from a global perspective, slowing subsidence through BMP implementation makes sense. Since these BMPs also have considerable societal benefit, it remains to be seen if society will help to offset a part or all

  20. Formation of soil organic matter via biochemical and physical pathways of litter mass loss

    NASA Astrophysics Data System (ADS)

    Cotrufo, M. Francesca; Soong, Jennifer L.; Horton, Andrew J.; Campbell, Eleanor E.; Haddix, Michelle L.; Wall, Diana H.; Parton, William J.

    2015-10-01

    Soil organic matter is the largest terrestrial carbon pool. The pool size depends on the balance between formation of soil organic matter from decomposition of plant litter and its mineralization to inorganic carbon. Knowledge of soil organic matter formation remains limited and current C numerical models assume that stable soil organic matter is formed primarily from recalcitrant plant litter. However, labile components of plant litter could also form mineral-stabilized soil organic matter. Here we followed the decomposition of isotopically labelled above-ground litter and its incorporation into soil organic matter over three years in a grassland in Kansas, USA, and used laboratory incubations to determine the decay rates and pool structure of litter-derived organic matter. Early in decomposition, soil organic matter formed when non-structural compounds were lost from litter. Soil organic matter also formed at the end of decomposition, when both non-structural and structural compounds were lost at similar rates. We conclude that two pathways yield soil organic matter efficiently. A dissolved organic matter-microbial path occurs early in decomposition when litter loses mostly non-structural compounds, which are incorporated into microbial biomass at high rates, resulting in efficient soil organic matter formation. An equally efficient physical-transfer path occurs when litter fragments move into soil.

  1. Organic matter content of soil after logging of fir and redwood forests

    Treesearch

    Philip B. Durgin

    1980-01-01

    Organic matter in soil controls a variety of soil properties. A study in Humboldt County, California, evaluated changes in percentages of organic matter in soil as a function of time after timber harvest and soil depth in fir and redwood forests. To assess organic matter content, samples were taken from cutblocks of various ages in soil to depths of 1.33 m. Results...

  2. Research Highlight: Water-extractable organic matter from sandy loam soils

    USDA-ARS?s Scientific Manuscript database

    Labile organic matter plays important roles in soil health and nutrient cycling because of its dynamic nature. Water-extractable organic matter is part of the soil labile organic matter. In an article recently published in Agricultural & Environmental Letters, researchers report on the level and na...

  3. Organic matter oxidation and aragonite diagenesis in a coral reef

    SciTech Connect

    Tribble, G.W. Univ. of Hawaii, Honolulu )

    1993-05-01

    A combination of field and theoretical work is used to study controls on the saturation state of aragonite inside a coral-reef framework. A closed-system ion-speciation model is used to evaluate the effect of organic-matter oxidation on the saturation state of aragonite. The aragonite saturation state initially drops below 1 but becomes oversaturated during sulfate reduction. The C:N ratio of the organic matter affects the degree of oversaturation with N-poor organic material resulting in a system more corrosive to aragonite. Precipitation of sulfide as FeS strongly affects the aragonite saturation state, and systems with much FeS formation will have a stronger tendency to become oversaturated with respect to aragonite. Both precipitation and dissolution of aragonite are predicted at different stages of the organic reaction pathway if the model system is maintained at aragonite saturation. Field data from a coral-reef framework indicate that the system maintains itself at aragonite saturation, and model-predicted changes in dissolved calcium follow those observed in the interstitial waters of the reef. Aragonite probably acts as a solid-phase buffer in regulating the pH of interstitial waters. Because interstitial water in the reef has a short residence time, the observed equilibration suggests rapid kinetics.

  4. Organic matter and nutrient inputs to the Humber Estuary, England.

    PubMed

    Boyes, Suzanne; Elliott, Michael

    2006-01-01

    Estuaries are sinks for organic matter and nutrients entering both from their catchments and also from the adjacent lands and urban areas and in turn they are sources of such materials to the adjacent coast. The present paper quantifies the relative amounts of natural and anthropogenic organic matter and nutrients entering the Humber Estuary, Eastern England, including the allochthonous and autochthonous materials, those from urban and industrial sewage and from the catchment drainage of arable land. These data thus give a budget for the estuary which in turn answers questions fundamental to the management of the estuary. The estimations within the study have been carried out against a background of designating estuaries under the European Union Urban Waste-water Treatment Directive and the EU Nitrates Directive. The assessment has particularly addressed the question, related to the former Directive, of whether the Humber Estuary is eutrophic or likely to become eutrophic unless management measures are taken. Thus the paper indicates the nature and value of control measures such as treatment plant upgrading and the designation of Nitrate Vulnerable Zones. The paper includes the recent national and European discussions on the designation of areas under these Directives. Finally, the study has allowed a quantification of the present organic inputs to the estuary in comparison to those entering prior to large scale land-claim which had removed natural organic-producing wetlands.

  5. Organic speciation of size-segregated atmospheric particulate matter

    NASA Astrophysics Data System (ADS)

    Tremblay, Raphael

    Particle size and composition are key factors controlling the impacts of particulate matter (PM) on human health and the environment. A comprehensive method to characterize size-segregated PM organic content was developed, and evaluated during two field campaigns. Size-segregated particles were collected using a cascade impactor (Micro-Orifice Uniform Deposit Impactor) and a PM2.5 large volume sampler. A series of alkanes and polycyclic aromatic hydrocarbons (PAHs) were solvent extracted and quantified using a gas chromatograph coupled with a mass spectrometer (GC/MS). Large volume injections were performed using a programmable temperature vaporization (PTV) inlet to lower detection limits. The developed analysis method was evaluated during the 2001 and 2002 Intercomparison Exercise Program on Organic Contaminants in PM2.5 Air Particulate Matter led by the US National Institute of Standards and Technology (NIST). Ambient samples were collected in May 2002 as part of the Tampa Bay Regional Atmospheric Chemistry Experiment (BRACE) in Florida, USA and in July and August 2004 as part of the New England Air Quality Study - Intercontinental Transport and Chemical Transformation (NEAQS - ITCT) in New Hampshire, USA. Morphology of the collected particles was studied using scanning electron microscopy (SEM). Smaller particles (one micrometer or less) appeared to consist of solid cores surrounded by a liquid layer which is consistent with combustion particles and also possibly with particles formed and/or coated by secondary material like sulfate, nitrate and secondary organic aerosols. Source apportionment studies demonstrated the importance of stationary sources on the organic particulate matter observed at these two rural sites. Coal burning and biomass burning were found to be responsible for a large part of the observed PAHs during the field campaigns. Most of the measured PAHs were concentrated in particles smaller than one micrometer and linked to combustion sources

  6. Biotoxicity of nanoparticles: effect of natural organic matter

    NASA Astrophysics Data System (ADS)

    Lee, Sungyun; Kim, Kitae; Shon, H. K.; Kim, Sang Don; Cho, Jaeweon

    2011-07-01

    Various natural organic matters (NOM) with different characteristics in aquatic environment may affect toxicity of leased nanoparticles, owing to interactions between NOM and nanoparticles. This study investigated the effect of NOM and physical characteristics of the effluent organic matter (EfOM) on the ecotoxicity of quantum dots (QD) using Daphnia magna. Organic matter samples were obtained from: Yeongsan River (YR-NOM), Dongbuk Lake (DL-NOM), Damyang wastewater treatment plant (EfOM), and Suwannee River NOM (SR-NOM). The QD was composed of a CdSe core, ZnS shell, and polyethylene glycol coating. The average size of the investigated QD was 4.8, 56.5, and 25.0 nm determined by transmission electron microscopy, dynamic light scattering, and asymmetric flow field-flow fractionation, respectively. The relative hydrophobicity of NOM was investigated using both specific UV absorbance at 254 nm and XAD-8/4 resins. The sorption of NOM on the QD was measured using a fluorescence quenching method. The highest hydrophobicity was exhibited by the SR-NOM, while the lowest was recorded for the DL-NOM. All tested NOMs significantly reduced the acute toxicity of D. magna when adsorbed to QD, and the order of effectiveness for each NOM was as follows: SR-NOM > EfOM > YS-NOM > DL-NOM. The sorption of NOM on the QD surface caused a decrease in the fluorescence intensity of QD at increasing NOM concentration. This suggests that the NOM coating influenced the physicochemical characteristics of QD in the internal organs of D. magna by inducing a reduced bioavailability . Results from this study revealed that NOM with relatively high hydrophobicity had a greater capability of inducing toxicity mitigation.

  7. Competitive Sorption and Desorption of Chlorinated Organic Solvents (DNAPLs) in Engineered Natural Organic Matter

    SciTech Connect

    Tang, Jixin; Weber, Walter J., Jr.

    2004-03-31

    The effects of artificially accelerated geochemical condensation and maturation of natural organic matter on the sorption and desorption of trichloroethylene (TCE) and tetrachloroethylene (PCE) were studied. The sorption and desorption of TCE in the presence and absence of the competing PCE and 1,2-dichlorobenzene (DCB) were also examined. A sphagnum peat comprising geologically young organic matter was artificially ''aged'' using superheated water, thus increasing the aromaticity and the degree of condensation of its associated organic matter. The sorption of all solutes tested were increased remarkably and their respective desorptions reduced, by the aged peat. The sorption capacities and isotherm nonlinearities of the peat for both TCE and PCE were found to increase as treatment temperature increased. In the competitive sorption studies, both PCE and DCB were found to depress TCE sorption, with PCE having greater effects than DCB, presumably because the molecular structure o f the former is more similar to that of TCE.

  8. Effluent organic matter (EfOM) characterization by simultaneous measurement of proteins and humic matter.

    PubMed

    Vakondios, Nikos; Koukouraki, Elisavet E; Diamadopoulos, Evan

    2014-10-15

    This work developed a method, based on the Lowry method and Frølund modification, for the simultaneous determination of proteins and humic matter in wastewater effluent samples at low concentrations. The method was based on simultaneous spectrophotometric measurements of proteins and humic matter at 750 nm in the absence and presence of CuSO4, which is responsible for increasing the absorbance only in the presence of to proteins. Statistical analysis through ANOVA showed that the response surface of the method fit the experimental measurements at significance level lower than 0.05, indicating satisfactory fit. The quantification limits of the proposed method were 0.5-30 mg/l for proteins and 2-30 mg/l for humic matter. The presence of carbohydrates did not interfere with the analysis of proteins and humic matter at carbohydrate concentrations below 35-40 mg/l. The Lowry method overestimated the concentration of the proteins because of the presence of humic substances. A carbon balance indicated that the analytical method developed could provide a satisfactory distribution of the main organic constituents in wastewater and effluents.

  9. Dissolved organic matter in the ocean: recalcitrant or simply too diverse for bio-degradation?

    NASA Astrophysics Data System (ADS)

    Kattner, Gerhard; Koch, Boris P.

    2010-05-01

    The amount of carbon in the dissolved organic matter (DOM) pool in the ocean is estimated to be 700 Pg C, whereas the particulate marine organic carbon accounts only for about 30 Pg C. Dissolved organic carbon (DOC) is almost as much as the amount of carbon in atmospheric CO2 (~800 Pg) or terrestrial biomass (~610 Pg). The majority of DOC in the ocean has an average age of 4000 to 6000 years. Thus, DOM must be extremely resistant against biotic and abiotic degradation and remineralization and/or unusable for microorganisms. However, the mechanisms of generation of recalcitrant DOM are still unclear. DOM is produced by primary producers, is actively released or originates from a huge variety of biological and chemical processes. This originally labile DOM is transformed to semi-labile and finally to recalcitrant DOM. These transformations proceed on time scales of days to month and probably over very long periods of time. Without knowledge on molecular structures it is impossible to discern why DOM is so resistant against biotic and abiotic decomposition. Tools for the chemical characterization of DOM in the ocean are limited, and thus, the molecular structure of marine DOM remains largely unknown. The present molecular level determination of DOM in seawater is essentially restricted to carbohydrates, amino acids, lipids and aminosugars. These compounds represent less than 10% of the open ocean DOC, and because they are usually determined after considerable chemical treatment the chemical structure they are embedded is also unknown. Other data on molecular level characterization are obtained by the combination of analytical techniques with various methods of isolation and fractionation of DOM such as solid phase extraction and ultrafiltration. However, it has to be considered that only a method-dependent fraction can be isolated from the total DOM. In the past few years, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR-MS) enabled to determine the

  10. Modelling of organic matter dynamics during the composting process.

    PubMed

    Zhang, Y; Lashermes, G; Houot, S; Doublet, J; Steyer, J P; Zhu, Y G; Barriuso, E; Garnier, P

    2012-01-01

    Composting urban organic wastes enables the recycling of their organic fraction in agriculture. The objective of this new composting model was to gain a clearer understanding of the dynamics of organic fractions during composting and to predict the final quality of composts. Organic matter was split into different compartments according to its degradability. The nature and size of these compartments were studied using a biochemical fractionation method. The evolution of each compartment and the microbial biomass were simulated, as was the total organic carbon loss corresponding to organic carbon mineralisation into CO(2). Twelve composting experiments from different feedstocks were used to calibrate and validate our model. We obtained a unique set of estimated parameters. Good agreement was achieved between the simulated and experimental results that described the evolution of different organic fractions, with the exception of some compost because of a poor simulation of the cellulosic and soluble pools. The degradation rate of the cellulosic fraction appeared to be highly variable and dependent on the origin of the feedstocks. The initial soluble fraction could contain some degradable and recalcitrant elements that are not easily accessible experimentally.

  11. Pyrolysis and mass spectrometry studies of meteoritic organic matter.

    PubMed

    Sephton, M A

    2012-01-01

    Meteorites are fragments of extraterrestrial materials that fall to the Earth's surface. The carbon-rich meteorites are derived from ancient asteroids that have remained relatively unprocessed since the formation of the Solar System 4.56 billion years ago. They contain a variety of extraterrestrial organic molecules that are a record of chemical evolution in the early Solar System and subsequent aqueous and thermal processes on their parent bodies. The major organic component (>70%) is a macromolecular material that resists straightforward solvent extraction. In response to its intractable nature, the most common means of investigating this exotic material involves a combination of thermal decomposition (pyrolysis) and mass spectrometry. Recently the approach has also been used to explore controversial claims of organic matter in meteorites from Mars. This review summarizes the pyrolysis data obtained from meteorites and outlines key interpretations.

  12. Characterizing Groundwater Sources of Organic Matter to Arctic Coastal Waters

    NASA Astrophysics Data System (ADS)

    Connolly, C. T.; Spencer, R. G.; Cardenas, M. B.; Bennett, P. C.; McNichol, A. P.; McClelland, J. W.

    2016-12-01

    The Arctic is projected to transition from a runoff-dominated system to a groundwater-dominated system as permafrost thaws due to climate change. This fundamental shift in hydrology is expected to increase groundwater flow to Arctic coastal waters, which may be a significant source of dissolved organic matter (DOM) to these waters—even under present conditions—that has been largely overlooked. Here we quantify and elucidate sources of groundwater DOM inputs to lagoons along the eastern Alaskan Beaufort Sea coast using an approach that combines concentration measurements and radiocarbon dating of groundwater, soil profiles, and soil leachable dissolved organic carbon (DOC). Samples were collected in late summer, when soil thaw depths (active layer) were near their maximum extent. As anticipated, the radiocarbon age of bulk soil organic matter increased with depth (modern - 6,100 yBP), while the amount of extractable DOC decreased with depth within the active layer. However, amounts of extractable DOC increased dramatically in thawed permafrost samples collected directly below the actively layer. Concentrations of DOM in groundwater (ranging from 902 to 5,118 μmolL-1 DOC) are one to two orders of magnitude higher than those measured in lagoons and nearby river water. In contrast, the 14C-DOC ages of groundwater (1,400 ± 718 s.d. yBP), lagoon water (1,750 yBP), and river water (1,610 yBP) are comparable. Together these results suggest that: (1) groundwater provides a highly concentrated input of old DOC to Arctic coastal waters; (2) groundwater DOM is likely sourced from organic matter spanning the entire soil profile; and (3) the DOM in rivers along the eastern Alaskan Beaufort Sea coast during late summer is strongly influenced by groundwater sources, but is much lower in concentration due to photo-mineralization and/or biological consumption. These results are key for assessing how changes in land-ocean export of organic matter as permafrost thaws will change

  13. Soft X-Ray Photoionizing Organic Matter from Comet Wild 2: Evidence for the Production of Organic Matter by Impact Processes

    NASA Technical Reports Server (NTRS)

    Zolensky, Michael E.; Wirick, S.; Flynn, G. J.; Jacobsen, C.; Na

    2011-01-01

    The Stardust mission collected both mineral and organic matter from Comet Wild 2 [1,2,3,4]. The organic matter discovered in Comet Wild 2 ranges from aromatic hydrocarbons to simple aliphatic chains and is as diverse and complex as organic matter found in carbonaceous chondrites and interplanetary dust particles.[3,5,6,7,8,9]. Compared to insoluble organic matter from carbonaceous chondrites the organic matter in Comet Wild 2 more closely resembles organic matter found in the IDPS both hydrous and anhydrous. Common processes for the formation of organic matter in space include: Fischer-Tropsch, included with this aqueous large body and moderate heating alterations; UV irradiation of ices; and; plasma formation and collisions. The Fischer-Tropsch could only occur on large bodies processes, and the production of organic matter by UV radiation is limited by the penetration depth of UV photons, on the order of a few microns or less for most organic matter, so once organic matter coats the ices it is formed from, the organic production process would stop. Also, the organic matter formed by UV irradiation would, by the nature of the process, be in-sensitive to photodissocation from UV light. The energy of soft X-rays, 280-300 eV occur within the range of extreme ultraviolet photons. During the preliminary examination period we found a particle that nearly completely photoionized when exposed to photons in the energy range 280-310eV. This particle experienced a long exposure time to the soft x-ray beam which caused almost complete mass loss so little chemical information was obtain. During the analysis of our second allocation we have discovered another particle that photoionized at these energies but the exposure time was limited and more chemical information was obtained.

  14. Mercury dilution by autochthonous organic matter in a fertilized mangrove wetland.

    PubMed

    Machado, Wilson; Sanders, Christian J; Santos, Isaac R; Sanders, Luciana M; Silva-Filho, Emmanoel V; Luiz-Silva, Wanilson

    2016-06-01

    A dated sediment core from a highly-fertilized mangrove wetland located in Cubatão (SE Brazil) presented a negative correlation between mercury (Hg) and organic carbon contents. This is an unusual result for a metal with well-known affinity to organic matter. A dilution of Hg concentrations by autochthonous organic matter explained this observation, as revealed by carbon stable isotopes signatures (δ(13)C). Mercury dilution by the predominant mangrove-derived organic matter counterbalanced the positive influences of algal-derived organic matter and clay contents on Hg levels, suggesting that deleterious effects of Hg may be attenuated. Considering the current paradigm on the positive effect of organic matter on Hg concentrations in coastal sediments and the expected increase in mangrove organic matter burial due to natural and anthropogenic stimulations of primary production, predictions on the influences of organic matter on Hg accumulation in mangrove wetlands deserve caution.

  15. ENVIRONMENTAL RESEARCH BRIEF: CHARACTERIZATION OF ORGANIC MATTER IN SOIL AND AQUIFER SOLIDS

    EPA Science Inventory

    The focus of this work was the evaluation of analytical methods to determine and characterize fractions of subsurface organic matter. Major fractions of total organic carbon (TOC) include: particulate organic carbon (POC) in aquifer material, dissolved organic carbon (DOC) and ...

  16. Early diagenesis of recently deposited organic matter: a 9-yr time-series study of a flood deposit

    NASA Astrophysics Data System (ADS)

    Tesi, T.; Goñi, M. A.; Langone, L.; Wheatcroft, R. A.; Miserocchi, S.; Bertotti, L.

    2012-04-01

    Because the preservation of organic carbon (OC) in river-dominated margins accounts for a significant fraction of OC burial in the ocean, biochemical studies must find novel ways to explicitly address the non-steadiness of these settings. In this study, we approached this issue by collecting event-beds soon after their emplacement (event-response sampling) and following their evolution with time (time-series analysis). In Fall 2000, the Po River (Italy) experienced a 100-yr return period flood that resulted in a thick deposit in the adjacent prodelta. Cores collected in the central prodelta after the flood event and over the following 9 years (8 sediment cores), allowed characterization of the event-strata in their initial state and documentation of their subsequent evolution. The characterization of sedimentary organic matter (OM) collected soon after the flood deposit emplacement and the description of its subsequent evolution with time provided extraordinary opportunity to investigate the reactivity of OM on a 9-yr time scale. Our analysis included the evaluation of the whole spectrum of CuO reaction products such as lignin phenols, p-hydroxy benzenes, benzoic acids, cutin-derived products, dicarboxylic acids, and fatty acids, as well as bulk organic carbon, nitrogen and carbon stable isotopes. Sedimentological characteristics were investigated using x-radiographs and sediment texture analyses whereas the evolution of sedimentary OM was evaluated via inventories of bulk elements and biomarkers. Remineralization of organic nitrogen and organic carbon occurred at similar rates (% change ~-17%) indicating that the overall elemental composition of sedimentary OM remained stable with time. This steadiness was confirmed by lack of temporal changes of the OC/TN ratio. Despite the steady OC/TN ratio, changes in δ13C revealed preferential loss of isotopically enriched organic material. Biomarker inventories indicated selective degradation during diagenesis, consistent

  17. Organic Matter as an Indicator of Soil Degradation

    NASA Astrophysics Data System (ADS)

    Romero Diaz, Asuncion; Damian Ruiz Sinoga, Jose

    2010-05-01

    Numerous and expensive physical-chemical tests are often carried out to determine the level of soil degration. This study was to find one property, as Organic Matter, which is usually analyzed for determine the soil degradation status. To do this 19 areas in the south and southeast of the Iberian Peninsula (provinces of Málaga, Granada, Almería y Murcia) were selected and a wide sampling process was carried out. Sampling points were spread over a wide pluviometric gradient (from 1100 mm/yr to 232 mm/yr) covering the range from Mediterranean wet to dry. 554 soil surface samples were taken from soil (0-10 cm) and the following properties were analyzed: Texture, Organic Matter (OM), Electric Conductivity (EC), Aggregate Stability (AE) y Cation Exchange Capacity (CEC). These properties were intercorrelated and also with rainfall and the K factor of soil erosion, calculated for each sampling point. Los results obtained by applying the Pearson correlation coefficient to the database shows how as rainfall increases so does OM content (0,97) and la CEC (0,89), but K factor (-0,80) reacts inversely. The content of OM in the soil is related to its biological activity and this in turn is the result of available wáter within the system and, consequently, rainfall. This is specially important in fragile and complex ecogeomorphological systems as is the case of the Mediterranean, where greater or lesser rainfall is similarly reflected in the levels of increase or decrease of soil organic matter. This affirmation is reinforced by linking the organic matter of the soil with other indicative properties such as CEC and erosion, as has been shown by various authors (Imeson y Vis, 1984; De Ploey & Poesen, 1985; Le Bissonnais, 1996; Boix-Fayos et al., 2001; Cammeraat y Imeson, 1998; Cerdá, 1998). As has been stated, there is a direct relationship between rainfall, organic matter content, cation exchange capacity, structural stability, and the resistence to soil erosion factor

  18. Organic matter interactions with natural manganese oxide and synthetic birnessite.

    PubMed

    Allard, Sébastien; Gutierrez, Leonardo; Fontaine, Claude; Croué, Jean-Philippe; Gallard, Hervé

    2017-04-01

    Redox reactions of inorganic and organic contaminants on manganese oxides have been widely studied. However, these reactions are strongly affected by the presence of natural organic matter (NOM) at the surface of the manganese oxide. Interestingly, the mechanism behind NOM adsorption onto manganese oxides remains unclear. Therefore, in this study, the adsorption kinetics and equilibrium of different NOM isolates to synthetic manganese oxide (birnessite) and natural manganese oxide (Mn sand) were investigated. Natural manganese oxide is composed of both amorphous and well-crystallised Mn phases (i.e., lithiophorite, birnessite, and cryptomelane). NOM adsorption on both manganese oxides increased with decreasing pH (from pH7 to 5), in agreement with surface complexation and ligand exchange mechanisms. The presence of calcium enhanced the rate of NOM adsorption by decreasing the electrostatic repulsion between NOM and Mn sand. Also, the adsorption was limited by the diffusion of NOM macromolecules through the Mn sand pores. At equilibrium, a preferential adsorption of high molecular weight molecules enriched in aromatic moieties was observed for both the synthetic and natural manganese oxide. Hydrophobic interactions may explain the adsorption of organic matter on manganese oxides. The formation of low molecular weight UV absorbing molecules was detected with the synthetic birnessite, suggesting oxidation and reduction processes occurring during NOM adsorption. This study provides a deep insight for both environmental and engineered systems to better understand the impact of NOM adsorption on the biogeochemical cycle of manganese.

  19. Production of Dissolved Organic Matter During Fungal Wood Rot Decay

    NASA Astrophysics Data System (ADS)

    Filley, T. R.; Jellison, J.; Goodell, B.; Kelley, S.; Davis, M.

    2002-12-01

    Dissolved organic matter mediates numerous biogeochemical processes in soil systems impacting subsurface microbial activity, redox chemistry, soil structure, and carbon and nitrogen sequestration. The structure and chemistry of DOM is a function of the inherited chemistry of the source material, the type of microbial action that has occurred, and selective interaction with mineral substrates. The type of fungal decomposition imparted to woody tissue is a major factor in determining the nature of DOM in forest soils. In order to investigate the relationship between fungal decomposition and the nature of DOM in coniferous forest soils we conducted 32-week inoculation studies on spruce sapwood with basidiomycete brown-rot wood decay fungi where leachable dissolved and colloidal organic matter was separated from decayed residue. A detailed examination of the organic fractions was conducted using 13C-labeled tetramethylammonium hydroxide thermochemolysis, solid-state 13C-NMR, and electrospray mass spectrometry. The progressive stages of microbial decay (cellulolytic and ligninolytic) were manifested in the chemical composition of the DOM which showed an evolution from a composition initially polysaccharide rich to one dominated by mildly oxidized and demethylated lignin. Upon removal of all polysaccharides at 16 weeks the DOM (up to 10% by weight of the original tissue) looked chemically distinct from the degraded residue

  20. Effects of Dissolved Organic Matter Source on Wetland Bacterial Metabolism

    NASA Astrophysics Data System (ADS)

    Ward, A. K.

    2005-05-01

    Wetlands are rich environments for organic matter production from a variety of wetland plant types. Investigations of the Talladega Wetland Ecosystem (TWE) in the southeastern U.S. show that bacterioplankton productivity is driven by dissolved organic carbon derived from wetland plants. The TWE is formed from a small coastal plain stream that has been dammed by beaver activity and resides in a forested catchment. In this study, bacterioplankton communities sampled from the wetland were amended with leachate from two different plants common in the TWE, the soft rush, Juncus effusus, and hazel alder, Alnus serrulata, and compared to unamended controls. The bacterioplankton response was examined by measuring bacterial carbon productivity and by an array of fluorescent microscope techniques used to distinguish metabolically active and non-active cells. Both plant leachates elicited rapid and significant increases in productivity and numbers of metabolically active bacterial cells. However, the timeframe of response, the magnitude of response, and the bacterial morphotypes varied depending on the leachate source. This study suggests that wetland bacterial communities contain different sub-component populations that may generally occur in low numbers, but that can adapt and respond rapidly to different sources of organic matter native to the wetland.

  1. Lead sequestration and species redistribution during soil organic matter decomposition

    USGS Publications Warehouse

    Schroth, A.W.; Bostick, B.C.; Kaste, J.M.; Friedland, A.J.

    2008-01-01

    The turnover of soil organic matter (SOM) maintains a dynamic chemical environment in the forest floor that can impact metal speciation on relatively short timescales. Here we measure the speciation of Pb in controlled and natural organic (O) soil horizons to quantify changes in metal partitioning during SOM decomposition in different forest litters. We provide a link between the sequestration of pollutant Pb in O-horizons, estimated by forest floor Pb inventories, and speciation using synchrotron-based X-ray fluorescence and X-ray absorption spectroscopy. When Pb was introduced to fresh forest Oi samples, it adsorbed primarily to SOM surfaces, but as decomposition progressed over two years in controlled experiments, up to 60% of the Pb was redistributed to pedogenic birnessite and ferrihydrite surfaces. In addition, a significant fraction of pollutant Pb in natural soil profiles was associated with similar mineral phases (???20-35%) and SOM (???65-80%). Conifer forests have at least 2-fold higher Pb burdens in the forest floor relative to deciduous forests due to more efficient atmospheric scavenging and slower organic matter turnover. We demonstrate that pedogenic minerals play an important role in surface soil Pb sequestration, particularly in deciduous forests, and should be considered in any assessment of pollutant Pb mobility. ?? 2008 American Chemical Society.

  2. Complexation of lead by organic matter in Luanda Bay, Angola.

    PubMed

    Leitão, Anabela; Santos, Ana Maria; Boaventura, Rui A R

    2015-10-01

    Speciation is defined as the distribution of an element among different chemical species. Although the relation between speciation and bioavailability is complex, the metal present as free hydrated ion, or as weak complexes able to dissociate, is usually more bioavailable than the metal incorporated in strong complexes or adsorbed on colloidal or particulate matter. Among the analytical techniques currently available, anodic stripping voltammetry (ASV) has been one of the most used in the identification and quantification of several heavy metal species in aquatic systems. This work concerns the speciation study of lead, in original (natural, non-filtered) and filtered water samples and in suspensions of particulate matter and sediments from Luanda Bay (Angola). Complexes of lead with organics were identified and quantified by differential pulse anodic stripping voltammetry technique. Each sample was progressively titrated with a Pb(II) standard solution until complete saturation of the organic ligands. After each addition of Pb(II), the intensity, potential and peak width of the voltammetric signal were measured. The results obtained in this work show that more than 95 % of the lead in the aquatic environment is bound in inert organic complexes, considering all samples from different sampling sites. In sediment samples, the lead is totally (100 %) complexed with ligands adsorbed on the particles surface. Two kinds of dominant lead complexes, very strong (logK >11) and strong to moderately strong (8< logK <11), were found, revealing the lead affinity for the stronger ligands.

  3. Lead Sequestration And Species Redistribution During Soil Organic Matter Decomposition

    SciTech Connect

    Schroth, A.W.; Bostick, B.C.; Kaste, J.M.; Friedland, A.J.

    2009-05-27

    The turnover of soil organic matter (SOM) maintains a dynamic chemical environment in the forest floor that can impact metal speciation on relatively short timescales. Here we measure the speciation of Pb in controlled and natural organic (O) soil horizons to quantify changes in metal partitioning during SOM decomposition in different forest litters. We provide a link between the sequestration of pollutant Pb in O-horizons, estimated by forest floor Pb inventories, and speciation using synchrotron-based X-rayfluorescence and X-ray absorption spectroscopy. When Pb was introduced to fresh forest O{sub i} samples, it adsorbed primarily to SOM surfaces, but as decomposition progressed over two years in controlled experiments, up to 60% of the Pb was redistributed to pedogenic birnessite and ferrihydrite surfaces. In addition, a significant fraction of pollutant Pb in natural soil profiles was associated with similar mineral phases ({approx}20--35%) and SOM ({approx}65--80%). Conifer forests have at least 2-fold higher Pb burdens in the forest floor relative to deciduous forests due to more efficient atmospheric scavenging and slower organic matter turnover. We demonstrate that pedogenic minerals play an important role in surface soil Pb sequestration, particularly in deciduous forests, and should be considered in any assessment of pollutant Pb mobility.

  4. Lead Sequestration and Species Redistribution During Soil Organic Matter Decomposition

    SciTech Connect

    Schroth,A.; Bostick, B.; Kaste, J.; Friedland, A.

    2008-01-01

    The turnover of soil organic matter (SOM) maintains a dynamic chemical environment in the forest floor that can impact metal speciation on relatively short timescales. Here we measure the speciation of Pb in controlled and natural organic (O) soil horizons to quantify changes in metal partitioning during SOM decomposition in different forest litters. We provide a link between the sequestration of pollutant Pb in O-horizons, estimated by forest floor Pb inventories, and speciation using synchrotron-based X-ray fluorescence and X-ray absorption spectroscopy. When Pb was introduced to fresh forest Oi samples, it adsorbed primarily to SOM surfaces, but as decomposition progressed over two years in controlled experiments, up to 60% of the Pb was redistributed to pedogenic birnessite and ferrihydrite surfaces. In addition, a significant fraction of pollutant Pb in natural soil profiles was associated with similar mineral phases ({approx}20-35%) and SOM ({approx}65-80%). Conifer forests have at least 2-fold higher Pb burdens in the forest floor relative to deciduous forests due to more efficient atmospheric scavenging and slower organic matter turnover. We demonstrate that pedogenic minerals play an important role in surface soil Pb sequestration, particularly in deciduous forests, and should be considered in any assessment of pollutant Pb mobility.

  5. Unraveling the chemical space of terrestrial and meteoritic organic matter

    NASA Astrophysics Data System (ADS)

    Schmitt-Kopplin, Philippe; Harir, Mourad; Hertkorn, Norbert; Kanawati, Basem; Ruf, Alexander; Quirico, Eric; Bonal, Lydie; Beck, Pierre; Gabelica, Zelimir

    2015-04-01

    In terrestrial environments natural organic matter (NOM) occurs in soils, freshwater and marine environments, in the atmosphere and represents an exceedingly complex mixture of organic compounds that collectively exhibits a nearly continuous range of properties (size-reactivity continuum). In these materials, the "classical" biogeosignatures of the (biogenic and geogenic) precursor molecules, like lipids, lignins, proteins and natural products have been attenuated, often beyond recognition, during a succession of biotic and abiotic (e.g. photo- and redox chemistry) reactions. Because of this loss of biochemical signature, these materials can be designated non-repetitive complex systems. The access to extra-terrestrial organic matter is given i.e. in the analysis of meteoritic materials. Numerous descriptions of organic molecules present in organic chondrites have improved our understanding of the early interstellar chemistry that operated at or just before the birth of our solar system. However, many molecular analyses are so far targeted toward selected classes of compounds with a particular emphasis on biologically active components in the context of prebiotic chemistry. Here we demonstrate that a non-targeted ultrahigh-resolution molecular analysis of the solvent-accessible organic fraction of meteorite extracted under mild conditions allows one to extend its indigenous chemical diversity to tens of thousands of different molecular compositions and likely millions of diverse structures. The description of the molecular complexity provides hints on heteroatoms chronological assembly, shock and thermal events and revealed recently new classes of thousands of novel organic, organometallic compounds uniquely found in extra-terrestrial materials and never described in terrestrial systems. This high polymolecularity suggests that the extraterrestrial chemodiversity is high compared to terrestrial relevant biological and biogeochemical-driven chemical space. (ultra

  6. Missing links in the root-soil organic matter continuum

    SciTech Connect

    O'Brien, Sarah L.; Iversen, Colleen M

    2009-01-01

    The soil environment remains one of the most complex and poorly understood research frontiers in ecology. Soil organic matter (SOM), which spans a continuum from fresh detritus to highly processed, mineral-associated organic matter, is the foundation of sustainable terrestrial ecosystems. Heterogeneous SOM pools are fueled by inputs from living and dead plants, driven by the activity of micro- and mesofauna, and are shaped by a multitude of abiotic factors. The specialization required to measure unseen processes that occur on a wide range of spatial and temporal scales has led to the partitioning of soil ecology research across several disciplines. In the organized oral session 'Missing links in the root-soil organic matter continuum' at the annual Ecological Society of America meeting in Albuquerque, NM, USA, we joined the call for greater communication and collaboration among ecologists who work at the root-soil interface (e.g. Coleman, 2008). Our goal was to bridge the gap between scientific disciplines and to synthesize disconnected pieces of knowledge from root-centric and soil-centric studies into an integrated understanding of belowground ecosystem processes. We focused this report around three compelling themes that arose from the session: (1) the influence of the rhizosphere on SOM cycling, (2) the role of soil heterotrophs in driving the transformation of root detritus to SOM, and (3) the controlling influence of the soil environment on SOM dynamics. We conclude with a discussion of new approaches for gathering data to bridge gaps in the root-SOM continuum and to inform the next generation of ecosystem models. Although leaf litter has often been considered to be the main source of organic inputs to soil, Ann Russell synthesized a convincing body of work demonstrating that roots, rather than surface residues, control the accumulation of SOM in a variety of ecosystems. Living roots, which are chemically diverse and highly dynamic, also influence a wide

  7. Method and apparatus for retorting a substance containing organic matter

    SciTech Connect

    Schulman, B.

    1980-07-01

    A description is given of an apparatus for converting a substance containing organic matter into hydrocarbon vapors and solids residue comprising: (A) a fluidized bed housing having an upstream end and a downstream end; (B) a substantially cylindrical retort, extending through and stationary relative to said fluidized bed housing and having an upstream end and a downstream end, each end being outside of said housing, the longitudinal axis of said retort being substantially parallel to a horizontal plane; (C) feeding means for feeding the substance containing organic matter into said retort, said feeding means communicating with the upstream portion of said retort; (D) means located within said retort for moving the substance containing organic matter from the upstream portion of said retort to the downstream portion thereof; (E) solids residue removing means for removing solids residue from said retort, said solids residue removing means communicating with the downstream portion of said retort; (F) solids residue introducing means for introducing said solids residue removed from said retort into said fluidized bed housing to employ said solids residue as particles of a fluidized bed, one end of said introducing means communicating with said solids residue removing means and the other end therof communicating with the upper upstream portion of said fluidized bed housing; (G) solids residue extracting means for extracting solids residue from said fluidized bed housing and communicating with the lower downstream portion fluidized bed housing; (H) fluidizing menas for maintaining within said fluidized bed housing a fluidized bed of heated particles of solids residue with which to heat said retort; (I) heating means for heating the particles; (J) hydrocarbon vapors removing means.

  8. Priming of soil organic matter decomposition in cryoturbated Arctic soils

    NASA Astrophysics Data System (ADS)

    Richter, A.; Wild, B.; Schnecker, J.; Rusalimova, O.

    2012-12-01

    The Arctic is subjected to particularly high rates of warming, with profound consequences for the carbon cycle: on the one hand plant productivity and C storage in plant biomass have been shown to increase strongly in many parts of the Arctic, on the other hand, increasing rates of soil organic matter (SOM) decomposition have been reported. One of the possibilities that could reconcile these observations is, that increased plant growth may lead to increased root exudation rates, which are known to stimulate microbial turnover of organic matter under certain circumstances, in a process termed "priming" of SOM. Two mechanisms have been brought forward that may be responsible for priming: first, easily assimilable material exuded by plant roots may help microbes to overcome their energy limitation and second, this input of labile carbon could lead to a nitrogen limitation of the microbial community and lead to nitrogen mining, i.e. decomposition of N-rich SOM. We here report on an incubation study with arctic soil investigating potential priming of SOM decomposition in organic topsoil horizons, cryoturbated organic matter and subsoil mineral horizons of tundra soil from the Taymyr peninsula in Siberia. We used arctic soils, that are characterized by cryoturbation (mixing of soil layers due to freezing and thawing), for this study. Turbated cryosols store more than 580 Gt C globally, a significant proportion of which is stored in the cryoturbated organic matter. We hypothesized that an increased availability of labile compounds would increase SOM decomposition rates, and that this effect would be strongest in horizons with a low natural availability of labile C, i.e. in the mineral subsoil. We amended soils with 13C labelled glucose, cellulose, amino acids or proteins, and measured the mineralization of SOM C as well as microbial community composition and potential activities of extracellular enzymes. Our results demonstrate that topsoil organic, cryoturbated and

  9. Persistence of soil organic matter as an ecosystem property

    SciTech Connect

    Schmidt, M.W.; Torn, M. S.; Abiven, S.; Dittmar, T.; Guggenberger, G.; Janssens, I.A.; Kleber, M.; Kögel-Knabner, I.; Lehmann, J.; Manning, D.A.C.; Nannipieri, P.; Rasse, D.P.; Weiner, S.; Trumbore, S.E.

    2011-08-15

    Globally, soil organic matter (SOM) contains more than three times as much carbon as either the atmosphere or terrestrial vegetation. Yet it remains largely unknown why some SOM persists for millennia whereas other SOM decomposes readily—and this limits our ability to predict how soils will respond to climate change. Recent analytical and experimental advances have demonstrated that molecular structure alone does not control SOM stability: in fact, environmental and biological controls predominate. Here we propose ways to include this understanding in a new generation of experiments and soil carbon models, thereby improving predictions of the SOM response to global warming.

  10. Characterization of Biologically Produced Colored Dissolved Organic Matter in Seawater

    DTIC Science & Technology

    2005-11-29

    Seritti, A. Environ. Tech. 1993, 14, 94.1-948. (19) Lombardi, A.T.; Jardim, W.F. Water Research. 1999, 33, 512-520. (20) Parlanti, E .; Morin , B.; Vacher...REPORT DOCUMENTATION PAGE Form Approved Public reporting burden for this collection of I•mo,,ation , e dlat ed to average hour per response. ind•uding... e -mail: drepeta(atwhoi.edu Grant# N00014-98-1-0579 & N00014-03-1-0387 Chromophoric, or colored dissolved organic matter (CDOM), influences the

  11. Aquatic Organic Matter Fluorescence - from phenomenon to application

    NASA Astrophysics Data System (ADS)

    Reynolds, Darren

    2014-05-01

    The use of fluorescence to quantify and characterise aquatic organic matter in river, ocean, ground water and drinking and waste waters has come along way since its discovery as a phenomenon in the early 20th century. For example, there are over 100 papers published each year in international peer reviewed journals, an order of magnitude increase since a decade ago (see Figure taken from ISI database from 1989 to 2007 for publications in the fields of river water and waste water). Since then it has been extensively used as a research tool since the 1990's by scientists and is currently used for a wide variety of applications within a number of sectors. Universities, organisations and companies that research into aquatic organic matter have either recently readily use appropriate fluorescence based techniques and instrumentation. In industry and government, the technology is being taken up by environmental regulators and water and wastewater companies. This keynote presentation will give an overview of aquatic organic matter fluorescence from its conception as a phenomenon through to its current use in a variety of emerging applications within the sectors concerned with understanding, managing and monitoring the aquatic environment. About the Speaker Darren Reynolds pioneered the use of fluorescence spectroscopy for the analysis of wastewaters in the 1990's. He currently leads a research group within the Centre for Research in Biosciences and sits on the Scientific Advisory Board for the Institute of Bio-Sensing Technology at the University of the West of England, Bristol. He is a multidisciplinary scientist concerned with the development of technology platforms for applications in the fields of environment/agri-food and health. His current research interests include the development of optical technologies and techniques for environmental and biological sensing and bio-prospecting applications. He is currently involved in the development and use of synthetic biology

  12. Persistence of soil organic matter as an ecosystem property.

    PubMed

    Schmidt, Michael W I; Torn, Margaret S; Abiven, Samuel; Dittmar, Thorsten; Guggenberger, Georg; Janssens, Ivan A; Kleber, Markus; Kögel-Knabner, Ingrid; Lehmann, Johannes; Manning, David A C; Nannipieri, Paolo; Rasse, Daniel P; Weiner, Steve; Trumbore, Susan E

    2011-10-05

    Globally, soil organic matter (SOM) contains more than three times as much carbon as either the atmosphere or terrestrial vegetation. Yet it remains largely unknown why some SOM persists for millennia whereas other SOM decomposes readily--and this limits our ability to predict how soils will respond to climate change. Recent analytical and experimental advances have demonstrated that molecular structure alone does not control SOM stability: in fact, environmental and biological controls predominate. Here we propose ways to include this understanding in a new generation of experiments and soil carbon models, thereby improving predictions of the SOM response to global warming.

  13. Redox effects on the microbial degradation of refractory organic matter in marine sediments

    NASA Astrophysics Data System (ADS)

    Reimers, Clare E.; Alleau, Yvan; Bauer, James E.; Delaney, Jennifer; Girguis, Peter R.; Schrader, Paul S.; Stecher, Hilmar A.

    2013-11-01

    Microbially mediated reduction-oxidation (redox) reactions are often invoked as being the mechanisms by which redox state influences the degradation of sedimentary organic matter (OM) in the marine environment. To evaluate the effects of elevated, oscillating and reduced redox potentials on the fate of primarily aged, mineral-adsorbed OM contained in continental shelf sediments, we used microbial fuel cells to control redox state within and around marine sediments, without amending the sediments with reducing or oxidizing substances. We subsequently followed electron fluxes in the redox elevated and redox oscillating treatments, and related sediment chemical, isotopic and bacterial community changes to redox conditions over a 748-day experimental period. The electron fluxes of the elevated and oscillating redox cells were consistent with models of organic carbon (OC) oxidation with time-dependent first-order rate constants declining from 0.023 to 0.005 y-1, in agreement with rate constants derived from typical OC profiles and down core ages of offshore sediments, or from sulfate reduction rate measurements in similar sediments. Moreover, although cumulative electron fluxes were higher in the continuously elevated redox treatment, incremental rates of electron harvesting in the two treatments converged over the 2 year experiment. These similar rates were reflected in chemical indicators of OM metabolism such as dissolved OC and ammonia, and particulate OC concentrations, which were not significantly different among all treatments and controls over the experimental time-scale. In contrast, products of carbonate and opal dissolution and metal mobilization showed greater enrichments in sediments with elevated and oscillating redox states. Microbial community composition in anode biofilms and surrounding sediments was assessed via high-throughput 16S rRNA gene sequencing, and these analyses revealed that the elevated and oscillatory redox treatments led to the

  14. Association of organic matter and ferrihydrite: adsorption versus coprecipitation

    NASA Astrophysics Data System (ADS)

    Eusterhues, K.; Rennert, T.; Knicker, H.; Totsche, K. U.

    2009-04-01

    Ferrihydrite (Fh) - even if present at low concentrations - may control the available surface area and therefore, the behaviour of nutrients and pollutants in soils. Its precipitation often takes place in the presence of dissolved organic matter (OM). This involves processes such as adsorption, but also coprecipitation, flocculation/coagulation and poisoning of crystal growth. In this study, we compare coprecipitation of organic matter and ferrihydrite with pure adsorption of OM on ferrihydrite. We therefore prepared an adsorption series and a coprecipitation series using (i) water extractable organic matter from a forest topsoil and (ii) sulfite extractable lignin from paper. Products were investigated by N2-adsorption, XRD and FTIR. In coprecipitation experiments with both types of OM we observed a strong interference of the organic molecules with crystal growth leading to smaller Fh crystals, increased lattice spacings and a lower crystallinity. The highest achieved C loadings were found at approximately 200 mg C per g Fh for the adsorption and coprecipitation of the soil extract as well as for the adsorption of lignin. Coprecipitation of lignin, in contrast, resulted in a much higher maximum loading of 360 mg C per g Fh. The FTIR spectrum of the unreacted soil extract is mainly characterized by carboxyl C and polysaccharide C, with a smaller contribution of phenolic C. Spectra of the adsorbed or coprecipitated soil extract reveal weaker bands and lowered wave numbers indicating removal from solution followed by the formation of chemical bonds between the organic species and Fh by inner-sphere surface complexes. The FTIR spectrum of the lignin material shows a strong contribution of carboxyl C, polysaccharide C, and several aromatic C species. Again, all of these C species seem to form surface complexes after reaction with Fh in adsorption and coprecipitation experiments. Interestingly, at low initial C concentrations in all experiments the sorption of carboxyl

  15. Conservative or reactive? Mechanistic chemical perspectives on organic matter stability

    NASA Astrophysics Data System (ADS)

    Koch, Boris

    2016-04-01

    Carbon fixation by terrestrial and marine primary production has a fundamental seasonal effect on the atmospheric carbon content and it profoundly contributes to long-term carbon storage in form of organic matter (OM) in soils, water, and sediments. The efficacy of this sequestration process strongly depends on the degree of OM persistence. Therefore, one of the key issues in dissolved and particulate OM research is to assess the stability of reservoirs and to quantify their contribution to global carbon fluxes. Incubation experiments are helpful to assess OM stability during the first, early diagenetic turnover induced by sunlight or microbes. However, net carbon fluxes within the global carbon cycle also act on much longer time scales, which are not amenable in experiments. It is therefore critical to improve our mechanistic understanding to be able to assess potential future changes in the organic matter cycle. This session contribution highlights some achievements and open questions in the field. An improved mechanistic understanding of OM turnover particularly depends on the molecular characterization of biogeochemical processes and their kinetics: (i) in soils and sediments, aggregation/disaggregation of OM is primarily controlled by its molecular composition. Hence, the chemical composition determines the transfer of organic carbon from the large particulate to the small dissolved organic matter reservoir - an important substrate for microbial metabolism. (ii) In estuaries, dissolved organic carbon gradients usually suggest conservative behavior, whereas molecular-level studies reveal a substantial chemical modification of terrestrial DOM along the land-ocean interface. (iii) In the ocean, previous studies have shown that the recalcitrance of OM depends on bulk concentration and energy yield. However, ultrahigh resolution mass spectrometry in combination with radiocarbon analyses also emphasized that stability is tightly connected to molecular composition

  16. Effect of organic fertilizers derived dissolved organic matter on pesticide sorption and leaching.

    PubMed

    Li, Kun; Xing, Baoshan; Torello, William A

    2005-03-01

    Incorporation of organic fertilizers/amendments has been, and continues to be, a popular strategy for golf course turfgrass management. Dissolved organic matter (DOM) derived from these organic materials may, however, facilitate organic chemical movement through soils. A batch equilibrium technique was used to evaluate the effects of organic fertilizer-derived DOM on sorption of three organic chemicals (2,4-D, naphthalene and chlorpyrifos) in USGA (United States Golf Association) sand, a mixed soil (70% USGA sand and 30% native soil) and a silt loam soil (Typic Fragiochrept). DOM was extracted from two commercial organic fertilizers. Column leaching experiments were also performed using USGA sand. Sorption experiments showed that sorption capacity was significantly reduced with increasing DOM concentration in solution for all three chemicals. Column experimental results were consistent with batch equilibrium data. These results suggest that organic fertilizer-derived DOM might lead to enhanced transport of applied chemicals in turf soils.

  17. Do organic matter matter? Contribution of organic matter on scavenging and fractionation of natural radionuclides in the Oceanic Flux Program (OFP) site of Bermuda

    NASA Astrophysics Data System (ADS)

    Chuang, C.; Santschi, P. H.; Conte, M. H.; Schumann, D.; Ayranov, M.

    2012-12-01

    Natural particle-reactive radionuclides, 234Th, 233Pa, 210Po, 210Pb and 7Be, have been used for estimating particulate organic carbon (POC) export flux in the ocean for decades. However, by simply relying on empirically determined isotope ratios to POC and other parameters, sometimes results from field studies are puzzling and become controversial (e.g., one is summarized in Li, 2005). The picture becomes clearer when it was noticed that a missing fraction, e.g., natural organic matter, could be the cause. For example, a series of field and lab studies demonstrated that biopolymers excreted by marine micro-organisms are likely carrier molecules for a number of these isotopes (e.g., Guo et al., 2002; Quigley et al., 2002; Santschi et al., 2003; Roberts et al., 2009; Hung et al., 2010; Xu et al., 2011; Hung et al., 2012; Yang et al., 2012). To examine the effect of organic composition of the particle on the scavenging and fractionation of selected natural radionuclides (e.g., Th, Pa, Pb, Po, Be), organic composition (e.g., protein, polysaccharides, uronic acid, siderophore and amino acid contents, and etc.) and particle-water partition coefficients (Kd) were determined for sediment trap material collected in the Oceanic Flux Program (OFP) site of Bermuda (500, 1500 and 3200 m). Results showed that different organic components contribute differently to the fractionation of different radionuclides from the three depths. We conclude that natural organic matter control on the particle-water partition coefficients cannot be ignored.

  18. Organic Matter Sulfurization in the Cariaco Water Column Revealed by High-Sensitivity and Compound-Specific d34S Analyses.

    NASA Astrophysics Data System (ADS)

    Raven, M. R.; Sessions, A. L.; Adkins, J. F.; Thunell, R.

    2015-12-01

    Organic matter burial in marine sediments is a major process in the global carbon cycle, and enhanced organic matter burial is often associated with periods of global climatic and ecological change. Still, we have only a limited understanding of the processes that drive enhanced OM burial during oxygen-deficient conditions. Abiotic OM sulfurization has the potential to enhance the preservation of OM, but for this process to be significant it must compete with heterotrophic remineralization, most of which occurs before sinking particles reach the sea floor. We investigate the sources of sulfur to sinking particles in a modern marine basin using samples from the CARIACO fixed sediment trap time-series, applying recently developed methods for d34S analysis of small (≥20 nmol) sulfur pools and individual volatile organosulfur compounds. Relative to expectations for planktonic biomass, we find that sinking particles are both sulfur-rich and 34S-depleted. Higher apparent fluxes of 34S-depleted organic sulfur are associated with high OM export from the surface ocean, low terrestrial inputs, and high concentrations of both elemental S and the dominant non-polar organosulfur compound, C20 thiophene. We conclude that OM sulfurization is occurring in particles sinking through the Cariaco water column on timescales of days or less. Depending on the frequency of high OM export events, we estimate that this rapid sulfurization delivers roughly half of the total organic S present at 5 cm depth in underlying sediments. Accordingly, many OM-rich deposits in the geologic record may represent the products of water column sulfurization. This process provides a strong mechanistic feedback between oxygen deficiency and OM preservation.

  19. Influence of dissolved organic carbon content on modelling natural organic matter acid-base properties.

    PubMed

    Garnier, Cédric; Mounier, Stéphane; Benaïm, Jean Yves

    2004-10-01

    Natural organic matter (NOM) behaviour towards proton is an important parameter to understand NOM fate in the environment. Moreover, it is necessary to determine NOM acid-base properties before investigating trace metals complexation by natural organic matter. This work focuses on the possibility to determine these acid-base properties by accurate and simple titrations, even at low organic matter concentrations. So, the experiments were conducted on concentrated and diluted solutions of extracted humic and fulvic acid from Laurentian River, on concentrated and diluted model solutions of well-known simple molecules (acetic and phenolic acids), and on natural samples from the Seine river (France) which are not pre-concentrated. Titration experiments were modelled by a 6 acidic-sites discrete model, except for the model solutions. The modelling software used, called PROSECE (Programme d'Optimisation et de SpEciation Chimique dans l'Environnement), has been developed in our laboratory, is based on the mass balance equilibrium resolution. The results obtained on extracted organic matter and model solutions point out a threshold value for a confident determination of the studied organic matter acid-base properties. They also show an aberrant decreasing carboxylic/phenolic ratio with increasing sample dilution. This shift is neither due to any conformational effect, since it is also observed on model solutions, nor to ionic strength variations which is controlled during all experiments. On the other hand, it could be the result of an electrode troubleshooting occurring at basic pH values, which effect is amplified at low total concentration of acidic sites. So, in our conditions, the limit for a correct modelling of NOM acid-base properties is defined as 0.04 meq of total analysed acidic sites concentration. As for the analysed natural samples, due to their high acidic sites content, it is possible to model their behaviour despite the low organic carbon concentration.

  20. The abiotic degradation of soil organic matter to oxalic acid

    NASA Astrophysics Data System (ADS)

    Studenroth, Sabine; Huber, Stefan; Schöler, H. F.

    2010-05-01

    The abiotic degradation of soil organic matter to volatile organic compounds was studied intensely over the last years (Keppler et al., 2000; Huber et al., 2009). It was shown that soil organic matter is oxidised due to the presence of iron (III), hydrogen peroxide and chloride and thereby produces diverse alkyl halides, which are emitted into the atmosphere. The formation of polar halogenated compounds like chlorinated acetic acids which are relevant toxic environmental substances was also found in soils and sediments (Kilian et al., 2002). The investigation of the formation of other polar halogenated and non-halogenated compounds like diverse mono- and dicarboxylic acids is going to attain more and more importance. Due to its high acidity oxalic acid might have impacts on the environment e.g., nutrient leaching, plant diseases and negative influence on microbial growth. In this study, the abiotic formation of oxalic acid in soil is examined. For a better understanding of natural degradation processes mechanistic studies were conducted using the model compound catechol as representative for structural elements of the humic substances and its reaction with iron (III) and hydrogen peroxide. Iron is one of the most abundant elements on earth and hydrogen peroxide is produced by bacteria or through incomplete reduction of oxygen. To find suitable parameters for an optimal reaction and a qualitative and quantitative analysis method the following reaction parameters are varied: concentration of iron (III) and hydrogen peroxide, time dependence, pH-value and influence of chloride. Analysis of oxalic acid was performed employing an ion chromatograph equipped with a conductivity detector. The time dependent reaction shows a relatively fast formation of oxalic acid, the optimum yield is achieved after 60 minutes. Compared to the concentration of catechol an excess of hydrogen peroxide as well as a low concentration of iron (III) are required. In absence of chloride the

  1. Nature and transformation of dissolved organic matter in treatment wetlands.

    PubMed

    Barber, L B; Leenheer, J A; Noyes, T I; Stiles, E A

    2001-12-15

    This investigation into the occurrence, character, and transformation of dissolved organic matter (DOM) in treatment wetlands in the western United States shows that (i) the nature of DOM in the source water has a major influence on transformations that occur during treatment, (ii) the climate factors have a secondary effect on transformations, (iii) the wetlands receiving treated wastewater can produce a net increase in DOM, and (iv) the hierarchical analytical approach used in this study can measure the subtle DOM transformations that occur. As wastewater treatment plant effluent passes through treatment wetlands, the DOM undergoes transformation to become more aromatic and oxygenated. Autochthonous sources are contributed to the DOM, the nature of which is governed by the developmental stage of the wetland system as well as vegetation patterns. Concentrations of specific wastewater-derived organic contaminants such as linear alkylbenzene sulfonate, caffeine, and ethylenediaminetetraacetic acid were significantly attenuated by wetland treatment and were not contributed by internal loading.

  2. Morphological Study of Insoluble Organic Matter Residues from Primitive

    NASA Technical Reports Server (NTRS)

    Changela, H. G.; Stroud, R. M.; Peeters, Z.; Nittler, L. R.; Alexander, C. M. O'D.; DeGregorio, B. T.; Cody, G. D.

    2012-01-01

    Insoluble organic matter (IOM) constitutes a major proportion, 70-99%, of the total organic carbon found in primitive chondrites [1, 2]. One characteristic morphological component of IOM is nanoglobules [3, 4]. Some nanoglobules exhibit large N-15 and D enrichments relative to solar values, indicating that they likely originated in the ISM or the outskirts of the protoplanetary disk [3]. A recent study of samples from the Tagish Lake meteorite with varying levels of hydrothermal alteration suggest that nanoglobule abundance decreases with increasing hydrothermal alteration [5]. The aim of this study is to further document the morphologies of IOM from a range of primitive chondrites in order to determine any correlation of morphology with petrographic grade and chondrite class that could constrain the formation and/or alteration mechanisms.

  3. Nature and transformation of dissolved organic matter in treatment wetlands

    USGS Publications Warehouse

    Barber, L.B.; Leenheer, J.A.; Noyes, T.I.; Stiles, E.A.

    2001-01-01

    This investigation into the occurrence, character, and transformation of dissolved organic matter (DOM) in treatment wetlands in the western United States shows that (i) the nature of DOM in the source water has a major influence on transformations that occur during treatment, (ii) the climate factors have a secondary effect on transformations, (iii) the wetlands receiving treated wastewater can produce a net increase in DOM, and (iv) the hierarchical analytical approach used in this study can measure the subtle DOM transformations that occur. As wastewater treatment plant effluent passes through treatment wetlands, the DOM undergoes transformation to become more aromatic and oxygenated. Autochthonous sources are contributed to the DOM, the nature of which is governed by the developmental stage of the wetland system as well as vegetation patterns. Concentrations of specific wastewaterderived organic contaminants such as linear alkylbenzene sulfonate, caffeine, and ethylenediaminetetraacetic acid were significantly attenuated by wetland treatment and were not contributed by internal loading.

  4. Carbon isotope fractionation of sapropelic organic matter during early diagenesis

    USGS Publications Warehouse

    Spiker, E. C.; Hatcher, P.G.

    1984-01-01

    Study of an algal, sapropelic sediment from Mangrove Lake, Bermuda shows that the mass balance of carbon and stable carbon isotopes in the major organic constituents is accounted for by a relatively straightforward model of selective preservation during diagenesis. The loss of 13C-enriched carbohydrates is the principal factor controlling the intermolecular mass balance of 13C in the sapropel. Results indicate that labile components are decomposed leaving as a residual concentrate in the sediment an insoluble humic substance that may be an original biochemical component of algae and associated bacteria. An overall decrease of up to about 4??? in the ?? 13C values of the organic matter is observed as a result of early diagenesis. ?? 1984.

  5. Literature review of organic matter transport from marshes

    NASA Technical Reports Server (NTRS)

    Dow, D. D.

    1982-01-01

    A conceptual model for estimating a transport coefficient for the movement of nonliving organic matter from wetlands to the adjacent embayments was developed in a manner that makes it compatible with the Earth Resources Laboratory's Productive Capacity Model. The model, which envisages detritus movement from wetland pixels to the nearest land-water boundary followed by movement within the water column from tidal creeks to the adjacent embayment, can be transposed to deal with only the interaction between tidal water and the marsh or to estimate the transport from embayments to the adjacent coastal waters. The outwelling hypothesis postulated wetlands as supporting coastal fisheries either by exporting nutrients, such as inorganic nitrogen, which stimulated the plankton-based grazing food chain in the water column, or through the export of dissolved and particulate organic carbon which provided a benthic, detritus-based food web which provides the food source for the grazing food chain in a more indirect fashion.

  6. Dissolved Organic Matter in the Yukon River Basin

    NASA Astrophysics Data System (ADS)

    Aiken, G.; Striegl, R.; Schuster, P.

    2004-12-01

    Source materials, watershed geochemistry, oxidative processes and hydrology exert strong influences on the nature and reactivity of dissolved organic matter (DOM) in aquatic systems. At present, a critical question in carbon cycling is how climate change could alter the fate and chemical nature of dissolved organic carbon (DOC) released from watersheds, particularly those underlain by permafrost, and transported to rivers, lakes, estuaries and coastal waters. The spatial and temporal variability of DOM in surface waters associated with the Yukon River are being studied to better define processes controlling DOM in this system. Like many northern ecosystems, the Yukon River Basin is experiencing melting permafrost, drying of upland soils and changing wetland environments. Study results indicate that the transport of DOM in the river and its major tributaries is strongly seasonally dependent. Specific ultraviolet absorbance (SUVA) data, an excellent indicator of aromatic carbon content of DOM, also indicate a large variation in the chemical nature of the organic matter transported by the river. Lowest DOC concentrations and SUVA values were observed for samples collected in the winter under low flow conditions and for tributaries dominated by ground water inputs. Greatest DOC concentrations and SUVA values were measured on samples collected during the spring on the leading part of the hydrograph. High SUVA values are indicative of greater amounts of organic material originating from higher plants that are present in upper soil horizons and wetlands of the watershed. Aquatic humic substances collected from the Yukon River during the snowmelt period were found to have low nitrogen contents and greater amounts of aromatic C relative to samples from other aquatic environments. Low N content and high aromaticity are indicative of humic substances evolved from higher plant sources with little alteration resulting from microbial degradation or soil interactions. In addition

  7. Biomimetic remineralization of resin-bonded acid-etched dentin.

    PubMed

    Tay, F R; Pashley, D H

    2009-08-01

    Degradation of denuded collagen within adhesive resin-infiltrated dentin is a pertinent problem in dentin bonding. A biomimetic remineralization scheme that incorporates non-classic crystallization pathways of fluidic amorphous nanoprecursors and mesoscopic transformation has been successful in remineralizing resin-free, acid-etched dentin, with evidence of intrafibrillar and interfibrillar remineralization. This study tested the hypothesis that biomimetic remineralization provides a means for remineralizing incompletely infiltrated resin-dentin interfaces created by etch-and-rinse adhesives. The remineralization medium consists of a Portland cement/simulated body fluid that includes polyacrylic acid and polyvinylphosphonic acid biomimetic analogs for amorphous calcium phosphate dimension regulation and collagen targeting. Both interfibrillar and intrafibrillar apatites became readily discernible within the hybrid layers after 2-4 months. In addition, intra-resin apatite clusters were deposited within the porosities of the adhesive resin matrices. The biomimetic remineralization scheme provides a proof-of-concept for the adoption of nanotechnology as an alternative strategy to extend the longevity of resin-dentin bonds.

  8. High-resolution PS-OCT of enamel remineralization

    NASA Astrophysics Data System (ADS)

    Can, Anna M.; Darling, Cynthia L.; Fried, Daniel

    2008-02-01

    Previous studies have demonstrated that Polarization Sensitive Optical Coherence Tomography (PS-OCT) can be used to image the remineralization of early artificial caries lesions. However, the depth resolution of the imaging system employed in those previous studies was limited and the outer surface structure of the lesions were not resolved as clearly as desired. The purpose of this study was to repeat the earlier remineralization study using a broadband light-source of higher resolution to determine if there can be improved resolution of the remineralized surface zones of the lesions. An all polarization-maintaining fiber based PS-OCT system operating at 1310-nm was used to acquire polarization resolved images of bovine enamel surfaces exposed to a demineralizing solution at pH-4.9 followed by a fluoride containing remineralizing solution at pH-7.0 containing 2-ppm fluoride. The structure of surface zones could be clearly resolved in the samples that remineralized using PS-OCT. PS-OCT measured a significant (p<0.05) reduction in the integrated reflectivity between the severity of the lesions that were exposed to the remineralization solution and those that were not. The lesion depth and mineral loss was also measured with polarized light microscopy and transverse microradiography after sectioning the enamel blocks. These results show that PS-OCT can be used to non-destructively monitor the remineralization potential of anti-caries agents.

  9. Dissolved organic matter photolysis in Canadian arctic thaw ponds

    NASA Astrophysics Data System (ADS)

    Laurion, Isabelle; Mladenov, Natalie

    2013-09-01

    The abundant thaw lakes and ponds in the circumarctic receive a new pool of organic carbon as permafrost peat soils degrade, which can be exposed to significant irradiance that potentially increases as climate warms and ice cover shortens. Exposure to sunlight is known to accelerate the transformation of dissolved organic matter (DOM) into molecules that can be more readily used by microbes. We sampled the water from two common classes of ponds found in the ice-wedge system of continuous permafrost regions of Canada, polygonal and runnel ponds, and followed the transformation of DOM over 12 days by looking at dissolved organic carbon (DOC) concentration and DOM absorption and fluorescence properties. The results indicate a relatively fast decay of color (3.4 and 1.6% loss d-1 of absorption at 320 nm for the polygonal and runnel pond, respectively) and fluorescence (6.1 and 8.3% loss d-1 of total fluorescent components, respectively) at the pond surface, faster in the case of humic-like components, but insignificant losses of DOC over the observed period. This result indicates that direct DOM mineralization (photochemical production of CO2) is apparently minor in thaw ponds compared to the photochemical transformation of DOM into less chromophoric and likely more labile molecules with a greater potential for microbial mineralization. Therefore, DOM photolysis in arctic thaw ponds can be considered as a catalytic mechanism, accelerating the microbial turnover of mobilized organic matter from thawing permafrost and the production of greenhouse gases, especially in the most shallow ponds. Under a warming climate, this mechanism will intensify as summers lengthen.

  10. Temperature and organic matter controls on hyporheic greenhouse gas production

    NASA Astrophysics Data System (ADS)

    Comer-Warner, S.; Romeijn, P.; Krause, S.; Hannah, D. M.; Gooddy, D.

    2016-12-01

    The region of groundwater and surface water mixing, known as the hyporheic zone, has recently attracted interest as an area of greenhouse gas (GHG) production. Although high concentrations of GHG have been found in these environments, the drivers of hyporheic GHG production remain poorly understood. Here we present the results of a microcosm incubation experiment, designed to determine the effect of multiple environmental parameters on GHG production. Three sediment types, representing a gradient of organic matter contents, from two contrasting UK lowland rivers (sandstone and chalk), were incubated for 29 hours. Experiments were performed at five temperature treatments between 5 and 25°C, and the microbial metabolism of each microcosm was determined using the smart tracer Resazurin. Headspace concentrations of carbon dioxide, methane and nitrous oxide were measured to determine the effect of these environmental parameters on GHG production, and establish their roles as drivers of GHG production in the hyporheic zone. Our results indicate strong temperature controls of GHG production, overlapping with the observed impacts of varying organic matter content of different sediments. Experimental findings indicate that increased hyporheic temperatures during increasing baseflow and drought conditions may significantly enhance sediment respiration, and thus, GHG emissions from the streambed interface. This research advances understanding of drivers of whole stream carbon and nitrogen budgets, as well as the role of groundwater-surface water interfaces in GHG emissions, and allows the interaction of these controls to be assessed.

  11. Speciation of The Particulate Organic Matter In Three Remote Areas

    NASA Astrophysics Data System (ADS)

    Masclet, Pierre; Marchand, Nicolas; Jaffrezo, Jean Luc; Besombes, Jean Luc

    Total particulate matter was collected as part of three programs between 1999 and 2001 (EAAS in Finland, ESOMPTE in Marseille/Fos and POVA in french alpine valleys). The speciation of the particulate organic matter (POM) was performed by Gas Chromatography or HPLC coupled with a mass spectrometer. 13 organic families were identified in the 245 samples collected. The presence of some functional groups (- COOH; - OH and - CHO) and the carbon chain length are used in order to identify the sources of the particulate pollutants and the physicochemical behaviour during the long range atmospheric transport of the aerosol. The composition of the POM differs depending on the season (the secondary fraction reaches 27 % in summer and only 6% in winter) and on the remoteness of the sources. Alkanes are always the most abundant compounds. Polycyclic aromatic hydrocarbons, alcohols, esters, carboxylic acids and monoaromatic hydrocarbons are present in significant abundance. Some alkenes, aldehydes, ether oxydes, ketones and halocompounds are also found. Alcohols are more abundant in aerosols collected close to marine sites. Long carbon chain esters are mostly found in aerosols collected in high density vegetation areas and relatively high concentrations of PAH are measured in aerosols collected close to highly populated areas. These three families are good geochemical tracers, respectively of marine, biogenic and anthropic sources.

  12. Seasonal changes in photochemical properties of dissolved organic matter

    NASA Astrophysics Data System (ADS)

    Porcal, P.; Dillon, P. J.; Molot, L. A.

    2013-03-01

    The fate of dissolved organic matter (DOM) in lakes and streams is significantly affected by photochemical transformation of DOM. A series of laboratory photochemical experiments was conducted to describe long-term changes in photochemical properties of DOM. The stream samples used in this study originated from three different catchments on the southern-most part of the Boreal ecozone near Dorset, Ontario, Canada. A first-order kinetics equation was used to model photochemical degradation of DOM and the kinetic rate constant, K, was used as an indicator of photochemical properties of DOM. Highest Kwas observed in samples from the catchment dominated by coniferous forest while the lowest K was measured in the deciduous catchment. Kinetic rate constants from all three catchments showed a sinusoidal pattern during the hydrological year. K increased steadily during autumn and winter and decreased during spring and summer. The highest values were observed during spring melt events when DOM was flushed from terrestrial sources by high flows. The minimum rate constants were found in summer when discharge was lowest. DOM molecular weight and specific absorbance at 254 nm also exhibited annual cycles corresponding to the seasonal cycles of terrestrial organic matter but the relationships between these properties and K was probably affected by previous exposure to solar radiation during transit from the catchment as well as pH and iron.

  13. Wastewater disinfection and organic matter removal using ferrate (VI) oxidation.

    PubMed

    Bandala, Erick R; Miranda, Jocelyn; Beltran, Margarita; Vaca, Mabel; López, Raymundo; Torres, Luis G

    2009-09-01

    The use of iron in a +6 valence state, (Fe (VI), as FeO4(-2)) was tested as a novel alternative for wastewater disinfection and decontamination. The removal of organic matter (OM) and index microorganisms present in an effluent of a wastewater plant was determined using FeO4(-2) without any pH adjustment. It was observed that concentrations of FeO4(-2) ranging between 5 and 14 mg l(-1) inactivated up to 4-log of the index microorganisms (initial concentration c.a. 10(6) CFU/100 ml) and achieved OM removal up to almost 50%. The performance of FeO4(-2) was compared with OM oxidation and disinfection using hypochlorite. It was observed that hypochlorite was less effective in OM oxidation and coliform inactivation than ferrate. Results of this work suggest that FeO4(-2) could be an interesting oxidant able to deactivate pathogenic microorganisms in water with high OM content and readily oxidize organic matter without jeopardizing its efficiency on microorganism inactivation.

  14. Black Carbon - Soil Organic Matter abiotic and biotic interactions

    NASA Astrophysics Data System (ADS)

    Cotrufo, Francesca; Boot, Claudia; Denef, Karolien; Foster, Erika; Haddix, Michelle; Jiang, Xinyu; Soong, Jennifer; Stewart, Catherine

    2014-05-01

    Wildfires, prescribed burns and the use of char as a soil amendment all add large quantities of black carbon to soils, with profound, yet poorly understood, effects on soil biology and chemical-physical structure. We will present results emerging from our black carbon program, which addresses questions concerning: 1) black carbon-soil organic matter interactions, 2) char decomposition and 3) impacts on microbial community structure and activities. Our understanding derives from a complementary set of post-fire black carbon field surveys and laboratory and field experiments with grass and wood char amendments, in which we used molecular (i.e., BPCA, PLFA) and isotopic (i.e., 13C and 15N labelled char) tracers. Overall, emerging results demonstrate that char additions to soil are prone to fast erosion, but a fraction remains that increases water retention and creates a better environment for the microbial community, particularly favoring gram negative bacteria. However, microbial decomposition of black carbon only slowly consumes a small fraction of it, thus char still significantly contributes to soil carbon sequestration. This is especially true in soils with little organic matter, where black carbon additions may even induce negative priming.

  15. Terrestrial and marine perspectives on modeling organic matter degradation pathways.

    PubMed

    Burd, Adrian B; Frey, Serita; Cabre, Anna; Ito, Takamitsu; Levine, Naomi M; Lønborg, Christian; Long, Matthew; Mauritz, Marguerite; Thomas, R Quinn; Stephens, Brandon M; Vanwalleghem, Tom; Zeng, Ning

    2016-01-01

    Organic matter (OM) plays a major role in both terrestrial and oceanic biogeochemical cycles. The amount of carbon stored in these systems is far greater than that of carbon dioxide (CO2 ) in the atmosphere, and annual fluxes of CO2 from these pools to the atmosphere exceed those from fossil fuel combustion. Understanding the processes that determine the fate of detrital material is important for predicting the effects that climate change will have on feedbacks to the global carbon cycle. However, Earth System Models (ESMs) typically utilize very simple formulations of processes affecting the mineralization and storage of detrital OM. Recent changes in our view of the nature of this material and the factors controlling its transformation have yet to find their way into models. In this review, we highlight the current understanding of the role and cycling of detrital OM in terrestrial and marine systems and examine how this pool of material is represented in ESMs. We include a discussion of the different mineralization pathways available as organic matter moves from soils, through inland waters to coastal systems and ultimately into open ocean environments. We argue that there is strong commonality between aspects of OM transformation in both terrestrial and marine systems and that our respective scientific communities would benefit from closer collaboration.

  16. Photochemical and Nonphotochemical Transformations of Cysteine with Dissolved Organic Matter.

    PubMed

    Chu, Chiheng; Erickson, Paul R; Lundeen, Rachel A; Stamatelatos, Dimitrios; Alaimo, Peter J; Latch, Douglas E; McNeill, Kristopher

    2016-06-21

    Cysteine (Cys) plays numerous key roles in the biogeochemistry of natural waters. Despite its importance, a full assessment of Cys abiotic transformation kinetics, products and pathways under environmental conditions has not been conducted. This study is a mechanistic evaluation of the photochemical and nonphotochemical (dark) transformations of Cys in solutions containing chromophoric dissolved organic matter (CDOM). The results show that Cys underwent abiotic transformations under both dark and irradiated conditions. Under dark conditions, the transformation rates of Cys were moderate and were highly pH- and temperature-dependent. Under UVA or natural sunlight irradiations, Cys transformation rates were enhanced by up to two orders of magnitude compared to rates under dark conditions. Product analysis indicated cystine and cysteine sulfinic acid were the major photooxidation products. In addition, this study provides an assessment of the contributions of singlet oxygen, hydroxyl radical, hydrogen peroxide, and triplet dissolved organic matter to the CDOM-sensitized photochemical oxidation of Cys. The results suggest that another unknown pathway was dominant in the CDOM-sensitized photodegradation of Cys, which will require further study to identify.

  17. Land Application of Wastes: An Educational Program. Organic Matter - Module 17, Objectives, and Script.

    ERIC Educational Resources Information Center

    Clarkson, W. W.; And Others

    This module sketches out the impact of sewage organic matter on soils. For convenience, that organic matter is separated into the readily decomposable compounds and the more resistant material (volatile suspended solids, refractory organics, and sludges). The fates of those organics are reviewed along with loading rates and recommended soil…

  18. Land Application of Wastes: An Educational Program. Organic Matter - Module 17, Objectives, and Script.

    ERIC Educational Resources Information Center

    Clarkson, W. W.; And Others

    This module sketches out the impact of sewage organic matter on soils. For convenience, that organic matter is separated into the readily decomposable compounds and the more resistant material (volatile suspended solids, refractory organics, and sludges). The fates of those organics are reviewed along with loading rates and recommended soil…

  19. Sulfur species behavior in soil organic matter during decomposition

    USGS Publications Warehouse

    Schroth, A.W.; Bostick, B.C.; Graham, M.; Kaste, J.M.; Mitchell, M.J.; Friedland, A.J.

    2007-01-01

    Soil organic matter (SOM) is a primary re??servoir of terrestrial sulfur (S), but its role in the global S cycle remains poorly understood. We examine S speciation by X-ray absorption near-edge structure (XANES) spectroscopy to describe S species behavior during SOM decomposition. Sulfur species in SOM were best represented by organic sulfide, sulfoxide, sulfonate, and sulfate. The highest fraction of S in litter was organic sulfide, but as decomposition progressed, relative fractions of sulfonate and sulfate generally increased. Over 6-month laboratory incubations, organic sulfide was most reactive, suggesting that a fraction of this species was associated with a highly labile pool of SOM. During humification, relative concentrations of sulfoxide consistently decreased, demonstrating the importance of sulfoxide as a reactive S phase in soil. Sulfonate fractional abundance increased during humification irrespective of litter type, illustrating its relative stability in soils. The proportion of S species did not differ systematically by litter type, but organic sulfide became less abundant in conifer SOM during decomposition, while sulfate fractional abundance increased. Conversely, deciduous SOM exhibited lesser or nonexistent shifts in organic sulfide and sulfate fractions during decomposition, possibly suggesting that S reactivity in deciduous litter is coupled to rapid C mineralization and independent of S speciation. All trends were consistent in soils across study sites. We conclude that S reactivity is related to spqciation in SOM, particularly in conifer forests, and S species fractions in SOM change, during decomposition. Our data highlight the importance of intermediate valence species (sulfoxide and sulfonate) in the pedochemical cycling of organic bound S. Copyright 2007 by the American Geophysical Union.

  20. Surficial bioturbation and rapid benthic remineralization in the Cape Hatteras shelf/slope region. Final report

    SciTech Connect

    Robert C. Aller; Josephine Y. Aller; C. Lee; J. Kirk Cochran

    1999-03-17

    This is a final report for the DOE of grant DE-FG02-92ER61464 ''Surficial bioturbation and rapid benthic remineralization in the Cape Hatteras shelf slope region''. Over the past 6 years we have participated in a multidisciplinary field study called the Ocean margins Program (OMP) to examine the importance of continental margins in the global carbon cycle. Specifically, we have focused on the southern portion of the Mid-Atlantic Bight between Cape Hatteras and Chesapeake Bay where a large flux of freshwater and organic carbon enters the North Atlantic Ocean. Additionally, during the first stage of this project, we developed the use of CM-a distributions in sediments as a quantitative indicator of benthic C flux and remineralization rates. The primary objective of our research group has been to understand mechanisms and quantify biogeochemical processes in the seabed that affect cycling, flux, and storage of carbon on the ocean margin of the Mid-Atlantic Bight.

  1. Origin of sedimentary organic matter at the Northern Cascadia Margin

    NASA Astrophysics Data System (ADS)

    Kaneko, M.; Naraoka, H.

    2007-12-01

    Gas hydrate in marine sediments may have important roles on global carbon cycle and climatic change. We examined origins of sedimentary organic matter and bacterial activity in deep and hydrate-bearing sediment cored in Site U1327 and U1328 at northern Cascadia Margin by IODP Exp311, using σ13C of total organic carbon (TOC), σ15N of total nitrogen (TN), σ34S of total sulfur (TS), and σ13C of biomarkers in hydrocarbon fraction. In both sites, TOC/TN ratios and σ13C of TOC values ranged from 5.5 to 18.0 and -25.7 to -21.5 ‰, respectively, suggesting that sedimentary organic matter is a mixture of terrestrial and marine sources. Long chain (n)-alkanes (C27, C29, and C30), known as biomarkers of terrestrial higher plant were most abundant components (up to ~50 μg/gCorg) through down to 300 mbsf, and their σ13C values (-34.3 to -28.7 ‰) reveal their C3 plant origin. In addition, very long-chain alkene (C37) occurred in some sediments, which suggests the blooming by coccolithophore in the past. σ34S of TS values at both sites show large variation between -30 to +20 ‰. Most of σ34S of TS values were less than present σ34S value of seawater sulfate (+20.3 ‰). This is attributable to isotope fractionation during microbial sulfate reduction. Crocetenes including one double bond occurred in deep sediments with higher σ13C values (-23 ‰) than the reported σ13C values (< ~ -100 ‰, Elvert et al, 2000), providing possibility of heterotrophic archaea using marine organic matter as a carbon source. Pentamethylicosane (PMI) was detected in relatively high concentrations at 249 mbsf at Site U1328 and its σ13C value was -46.4 ‰. This PMI could be chemoautotrophic archaea in origin such as methanogen. Diploptene was also detected in most sediments with the σ13C value of -37 to -35 ‰, probably being characteristic of chemoautotrophic bacteria.

  2. Potential enzyme activities in cryoturbated organic matter of arctic soils

    NASA Astrophysics Data System (ADS)

    Schnecker, J.; Wild, B.; Rusalimova, O.; Mikutta, R.; Guggenberger, G.; Richter, A.

    2012-12-01

    An estimated 581 Gt organic carbon is stored in arctic soils that are affected by cryoturbtion, more than in today's atmosphere (450 Gt). The high amount of organic carbon is, amongst other factors, due to topsoil organic matter (OM) that has been subducted by freeze-thaw processes. This cryoturbated OM is usually hundreds to thousands of years old, while the chemical composition remains largely unaltered. It has therefore been suggested, that the retarded decomposition rates cannot be explained by unfavourable abiotic conditions in deeper soil layers alone. Since decomposition of soil organic material is dependent on extracellular enzymes, we measured potential and actual extracellular enzyme activities in organic topsoil, mineral subsoil and cryoturbated material from three different tundra sites, in Zackenberg (Greenland) and Cherskii (North-East Siberia). In addition we analysed the microbial community structure by PLFAs. Hydrolytic enzyme activities, calculated on a per gram dry mass basis, were higher in organic topsoil horizons than in cryoturbated horizons, which in turn were higher than in mineral horizons. When calculated on per gram carbon basis, the activity of the carbon acquiring enzyme exoglucanase was not significantly different between cryoturbated and topsoil organic horizons in any of the three sites. Oxidative enzymes, i.e. phenoloxidase and peroxidase, responsible for degradation of complex organic substances, showed higher activities in topsoil organic and cryoturbated horizons than in mineral horizons, when calculated per gram dry mass. Specific activities (per g C) however were highest in mineral horizons. We also measured actual cellulase activities (by inhibiting microbial uptake of products and without substrate addition): calculated per g C, the activities were up to ten times as high in organic topsoil compared to cryoturbated and mineral horizons, the latter not being significantly different. The total amount of PLFAs, as a proxy for

  3. Spectroscopic characterization of dissolved organic matter isolated from rainwater.

    PubMed

    Santos, Patrícia S M; Otero, Marta; Duarte, Regina M B O; Duarte, Armando C

    2009-02-01

    Rainwater is a matrix containing extremely low concentrations (in the range of muM C) of dissolved organic carbon (DOC) and for its characterization, an efficient extraction procedure is essential. A recently developed procedure based on adsorption onto XAD-8 and XAD-4 resins in series was used in this work for the extraction and isolation of rainwater dissolved organic matter (DOM). Prior to the isolation and fractionation of DOM, and to obtain sufficient mass for the spectroscopic analyses, individual rainwater samples were batched together according to similar meteorological conditions on a total of three composed samples. The results of the isolation procedure indicated that the resin tandem procedure is not applicable for rainwater DOM since the XAD-4 resin caused samples contamination. On the other hand, the XAD-8 resin allowed DOM recoveries of 39.9-50.5% of the DOC of the original combined samples. This recovered organic fraction was characterized by UV-visible, molecular fluorescence, FTIR-ATR and 1H NMR spectroscopies. The chemical characterization of the rainwater DOM showed that the three samples consist mostly of hydroxylated and carboxylic acids with a predominantly aliphatic character, containing a minor component of aromatic structures. The obtained results suggest that the DOM in rainwater, and consequently in the precursor atmospheric particles, may have a secondary origin via the oxidation of volatile organic compounds from different origins.

  4. DETOXIFICATION OF OUTFALL WATER USING NATURAL ORGANIC MATTER

    SciTech Connect

    Halverson, N.; Looney, B.; Millings, M.; Nichols, R.; Noonkester, J.; Payne, B.

    2010-07-13

    To protect stream organisms in an ephemeral stream at the Savannah River Site, a proposed National Pollutant Discharge Elimination System (NPDES) permit reduced the copper limit from 25 {micro}g/l to 6 {micro}g/l at Outfall H-12. Efforts to reduce copper in the wastewater and stormwater draining to this outfall did not succeed in bringing copper levels below this limit. Numerous treatment methods were considered, including traditional methods such as ion exchange and natural treatment alternatives such as constructed wetlands and peat beds, all of which act to remove copper. However, the very low target metal concentration and highly variable outfall conditions presented a significant challenge for these treatment technologies. In addition, costs and energy use for most of these alternatives were high and secondary wastes would be generated. The Savannah River National Laboratory developed an entirely new 'detoxification' approach to treat the outfall water. This simple, lower-cost detoxification system amends outfall water with natural organic matter to bind up to 25 {micro}g/l copper rather than remove it, thereby mitigating its toxicity and protecting the sensitive species in the ecosystem. The amendments are OMRI (Organic Materials Review Institute) certified commercial products that are naturally rich in humic acids and are commonly used in organic farming.

  5. Iron traps terrestrially derived dissolved organic matter at redox interfaces

    PubMed Central

    Riedel, Thomas; Zak, Dominik; Biester, Harald; Dittmar, Thorsten

    2013-01-01

    Reactive iron and organic carbon are intimately associated in soils and sediments. However, to date, the organic compounds involved are uncharacterized on the molecular level. At redox interfaces in peatlands, where the biogeochemical cycles of iron and dissolved organic matter (DOM) are coupled, this issue can readily be studied. We found that precipitation of iron hydroxides at the oxic surface layer of two rewetted fens removed a large fraction of DOM via coagulation. On aeration of anoxic fen pore waters, >90% of dissolved iron and 27 ± 7% (mean ± SD) of dissolved organic carbon were rapidly (within 24 h) removed. Using ultra-high-resolution MS, we show that vascular plant-derived aromatic and pyrogenic compounds were preferentially retained, whereas the majority of carboxyl-rich aliphatic acids remained in solution. We propose that redox interfaces, which are ubiquitous in marine and terrestrial settings, are selective yet intermediate barriers that limit the flux of land-derived DOM to oceanic waters. PMID:23733946

  6. Nanoscale Structure Of Organic Matter Explain Its Recalcitrance To Degradation

    NASA Astrophysics Data System (ADS)

    Spagnol, M.; Salati, S.; Papa, G.; Tambone, F.; Adani, F.

    2009-04-01

    Recalcitrance can be defined as the natural resistance of organic matter (OM) to microbial and enzymatic deconstruction (Himmel et al., 2007). The nature of OM recalcitrance remained not completely understood and more studies need above all to elucidate the role of the chemical topography of the OM at nanometer scale. Hydrolytic enzymes responsible of OM degradation have a molecular weight of 20-25 kD, corresponding to a size of about 4 nm, hardly penetrate into micropores (i.e. the pore having a diameter < 2 nm) and small mesopores (i.e. pores having a diameter 2 < 50 nm) of OM structures, so that their activities are confined only to a portion of the total surface (Zimmerman et al., 2004; Chesson, 1997; Adani et al., 2006). As consequence of that the characterization of the organic matter at nano-scale became interesting in view to explain OM recalcitrance. The aim of this work was to asses the effect of the nano-scale structure of OM versus its recalcitrance. The evolution of organic matter of organic matrices was studied in two systems: plant residue-soil system and simulated landfill system. Plant residues were incubated in soil for one year and recalcitrant fraction, i.e. humic acid, was isolated and studied. Laboratory simulated landfill considered organic fraction of municipal solid waste sampled at different stages of evolution from a full scale plant and incubated under anaerobic condition for one year. In addition the nano-scale structure of fossilized OM (leonardite, chair coal and graphite) was detected as used as model of recalcitrant OM. Nano-scale structures were detected by using meso and microporosity detection. In particular microporosity was determined by adsorption method using CO2 at 273 K and Non Local Density Functional Theory (NLDFT) method was applied to measure the CO2 adsorption isotherms. On the other hand mesoporosity was detected by using N2 adsorption method at 77 K. The BET (Brunauer-Emmett-Teller) equation and the BJH (Barret

  7. Chromophoric Dissolved Organic Matter in Southwestern Greenland Lakes

    NASA Astrophysics Data System (ADS)

    Osburn, C. L.; Giles, M. E.; Underwood, G. J. C.

    2014-12-01

    Dissolved organic matter (DOM) is an important property of Arctic lake ecosystems, originating from allochthonous inputs from catchments and autochthonous production by plankton in the water column. Little is known about the quality of DOM in Arctic lakes that lack substantial inputs from catchments and such lakes are abundant in southwestern Greenland. Colored dissolved organic matter (CDOM), the fraction that absorbs ultraviolet (UV) and visible light, is the controlling factor for the optical properties of many surface waters and as well informs on the quality of DOM. We examined the quality of CDOM in 21 lakes in southwestern Greenland, from the ice sheet to the coast, as part of a larger study examining the role of DOM in regulating microbial communities in these lakes. DOM was size fractioned and absorbance and fluorescence was measured on each size fraction, as well as on bulk DOM. The specific ultraviolet absorbance (SUVA) at 254 nm (SUVA254), computed by normalizing absorption (a254) to dissolved organic carbon (DOC) concentration, provided an estimate of the aromatic carbon content of DOM. SUVA values were generally <2, indicating low aromatic content. Parallel factor analysis (PARAFAC) of CDOM fluorescence was used to determine the relative abundance of allochthonous and autochthonous DOM in all size fractions. Younger lakes near the ice sheet and lakes near the coast had lower amounts of CDOM and appeared more microbial in quality. However, lakes centrally located between the ice sheet and the coast had the highest CDOM concentrations and exhibited strong humic fluorescence. Overall distinct differences in CDOM quality were observed between lake locations and among DOM size fractions.

  8. Photochemical Reactivity of Dissolved Organic Matter in Boreal Lakes

    NASA Astrophysics Data System (ADS)

    Gu, Y.; Vuorio, K.; Tiirola, M.; Perämäki, S.; Vahatalo, A.

    2016-12-01

    Boreal lakes are rich in dissolved organic matter (DOM) that terrestrially derived from forest soil and wetland, yet little is known about potential for photochemical transformation of aquatic DOM in boreal lakes. Transformation of chromophoric dissolved organic matter (CDOM) can decrease water color and enhance microbial mineralization, affecting primary production and respiration, which both affect the CO2 balance of the lakes. We used laboratory solar radiation exposure experiments with lake water samples collected from 54 lakes located in Finland and Sweden, representing different catchment composition and watershed location to assess photochemical reactivity of DOM. The pH of water samples ranged from 5.4 to 8.3, and the concentrations of dissolved iron (Fe) were between < 0.06 and 22 μmol L-1. The filtered water samples received simulated solar radiation corresponding to a daily dose of sunlight, and photomineralization of dissolved organic carbon (DOC) to dissolved inorganic carbon (DIC) was measured for determination of spectral apparent quantum yields (AQY). During irradiation, photobleaching decreased the absorption coefficients of CDOM at 330 nm between 4.9 and 79 m-1 by 0.5 to 11 m-1. Irradiation generated DIC from 2.8 to 79 μmol C L-1. The AQY at 330 nm ranged between 31 and 273 ×10-6 mol C mol photons-1 h-1, which was correlated positively with concentration of dissolved Fe, and negatively with pH. Further statistical analyze indicated that the interaction between pH and Fe may explain much of the photochemical reactivity of DOM in the examined lakes, and land cover concerns main catchment areas also can have impact on the photoreaction process. This study may suggest how environmental conditions regulate DOM photomineralization in boreal lakes.

  9. Organic matter loss from cultivated peat soils in Sweden

    NASA Astrophysics Data System (ADS)

    Berglund, Örjan; Berglund, Kerstin

    2015-04-01

    The degradation of drained peat soils in agricultural use is an underestimated source of loss of organic matter. Oxidation (biological degradation) of agricultural peat soils causes a loss of organic matter (OM) of 11 - 22 t ha-1 y-1 causing a CO2 emission of 20 - 40 t ha-1 y-1. Together with the associated N2O emissions from mineralized N this totals in the EU to about 98.5 Mton CO2 eq per year. Peat soils are very prone to climate change and it is expected that at the end of this century these values are doubled. The degradation products pollute surface waters. Wind erosion of peat soils in arable agriculture can cause losses of 3 - 30 t ha-1 y-1 peat also causing air pollution (fine organic particles). Subsidence rates are 1 - 2 cm per year which leads to deteriorating drainage effect and make peat soils below sea or inland water levels prone to flooding. Flooding agricultural peat soils is in many cases not possible without high costs, high GHG emissions and severe water pollution. Moreover sometimes cultural and historic landscapes are lost and meadow birds areas are lost. In areas where the possibility to regulate the water table is limited the mitigation options are either to increase biomass production that can be used as bioenergy to substitute some fossil fuel, try to slow down the break-down of the peat by different amendments that inhibit microbial activity, or permanent flooding. The negative effects of wind erosion can be mitigated by reducing wind speed or different ways to protect the soil by crops or fiber sheets. In a newly started project in Sweden a typical peat soil with and without amendment of foundry sand is cropped with reed canary grass, tall fescue and timothy to investigate the yield and greenhouse gas emissions from the different crops and how the sand effect the trafficability and GHG emissions.

  10. Measuring Organic Matter with COSIMA on Board Rosetta

    NASA Astrophysics Data System (ADS)

    Briois, C.; Baklouti, D.; Bardyn, A.; Cottin, H.; Engrand, C.; Fischer, H.; Fray, N.; Godard, M.; Hilchenbach, M.; von Hoerner, H.; Höfner, H.; Hornung, K.; Kissel, J.; Langevin, Y.; Le Roy, L.; Lehto, H.; Lehto, K.; Orthous-Daunay, F. R.; Revillet, C.; Rynö, J.; Schulz, R.; Silen, J. V.; Siljeström, S.; Thirkell, L.

    2014-12-01

    Comets are believed to contain the most pristine material of our Solar System materials and therefore to be a key to understand the origin of the Solar System, and the origin of life. Remote sensing observations have led to the detection of more than twenty simple organic molecules (Bockelée-Morvan et al., 2004; Mumma and Charnley, 2011). Experiments on-board in-situ exploration missions Giotto and Vega and the recent Stardust sample return missions have shown that a significant fraction of the cometary grains consists of organic matter. Spectra showed that both the gaseous (Mitchell et al., 1992) and the solid phase (grains) (Kissel and Krueger, 1987) contained organic molecules with higher masses than those of the molecules detected by remote sensing techniques in the gaseous phase. Some of the grains analyzed in the atmosphere of comet 1P/Halley seem to be essentially made of a mixture of carbon, hydrogen, oxygen and nitrogen (CHON grains, Fomenkova, 1999). Rosetta is an unparalleled opportunity to make a real breakthrough into the nature of cometary matter, both in the gas and in the solid phase. The dust mass spectrometer COSIMA on Rosetta will analyze organic and inorganic phases in the dust. The organic phases may be refractory, but some organics may evaporate with time from the dust and lead to an extended source in the coma. Over the last years, we have prepared the cometary rendezvous by the analysis of various samples with the reference model of COSIMA. We will report on this calibration data set and on the first results of the in-situ analysis of cometary grains as captured, imaged and analyzed by COSIMA. References : Bockelée-Morvan, D., et al. 2004. (Eds.), Comets II. the University of Arizona Press, Tucson, USA, pp. 391-423 ; Fomenkova, M.N., 1999. Space Science Reviews 90, 109-114 ; Kissel, J., Krueger, F.R., 1987. Nature 326, 755-760 ; Mitchell, et al. 1992. Icarus 98, 125-133 ; Mumma, M.J., Charnley, S.B., 2011. Annual Review of Astronomy and

  11. SNC Meteorites, Organic Matter and a New Look at Viking

    NASA Technical Reports Server (NTRS)

    Warmflash, David M.; Clemett, Simon J.; McKay, David S.

    2001-01-01

    Recently, evidence has begun to grow supporting the possibility that the Viking GC-MS would not have detected certain carboxylate salts that could have been present as metastable oxidation products of high molecular weight organic species. Additionally, despite the instrument's high sensitivity, the possibility had remained that very low levels of organic matter, below the instrument's detection limit, could have been present. In fact, a recent study indicates that the degradation products of several million microorganisms per gram of soil on Mars would not have been detected by the Viking GC-MS. Since the strength of the GC-MS findings was considered enough to dismiss the biology packet, particularly the LR results, any subsequent evidence suggesting that organic molecules may in fact be present on the Martian surface necessitates a re-evaluation of the Viking LR data. In addition to an advanced mass spectrometer to look for isotopic signatures of biogenic processes, future lander missions will include the ability to detect methane produced by methanogenic bacteria, as well as techniques based on biotechnology. Meanwhile, the identification of Mars samples already present on Earth in the form of the SNC meteorites has provided us with the ability to study samples of the Martian upper crust a decade or more in advance of any planned sample return missions. While contamination issues are of serious concern, the presence of indigenous organic matter in the form of polycyclic aromatic hydrocarbons has been detected in the Martian meteorites ALH84001 and Nakhla, while there is circumstantial evidence for carbonaceous material in Chassigny. The radiochronological ages of these meteorites are 4.5 Ga, 1.3 Ga, and 165 Ma respectively representing a span of time in Earth history from the earliest single-celled organisms to the present day. Given this perspective on organic material, a biological interpretation to the Viking LR results can no longer be ruled out. In the LR

  12. SNC Meteorites, Organic Matter and a New Look at Viking

    NASA Technical Reports Server (NTRS)

    Warmflash, David M.; Clemett, Simon J.; McKay, David S.

    2001-01-01

    Recently, evidence has begun to grow supporting the possibility that the Viking GC-MS would not have detected certain carboxylate salts that could have been present as metastable oxidation products of high molecular weight organic species. Additionally, despite the instrument's high sensitivity, the possibility had remained that very low levels of organic matter, below the instrument's detection limit, could have been present. In fact, a recent study indicates that the degradation products of several million microorganisms per gram of soil on Mars would not have been detected by the Viking GC-MS. Since the strength of the GC-MS findings was considered enough to dismiss the biology packet, particularly the LR results, any subsequent evidence suggesting that organic molecules may in fact be present on the Martian surface necessitates a re-evaluation of the Viking LR data. In addition to an advanced mass spectrometer to look for isotopic signatures of biogenic processes, future lander missions will include the ability to detect methane produced by methanogenic bacteria, as well as techniques based on biotechnology. Meanwhile, the identification of Mars samples already present on Earth in the form of the SNC meteorites has provided us with the ability to study samples of the Martian upper crust a decade or more in advance of any planned sample return missions. While contamination issues are of serious concern, the presence of indigenous organic matter in the form of polycyclic aromatic hydrocarbons has been detected in the Martian meteorites ALH84001 and Nakhla, while there is circumstantial evidence for carbonaceous material in Chassigny. The radiochronological ages of these meteorites are 4.5 Ga, 1.3 Ga, and 165 Ma respectively representing a span of time in Earth history from the earliest single-celled organisms to the present day. Given this perspective on organic material, a biological interpretation to the Viking LR results can no longer be ruled out. In the LR

  13. Quality of fresh organic matter affects priming of soil organic matter and substrate utilization patterns of microbes

    NASA Astrophysics Data System (ADS)

    Wang, Hui; Boutton, Thomas W.; Xu, Wenhua; Hu, Guoqing; Jiang, Ping; Bai, Edith

    2015-05-01

    Changes in biogeochemical cycles and the climate system due to human activities are expected to change the quantity and quality of plant litter inputs to soils. How changing quality of fresh organic matter (FOM) might influence the priming effect (PE) on soil organic matter (SOM) mineralization is still under debate. Here we determined the PE induced by two 13C-labeled FOMs with contrasting nutritional quality (leaf vs. stalk of Zea mays L.). Soils from two different forest types yielded consistent results: soils amended with leaf tissue switched faster from negative PE to positive PE due to greater microbial growth compared to soils amended with stalks. However, after 16 d of incubation, soils amended with stalks had a higher PE than those amended with leaf. Phospholipid fatty acid (PLFA) results suggested that microbial demand for carbon and other nutrients was one of the major determinants of the PE observed. Therefore, consideration of both microbial demands for nutrients and FOM supply simultaneously is essential to understand the underlying mechanisms of PE. Our study provided evidence that changes in FOM quality could affect microbial utilization of substrate and PE on SOM mineralization, which may exacerbate global warming problems under future climate change.

  14. Quality of fresh organic matter affects priming of soil organic matter and substrate utilization patterns of microbes.

    PubMed

    Wang, Hui; Boutton, Thomas W; Xu, Wenhua; Hu, Guoqing; Jiang, Ping; Bai, Edith

    2015-05-11

    Changes in biogeochemical cycles and the climate system due to human activities are expected to change the quantity and quality of plant litter inputs to soils. How changing quality of fresh organic matter (FOM) might influence the priming effect (PE) on soil organic matter (SOM) mineralization is still under debate. Here we determined the PE induced by two (13)C-labeled FOMs with contrasting nutritional quality (leaf vs. stalk of Zea mays L.). Soils from two different forest types yielded consistent results: soils amended with leaf tissue switched faster from negative PE to positive PE due to greater microbial growth compared to soils amended with stalks. However, after 16 d of incubation, soils amended with stalks had a higher PE than those amended with leaf. Phospholipid fatty acid (PLFA) results suggested that microbial demand for carbon and other nutrients was one of the major determinants of the PE observed. Therefore, consideration of both microbial demands for nutrients and FOM supply simultaneously is essential to understand the underlying mechanisms of PE. Our study provided evidence that changes in FOM quality could affect microbial utilization of substrate and PE on SOM mineralization, which may exacerbate global warming problems under future climate change.

  15. Quality of fresh organic matter affects priming of soil organic matter and substrate utilization patterns of microbes

    PubMed Central

    Wang, Hui; Boutton, Thomas W.; Xu, Wenhua; Hu, Guoqing; Jiang, Ping; Bai, Edith

    2015-01-01

    Changes in biogeochemical cycles and the climate system due to human activities are expected to change the quantity and quality of plant litter inputs to soils. How changing quality of fresh organic matter (FOM) might influence the priming effect (PE) on soil organic matter (SOM) mineralization is still under debate. Here we determined the PE induced by two 13C-labeled FOMs with contrasting nutritional quality (leaf vs. stalk of Zea mays L.). Soils from two different forest types yielded consistent results: soils amended with leaf tissue switched faster from negative PE to positive PE due to greater microbial growth compared to soils amended with stalks. However, after 16 d of incubation, soils amended with stalks had a higher PE than those amended with leaf. Phospholipid fatty acid (PLFA) results suggested that microbial demand for carbon and other nutrients was one of the major determinants of the PE observed. Therefore, consideration of both microbial demands for nutrients and FOM supply simultaneously is essential to understand the underlying mechanisms of PE. Our study provided evidence that changes in FOM quality could affect microbial utilization of substrate and PE on SOM mineralization, which may exacerbate global warming problems under future climate change. PMID:25960162

  16. Significance of Isotopically Labile Organic Hydrogen in Thermal Maturation of Organic Matter

    SciTech Connect

    Arndt Schimmelmann; Maria Mastalerz

    2010-03-30

    Isotopically labile organic hydrogen in fossil fuels occupies chemical positions that participate in isotopic exchange and in chemical reactions during thermal maturation from kerogen to bitumen, oil and gas. Carbon-bound organic hydrogen is isotopically far less exchangeable than hydrogen bound to nitrogen, oxygen, or sulfur. We explore why organic hydrogen isotope ratios express a relationship with organic nitrogen isotope ratios in kerogen at low to moderate maturity. We develop and apply new techniques to utilize organic D/H ratios in organic matter fractions and on a molecular level as tools for exploration for fossil fuels and for paleoenvironmental research. The scope of our samples includes naturally and artificially matured substrates, such as coal, shale, oil and gas.

  17. Storage and turnover of organic matter in soil

    SciTech Connect

    Torn, M.S.; Swanston, C.W.; Castanha, C.; Trumbore, S.E.

    2008-07-15

    Historically, attention on soil organic matter (SOM) has focused on the central role that it plays in ecosystem fertility and soil properties, but in the past two decades the role of soil organic carbon in moderating atmospheric CO{sub 2} concentrations has emerged as a critical research area. This chapter will focus on the storage and turnover of natural organic matter in soil (SOM), in the context of the global carbon cycle. Organic matter in soils is the largest carbon reservoir in rapid exchange with atmospheric CO{sub 2}, and is thus important as a potential source and sink of greenhouse gases over time scales of human concern (Fischlin and Gyalistras 1997). SOM is also an important human resource under active management in agricultural and range lands worldwide. Questions driving present research on the soil C cycle include: Are soils now acting as a net source or sink of carbon to the atmosphere? What role will soils play as a natural modulator or amplifier of climatic warming? How is C stabilized and sequestered, and what are effective management techniques to foster these processes? Answering these questions will require a mechanistic understanding of how and where C is stored in soils. The quantity and composition of organic matter in soil reflect the long-term balance between plant carbon inputs and microbial decomposition, as well as other loss processes such as fire, erosion, and leaching. The processes driving soil carbon storage and turnover are complex and involve influences at molecular to global scales. Moreover, the relative importance of these processes varies according to the temporal and spatial scales being considered; a process that is important at the regional scale may not be critical at the pedon scale. At the regional scale, SOM cycling is influenced by factors such as climate and parent material, which affect plant productivity and soil development. More locally, factors such as plant tissue quality and soil mineralogy affect

  18. Influence of land use on soil organic matter

    NASA Astrophysics Data System (ADS)

    Rogeon, H.; Lemée, L.; Chabbi, A.; Ambles, A.

    2009-04-01

    Soil organic matter (SOM) is actually of great environmental interest as the amount of organic matter stored in soils represents one of the largest reservoirs of organic carbon on the global scale [1]. Indeed, soil carbon storage capacity represents 1500 to 2000 Gt for the first meter depth, which is twice the concentration of atmospheric CO2 [2]. Furthermore, human activities, such as deforestation (which represents a flux of 1.3 Gt C/year), contribute to the increase in atmospheric CO2 concentration for about one percent a year [3]. Therefore, carbon dioxide sequestration in plant and carbon storage in soil and biomass could be considered as a complementary solution against climate change. The stock of carbon in soils is greatly influenced by land use (ca 70 Gt for a forest soil or a grassland against 40 Gt for an arable land). Furthermore the molecular composition of SOM should be also influenced by vegetation. In this context, four horizons taken between 0-120 cm from the same profile of a soil under grassland and forest located in the vicinity of Poitiers (INRA Lusignan, ORE Prairie) were compared. For the surface horizon, the study is improved with the results from the cultivated soil from INRA Versailles. Soil organic matter was characterized using IR spectroscopy, elemental analysis and thermal analysis. Granulometric fractionation into sand (50-2000 μm), silt (2-50 μm) and clay (<2 μm) was conducted. The organic matter associated with the mineral fractions was thus characterized using thermochemolysis coupled with gas chromatography and mass spectrometry (Py-GC/MS). The total lipidic fractions were extracted with CH2Cl2/MeOH using an accelerated solvent extraction (ASE). In the three soils, lipids are concentrated into the superficial horizon (0-30 cm) which indicates a low mobilisation. Lipids from the superficial horizon are more abundant for the arable soil (1010 ppm) than for the two other (400 ppm). Lipids from the forest and the grassland were

  19. Root Mediation of Soil Organic Matter Feedbacks to Climate Change

    NASA Astrophysics Data System (ADS)

    Pendall, E.; Carrillo, Y.; Nie, M.; Osanai, Y.; Nelson, L. C.; Sanderman, J.; Baldock, J.; Hovenden, M.

    2014-12-01

    The importance of plant roots in carbon cycling and especially soil organic matter (SOM) formation and decomposition has been recently recognized. Up to eighty percent of net primary production may be allocated to roots in ecosystems such as grasslands, where they contribute substantially to SOM formation. On the other hand, root induced priming of SOM decomposition has been implicated in the loss of soil C stocks. Thus, the accurate prediction of climate change impacts on C sequestration in soils largely depends upon improved understanding of root-mediated SOM formation and loss in the rhizosphere. This presentation represents an initial attempt to synthesize belowground observations from free-air CO2 enrichment and warming experiments in two grassland ecosystems. We found that the chemical composition of root carbon is similar to particulate organic matter (POM), but not to mineral associated organic matter (MOM), suggesting less microbial modification during formation of POM than MOM. While root biomass and production rates increased under elevated CO2, POM and MOM fractions did not increase proportionally. We also observed increased root decomposition with elevated CO2, which was likely due to increased soil water and substrate availability, since root C quality (determined by NMR) and decomposition (in laboratory incubations) were unaltered. Further, C quality and decomposition rates of roots differed between C3 and C4 functional types. Changes in root morphology with elevated CO2 have altered root functioning. Increased root surface area and length per unit mass allow increased exploration for nutrients, and potentially enhanced root exudation, rhizodeposition, and priming of SOM decomposition. Controlled chamber experiments demonstrated that uptake of N from SOM was linearly correlated with specific root length. Taken together, these results indicate that root morphology, chemistry and function all play roles in affecting soil C storage and loss, and that

  20. Size fractionated characterization of freshwater organic matter fluorescence

    NASA Astrophysics Data System (ADS)

    Baker, A.; Lead, J.; Elliott, S.; Demomi, A.; Liu, R.; Seredynska-Sobecka, B.; Hudson, N. J.

    2006-12-01

    We employ a range of optical (fluorescence, absorbance) techniques to freshwater organic matter, focusing on samples from urban catchments and using both traditional (filtration, cross flow ultrafiltration) and novel (split cell thin flow (SPLITT)) fractionation techniques to investigate the fluorescence characteristics of both dissolved and colloidal organic matter and to probe different fractions of the size range. We find: (1) As with previous studies, urban freshwaters have high tryptophan-like fluorescence in comparison to humic-like fluorescence. (2) After conventional filtration, our samples demonstrate that humic-like fluorescence is predominantly within the <25 nm fraction and pH dependent, suggesting that it is predominantly `dissolved'. Tryptophan-like fluorescence is associated with either dissolved, colloidal and particulate fractions, and is less pH dependent, depending on the sample, suggesting a variety of sources that are known to include microbial and biological cells and their exudates and the products of decomposition and feeding. (3) When the thermal quenching of fluorescence is investigated at different filter fractions, humic-like fluorescence quenching does not vary with filter fraction, whereas tryptophan-like fluorescence quenching exhibits a size dependency. This confirms at least two sources of tryptophan-like fluorescence that have different sizes and different thermal quenching properties. (4) SPLITT also shows that tryptophan-like fluorescence intensity is found mainly in the particulate material and is not pH dependent, while humic-like fluorescence intensities are dependent on pH but not on size. However, humic-like fluorescence intensity normalised to absorbance, related to fluorescence efficiency and molar mass, varies with size in the SPLITT samples. (5) Cross flow ultrafiltration confirms that, compared with tryptophan standards, freshwater tryptophan-like fluorescence is not dissolved and `free'. However, it is related to the

  1. cyclostratigraphy, sequence stratigraphy and organic matter accumulation mechanism

    NASA Astrophysics Data System (ADS)

    Cong, F.; Li, J.

    2016-12-01

    The first member of Maokou Formation of Sichuan basin is composed of well preserved carbonate ramp couplets of limestone and marlstone/shale. It acts as one of the potential shale gas source rock, and is suitable for time-series analysis. We conducted time-series analysis to identify high-frequency sequences, reconstruct high-resolution sedimentation rate, estimate detailed primary productivity for the first time in the study intervals and discuss organic matter accumulation mechanism of source rock under sequence stratigraphic framework.Using the theory of cyclostratigraphy and sequence stratigraphy, the high-frequency sequences of one outcrop profile and one drilling well are identified. Two third-order sequences and eight fourth-order sequences are distinguished on outcrop profile based on the cycle stacking patterns. For drilling well, sequence boundary and four system tracts is distinguished by "integrated prediction error filter analysis" (INPEFA) of Gamma-ray logging data, and eight fourth-order sequences is identified by 405ka long eccentricity curve in depth domain which is quantified and filtered by integrated analysis of MTM spectral analysis, evolutive harmonic analysis (EHA), evolutive average spectral misfit (eASM) and band-pass filtering. It suggests that high-frequency sequences correlate well with Milankovitch orbital signals recorded in sediments, and it is applicable to use cyclostratigraphy theory in dividing high-frequency(4-6 orders) sequence stratigraphy.High-resolution sedimentation rate is reconstructed through the study interval by tracking the highly statistically significant short eccentricity component (123ka) revealed by EHA. Based on sedimentation rate, measured TOC and density data, the burial flux, delivery flux and primary productivity of organic carbon was estimated. By integrating redox proxies, we can discuss the controls on organic matter accumulation by primary production and preservation under the high-resolution sequence

  2. The impact of meter-scale oxygen gradients in the selective degradation of organic matter: implications for proxy interpretation

    NASA Astrophysics Data System (ADS)

    Bogus, K.; Zonneveld, K. A.; Fischer, D.; Kasten, S.; Versteegh, G.

    2010-12-01

    The reconstruction of upper oceanographic conditions is often founded on organic matter-based proxies that have their origin within the photic zone and measurably reflect these conditions. It is well known that only a fraction of the organic matter that is produced in the upper water column reaches the sea floor where it is further degraded by aerobic and anaerobic remineralization processes. During the last decades it has become clear that preservation is highly selective and can, depending on the proxy used, severely influence the proxy outcome. One of the main factors that can influence the preservation of organic matter is the presence of oxygen. Therefore, for an adequate interpretation of proxy signals, it is essential to obtain insight as to how the extent of oxygen availability might alter the proxy outcome. Until now, the majority of studies investigating the impact of selective aerobic degradation on organic matter-based proxies have suffered from a priori environmental spatial heterogeneity. In other words, a large distance between sample locations introduces a source of error in that additional factors, such as lateral transport and differing photic zone conditions, cannot be completely discounted as contributing reasons for a change in proxy ratios during interpretation. This degree of uncertainty makes it difficult to separate initial environmentally-induced heterogeneity, such as varying temperatures and nutrient levels, from those induced by selective aerobic degradation. In order to constrain these problems and evaluate the extent of early selective aerobic degradation on proxies in surface sediments, we restricted sampling distance to meter-scale oxygen gradients existing on the margins of cold seeps in the northeastern Arabian Sea. These samples were retrieved along a gradient from the methane pocket to the outer rim of the methane-influenced area by computer-steered push coring using the ROV Quest during RV Meteor cruise M74/3 in November 2007

  3. Organic Matter in Extraterrestrial Water-Bearing Salt Crystals

    NASA Technical Reports Server (NTRS)

    Chan, Q. H. S.; Zolensky, M. E.; Kebukwa, Y.; Fries, M.; Steele, A.

    2017-01-01

    Introduction: Direct samples of early Solar System fluids are present in two thermally-metamorphosed ordinary chondrite regolith breccias (Monahans (1998) [H5] and Zag [H3-6]), which were found to contain brine-bearing halite (NaCl) crystals that have been added to the regolith of an S-type asteroid following asteroidal metamorphism [1, 2]. The brine-bearing halite grains were proposed to be formed on an icy C-type asteroids (possibly Ceres), and transferred to an S-type asteroid via cryovolcanic event(s) [3]. A unique aspect of these halites is that they contain abundant organic rich solid inclusions hosted within the halites alongside the water inclusions. Methods: We analyzed in detail the compositions of the organic solids and the amino acid content of the halite crystals with two-step laser desorption/laser ionization mass spectrometry (L(sup 2) MS), Raman spectroscopy, X-ray absorption near edge structure (XANES), nanoscale secondary ion mass spectrometry (NanoSIMS), and ultra-performance liquid chromatography fluorescence detection and quadrupole time of flight hybrid mass spectrometry (UPLC-FD/QToF-MS). Results and Discussion: The L(sup 2) MS results show signatures of low-mass polyaromatic hydro-carbons (PAHs) indicated by sequences of peaks separated by 14 atomic mass units (amu) due to successive addition of methylene (CH2) groups to the PAH skeletons [4]. Raman spectra of the micron-sized solid inclusions of the halites indicate the presence of abundant and highly variable organic matter that include a mixture of short-chain aliphatic compounds and macromolecular carbon. C-XANES analysis identified C-rich areas with peaks at 285.0 eV (aromatic C=C) and 286.6 eV (vinyl-keto C=O). However, there is no 1s-sigma* exciton peak (291.7 eV) that is indicative of the development of graphene structure [5], which suggests the organics were synthesized cold. Na-noSIMS analyses show C-rich and N-rich areas that exhibit similar isotopic values with that of the IOM in

  4. Understanding soil organic matter dynamics to ecologically increase crop yields

    NASA Astrophysics Data System (ADS)

    Koorneef, Guusje; Zandbergen, Jelmer; Pulleman, Mirjam; Comans, Rob

    2017-04-01

    There is an increasing societal interest to develop farming systems that produce high yields while maintaining or even improving ecosystem functioning. Organic farming is such an ecological-intensive system with generally lower yields but better ecosystem functioning than conventional farming systems. In this project we therefore study how we can accelerate the development of soils in organically managed farming systems to improve yield. We specifically aim to unravel how the quality and quantity of Soil Organic Matter (SOM) drives crop yields. We hypothesize that a higher quality and quantity of different SOM pools leads to enhanced ecosystem functioning (e.g. nutrient availability, water provisioning) through mutual links between soil biota with their physico-chemical environment. To test our hypothesis we will link spatio-temporal variation in crop quality (e.g. leaf-N content) and quantity to variation in biotic and abiotic soil properties in an on-going long-term experiment at the Vredepeel, the Netherlands. We will specifically focus on the possible mechanisms via which SOM dynamics can improve soil functions to achieve high crop yields. We will identify the different SOM pools (e.g. SOM in macro- and microaggregates) and SOM dynamics and link that to soil functioning (e.g. nutrient cycling) and crop yield. Understanding the underlying mechanisms via which SOM influences soil functioning and crop yield will provide tools to accelerate the transition towards a sustainable intensification of farming systems.

  5. Sources, Ages, and Alteration of Organic Matter in Estuaries

    NASA Astrophysics Data System (ADS)

    Canuel, Elizabeth A.; Hardison, Amber K.

    2016-01-01

    Understanding the processes influencing the sources and fate of organic matter (OM) in estuaries is important for quantifying the contributions of carbon from land and rivers to the global carbon budget of the coastal ocean. Estuaries are sites of high OM production and processing, and understanding biogeochemical processes within these regions is key to quantifying organic carbon (Corg) budgets at the land-ocean margin. These regions provide vital ecological services, including nutrient filtration and protection from floods and storm surge, and provide habitat and nursery areas for numerous commercially important species. Human activities have modified estuarine systems over time, resulting in changes in the production, respiration, burial, and export of Corg. Corg in estuaries is derived from aquatic, terrigenous, and anthropogenic sources, with each source exhibiting a spectrum of ages and lability. The complex source and age characteristics of Corg in estuaries complicate our ability to trace OM along the river-estuary-coastal ocean continuum. This review focuses on the application of organic biomarkers and compound-specific isotope analyses to estuarine environments and on how these tools have enhanced our ability to discern natural sources of OM, trace their incorporation into food webs, and enhance understanding of the fate of Corg within estuaries and their adjacent waters.

  6. Sources, Ages, and Alteration of Organic Matter in Estuaries.

    PubMed

    Canuel, Elizabeth A; Hardison, Amber K

    2016-01-01

    Understanding the processes influencing the sources and fate of organic matter (OM) in estuaries is important for quantifying the contributions of carbon from land and rivers to the global carbon budget of the coastal ocean. Estuaries are sites of high OM production and processing, and understanding biogeochemical processes within these regions is key to quantifying organic carbon (Corg) budgets at the land-ocean margin. These regions provide vital ecological services, including nutrient filtration and protection from floods and storm surge, and provide habitat and nursery areas for numerous commercially important species. Human activities have modified estuarine systems over time, resulting in changes in the production, respiration, burial, and export of Corg. Corg in estuaries is derived from aquatic, terrigenous, and anthropogenic sources, with each source exhibiting a spectrum of ages and lability. The complex source and age characteristics of Corg in estuaries complicate our ability to trace OM along the river-estuary-coastal ocean continuum. This review focuses on the application of organic biomarkers and compound-specific isotope analyses to estuarine environments and on how these tools have enhanced our ability to discern natural sources of OM, trace their incorporation into food webs, and enhance understanding of the fate of Corg within estuaries and their adjacent waters.

  7. [Effect to demineralization and remineralization of enamel surface by fluorine].

    PubMed

    Wu, Na; Zhou, Xuedong; Hao, Yuqing

    2012-10-01

    To analyze the mechanism of fluorine by systemic analysis of fluorination-demineralization-remineralization experiments. The enamel specimens were randomly assigned to untreated group (group A), non-fluoride group (group B), low-fluoride group (group C) and high-fluoride group (group D). The in vitro model of fluoride enamel was established in group C and D. Based on that, the establishment of demineralization model and remineralization experiment by pH-cycling in group B, C and D were followed. All enamel specimens were observed by stereomicroscope and scanning electron microscope and compared in surface microhardness value. There was distinct difference in micro-morphologic appearance on fluoride enamel surface. Artificial caries of fluoride enamel showed a relatively complete surface, the surface microhardness after demineralization and remineralization in fluoride group was higher than non-fluoride group (P < 0.05). The fluorinated enamel can enhance cariostatic potential and remineralization capacity of dental enamel.

  8. Acid-base properties of Baltic Sea dissolved organic matter

    NASA Astrophysics Data System (ADS)

    Hammer, Karoline; Schneider, Bernd; Kuliński, Karol; Schulz-Bull, Detlef E.

    2017-09-01

    Calculations related to the marine CO2 system that are based on alkalinity data may be strongly biased if the contributions of organic compounds are ignored. In coastal seas, concentrations of dissolved organic matter (DOM) are frequently high and alkalinity from inorganic compounds is low. In this study, based on measurements of total alkalinity, total CO2, and pH, we determined the organic alkalinity, Aorg, in water from the central Baltic Sea. The maximum Aorg measured in the surface mixed layer during the spring bloom was > 50 μmol/kg-SW but the Aorg decreased with depth and approached zero below the permanent halocline. This behavior could be attributed to the decreased pH of deeper water layers. The data were used to calculate the bulk dissociation constant, KDOM, for marine DOM and the fraction f of dissolved organic carbon (DOC) that acts as a carrier for acid-base functional groups. The p KDOM (7.27) agreed well with the value (7.34) previously estimated in a preliminary study of organic alkalinity in the Baltic Sea. The fraction of carbon atoms carrying acid-base groups was 17% and was somewhat higher than previously reported (12%). Spike experiments performed using artificial seawater and three different humic/fulvic substances tested whether the acid-base properties of these substances explain the results of our field study. Specifically, Aorg was determined at different concentrations (DOC) of the added humic/fulvic substances. The relationship between Aorg and the DOC concentrations indicated that humic/fulvic substances are more acidic (p KDOM < 6.5) than the bulk DOC natural occurring in the Baltic Sea.

  9. Abiotic Addition of Sulfide to Dissolved Organic Matter

    NASA Astrophysics Data System (ADS)

    Poulin, B. A.; Ryan, J. N.; Nagy, K.; Stubbins, A.; Dittmar, T.; Aiken, G.

    2016-02-01

    Sulfur-containing functional groups in dissolved organic matter (DOM) play important roles in controlling the chemical speciation and geochemistry of trace metals in surface waters, wetland soils, and pore waters. The abiotic addition of sulfide to DOM is recognized as an important mechanism responsible for the elevated concentration of sulfur and high relative abundance of reduced sulfur groups in DOM. Despite these observations, there is little experimental information on the organic molecules that sulfur incorporates into and the speciation of the incorporated sulfur. We present results from laboratory and field efforts that characterize changes in organic sulfur chemistry under sulfidic conditions. In the laboratory, Suwannee River hydrophobic organic acid (HPOA) was reacted with sulfide at an environmentally relevant sulfide-to-DOM concentration ratio (0.06 mol S2-(mol C)-1). Elemental composition and sulfur K-edge X-ray absorption near-edge structure (XANES) spectra of Suwannee River samples show a 55% molar increase in reduced sulfur accompanied by a shift in reduced sulfur speciation from primarily heterocyclic (75% of reduced S) to predominantly exocyclic (90% of reduced S) following sulfide exposure. An analysis of samples by Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) reveals an increase in molecular formula assignments with sulfur heteroatoms (e.g., CHOS, CHONS) likely due to reactions with sulfide. For the field component, the HPOA fraction of DOM was isolated from surface and pore water samples collected from four locations across a sulfate gradient in the Florida Everglades. Elemental composition and FTICR-MS spectra of DOM samples show that the (1) organic sulfur content and (2) percentage of molecular formula assignments containing sulfur heteroatoms correspond with the aqueous sulfide concentration. The results provide insight into the alteration of DOM in sulfidic environments and its implications for sulfur cycling.

  10. Grown organic matter as a fuel raw material resource

    NASA Technical Reports Server (NTRS)

    Roller, W. L.; Keener, H. M.; Kline, R. D.; Mederski, H. J.; Curry, R. B.

    1975-01-01

    An extensive search was made on biomass production from the standpoint of climatic zones, water, nutrients, costs and energy requirements for many species. No exotic species were uncovered that gave hope for a bonanza of biomass production under culture, location, and management markedly different from those of existing agricultural concepts. A simulation analysis of biomass production was carried out for six species using conventional production methods, including their production costs and energy requirements. These estimates were compared with data on food, fiber, and feed production. The alternative possibility of using residues from food, feed, or lumber was evaluated. It was concluded that great doubt must be cast on the feasibility of producing grown organic matter for fuel, in competition with food, feed, or fiber. The feasibility of collecting residues may be nearer, but the competition for the residues for return to the soil or cellulosic production is formidable.

  11. [Dissolved organic matter (DOM) dynamics in karst aquifer systems].

    PubMed

    Yao, Xin; Zou, Sheng-Zhang; Xia, Ri-Yuan; Xu, Dan-Dan; Yao, Min

    2014-05-01

    Dissolved organic matter (DOM) and nutrients have a unique way of producing, decomposing and storing in southwest karst water systems. To understand the biogeochemical cycle of DOM in karst aquifer systems, we investigated the behavioral changes of DOM fluorescence components in Zhaidi karst river system. Two humic-like components (C1 and C2), and one autochthonous tyrosine-like component (C4) were identified using the parallel factor analysis (PARAFAC) model. Compared with the traditional physical and chemical indicators, spatial heterogeneity of DOM was more obvious, which can reflect the subtle changes in groundwater system. Traditional indicators mainly reflect the regional characteristics of karst river system, while DOM fluorescence components reflect the attribute gaps of sampling types.

  12. Modeling of natural organic matter transport processes in groundwater.

    PubMed Central

    Yeh, T C; Mas-Pla, J; McCarthy, J F; Williams, T M

    1995-01-01

    A forced-gradient tracer test was conducted at the Georgetown site to study the transport of natural organic matter (NOM) in groundwater. In particular, the goal of this experiment was to investigate the interactions between NOM and the aquifer matrix. A detailed three-dimensional characterization of the hydrologic conductivity heterogeneity of the site was obtained using slug tests. The transport of a conservative tracer (chloride) was successfully reproduced using these conductivity data. Despite the good simulation of the flow field, NOM breakthrough curves could not be reproduced using a two-site sorption model with spatially constant parameters. Preliminary results suggest that different mechanisms for the adsorption/desorption processes, as well as their spatial variability, may significantly affect the transport and fate of NOM. PMID:7621798

  13. Rapid export of organic matter to the Mississippi Canyon

    NASA Astrophysics Data System (ADS)

    Bianchi, Thomas S.; Allison, Mead A.; Canuel, Elizabeth A.; Reide Corbett, D.; McKee, Brent A.; Sampere, Troy P.; Wakeham, Stuart G.; Waterson, Elizabeth

    2006-12-01

    Coastal margins, where rivers serve as the dominant control on productivity and delivery of dissolved and particulate materials, have been understudied.The potential importance of certain river-dominated margins (RiOMars), such as those of the Mississippi River plume, to the global carbon budget is garnering increased attention because of their disproportionate role in transporting terrigenous materials to the ocean [Dagg et al., 2004; McKee et al., 2004].This study concludes that labile (readily open to chemical, physical, or biological change) sedimentary organic matter, produced by in situ diatom production in the Mississippi River plume, is rapidly transported to the Mississippi Canyon. Despite the notion that canyon sediments are typically unstable and lack adequate food resources to support significant macrobenthic communities, this study suggests that productive RiOMars are important conduits for transporting fixed carbon from highly productive plume waters on the shelf to deeper benthic communities.

  14. New monoaromatic steroids in organic matter of the apocatagenesis zone

    NASA Astrophysics Data System (ADS)

    Kashirtsev, V. A.; Fomin, A. N.; Shevchenko, N. P.; Dolzhenko, K. V.

    2016-08-01

    According to the materials of geochemical study in the core of the ultradeep hole SV-27 of aromatic fractions of bitumoids of the Vilyui syneclise (East Siberia) by the method of chromatography-mass spectrometry, starting from the depth of >5000 m, four diastereomers of previously unknown hydrocarbons, which become predominant in the fraction at a depth of ˜6500 m, were distinguished. Similar hydrocarbons were found in organic matter of Upper Paleozoic rocks of the Kharaulakh anticlinorium in the Verkhoyansk folded area. According to the intense molecular ion m/z 366 and the character of the basic fragmental ions (m/z 238, 309, and 323), the major structure of the compounds studied was determined as 17-desmethyl-23-methylmonoaromatic steroid C27. The absence of such steroids in oil of the Vilyui syneclise shows that deep micro-oils did not participate in the formation of oil fringes of gas condensate deposits of the region.

  15. Dissolved organic matter uptake by Trichodesmium in the Southwest Pacific

    PubMed Central

    Benavides, Mar; Berthelot, Hugo; Duhamel, Solange; Raimbault, Patrick; Bonnet, Sophie

    2017-01-01

    The globally distributed diazotroph Trichodesmium contributes importantly to nitrogen inputs in the oligotrophic oceans. Sites of dissolved organic matter (DOM) accumulation could promote the mixotrophic nutrition of Trichodesmium when inorganic nutrients are scarce. Nano-scale secondary ion mass spectrometry (nanoSIMS) analyses of individual trichomes sampled in the South Pacific Ocean, showed significant 13C-enrichments after incubation with either 13C-labeled carbohydrates or amino acids. These results suggest that DOM could be directly taken up by Trichodesmium or primarily consumed by heterotrophic epibiont bacteria that ultimately transfer reduced DOM compounds to their host trichomes. Although the addition of carbohydrates or amino acids did not significantly affect bulk N2 fixation rates, N2 fixation was enhanced by amino acids in individual colonies of Trichodesmium. We discuss the ecological advantages of DOM use by Trichodesmium as an alternative to autotrophic nutrition in oligotrophic open ocean waters. PMID:28117432

  16. Dissolved organic matter uptake by Trichodesmium in the Southwest Pacific

    NASA Astrophysics Data System (ADS)

    Benavides, Mar; Berthelot, Hugo; Duhamel, Solange; Raimbault, Patrick; Bonnet, Sophie

    2017-01-01

    The globally distributed diazotroph Trichodesmium contributes importantly to nitrogen inputs in the oligotrophic oceans. Sites of dissolved organic matter (DOM) accumulation could promote the mixotrophic nutrition of Trichodesmium when inorganic nutrients are scarce. Nano-scale secondary ion mass spectrometry (nanoSIMS) analyses of individual trichomes sampled in the South Pacific Ocean, showed significant 13C-enrichments after incubation with either 13C-labeled carbohydrates or amino acids. These results suggest that DOM could be directly taken up by Trichodesmium or primarily consumed by heterotrophic epibiont bacteria that ultimately transfer reduced DOM compounds to their host trichomes. Although the addition of carbohydrates or amino acids did not significantly affect bulk N2 fixation rates, N2 fixation was enhanced by amino acids in individual colonies of Trichodesmium. We discuss the ecological advantages of DOM use by Trichodesmium as an alternative to autotrophic nutrition in oligotrophic open ocean waters.

  17. Systematic approaches to comprehensive analyses of natural organic matter

    USGS Publications Warehouse

    Leenheer, Jerry A.

    2009-01-01

    The more that is learned of the chemistry of aquatic natural organic matter (NOM) the greater is the scientific appreciation of the vast complexity of this subject. This complexity is due not only to a multiplicity of precursor molecules in any environment but to their associations with each other and with other components of local environments such as clays, mineral acids and dissolved metals. In addition, this complex system is subject to constant change owing to environmental variables and microbial action. Thus, there is a good argument that no two NOM samples are exactly the same even from the same source at nearly the same time. When ubiquity of occurrence, reaction with water treatment chemicals, and subsequent human exposure are added to the list of NOM issues, one can understand the appeal that this subject holds for a wide variety of environmental scientists.

  18. Ocean Warming–Acidification Synergism Undermines Dissolved Organic Matter Assembly

    PubMed Central

    Chen, Chi-Shuo; Anaya, Jesse M.; Chen, Eric Y-T; Farr, Erik; Chin, Wei-Chun

    2015-01-01

    Understanding the influence of synergisms on natural processes is a critical step toward determining the full-extent of anthropogenic stressors. As carbon emissions continue unabated, two major stressors—warming and acidification—threaten marine systems on several scales. Here, we report that a moderate temperature increase (from 30°C to 32°C) is sufficient to slow— even hinder—the ability of dissolved organic matter, a major carbon pool, to self-assemble to form marine microgels, which contribute to the particulate organic matter pool. Moreover, acidification lowers the temperature threshold at which we observe our results. These findings carry implications for the marine carbon cycle, as self-assembled marine microgels generate an estimated global seawater budget of ~1016 g C. We used laser scattering spectroscopy to test the influence of temperature and pH on spontaneous marine gel assembly. The results of independent experiments revealed that at a particular point, both pH and temperature block microgel formation (32°C, pH 8.2), and disperse existing gels (35°C). We then tested the hypothesis that temperature and pH have a synergistic influence on marine gel dispersion. We found that the dispersion temperature decreases concurrently with pH: from 32°C at pH 8.2, to 28°C at pH 7.5. If our laboratory observations can be extrapolated to complex marine environments, our results suggest that a warming–acidification synergism can decrease carbon and nutrient fluxes, disturbing marine trophic and trace element cycles, at rates faster than projected. PMID:25714090

  19. Priming-induced Changes in Permafrost Soil Organic Matter Decomposition

    NASA Astrophysics Data System (ADS)

    Pegoraro, E.; Schuur, E.; Bracho, R. G.

    2015-12-01

    Warming of tundra ecosystems due to climate change is predicted to thaw permafrost and increase plant biomass and litter input to soil. Additional input of easily decomposable carbon can alter microbial activity by providing a much needed energy source, thereby accelerating soil organic matter decomposition. This phenomenon, known as the priming effect, can increase CO2 flux from soil to the atmosphere. However, the extent to which this mechanism can decrease soil carbon stocks in the Arctic is unknown. This project assessed priming effects on permafrost soil collected from a moist acidic tundra site in Healy, Alaska. We hypothesized that priming would increase microbial activity by providing microbes with a fresh source of carbon, thereby increasing decomposition of old and slowly decomposing carbon. Soil from surface and deep layers were amended with multiple pulses of uniformly 13C labeled glucose and cellulose, and samples were incubated at 15° C to quantify whether labile substrate addition increased carbon mineralization. We quantified the proportion of old carbon mineralization by measuring 14CO2. Data shows that substrate addition resulted in higher respiration rates in amended soils; however, priming was only observed in deep layers, where 30% more soil-derived carbon was respired compared to control samples. This suggests that microbes in deep layers are limited in energy, and the addition of labile carbon increases native soil organic matter decomposition, especially in soil with greater fractions of slowly decomposing carbon. Priming in permafrost could exacerbate the effects of climate change by increasing mineralization rates of carbon accumulated over the long-term in deep layers. Therefore, quantifying priming effect in permafrost soils is imperative to understanding the dynamics of carbon turnover in a warmer world.

  20. Ocean warming-acidification synergism undermines dissolved organic matter assembly.

    PubMed

    Chen, Chi-Shuo; Anaya, Jesse M; Chen, Eric Y-T; Farr, Erik; Chin, Wei-Chun

    2015-01-01

    Understanding the influence of synergisms on natural processes is a critical step toward determining the full-extent of anthropogenic stressors. As carbon emissions continue unabated, two major stressors--warming and acidification--threaten marine systems on several scales. Here, we report that a moderate temperature increase (from 30°C to 32°C) is sufficient to slow--even hinder--the ability of dissolved organic matter, a major carbon pool, to self-assemble to form marine microgels, which contribute to the particulate organic matter pool. Moreover, acidification lowers the temperature threshold at which we observe our results. These findings carry implications for the marine carbon cycle, as self-assembled marine microgels generate an estimated global seawater budget of ~1016 g C. We used laser scattering spectroscopy to test the influence of temperature and pH on spontaneous marine gel assembly. The results of independent experiments revealed that at a particular point, both pH and temperature block microgel formation (32°C, pH 8.2), and disperse existing gels (35°C). We then tested the hypothesis that temperature and pH have a synergistic influence on marine gel dispersion. We found that the dispersion temperature decreases concurrently with pH: from 32°C at pH 8.2, to 28°C at pH 7.5. If our laboratory observations can be extrapolated to complex marine environments, our results suggest that a warming-acidification synergism can decrease carbon and nutrient fluxes, disturbing marine trophic and trace element cycles, at rates faster than projected.

  1. Effects of warming on stream biofilm organic matter use capabilities.

    PubMed

    Ylla, Irene; Canhoto, Cristina; Romaní, Anna M

    2014-07-01

    The understanding of ecosystem responses to changing environmental conditions is becoming increasingly relevant in the context of global warming. Microbial biofilm communities in streams play a key role in organic matter cycling which might be modulated by shifts in flowing water temperature. In this study, we performed an experiment at the Candal stream (Portugal) longitudinally divided into two reaches: a control half and an experimental half where water temperature was 3 °C above that of the basal stream water. Biofilm colonization was monitored during 42 days in the two stream halves. Changes in biofilm function (extracellular enzyme activities and carbon substrate utilization profiles) as well as chlorophyll a and prokaryote densities were analyzed. The biofilm in the experimental half showed a higher capacity to decompose cellulose, hemicellulose, lignin, and peptidic compounds. Total leucine-aminopeptidase, cellobiohydrolase and β-xylosidase showed a respective 93, 66, and 61% increase in activity over the control; much higher than would be predicted by only the direct temperature physical effect. In contrast, phosphatase and lipase activity showed the lowest sensitivity to temperature. The biofilms from the experimental half also showed a distinct functional fingerprint and higher carbon usage diversity and richness, especially due to a wider use of polymers and carbohydrates. The changes in the biofilm functional capabilities might be indirectly affected by the higher prokaryote and chlorophyll density measured in the biofilm of the experimental half. The present study provides evidence that a realistic stream temperature increase by 3 °C changes the biofilm metabolism to a greater decomposition of polymeric complex compounds and peptides but lower decomposition of lipids. This might affect stream organic matter cycling and the transfer of carbon to higher trophic levels.

  2. Photochemical formation of hydroxyl radical from effluent organic matter.

    PubMed

    Dong, Mei Mei; Rosario-Ortiz, Fernando L

    2012-04-03

    The photochemical formation of hydroxyl radical (HO•) from effluent organic matter (EfOM) was evaluated using three bulk wastewater samples collected at different treatment facilities under simulated sunlight. For the samples studied, the formation rates of HO•(R(HO•)) were obtained from the formation rate of phenol following the hydroxylation of benzene. The values of R(HO•) ranged from 2.3 to 3.8 × 10(-10) M s(-1) for the samples studied. The formation rate of HO• from nitrate photolysis (R(NO3)(HO•)) was determined to be 3.0 × 10(-7) M(HO)• M(NO3)(-1) s(-1). The HO• production rate from EfOM (R(EfOM)(HO•)) ranged from 0.76 to 1.3 × 10(-10) M s(-1). For the wastewater samples studied, R(EfOM)(HO•) varied from 1.5 to 2.4 × 10(-7) M(HO)• M(C)(-1) (s-1) on molarcarbon basis, which was close to HO• production from nitrate photolysis. The apparent quantum yield for the formation of HO• from nitrate (Φ(NO3-HO•)(a)) was determined as 0.010 ± 0.001 for the wavelength range 290-400 nm in ultrapure water. The apparent quantum yield for HO• formation in EfOM (Φ(EfOM-HO•)(a)) ranged from 6.1 to 9.8 × 10(-5), compared to 2.99 to 4.56 × 10(-5) for organic matter (OM) isolates. The results indicate that wastewater effluents could produce significant concentrations of HO•, as shown by potential higher nitrate levels and relatively higher quantum yields of HO• formation from EfOM.

  3. A new organic matter fractionation methodology for organic wastes: Bioaccessibility and complexity characterization for treatment optimization.

    PubMed

    Jimenez, Julie; Aemig, Quentin; Doussiet, Nicolas; Steyer, Jean-Philippe; Houot, Sabine; Patureau, Dominique

    2015-10-01

    Organic matter characterization is the starting point to describe organic waste treatments mechanisms and to propose their modeling. Two relevant characterization methodologies were frequently used in the literature based on chemical extractions and fluorescence spectroscopy. However, they could not be generalized to all the type of wastes because of the different molecules targeted. Consequently, a new fractionation methodology was proposed to unify the characterization of a wide range of organic wastes. This new method was built by merging the two previously mentioned protocols to simulate bioaccessibility combined with 3D fluorescence spectroscopy to highlight the complexity of the extracted organic fractions. Sixty samples including representative samples used to validate the method were characterized according to their bioaccessibility and their complexity. Thanks to a principal component analysis, organic wastes were classified according to their nature, their complexity and accessibility. The applicability of this method in statistical or dynamic models is very promising. Copyright © 2015. Published by Elsevier Ltd.

  4. Turnover of intra- and extra-aggregate organic matter at the silt-size scale

    Treesearch

    I. Virto; C. Moni; C. Swanston; C. Chenu

    2010-01-01

    Temperate silty soils are especially sensitive to organic matter losses associated to some agricultural management systems. Long-term preservation of organic C in these soils has been demonstrated to occur mainly in the silt- and clay-size fractions, although our knowledge about the mechanisms through which it happens remains unclear. Although organic matter in such...

  5. Impacts of heterogeneous organic matter on phenanthrene sorption--Equilibrium and kinetic studies with aquifer material

    USGS Publications Warehouse

    Karapanagioti, Hrissi K.; Kleineidam, Sybille; Sabatini, David A.; Grathwohl, Peter; Ligouis, Bertrand

    2000-01-01

    Sediment organic matter heterogeneity in sediments is shown to impact the sorption behavior of contaminants. We investigated the sorptive properties as well as the composition of organic matter in different subsamples (mainly grain size fractions) of the Canadian River Alluvium (CRA). Organic petrography was used as a new tool to describe and characterize the organic matter in the subsamples. The samples studied contained many different types of organic matter including bituminous coal particles. Differences in sorption behavior were explained based on these various types of organic matter. Subsamples containing predominately coaly, particulate organic matter showed the highest Koc, the highest nonlinearity of sorption isotherms and the slowest sorption kinetics. Soil subsamples with organic matter present as organic coatings around the quartz grains evidenced the lowest Koc, the most linear sorption isotherms and the fastest sorption kinetics, which was not limited by slow intraparticle diffusion. Due to the high sorption capacity of the coaly particles even when it is present as only a small fraction of the composite organic content (<3%) causes Koc values which are much higher than expected for soil organic matter (e.g. Koc − Kow relationships). The results show that the identification and quantification of the coaly particles within a sediment or soil sample is a prerequisite in order to understand or predict sorption behavior of organic pollutants.

  6. Riverine organic matter composition and fluxes to Hudson Bay

    NASA Astrophysics Data System (ADS)

    Kuzyk, Z. Z. A.; Macdonald, R. W.; Goni, M. A.; Godin, P.; Stern, G. A.

    2016-12-01

    With warming in northern regions, many changes including permafrost degradation, vegetation alteration, and wildfire incidence will impact the carbon cycle. Organic carbon (OC) carried by river runoff to northern oceans has the potential to provide integrated evidence of these impacts. Here, concentrations of dissolved (DOC) and particulate (POC) OC are used to estimate terrestrial OC transport in 17 major rivers draining varied vegetative and permafrost conditions into Hudson Bay and compositional data (lignin and 14C) to infer OC sources. Hudson Bay lies just south of the Arctic Circle in Canada and is surrounded by a large drainage basin (3.9 × 106 km2) dominated by permafrost. Analysis of POC and DOC in the 17 rivers indicates that DOC dominates the total OC load. The southern rivers dominate. The Nelson and Churchill Rivers to the southwest are particularly important suppliers of OC partly because of large drainage basins but also perhaps because of impacts by hydroelectric development, as suggested by a 14C age of DOC in the Churchill River of 2800 years. Higher DOC and POC concentrations in the southern rivers, which have substantive areas only partially covered by permafrost, compared to northern rivers draining areas with complete permafrost cover, implies that warming - and hence permafrost thawing - will lead to progressively higher DOC and POC loads for these rivers. Lignin composition in the organic matter (S/V and C/V ratios) reveals mixed sources of OC consistent with the dominant vegetation in the river basins. This vegetation is organized by latitude with southern regions below the tree line enriched by woody gymnosperm sources (boreal forest) and northern regions enriched with organic matter from non-woody angiosperms (flowering shrubs, tundra). Acid/Aldehyde composition together with Δ14C data for selected DOC samples suggest that most of the lignin has undergone oxidative degradation, particularly the DOC component. However, high Δ14C ages

  7. Response of Dissolved Organic Matter to Warming and Nitrogen Addition

    NASA Astrophysics Data System (ADS)

    Choi, J. H.; Nguyen, H.

    2014-12-01

    Dissolved Organic Matter (DOM) is a ubiquitous mixture of soluble organic components. Since DOM is produced from the terrestrial leachate of various soil types, soil may influence the chemistry and biology of freshwater through the input of leachate and run-off. The increased temperature by climate change could dramatically change the DOM characteristics of soils through enhanced decomposition rate and losses of carbon from soil organic matter. In addition, the increase in the N-deposition affects DOM leaching from soils by changing the carbon cycling and decomposition rate of soil decay. In this study, we conducted growth chamber experiments using two types of soil (wetland and forest) under the conditions of temperature increase and N-deposition in order to investigate how warming and nitrogen addition influence the characteristics of the DOM leaching from different soil types. This leachate controls the quantity and quality of DOM in surface water systems. After 10 months of incubation, the dissolved organic carbon (DOC) concentrations decreased for almost samples in the range of 7.6 to 87.3% (ANOVA, p<0.05). The specific UV absorption (SUVA) values also decreased for almost samples after the first 3 months and then increased gradually afterward in range of 3.3 to 108.4%. Both time and the interaction between time and the temperature had the statistically significant effects on the SUVA values (MANOVA, p<0.05). Humification index (HIX) showed the significant increase trends during the duration of incubation and temperature for almost the samples (ANOVA, p<0.05). Higher decreases in the DOC values and increases in HIX were observed at higher temperatures, whereas the opposite trend was observed for samples with N-addition. The PARAFAC results showed that three fluorescence components: terrestrial humic (C1), microbial humic-like (C2), and protein-like (C3), constituted the fluorescence matrices of soil samples. During the experiment, labile DOM from the soils was

  8. Mechanistic simulation of the vertical soil organic matter profile

    NASA Astrophysics Data System (ADS)

    Braakhekke, M.; Beer, C.; Reichstein, M.; Hoosbeek, M.; Kruijt, B.; Kabat, P.

    2013-12-01

    Soil organic matter (SOM) constitutes a large global pool of carbon that may play a considerable role for future climate. The vertical distribution of SOM in the profile may be important due to depth-dependence of physical, chemical, and biological conditions, and links to physical processes such as heat and moisture transport. The aim of this thesis is to develop a dynamic and mechanistic representation of the vertical SOM profile that can be applied for large scale simulations as a part of global ecosystem and earth system models. A model structure called SOMPROF was developed that dynamically simulates the SOM profile based on above and below ground litter input, decomposition, bioturbation, and liquid phase transport. Furthermore, three organic surface horizons are explicitly represented. Since the organic matter transport processes have been poorly quantified in the past and are difficult to observe directly, the model was calibrated with a Bayesian approach for two contrasting temperate forest sites in Europe. Different types of data were included in the parameter estimation, including: organic carbon stocks and concentrations, respiration rates, and excess lead-210 activity. The calibrations yielded good fits to the observations, and showed that the two sites differ considerably with respect to the relevance of the different processes. These differences agree well with expectations based on local conditions. However, the results also demonstrate the difficulties arising from convolution of the processes. Several parameters are poorly constrained and for one of the sites, several distinct regions in parameter space exist that yield acceptable fit. In a subsequent study it was found that radiocarbon observations can offer much additional constraint on several parameters, most importantly on the turnover rate of the slowest SOM fraction. Additionally, for one site, a prognostic simulation until 2100 was performed using the resulting a posteriori parameter

  9. Effect of three different remineralizing agents on enamel caries formation--an in vitro study.

    PubMed

    Sathe, N; Chakradhar Raju, R V S; Chandrasekhar, V

    2014-01-01

    Caries process is not a static one, but is dynamic with interspersed periods of demineralization and remineralization of enamel, intimately related and occurs episodically based upon the presence of cariogenic bacteria in dental plaque and the availability of refined carbohydrates for fermentation to organic acids. Early enamel caries could be reversed with avoidance of frank cavitation. The main objective of this study is to check wether enamel demineralization can be prevented by using the remineralizing agents. Forty freshly extracted human central incisors were selected and stored in saline at normal temperature. A window of 3 X 3mm enamel was created and all the specimens were then randomly divided into 4 groups of 10 each. Group I--teeth received no treatment, Group II--teeth treated with Acidulated Phosphate Flouride gel, Group III--teeth treated with Tooth Mousse Plus, Group IV--teeth treated with Remin+. Samples in all the groups were kept in artificial saliva for 24 hours and subjected to modified Ten Cate's solution at an acidic pH of 3.5 for 10 days. The samples were sectioned and subjected to SEM evaluation. Scanning Electron Microscope(SEM) images showed decrease in pore volume of the enamel in all the treatment groups compared to the control group indicating increase in resistance to demineralization in acidic pH. The three groups of remineralizing agents, Acidulated Phosphate Fluoride gel, Tooth Mousse Plus and Remin + showed significant increase in fluoride content and negligible increase in calcium content indicating there is remineraliztion.

  10. Remineralization of Artificial Dentin Lesions via the Polymer-Induced Liquid-Precursor (PILP) Process

    PubMed Central

    Thula-Mata, Taili; Burwell, Anora; Gower, Laurie B.; Habeliz, Stefan; Marshall, Grayson W.

    2011-01-01

    Acid-etched dentin samples with a zone of demineralized dentin were remineralized via the polymer-induced liquid-precursor (PILP) process. Poly-L-aspartic acid was used as the polymeric process-directing agent. Samples were incubated in the mineralization solution for 1–4 weeks. Dentin samples remineralized by the PILP process presented a surface morphology very similar to the intact mineralized dentin’s architecture, in contrast to samples mineralized via the conventional nucleation and growth method (without polymer additive), which led to a superficial crust of randomly organized mineral crystals. Energy dispersive x-ray spectroscopy analysis of the PILP-mineralized samples showed the presence of calcium and phosphate ions at high levels. Since no hydroxyapatite (HA) clusters were observed on the surface of the PILP-mineralized samples, we could conclude the signal was produced from the mineral embedded within the dentin matrix. TEM and diffraction analyses suggest that both intrafibrillar and interfibrillar remineralization occurred in the demineralized dentin matrix. PMID:24839340

  11. Effect of Biomimetic Remineralization on the Dynamic Nanomechanical Properties of Dentin Hybrid Layers

    PubMed Central

    Ryou, H.; Niu, L.-N.; Dai, L.; Pucci, C.R.; Arola, D.D.; Pashley, D.H.; Tay, F.R.

    2011-01-01

    The mineral and organic phases of mineralized dentin contribute co-operatively to its strength and toughness. This study tested the null hypothesis that there is no difference in nano-dynamic mechanical behavior (complex modulus-E*; loss modulus-E′′; storage modulus-E′; in GPa) of dentin hybrid layers (baseline: E*, 3.86 ± 0.24; E′′, 0.23 ± 0.05; E′, 3.85 ± 0.24) created by an etch-and-rinse adhesive in the presence or absence of biomimetic remineralization after in vitro aging. Using scanning probe microscopy and nano-dynamic mechanical analysis, we demonstrated that biomimetic remineralization restored the nano-dynamic mechanical behavior of heavily remineralized, resin-sparse regions of dentin hybrid layers (E*, 19.73 ± 3.85; E′′, 8.75 ± 3.97; E′, 16.02 ± 2.58) to those of the mineralized dentin base (E*, 19.20 ± 2.42; E′′, 6.57 ± 1.96; E′, 17.39 ± 2.0) [p > 0.05]. Conversely, those resin-sparse, water-rich regions degraded in the absence of biomimetic remineralization, with significant decline [p < 0.05] in their complex and storage moduli (E*, 0.83 ± 0.35; E′′, 0.88 ± 0.24; E′, 0.62 ± 0.32). Intrafibrillar apatite deposition preserves the integrity of resin-sparse regions of hybrid layers by restoring their nanomechanical properties to those exhibited by mineralized dentin. PMID:21730254

  12. Primary production contributes to non-labile organic matter generation in the estuarine and coastal zone

    NASA Astrophysics Data System (ADS)

    Zhu, Z.; Zhang, J.; Wu, Y.

    2013-12-01

    Oceanic generation of refractory organic matter is an important pathway for safe and long time scale safe carbon sequestration. Since refractory/non-labile organic matter generation is highly related with microorganism, estuaries and coastal zones with high primary production should be important regions for such generation process. We investigated the particulate organic matter in the estuarine and adjacent coastal zone of the Changjiang (Yangtze River). Peptidoglycan estimated on the basis of D-form of amino acids enantiomers showed a large variation in the estuary but generally lower than the lower reaches (XLJ). Peptidoglycan quickly decreased from the river to the sea, when DI increased from negative to < 0.5. The decrease can be due to dilution by fresh organic matter and seawater. But when DI > 0.5, the peptidoglycan concentration began to positively relate with organic matter freshness and normalized peptidoglycan was comparable to or even higher than that in terrestrial organic matter. This indicates that estuarine and coastal zones make a significant contribution to non-labile organic matter production. Further analysis suggests that heterotrophic bacteria and Synechococcus are notable contributors. For large river's estuary and adjacent coastal zone, terrestrial inputs promote high in situ production. The generated fresh organic matter in the estuary further promotes heterotrophic bacteria. Since the generation of non-labile organic matter process is both contributed by autotrophic and heterotrophic microorganisms, primary production is indirectly generating refractory/non-labile organic matter. And the refractory/non labile organic matter production occurs routinely during every productive season. On another aspect, considering the shallow water depth (usually < 100 m) and high sedimentation rate (e.g., 0-5 cm/year for the Changjiang Estuary), the organic matter can be buried in sediment much more easily than it is in the open ocean.

  13. Geochemical drivers of organic matter decomposition in Arctic tundra soils

    DOE PAGES

    Herndon, Elizabeth M.; Yang, Ziming; Graham, David E.; ...

    2015-12-07

    Climate change is warming tundra ecosystems in the Arctic, resulting in the decomposition of previously-frozen soil organic matter (SOM) and release of carbon (C) to the atmosphere; however, the processes that control SOM decomposition and C emissions remain highly uncertain. In this study, we evaluate geochemical factors that influence anaerobic production of carbon dioxide (CO2) and methane (CH4) in the active layers of four ice-wedge polygons. Surface and soil pore waters were collected during the annual thaw season over a two-year period in an area containing waterlogged, low-centered polygons and well-drained, high-centered polygons. We report spatial and seasonal patterns ofmore » dissolved gases in relation to the geochemical properties of Fe and organic C as determined using spectroscopic and chromatographic techniques. Iron was present as Fe(II) in soil solution near the permafrost boundary but enriched as Fe(III) in the middle of the active layer, similar to dissolved aromatic-C and organic acids. Dissolved CH4 increased relative to dissolved CO2 with depth and varied with soil moisture in the middle of the active layer in patterns that were positively correlated with the proportion of dissolved Fe(III) in transitional and low-centered polygon soils but negatively correlated in the drier flat- and high-centered polygons. These results suggest that microbial-mediated Fe oxidation and reduction influence respiration/fermentation of SOM and production of substrates (e.g., low-molecular-weight organic acids) for methanogenesis. As a result, we infer that geochemical differences induced by water saturation dictate microbial products of SOM decomposition, and Fe geochemistry is an important factor regulating methanogenesis in anoxic tundra soils.« less

  14. Geochemical drivers of organic matter decomposition in Arctic tundra soils

    SciTech Connect

    Herndon, Elizabeth M.; Yang, Ziming; Graham, David E.; Wullschleger, Stan D.; Gu, Baohua; Liang, Liyuan; Bargar, John; Janot, Noemie; Regier, Tom Z.

    2015-12-07

    Climate change is warming tundra ecosystems in the Arctic, resulting in the decomposition of previously-frozen soil organic matter (SOM) and release of carbon (C) to the atmosphere; however, the processes that control SOM decomposition and C emissions remain highly uncertain. In this study, we evaluate geochemical factors that influence anaerobic production of carbon dioxide (CO2) and methane (CH4) in the active layers of four ice-wedge polygons. Surface and soil pore waters were collected during the annual thaw season over a two-year period in an area containing waterlogged, low-centered polygons and well-drained, high-centered polygons. We report spatial and seasonal patterns of dissolved gases in relation to the geochemical properties of Fe and organic C as determined using spectroscopic and chromatographic techniques. Iron was present as Fe(II) in soil solution near the permafrost boundary but enriched as Fe(III) in the middle of the active layer, similar to dissolved aromatic-C and organic acids. Dissolved CH4 increased relative to dissolved CO2 with depth and varied with soil moisture in the middle of the active layer in patterns that were positively correlated with the proportion of dissolved Fe(III) in transitional and low-centered polygon soils but negatively correlated in the drier flat- and high-centered polygons. These results suggest that microbial-mediated Fe oxidation and reduction influence respiration/fermentation of SOM and production of substrates (e.g., low-molecular-weight organic acids) for methanogenesis. As a result, we infer that geochemical differences induced by water saturation dictate microbial products of SOM decomposition, and Fe geochemistry is an important factor regulating methanogenesis in anoxic tundra soils.

  15. Contributions of organic and inorganic matter to sediment ...

    EPA Pesticide Factsheets

    A mixing model derived from first principles describes the bulk density (BD) of intertidal wetland sediments as a function of loss on ignition (LOI). The model assumes the bulk volume of sediment equates to the sum of self-packing volumes of organic and mineral components or BD = 1/[LOI/k1 + (1-LOI)/k2], where k1 and k2 are the self-packing densities of the pure organic and inorganic components, respectively. The model explained 78% of the variability in total BD when fitted to 5075 measurements drawn from 33 wetlands distributed around the conterminous United States. The values of k1 and k2 were estimated to be 0.085 ± 0.0007 g cm-3 and 1.99 ± 0.028 g cm-3, respectively. Based on the fitted organic density (k1) and constrained by primary production, the model suggests that the maximum steady state accretion arising from the sequestration of refractory organic matter is ≤ 0.3 cm yr-1. Thus, tidal peatlands are unlikely to survive indefinitely a higher rate of sea-level rise in the absence of a significant source of mineral sediment. Application of k2 to a mineral sediment load typical of East and eastern Gulf Coast estuaries gives a vertical accretion rate from inorganic sediment of 0.2 cm yr-1. Total steady state accretion is the sum of the parts and therefore should not be greater than 0.5 cm yr-1 under the assumptions of the model. Accretion rates could deviate from this value depending on variation in plant productivity, root:shoot ratio, suspended sedim

  16. First data on methylhopanes in Lower Cambrian organic matter of the Siberian platform

    NASA Astrophysics Data System (ADS)

    Parfenova, T. M.

    2017-07-01

    Hopane hydrocarbons of bitumoids from the organic matter of the Lower Cambrian Sinyaya and Kutorgina formations on the northern slope of the Aldan anteclise were studied using chromatography-mass spectrometry. Methylhopanes were found for the first time in autochthonous bitumoids of scattered organic matter from Cambrian sedimentary basins in Siberia. The biological sources of these molecules, along with the features of geochemistry, sedimentation conditions, diagenesis, and degree of maturity of methylhopanecontaining organic matter are considered. Methylhopanes were recommended to be used jointly with other biomarkers of the Sinyaya formation rocks enriched in organic matter to determine the possible source of naphthides in the southeastern part of the Siberian platform.

  17. Opposing effects of different soil organic matter fractions on crop yields.

    PubMed

    Wood, Stephen A; Sokol, Noah; Bell, Colin W; Bradford, Mark A; Naeem, Shahid; Wallenstein, Matthew D; Palm, Cheryl A

    2016-10-01

    Soil organic matter is critical to sustainable agriculture because it provides nutrients to crops as it decomposes and increases nutrient- and water-holding capacity when built up. Fast- and slow-cycling fractions of soil organic matter can have different impacts on crop production because fast-cycling fractions rapidly release nutrients for short-term plant growth and slow-cycling fractions bind nutrients that mineralize slowly and build up water-holding capacity. We explored the controls on these fractions in a tropical agroecosystem and their relationship to crop yields. We performed physical fractionation of soil organic matter from 48 farms and plots in western Kenya. We found that fast-cycling, particulate organic matter was positively related to crop yields, but did not have a strong effect, while slower-cycling, mineral-associated organic matter was negatively related to yields. Our finding that slower-cycling organic matter was negatively related to yield points to a need to revise the view that stabilization of organic matter positively impacts food security. Our results support a new paradigm that different soil organic matter fractions are controlled by different mechanisms, potentially leading to different relationships with management outcomes, like crop yield. Effectively managing soils for sustainable agriculture requires quantifying the effects of specific organic matter fractions on these outcomes.

  18. Partition of nonpolar organic pollutants from water to soil and sediment organic matters

    USGS Publications Warehouse

    Chiou, C.T.

    1995-01-01

    The partition coefficients (Koc) of carbon tetrachloride and 1,2-dichlorobenzene between normal soil/sediment organic matter and water have been determined for a large set of soils, bed sediments, and suspended solids from the United States and the People's Republic of China. The Koc values for both solutes are quite invariant either for the soils or for the bed sediments; the values on bed sediments are about twice those on soils. The similarity of Koc values between normal soils and between normal bed sediments suggests that natural organic matters in soils (or sediments) of different geographic origins exhibit comparable polarities and possibly comparable compositions. The results also suggest that the process that converts eroded soils into bed sediments brings about a change in the organic matter property. The difference between soil and sediment Koc values provides a basis for identifying the source of suspended solids in river waters. The very high Koc values observed for some special soils and sediments are diagnostic of severe anthropogenic contamination.

  19. [Effects of dissolved organic matter on phenanthrene adsorption by soil].

    PubMed

    Xiong, Wei; Ling, Wan-ting; Gao, Yan-zheng; Li, Qiu-ling; Dai, Jing-yu

    2007-02-01

    This paper studied the effects of exotic and native dissolved organic matter (DOM) on the phenanthrene adsorption by three soils differed in soil organic carbon content (foc). The exotic DOM came from decayed rice straw, while the native DOM was extracted from the test soils. In all cases, the adsorption of phenanthrene by treated soils could be well described with linear-type model, and there was a positive correlation between adsorption coefficient (Kd) and foc Compared with the control, the Kd value of test soils after native DOM removed was increased by 7. 08% -21. 4% , and the increment (deltaKd) was positively correlated with fo,, indicating that the presence of soil native DOM impeded the phenanthrene adsorption by soil. The effects of exotic DOM on phenanthrene adsorption had a close relation with its added concentration in soil-water system. Within the range of 0-106 mg DOC x L(-1) , the K, value increased first, and then decreased with the increase of added exotic DOM concentration. Lower concentrations of added exotic DOM promoted the phenanthrene adsorption by soil, while higher concentrations ( I> or =52 mg DOC x L(-1)) of it obviously impeded this adsorption. These effects of exotic and native DOM on soil phenanthrene adsorption were considered to be related to the association of phenanthrene with DOM in solution, and the ' cumulative adsorption effect' between soil solid and aqueous phases.

  20. Effects of agricultural practices on organic matter degradation in ditches

    PubMed Central

    Hunting, Ellard R.; Vonk, J. Arie; Musters, C.J.M.; Kraak, Michiel H.S.; Vijver, Martina G.

    2016-01-01

    Agricultural practices can result in differences in organic matter (OM) and agricultural chemical inputs in adjacent ditches, but its indirect effects on OM composition and its inherent consequences for ecosystem functioning remain uncertain. This study determined the effect of agricultural practices (dairy farm grasslands and hyacinth bulb fields) on OM degradation by microorganisms and invertebrates with a consumption and food preference experiment in the field and in the laboratory using natural OM collected from the field. Freshly cut grass and hyacinths were also offered to control for OM composition and large- and small mesh-sizes were used to distinguish microbial decomposition and invertebrate consumption. Results show that OM decomposition by microorganisms and consumption by invertebrates was similar throughout the study area, but that OM collected from ditches adjacent grasslands and freshly cut grass and hyacinths were preferred over OM collected from ditches adjacent to a hyacinth bulb field. In the case of OM collected from ditches adjacent hyacinth bulb fields, both microbial decomposition and invertebrate consumption were strongly retarded, likely resulting from sorption and accumulation of pesticides. This outcome illustrates that differences in agricultural practices can, in addition to direct detrimental effects on aquatic organisms, indirectly alter the functioning of adjacent aquatic ecosystems. PMID:26892243

  1. Effects of agricultural practices on organic matter degradation in ditches

    NASA Astrophysics Data System (ADS)

    Hunting, Ellard R.; Vonk, J. Arie; Musters, C. J. M.; Kraak, Michiel H. S.; Vijver, Martina G.

    2016-02-01

    Agricultural practices can result in differences in organic matter (OM) and agricultural chemical inputs in adjacent ditches, but its indirect effects on OM composition and its inherent consequences for ecosystem functioning remain uncertain. This study determined the effect of agricultural practices (dairy farm grasslands and hyacinth bulb fields) on OM degradation by microorganisms and invertebrates with a consumption and food preference experiment in the field and in the laboratory using natural OM collected from the field. Freshly cut grass and hyacinths were also offered to control for OM composition and large- and small mesh-sizes were used to distinguish microbial decomposition and invertebrate consumption. Results show that OM decomposition by microorganisms and consumption by invertebrates was similar throughout the study area, but that OM collected from ditches adjacent grasslands and freshly cut grass and hyacinths were preferred over OM collected from ditches adjacent to a hyacinth bulb field. In the case of OM collected from ditches adjacent hyacinth bulb fields, both microbial decomposition and invertebrate consumption were strongly retarded, likely resulting from sorption and accumulation of pesticides. This outcome illustrates that differences in agricultural practices can, in addition to direct detrimental effects on aquatic organisms, indirectly alter the functioning of adjacent aquatic ecosystems.

  2. Mineral surface-organic matter interactions: basics and applications

    NASA Astrophysics Data System (ADS)

    Valdrè, G.; Moro, D.; Ulian, G.

    2012-03-01

    The ability to control the binding of biological and organic molecules to a crystal surface is central in several fields; for example, in biotechnology, catalysis, molecular microarrays, biosensors preparation and environmental sciences. The nano-morphology and nanostructure at the surface may have physico-chemical properties that are very different from those of the underlying mineral substrate. Recent developments in scanning probe microscopy (SPM) have widened the spectrum of possible investigations that can be performed at the nanometric level on the surface of minerals. They range from the study of physical properties such as surface potential, electric field topological determination, Brønsted-Lowry site distributions, to chemical and spectroscopic analysis in air, in liquid or in gaseous environments. After an introduction to SPM modes of operation and new SPM-based technological developments, we will present recent examples of applications in the study of interactions between organic matter and mineral surface and report on the advances in knowledge that have been made by the use of scanning probe microscopy.

  3. Role of dissolved organic matter in ice photochemistry.

    PubMed

    Grannas, Amanda M; Pagano, Lisa P; Pierce, Brittany C; Bobby, Rachel; Fede, Alexis

    2014-09-16

    In this study, we provide evidence that dissolved organic matter (DOM) plays an important role in indirect photolysis processes in ice, producing reactive oxygen species (ROS) and leading to the efficient photodegradation of a probe hydrophobic organic pollutant, aldrin. Rates of DOM-mediated aldrin loss are between 2 and 56 times faster in ice than in liquid water (depending on DOM source and concentration), likely due to a freeze-concentration effect that occurs when the water freezes, providing a mechanism to concentrate reactive components into smaller, liquid-like regions within or on the ice. Rates of DOM-mediated aldrin loss are also temperature dependent, with higher rates of loss as temperature decreases. This also illustrates the importance of the freeze-concentration effect in altering reaction kinetics for processes occurring in environmental ices. All DOM source types studied were able to mediate aldrin loss, including commercially available fulvic and humic acids and an authentic Arctic snow DOM sample isolated by solid phase extraction, indicating the ubiquity of DOM in indirect photochemistry in environmental ices.

  4. Examining the association of DDX compounds to sedimentary organic matter

    NASA Astrophysics Data System (ADS)

    Weathers, N.; Rowlett, K.; Geng, Z.; Morrison, A.; White, H. K.

    2016-02-01

    The association of hydrophobic organic contaminants (HOCs) with sedimentary organic matter (OM) influences their mobility and bioavailability in the environment. Determining whether these associations result from mechanisms such as sorption, chemical binding or encapsulation is critical for predicting their long-term fate. The pesticide DDT (dichlorodiphenyltrichloroethane) has been previously observed to form bound residues with sedimentary OM although the mechanisms of this association are yet to be fully explored. DDT, which was sprayed ubiquitously in the 1950s and early 1960s, can still be found in the environment today along with its three major metabolites, DDE, DDD and DDMU (collectively known as DDX compounds), and therefore presents a unique opportunity to further explore its long-term associations with OM. To this end, a sediment core from a salt marsh in Dover, Delaware known to contain DDX compounds was collected. A maximum concentration of DDX compounds was found at sediment depths corresponding to the time of the widespread usage of DDT. An initial solvent extraction with toluene provided data on the loosely associated DDX fraction followed by subsequent treatments with sulfuric acid and saponification to release DDX that was encapsulated or bound to the sedimentary matrix. Determining the physical disposition of DDX compounds that persist in sediments for several decades is integral to determining the extent to which they are mobile, bioavailable or sequestered in the marsh.

  5. Quenching of excited triplet states by dissolved natural organic matter.

    PubMed

    Wenk, Jannis; Eustis, Soren N; McNeill, Kristopher; Canonica, Silvio

    2013-11-19

    Excited triplet states of aromatic ketones and quinones are used as proxies to assess the reactivity of excited triplet states of the dissolved organic matter ((3)DOM*) in natural waters. (3)DOM* are crucial transients in environmental photochemistry responsible for contaminant transformation, production of reactive oxygen species, and potentially photobleaching of DOM. In recent photochemical studies aimed at clarifying the role of DOM as an inhibitor of triplet-induced oxidations of organic contaminants, aromatic ketones have been used in the presence of DOM, and the question of a possible interaction between their excited triplet states and DOM has emerged. To clarify this issue, time-resolved laser spectroscopy was applied to measure the excited triplet state quenching of four different model triplet photosensitizers induced by a suite of DOM from various aquatic and terrestrial sources. While no quenching for the anionic triplet sensitizers 4-carboxybenzophenone (CBBP) and 9,10-anthraquinone-2,6-disulfonic acid (2,6-AQDS) was detected, second-order quenching rate constants with DOM for the triplets of 2-acetonaphthone (2AN) and 3-methoxyacetophenone (3MAP) in the range of 1.30-3.85 × 10(7) L mol(C)(-1) s(-1) were determined. On the basis of the average molecular weight of DOM molecules, the quenching for these uncharged excited triplet molecules is nearly diffusion-controlled, but significant quenching (>10%) in aerated water is not expected to occur below DOM concentrations of 22-72 mg(C) L(-1).

  6. Global effects of agriculture on fluvial dissolved organic matter

    NASA Astrophysics Data System (ADS)

    Graeber, Daniel; Boëchat, Iola G.; Encina-Montoya, Francisco; Esse, Carlos; Gelbrecht, Jörg; Goyenola, Guillermo; Gücker, Björn; Heinz, Marlen; Kronvang, Brian; Meerhoff, Mariana; Nimptsch, Jorge; Pusch, Martin T.; Silva, Ricky C. S.; von Schiller, Daniel; Zwirnmann, Elke

    2015-11-01

    Agricultural land covers approximately 40% of Earth’s land surface and affects hydromorphological, biogeochemical and ecological characteristics of fluvial networks. In the northern temperate region, agriculture also strongly affects the amount and molecular composition of dissolved organic matter (DOM), which constitutes the main vector of carbon transport from soils to fluvial networks and to the sea, and is involved in a large variety of biogeochemical processes. Here, we provide first evidence about the wider occurrence of agricultural impacts on the concentration and composition of fluvial DOM across climate zones of the northern and southern hemispheres. Both extensive and intensive farming altered fluvial DOM towards a more microbial and less plant-derived composition. Moreover, intensive farming significantly increased dissolved organic nitrogen (DON) concentrations. The DOM composition change and DON concentration increase differed among climate zones and could be related to the intensity of current and historical nitrogen fertilizer use. As a result of agriculture intensification, increased DON concentrations and a more microbial-like DOM composition likely will enhance the reactivity of catchment DOM emissions, thereby fuelling the biogeochemical processing in fluvial networks, and resulting in higher ecosystem productivity and CO2 outgassing.

  7. Contaminant-mediated photobleaching of wetland chromophoric dissolved organic matter.

    PubMed

    Langlois, Maureen C; Weavers, Linda K; Chin, Yu-Ping

    2014-09-20

    Photolytic transformation of organic contaminants in wetlands can be mediated by chromophoric dissolved organic matter (CDOM), which in turn can lose its reactivity from photobleaching. We collected water from a small agricultural wetland (Ohio), Kawai Nui Marsh (Hawaii), the Everglades (Florida), and Okefenokee Swamp (Georgia) to assess the effect of photobleaching on the photofate of two herbicides, acetochlor and isoproturon. Analyte-spiked water samples were irradiated using a solar simulator and monitored for changes in CDOM light absorbance and dissolved oxygen. Photobleaching did not significantly impact the indirect photolysis rates of either herbicide over 24 hours of irradiation. Surprisingly, the opposite effect was observed with isoproturon, which accelerated DOM photobleaching. This phenomenon was more pronounced in higher-CDOM waters, and we believe that the redox pathway between triplet-state CDOM and isoproturon may be responsible for our observations. By contrast, acetochlor indirect photolysis was dependent on reaction with the hydroxyl radical and did not accelerate photobleaching of wetland water as much as isoproturon. Finally, herbicide indirect photolysis rate constants did not correlate strongly to any one chemical or optical property of the sampled waters.

  8. Global effects of agriculture on fluvial dissolved organic matter.

    PubMed

    Graeber, Daniel; Boëchat, Iola G; Encina-Montoya, Francisco; Esse, Carlos; Gelbrecht, Jörg; Goyenola, Guillermo; Gücker, Björn; Heinz, Marlen; Kronvang, Brian; Meerhoff, Mariana; Nimptsch, Jorge; Pusch, Martin T; Silva, Ricky C S; von Schiller, Daniel; Zwirnmann, Elke

    2015-11-06

    Agricultural land covers approximately 40% of Earth's land surface and affects hydromorphological, biogeochemical and ecological characteristics of fluvial networks. In the northern temperate region, agriculture also strongly affects the amount and molecular composition of dissolved organic matter (DOM), which constitutes the main vector of carbon transport from soils to fluvial networks and to the sea, and is involved in a large variety of biogeochemical processes. Here, we provide first evidence about the wider occurrence of agricultural impacts on the concentration and composition of fluvial DOM across climate zones of the northern and southern hemispheres. Both extensive and intensive farming altered fluvial DOM towards a more microbial and less plant-derived composition. Moreover, intensive farming significantly increased dissolved organic nitrogen (DON) concentrations. The DOM composition change and DON concentration increase differed among climate zones and could be related to the intensity of current and historical nitrogen fertilizer use. As a result of agriculture intensification, increased DON concentrations and a more microbial-like DOM composition likely will enhance the reactivity of catchment DOM emissions, thereby fuelling the biogeochemical processing in fluvial networks, and resulting in higher ecosystem productivity and CO2 outgassing.

  9. Global effects of agriculture on fluvial dissolved organic matter

    PubMed Central

    Graeber, Daniel; Boëchat, Iola G.; Encina-Montoya, Francisco; Esse, Carlos; Gelbrecht, Jörg; Goyenola, Guillermo; Gücker, Björn; Heinz, Marlen; Kronvang, Brian; Meerhoff, Mariana; Nimptsch, Jorge; Pusch, Martin T.; Silva, Ricky C. S.; von Schiller, Daniel; Zwirnmann, Elke

    2015-01-01

    Agricultural land covers approximately 40% of Earth’s land surface and affects hydromorphological, biogeochemical and ecological characteristics of fluvial networks. In the northern temperate region, agriculture also strongly affects the amount and molecular composition of dissolved organic matter (DOM), which constitutes the main vector of carbon transport from soils to fluvial networks and to the sea, and is involved in a large variety of biogeochemical processes. Here, we provide first evidence about the wider occurrence of agricultural impacts on the concentration and composition of fluvial DOM across climate zones of the northern and southern hemispheres. Both extensive and intensive farming altered fluvial DOM towards a more microbial and less plant-derived composition. Moreover, intensive farming significantly increased dissolved organic nitrogen (DON) concentrations. The DOM composition change and DON concentration increase differed among climate zones and could be related to the intensity of current and historical nitrogen fertilizer use. As a result of agriculture intensification, increased DON concentrations and a more microbial-like DOM composition likely will enhance the reactivity of catchment DOM emissions, thereby fuelling the biogeochemical processing in fluvial networks, and resulting in higher ecosystem productivity and CO2 outgassing. PMID:26541809

  10. Chromophoric dissolved organic matter export from U.S. rivers

    USGS Publications Warehouse

    Spencer, Robert G. M.; Aiken, George R.; Dornblaser, Mark M.; Butler, Kenna D.; Holmes, R. Max; Fiske, Greg; Mann, Paul J.; Stubbins, Aron

    2013-01-01

    Chromophoric dissolved organic matter (CDOM) fluxes and yields from 15 major U.S. rivers draining an assortment of terrestrial biomes are presented. A robust relationship between CDOM and dissolved organic carbon (DOC) loads is established (e.g., a350 versus DOC; r2 = 0.96, p < 0.001). Calculated CDOM yields are also correlated to watershed percent wetland (e.g. a350; r2 = 0.81, p < 0.001) providing a method for the estimation of CDOM export from ungauged watersheds. A large variation in CDOM yields was found across the rivers. The two rivers in the north-eastern U.S. (Androscoggin and Penobscot), the Edisto draining into the South Atlantic Bight, and some rivers draining into the Gulf of Mexico (Atchafalaya and Mobile) exhibit the highest CDOM yields, linked to extensive wetlands in these watersheds. If the Edisto CDOM yield is representative of other rivers draining into the South Atlantic Bight, this would result in a CDOM load equivalent to that of the Mississippi from a region of approximately 10% of the Mississippi watershed, indicating the importance of certain regions with respect to the role of terrigenous CDOM in ocean color budgets.

  11. Hydrology controls dissolved organic matter (DOM) quality and dynamics

    NASA Astrophysics Data System (ADS)

    Fasching, Christina; Schelker, Jakob; Ulseth, Amber; Singer, Gabriel; Steniczka, Gertraud; Battin, Tom

    2014-05-01

    Headwater streams are major contributors to carbon cycling. It is therefore of utmost importance to understand the dynamics of dissolved organic matter (DOM) and its drivers in these ecosystems. Here we present data from more than 4,000 individual DOM measurements from Oberer Seebach, a 3rd-order stream draining a largely pristine alpine catchment (Lunz am See, Austria). We determined the concentration of streamwater and hyporheic dissolved organic carbon and a suite of optical properties of DOM based on a diurnal sampling design over almost three years; we also monitored various hydrological and climate parameters over that same time. Optical properties were determined from absorbance measurements and parallel factor analysis (PARAFAC) modelling of Excitation emission matrices. We also estimated DOM export fluxes from Oberer Seebach and the contributions of the various chromophoric and fluorescent components to these exports. Preliminary results suggest that DOM in Oberer Seebach was largely of terrigenous origin throughout the year. However during periods of low discharge autochthonous DOM export increased, indicating freshly produced DOM possibly from benthic algae. Hyphoreic and streamwater DOM composition and its dynamics were tightly coupled in time at baseflow, yet displaying higher variability as discharge increased. Our timeseries studies highlight the relevance of the flow regime on the dynamics, origin and composition of DOM in a headwater stream. We discuss these findings in the context of extreme hydrological events on carbon fluxes.

  12. Do Long-Term Changes in Organic Matter Inputs to Forest Soils Affect Dissolved Organic Matter Chemistry and Export?

    NASA Astrophysics Data System (ADS)

    Lajtha, K.; Strid, A.; Lee, B. S.

    2014-12-01

    Dissolved organic matter (DOM) production and transport play an important role in regulating organic matter (OM) distribution through a soil profile and ultimately, OM stabilization or export to aquatic systems. The contributions of varying OM inputs to the quality and amount of DOM as it passes through a soil profile remain relatively unknown. The Detrital Input and Removal Treatment (DIRT) site at the H. J. Andrews Experimental Forest in Oregon has undergone 17 years of litter, wood and root input manipulations and allows us to guage shifts in DOM chemistry induced by long-term changes to aboveground and belowground OM additions and exclusions. Using fluorescence and UV spectroscopy to characterize fluorescent properties, extent of decomposition, and sources of DOM in streams and soil solutions collected with lysimeters and soil extractions, we have assessed the importance of fresh OM inputs to DOM chemistry. Soil extracts from DIRT plots had a higher fluorescence index (FI) than lysimeter solutions or stream water. A high FI in surface water is generally interpreted as indicative of a high proportion of microbially-derived DOM. However, we suspect that the high FI in soil extracts is due to a higher proportion of non-aromatic DOM from fresh soil that microorganisms consume in transit through the soil profile to lysimeters or to streams. High redox index (RI) values were observed in lysimeters from the April 2014 sampling compared with the November 2013 sampling. These RI values show evidence of more reducing conditions at the end of the rainy season in the spring compared to the onset of the rainy season in the fall. Lysimeter water collected in No Input, No Litter, and No Root treatments contained high proportions of protein, suggesting the absence of carbon inputs changes activities of the microbial community. Observed variations reflect the viability of using fluorescent properties to explore the terrestrial-aquatic interface.

  13. Organic matter in the ancient Alpine Tethyan Ocean Continental Transition

    NASA Astrophysics Data System (ADS)

    Mateeva, Tsvetomila; Wolff, George; Kusznir, Nick; Wheeler, John; Manataschal, Gianreto

    2016-04-01

    Studies of hydrothermal vents in modern ocean settings suggest that methane produced by serpentinization can support methanotrophic bio-systems. Are such bio-systems locally restricted to hydrothermal vents or are more pervasive, being linked with the geology of serpentinized mantle in the subsurface? Answering this question has implications for our understanding of the global importance of hidden sub-surface bio-systems, the fate of methane and the carbon cycle. The ocean-continent transition (OCT) of magma-poor rifted continental margins, exhumed within mountain belts by continent collision, provides an opportunity to investigate this question. Initial data from the Totalp unit in the Eastern Swiss Alps, representing exhumed OCT of the Alpine Tethyan rifted continental margin, shows the presence of various hydrocarbons (Mateeva et al., in prep.). Samples from other Tethyan OCT locations, consisting of the Tasna nappe and Platta unit of the Eastern Swiss Alps and Chenaillet in the Western Alps, have also been analysed to investigate the presence or absence of methanotrophic biosystems within serpentinized exhumed mantle and associated ophicalcite and syn-rift sediments. Samples from these remnant Tethyan OCT locations are characterized by low and varied organic carbon concentrations that reflect the large lithological diversity of this area. The samples contain hydrocarbons in the form of n-alkanes mostly in the range C20 - C32, polynuclear aromatic hydrocarbons (PAHs) and various biomarkers (e.g. steranes, hopanes). A typical sample from the hydrothermal system in Platta shows the lithological characteristics of a black smoker, but with no indication of a more developed biosystem. Preliminary results from the examined Tethyan OCT locations (Tasna, Platta, Chenaillet) show evidence for the preservation of marine organic matter in the serpentinized mantle and overlying sediments, although there is no unequivocal indication that the organic matter is generated from

  14. Natural Organic Matter and the Event Horizon of Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Hertkorn, N.; Frommberger, M.; Witt, M.; Koch, B. P.; Schmitt-Kopplin, P.; Perdue, E. M.

    2009-05-01

    Soils, sediments, freshwaters and marine waters contain natural organic matter (NOM) - an exceedingly complex mixture of organic compounds that collectively exhibit a nearly continuous range of properties (size- reactivity continuum). NOM is composed mainly of carbon, hydrogen and oxygen, with minor contributions from heteroatoms such as sulphur and phosphorus. Suwannee River fulvic acid (SuwFA) is a fraction of NOM that is relatively depleted in heteroatoms. Ultrahigh resolution Fourier transform ion cyclotron (FTICR) mass spectra of SuwFA reveal several thousand molecular formulae, corresponding in turn to several hundred thousand distinct chemical environments of carbon even without accountancy of isomers. The mass difference m among adjoining C,H,O-molecules between and within clusters of nominal mass is inversely related to molecular dissimilarity: any decrease of m imposes an ever growing mandatory difference in molecular composition. Molecular formulae that are expected for likely biochemical precursor molecules are notably absent from these spectra, indicating that SuwFA is the product of diagenetic reactions that have altered the major components of biomass beyond the point of recognition. The degree of complexity of SuwFA can be brought into sharp focus through comparison with the theoretical limits of chemical complexity, as constrained and quantized by the fundamentals of chemical binding. The theoretical C,H,O-compositional space denotes the isomer-filtered complement of the entire, very vast space of molecular structures composed solely of carbon, hydrogen and oxygen. The molecular formulae within SuwFA occupy a sizable proportion of the theoretical C,H,O-compositional space. A one-hundred percent coverage of the theoretically feasible C,H,O-compositional space by SuwFA molecules is attained throughout a sizable range of mass, H/C and O/C elemental ratios. The substantial differences between (and complementarity of) the SuwFA molecular formulae that

  15. Key soil functional properties affected by soil organic matter - evidence from published literature

    NASA Astrophysics Data System (ADS)

    Murphy, Brian

    2015-07-01

    The effect of varying the amount of soil organic matter on a range of individual soil properties was investigated using a literature search of published information largely from Australia, but also included relevant information from overseas. Based on published pedotransfer functions, soil organic matter was shown to increase plant available water by 2 to 3 mm per 10 cm for each 1% increase in soil organic carbon, with the largest increases being associated with sandy soils. Aggregate stability increased with increasing soil organic carbon, with aggregate stability decreasing rapidly when soil organic carbon fell below 1.2 to 1.5 5%. Soil compactibility, friability and soil erodibility were favourably improved by increasing the levels of soil organic carbon. Nutrient cycling was a major function of soil organic matter. Substantial amounts of N, P and S become available to plants when the soil organic matter is mineralised. Soil organic matter also provides a food source for the microorganisms involved in the nutrient cycling of N, P, S and K. In soils with lower clay contents, and less active clays such as kaolinites, soil organic matter can supply a significant amount of the cation exchange capacity and buffering capacity against acidification. Soil organic matter can have a cation exchange capacity of 172 to 297 cmol(+)/kg. As the cation exchange capacity of soil organic matter varies with pH, the effectiveness of soil organic matter to contribute to cation exchange capacity below pH 5.5 is often minimal. Overall soil organic matter has the potential to affect a range of functional soil properties.

  16. The flux of organic matter through a peatland ecosystem - evidence from thermogravimetric analysis

    NASA Astrophysics Data System (ADS)

    Worrall, Fred; Moody, Catherine; Clay, Gareth

    2016-04-01

    Carbon budgets of peatlands are now common and studies have considered nitrogen, oxygen and energy budgets, but no study has considered the whole composition of the organic matter as it transfers through and into a peatland. Organic matter samples were taken from each organic matter reservoir found in and each fluvial flux from a peatland and analysed the samples by thermogravimetric analysis. The samples analysed were: aboveground, belowground, heather, mosses and sedges, litter layer, a peat core, and monthly samples of particulate and dissolved organic matter. All organic matter samples were taken from a 100% peat catchment within Moor House National Nature Reserve in the North Pennines, UK, and collected samples were compared to standards of lignin, cellulose, humic acid and plant protein. Results showed that the thermogravimetric trace of the sampled organic matter were distinctive with the DOM traces being marked out by very low thermal stability relative other organic matter types. The peat profile shows a significant trend with depth from vegetation- to lignin-like composition. When all traces are weighted according to the observed dry matter and carbon budgets for the catchment then it is possible to judge what has been lost in the transition through and into the ecosystem. By plotting this "lost" trace it possible to assess its composition which is either 97% cellulose and 3% humic acid or 92% and 8% lignin. This has important implications for what controls the organic matter balance of peatlands and it suggests that the oxidation state (OR) of peatland is less than 1.

  17. Dynamics of soil organic matter pools after agricultural abandonment

    NASA Astrophysics Data System (ADS)

    Novara, Agata; Gristina, Luciano; Rühl Rühl, Juliane; La Mantia, Tommaso; Badalucco, Luigi; Kuzyakov, Yakov; Laudicina, Vito Armando

    2014-05-01

    Changes of land use from croplands to natural vegetation usually increase Carbon (C) stocks in soil. However, the contribution of old and new C to various pools still is not clearly analyzed. We measured the δ13C signature of soil organic carbon (SOC) pools after vegetation change from vineyard (C3) to grassland (C4) under Mediterranean climate to assess the changes of old and new C in total SOC, microbial biomass (MB), dissolved organic C (DOC), and CO2 efflux from soil. Development of the perennial grass Hyparrhenia hirta (C4) on vineyard abandoned for 15 or 35 years ago increased C stocks for 13% and 16%, respectively (in the upper 15 cm). This increase was linked to the incorporation of new C in SOC and with exchange of 25% of old C by new C after 35 years. The maximal incorporation of new C was observed in MB, thus reflecting the maximal turnover and availability of this pool. The DOC was produced mainly from old C of soil organic matter (SOM), showing that under Mediterranean climate DOC will be mainly produced not from fresh litter but from old SOM sources. Decomposition of SOM during a 51 days laboratory incubation was higher in cultivated vineyard than H. hirta soils. Based on changes in δ13C values of SOM, MB, DOC and CO2 in C3 soil and in soils after 15 and 35 years of C4 plant colonization, we separated 13C fractionation in soil from changes of isotopic composition by preferential utilization of substrates with different availability. The utilization pattern in this soil under Mediterranean climate was different from that in temperate ecosystems.

  18. Vehicular emissions of organic particulate matter in Sao Paulo, Brazil

    NASA Astrophysics Data System (ADS)

    Oyama, B. S.; Andrade, M. F.; Herckes, P.; Dusek, U.; Röckmann, T.; Holzinger, R.

    2015-12-01

    Vehicular emissions have a strong impact on air pollution in big cities. Many factors affect these emissions: type of vehicle, type of fuel, cruising velocity, and brake use. This study focused on emissions of organic compounds by Light (LDV) and Heavy (HDV) duty vehicle exhaust. The study was performed in the city of Sao Paulo, Brazil, where vehicles run on different fuels: gasoline with 25 % ethanol (called gasohol), hydrated ethanol, and diesel (with 5 % of biodiesel). The vehicular emissions are an important source of pollutants and the principal contribution to fine particulate matter (smaller than 2.5 μm, PM2.5) in Sao Paulo. The experiments were performed in two tunnels: Janio Quadros (TJQ) where 99 % of the vehicles are LDV, and Rodoanel Mario Covas (TRA) where up to 30 % of the fleet was HDV. The PM2.5 samples were collected on quartz filters in May and July 2011 at TJQ and TRA, respectively, using two samplers operating in parallel. The samples were analyzed by Thermal-Desorption Proton-Transfer-Reaction Mass-Spectrometry (TD-PTR-MS), and by Thermal-Optical Transmittance (TOT). The organic aerosol (OA) desorbed at TD-PTR-MS represented around 30 % of the OA estimated by the TOT method, mainly due to the different desorption temperatures, with a maximum of 870 and 350 °C for TOT and TD-PTR-MS, respectively. Average emission factors (EF) organic aerosol (OA) and organic carbon (OC) were calculated for HDV and LDV fleet. We found that HDV emitted more OA and OC than LDV, and that OC emissions represented 36 and 43 % of total PM2.5 emissions from LDV and HDV, respectively. More than 700 ions were identified by TD-PTR-MS and the EF profiles obtained from HDV and LDV exhibited distinct features. Nitrogen-containing compounds measured in the desorbed material up to 350 °C contributed around 20 % to the EF values for both types of vehicles, possibly associated with incomplete fuel burning. Additionally, 70 % of the organic compounds measured from the aerosol

  19. Chemical composition of dissolved organic matter draining permafrost soils

    NASA Astrophysics Data System (ADS)

    Ward, Collin P.; Cory, Rose M.

    2015-10-01

    Northern circumpolar permafrost soils contain roughly twice the amount of carbon stored in the atmosphere today, but the majority of this soil organic carbon is perennially frozen. Climate warming in the arctic is thawing permafrost soils and mobilizing previously frozen dissolved organic matter (DOM) from deeper soil layers to nearby surface waters. Previous studies have reported that ancient DOM draining deeper layers of permafrost soils was more susceptible to degradation by aquatic bacteria compared to modern DOM draining the shallow active layer of permafrost soils, and have suggested that DOM chemical composition may be an important control for the lability of DOM to bacterial degradation. However, the compositional features that distinguish DOM drained from different depths in permafrost soils are poorly characterized. Thus, the objective of this study was to characterize the chemical composition of DOM drained from different depths in permafrost soils, and relate these compositional differences to its susceptibility to biological degradation. DOM was leached from the shallow organic mat and the deeper permafrost layer of soils within the Imnavait Creek watershed on the North Slope of Alaska. DOM draining both soil layers was characterized in triplicate by coupling ultra-high resolution mass spectrometry, 13C solid-state NMR, and optical spectroscopy methods with multi-variate statistical analyses. Reproducibility of replicate mass spectra was high, and compositional differences resulting from interfering species or isolation effects were significantly smaller than differences between DOM drained from each soil layer. All analyses indicated that DOM leached from the shallower organic mat contained higher molecular weight, more oxidized, and more unsaturated aromatic species compared to DOM leached from the deeper permafrost layer. Bacterial production rates and bacterial efficiencies were significantly higher for permafrost compared to organic mat DOM

  20. Electron Shuttling Capacity of Solid-Phase Organic Matter in Forest Soils

    NASA Astrophysics Data System (ADS)

    Patel, A.; Zhao, Q.; Yang, Y.

    2015-12-01

    Soil organic matter, as an electron shuttle, plays an important role in regulating the biogeochemical cycles of metals, especially the redox reactions for iron. Microorganisms can reduce soil organic matter under anaerobic conditions, and biotically-reduced soil organic matter can abiotically donate electrons to ferric oxides. Such soil organic matter-mediated electron transport can facilitate the interactions between microorganisms and insoluble terminal electron acceptors, i.e. iron minerals. Most previous studies have been focused on the electron shuttling processes through dissolved soil organic matter, and scant information is available for solid-phase soil organic matter. In this study, we aim to quantify the electron accepting capacity for solid-phase organic matter in soils collected from four different forests in the United States, including Truckee (CA), Little Valley (NV), Howland (ME) and Hart (MI). We used Shewanella oneidensisMR-1 to biotically reduce soil slurries, and then quantified the electrons transferred to solid-phase and solution-phase organic matter by reacting them with Fe(III)-nitrilotriacetic acid (Fe(III)-NTA). The generation of Fe(II) was measured by a ferrozine assay to calculate the electron accepting capacity of soil organic matter. Our preliminary results showed that the Truckee soil organic matter can accept 0.51±0.07 mM e-/mol carbon. We will measure the electron accepting capacity for four different soils and correlate them to the physicochemical properties of soils. Potential results will provide information about the electron accepting capacity of solid-phase soil organic matter and its governing factors, with broad implication on the coupled biogeochemical cycles of carbon and iron.

  1. [Retrieval of forest topsoil organic matter's spatial pattern based on LiDAR data].

    PubMed

    Li, Chao; Liu, Zhao-Gang; Yue, Shu-Feng; Li, Feng-Ri; Dong, Ling-Bo; Bi, Meng

    2012-09-01

    Forest soil is one of the main carbon pools in terrestrial ecosystem. Its organic matter content can provide basic information for estimating soil carbon storage, and also, is an important index for evaluating the function of soil carbon sink. Based on the LiDAR data and the topsoil organic matter contents in 55 permanent plots at Liangshui National Nature Reserve, Heilongjiang Province of Northeast China in August 2009, and by using partial least squares (PLS) method, this paper retrieved the forest topsoil organic matter's spatial pattern in the Reserve, extracted and screened the variables related to the distribution of the topsoil organic matter (e. g. , intensity, counts, elevation, slope, and aspect), and analyzed and defined the correlations between the screened variables and topsoil organic matter content, with the prediction model of forest soil organic matter content established and validated. In the Reserve, the forest topsoil organic matter content was significantly and positively correlated with three variables (intensity, r = 0.765; counts, r = 0.423; and elevation r = 0.475; all P<0.001). The model prediction on the topsoil organic matter content was reliable (precision = 83.3%, R2 = 0.725, RMSE = 1.955 ). In the areas of forest edge and of low canopy stands, the topsoil organic matter content was less than 100 g x kg(-1). The majority of the study area had a topsoil organic matter content of 100-150 g x kg(-1), while a few areas had the topsoil organic matter content as high as 150-318.4 g x kg(-1).

  2. Stabilization of ancient organic matter in deep buried paleosols

    NASA Astrophysics Data System (ADS)

    Marin-Spiotta, E.; Chaopricha, N. T.; Mueller, C.; Diefendorf, A. F.; Plante, A. F.; Grandy, S.; Mason, J. A.

    2012-12-01

    Buried soils representing ancient surface horizons can contain large organic carbon reservoirs that may interact with the atmosphere if exposed by erosion, road construction, or strip mining. Paleosols in long-term depositional sites provide a unique opportunity for studying the importance of different mechanisms on the persistence of organic matter (OM) over millennial time-scales. We report on the chemistry and bioavailability of OM stored in the Brady soil, a deeply buried (7 m) paleosol in loess deposits of southwestern Nebraska, USA. The Brady Soil developed 9,000-13,500 years ago during a time of warming and drying. The Brady soil represents a dark brown horizon enriched in C relative to loess immediately above and below. Spanning much of the central Great Plains, this buried soil contains large C stocks due to the thickness of its A horizon (0.5 to 1 m) and wide geographic extent. Our research provides a unique perspective on long-term OM stabilization in deep soils using multiple analytical approaches. Soils were collected from the Brady soil A horizon (at 7 m depth) and modern surface A horizons (0-15 cm) at two sites for comparison. Soils were separated by density fractionation using 1.85 g ml-1 sodium polytungstate into: free particulate organic matter (fPOM) and aggregate-occluded (oPOM) of two size classes (large: >20 μm, and small: < 20 μm). The remaining dense fraction was separated into sand, silt, and clay size fractions. The distribution and age of C among density and particle-size fractions differed between surface and Brady soils. We isolated the source of the characteristic dark coloring of the Brady soil to the oPOM-small fraction, which also contained 20% of the total organic C pool in the Brady soil. The oPOM-small fraction and the bulk soil in the middle of the Brady A horizon had 14C ages of 10,500-12,400 cal yr BP, within the time that the soil was actively forming at the land surface. Surface soils showed modern ages. Lipid analyses of

  3. Do aggregate stability and soil organic matter content increase following organic inputs?

    NASA Astrophysics Data System (ADS)

    Lehtinen, Taru; Gísladóttir, Guðrún; van Leeuwen, Jeroen P.; Bloem, Jaap; Steffens, Markus; Vala Ragnarsdóttir, Kristin

    2014-05-01

    Agriculture is facing several challenges such as loss of soil organic matter (SOM); thus, sustainable farming management practices are needed. Organic farming is growing as an alternative to conventional farming; in Iceland approximately 1% and in Austria 16% of utilized agricultural area is under organic farming practice. We analyzed the effect of different farming practices (organic, and conventional) on soil physicochemical and microbiological properties in grassland soils in Iceland and cropland soils in Austria. Organic farms differed from conventional farms by absence of chemical fertilizers and pesticide use. At these farms, we investigated soil physicochemical (e.g. soil texture, pH, CAL-extractable P and K) and microbiological properties (fungal and bacterial biomass and activity). The effects of farming practices on soil macroaggregate stability and SOM quantity, quality and distribution between different fractions were studied following a density fractionation. In Iceland, we sampled six grassland sites on Brown (BA) and Histic (HA) Andosols; two sites on extensively managed grasslands, two sites under organic and two sites under conventional farming practice. In Austria, we sampled four cropland sites on Haplic Chernozems; two sites under organic and two sites under conventional farming practice. We found significantly higher macroaggregate stability in the organic compared to the conventional grasslands in Iceland. In contrast, slightly higher macroaggregation in conventional compared to the organic farming practice was found in croplands in Austria, although the difference was not significant. Macroaggregates were positively correlated with fungal biomass in Iceland, and with Feo and fungal activity in Austria. In Austria, SOM content and nutrient status (except for lower CAL-extractable P at one site) were similar between organic and conventional farms. Our results show that the organic inputs may have enhanced macroaggregation in organic farming

  4. Effects of Natural Organic Matter on Stability, Transport and Deposition of Engineered Nano-particles in Porous Media

    EPA Science Inventory

    The interaction of nano-particles and organic substances, like natural organic matter, could have significant influence on the fate, transport and bioavailability of toxic substances. Natural organic matter (NOM) is a mixture of chemically complex polyelectrolytes with varying m...

  5. Effects of Natural Organic Matter on Stability, Transport and Deposition of Engineered Nano-particles in Porous Media

    EPA Science Inventory

    The interaction of nano-particles and organic substances, like natural organic matter, could have significant influence on the fate, transport and bioavailability of toxic substances. Natural organic matter (NOM) is a mixture of chemically complex polyelectrolytes with varying m...

  6. Photosensitized degradation of amoxicillin in natural organic matter isolate solutions.

    PubMed

    Xu, Haomin; Cooper, William J; Jung, Jinyoung; Song, Weihua

    2011-01-01

    Amoxicillin is a widely used antibiotic and has been detected in natural waters. Its environmental fate is in part determined by hydrolysis, and, direct and indirect photolysis. The hydrolysis rate in distilled water and water to which five different isolated of dissolved organic matter (DOM) was added, were evaluated. In the five different DOM solutions hydrolysis accounted for 5-18% loss of amoxicillin. Direct and indirect photolysis rates were determined using a solar simulator and it appeared that indirect photolysis was the dominant loss mechanism. Direct photolysis, in a solar simulator, accounted for 6-21% loss of amoxicillin in the simulated natural waters. The steady-state concentrations of singlet oxygen, (1)ΔO(2) (∼10(-13) M) and hydroxyl radical, •OH (∼10(-17) M) were obtained in aqueous solutions of five different dissolved organic matter samples using a solar simulator. The bimolecular reaction rate constant of (1)ΔO(2) with amoxicillin was measured in the different solutions, k(ΔO(2)) = 1.44 × 10(4) M(-1) s(-1). The sunlight mediated amoxicillin loss rate with (1)ΔO(2) (∼10(-9) s(-1)), and with •OH (∼10(-7) s(-1)), were also determined for the different samples of DOM. While (1)ΔO(2) only accounted for 0.03-0.08% of the total loss rate, the hydroxyl radical contributed 10-22%. It appears that the direct reaction of singlet and triplet excited state DOM ((3)DOM(∗)) with amoxicillin accounts for 48-74% of the loss of amoxicillin. Furthermore, the pseudo first-order photodegradation rate showed a positive correlation with the sorption of amoxicillin to DOM, which further supported the assumption that excited state DOM∗ plays a key role in the photochemical transformation of amoxicillin in natural waters. This is the first study to report the relative contribution of all five processes to the fate of amoxicillin in aqueous solution.

  7. Adsorption of natural dissolved organic matter at the oxide/water interface

    USGS Publications Warehouse

    Davis, James A.

    1982-01-01

    Natural organic matter is readily adsorbed by alumina and kaolinite in the pH range of natural waters. Adsorption occurs by complex formation between surface hydroxyls and the acidic functional groups of the organic matter. Oxides with relatively acidic surface hydroxyls, e.g. silica, do not react strongly with the organic matter. Under conditions typical for natural waters, almost complete surface coverage by adsorbed organic matter may be expected for alumina, hydrous iron oxides and the edge sites of aluminosilicates. Potentiometric titration and electrophoresis indicate that most of the acidic functional groups of the adsorbed organic matter are neutralized by protons from solution. The organic coating is expected to have a great influence on subsequent adsorption of inorganic cations and anions.

  8. Coupled Ocean-Atmosphere Loss of Refractory Marine Dissolved Organic Matter

    NASA Astrophysics Data System (ADS)

    Kieber, D. J.; Keene, W. C.; Frossard, A. A.; Long, M. S.; Russell, L. M.; Maben, J. R.; Kinsey, J. D.; Tyssebotn, I. M.; Quinn, P.; Bates, T. S.

    2013-12-01

    Marine aerosol produced in the oceans from bursting bubbles and breaking waves is number dominated by submicron aerosol that are highly enriched in marine organic matter relative to seawater. Recent studies suggest that these organic-rich, submicron aerosol have a major impact on tropospheric chemistry and climate. It has been assumed this marine-derived aerosol organic matter is of recent origin stemming from biological activity in the photic zone. However, we deployed a marine aerosol generator on a recent cruise in the Sargasso Sea with seawater collected from 2500 m and showed that the aerosol generated from this seawater was enriched with organic matter to the same level as observed in surface Sargasso seawater, implying that the marine organic matter flux from the oceans into atmospheric aerosol is partly due to marine organic matter not of recent origin. We propose that marine aerosol production and subsequent physical and photochemical atmospheric evolution is the main process whereby old, refractory organic matter is removed from the oceans, thereby closing the carbon budget in the oceans and solving a long-standing conundrum regarding the removal mechanism for this organic matter in the sea. The implications of this study for couplings in the ocean-atmosphere cycling of organic matter will be discussed.

  9. Enhancement of the natural organic matter removal from drinking water by nanofiltration.

    PubMed

    Matilainen, A; Liikanen, R; Nyström, M; Lindqvist, N; Tuhkanen, T

    2004-03-01

    Finnish surface waters are abundant in natural organic matter. Natural organic matter can be removed from drinking water in a water treatment process by coagulation and filtration. The standard treatment operations are not able to remove the smallest molar mass fraction of organic matter and the intermediate molar mass matter is only partly removed. The removal of residual natural organic matter from drinking water by nanofiltration was evalueted in this study. Three different nanofiltration membranes were compared in filtering six pre-treated surface waters. The total organic carbon content of the feed waters varied from 2.0 to 4.2 mg l(-1). Other water quality parameters measured were conductivity, alkalinity, hardness, UV-absorbance, SUVA, E2/E3 value and molecular size distribution by high-performance size-exclusion chromatography. The natural organic matter removal efficiencies of the membranes were good and varied between 100% and 49%, and between 85% and 47% according to molecular size distribution and total organic carbon measurements, respectively. Removal of different molecular size fractions varied from 100% to 56%, 100% to 54% and 88% to 19%, regarding high molar mass, intermediate molar mass and low molar mass organic matter, respectively. The Desal-5 DL membrane produced the highest natural organic matter removals.

  10. Effect of Green and White Tea Pretreatment on Remineralization of Demineralized Dentin by CPP-ACFP-An Invitro Microhardness Analysis

    PubMed Central

    Jose, Poornima; Sekar, Mahalaxmi

    2016-01-01

    Introduction Mechanical performance of dentine is of major significance for the overall function of the teeth. Remineralization of carious dentine is the ultimate goal in re-establishing the functionality of the affected tissue so as to regain and maintain the mechanical properties of dentine. Functional remineralization of the affected dentin involves stabilization of both inorganic and organic component, but Caesin Phosphopeptide Amorphous Calcium Flurophosphate (CPP-ACFP) stabilizes only inorganic content. Hence to stabilize organic content and to bring in functional remineralization the use of anticollagenolytic and antielastastic agent was considered for this study. Aim To assess and compare the remineralization of artificial carious dentin pre treated with white and green tea, before and after application of CPP-ACFP using microhardness test. Null hypothesis was that both teas did not have any effect on remineralization potential of CPP ACFP. Materials and Methods Forty specimens were subjected to artificial caries lesions and were randomly divided into 4 groups based on the application of tea extract followed by CPP-ACFP (groups A & B) and CPP-ACFP followed by tea extracts (groups C & D). All the specimens were subjected to two pH cycling regimen. The specimens were subjected to Vickers microhardness test to obtain the microhardness values. The values were statistically analysed using one-way ANOVA and multiple comparisons with Tukey’s HSD procedure. Results After the 1st and 2nd pH cycling in groups A and B, Group B showed significant increase in microhardness values (35.79± 3.12 VHN). But after the pH cycling regimen in groups C and D, microhardness values increased in 1st pH cycling (50.03± 3.64 VHN); (50.03±3.64 VHN), respectively but decreased during the 2nd pH cycling, (33.94±6.45 VHN); (33.11±6.11 VHN) respectively with the level of significance <0.05. Conclusion The results of this study rejects the hypothesis tested and showed that both the

  11. Bismuth solubility through binding by various organic compounds and naturally occurring soil organic matter.

    PubMed

    Murata, Tomoyoshi

    2010-01-01

    The present study was performed to examine the effects of soluble organic matter and pH on the solubility of Bi in relation to inference with the behavior of metallic Bi dispersed in soil and water environments using EDTA, citric acid, tartaric acid, L-cysteine, soil humic acids (HA), and dissolved organic matter (DOM) derived from the soil organic horizon. The solubility of Bi by citric acid, tartaric acid, L-cysteine, HA, and DOM showed pH dependence, while that by EDTA did not. Bi solubility by HA seemed to be related to the distribution of pKa (acid dissociation constant) values of acidic functional groups in their molecules. That is, HA extracted at pH 3.2 solubilized Bi preferentially in the acidic range, while HA extracted at pH 8.4 showed preferential solubilization at neutral and alkaline pH. This was related to the dissociation characteristics of functional groups, their binding capacity with Bi, and precipitation of Bi carbonate or hydroxides. In addition to the dissociation characteristics of functional groups, the unique structural configuration of the HA could also contribute to Bi-HA complex formation. The solubility of Bi by naturally occurring DOM derived from the soil organic horizon (Oi) and its pH dependence were different from those associated with HA and varied among tree species.

  12. The effects of organic matter-mineral interactions and organic matter chemistry on diuron sorption across a diverse range of soils.

    PubMed

    Smernik, Ronald J; Kookana, Rai S

    2015-01-01

    Sorption of non-ionic organic compounds to soil is usually expressed as the carbon-normalized partition coefficient (KOC), because it is assumed that the main factor that influences the amount sorbed is the organic carbon content of the soil. However, KOC can vary by a factor of at least ten across a range of soils. We investigated two potential causes of variation in diuron KOC - organic matter-mineral interactions and organic matter chemistry - for a diverse set of 34 soils from Sri Lanka, representing a wide range of soil types. Treatment with hydrofluoric acid (HF-treatment) was used to concentrate soil organic matter. HF-treatment increased KOC for the majority of soils (average factor 2.4). We attribute this increase to the blocking of organic matter sorption sites in the whole soils by minerals. There was no significant correlation between KOC for the whole soils and KOC for the HF-treated soils, indicating that the importance of organic matter-mineral interactions varied greatly amongst these soils. There was as much variation in KOC across the HF-treated soils as there was across the whole soils, indicating that the nature of soil organic matter is also an important contributor to KOC variability. Organic matter chemistry, determined by solid-state (13)C nuclear magnetic resonance (NMR) spectroscopy, was correlated with KOC for the HF-treated soils. In particular, KOC increased with the aromatic C content (R=0.64, p=1×10(-6)), and decreased with O-alkyl C (R=-0.32, p=0.03) and alkyl C (R=-0.41, p=0.004) content.

  13. Macroinvertebrate and organic matter export from headwater tributaries of a Central Appalachian stream

    EPA Science Inventory

    Headwater streams export organisms and other materials to their receiving streams and macroinvertebrate drift can shape colonization dynamics in downstream reaches while providing food for downstream consumers. Spring-time macroinvertebrate drift and organic matter export was me...

  14. Macroinvertebrate and organic matter export from headwater tributaries of a Central Appalachian stream

    EPA Science Inventory

    Headwater streams export organisms and other materials to their receiving streams and macroinvertebrate drift can shape colonization dynamics in downstream reaches while providing food for downstream consumers. Spring-time macroinvertebrate drift and organic matter export was me...

  15. Influence of soil organic matter composition on the partition of organic compounds

    USGS Publications Warehouse

    Rutherford, D.W.; Chiou, C.T.; Klle, D.E.

    1992-01-01

    The sorption at room temperature of benzene and carbon tetrachloride from water on three high-organic-content soils (muck, peat, and extracted peat) and on cellulose was determined in order to evaluate the effect of sorbent polarity on the solute partition coefficients. The isotherms are highly linear for both solutes on all the organic matter samples, which is consistent with a partition model. For both solutes, the extracted peat shows the greatest sorption capacity while the cellulose shows the lowest capacity; the difference correlates with the polar-to-nonpolar group ratio [(O + N)/C] of the sorbent samples. The relative increase of solute partition coefficient (Kom) with a decrease of sample polar content is similar for both solutes, and the limiting sorption capacity on a given organic matter sample is comparable between the solutes. This observation suggests that one can estimate the polarity effect of a sample of soil organic matter (SOM) on Kom of various nonpolar solutes by determining the partition coefficient of single nonpolar solute when compositional analysis of the SOM is not available. The observed dependence of Kom on sample polarity is used to account for the variation of Kom values of individual compounds on different soils that results from change in the polar group content of SOM. On the assumption that the carbon content of SOM in "ordinary soils" is 53-63%, the calculated variation of Kom is a factor of ???3. This value is in agreement with the limit of variation of most Kom data with soils of relatively high SOM contents.

  16. Sustaining effect of soil warming on organic matter decomposition

    NASA Astrophysics Data System (ADS)

    Hou, Ruixing; Ouyang, Zhu; Dorodnikov, Maxim; Wilson, Glenn; Kuzyakov, Yakov

    2015-04-01

    Global warming affects various parts of carbon (C) cycle including acceleration of soil organic matter (SOM) decomposition with strong feedback to atmospheric CO2 concentration. Despite many soil warming studies showed changes of microbial community structure, only very few were focused on sustainability of soil warming on microbial activity associated with SOM decomposition. Two alternative hypotheses: 1) acclimation because of substrate exhaustion and 2) sustaining increase of microbial activity with accelerated decomposition of recalcitrant SOM pools were never proven under long term field conditions. This is especially important in the nowadays introduced no-till crop systems leading to redistribution of organic C at the soil surface, which is much susceptible to warming effects than the rest of the profile. We incubated soil samples from a four-year warming experiment with tillage (T) and no-tillage (NT) practices under three temperatures: 15, 21, and 27 °C, and related the evolved total CO2 efflux to changes of organic C pools. Warmed soils released significantly more CO2 than the control treatment (no warming) at each incubation temperature, and the largest differences were observed under 15 °C (26% increase). The difference in CO2 efflux from NT to T increase with temperature showing high vulnerability of C stored in NT to soil warming. The Q10 value reflecting the sensitivity of SOM decomposition to warming was lower for warmed than non-warmed soil indicating better acclimation of microbes or lower C availability during long term warming. The activity of three extracellular enzymes: β-glucosidase, chitinase, sulphatase, reflecting the response of C, N and S cycles to warming, were significantly higher under warming and especially under NT compared to two other respective treatments. The CO2 released during 2 months of incubation consisted of 85% from recalcitrant SOM and the remaining 15% from microbial biomass and extractable organic C based on the

  17. Chemodiversity of dissolved organic matter in the Amazon Basin

    NASA Astrophysics Data System (ADS)

    Gonsior, Michael; Valle, Juliana; Schmitt-Kopplin, Philippe; Hertkorn, Norbert; Bastviken, David; Luek, Jenna; Harir, Mourad; Bastos, Wanderley; Enrich-Prast, Alex

    2016-07-01

    Regions in the Amazon Basin have been associated with specific biogeochemical processes, but a detailed chemical classification of the abundant and ubiquitous dissolved organic matter (DOM), beyond specific indicator compounds and bulk measurements, has not yet been established. We sampled water from different locations in the Negro, Madeira/Jamari and Tapajós River areas to characterize the molecular DOM composition and distribution. Ultrahigh-resolution Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS) combined with excitation emission matrix (EEM) fluorescence spectroscopy and parallel factor analysis (PARAFAC) revealed a large proportion of ubiquitous DOM but also unique area-specific molecular signatures. Unique to the DOM of the Rio Negro area was the large abundance of high molecular weight, diverse hydrogen-deficient and highly oxidized molecular ions deviating from known lignin or tannin compositions, indicating substantial oxidative processing of these ultimately plant-derived polyphenols indicative of these black waters. In contrast, unique signatures in the Madeira/Jamari area were defined by presumably labile sulfur- and nitrogen-containing molecules in this white water river system. Waters from the Tapajós main stem did not show any substantial unique molecular signatures relative to those present in the Rio Madeira and Rio Negro, which implied a lower organic molecular complexity in this clear water tributary, even after mixing with the main stem of the Amazon River. Beside ubiquitous DOM at average H / C and O / C elemental ratios, a distinct and significant unique DOM pool prevailed in the black, white and clear water areas that were also highly correlated with EEM-PARAFAC components and define the frameworks for primary production and other aspects of aquatic life.

  18. Organic matter and salinity modify cadmium soil (phyto)availability.

    PubMed

    Filipović, Lana; Romić, Marija; Romić, Davor; Filipović, Vilim; Ondrašek, Gabrijel

    2017-09-26

    Although Cd availability depends on its total concentration in soil, it is ultimately defined by the processes which control its mobility, transformations and soil solution speciation. Cd mobility between different soil fractions can be significantly affected by certain pedovariables such as soil organic matter (SOM; over formation of metal-organic complexes) and/or soil salinity (over formation of metal-inorganic complexes). Phytoavailable Cd fraction may be described as the proportion of the available Cd in soil which is actually accessible by roots and available for plant uptake. Therefore, in a greenhouse pot experiment Cd availability was observed in the rhizosphere of faba bean exposed to different levels of SOM, NaCl salinity (50 and 100mM) and Cd contamination (5 and 10mgkg(-1)). Cd availability in soil does not linearly follow its total concentration. Still, increasing soil Cd concentration may lead to increased Cd phytoavailability if the proportion of Cd(2+) pool in soil solution is enhanced. Reduced Cd (phyto)availability by raised SOM was found, along with increased proportion of Cd-DOC complexes in soil solution. Data suggest decreased Cd soil (phyto)availability with the application of salts. NaCl salinity affected Cd speciation in soil solution by promoting the formation of CdCln(2-n) complexes. Results possibly suggest that increased Cd mobility in soil does not result in its increased availability if soil adsorption capacity for Cd has not been exceeded. Accordingly, chloro-complex possibly operated just as a Cd carrier between different soil fractions and resulted only in transfer between solid phases and not in increased (phyto)availability. Copyright © 2017 Elsevier Inc. All rights reserved.

  19. Isotopic and structural signature of experimentally irradiated organic matter

    NASA Astrophysics Data System (ADS)

    Laurent, Boris; Roskosz, Mathieu; Remusat, Laurent; Leroux, Hugues; Vezin, Hervé; Depecker, Christophe

    2014-10-01

    The effects of electron irradiation on the structure and the D/H signature of a synthetic analogue of extraterrestrial insoluble organic matter (IOM) were studied. Polyethylene terephthalate (PET) was chosen because it contains both aliphatic and aromatic functional groups. A 900 nm-thick film was irradiated with electrons within the energy range 4-300 keV, for different run durations. Temperature influence was also tested. Irradiated residues were structurally and isotopically characterized by infrared spectroscopy (IR), electronic paramagnetic resonance (EPR), and Secondary Ion Mass Spectrometry (SIMS). With increasing energy deposition, spectroscopic results indicate (i) a gradual amorphization with chain scissions, (ii) an increase of CH2/CH3 and (iii) the formation of quinones. The EPR study shows that mono- and biradicals (organic species with one or several unpaired valence electrons) are also formed during irradiation. As these structural modifications occur, the δD (initially at -33‰ relative to SMOW) decreases first during a transient step and then stabilizes at ∼+300‰. There is a strong correlation between the changes recorded by the different methods and the electron dose. Deposited energy appears to be the key parameter to induce these modifications. In this respect a low-energy electron irradiation causes more damages than high energy ones. Based on our data and considering the current solar electron flux, the irradiation at moderate energy (1-10 keV) can produce significant D-enrichments of the IOM in a timescale compatible with the evolution of a typical protoplanetary disk.

  20. Photodegradation of dissolved organic matter in ice under solar irradiation.

    PubMed

    Xue, Shuang; Wang, Chao; Zhang, Zhaohong; Song, Youtao; Liu, Qiang

    2016-02-01

    The photodegradation behavior of dissolved organic matter (DOM) with different origins in ice under solar irradiation was investigated. Exposure to