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Sample records for orthogonal injection tof

  1. A novel ion trap that enables high duty cycle and wide m/z range on an orthogonal injection TOF mass spectrometer.

    PubMed

    Loboda, Alexander V; Chernushevich, Igor V

    2009-07-01

    Although TOF analyzers with orthogonal ion injection provide the whole spectrum without scanning, their duty cycle is low compared with scanning analyzers in single ion monitoring mode. Typical duty cycle is in the range of 5% to 30% depending on the instrument geometry and ion m/z value. We present here a novel trapping/releasing setup, which offers the duty cycle near 100% over a wide range. Operation in the mass range from m/z 120 to almost 2000 is demonstrated. Ions are trapped in a short linear ion trap at the end of the collision cell in an axial pseudopotential well created by additional rf ("AC") voltage applied to all four rods of the trap with the same amplitude and phase. The pseudopotential created by AC field is mass dependent, and by ramping down the AC voltage, ions can be released from the trap sequentially from high m/z to low, while all ions are gaining the same kinetic energy. Upon entering the TOF accelerator, ions with lower m/z catch up with heavier ions, and the AC ramp parameters can be selected to make all ions meet in the center of the TOF extraction region, resulting in sensitivity gains from 3 to 14 without loss of mass accuracy or resolution.

  2. Orthogonal ion injection apparatus and process

    DOEpatents

    Kurulugama, Ruwan T; Belov, Mikhail E

    2014-04-15

    An orthogonal ion injection apparatus and process are described in which ions are directly injected into an ion guide orthogonal to the ion guide axis through an inlet opening located on a side of the ion guide. The end of the heated capillary is placed inside the ion guide such that the ions are directly injected into DC and RF fields inside the ion guide, which efficiently confines ions inside the ion guide. Liquid droplets created by the ionization source that are carried through the capillary into the ion guide are removed from the ion guide by a strong directional gas flow through an inlet opening on the opposite side of the ion guide. Strong DC and RF fields divert ions into the ion guide. In-guide orthogonal injection yields a noise level that is a factor of 1.5 to 2 lower than conventional inline injection known in the art. Signal intensities for low m/z ions are greater compared to convention inline injection under the same processing conditions.

  3. Intraspecific variations in Conus purpurascens injected venom using LC/MALDI-TOF-MS and LC-ESI-TripleTOF-MS.

    PubMed

    Rodriguez, Alena M; Dutertre, Sebastien; Lewis, Richard J; Marí, Frank

    2015-08-01

    The venom of cone snails is composed of highly modified peptides (conopeptides) that target a variety of ion channels and receptors. The venom of these marine gastropods represents a largely untapped resource of bioactive compounds of potential pharmaceutical value. Here, we use a combination of bioanalytical techniques to uncover the extent of venom expression variability in Conus purpurascens, a fish-hunting cone snail species. The injected venom of nine specimens of C. purpurascens was separated by reversed-phase high-performance liquid chromatography (RP-HPLC), and fractions were analyzed using matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF-MS) in parallel with liquid chromatography-electrospray ionization (LC-ESI)-TripleTOF-MS to compare standard analytical protocols used in preparative bioassay-guided fractionations with a deeper peptidomic analysis. Here, we show that C. purpurascens exhibits pronounced intraspecific venom variability. RP-HPLC fractionation followed by MALDI-TOF-MS analysis of the injected venom of these nine specimens identified 463 distinct masses, with none common to all specimens. Using LC-ESI-TripleTOF-MS, the injected venom of these nine specimens yielded a total of 5517 unique masses. We also compare the injected venom of two specimens with their corresponding dissected venom. We found 2566 and 1990 unique masses for the dissected venom compared to 941 and 1959 masses in their corresponding injected venom. Of these, 742 and 1004 masses overlapped between the dissected and injected venom, respectively. The results indicate that larger conopeptide libraries can be assessed by studying multiple individuals of a given cone snail species. This expanded library of conopeptides enhances the opportunities for discovery of molecular modulators with direct relevance to human therapeutics. Graphical Abstract The venom of cone snails are extraordinarily complex mixtures of highly modified peptides. Venom

  4. The 2nd order focusing sector field type TOF mass analyzer with an orthogonal ion acceleration for LC-IMS-MS.

    PubMed

    Poteshin, S S; Zarakovsky, A I

    2017-03-15

    Original orthogonal acceleration (OA) electrostatic sector time of flight (TOF) mass analyzer is proposed those allows the second order focusing of time of flight by initial ions position. Resolving power aberration limit exceeding 80,000 FW (full width mass peak) was shown to be obtainable for mass analyzer with the total length of flight L=133.2cm, the average ion energy 3700V and the ion energy spread of 2.5% on the entrance of sector field. Copyright © 2016 Elsevier B.V. All rights reserved.

  5. Investigation of injection molding of orthogonal fluidic connector for microfluidic devices

    NASA Astrophysics Data System (ADS)

    Xu, Zheng; Cao, Dong; Zhao, Wei; Song, Man-cang; Liu, Jun-shan

    2017-02-01

    Orthogonal fluidic connections are essential for developing multilayered microfluidic devices. At present, most orthogonal connectors are realized by a horizontal channel and a vertical channel in different plates. Therefore, some extra alignment and adhesion processes for precise plate assembly are required. In this paper, the method of injection molding is proposed to make a one-body-type orthogonal connector in a single plastic plate. The connector was composed of a cantilevered tube and the other in the substrate. An injection mold was developed in which a side core-pulling mechanism and an ejection mechanism of push-pipes were combined to form the mold for an orthogonal connector. Both the type and the location of gate were optimized for the mold. The results showed that the fan gate in the middle position of the plate was the most suitable in term of both defect control and practicability. The effect of melt temperature was numerically investigated and then verified experimentally. With the optimized parameters, the relative length and the relative wall thickness of a cantilevered tube in the plastic part can reach 98.89% and 99.80%, respectively. Furthermore, using the plastic part as a cover plate, a three-layer plastic microfluidic device was conveniently fabricated for electrochemical detection.

  6. Estimating the location and size of retinal injections from orthogonal images of an intact retina.

    PubMed

    Hjorth, J J Johannes; Savier, Elise; Sterratt, David C; Reber, Michaël; Eglen, Stephen J

    2015-11-21

    To study the mapping from the retina to the brain, typically a small region of the retina is injected with a dye, which then propagates to the retina's target structures. To determine the location of the injection, usually the retina is dissected out of the eye, flattened and then imaged, causing tears and stretching of the retina. The location of the injection is then estimated from the image of the flattened retina. Here we propose a new method that avoids dissection of the retina. We have developed IntactEye, a software package that uses two orthogonal images of the intact retina to locate focal injections of a dye. The two images are taken while the retina is still inside the eye. This bypasses the dissection step, avoiding unnecessary damage to the retina, and speeds up data acquisition. By using the native spherical coordinates of the eye, we avoid distortions caused by interpreting a curved structure in a flat coordinate system. Our method compares well to the projection method and to the Retistruct package, which both use the flattened retina as a starting point. We have tested the method also on synthetic data, where the injection location is known. Our method has been designed for analysing mouse retinas, where there are no visible landmarks for discerning retinal orientation, but can also be applied to retinas from other species. IntactEye allows the user to precisely specify the location and size of a retinal injection from two orthogonal images taken of the eye. We are solving the abstract problem of locating a point on a spherical object from two orthogonal images, which might have applications outside the field of neuroscience.

  7. Inductively coupled plasma orthogonal acceleration time-of-flight mass spectrometry (ICP-oa-TOF-MS) analysis of heavy metal content in Indocalamus tesselatus samples.

    PubMed

    Qin, Yuyue; Zhang, Zhihong; Li, Lin; Chen, Chunsheng; Shun, Sha; Huang, Yinchuan

    2013-12-01

    Indocalamus tesselatus is one of the most popular packing materials in China. Heavy metals in Chinese I. tesselatus samples have received great interest because they are related to health. A simple and fast method for the determination of Pb, Cd, Mn, Ni, Cr, As, Hg, Cu and Zn, by inductively coupled plasma orthogonal acceleration time-of-flight mass spectrometry (ICP-oa-TOF-MS), following microwave closed vessel digestion of samples, was proposed. The method was validated using standard reference material (GBW 07605-Tea). Samples of I. tesselatus from five different regions of China were analysed using the proposed method. Heavy metals contents from different regions were found at different levels. Their low contents of heavy metals showed that collection areas were not polluted and all collected I. tesselatus samples could be unreservedly used as food packing materials without any health risk.

  8. The 2nd Order Focusing by Energy for TOF Sector Field Mass Analyzer with an Orthogonal Acceleration: Theory, Modeling, Experiment

    NASA Astrophysics Data System (ADS)

    Poteshin, S. S.; Chernyshev, D. M.; Sysoev, Alexey A.; Sysoev, Alexander A.

    Currently axially symmetric type of analyzer with an electrostatic sector fields (AESF) is rarely used to construct time-of-flight mass spectrometers. The main drawback, hindering the wider use of the analyzers of this type, is the lack of chromatic second-order focusing by energy. However, the configuration of AESF in combination with orthogonal accelerator (OA) allows to achieved it through compensation of energy aberrations of the analyzer in the system of orthogonal input of the ion beam. In the presented work the results of theoretical calculation, simulation and experimentally obtained data are compared. Characteristics of the analyzer with OA in a large extent depend on the parameters of the incoming ion beam. Data of modeling the 2nd stage of gas-dynamic interface, which have the greatest influence on the parameters of the ion beam, is provided.

  9. Frequency-induced polarization bistability in vertical-cavity surface-emitting lasers with orthogonal optical injection

    SciTech Connect

    Gatare, I.; Panajotov, K.; Sciamanna, M.

    2007-02-15

    We report theoretically on a pure frequency-induced polarization bistability in a vertical-cavity surface-emitting laser (VCSEL) subject to orthogonal optical injection, i.e., the master laser light polarization is orthogonal to that of the slave VCSEL. As the frequency detuning is scanned from negative to positive values and for a fixed injected power, the VCSEL exhibits two successive and possibly bistable polarization switchings. The first switching (from the slave laser polarization to the injected light polarization) exhibits a bistable region whose width is maximum for a given value of the injected power. Such a dependency of hysteresis width on the injected power is similar to that recently found experimentally by Hong et al.[Electron. Lett. 36, 2019 (2000)]. The bistability accompanying the second switching (from the injected light polarization back to the slave laser free-running polarization) exhibits, however, significantly different features related to the occurrence of optical chaos. Interestingly, the width of the bistable region can be tuned over a large range not only by modifying the injection parameters but also by modifying the device parameters, in particular the VCSEL linewidth enhancement factor.

  10. Rapid Identification and Assignation of the Active Ingredients in Fufang Banbianlian Injection Using HPLC-DAD-ESI-IT-TOF-MS.

    PubMed

    Li, Sensen; Lin, Zongtao; Jiang, Haixiu; Tong, Lingkun; Wang, Hong; Chen, Shizhong

    2016-08-01

    Fufang Banbianlian Injection (FBI) is a well-known traditional Chinese medicine formula composed of three herbal medicines. However, the systematic investigation on its chemical components has not been reported yet. In this study, a high-performance liquid chromatography combined with diode-array detector, and coupled to an electrospray ionization with ion-trap time-of-flight mass spectrometry (HPLC-DAD-ESI-IT-TOF-MS) method, was established for the identification of chemical profile in FBI. Sixty-six major constituents (14 phenolic acids, 14 iridoids, 20 flavonoids, 2 benzylideneacetone compounds, 3 phenylethanoid glycosides, 1 coumarin, 1 lignan, 3 nucleosides, 1 amino acids, 1 monosaccharides, 2 oligosaccharides, 3 alduronic acids and citric acid) were identified or tentatively characterized by comparing their retention times and MS spectra with those of standards or literature data. Finally, all constituents were further assigned in the individual herbs (InHs), although some of them were from multiple InHs. As a result, 11 compounds were from Lobelia chinensis Lour, 33 compounds were from Scutellaria barbata D. Don and 38 compounds were from Hedyotis diffusa Willd. In conclusion, the developed HPLC-DAD-ESI-IT-TOF-MS method is a rapid and efficient technique for analysis of FBI sample, and could be a valuable method for the further study on the quality control of the FBI.

  11. Determining orthogonal and similar chromatographic systems from the injection of mixtures in liquid chromatography-diode array detection and the interpretation of correlation coefficients color maps.

    PubMed

    Van Gyseghem, E; Crosiers, I; Gourvénec, S; Massart, D L; Vander Heyden, Y

    2004-02-13

    Generic orthogonal chromatographic systems might be helpful tools as potential starting points in the development of methods to separate impurities and the active substance in drugs with unknown impurity profiles. The orthogonality of 38 chromatographic systems was evaluated from weighted-average-linkage dendrograms and color maps, both based on the correlation coefficients between the retention factors on the different systems. On each chromatographic system, 68 drug substances were injected as mixtures of three or four components to increase the throughput. The (overlapping) peaks were identified and resolved with a peak purity algorithm, orthogonal projection approach (OPA). The visualization techniques applied allowed a simple evaluation of orthogonal and (groups of) similar systems.

  12. UHPLC-Q-TOF-MS-based metabolomics approach to compare the saponin compositions of Xueshuantong injection and Xuesaitong injection.

    PubMed

    Yao, Changliang; Yang, Wenzhi; Zhang, Jingxian; Qiu, Shi; Chen, Ming; Shi, Xiaojian; Pan, Huiqin; Wu, Wanying; Guo, Dean

    2017-02-01

    Various traditional Chinese medicine preparations developed from Notoginseng total saponins, including Xueshuantong injection and Xuesaitong injection, are extensively used in China to treat cardiocerebrovascular diseases. However, the difference of their saponin compositions remains unknown. An ultra high performance liquid chromatography with quadrupole time-of-flight mass spectrometry based metabolomics approach was developed to probe the saponin discrimination between Xueshuantong and Xuesaitong and the related factors by large sample analysis. A highly efficient chromatographic separation was achieved on an HSS T3 column within 20 min with the holistic metabolites information recorded in the negative MS(E) mode. A six-step data pretreatment procedure mainly based on Progenesis QI and mass defect filtering was established. Pattern recognition chemometrics was used to discover the potential saponin markers. The saponin composition of Wuzhou Xueshuantong showed distinct discrimination from the other products. Wuzhou Xueshuantong contains more abundant protopanaxatriol-type noto-R1 , Rg1 , Re, and protopanaxadiol-type Rb1 , but less Rd and other low-polarity protopanaxadiol-type ginsenosides. These differences could not directly correlate to the use of different parts of Panax notoginseng, but possibly to the different preparation techniques employed by different manufacturers. These results are beneficial to the establishment of pharmacopoeia standards and the assessment of the efficacy and adverse drug reactions for these homologous products.

  13. Experimental investigation on nonlinear dynamics of 1550 nm VCSEL simultaneously subject to orthogonal optical injection and negative optoelectronic feedback

    NASA Astrophysics Data System (ADS)

    Deng, Tao; Xia, Guang-Qiong; Chen, Jian-Jun; Tang, Xi; Lin, Xiao-Dong; Yang, Xin; Huang, Shou-Wen; Wu, Zheng-Mao

    2017-04-01

    Nonlinear dynamic characteristics of a 1550 nm vertical-cavity surface-emitting laser (1550 nm VCSEL) simultaneously subject to orthogonal optical injection and negative optoelectronic feedback are experimentally investigated. The results show that, under suitable orthogonal optical injection the VCSEL can exhibit rich nonlinear dynamic behaviors such as stable state (S), period-one (P1), period-two (P2), chaos (CO), stable injection locking (SIL) and polarization switching (PS). After further introducing negative optoelectronic feedback with a certain feedback delay time, the dynamic distribution of the orthogonal optical injection 1550 nm VCSEL is significantly affected, and some new phenomena including three-frequency quasiperiodic (Q3) state can be observed. With the increase of optoelectronic feedback strength, the S and SIL regions typically are shrank, while the quasiperiodic (QP) and CO regions are enlarged.

  14. TOF mobility measurements in pristine films of P3HT: control of hole injection and influence of film thickness

    NASA Astrophysics Data System (ADS)

    Ballantyne, Amy M.; Wilson, Joanne S.; Nelson, Jenny; Bradley, Donal D. C.; Durrant, James R.; Heeney, Martin; Duffy, Warren; McCulloch, Iain

    2006-08-01

    Time-of-flight (TOF) photocurrent measurements have been used to study charge transport in films of regioregular poly(3-hexylthiophene) (P3HT). Devices in which the P3HT film had been deposited directly onto an indium tin oxide (ITO) electrode produced high dark currents as a result of hole injection into P3HT from ITO. Photocurrent transients in such devices were disperse. It was found however, that these dark currents could be significantly reduced by inserting a dense TiO II layer between the ITO and the polymer film. The resulting devices gave non-dispersive transients with hole and electron mobilities in the range of 1 - 2 10 -4 cm2 V -1 s -1 at room temperature. The mobility values were observed to be almost independent of film thickness over the range of 350 nm to 4.3 μm. Temperature dependence studies showed a weak dependence on temperature with a low energetic disorder parameter according to analysis using the Gaussian Disorder Model (GDM) of 71 meV.

  15. Orthogonal Injection Ion Funnel Interface Providing Enhanced Performance for Selected Reaction Monitoring-Triple Quadrupole Mass Spectrometry

    DOE PAGES

    Chen, Tsung-Chi; Fillmore, Thomas L.; Prost, Spencer A.; ...

    2015-06-24

    The electrodynamic ion funnel facilitates efficient focusing and transfer of charged particles in the higher pressure regions (e.g. ion source interfaces) of mass spectrometers, and thus providing increased sensitivity. An “off-axis” ion funnel design has been developed to reduce the source contamination and interferences from, e.g. ESI droplet residue and other poorly focused neutral or charged particles with very high mass-to charge ratios. In this study a dual ion funnel interface consisting of an orthogonal higher pressure electrodynamic ion funnel (HPIF) and an ion funnel trap combined with a triple quadruple mass spectrometer was developed and characterized. An orthogonal ionmore » injection inlet and a repeller plate electrode was used to direct ions to an ion funnel HPIF at 9-10 Torr pressure. Several critical factors for the HPIF were characterized, including the effects of RF amplitude, DC gradient and operating pressure. Compared to the triple quadrupole standard interface more than 4-fold improvement in the limit of detection for the direct quantitative MS analysis of low abundance peptides was observed. Lastly, the sensitivity enhancement in liquid chromatography selected reaction monitoring (SRM) analyses of low abundance peptides spiked into a highly complex mixture was also compared with that obtained using a both commercial s-lens interface and a in-line dual ion funnel interface.« less

  16. Orthogonal Injection Ion Funnel Interface Providing Enhanced Performance for Selected Reaction Monitoring-Triple Quadrupole Mass Spectrometry

    SciTech Connect

    Chen, Tsung-Chi; Fillmore, Thomas L.; Prost, Spencer A.; Moore, Ronald J.; Ibrahim, Yehia M.; Smith, Richard D.

    2015-06-24

    The electrodynamic ion funnel facilitates efficient focusing and transfer of charged particles in the higher pressure regions (e.g. ion source interfaces) of mass spectrometers, and thus providing increased sensitivity. An “off-axis” ion funnel design has been developed to reduce the source contamination and interferences from, e.g. ESI droplet residue and other poorly focused neutral or charged particles with very high mass-to charge ratios. In this study a dual ion funnel interface consisting of an orthogonal higher pressure electrodynamic ion funnel (HPIF) and an ion funnel trap combined with a triple quadruple mass spectrometer was developed and characterized. An orthogonal ion injection inlet and a repeller plate electrode was used to direct ions to an ion funnel HPIF at 9-10 Torr pressure. Several critical factors for the HPIF were characterized, including the effects of RF amplitude, DC gradient and operating pressure. Compared to the triple quadrupole standard interface more than 4-fold improvement in the limit of detection for the direct quantitative MS analysis of low abundance peptides was observed. Lastly, the sensitivity enhancement in liquid chromatography selected reaction monitoring (SRM) analyses of low abundance peptides spiked into a highly complex mixture was also compared with that obtained using a both commercial s-lens interface and a in-line dual ion funnel interface.

  17. Stability-indicating HPLC method development and structural elucidation of novel degradation products in posaconazole injection by LC-TOF/MS, LC-MS/MS and NMR.

    PubMed

    Yang, Yidi; Zhu, Xi; Zhang, Fei; Li, Wei; Wu, Ying; Ding, Li

    2016-06-05

    Stress testing was carried out under acidic, alkaline, oxidative, thermal and photolytic conditions to evaluate the intrinsic stability of posaconazole injection. A total of four degradation products were detected and the drug was found to be susceptible to oxidative and thermal degradations. Three unknown degradants formed under oxidative stress condition were isolated by preparative HPLC and unambiguously elucidated by LC-TOF/MS, LC-MS/MS, (1)H NMR, (13)C NMR and 2D NMR techniques. Based on the spectrometric and spectroscopic information, these novel degradation products were unequivocally assigned as the N-oxides of posaconazole. Probable mechanisms for the formation of the degradants were proposed. A new and selective HPLC method was developed and validated to separate, detect and quantify all the degradants in posaconazole injection.

  18. Research on the change of chemical composition in productive process of Re Du Ning injection by HPLC/Q-TOF MS.

    PubMed

    Zhang, Shan; Li, Yan-Jing; Zhang, Chun-Xiao; Huang, Wen-Zhe; Ding, Gang; Wang, Zhen-Zhong; Bi, Yu-An; Xiao, Wei

    2016-02-01

    A high-performance liquid chromatography coupled with quadrupole time-of-flight mass spectrometry (HPLC/Q-TOF MS) was developed for the analysis of chemical composition change in the production process of Re Du Ning injection, a Chinese medicine preparation with a combination of Lonicera japonica Thunb., Gardenia jasminoides Ellis and Artemisia annua L. A total of 90 compounds from raw materials-intermediates-Re Du Ning injection were detected; among them, 55 compounds were identified or tentatively characterized, and the characteristic ions of different types of compounds were described. Based on these studies, the different types of compounds in the various process routes were analyzed. A total of 28 compounds, including seven iridoid glycosides and six monoterpenes from G. jasminoides Ellis, five iridoid glycosides, nine phenolic acids and one unknown compound from L. japonica Thunb., were transferred to Re Du Ning injection, and two unknown compounds were generated in the production process of Re Du Ning injection. The results indicated that the Chinese Medicine Pharmaceutical process control is very important. This method could provide some reference for other Chinese medicine preparations.

  19. Orthogonal projection (OP) technique applied to pattern recognition of fingerprints of the herbal medicine houttuynia cordata Thunb. and its final injection products.

    PubMed

    Zeng, Zhong-Da; Liang, Yi-Zeng; Zhang, Ting; Chau, Foo-Tim; Wang, Ya-Li

    2006-05-01

    It is a crucial issue to determine the origins of herbal medicinal materials and identify the quality grades and fakes of their final products collected from different pharmaceutical corporations. Pattern recognition technique may assist the manufacturers to achieve this purpose and effectively control the quality of their products. In this work, a widely used method in chemometrics, orthogonal projection (OP) technique, was applied to discrimination analysis and identification of fingerprints of the herbal medicine houttuynia cordata Thunb. (HCT) and its final injection products. The advantages of the OP technique are clearly shown after comparing with the conventional methods such as principal component analysis (PCA), Mahalanobis distance (MD), and similarity comparison method (SCM). Three different sources of medicinal material HCT and its final injection products from six different manufacturers were studied under 'sixfold', 'threefold' and 'threefold-bis' cross-validation procedures. The good performance of the proposed method in determination and identification of unknown samples shows it could be a powerful tool for quality control in herbal medicine production and other related research fields.

  20. Identification of schisandrin as a vascular endothelium protective component in YiQiFuMai Powder Injection using HUVECs binding and HPLC-DAD-Q-TOF-MS/MS analysis.

    PubMed

    Li, Fang; Tan, Yi-Sha; Chen, Hong-Lin; Yan, Yan; Zhai, Ke-Feng; Li, Da-Peng; Kou, Jun-Ping; Yu, Bo-Yang

    2015-09-01

    YiQiFuMai Powder Injection (YQFM) is a re-developed preparation based on the well-known traditional Chinese medicine formula Sheng-mai-san. It has been widely used for the treatment of cardiovascular disease with definite clinical efficacy in China, but its bioactive molecules remain obscure. In this study, an effective method has been employed as a tool for screening active components in YQFM, using human umbilical vein endothelial cells (HUVECs) extraction and liquid chromatography coupled with electrospray ionization quadrupole time-of-flight tandem mass spectrometry (Q-TOF MS/MS). Nine compounds, which could interact with HUVECs, were identified as ginsenosides Rb1, Rc, Rb2, Rd, 20(S)-Rg3, 20(R)-Rg3, Rk1/Rg5 and schisandrin by comparing with reference substances or literature. In vitro assays showed that schisandrin at concentrations of 10-100 μM protected HUVECs from hypoxia/reoxygenation (H/R) injury, increased cell viability, nitric oxide (NO) content and decreased lactate dehydrogenase (LDH) leakage, malonaldehyde (MDA) content and ROS generation. Moreover, schisandrin pretreatment inhibited cell apoptosis, as evidenced by inhibiting activation of caspase-3 and increasing the Bcl-2/Bax ratio. These data indicate that HUVECs biospecific extraction coupled with HPLC-ESI-Q-TOF-MS/MS analysis is a reliable method for screening potential bioactive components from traditional Chinese medicines. Meanwhile, the vascular endothelium protective property of schisandrin might be beneficial for the treatment of cardiovascular disease. Copyright © 2015 Japanese Pharmacological Society. Production and hosting by Elsevier B.V. All rights reserved.

  1. Screening anaphylactic components of MaiLuoNing injection by using rat basophilic leukemia-2H3 cell membrane chromatography coupled with HPLC-ESI-TOF-MS.

    PubMed

    Han, Shengli; Lv, Yanni; Xue, Wenjing; Cao, Jiao; Cui, Ronghua; Zhang, Tao

    2016-02-01

    MaiLuoNing injection is a traditional Chinese medicine that used clinically since the 1950s in China. However, anaphylactic reactions, through the potentiation of mast cell degranulation, have been reported. In the present study, a rat basophilic leukemia-2H3 cell membrane chromatography coupled with high-performance liquid chromatography and electrospray ionization-ion trap-time of flight-mass spectrometry method was established for screening, analyzing, and identifying the potential anaphylactic components of MaiLuoNing injection. Harpagoside, a potential degranulator of rat basophilic leukemia-2H3 cells, was retained in rat basophilic leukemia-2H3 cell membrane chromatography. We aimed to evaluate the retained components to determine which of those were capable of inducing degranulation of basophilic leukemia cells. A β-hexosaminidase assay revealed that harpagoside can induce rat basophilic leukemia-2H3 cell degranulation in a dose-dependent manner. BLBA/c mice also exhibit passive cutaneous anaphylaxis in response to harpagoside. These results indicate that rat basophilic leukemia-2H3 cell membrane chromatography coupled with high-performance liquid chromatography and electrospray ionization ion trap time-of-flight mass spectrometry is effective in screening for the anaphylactic components of MaiLuoNing injection.

  2. The optimal dose of local anaesthetic in the orthogonal two-needle technique. Extent of sensory block after the injection of 20, 30 and 40 mL of anaesthetic solution.

    PubMed

    Rucci, F S; Barbagli, R; Pippa, P; Boccaccini, A

    1997-05-01

    Ninety patients undergoing scheduled upper limb orthopaedic surgery were studied to determine the optimal anaesthetic dose using the 'orthogonal two-needle technique'. The patients were randomly assigned to one of three groups to receive one of three different volumes (20, 30 and 40 mL) (n = 30) of anaesthetic solution (a mixture of equal parts of 0.5% bupivacaine with adrenaline 1:200,000 and 2% lignocaine). A significant correlation was found between the volume injected and the anaesthetic spread for all tested areas. A better analgesic spread to all the major branches of the plexus was obtained when increased volumes of anaesthetic solution were injected. The comparisons between the 20 mL group and the other two groups are significant in all the tested areas, as well as the comparisons between 30 and 40 mL groups in the areas innervated by radial and musculocutaneous nerves. Only the area innervated by the axillary nerve showed a weaker volume-analgesia relation, confirming the elusiveness of this area to anaesthesia in the axillary approaches. The improved results observed using greater amounts of anaesthetic solution might result from a higher intrasheath pressure with disruption of sheath septa, or from a greater availability of drug for all the terminal branches of brachial plexus, or both.

  3. PHENIX Fast TOF

    SciTech Connect

    Soha, Aria; Chiu, Mickey; Mannel, Eric; Stoll, Sean; Lynch, Don; Boose, Steve; Northacker, Dave; Alfred, Marcus; Lindesay, James; Chujo, Tatsuya; Inaba, Motoi; Nonaka, Toshihiro; Sato, Wataru; Sakatani, Ikumi; Hirano, Masahiro; Choi, Ihnjea

    2014-01-15

    This is a technical scope of work (TSW) between the Fermi National Accelerator Laboratory (Fermilab) and the experimenters of PHENIX Fast TOF group who have committed to participate in beam tests to be carried out during the FY2014 Fermilab Test Beam Facility program. The goals for this test beam experiment are to verify the timing performance of the two types of time-of-flight detector prototypes.

  4. Orthogonal transform feasibility study

    NASA Technical Reports Server (NTRS)

    Robinson, G. S.

    1971-01-01

    The application of various orthogonal transformations to communication was investigated, with particular emphasis placed on speech and visual signal processing. The fundamentals of the one- and two-dimensional orthogonal transforms and their application to speech and visual signals are treated in detail.

  5. Coherent orthogonal polynomials

    SciTech Connect

    Celeghini, E.; Olmo, M.A. del

    2013-08-15

    We discuss a fundamental characteristic of orthogonal polynomials, like the existence of a Lie algebra behind them, which can be added to their other relevant aspects. At the basis of the complete framework for orthogonal polynomials we include thus–in addition to differential equations, recurrence relations, Hilbert spaces and square integrable functions–Lie algebra theory. We start here from the square integrable functions on the open connected subset of the real line whose bases are related to orthogonal polynomials. All these one-dimensional continuous spaces allow, besides the standard uncountable basis (|x〉), for an alternative countable basis (|n〉). The matrix elements that relate these two bases are essentially the orthogonal polynomials: Hermite polynomials for the line and Laguerre and Legendre polynomials for the half-line and the line interval, respectively. Differential recurrence relations of orthogonal polynomials allow us to realize that they determine an infinite-dimensional irreducible representation of a non-compact Lie algebra, whose second order Casimir C gives rise to the second order differential equation that defines the corresponding family of orthogonal polynomials. Thus, the Weyl–Heisenberg algebra h(1) with C=0 for Hermite polynomials and su(1,1) with C=−1/4 for Laguerre and Legendre polynomials are obtained. Starting from the orthogonal polynomials the Lie algebra is extended both to the whole space of the L{sup 2} functions and to the corresponding Universal Enveloping Algebra and transformation group. Generalized coherent states from each vector in the space L{sup 2} and, in particular, generalized coherent polynomials are thus obtained. -- Highlights: •Fundamental characteristic of orthogonal polynomials (OP): existence of a Lie algebra. •Differential recurrence relations of OP determine a unitary representation of a non-compact Lie group. •2nd order Casimir originates a 2nd order differential equation that defines

  6. Multiplexed Ion Mobility Spectrometry - Orthogonal Time-Of-Flight Mass Spectrometry

    SciTech Connect

    Belov, Mikhail E.; Buschbach, Michael A.; Prior, David C.; Tang, Keqi; Smith, Richard D.

    2007-03-15

    Ion mobility spectrometry (IMS) coupled to orthogonal time-of-flight mass spectrometry (TOF) has shown significant promise for the characterization of complex biological mixtures. The enormous complexity of biological samples (e.g. from proteomics) and the need for both biological and technical analysis replicates imposes major challenges for multidimensional separation platforms in regard to both sensitivity and sample throughput. A major potential attraction of the IMS-TOF MS platform is separation speeds exceeding that of conventional condensed-phase separations by orders of magnitude. Known limitations of the IMS-TOF MS platforms that presently mitigate this attraction include the need for extensive signal averaging due to factors that include significant ion losses in the IMS-TOF interface and an ion utilization efficiency of less than ~1% with continuous ion sources (e.g. ESI). We have developed a new multiplexed ESI-IMS-TOF mass spectrometer that enables lossless ion transmission through the IMS-TOF as well as a utilization efficiency of >50% for ions from the ESI source. Initial results with a mixture of peptides show a ~10-fold increase in signal-to-noise ratio with the multiplexed approach compared to a signal averaging approach, with no reduction in either IMS or TOF MS resolution.

  7. Orthogonal Regression: A Teaching Perspective

    ERIC Educational Resources Information Center

    Carr, James R.

    2012-01-01

    A well-known approach to linear least squares regression is that which involves minimizing the sum of squared orthogonal projections of data points onto the best fit line. This form of regression is known as orthogonal regression, and the linear model that it yields is known as the major axis. A similar method, reduced major axis regression, is…

  8. Orthogonal Regression: A Teaching Perspective

    ERIC Educational Resources Information Center

    Carr, James R.

    2012-01-01

    A well-known approach to linear least squares regression is that which involves minimizing the sum of squared orthogonal projections of data points onto the best fit line. This form of regression is known as orthogonal regression, and the linear model that it yields is known as the major axis. A similar method, reduced major axis regression, is…

  9. Parallel Spectral Acquisition with Orthogonal ICR Cells.

    PubMed

    Park, Sung-Gun; Anderson, Gordon A; Bruce, James E

    2017-03-01

    FT-based high performance mass analyzers yield increased resolving power and mass measurement accuracy, yet require increased duration of signal acquisition that can limit many applications. The implementation of stronger magnetic fields, multiple detection electrodes for harmonic signal detection, and an array of multiple mass analyzers arranged along the magnetic field axis have been used to decrease required acquisition time. The results presented here show that multiple ion cyclotron resonance (ICR) mass analyzers can also be implemented orthogonal to the central magnetic field axis. The orthogonal ICR cell system presented here consisting of two cells (master and slave cells) was constructed with printed circuit boards and installed within a single superconducting magnet and vacuum system. A master cell was positioned, as is normally done with ICR cells, on the central magnetic field axis and a slave cell was located off this central axis, but directly adjacent and alongside the master cell. To achieve ion transfer between cells, ions that were initially trapped in the master cell were drifted across the magnetic field into the slave cell with application of a small DC field applied perpendicularly to the magnetic field axis. A subsequent population of ions was injected and accumulated in the master cell. Simultaneous excitation of cyclotron motion of ions in both cells was carried out; ICR signals from each cell were independently amplified and recorded in parallel. Presented here are the initial results of successful parallel spectral acquisition with this orthogonal dual ICR cell array. Graphical Abstract ᅟ.

  10. Parallel Spectral Acquisition with Orthogonal ICR Cells

    NASA Astrophysics Data System (ADS)

    Park, Sung-Gun; Anderson, Gordon A.; Bruce, James E.

    2017-03-01

    FT-based high performance mass analyzers yield increased resolving power and mass measurement accuracy, yet require increased duration of signal acquisition that can limit many applications. The implementation of stronger magnetic fields, multiple detection electrodes for harmonic signal detection, and an array of multiple mass analyzers arranged along the magnetic field axis have been used to decrease required acquisition time. The results presented here show that multiple ion cyclotron resonance (ICR) mass analyzers can also be implemented orthogonal to the central magnetic field axis. The orthogonal ICR cell system presented here consisting of two cells (master and slave cells) was constructed with printed circuit boards and installed within a single superconducting magnet and vacuum system. A master cell was positioned, as is normally done with ICR cells, on the central magnetic field axis and a slave cell was located off this central axis, but directly adjacent and alongside the master cell. To achieve ion transfer between cells, ions that were initially trapped in the master cell were drifted across the magnetic field into the slave cell with application of a small DC field applied perpendicularly to the magnetic field axis. A subsequent population of ions was injected and accumulated in the master cell. Simultaneous excitation of cyclotron motion of ions in both cells was carried out; ICR signals from each cell were independently amplified and recorded in parallel. Presented here are the initial results of successful parallel spectral acquisition with this orthogonal dual ICR cell array.

  11. Parallel Spectral Acquisition with Orthogonal ICR Cells

    NASA Astrophysics Data System (ADS)

    Park, Sung-Gun; Anderson, Gordon A.; Bruce, James E.

    2017-01-01

    FT-based high performance mass analyzers yield increased resolving power and mass measurement accuracy, yet require increased duration of signal acquisition that can limit many applications. The implementation of stronger magnetic fields, multiple detection electrodes for harmonic signal detection, and an array of multiple mass analyzers arranged along the magnetic field axis have been used to decrease required acquisition time. The results presented here show that multiple ion cyclotron resonance (ICR) mass analyzers can also be implemented orthogonal to the central magnetic field axis. The orthogonal ICR cell system presented here consisting of two cells (master and slave cells) was constructed with printed circuit boards and installed within a single superconducting magnet and vacuum system. A master cell was positioned, as is normally done with ICR cells, on the central magnetic field axis and a slave cell was located off this central axis, but directly adjacent and alongside the master cell. To achieve ion transfer between cells, ions that were initially trapped in the master cell were drifted across the magnetic field into the slave cell with application of a small DC field applied perpendicularly to the magnetic field axis. A subsequent population of ions was injected and accumulated in the master cell. Simultaneous excitation of cyclotron motion of ions in both cells was carried out; ICR signals from each cell were independently amplified and recorded in parallel. Presented here are the initial results of successful parallel spectral acquisition with this orthogonal dual ICR cell array.

  12. Accelerated time-of-flight (TOF) PET image reconstruction using TOF bin subsetization and TOF weighting matrix pre-computation.

    PubMed

    Mehranian, Abolfazl; Kotasidis, Fotis; Zaidi, Habib

    2016-02-07

    Time-of-flight (TOF) positron emission tomography (PET) technology has recently regained popularity in clinical PET studies for improving image quality and lesion detectability. Using TOF information, the spatial location of annihilation events is confined to a number of image voxels along each line of response, thereby the cross-dependencies of image voxels are reduced, which in turns results in improved signal-to-noise ratio and convergence rate. In this work, we propose a novel approach to further improve the convergence of the expectation maximization (EM)-based TOF PET image reconstruction algorithm through subsetization of emission data over TOF bins as well as azimuthal bins. Given the prevalence of TOF PET, we elaborated the practical and efficient implementation of TOF PET image reconstruction through the pre-computation of TOF weighting coefficients while exploiting the same in-plane and axial symmetries used in pre-computation of geometric system matrix. In the proposed subsetization approach, TOF PET data were partitioned into a number of interleaved TOF subsets, with the aim of reducing the spatial coupling of TOF bins and therefore to improve the convergence of the standard maximum likelihood expectation maximization (MLEM) and ordered subsets EM (OSEM) algorithms. The comparison of on-the-fly and pre-computed TOF projections showed that the pre-computation of the TOF weighting coefficients can considerably reduce the computation time of TOF PET image reconstruction. The convergence rate and bias-variance performance of the proposed TOF subsetization scheme were evaluated using simulated, experimental phantom and clinical studies. Simulations demonstrated that as the number of TOF subsets is increased, the convergence rate of MLEM and OSEM algorithms is improved. It was also found that for the same computation time, the proposed subsetization gives rise to further convergence. The bias-variance analysis of the experimental NEMA phantom and a clinical

  13. "Orthogonality" in Learning and Assessment

    ERIC Educational Resources Information Center

    Leslie, David

    2014-01-01

    This chapter proposes a simple framework, "orthogonality," to help clarify what stakeholders think about learning in college, how we assess outcomes, and how clear assessment methods might help increase confidence in returns on investment.

  14. Orthogonal polynomials and deformed oscillators

    NASA Astrophysics Data System (ADS)

    Borzov, V. V.; Damaskinsky, E. V.

    2015-10-01

    In the example of the Fibonacci oscillator, we discuss the construction of oscillator-like systems associated with orthogonal polynomials. We also consider the question of the dimensions of the corresponding Lie algebras.

  15. Compact orthogonal NMR field sensor

    DOEpatents

    Gerald, II, Rex E.; Rathke, Jerome W.

    2009-02-03

    A Compact Orthogonal Field Sensor for emitting two orthogonal electro-magnetic fields in a common space. More particularly, a replacement inductor for existing NMR (Nuclear Magnetic Resonance) sensors to allow for NMR imaging. The Compact Orthogonal Field Sensor has a conductive coil and a central conductor electrically connected in series. The central conductor is at least partially surrounded by the coil. The coil and central conductor are electrically or electro-magnetically connected to a device having a means for producing or inducing a current through the coil and central conductor. The Compact Orthogonal Field Sensor can be used in NMR imaging applications to determine the position and the associated NMR spectrum of a sample within the electro-magnetic field of the central conductor.

  16. "Orthogonality" in Learning and Assessment

    ERIC Educational Resources Information Center

    Leslie, David

    2014-01-01

    This chapter proposes a simple framework, "orthogonality," to help clarify what stakeholders think about learning in college, how we assess outcomes, and how clear assessment methods might help increase confidence in returns on investment.

  17. Generations of orthogonal surface coordinates

    NASA Technical Reports Server (NTRS)

    Blottner, F. G.; Moreno, J. B.

    1980-01-01

    Two generation methods were developed for three dimensional flows where the computational domain normal to the surface is small. With this restriction the coordinate system requires orthogonality only at the body surface. The first method uses the orthogonal condition in finite-difference form to determine the surface coordinates with the metric coefficients and curvature of the coordinate lines calculated numerically. The second method obtains analytical expressions for the metric coefficients and for the curvature of the coordinate lines.

  18. Non-Orthogonal Iris Segmentation

    DTIC Science & Technology

    2005-05-09

    pixels ( eyelashes , eyelids, etc.). For example, if all three quality bounds are close in proximity, the iris pattern that was segmented...iris pattern that was segmented by the algorithm contains eyelashes and additional extraneous information. If all automatically generated “test” mask...orthogonal iris images (see Figs. 25-28). This is primarily explained by the increased presence of eyelashes in the non-orthogonal iris masks. As the angle

  19. Orthogonal-polarization multipulse sequences

    NASA Astrophysics Data System (ADS)

    Grydeland, T.; Gustavsson, B.

    2011-02-01

    It is well known that using orthogonal polarizations for subpulses in multipulse sequences can be used to reduce clutter contributions in these modes. In this paper we show that further improvements are achieved if the orthogonality is taken into account already when constructing the codes. Using orthogonal polarizations, one can use denser transmission patterns, including elementary pulses without gaps between them, patterns that have severe range ambiguities when only a single polarization is used. Furthermore, correlations are computed separately for each combination of elementary pulse polarizations. Consequently, it is possible to have longer multipulse sequences without gaps in the lag sequence, it is possible to compute the odd lags as well as the even ones, and it is permissible to have some lags multiply obtained without range ambiguity. This means that using orthogonal polarizations when creating the multipulse transmission pattern gives flexibility well beyond the single-polarization case. This flexibility can be used to design patterns suited to particular experimental requirements. Furthermore, we point out that the improvement in clutter might have a more dramatic impact than is generally realized, particularly in high-SNR situations where the improvement in speed is up to a factor of 4. Examples are given of single- and multiple-frequency patterns that are not usable if only one polarization is available. Although all incoherent scatter radars in use today, except Jicamarca, lack orthogonal polarization capabilities, designers of the next generation of radars might find the improvements described herein to be of interest.

  20. Orthogonality of spherical harmonic coefficients

    NASA Technical Reports Server (NTRS)

    Mcleod, M. G.

    1980-01-01

    Orthogonality relations are obtained for the spherical harmonic coefficients of functions defined on the surface of a sphere. Following a brief discussion of the orthogonality of Fourier series coefficients, consideration is given to the values averaged over all orientations of the coordinate system of the spherical harmonic coefficients of a function defined on the surface of a sphere that can be expressed in terms of Legendre polynomials for the special case where the function is the sum of two delta functions located at two different points on the sphere, and for the case of an essentially arbitrary function. It is noted that the orthogonality relations derived have found applications in statistical studies of the geomagnetic field.

  1. Orthogonality of spherical harmonic coefficients

    NASA Technical Reports Server (NTRS)

    Mcleod, M. G.

    1980-01-01

    Orthogonality relations are obtained for the spherical harmonic coefficients of functions defined on the surface of a sphere. Following a brief discussion of the orthogonality of Fourier series coefficients, consideration is given to the values averaged over all orientations of the coordinate system of the spherical harmonic coefficients of a function defined on the surface of a sphere that can be expressed in terms of Legendre polynomials for the special case where the function is the sum of two delta functions located at two different points on the sphere, and for the case of an essentially arbitrary function. It is noted that the orthogonality relations derived have found applications in statistical studies of the geomagnetic field.

  2. Orthogonal Mapping in Two Dimensions

    NASA Astrophysics Data System (ADS)

    Duraiswami, Ramani; Prosperetti, Andrea

    1992-02-01

    A method for the generation of orthogonal boundary-fitted curvilinear coordinates for arbitrary simply- and doubly-connected domains is developed on the basis of the theory of quasi-conformal mappings of quadrilaterals and of previous work by Ryskin and Leal. The method has useful applications in orthogonal grid generation in two-dimensional and axi-symmetric domains and in the extension of rapid elliptic solvers and spectral methods to complex geometries. A new technique for the calculation of the conformal module of quadrilaterals is also presented.

  3. Orthogonal subspaces for correlation masking

    NASA Technical Reports Server (NTRS)

    Juday, Richard D.; Fisher, Timothy E.

    1990-01-01

    A digital correlation mask that induces orthogonality among a prescribed set of reference imagery is described. In this particular implementation, the resulting correlation is undersampled and shift-variant, though if it is applied to optical correlators, those limitations are removed. A method of introducing orthogonality among the weights among the training set from which filter values are obtained is derived, so that the correlation value from a given filter is representative of the unique nature of the reference object as compared against the other objects in the training class.

  4. TOF PET offset calibration from clinical data

    NASA Astrophysics Data System (ADS)

    Werner, M. E.; Karp, J. S.

    2013-06-01

    In this paper, we present a timing calibration technique for time-of-flight positron emission tomography (TOF PET) that eliminates the need for a specialized data acquisition. By eliminating the acquisition, the process becomes fully automated, and can be performed with any clinical data set and whenever computing resources are available. It also can be applied retroactively to datasets for which a TOF offset calibration is missing or suboptimal. Since the method can use an arbitrary data set to perform a calibration prior to a TOF reconstruction, possibly of the same data set, one also can view this as reconstruction from uncalibrated data. We present a performance comparison with existing calibration techniques.

  5. A W-Geometry Ortho-TOF MS with High Resolution and Up to 100% Duty Cycle for MS/MS.

    PubMed

    Chernushevich, Igor V; Merenbloom, Samuel I; Liu, Suya; Bloomfield, Nic

    2017-07-17

    Orthogonal injection time-of-flight (orthoTOF) mass spectrometry (MS) is the most prevalent form of TOFMS, owing to its greater control over incoming ion energy, the ability to correct for aberrations in incoming ion velocity and position, and its ability to provide an entire mass spectrum within a single scan. However, the duty cycle of orthoTOFMS is low compared with scanning analyzers, which can have 100% duty cycle when measuring a single type of ion. Typical duty cycles for orthoTOFMS range from 1% to 30%, depending on instrument geometry. Generally, as instrument resolution increases, duty cycle decreases. Additionally, the greatest duty cycle is achieved for the highest m/z ion recorded in the spectrum, and decreases for all other ions as a function of m/z. In a prior publication [Loboda, A.V.; Chernushevich, I.V. J. Am. Soc. Mass Spectrom. 20, 1342-1348 (20)], a novel trapping/release method for restoring the duty cycle of a V-geometry orthoTOFMS to near 100% (referred to as "Zeno pulsing") was presented. Here, we apply that method to a W-TOF geometry analyzer with analog detection. Across a m/z range of 100-2000, sensitivity gains of ~5-20 are observed, for total ion currents approaching ~10(7) ions·s(-1). Zeno pulsing, or similar strategies for restoring duty cycle, will continue to be important as instrument resolution in orthoTOFMS is increased through the use of ion mirrors. Graphical Abstract ᅟ.

  6. A W-Geometry Ortho-TOF MS with High Resolution and Up to 100% Duty Cycle for MS/MS

    NASA Astrophysics Data System (ADS)

    Chernushevich, Igor V.; Merenbloom, Samuel I.; Liu, Suya; Bloomfield, Nic

    2017-10-01

    Orthogonal injection time-of-flight (orthoTOF) mass spectrometry (MS) is the most prevalent form of TOFMS, owing to its greater control over incoming ion energy, the ability to correct for aberrations in incoming ion velocity and position, and its ability to provide an entire mass spectrum within a single scan. However, the duty cycle of orthoTOFMS is low compared with scanning analyzers, which can have 100% duty cycle when measuring a single type of ion. Typical duty cycles for orthoTOFMS range from 1% to 30%, depending on instrument geometry. Generally, as instrument resolution increases, duty cycle decreases. Additionally, the greatest duty cycle is achieved for the highest m/ z ion recorded in the spectrum, and decreases for all other ions as a function of m/ z. In a prior publication [Loboda, A.V.; Chernushevich, I.V. J. Am. Soc. Mass Spectrom. 20, 1342-1348 (20)], a novel trapping/release method for restoring the duty cycle of a V-geometry orthoTOFMS to near 100% (referred to as "Zeno pulsing") was presented. Here, we apply that method to a W-TOF geometry analyzer with analog detection. Across a m/ z range of 100-2000, sensitivity gains of 5-20 are observed, for total ion currents approaching 107 ions·s-1. Zeno pulsing, or similar strategies for restoring duty cycle, will continue to be important as instrument resolution in orthoTOFMS is increased through the use of ion mirrors. [Figure not available: see fulltext.

  7. A W-Geometry Ortho-TOF MS with High Resolution and Up to 100% Duty Cycle for MS/MS

    NASA Astrophysics Data System (ADS)

    Chernushevich, Igor V.; Merenbloom, Samuel I.; Liu, Suya; Bloomfield, Nic

    2017-07-01

    Orthogonal injection time-of-flight (orthoTOF) mass spectrometry (MS) is the most prevalent form of TOFMS, owing to its greater control over incoming ion energy, the ability to correct for aberrations in incoming ion velocity and position, and its ability to provide an entire mass spectrum within a single scan. However, the duty cycle of orthoTOFMS is low compared with scanning analyzers, which can have 100% duty cycle when measuring a single type of ion. Typical duty cycles for orthoTOFMS range from 1% to 30%, depending on instrument geometry. Generally, as instrument resolution increases, duty cycle decreases. Additionally, the greatest duty cycle is achieved for the highest m/z ion recorded in the spectrum, and decreases for all other ions as a function of m/z. In a prior publication [Loboda, A.V.; Chernushevich, I.V. J. Am. Soc. Mass Spectrom. 20, 1342-1348 (20)], a novel trapping/release method for restoring the duty cycle of a V-geometry orthoTOFMS to near 100% (referred to as "Zeno pulsing") was presented. Here, we apply that method to a W-TOF geometry analyzer with analog detection. Across a m/z range of 100-2000, sensitivity gains of 5-20 are observed, for total ion currents approaching 107 ions·s-1. Zeno pulsing, or similar strategies for restoring duty cycle, will continue to be important as instrument resolution in orthoTOFMS is increased through the use of ion mirrors.

  8. Semiquantitative multielemental analysis of biological samples by a laser ionization orthogonal time-of-flight mass spectrometer.

    PubMed

    Chen, Lizhi; Lin, Lin; Yu, Quan; Yan, Xiaomei; Hang, Wei; He, Jian; Huang, Benli

    2009-07-01

    Semiquantitative multielemental analyses of biological samples (tea leaf standard, Laminaria japonica, and pig skin) were demonstrated with a newly developed laser ionization orthogonal time-of-flight mass spectrometer (LI-O-TOFMS). The sample was directly ablated and ionized with high irradiance after simple sample preparation. Relative sensitivity coefficients (RSC) were calculated and evaluated for sensitivity differences. Due to the employment of a collisional cooling device and the orthogonal geometry of the TOF system, high resolving power can be obtained, such that elemental peaks and interferential peaks with the same nominal mass can be distinguished. The detection limit of microg g(-1) levels can be commonly achieved for elemental determination.

  9. Orthogonality catastrophes in quantum electrodynamics

    NASA Astrophysics Data System (ADS)

    Merlin, R.

    2017-02-01

    The insertion of a small polarizable particle in an arbitrarily large optical cavity significantly alters the quantum-mechanical state of the electromagnetic field in that the photon ground state of the empty cavity and that of the cavity with the particle become mutually orthogonal and, thus, cannot be connected adiabatically in the infinite limit. The photon problem can be mapped exactly onto that of a many-body system of fermions, which is known to exhibit an orthogonality catastrophe when a finite-range local potential is introduced. We predict that the motion of polarizable objects inside a cavity as well as their addition and removal from the cavity, will generate a macroscopic, diverging number of low-energy photons. The significance of these results in regard to the quantum measurement problem and the dynamical Casimir effect are also discussed.

  10. Orthogonality preserving infinite dimensional quadratic stochastic operators

    SciTech Connect

    Akın, Hasan; Mukhamedov, Farrukh

    2015-09-18

    In the present paper, we consider a notion of orthogonal preserving nonlinear operators. We introduce π-Volterra quadratic operators finite and infinite dimensional settings. It is proved that any orthogonal preserving quadratic operator on finite dimensional simplex is π-Volterra quadratic operator. In infinite dimensional setting, we describe all π-Volterra operators in terms orthogonal preserving operators.

  11. Efficient algorithms for orthogonal packing problems

    NASA Astrophysics Data System (ADS)

    Chekanin, A. V.; Chekanin, V. A.

    2013-10-01

    The NP complete problem of the orthogonal packing of objects of arbitrary dimension is considered in the general form. A new model for representing objects in containers is proposed that ensures the fast design of an orthogonal packing. New heuristics for the placement of orthogonal packing are proposed. A single-pass heuristic algorithm and a multimethod genetic algorithm are developed that optimize an orthogonal packing solution by increasing the packing density. Numerical experiments for two- and three-dimensional orthogonal packing problems are performed.

  12. High sensitive and throughput screening of Aflatoxin using MALDI-TOF-TOF-PSD-MS/MS

    USDA-ARS?s Scientific Manuscript database

    We have achieved sensitive and efficient detection of aflatoxin B1(AFB1) through matrix-assisted laser desorption/ionization time-of-flight-time-of-flight mass spectrometry (MALDI-TOF-TOF) and post-source decay (PSD) tandem mass spectrometry (MS/MS) using an acetic acid – a-cyano-4-hydroxycinnamic a...

  13. Supramolecular Polymers with Orthogonal Functionality

    DTIC Science & Technology

    2014-12-11

    and UPy-PEB-UPy assembled in an orthogonal fashion. Additionally, the DMTA showed two transitions for the disassembly of UPy (ca. 60 °C) and Fe2+-Mebip...resulted in a statistical mixture of noncovalent interactions, whereas blends with [Fe(Mebip-PEB- Mebip)](ClO4)2 and UPy-PEB-UPy assembled in an...polymers due to the dynamic nature of noncovalent interactions (π−π, metal−ligand, and hydrogen bonding). The latter serve to assemble the monomeric

  14. Development of a linear ion trap/orthogonal-time-of-flight mass spectrometer for time-dependent observation of product ions by ultraviolet photodissociation of peptide ions.

    PubMed

    Kim, Tae-Young; Schwartz, Jae C; Reilly, James P

    2009-11-01

    A hybrid linear ion trap/orthogonal time-of-flight (TOF) mass spectrometer has been developed to observe time-dependent vacuum ultraviolet photodissociation product ions. In this apparatus, a reflectron TOF mass analyzer is orthogonally interfaced to an LTQ using rf-only octopole and dc quadrupole ion guides. Precursor ions are generated by electrospray ionization and isolated in the ion trap. Subsequently they are directed to the TOF source where photodissociation occurs and product ions are extracted for mass analysis. To detect photodissociation product ions having axially divergent trajectories, a large rectangular detector is utilized. With variation of the time between photodissociation and orthogonal extraction in the TOF source, product ions formed over a range of times after photoexcitation can be sampled. Time-dependent observation of product ions following 157 nm photodissociation of a singly charged tryptic peptide ion (NWDAGFGR) showed that prompt photofragment ions (x- and v-type ions) dominate the tandem mass spectrum up to 1 micros after the laser shot, but the intensities of low energy thermal fragment ions (y-type ions) become comparable several microseconds later. Different proton mobilization time scales were observed for arginine- and lysine-terminated tryptic peptides.

  15. Species identification within Acinetobacter calcoaceticus-baumannii complex using MALDI-TOF MS.

    PubMed

    Toh, Benjamin E W; Paterson, David L; Kamolvit, Witchuda; Zowawi, Hosam; Kvaskoff, David; Sidjabat, Hanna; Wailan, Alexander; Peleg, Anton Y; Huber, Charlotte A

    2015-11-01

    Acinetobacter baumannii, one of the more clinically relevant species in the Acinetobacter genus is well known to be multi-drug resistant and associated with bacteremia, urinary tract infection, pneumonia, wound infection and meningitis. However, it cannot be differentiated from closely related species such as Acinetobacter calcoaceticus, Acinetobacter pittii and Acinetobacter nosocomialis by most phenotypic tests and can only be differentiated by specific, time consuming genotypic tests with very limited use in clinical microbiological laboratories. As a result, these species are grouped into the A. calcoaceticus-A. baumannii (Acb) complex. Herein we investigated the mass spectra of 73 Acinetobacter spp., representing ten different species, using an AB SCIEX 5800 MALDI-TOF MS to differentiate members of the Acinetobacter genus, including the species of the Acb complex. RpoB gene sequencing, 16S rRNA sequencing, and gyrB multiplex PCR were also evaluated as orthogonal methods to identify the organisms used in this study. We found that whilst 16S rRNA and rpoB gene sequencing could not differentiate A. pittii or A. calcoaceticus, they can be differentiated using gyrB multiplex PCR and MALDI-TOF MS. All ten Acinetobacter species investigated could be differentiated by their MALDI-TOF mass spectra. Copyright © 2015 Elsevier B.V. All rights reserved.

  16. Amino acid analysis by means of MALDI TOF mass spectrometry or MALDI TOF/TOF tandem mass spectrometry.

    PubMed

    Gogichaeva, Natalia V; Alterman, Michail A

    2012-01-01

    Here, we describe two different amino acid analysis protocols based on the application of matrix-assisted laser desorption ionization time-of-flight (MALDI TOF) mass spectrometry (MS). First protocol describes a MALDI TOF MS-based method for a routine simultaneous qualitative and quantitative analysis of free amino acids and protein hydrolysates (Alterman et al. Anal Biochem 335: 184-191, 2004). Linear responses between the amino acid concentration and the peak intensity ratio of corresponding amino acid to internal standard were observed for all amino acids analyzed in the range of concentrations from 20 to 300 μM. Limit of quantitation varied from 0.03 μM for arginine to 3.7 μM for histidine and homocysteine. This method has one inherent limitation: the analysis of isomeric and isobaric amino acids. To solve this problem, a second protocol based on the use of MALDI TOF/TOF MS/MS for qualitative analysis of amino and organic acids was developed. This technique is capable of distinguishing isobaric and isomeric compounds (Gogichayeva et al. J Am Soc Mass Spectrom 18: 279-284, 2007). Both methods do not require amino acid derivatization or chromatographic separation, and the data acquisition time is decreased to several seconds for a single sample.

  17. Nonambipolarity, orthogonal conductivity, poloidal flow, and torque

    SciTech Connect

    Hulbert, G.W.; Perkins, F.W.

    1989-02-01

    Nonambipolar processes, such as neutral injection onto trapped orbits or ripple-diffusion loss of ..cap alpha..-particles, act to charge a plasma. A current j/sub r/ across magnetic surfaces must arise in the bulk plasma to maintain charge neutrality. An axisymmetric, neoclassical model of the bulk plasma shows that these currents are carried by the ions and exert a j/sub r/B/sub theta/R/c torque in the toroidal direction. A driven poloidal flow V/sub theta/ = E/sub r/'c/B must also develop. The average current density is related to the radial electric field E/sub r/' = E/sub r/ + v/sub /phi//B/sub theta//c in a frame moving with the plasma via the orthogonal conductivity = sigma/sub /perpendicular//E/sub r/', which has the value sigma/sub /perpendicular// = (1.65epsilon/sup 1/2/)(ne/sup 2/..nu../sub ii//M..cap omega../sub theta//sup 2/) in the banana regime. If an ignited plasma loses an appreciable fraction ..delta.. of its thermonuclear ..cap alpha..-particles by banana ripple diffusion, then the torque will spin the plasma to sonic rotation in a time /tau//sub s/ approx. 2/tau//sub E//..delta.., /tau//sub E/ being the energy confinement time. 10 refs., 1 fig.

  18. Numerical analysis of the orthogonal descent method

    SciTech Connect

    Shokov, V.A.; Shchepakin, M.B.

    1994-11-01

    The author of the orthogonal descent method has been testing it since 1977. The results of these tests have only strengthened the need for further analysis and development of orthogonal descent algorithms for various classes of convex programming problems. Systematic testing of orthogonal descent algorithms and comparison of test results with other nondifferentiable optimization methods was conducted at TsEMI RAN in 1991-1992 using the results.

  19. Orthogonal coding of object location.

    PubMed

    Knutsen, Per Magne; Ahissar, Ehud

    2009-02-01

    It has been argued whether internal representations are encoded using a universal ('the neural code') or multiple codes. Here, we review a series of experiments that demonstrate that tactile encoding of object location via whisking employs an orthogonal, triple-code scheme. Rats, and other rodents, actively move the whiskers back and forth to localize and identify objects. Neural recordings from primary sensory afferents, along with behavioral observations, demonstrate that vertical coordinates of contacted objects are encoded by the identity of activated afferents, horizontal coordinates by the timing of activation and radial coordinates by the intensity of activation. Because these codes are mutually independent, the three-dimensional location of an object could, in principle, be encoded by individual afferents during single whisker-object contacts. One advantage of such a same-neuron-different-codes scheme over the traditionally assumed same-code-different-neurons scheme is a reduction of code ambiguity that, in turn, simplifies decoding circuits.

  20. Pharmaceutical identifier confirmation via DART-TOF.

    PubMed

    Easter, Jacob L; Steiner, Robert R

    2014-07-01

    Pharmaceutical analysis comprises a large amount of the casework in forensic controlled substances laboratories. In order to reduce the time of analysis for pharmaceuticals, a Direct Analysis in Real Time ion source coupled with an accurate mass time-of-flight (DART-TOF) mass spectrometer was used to confirm identity. DART-TOF spectral data for pharmaceutical samples were analyzed and evaluated by comparison to standard spectra. Identical mass pharmaceuticals were differentiated using collision induced dissociation fragmentation, present/absent ions, and abundance comparison box plots; principal component analysis (PCA) and linear discriminant analysis (LDA) were used for differentiation of identical mass mixed drug spectra. Mass assignment reproducibility and robustness tests were performed on the DART-TOF spectra. Impacts on the forensic science community include a decrease in analysis time over the traditional gas chromatograph/mass spectrometry (GC/MS) confirmations, better laboratory efficiency, and simpler sample preparation. Using physical identifiers and the DART-TOF to confirm pharmaceutical identity will eliminate the use of GC/MS and effectively reduce analysis time while still complying with accepted analysis protocols. This will prove helpful in laboratories with large backlogs and will simplify the confirmation process. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

  1. Fragmentation of multiply-charged intact protein ions using MALDI TOF-TOF mass spectrometry.

    PubMed

    Liu, Zhaoyang; Schey, Kevin L

    2008-02-01

    Top down proteomics in a TOF-TOF instrument was further explored by examining the fragmentation of multiply charged precursors ions generated by matrix-assisted laser desorption ionization. Evaluation of sample preparation conditions allowed selection of solvent/matrix conditions and sample deposition methods to produce sufficiently abundant doubly and triply charged precursor ions for subsequent CID experiments. As previously reported, preferential cleavage was observed at sites C-terminal to acidic residues and N-terminal to proline residues for all ions examined. An increase in nonpreferential fragmentation as well as additional low mass product ions was observed in the spectra from multiply charged precursor ions providing increased sequence coverage. This enhanced fragmentation from multiply charged precursor ions became increasingly important with increasing protein molecular weight and facilitates protein identification using database searching algorithms. The useable mass range for MALDI TOF-TOF analysis of intact proteins has been expanded to 18.2 kDa using this approach.

  2. Structural Analysis of Triacylglycerols by Using a MALDI-TOF/TOF System with Monoisotopic Precursor Selection

    NASA Astrophysics Data System (ADS)

    Kubo, Ayumi; Satoh, Takaya; Itoh, Yoshiyuki; Hashimoto, Masahiro; Tamura, Jun; Cody, Robert B.

    2013-05-01

    A new MALDI-TOF/TOF system with monoisotopic precursor selection was applied to the analysis of triacylglycerols in an olive oil sample. Monoisotopic precursor selection made it possible to obtain product-ion mass spectra without interference from species that differed by a single double bond. Complete structure determination of all triacylglycerols, including structural isomers, was made possible by interpreting the charge-remote fragmentation resulting from high-energy collision-induced dissociation (CID) of the sodiated triacylglycerols.

  3. Rapid Detection & Identification of Bacillus Species using MALDI-TOF/TOF and Biomarker Database

    DTIC Science & Technology

    2006-06-01

    Identification of Selected Bacillus Species (excerpt from [42]) S0 0 00 two IL - ZZO al 0 > W Z 0 . 0j~ COLN SPECIESIL B. megaterium v + + + v + + - v...identification for genus (eg. Bacillus vs. Escherichia) and species ( Bacillus anthracis vs. Bacillus megaterium ), but not strains (B. anthracis Ames... Bacillus Species using MALDI-TOF/TOF and Biomarker Database A Strategic Plan Nora W.C. Chan and William E. Lee Defence R&D Canada - Suffield Zoltan Mester

  4. Orthogonal separations: Comparison of orthogonality metrics by statistical analysis.

    PubMed

    Schure, Mark R; Davis, Joe M

    2015-10-02

    Twenty orthogonality metrics (OMs) derived from convex hull, information theory, fractal dimension, correlation coefficients, nearest neighbor distances and bin-density techniques were calculated from a diverse group of 47 experimental two-dimensional (2D) chromatograms. These chromatograms comprise two datasets; one dataset is a collection of 2D chromatograms from Peter Carr's laboratory at the University of Minnesota, and the other dataset is based on pairs of one-dimensional chromatograms previously published by Martin Gilar and coworkers (Waters Corp.). The chromatograms were pooled to make a third or combined dataset. Cross-correlation results suggest that specific OMs are correlated within families of nearest neighbor methods, correlation coefficients and the information theory methods. Principal component analysis of the OMs show that none of the OMs stands out as clearly better at explaining the data variance than any another OM. Principal component analysis of individual chromatograms shows that different OMs favor certain chromatograms. The chromatograms exhibit a range of quality, as subjectively graded by nine experts experienced in 2D chromatography. The subjective (grading) evaluations were taken at two intervals per expert and demonstrated excellent consistency for each expert. Excellent agreement for both very good and very bad chromatograms was seen across the range of experts. However, evaluation uncertainty increased for chromatograms that were judged as average to mediocre. The grades were converted to numbers (percentages) for numerical computations. The percentages were correlated with OMs to establish good OMs for evaluating the quality of 2D chromatograms. Certain metrics correlate better than others. However, these results are not consistent across all chromatograms examined. Most of the nearest neighbor methods were observed to correlate poorly with the percentages. However, one method, devised by Clark and Evans, appeared to work

  5. Chemometric classification of morphologically similar Umbelliferae medicinal herbs by DART-TOF-MS fingerprint.

    PubMed

    Lee, Sang Min; Kim, Hye-Jin; Jang, Young Pyo

    2012-01-01

    It needs many years of special training to gain expertise on the organoleptic classification of botanical raw materials and, even for those experts, discrimination among Umbelliferae medicinal herbs remains an intricate challenge due to their morphological similarity. To develop a new chemometric classification method using a direct analysis in real time-time of flight-mass spectrometry (DART-TOF-MS) fingerprinting for Umbelliferae medicinal herbs and to provide a platform for its application to the discrimination of other herbal medicines. Angelica tenuissima, Angelica gigas, Angelica dahurica and Cnidium officinale were chosen for this study and ten samples of each species were purchased from various Korean markets. DART-TOF-MS was employed on powdered raw materials to obtain a chemical fingerprint of each sample and the orthogonal partial-least squares method in discriminant analysis (OPLS-DA) was used for multivariate analysis. All samples of collected species were successfully discriminated from each other according to their characteristic DART-TOF-MS fingerprint. Decursin (or decursinol angelate) and byakangelicol were identified as marker molecules for Angelica gigas and A. dahurica, respectively. Using the OPLS method for discriminant analysis, Angelica tenuissima and Cnidium officinale were clearly separated into two groups. Angelica tenuissima was characterised by the presence of ligustilide and unidentified molecular ions of m/z 239 and 283, while senkyunolide A together with signals with m/z 387 and 389 were the marker compounds for Cnidium officinale. Elaborating with chemoinformatics, DART-TOF-MS fingerprinting with chemoinformatic tools results in a powerful method for the classification of morphologically similar Umbelliferae medicinal herbs and quality control of medicinal herbal products, including the extracts of these crude drugs. Copyright © 2012 John Wiley & Sons, Ltd.

  6. Non-orthogonal subband/transform coder

    NASA Technical Reports Server (NTRS)

    Glover, Daniel R. (Inventor)

    1993-01-01

    The present invention is directed to a simplified digital subband coder/decoder. In the present invention a signal is fed into a coder. The coder uses a non-orthogonal algorithm that is simply implemented in the coder hardware. The simple non-orthogonal design is then used in the implementation of the decoder to decode the signal.

  7. Topochemical Analysis of Cell Wall Components by TOF-SIMS.

    PubMed

    Aoki, Dan; Fukushima, Kazuhiko

    2017-01-01

    Time-of-flight secondary ion mass spectrometry (TOF-SIMS) is a recently developing analytical tool and a type of imaging mass spectrometry. TOF-SIMS provides mass spectral information with a lateral resolution on the order of submicrons, with widespread applicability. Sometimes, it is described as a surface analysis method without the requirement for sample pretreatment; however, several points need to be taken into account for the complete utilization of the capabilities of TOF-SIMS. In this chapter, we introduce methods for TOF-SIMS sample treatments, as well as basic knowledge of wood samples TOF-SIMS spectral and image data analysis.

  8. Cosmology with orthogonal nilpotent superfields

    NASA Astrophysics Data System (ADS)

    Ferrara, Sergio; Kallosh, Renata; Thaler, Jesse

    2016-02-01

    We study the application of a supersymmetric model with two constrained supermultiplets to inflationary cosmology. The first superfield S is a stabilizer chiral superfield satisfying a nilpotency condition of degree 2, S2=0 . The second superfield Φ is the inflaton chiral superfield, which can be combined into a real superfield B ≡1/2 i (Φ -Φ ¯ ) . The real superfield B is orthogonal to S , S B =0 , and satisfies a nilpotency condition of degree 3, B3=0 . We show that these constraints remove from the spectrum the complex scalar sgoldstino, the real scalar inflaton partner (i.e. the "sinflaton"), and the fermionic inflatino. The corresponding supergravity model with de Sitter vacua describes a graviton, a massive gravitino, and one real scalar inflaton, with both the goldstino and inflatino being absent in unitary gauge. We also discuss relaxed superfield constraints where S2=0 and S Φ ¯ is chiral, which removes the sgoldstino and inflatino, but leaves the sinflaton in the spectrum. The cosmological model building in both of these inflatino-less models offers some advantages over existing constructions.

  9. Which are more accurate, orthogonal or non-orthogonal sonic anemometers?

    NASA Astrophysics Data System (ADS)

    Massman, W. J.; Frank, J. M.; Swiatek, E.; Zimmerman, H.; Ewers, B. E.

    2013-12-01

    Sonic anemometry is fundamental to all eddy-covariance studies of surface energy, ecosystem carbon, and water balance. Recent studies have shown the potential underestimation of the vertical wind fluctuations among the most commonly encountered anemometer models, but thus far testing has been focused on non-orthogonal sonic anemometer designs. We hypothesize that these underestimates are systematic to the non-orthogonal design and not attributable to a single manufacturer. If so, orthogonal measurements of vertical wind should be more accurate. We tested this by conducting an experiment to measure the relative consistency between vertical and horizontal wind measurements for three sonic anemometer designs: orthogonal, non-orthogonal, and quasi-orthogonal. Both the orthogonal and non-orthogonal models were from a single manufacturer (K-probe and A-probe, Applied Technologies, Inc.) while the quasi-orthogonal design featured non-orthogonal u- and v-axes but with an orthogonal w-axis (CSAT3V, Campbell Scientific, Inc.). We conducted a 12-week experiment, testing four sonic anemometers relative to a control (CSAT3, Campbell Scientific, Inc.), each week randomly selecting at least one of each model from a pool of twelve instruments (three of each model) and randomly locating the test anemometers around the control. Half-way through the week the test anemometers were re-mounted in a horizontal position. Work was done at the GLEES AmeriFlux site (southeastern Wyoming, USA) which experiences large, uni-directional wind and turbulence. Results are discussed.

  10. MAP reconstruction for Fourier rebinned TOF-PET data.

    PubMed

    Bai, Bing; Lin, Yanguang; Zhu, Wentao; Ren, Ran; Li, Quanzheng; Dahlbom, Magnus; DiFilippo, Frank; Leahy, Richard M

    2014-02-21

    Time-of-flight (TOF) information improves the signal-to-noise ratio in positron emission tomography (PET). The computation cost in processing TOF-PET sinograms is substantially higher than for nonTOF data because the data in each line of response is divided among multiple TOF bins. This additional cost has motivated research into methods for rebinning TOF data into lower dimensional representations that exploit redundancies inherent in TOF data. We have previously developed approximate Fourier methods that rebin TOF data into either three-dimensional (3D) nonTOF or 2D nonTOF formats. We refer to these methods respectively as FORET-3D and FORET-2D. Here we describe maximum a posteriori (MAP) estimators for use with FORET rebinned data. We first derive approximate expressions for the variance of the rebinned data. We then use these results to rescale the data so that the variance and mean are approximately equal allowing us to use the Poisson likelihood model for MAP reconstruction. MAP reconstruction from these rebinned data uses a system matrix in which the detector response model accounts for the effects of rebinning. Using these methods we compare the performance of FORET-2D and 3D with TOF and nonTOF reconstructions using phantom and clinical data. Our phantom results show a small loss in contrast recovery at matched noise levels using FORET compared to reconstruction from the original TOF data. Clinical examples show FORET images that are qualitatively similar to those obtained from the original TOF-PET data but with a small increase in variance at matched resolution. Reconstruction time is reduced by a factor of 5 and 30 using FORET3D+MAP and FORET2D+MAP respectively compared to 3D TOF MAP, which makes these methods attractive for clinical applications.

  11. Cherenkov TOF PET with silicon photomultipliers

    NASA Astrophysics Data System (ADS)

    Dolenec, R.; Korpar, S.; Križan, P.; Pestotnik, R.

    2015-12-01

    As previously demonstrated, an excellent timing resolution below 100 ps FWHM is possible in time-of-flight positron emission tomography (TOF PET) if the detection method is based on the principle of detecting photons of Cherenkov light, produced in a suitable material and detected by microchannel plate photomultipliers (MCP PMTs). In this work, the silicon photomultipliers (SiPMs) were tested for the first time as the photodetectors in Cherenkov TOF PET. The high photon detection efficiency (PDE) of SiPMs led to a large improvement in detection efficiency. On the other hand, the time response of currently available SiPMs is not as good as that of MCP PMTs. The SiPM dark counts introduce a new source of random coincidences in Cherenkov method, which would be overwhelming with present SiPM technology at room temperature. When the apparatus was cooled, its performance significantly improved.

  12. Astrophysics at n_TOF Facility

    NASA Astrophysics Data System (ADS)

    Tagliente, G.; Abbondanno, U.; Aerts, G.; Alvarez, H.; Alvarez-Velarde, F.; Andriamonje, S.; Andrzejewski, J.; Assimakopoulos, P.; Audouin, L.; Badurek, G.; Baumann, P.; Bečvář, F.; Belloni, F.; Berthoumieux, E.; Calviño, F.; Calviani, M.; Cano-Ott, D.; Capote, R.; Carrapiço, C.; Cennini, P.; Chepel, V.; Chiaveri, E.; Colonna, N.; Cortes, G.; Couture, A.; Cox, J.; Dahlfors, M.; David, S.; Dillman, I.; Domingo-Pardo, C.; Dridi, W.; Duran, I.; Eleftheriadis, C.; Embid-Segura, M.; Ferrant, L.; Ferrari, A.; Ferreira-Marques, R.; Fujii, K.; Furman, W.; Goncalves, I.; Gonzalez-Romero, E.; Gramegna, F.; Guerrero, C.; Gunsing, F.; Heil, M.; Herrera-Martinez, A.; Jericha, E.; Käppeler, F.; Kadi, Y.; Karadimos, D.; Karamanis, D.; Kerveno, M.; Kossionides, E.; Krtička, M.; Lamboudis, C.; Leeb, H.; Lindote, A.; Lopes, I.; Lozano, M.; Lukic, S.; Marganiec, J.; Marrone, S.; Martinez, T.; Massimi, C.; Mastinu, P.; Mengoni, A.; Milazzo, P. M.; Mosconi, M.; Neves, F.; Oberhummer, H.; O'Brien, S.; Pancin, J.; Papachristodoulou, C.; Paradela, C.; Patronis, N.; Pavlik, A.; Pavlopoulos, P.; Perrot, L.; Plag, R.; Plukis, A.; Poch, A.; Praena, J.; Pretel, C.; Quesada, J.; Reifarth, R.; Rubbia, C.; Rudolf, G.; Salgado, J.; Santos, C.; Sarchiapone, L.; Savvidis, I.; Stephan, C.; Tagliente, G.; Tain, J. L.; Tassan-Got, L.; Tavora, L.; Terlizzi, R.; Vannini, G.; Vaz, P.; Ventura, A.; Villamarin, D.; Vincente, M. C.; Vlachoudis, V.; Vlastou, R.; Voss, F.; Walter, S.; Wiescher, M.; Wisshak, K.

    2010-08-01

    Heavy elements with Z>=30 are made by neutron capture reactions during stellar He burning and presumably in supernovae. This contribution deals mainly with the slow neutron capture (s) process which is responsible for about one half of the abundances in the mass region between Fe and Bi. The slow time scale implies that the reaction path of this process involves mostly stable isotopes which can be studied in detail in laboratory experiments. The neutron time of flight (n_TOF) facility at CERN is a neutron spallation source, its white neutron energy spectrum ranges from thermal to several MeV, covering the full energy range of interest for nuclear astrophysics, in particular for measurements of the neutron capture cross section required in s-process nucleosynthesis. This contribution gives an overview on the astrophysical program made at n_TOF facility, the results and the implications will be considered.

  13. Compton scatter tomography in TOF-PET

    NASA Astrophysics Data System (ADS)

    Hemmati, Hamidreza; Kamali-Asl, Alireza; Ay, Mohammadreza; Ghafarian, Pardis

    2017-10-01

    Scatter coincidences contain hidden information about the activity distribution on the positron emission tomography (PET) imaging system. However, in conventional reconstruction, the scattered data cause the blurring of images and thus are estimated and subtracted from detected coincidences. List mode format provides a new aspect to use time of flight (TOF) and energy information of each coincidence in the reconstruction process. In this study, a novel approach is proposed to reconstruct activity distribution using the scattered data in the PET system. For each single scattering coincidence, a scattering angle can be determined by the recorded energy of the detected photons, and then possible locations of scattering can be calculated based on the scattering angle. Geometry equations show that these sites lie on two arcs in 2D mode or the surface of a prolate spheroid in 3D mode, passing through the pair of detector elements. The proposed method uses a novel and flexible technique to estimate source origin locations from the possible scattering locations, using the TOF information. Evaluations were based on a Monte-Carlo simulation of uniform and non-uniform phantoms at different resolutions of time and detector energy. The results show that although the energy uncertainties deteriorate the image spatial resolution in the proposed method, the time resolution has more impact on image quality than the energy resolution. With progress of the TOF system, the reconstruction using the scattered data can be used in a complementary manner, or to improve image quality in the next generation of PET systems.

  14. Compton scatter tomography in TOF-PET.

    PubMed

    Hemmati, Hamidreza; Kamali-Asl, Alireza; Ay, Mohammadreza; Ghafarian, Pardis

    2017-09-12

    Scatter coincidences contain hidden information about the activity distribution on the positron emission tomography (PET) imaging system. However, in conventional reconstruction, the scattered data cause the blurring of images and thus are estimated and subtracted from detected coincidences. List mode format provides a new aspect to use time of flight (TOF) and energy information of each coincidence in the reconstruction process. In this study, a novel approach is proposed to reconstruct activity distribution using the scattered data in the PET system. For each single scattering coincidence, a scattering angle can be determined by the recorded energy of the detected photons, and then possible locations of scattering can be calculated based on the scattering angle. Geometry equations show that these sites lie on two arcs in 2D mode or the surface of a prolate spheroid in 3D mode, passing through the pair of detector elements. The proposed method uses a novel and flexible technique to estimate source origin locations from the possible scattering locations, using the TOF information. Evaluations were based on a Monte-Carlo simulation of uniform and non-uniform phantoms at different resolutions of time and detector energy. The results show that although the energy uncertainties deteriorate the image spatial resolution in the proposed method, the time resolution has more impact on image quality than the energy resolution. With progress of the TOF system, the reconstruction using the scattered data can be used in a complementary manner, or to improve image quality in the next generation of PET systems.

  15. New identification of proanthocyanidins in cinnamon (Cinnamomum zeylanicum L.) using MALDI-TOF/TOF mass spectrometry.

    PubMed

    Mateos-Martín, María Luisa; Fuguet, Elisabet; Quero, Carmen; Pérez-Jiménez, Jara; Torres, Josep Lluís

    2012-01-01

    The inner bark of Ceylon cinnamon (Cinnamomum zeylanicum L.) is commonly used as a spice and has also been widely employed in the treatment and prevention of disease. The positive health effects associated with the consumption of cinnamon could in part be due to its phenolic composition; proanthocyanidins (PA) are the major polyphenolic component in commercial cinnamon. We present a thorough study of the PA profile of cinnamon obtained using matrix-assisted laser desorption/ionization tandem time-of-flight (MALDI-TOF/TOF) mass spectrometry. In addition to the advantages of MALDI-TOF as a sensitive technique for the analysis of high-molecular-weight compounds, the tandem arrangement allows the identification of the compounds through their fragmentation patterns from MS/MS experiments. This is the first time that this technique has been used to analyze polymeric PA. The results show that cinnamon PA are more complex than was previously thought. We show here for the first time that they contain (epi)gallocatechin and (epi)catechingallate units. As gallates (galloyl moieties) and the pyrogallol group in gallocatechins have been related to the biological activity of grape and tea polyphenols, the presence of these substructures may explain some of the properties of cinnamon extracts. MALDI-TOF/TOF reveals that cinnamon bark PA include combinations of (epi)catechin, (epi)catechingallate, (epi)gallocatechin, and (epi)afzelechin, which results in a highly heterogeneous mixture of procyanidins, prodelphinidins, and propelargonidins.

  16. [Orthogonal Vector Projection Algorithm for Spectral Unmixing].

    PubMed

    Song, Mei-ping; Xu, Xing-wei; Chang, Chein-I; An, Ju-bai; Yao, Li

    2015-12-01

    Spectrum unmixing is an important part of hyperspectral technologies, which is essential for material quantity analysis in hyperspectral imagery. Most linear unmixing algorithms require computations of matrix multiplication and matrix inversion or matrix determination. These are difficult for programming, especially hard for realization on hardware. At the same time, the computation costs of the algorithms increase significantly as the number of endmembers grows. Here, based on the traditional algorithm Orthogonal Subspace Projection, a new method called. Orthogonal Vector Projection is prompted using orthogonal principle. It simplifies this process by avoiding matrix multiplication and inversion. It firstly computes the final orthogonal vector via Gram-Schmidt process for each endmember spectrum. And then, these orthogonal vectors are used as projection vector for the pixel signature. The unconstrained abundance can be obtained directly by projecting the signature to the projection vectors, and computing the ratio of projected vector length and orthogonal vector length. Compared to the Orthogonal Subspace Projection and Least Squares Error algorithms, this method does not need matrix inversion, which is much computation costing and hard to implement on hardware. It just completes the orthogonalization process by repeated vector operations, easy for application on both parallel computation and hardware. The reasonability of the algorithm is proved by its relationship with Orthogonal Sub-space Projection and Least Squares Error algorithms. And its computational complexity is also compared with the other two algorithms', which is the lowest one. At last, the experimental results on synthetic image and real image are also provided, giving another evidence for effectiveness of the method.

  17. On orthogonality preserving quadratic stochastic operators

    SciTech Connect

    Mukhamedov, Farrukh; Taha, Muhammad Hafizuddin Mohd

    2015-05-15

    A quadratic stochastic operator (in short QSO) is usually used to present the time evolution of differing species in biology. Some quadratic stochastic operators have been studied by Lotka and Volterra. In the present paper, we first give a simple characterization of Volterra QSO in terms of absolutely continuity of discrete measures. Further, we introduce a notion of orthogonal preserving QSO, and describe such kind of operators defined on two dimensional simplex. It turns out that orthogonal preserving QSOs are permutations of Volterra QSO. The associativity of genetic algebras generated by orthogonal preserving QSO is studied too.

  18. Etanercept Injection

    MedlinePlus

    ... injection comes as a solution (liquid) in a prefilled syringe and an automatic injection device, and as a ... etanercept injection.If your medication comes in a prefilled syringe or automatic injection device, use each syringe or ...

  19. Gaussian quadrature for multiple orthogonal polynomials

    NASA Astrophysics Data System (ADS)

    Coussement, Jonathan; van Assche, Walter

    2005-06-01

    We study multiple orthogonal polynomials of type I and type II, which have orthogonality conditions with respect to r measures. These polynomials are connected by their recurrence relation of order r+1. First we show a relation with the eigenvalue problem of a banded lower Hessenberg matrix Ln, containing the recurrence coefficients. As a consequence, we easily find that the multiple orthogonal polynomials of type I and type II satisfy a generalized Christoffel-Darboux identity. Furthermore, we explain the notion of multiple Gaussian quadrature (for proper multi-indices), which is an extension of the theory of Gaussian quadrature for orthogonal polynomials and was introduced by Borges. In particular, we show that the quadrature points and quadrature weights can be expressed in terms of the eigenvalue problem of Ln.

  20. Orthogonal Chirp-Based Ultrasonic Positioning

    PubMed Central

    Khyam, Mohammad Omar; Ge, Shuzhi Sam; Li, Xinde; Pickering, Mark

    2017-01-01

    This paper presents a chirp based ultrasonic positioning system (UPS) using orthogonal chirp waveforms. In the proposed method, multiple transmitters can simultaneously transmit chirp signals, as a result, it can efficiently utilize the entire available frequency spectrum. The fundamental idea behind the proposed multiple access scheme is to utilize the oversampling methodology of orthogonal frequency-division multiplexing (OFDM) modulation and orthogonality of the discrete frequency components of a chirp waveform. In addition, the proposed orthogonal chirp waveforms also have all the advantages of a classical chirp waveform. Firstly, the performance of the waveforms is investigated through correlation analysis and then, in an indoor environment, evaluated through simulations and experiments for ultrasonic (US) positioning. For an operational range of approximately 1000 mm, the positioning root-mean-square-errors (RMSEs) &90% error were 4.54 mm and 6.68 mm respectively. PMID:28448454

  1. Analysis of Combustion Chamber Deposits by ESI-TOF-MS and MALDI-TOF-MS

    SciTech Connect

    Reynolds, J G; Shields, S J; Roos, J W

    2001-06-14

    Combustion chamber deposits (CCDs) in internal combustion engines have been studied by various techniques to understand the relationship of performance degradation with deposit quantity and structure. XPS, XAS, NMR, and elemental analysis have offered insight into the bulk structure of C, H, N, O and metal components [1]. MS has offered some information about compound structure, but results are limited due to the insolubility and complexity of the materials. Recent advances in MS have opened new possibilities for analysis of CCDs. Here we report initial findings on the carbon structure of these deposits determined by ESI-TOF-MS and MADLI-TOF-MS.

  2. Analytic TOF PET reconstruction algorithm within DIRECT data partitioning framework

    PubMed Central

    Matej, Samuel; Daube-Witherspoon, Margaret E.; Karp, Joel S.

    2016-01-01

    Iterative reconstruction algorithms are routinely used for clinical practice; however, analytic algorithms are relevant candidates for quantitative research studies due to their linear behavior. While iterative algorithms also benefit from the inclusion of accurate data and noise models the widespread use of TOF scanners with less sensitivity to noise and data imperfections make analytic algorithms even more promising. In our previous work we have developed a novel iterative reconstruction approach (Direct Image Reconstruction for TOF) providing convenient TOF data partitioning framework and leading to very efficient reconstructions. In this work we have expanded DIRECT to include an analytic TOF algorithm with confidence weighting incorporating models of both TOF and spatial resolution kernels. Feasibility studies using simulated and measured data demonstrate that analytic-DIRECT with appropriate resolution and regularization filters is able to provide matched bias vs. variance performance to iterative TOF reconstruction with a matched resolution model. PMID:27032968

  3. Analytic TOF PET reconstruction algorithm within DIRECT data partitioning framework.

    PubMed

    Matej, Samuel; Daube-Witherspoon, Margaret E; Karp, Joel S

    2016-05-07

    Iterative reconstruction algorithms are routinely used for clinical practice; however, analytic algorithms are relevant candidates for quantitative research studies due to their linear behavior. While iterative algorithms also benefit from the inclusion of accurate data and noise models the widespread use of time-of-flight (TOF) scanners with less sensitivity to noise and data imperfections make analytic algorithms even more promising. In our previous work we have developed a novel iterative reconstruction approach (DIRECT: direct image reconstruction for TOF) providing convenient TOF data partitioning framework and leading to very efficient reconstructions. In this work we have expanded DIRECT to include an analytic TOF algorithm with confidence weighting incorporating models of both TOF and spatial resolution kernels. Feasibility studies using simulated and measured data demonstrate that analytic-DIRECT with appropriate resolution and regularization filters is able to provide matched bias versus variance performance to iterative TOF reconstruction with a matched resolution model.

  4. Analytic TOF PET reconstruction algorithm within DIRECT data partitioning framework

    NASA Astrophysics Data System (ADS)

    Matej, Samuel; Daube-Witherspoon, Margaret E.; Karp, Joel S.

    2016-05-01

    Iterative reconstruction algorithms are routinely used for clinical practice; however, analytic algorithms are relevant candidates for quantitative research studies due to their linear behavior. While iterative algorithms also benefit from the inclusion of accurate data and noise models the widespread use of time-of-flight (TOF) scanners with less sensitivity to noise and data imperfections make analytic algorithms even more promising. In our previous work we have developed a novel iterative reconstruction approach (DIRECT: direct image reconstruction for TOF) providing convenient TOF data partitioning framework and leading to very efficient reconstructions. In this work we have expanded DIRECT to include an analytic TOF algorithm with confidence weighting incorporating models of both TOF and spatial resolution kernels. Feasibility studies using simulated and measured data demonstrate that analytic-DIRECT with appropriate resolution and regularization filters is able to provide matched bias versus variance performance to iterative TOF reconstruction with a matched resolution model.

  5. Quantitative differences in [(18)F] NaF PET/CT: TOF versus non-TOF measurements.

    PubMed

    Oldan, Jorge D; Turkington, Timothy G; Choudhury, Kingshuk; Chin, Bennett B

    2015-01-01

    [(18)F] sodium fluoride (NaF) PET/CT is a current, clinically relevant method to assess bone metastases. Time-of-flight (TOF) PET provides better statistical data quality, which can improve either lower image noise or improve resolution, or both, depending on the image reconstruction. Improved resolution can improve quantitative measurements of standardized uptake value (SUV) in small structures. These quantitative differences may be important in both clinical interpretation and multicenter clinical trials where quantification is integral to assessing response to therapy. The purpose of this study is to determine if and by how much SUV quantitatively differs between TOF and conventional non-TOF reconstructions in [(18)F] NaF PET/CT. SUV measurements (mean and maximum) were compared in TOF and non-TOF [(18)F] NaF PET-CT reconstructions for 47 prostate cancer patients in normal regions including: soft tissue (n=282 total regions; liver, aorta, posterior abdominal fat, bladder, brain, and paraspinal muscles), and osseous structures (n=188; T12 vertebral body, femoral diaphyseal cortex, femoral head, and lateral rib). Comparisons were also made for benign degenerative changes (n=281) and metastases (n=159). TOF and non-TOF SUVs were assessed with paired t-test and linear correlations. Normal soft tissue showed lower SUVmean for TOF compared to non-TOF in liver, brain, and adipose. All osseous structures showed higher SUVmean for TOF compared to non-TOF including normal regions, degenerative joint disease, and metastases. For all metastatic lesions, the average SUVmean increased by 2.5%, and in degenerative joint disease it increased by 3.5% on TOF reconstructions. Smaller lesion size was a significant factor influencing this increase in SUVmean. TOF SUVmean values are higher in osseous structures and lower in background soft tissue structures. While these differences are statistically significant, the magnitudes of these changes are relatively modest. Smaller osseous

  6. Reflectron MALDI TOF and MALDI TOF/TOF mass spectrometry reveal novel structural details of native lipooligosaccharides.

    PubMed

    Sturiale, Luisa; Palmigiano, Angelo; Silipo, Alba; Knirel, Yuriy A; Anisimov, Andrei P; Lanzetta, Rosa; Parrilli, Michelangelo; Molinaro, Antonio; Garozzo, Domenico

    2011-11-01

    Lipooligosaccharides (LOS) are powerful Gram-negative glycolipids that evade the immune system and invade host animal and vegetal cells. The structural elucidation of LOS is pivotal to understanding the mechanisms of infection at the molecular level. The amphiphilic nature of LOS has been the main obstacle for structural analysis by matrix-assisted laser desorption/ionization (MALDI) mass spectrometry (MS). Our approach has resolved this important issue and has permitted us to obtain reflectron MALDI mass spectra of LOS to reveal the fine chemical structure with minimal structural variations. The high-quality MALDI mass spectra show LOS species characteristic of molecular ions and defined fragments due to decay in the ion source. The in-source decay yields B-type ions, which correspond to core oligosaccharide(s), and Y-type ions, which are related to lipid A unit(s). MALDI tandem time-of-flight (TOF/TOF) MS of lipid A allowed for the elucidation of its structure directly from purified intact LOS without the need for any chemical manipulations. These findings constitute a significant advancement in the analysis of such an important biomolecule by MALDI MS. Copyright © 2011 John Wiley & Sons, Ltd.

  7. PTR-QMS versus PTR-TOF comparison in a region with oil and natural gas extraction industry in the Uintah Basin in 2013

    NASA Astrophysics Data System (ADS)

    Warneke, C.; Veres, P.; Murphy, S. M.; Soltis, J.; Field, R. A.; Graus, M. G.; Koss, A.; Li, S.-M.; Li, R.; Yuan, B.; Roberts, J. M.; de Gouw, J. A.

    2015-01-01

    Here we compare volatile organic compound (VOC) measurements using a standard proton-transfer-reaction quadrupole mass spectrometer (PTR-QMS) with a new proton-transfer-reaction time of flight mass spectrometer (PTR-TOF) during the Uintah Basin Winter Ozone Study 2013 (UBWOS2013) field experiment in an oil and gas field in the Uintah Basin, Utah. The PTR-QMS uses a quadrupole, which is a mass filter that lets one mass to charge ratio pass at a time, whereas the PTR-TOF uses a time of flight mass spectrometer, which takes full mass spectra with typical 0.1 s-1 min integrated acquisition times. The sensitivity of the PTR-QMS in units of counts per ppbv (parts per billion by volume) is about a factor of 10-35 times larger than the PTR-TOF, when only one VOC is measured. The sensitivity of the PTR-TOF is mass dependent because of the mass discrimination caused by the sampling duty cycle in the orthogonal-acceleration region of the TOF. For example, the PTR-QMS on mass 33 (methanol) is 35 times more sensitive than the PTR-TOF and for masses above 120 amu less than 10 times more. If more than 10-35 compounds are measured with PTR-QMS, the sampling time per ion decreases and the PTR-TOF has higher signals per unit measuring time for most masses. For UBWOS2013 the PTR-QMS measured 34 masses in 37 s and on that timescale the PTR-TOF is more sensitive for all masses. The high mass resolution of the TOF allows for the measurements of compounds that cannot be separately detected with the PTR-QMS, such as oxidation products from alkanes and cycloalkanes emitted by oil and gas extraction. PTR-TOF masses do not have to be preselected, allowing for identification of unanticipated compounds. The measured mixing ratios of the two instruments agreed very well (R2 ≥ 0.92 and within 20%) for all compounds and masses monitored with the PTR-QMS.

  8. Clinical evaluation of TOF versus non-TOF on PET artifacts in simultaneous PET/MR: a dual centre experience.

    PubMed

    Ter Voert, Edwin E G W; Veit-Haibach, Patrick; Ahn, Sangtae; Wiesinger, Florian; Khalighi, M Mehdi; Levin, Craig S; Iagaru, Andrei H; Zaharchuk, Greg; Huellner, Martin; Delso, Gaspar

    2017-07-01

    Our objective was to determine clinically the value of time-of-flight (TOF) information in reducing PET artifacts and improving PET image quality and accuracy in simultaneous TOF PET/MR scanning. A total 65 patients who underwent a comparative scan in a simultaneous TOF PET/MR scanner were included. TOF and non-TOF PET images were reconstructed, clinically examined, compared and scored. PET imaging artifacts were categorized as large or small implant-related artifacts, as dental implant-related artifacts, and as implant-unrelated artifacts. Differences in image quality, especially those related to (implant) artifacts, were assessed using a scale ranging from 0 (no artifact) to 4 (severe artifact). A total of 87 image artifacts were found and evaluated. Four patients had large and eight patients small implant-related artifacts, 27 patients had dental implants/fillings, and 48 patients had implant-unrelated artifacts. The average score was 1.14 ± 0.82 for non-TOF PET images and 0.53 ± 0.66 for TOF images (p < 0.01) indicating that artifacts were less noticeable when TOF information was included. Our study indicates that PET image artifacts are significantly mitigated with integration of TOF information in simultaneous PET/MR. The impact is predominantly seen in patients with significant artifacts due to metal implants.

  9. TOF-SIMS analysis of polymers

    NASA Astrophysics Data System (ADS)

    Wien, Karl

    1997-08-01

    When solid polymers are irradiated with heavy ions, atomic and molecular particles are ejected from the uppermost layers of the surface. A technique to determine the mass spectrum of the charged fraction of these particles is time-of-flight secondary-ion-mass spectrometry, TOF-SIMS. The present article describes, how the mass spectra measured with polymers are generally structured and under which conditions the various types of secondary ions like cationized oligomers, fragment ions and "fingerprint" ions are observable. The mechanisms leading to formation and ejection of the ions are not well understood. At bombarding energies of 10 keV, they are mainly based on atomic collision processes, at 100 MeV on the electronic excitation of the solid in the vicinity of the nuclear track. Processes, which are capable to desorb large organic molecules, seem not to work with oligomers of similar mass. Mass spectrometry of "real world" polymers, i.e. thick samples, depends mostly on the low-mass fingerprint spectrum, which can be produced by keV MeV SIMS. Modern TOF-SIMS instruments are equipped with a pulsed ion gun and an energy focussing ion mirror. They provide high mass resolution ( {m}/{Δm} ⋍ 10000 ) and high transmission (20-50%). Examples of applications are given, like the determination of mean molecular weights or investigations of radiation induced modifications of polymers.

  10. Applications of TOF neutron diffraction in archaeometry

    NASA Astrophysics Data System (ADS)

    Kockelmann, W.; Siano, S.; Bartoli, L.; Visser, D.; Hallebeek, P.; Traum, R.; Linke, R.; Schreiner, M.; Kirfel, A.

    2006-05-01

    Neutron radiation meets the demand for a versatile diagnostic probe for collecting information from the interior of large, undisturbed museum objects or archaeological findings. Neutrons penetrate through coatings and corrosion layers deep into centimetre-thick materials, a property that makes them ideal for non-destructive examination of objects for which sampling is impractical or unacceptable. A particular attraction of neutron techniques for archaeologists and conservation scientists is the prospect of locating hidden materials and structures inside objects. Time-of-flight (TOF) neutron diffraction allows for the examination of mineral and metal phase contents, crystal structures, grain orientations, and microstructures as well as micro- and macro strains. A promising application is texture analysis which may provide clues to the deformation history of the material, and hence to specific working processes. Here we report on instructive examples of TOF neutron diffraction, including phase analyses of medieval Dutch tin-lead spoons, texture analyses of bronze specimens as well as of 16th-century silver coins.

  11. Haunted Quantum Entanglement, Quantum Erasure, and Orthogonality

    NASA Astrophysics Data System (ADS)

    Snyder, Douglas

    2010-02-01

    Both haunted quantum entanglement (hqe) and quantum erasure (qe) demonstrate interference. For interference, overlapping waves are needed which are likely supplied by equations such as 1/√ 2 [\\vert P/u>+\\vert P/l>] = \\vert P/s> and 1/√ 2 [\\vert P/u>-\\vert P/l>] = \\vert P/a> where \\vert P/u> and \\vert P/l> are generally considered orthogonal (i.e., no overlap) and \\vert P/s> and \\vert P/a> are symmetric and anti-symmetric wave functions. The conventional consideration of orthogonality in hqe and qe may need adjustment given empirical support for the presence of fringes and anti-fringes in qe. Orthogonality as regards hqe and qe is tied to the possibility of obtaining which way information. If this possibility is lost, it would appear that orthogonality which is based on this possibility may be lost. A completed measurement appears central to establishing orthogonality as regards hqe and qe. In hqe, this completed measurement could be for example an atom passing through a double slit arrangement after having emitted a photon in one of two micromaser cavities, thus providing general which way information without specifying through which specific slit the atom passed. In qe, the completed measurement could be this atom subsequently striking a detection screen, providing the ability to obtain information regarding through which specific slit the atom passed. Hqe and qe occur when which way information is lost before their respective completed measurements are made. )

  12. Face hallucination using orthogonal canonical correlation analysis

    NASA Astrophysics Data System (ADS)

    Zhou, Huiling; Lam, Kin-Man

    2016-05-01

    A two-step face-hallucination framework is proposed to reconstruct a high-resolution (HR) version of a face from an input low-resolution (LR) face, based on learning from LR-HR example face pairs using orthogonal canonical correlation analysis (orthogonal CCA) and linear mapping. In the proposed algorithm, face images are first represented using principal component analysis (PCA). Canonical correlation analysis (CCA) with the orthogonality property is then employed, to maximize the correlation between the PCA coefficients of the LR and the HR face pairs to improve the hallucination performance. The original CCA does not own the orthogonality property, which is crucial for information reconstruction. We propose using orthogonal CCA, which is proven by experiments to achieve a better performance in terms of global face reconstruction. In addition, in the residual-compensation process, a linear-mapping method is proposed to include both the inter- and intrainformation about manifolds of different resolutions. Compared with other state-of-the-art approaches, the proposed framework can achieve a comparable, or even better, performance in terms of global face reconstruction and the visual quality of face hallucination. Experiments on images with various parameter settings and blurring distortions show that the proposed approach is robust and has great potential for real-world applications.

  13. Top-down proteomic identification of bacterial protein biomarkers and toxins using MALDI-TOF-TOF-MS/MS and post-source decay

    USDA-ARS?s Scientific Manuscript database

    Matrix-assisted laser desorption/ionization time-of-flight-time-of-flight mass spectrometry(MALDI-TOF-TOF-MS)has provided new capabilities for the rapid identification of digested and non-digested proteins. The tandem (MS/MS) capability of TOF-TOF instruments allows precursor ion selection/isolation...

  14. Pegfilgrastim Injection

    MedlinePlus

    Pegfilgrastim comes as a solution (liquid) in prefilled injection syringes and in a pre-filled automatic injection device (On-body Injector) to inject subcutaneously (under the skin). If you are using pegfilgrastim to ...

  15. Cabazitaxel Injection

    MedlinePlus

    ... injection is used along with prednisone to treat prostate cancer (cancer of a male reproductive organ) that has ... cabazitaxel injection is usually used in men with prostate cancer. If used by pregnant women, cabazitaxel injection can ...

  16. Ondansetron Injection

    MedlinePlus

    Zofran® Injection ... Ondansetron injection is used to prevent nausea and vomiting caused by cancer chemotherapy and surgery. Ondansetron is in a ... medications: or any of the ingredients in ondansetron injection. Ask your pharmacist for a list of the ...

  17. Triacylglycerol profile in cocoa liquors using MALDI-TOF and LC-ESI tandem mass spectrometry.

    PubMed

    Bono, Luca; Seraglia, Roberta; Roverso, Marco; Di Carro, Marina; Magi, Emanuele

    2014-09-01

    Triacylglycerols are responsible for chocolate's peculiar melting behavior: the type and position of fatty acids on the glycerol molecule strongly affect the melting range of cocoa butter. For this reason, the characterization of triglyceride composition in cocoa products is particularly important. In this work, triacylglycerols extracted from cocoa liquor samples were analyzed by matrix-assisted laser desorption/ionization time-of-flight (TOF) and electrospray ionization tandem mass spectrometry (MS/MS) coupled to liquid chromatography. Extracted samples were initially analyzed by direct injection in MS to obtain information on triglyceride molecular weights; relevant MS parameters were optimized, and the possible formation of the adducts [M + Na](+) and [M + NH(4)](+) was studied. Tandem mass experiments (both with triple quadrupole and TOF/TOF) were performed to study the fragmentation pathways (in particular, the loss of palmitic, stearic and oleic acid) and identify the triacylglycerols in cocoa liquors. Some signals of the spectra obtained with both MS techniques could indicate the presence of diacylglycerols in the cocoa extract, but different experimental evidences demonstrated that they were generated by the in-source fragmentation of triglycerides. A nonaqueous reversed-phase chromatographic separation was also developed and used to support the identification of the analytes; nine triacylglycerols were recognized in the cocoa liquor extracts. The three different batches of Ecuador cocoa liquor did not show significant differences in the triacylglycerol profile.

  18. Development and Application of Ultra-Performance Liquid Chromatography-TOF MS for Precision Large Scale Urinary Metabolic Phenotyping.

    PubMed

    Lewis, Matthew R; Pearce, Jake T M; Spagou, Konstantina; Green, Martin; Dona, Anthony C; Yuen, Ada H Y; David, Mark; Berry, David J; Chappell, Katie; Horneffer-van der Sluis, Verena; Shaw, Rachel; Lovestone, Simon; Elliott, Paul; Shockcor, John; Lindon, John C; Cloarec, Olivier; Takats, Zoltan; Holmes, Elaine; Nicholson, Jeremy K

    2016-09-20

    To better understand the molecular mechanisms underpinning physiological variation in human populations, metabolic phenotyping approaches are increasingly being applied to studies involving hundreds and thousands of biofluid samples. Hyphenated ultra-performance liquid chromatography-mass spectrometry (UPLC-MS) has become a fundamental tool for this purpose. However, the seemingly inevitable need to analyze large studies in multiple analytical batches for UPLC-MS analysis poses a challenge to data quality which has been recognized in the field. Herein, we describe in detail a fit-for-purpose UPLC-MS platform, method set, and sample analysis workflow, capable of sustained analysis on an industrial scale and allowing batch-free operation for large studies. Using complementary reversed-phase chromatography (RPC) and hydrophilic interaction liquid chromatography (HILIC) together with high resolution orthogonal acceleration time-of-flight mass spectrometry (oaTOF-MS), exceptional measurement precision is exemplified with independent epidemiological sample sets of approximately 650 and 1000 participant samples. Evaluation of molecular reference targets in repeated injections of pooled quality control (QC) samples distributed throughout each experiment demonstrates a mean retention time relative standard deviation (RSD) of <0.3% across all assays in both studies and a mean peak area RSD of <15% in the raw data. To more globally assess the quality of the profiling data, untargeted feature extraction was performed followed by data filtration according to feature intensity response to QC sample dilution. Analysis of the remaining features within the repeated QC sample measurements demonstrated median peak area RSD values of <20% for the RPC assays and <25% for the HILIC assays. These values represent the quality of the raw data, as no normalization or feature-specific intensity correction was applied. While the data in each experiment was acquired in a single continuous

  19. Orthogonal topography in the parallel input architecture of songbird HVC.

    PubMed

    Elliott, Kevin C; Wu, Wei; Bertram, Richard; Hyson, Richard L; Johnson, Frank

    2017-06-15

    Neural activity within the cortical premotor nucleus HVC (acronym is name) encodes the learned songs of adult male zebra finches (Taeniopygia guttata). HVC activity is driven and/or modulated by a group of five afferent nuclei (the Medial Magnocellular nucleus of the Anterior Nidopallium, MMAN; Nucleus Interface, NIf; nucleus Avalanche, Av; the Robust nucleus of the Arcopallium, RA; the Uvaeform nucleus, Uva). While earlier evidence suggested that HVC receives a uniformly distributed and nontopographic pattern of afferent input, recent evidence suggests this view is incorrect (Basista et al., ). Here, we used a double-labeling strategy (varying both the distance between and the axial orientation of dual tracer injections into HVC) to reveal a massively parallel and in some cases topographic pattern of afferent input. Afferent neurons target only one rostral or caudal location within medial or lateral HVC, and each HVC location receives convergent input from each afferent nucleus in parallel. Quantifying the distributions of single-labeled cells revealed an orthogonal topography in the organization of afferent input from MMAN and NIf, two cortical nuclei necessary for song learning. MMAN input is organized across the lateral-medial axis whereas NIf input is organized across the rostral-caudal axis. To the extent that HVC activity is influenced by afferent input during the learning, perception, or production of song, functional models of HVC activity may need revision to account for the parallel input architecture of HVC, along with the orthogonal input topography of MMAN and NIf. © 2017 Wiley Periodicals, Inc.

  20. Thermotriggered Catalyst-Free Modification of a Glass Surface with an Orthogonal Agent Possessing Nitrile N-Oxide and Masked Ketene Functions.

    PubMed

    Cheawchan, Sumitra; Uchida, Satoshi; Sogawa, Hiromitsu; Koyama, Yasuhito; Takata, Toshikazu

    2016-01-12

    The thermotriggered modification of surfaces was performed under catalyst-free conditions using an orthogonal agent possessing both nitrile N-oxide and Meldrum's acid moieties. The nitrile N-oxide moiety of the orthogonal agent successfully underwent catalyst-free 1,3-dipolar cycloaddition to unsaturated bonds of glass surfaces to produce Meldrum's acid-functionalized surfaces. The subsequent thermal decomposition of Meldrum's acid moiety in the presence of nucleophiles afforded versatile nucleophile-modified surfaces (e.g., wet, waterproof, and photoactive surfaces). Surface characteristics were investigated with the water contact angle, time-of-flight secondary ion mass spectrometry (TOF-SIMS), and X-ray photoelectron spectroscopy (XPS). In addition, the surface modification of silica nanoparticles using the orthogonal agent was also achieved to evaluate the density of the functional group concentration on the surface.

  1. Weak measurement with orthogonal preselection and postselection

    NASA Astrophysics Data System (ADS)

    Pang, Shengshi; Wu, Shengjun; Chen, Zeng-Bing

    2012-08-01

    Weak measurement is a novel quantum measurement scheme, which is usually characterized by the weak value formalism. To guarantee the validity of the weak value formalism, the fidelity between the preselection and the postselection should not be too small generally. In this work, we study the weak measurement on a qubit system with exactly or asymptotically orthogonal pre- and postselections. We shall establish a general rigorous framework for the weak measurement beyond the weak value formalism, and obtain the average output of a weak measurement when the pre- and postselections are exactly orthogonal. We shall also study the asymptotic behavior of a weak measurement in the limiting process that the pre- and postselections tend to be orthogonal.

  2. Phase array calibration orthogonal phase sequence

    NASA Technical Reports Server (NTRS)

    Sorace, Ronald E. (Inventor); Reinhardt, Victor S. (Inventor); Chan, Clinton (Inventor)

    1999-01-01

    Methods and systems for calibrating an array antenna are described. The array antenna has a plurality of antenna elements each having a signal with a phase and an amplitude forming an array antenna signal. For calibration, the phase of each element signal is sequentially switched one at a time through four orthogonal phase states. At each orthogonal phase state, the power of the array antenna signal is measured. A phase and an amplitude error for each of the element signals is determined based on the power of the array antenna signal at each of the four orthogonal phase states. The phase and amplitude of each of the element signals is then adjusted by the corresponding phase and amplitude errors.

  3. The stable computation of formal orthogonal polynomials

    NASA Astrophysics Data System (ADS)

    Beckermann, Bernhard

    1996-12-01

    For many applications - such as the look-ahead variants of the Lanczos algorithm - a sequence of formal (block-)orthogonal polynomials is required. Usually, one generates such a sequence by taking suitable polynomial combinations of a pair of basis polynomials. These basis polynomials are determined by a look-ahead generalization of the classical three term recurrence, where the polynomial coefficients are obtained by solving a small system of linear equations. In finite precision arithmetic, the numerical orthogonality of the polynomials depends on a good choice of the size of the small systems; this size is usually controlled by a heuristic argument such as the condition number of the small matrix of coefficients. However, quite often it happens that orthogonality gets lost.

  4. Orthogonal grid generation in two dimensional space

    NASA Astrophysics Data System (ADS)

    Theodoropoulos, T.; Bergeles, G.; Athanassiadis, N.

    A generalization of a numerical technique for orthogonal mapping, used by Ryskin and Leal (1983) for the construction of boundary-fitted curvilinear coordinate systems in two-dimensional space, is proposed. The boundary-fitted orthogonal curvilinear coordinates are assumed to transform to Cartesian coordinates by Laplace equations. The scale factors involved in the Laplace equations are computed on boundaries and estimated on internal points by means of an interpolation formula. Three types of boundary conditions have been tested: Dirichlet, Cauchy-Riemann, and pseudo-Dirichlet. It is shown that, using this method, grids appropriate for the calculation of flow fields over sharp edges, complex boundary shapes, etc., can be easily constructed. Examples on various geometries are presented, together with a convenient method to check the orthogonality of the resulting meshes.

  5. Trellis Coded Modulation Applied to Orthogonal Signals

    DTIC Science & Technology

    1993-03-01

    fti; the codted’on of InO-lmotoo|,. $end cawn.rt, Ih’ M trtldton e I k a ,n nE t# IO.,.(q *S(OI*ftO or In tftri . W•~dtI• % uq ~~O,, ’Ca rdu~ltit9...ABSTRACT (Maximum 200 Wtr) A method for the design of trellis codes for coherent detection of orthogonal signals in additive white Gaussian noise (AWGN...capacity, it is shown that a coding method requiring the same bandwidth efficiency for the orthogonal signal space and maximum likelihood (ML) soft decoding

  6. Investigating the microstructure of keratin extracted from wool: peptide sequence (MALDI-TOF/TOF) and protein conformation (FTIR)

    USDA-ARS?s Scientific Manuscript database

    Keratin was extracted from wool by reduction with 2-mercaptoethanol. It was isolated as intact keratin and characterized by its similar molecular weight, protein composition, and secondary structure to native keratin. Gel electrophoresis patterns and MALDI-TOF/TOF peptide sequences provided the ide...

  7. MALDI-TOF and cluster-TOF-SIMS imaging of Fabry disease biomarkers

    NASA Astrophysics Data System (ADS)

    Touboul, David; Roy, Sandrine; Germain, Dominique P.; Chaminade, Pierre; Brunelle, Alain; Laprevote, Olivier

    2007-02-01

    Fabry disease is an X-linked disorder of glycosphingolipid metabolism, in which a partial or total deficiency of [alpha]-galactosidase A, a lysosomal enzyme, results in the progressive accumulation of neutral glycosphingolipids (globotriaosylceramide and digalactosylceramide) in most fluids and tissues of the body. Few information is available about the composition and distribution in tissues of the accumulated glycosphingolipids species. Mass spectrometry imaging is an innovative technique, which can provide pieces of information about the distribution of numerous biological compounds, such as lipids, directly on the tissue sections. MALDI-TOF and cluster-TOF-SIMS imaging approaches were used to study the localization of lipids (cholesterol, cholesterol sulfate, vitamin E, glycosphingolipids ...) on skin and kidney sections of patients affected by the Fabry disease. Numerous information on pathophysiology were enlightened by both techniques.

  8. Ibandronate Injection

    MedlinePlus

    Boniva® Injection ... Ibandronate injection is used to treat osteoporosis (a condition in which the bones become thin and weak and break ... Ibandronate injection comes as a solution (liquid) to be injected into a vein by a doctor or nurse in ...

  9. Leuprolide Injection

    MedlinePlus

    Leuprolide injection comes as a long-acting suspension (Lupron) that is injected intramuscularly (into a muscle) by a doctor or nurse in a medical ... Depot-4 month, Lupron Depot-6 Month). Leuprolide injection also comes as a long-acting suspension (Eligard) that is injected subcutaneously (just under ...

  10. Orthogonal and Non-Orthogonal Tight Binding Parameters for III-V Semiconductors Nitrides

    NASA Astrophysics Data System (ADS)

    Martins, A. S.; Fellows, C. E.

    2016-12-01

    A simulated annealing (SA) approach is employed in the determination of different tight binding (TB) sets of parameters for the nitride semiconductors AlN, GaN and InN, as well their limitations and potentialities are also discussed. Two kinds of atomic basis set are considered: (i) the orthogonal sp 3 s∗ with interaction up to second neighbors and (ii) a spd non-orthogonal set, with the Hamiltonian matrix elements calculated within the Extended Hückel Theory (EHT) prescriptions. For the non-orthogonal method, TB parameters are given for both zincblend and wurtzite crystalline structures.

  11. Multipartite invariant states. II. Orthogonal symmetry

    SciTech Connect

    Chruscinski, Dariusz; Kossakowski, Andrzej

    2006-06-15

    We construct a class of multipartite states possessing orthogonal symmetry. This new class contains multipartite states which are invariant under the action of local unitary operations introduced in our preceding paper [Phys. Rev. A 73, 062314 (2006)]. We study basic properties of multipartite symmetric states: separability criteria and multi-PPT conditions.

  12. Microcapsules with three orthogonal reactive sites

    PubMed Central

    Mason, Brian P.; Hira, Steven M.; Strouse, Geoffrey F.; McQuade, D. Tyler

    2009-01-01

    Polymeric microcapsules containing reactive sites on the shell surface and two orthogonally reactive polymers encapsulated within the interior are selectively labeled. The capsules provide three spatially separate and differentially reactive sites. Confocal fluorescence microscopy is used to characterize the distribution of labels. Polymers encapsulated are distributed homogeneously within the core and do not interact with the shell even when oppositely charged. PMID:19254010

  13. Simulating Nonequilibrium Radiation via Orthogonal Polynomial Refinement

    DTIC Science & Technology

    2015-01-07

    resolution orthogonal polynomial refinement technique for this multi-disciplinary science. Through the computational mathematics basic research, a...thus the phenomenon must be modeled [1-4]. In addition, the chemical species concentrations and its associated thermodynamic states of an inhomogeneous... thermodynamic state and compositions of the flow medium. The required optical parameters for the nonequilibrium phenomena simulation need to be determined

  14. 2D nearly orthogonal mesh generation

    NASA Astrophysics Data System (ADS)

    Zhang, Yaoxin; Jia, Yafei; Wang, Sam S. Y.

    2004-11-01

    The Ryskin and Leal (RL) system is the most widely used mesh generation system for the orthogonal mapping. However, when this system is used in domains with complex geometry, particularly in those with sharp corners and strong curvatures, serious distortion or overlapping of mesh lines may occur and an acceptable solution may not be possible. In the present study, two methods are proposed to generate nearly orthogonal meshes with the smoothness control. In the first method, the original RL system is modified by introducing smoothness control functions, which are formulated through the blending of the conformal mapping and the orthogonal mapping; while in the second method, the RL system is modified by introducing the contribution factors. A hybrid system of both methods is also developed. The proposed methods are illustrated by several test examples. Applications of these methods in a natural river channel are demonstrated. It is shown that the modified RL systems are capable of producing meshes with an adequate balance between the orthogonality and the smoothness for complex computational domains without mesh distortions and overlapping.

  15. Gram-Schmidt Orthogonalization by Gauss Elimination.

    ERIC Educational Resources Information Center

    Pursell, Lyle; Trimble, S. Y.

    1991-01-01

    Described is the hand-calculation method for the orthogonalization of a given set of vectors through the integration of Gaussian elimination with existing algorithms. Although not numerically preferable, this method adds increased precision as well as organization to the solution process. (JJK)

  16. About orthogonality one system of functions

    NASA Astrophysics Data System (ADS)

    Barmenkov, A. N.

    2017-01-01

    For the modeling of physical processes is proposed to use representation of functions by a special trigonometric system. We present a method for constructing full orthogonal sequences of this type depending on the parameter. This parameter can be selected optimally based on specification of modeling task.

  17. Families of Ellipses and their Orthogonal Trajectories

    ERIC Educational Resources Information Center

    Ayoub, Ayoub B.

    2004-01-01

    The topic of orthogonal trajectories is taught as a geometric application of first order differential equations. Instructors usually elaborate on the concept of a family of curves to emphasize that they are different even if their members are of the same type. In this article the author considers five families of ellipses, discusses their…

  18. Local copying of orthogonal entangled quantum states

    NASA Astrophysics Data System (ADS)

    Anselmi, Fabio; Chefles, Anthony; Plenio, Martin B.

    2004-11-01

    In classical information theory one can, in principle, produce a perfect copy of any input state. In quantum information theory, the no cloning theorem prohibits exact copying of non-orthogonal states. Moreover, if we wish to copy multiparticle entangled states and can perform only local operations and classical communication (LOCC), then further restrictions apply. We investigate the problem of copying orthogonal, entangled quantum states with an entangled blank state under the restriction to LOCC. Throughout, the subsystems have finite dimension D. We show that if all of the states to be copied are non-maximally entangled, then novel LOCC copying procedures based on entanglement catalysis are possible. We then study in detail the LOCC copying problem where both the blank state and at least one of the states to be copied are maximally entangled. For this to be possible, we find that all the states to be copied must be maximally entangled. We obtain a necessary and sufficient condition for LOCC copying under these conditions. For two orthogonal, maximally entangled states, we provide the general solution to this condition. We use it to show that for D = 2, 3, any pair of orthogonal, maximally entangled states can be locally copied using a maximally entangled blank state. However, we also show that for any D which is not prime, one can construct pairs of such states for which this is impossible.

  19. Gram-Schmidt Orthogonalization by Gauss Elimination.

    ERIC Educational Resources Information Center

    Pursell, Lyle; Trimble, S. Y.

    1991-01-01

    Described is the hand-calculation method for the orthogonalization of a given set of vectors through the integration of Gaussian elimination with existing algorithms. Although not numerically preferable, this method adds increased precision as well as organization to the solution process. (JJK)

  20. Higher-Pressure Ion Funnel Trap Interface for Orthogonal Time-of-Flight Mass Spectrometry

    PubMed Central

    Ibrahim, Yehia; Belov, Mikhail E.; Tolmachev, Aleksey V.; Prior, David C.; Smith, Richard D.

    2008-01-01

    A combined electrodynamic ion funnel and ion trap coupled to an orthogonal acceleration (oa)-time-of-flight mass spectrometer (oa-TOF MS) was developed and characterized. The ion trap was incorporated through the use of added terminal electrodynamic ion funnel electrodes enabling control over the axial DC gradient in the trap section. The ion trap operates efficiently at a pressure of 1 Torr, and measurements indicate a maximum charge capacity of ~3×107 charges. An order of magnitude increase in sensitivity was observed in the analysis of low concentration peptides mixtures with oa-TOF MS in the trapping mode as compared to the continuous regime. A signal increase in the trapping mode was accompanied by reduction in the background chemical noise, due to more efficient desolvation of e.g., solvent related clusters. Controlling the ion trap ejection time was found to result in efficient removal of singly charged species and improving signal-to-noise ratio (S/N) for the multiply charged analytes. PMID:17850113

  1. ABJM amplitudes and the positive orthogonal Grassmannian

    NASA Astrophysics Data System (ADS)

    Huang, Yu-tin; Wen, CongKao

    2014-02-01

    A remarkable connection between perturbative scattering amplitudes of four dimensional planar SYM, and the stratification of the positive Grassmannian, was revealed in the seminal work of Arkani-Hamed et al. Similar extension for three-dimensional ABJM theory was proposed. Here we establish a direct connection between planar scattering amplitudes of ABJM theory, and singularities thereof, to the stratification of the positive orthogonal Grassmannian. In particular, scattering processes are constructed through on-shell diagrams, which are simply iterative gluing of the fundamental four-point amplitude. Each diagram is then equivalent to the merging of fundamental OG2 orthogonal Grassmannian to form a larger OG k , where 2 k is the number of external particles. The invariant information that is encoded in each diagram is precisely this stratification. This information can be easily read off via permutation paths of the on-shell diagram, which also can be used to derive a canonical representation of OG k that manifests the vanishing of consecutive minors as the singularity of all on-shell diagrams. Quite remarkably, for the BCFW recursion representation of the tree-level amplitudes, the on-shell diagram manifests the presence of all physical factorization poles, as well as the cancellation of the spurious poles. After analytically continuing the orthogonal Grassmannian to split signature, we reveal that each on-shell diagram in fact resides in the positive cell of the orthogonal Grassmannian, where all minors are positive. In this language, the amplitudes of ABJM theory is simply an integral of a product of d log forms, over the positive orthogonal Grassmannian.

  2. A connection between orthogonal polynomials on the unit circle and matrix orthogonal polynomials on the real line

    NASA Astrophysics Data System (ADS)

    Cantero, M. J.; Ferrer, M. P.; Moral, L.; Velázquez, L.

    2003-05-01

    Szego's procedure to connect orthogonal polynomials on the unit circle and orthogonal polynomials on [-1,1] is generalized to nonsymmetric measures. It generates the so-called semi-orthogonal functions on the linear space of Laurent polynomials [Lambda], and leads to a new orthogonality structure in the module [Lambda]×[Lambda]. This structure can be interpreted in terms of a 2×2 matrix measure on [-1,1], and semi-orthogonal functions provide the corresponding sequence of orthogonal matrix polynomials. This gives a connection between orthogonal polynomials on the unit circle and certain classes of matrix orthogonal polynomials on [-1,1]. As an application, the strong asymptotics of these matrix orthogonal polynomials is derived, obtaining an explicit expression for the corresponding Szego's matrix function.

  3. MALDI-Q-TOF mass spectrometric determination of gold and platinum in tissues using their diethyldithiocarbamate chelate complexes.

    PubMed

    Minakata, Kayoko; Nozawa, Hideki; Yamagishi, Itaru; Gonmori, Kunio; Suzuki, Masako; Hasegawa, Koutaro; Wurita, Amin; Watanabe, Kanako; Suzuki, Osamu

    2014-02-01

    A rapid determination method is presented for gold (Au(3+)) and platinum (Pt(4+)) in tissues using matrix-assisted laser desorption ionization quadrupole time-of-flight mass spectrometry (MALDI-Q-TOF-MS). Au and Pt ions in wet-ashed tissue solution were reacted with diethyldithiocarbamate (DDC), and the resulting chelate complex ions Au(DDC)2 (+) and Pt(DDC)3 (+) were detected by MALDI-Q-TOF-MS using α-cyano-4-hydroxycinnamic acid as a matrix. The limit of detection (LOD) was 0.8 ng/g tissue and the quantification range was 2-400 ng/g for Au, and the LOD was 6 ng/g tissue and the quantification range was 20-4,000 ng/g for Pt. The Pt levels detected by MALDI-Q-TOF-MS in several tissues of a patient overdosed with cisplatin were nearly the same as those detected by flow-injection electrospray ionization mass spectrometry. The LODs of Au and Pt were 0.04 pg per well (sample spot) and 0.3 pg per well, respectively. To our knowledge, this is the first attempt to quantify Au(3+) and Pt(4+) ions in tissues by MALDI-Q-TOF-MS.

  4. SS{sub p}G: A strongly orthogonal geminal method with relaxed strong orthogonality

    SciTech Connect

    Cagg, Brett A. Rassolov, Vitaly A.

    2014-10-28

    Strong orthogonality is an important constraint placed on geminal wavefunctions in order to make variational minimization tractable. However, strong orthogonality prevents certain, possibly important, excited configurations from contributing to the ground state description of chemical systems. The presented method lifts strong orthogonality constraint from geminal wavefunction by computing a perturbative-like correction to each geminal independently from the corrections to all other geminals. The method is applied to the Singlet-type Strongly orthogonal Geminals variant of the geminal wavefunction. Comparisons of this new SS{sub p}G method are made to the non-orthogonal AP1roG and the unconstrained Geminal Mean-Field Configuration Interaction method using small atomic and molecular systems. The correction is also compared to Density Matrix Renormalization Group calculations performed on long polyene chains in order to assess its scalability and applicability to large strongly correlated systems. The results of these comparisons demonstrate that although the perturbative correction is small, it may be a necessary first step in the systematic improvement of any strongly orthogonal geminal method.

  5. Influence of internal standard charge state on the accuracy of mass measurements in orthogonal acceleration time-of-flight mass spectrometers.

    PubMed

    Charles, Laurence

    2008-01-01

    Accuracy of mass measurements performed in orthogonal acceleration time-of-flight (oa-TOF) mass spectrometers highly depends on the quality of the signal and the internal calibration. The use of two reference compounds which bracket the targeted unknown, give rise to ions with sufficient signal-to-noise ratio while avoiding detector saturation and produce signals of similar intensity as compared to the target is a common requirement which allow a 5 ppm accuracy on a routine basis. Ion charge state is demonstrated here to be an additional and particularly critical parameter. Using internal references of lower charge state than the target ion systematically yielded overestimated data. Errors measured for quadruply charged molecules were in the range 16-18 ppm when mass calibrants were singly charged ions while accuracy was below 5 ppm when references and target ions were in the same charge state. Magnitude of errors was found to increase with the difference in charge state. This phenomenon arises from the orthogonal acceleration of ions in the TOF analyzer, an interface implemented in all TOF mass spectrometers to accommodate continuous beam ionization sources.

  6. Generalized Orthogonality Relations and SU(1,1)-Quantum Tomography

    NASA Astrophysics Data System (ADS)

    Carmeli, C.; Cassinelli, G.; Zizzi, F.

    2009-06-01

    We present a mathematically precise derivation of some generalized orthogonality relations for the discrete series representations of SU(1,1). These orthogonality relations are applied to derive tomographical reconstruction formulas. Their physical interpretation is also discussed.

  7. Weak lensing tomography with orthogonal polynomials

    NASA Astrophysics Data System (ADS)

    Schäfer, Björn Malte; Heisenberg, Lavinia

    2012-07-01

    The topic of this paper is weak cosmic shear tomography where the line-of-sight weighting is carried out with a set of specifically constructed orthogonal polynomials, dubbed Tomography with Orthogonal Radial Distance Polynomial Systems (TaRDiS). We investigate the properties of these polynomials and employ weak convergence spectra, which have been obtained by weighting with these polynomials, for the estimation of cosmological parameters. We quantify their power in constraining parameters in a Fisher matrix technique and demonstrate how each polynomial projects out statistically independent information, and how the combination of multiple polynomials lifts degeneracies. The assumption of a reference cosmology is needed for the construction of the polynomials, and as a last point we investigate how errors in the construction with a wrong cosmological model propagate to misestimates in cosmological parameters. TaRDiS performs on a similar level as traditional tomographic methods and some key features of tomography are made easier to understand.

  8. Greedy Criterion in Orthogonal Greedy Learning.

    PubMed

    Xu, Lin; Lin, Shaobo; Zeng, Jinshan; Liu, Xia; Fang, Yi; Xu, Zongben

    2017-02-23

    Orthogonal greedy learning (OGL) is a stepwise learning scheme that starts with selecting a new atom from a specified dictionary via the steepest gradient descent (SGD) and then builds the estimator through orthogonal projection. In this paper, we found that SGD is not the unique greedy criterion and introduced a new greedy criterion, called as ''δ-greedy threshold'' for learning. Based on this new greedy criterion, we derived a straightforward termination rule for OGL. Our theoretical study shows that the new learning scheme can achieve the existing (almost) optimal learning rate of OGL. Numerical experiments are also provided to support that this new scheme can achieve almost optimal generalization performance while requiring less computation than OGL.

  9. Orthogonal photoswitching in a multifunctional molecular system

    PubMed Central

    Lerch, Michael M.; Hansen, Mickel J.; Velema, Willem A.; Szymanski, Wiktor; Feringa, Ben L.

    2016-01-01

    The wavelength-selective, reversible photocontrol over various molecular processes in parallel remains an unsolved challenge. Overlapping ultraviolet-visible spectra of frequently employed photoswitches have prevented the development of orthogonally responsive systems, analogous to those that rely on wavelength-selective cleavage of photo-removable protecting groups. Here we report the orthogonal and reversible control of two distinct types of photoswitches in one solution, that is, a donor–acceptor Stenhouse adduct (DASA) and an azobenzene. The control is achieved by using three different wavelengths of irradiation and a thermal relaxation process. The reported combination tolerates a broad variety of differently substituted photoswitches. The presented system is also extended to an intramolecular combination of photoresponsive units. A model application for an intramolecular combination of switches is presented, in which the DASA component acts as a phase-transfer tag, while the azobenzene moiety independently controls the binding to α-cyclodextrin. PMID:27401266

  10. An orientation-selective orthogonal lapped transform.

    PubMed

    Kunz, Dietmar

    2008-08-01

    A novel critically sampled orientation-selective orthogonal lapped transform called the lapped Hartley transform (LHT) is derived. In a first step, overlapping basis functions are generated by modulating basis functions of a 2-D block Hartley transform by a cosine wave. To achieve invertibility and orthogonality, an iterative filter is applied as prefilter in the analysis and as postfilter in the synthesis operation, respectively. Alternatively, filtering can be restricted to analysis or synthesis, ending up with a biorthogonal transform (LHT-PR, LHT-PO). A statistical analysis based on a 4000-image data base shows that the LHT and LHT-PO have better redundancy removal properties than other block or lapped transforms. Finally, image compression and noise removal examples are given, showing the advantages of the LHT especially in images containing oriented textures.

  11. HOLA: Human-like Orthogonal Network Layout.

    PubMed

    Kieffer, Steve; Dwyer, Tim; Marriott, Kim; Wybrow, Michael

    2016-01-01

    Over the last 50 years a wide variety of automatic network layout algorithms have been developed. Some are fast heuristic techniques suitable for networks with hundreds of thousands of nodes while others are multi-stage frameworks for higher-quality layout of smaller networks. However, despite decades of research currently no algorithm produces layout of comparable quality to that of a human. We give a new "human-centred" methodology for automatic network layout algorithm design that is intended to overcome this deficiency. User studies are first used to identify the aesthetic criteria algorithms should encode, then an algorithm is developed that is informed by these criteria and finally, a follow-up study evaluates the algorithm output. We have used this new methodology to develop an automatic orthogonal network layout method, HOLA, that achieves measurably better (by user study) layout than the best available orthogonal layout algorithm and which produces layouts of comparable quality to those produced by hand.

  12. Multicarrier orthogonal spread-spectrum (MOSS) data communications

    DOEpatents

    Smith, Stephen F.; Dress, William B.

    2008-01-01

    Systems and methods are described for multicarrier orthogonal spread-spectrum (MOSS) data communication. A method includes individually spread-spectrum modulating at least two of a set of orthogonal frequency division multiplexed carriers, wherein the resulting individually spread-spectrum modulated at least two of a set of orthogonal frequency division multiplexed carriers are substantially mutually orthogonal with respect to both frequency division multiplexing and spread-spectrum modulation.

  13. Golimumab Injection

    MedlinePlus

    ... body and causes pain, swelling, and damage) including: rheumatoid arthritis (condition in which the body attacks its own ... doctor.If golimumab injection is used to treat rheumatoid arthritis, it may also be injected intravenously (into a ...

  14. Adalimumab Injection

    MedlinePlus

    ... causes pain, swelling, and damage) including the following: rheumatoid arthritis (a condition in which the body attacks its ... If you are using adalimumab injection to treat rheumatoid arthritis, your doctor may tell you to inject the ...

  15. Ipilimumab Injection

    MedlinePlus

    ... are pregnant, plan to become pregnant, or are breast-feeding. If you become pregnant while receiving ipilimumab injection, call your doctor. Ipilimumab injection may cause your baby to be born too early or to die before birth.

  16. Teniposide Injection

    MedlinePlus

    ... in men. You should not become pregnant or breast-feed while you are receiving teniposide injection. If you or your partner become pregnant while receiving teniposide injection, call your doctor. Teniposide may harm the fetus.

  17. Dexrazoxane Injection

    MedlinePlus

    ... Dexrazoxane injection (Zinecard) is used to prevent or decrease heart damage caused by doxorubicin in women who ... with doxorubicin. Dexrazoxane injection (Totect) is used to decrease damage to the skin and tissues that may ...

  18. Colistimethate Injection

    MedlinePlus

    ... is used to treat certain infections caused by bacteria. Colistimethate injection is in a class of medications called antibiotics. It works by killing bacteria.Antibiotics such as colistimethate injection will not work ...

  19. Chloramphenicol Injection

    MedlinePlus

    ... treat certain types of serious infections caused by bacteria when other antibiotics cannot be used. Chloramphenicol injection ... antibiotics. It works by stopping the growth of bacteria..Antibiotics such as chloramphenicol injection will not work ...

  20. Natalizumab Injection

    MedlinePlus

    ... your condition. Keep all appointments to receive natalizumab injection even if you feel well. ... tests to check your body's response to natalizumab injection.It is important ... you are taking, as well as any products such as vitamins, minerals, or ...

  1. Methylnaltrexone Injection

    MedlinePlus

    ... taking opioid medications, you should stop using methylnaltrexone injection as well.You should stop taking other laxative medications when you start using methylnaltrexone injection. However, be sure to let your doctor know ...

  2. Triptorelin Injection

    MedlinePlus

    ... used to treat the symptoms associated with advanced prostate cancer. Triptorelin injection (Triptodur) is used to treat central ... a medical office or clinic. When used for prostate cancer, an injection of 3.75 mg of triptorelin ( ...

  3. Degarelix Injection

    MedlinePlus

    Degarelix injection is used to treat advanced prostate cancer (cancer that begins in the prostate [a male reproductive gland]). Degarelix injection is in a class of medications called gonadotropin-releasing hormone (GnRH) ...

  4. Medroxyprogesterone Injection

    MedlinePlus

    ... Medroxyprogesterone injection is a very effective method of birth control but does not prevent the spread of human ... you have been using a different method of birth control and are switching to medroxyprogesterone injection, your doctor ...

  5. Dolasetron Injection

    MedlinePlus

    ... treat nausea and vomiting that may occur after surgery. Dolasetron injection should not be used to prevent ... a single injection just before the end of surgery or as soon as nausea or vomiting occurs. ...

  6. Levoleucovorin Injection

    MedlinePlus

    Levoleucovorin injection is used to prevent harmful effects of methotrexate (Rheumatrex, Trexall) when methotrexate is used to to treat certain types of cancer. Levoleucovorin injection is also used to treat people ...

  7. Etelcalcetide Injection

    MedlinePlus

    Etelcalcetide injection is used to treat secondary hyperparathyroidism (condition in which the body produces too much parathyroid ... blood when the kidneys are not working properly.) Etelcalcetide injection is in a class of medications called ...

  8. Dupilumab Injection

    MedlinePlus

    ... injection is used to treat the symptoms of eczema (atopic dermatitis; a skin disease that causes the ... use other medications for their condition or whose eczema has not responded to other medications. Dupilumab injection ...

  9. Methylprednisolone Injection

    MedlinePlus

    ... allergic reactions. Methylprednisolone injection is used in the management of multiple sclerosis (a disease in which the ... laboratory test, tell your doctor and the laboratory personnel that you are using methylprednisolone injection.If you ...

  10. Clindamycin Injection

    MedlinePlus

    ... your treatment with clindamycin injection or during the first several months after your treatment is finished: watery or bloody stools, diarrhea, stomach cramps, or fever.Talk to your doctor about the risks of receiving clindamycin injection.

  11. Obinutuzumab Injection

    MedlinePlus

    Obinutuzumab injection is used with chlorambucil (Leukeran) to treat chronic lymphocytic leukemia (CLL; a type of cancer of the white blood cells). Obinutuzumab injection is in a class of medications called ...

  12. Ferumoxytol Injection

    MedlinePlus

    Ferumoxytol injection is used to treat iron-deficiency anemia (a lower than normal number of red blood ... and may cause the kidneys to stop working). Ferumoxytol injection is in a class of medications called ...

  13. Pralatrexate Injection

    MedlinePlus

    Pralatrexate injection is used to treat peripheral T-cell lymphoma (PTCL; a form of cancer that begins in a ... come back after treatment with other medications. Pralatrexate injection has not been shown to help people who ...

  14. Cyanocobalamin Injection

    MedlinePlus

    Cyanocobalamin injection is used to treat and prevent a lack of vitamin B12 that may be caused by any ... organs) and permanent damage to the nerves. Cyanocobalamin injection also may be given as a test to ...

  15. Paclitaxel Injection

    MedlinePlus

    Paclitaxel injection manufactured with human albumin is used to treat breast cancer that has not improved or that has come back after treatment with other medications. Paclitaxel injection manufactured with polyoxyethylated castor oil is used to ...

  16. Peramivir Injection

    MedlinePlus

    Peramivir injection is used to treat some types of influenza infection ('flu') in people who have had symptoms of ... flu for no longer than 2 days. Peramivir injection is in a class of medications called neuraminidase ...

  17. Cefotetan Injection

    MedlinePlus

    Cefotetan injection is used to treat infections of the lungs, skin, bones, joints, stomach area, blood, female reproductive organs, and urinary tract. Cefotetan injection is also used before surgery to prevent infections. ...

  18. Mipomersen Injection

    MedlinePlus

    Mipomersen injection is used to decrease levels of cholesterol and other fatty substances in the blood in people who ... that removes LDL from the blood), but mipomersen injection should not be used along with this treatment. ...

  19. Romiplostim Injection

    MedlinePlus

    Romiplostim injection is used to increase the number of platelets (cells that help the blood to clot) in order ... low number of platelets in the blood). Romiplostim injection should only be used in people who cannot ...

  20. Hydrocortisone Injection

    MedlinePlus

    Hydrocortisone injection is used to treat symptoms of low corticosteroid levels (lack of certain substances that are usually produced ... also used to treat severe allergic reactions. Hydrocortisone injection is used in the management of multiple sclerosis ( ...

  1. Palivizumab Injection

    MedlinePlus

    Palivizumab injection is used to help prevent respiratory syncytial virus (RSV; common virus that can cause serious lung infections) ... or have certain heart or lung diseases. Palivizumab injection is not used to treat the symptoms of ...

  2. Naltrexone Injection

    MedlinePlus

    Naltrexone injection is used along with counseling and social support to help people who have stopped drinking large amounts of alcohol to avoid drinking again. Naltrexone injection is also used along with counseling and social ...

  3. Tesamorelin Injection

    MedlinePlus

    Tesamorelin injection is used to decrease the amount of extra fat in the stomach area in adults with human ... fat in certain areas of the body). Tesamorelin injection is not used to help with weight loss. ...

  4. Tigecycline Injection

    MedlinePlus

    Tigecycline injection used to treat certain serious infections including community acquired pneumonia (a lung infection that developed in a ... area between the chest and the waist). Tigecycline injection should not be used to treat pneumonia that ...

  5. Eculizumab Injection

    MedlinePlus

    Eculizumab injection is used to treat paroxysmal nocturnal hemoglobinuria (PNH: a type of anemia in which too many red ... oxygen to all parts of the body). Eculizumab injection is also used to treat atypical hemolytic uremic ...

  6. Pembrolizumab Injection

    MedlinePlus

    Pembrolizumab injection is used to treat melanoma (a type of skin cancer) that cannot be treated with surgery or ... spread to other parts of the body. Pembrolizumab injection is also used to treat a certain type ...

  7. Oxacillin Injection

    MedlinePlus

    ... is used to treat infections caused by certain bacteria. Oxacillin injection is in a class of medications called penicillins. It works by killing bacteria.Antibiotics such as oxacillin injection will not work ...

  8. Cefoxitin Injection

    MedlinePlus

    ... injection is used to treat infections caused by bacteria including pneumonia and other lower respiratory tract (lung) ... medications called cephamycin antibiotics. It works by killing bacteria.Antibiotics such as cefoxitin injection will not work ...

  9. Nafcillin Injection

    MedlinePlus

    ... to treat infections caused by certain types of bacteria. Nafcillin injection is in a class of medications called penicillins. It works by killing bacteria.Antibiotics such as nafcillin injection will not work ...

  10. Doripenem Injection

    MedlinePlus

    ... tract, kidney, and abdomen that are caused by bacteria. Doripenem injection is not approved by the Food ... medications called carbapenem antibiotics. It works by killing bacteria.Antibiotics such as doripenem injection will not work ...

  11. Application of nano-LC-MALDI-TOF/TOF-MS for proteomic analysis of microvesicles.

    PubMed

    Kasprzyk, Joanna; Stępień, Ewa; Piekoszewski, Wojciech

    2017-03-01

    Activated platelets and platelet derived microvesicles (PMVs) emerged recently to be promising biomarkers. There is no universal procedure to carry out the proteomic analysis on microvesicles. In this study we proposed a nano-liquid chromatography (nano-LC) technique coupled off-line with a spectrometric measurement MALDI-TOF-MS/MS as a throughput and time-saving procedure. In this study we developed a simplified method to evaluate the protein composition of platelet organelles and PMVs. Platelet-rich plasma (PRP) was collected from healthy donors. PMVs were generated from washed and thrombin activated platelets. Activated platelets from every donor were used to compare the PMV proteome. Enzymatic digestion of protein lysate was carried out using Filter Aided Sample Preparation (FASP) method with trypsin as a proteolytic enzyme. Tryptic peptides derived from PMVs and activated platelets were analysed using nano-LC coupled off-line mode with a MALDI-TOF/TOF-MS. PMV and platelet protein identification was performed using the Mascot engine for searching against the Swiss-Prot human database. The precision tolerance was 100ppm for peptide masses and 0.7Da for fragment ion masses. Individual peptide matches with a score above 28 were considered statistically significant. In total, 446 proteins were identified in PMVs and 513 proteins in activated platelets. Among them 190 were specific for activated platelets and 123 were PMV specific. Cellular component analysis of identified proteins revealed that PMVs contained relatively more extracellular proteins than activated platelets (9.6 vs. 6.0 %) and unique synaptic proteins (0.3%). A new simplified bottom-up method for PMV proteome analysis allowed eliminating the drawbacks of the previously used protocols. This approach can be used in PMV proteome identification. Copyright © 2016 The Canadian Society of Clinical Chemists. Published by Elsevier Inc. All rights reserved.

  12. The NIF 4.5-m nTOF Detectors

    SciTech Connect

    Moran, M J; Bond, E J; Clancy, T J; Eckart, M J; Khater, H Y; Glebov, V Y

    2012-05-07

    The first several campaigns of laser fusion experiments at the National Ignition Facility (NIF) included a family of high-sensitivity scintillator/photodetector neutron-time-of-flight (nTOF) detectors for measuring DD and DT neutron yields. The detectors provided consistent neutron yield benchmarks from below 1E9 (DD) to nearly 1E15 (DT). The detectors demonstrated DT yield measurement precisions better than 5%, but the absolute accuracy relies on cross calibration with independent measurements of absolute neutron yield. The 4.5-m nTOF data have provided a useful testbed for testing improvements in nTOF data processing, especially with respect to improving the accuracies of the detector impulse response functions. The resulting improvements in data analysis methods have produced more accurate results. In summary, results from the NIF 4.5-m nTOF detectors have provided consistent measurements of DD and DT neutron yields from laser-fusion implosions.

  13. Complete spacelike hypersurfaces in orthogonally splitted spacetimes

    NASA Astrophysics Data System (ADS)

    Colombo, Giulio; Rigoli, Marco

    2017-10-01

    We provide some "half-space theorems" for spacelike complete non-compact hypersurfaces into orthogonally splitted spacetimes. In particular we generalize some recent work of Rubio and Salamanca on maximal spacelike compact hypersurfaces. Beside compactness, we also relax some of their curvature assumptions and even consider the case of nonconstant mean curvature bounded from above. The analytic tools used in various arguments are based on some forms of the weak maximum principle.

  14. Short energetic electron bunches from laser wakefield accelerator with orthogonally polarized perpendicularly crossed laser pulses

    NASA Astrophysics Data System (ADS)

    Horný, Vojtěch; Petržílka, Václav; Klimo, Ondřej; Krůs, Miroslav

    2017-05-01

    Electron acceleration with optical injection by a perpendicularly propagating and orthogonally polarized low intensity laser pulse into a nonlinear plasma wave driven by a short intense laser pulse was explored by particle- in-cell simulations. The scheme presented here provides an energetic electron bunch in the first ion cavity with a low energy spread. The electron bunch short and compact, with the mean energy about 400 MeV and a low energy spread about 10 MeV in time of 6 ps of acceleration. The injected charge is several tens of pC for the low intensity of the injection pulse. Initial positions of electrons forming the energetic bunch are shown and then these electrons are followed during the simulation in order to understand the injection process and determine electron bunch properties.

  15. Direct energy functional minimization under orthogonality constraints

    NASA Astrophysics Data System (ADS)

    Weber, Valéry; VandeVondele, Joost; Hutter, Jürg; Niklasson, Anders M. N.

    2008-02-01

    The direct energy functional minimization problem in electronic structure theory, where the single-particle orbitals are optimized under the constraint of orthogonality, is explored. We present an orbital transformation based on an efficient expansion of the inverse factorization of the overlap matrix that keeps orbitals orthonormal. The orbital transformation maps the orthogonality constrained energy functional to an approximate unconstrained functional, which is correct to some order in a neighborhood of an orthogonal but approximate solution. A conjugate gradient scheme can then be used to find the ground state orbitals from the minimization of a sequence of transformed unconstrained electronic energy functionals. The technique provides an efficient, robust, and numerically stable approach to direct total energy minimization in first principles electronic structure theory based on tight-binding, Hartree-Fock, or density functional theory. For sparse problems, where both the orbitals and the effective single-particle Hamiltonians have sparse matrix representations, the effort scales linearly with the number of basis functions N in each iteration. For problems where only the overlap and Hamiltonian matrices are sparse the computational cost scales as O(M2N ), where M is the number of occupied orbitals. We report a single point density functional energy calculation of a DNA decamer hydrated with 4003 water molecules under periodic boundary conditions. The DNA fragment containing a cis-syn thymine dimer is composed of 634 atoms and the whole system contains a total of 12 661 atoms and 103 333 spherical Gaussian basis functions.

  16. Astrophysics at n_TOF Facility at CERN

    NASA Astrophysics Data System (ADS)

    Tagliente, G.; Abbondanno, U.; Aerts, G.; Alvarez, H.; Alvarez-Velarde, F.; Andriamonje, S.; Andrzejewski, J.; Audouin, L.; Badurek, G.; Baumann, P.; Bečvář, F.; Belloni, F.; Berthoumieux, E.; Bisterzo, S.; Calviño, F.; Calviani, M.; Cano-Ott, D.; Capote, R.; Carrapiço, C.; Cennini, P.; Chepel, V.; Chiaveri, E.; Colonna, N.; Cortes, G.; Couture, A.; Cox, J.; Dahlfors, M.; David, S.; Dillman, I.; Domingo-Pardo, C.; Dridi, W.; Duran, I.; Eleftheriadis, C.; Embid-Segura, M.; Ferrari, A.; Ferreira-Marques, R.; Fujii, K.; Furman, W.; Gallino, R.; Goncalves, I.; Gonzalez-Romero, E.; Gramegna, F.; Guerrero, C.; Gunsing, F.; Haas, B.; Haight, R.; Heil, M.; Herrera-Martinez, A.; Igashira, M.; Jericha, E.; Käppeler, F.; Kadi, Y.; Karadimos, D.; Karamanis, D.; Kerveno, M.; Koehler, P.; Kossionides, E.; Krtička, M.; Leeb, H.; Lindote, A.; Lopes, I.; Lozano, M.; Lukic, S.; Marganiec, J.; Marrone, S.; Martinez, T.; Massimi, C.; Mastinu, P.; Mengoni, A.; Milazzo, P. M.; Mosconi, M.; Neves, F.; Oberhummer, H.; Pancin, J.; Papachristodoulou, C.; Papadopoulos, C.; Paradela, C.; Patronis, N.; Pavlik, A.; Pavlopoulos, P.; Perrot, L.; Pigni, M. T.; Plag, R.; Plompen, A.; Plukis, A.; Poch, A.; Praena, J.; Pretel, C.; Quesada, J.; Rauscher, T.; Reifarth, R.; Rubbia, C.; Rudolf, G.; Rullhusen, P.; Salgado, J.; Santos, C.; Sarchiapone, L.; Savvidis, I.; Stephan, C.; Tain, J. L.; Tassan-Got, L.; Tavora, L.; Terlizzi, R.; Vannini, G.; Vaz, P.; Ventura, A.; Villamarin, D.; Vincente, M. C.; Vlachoudis, V.; Vlastou, R.; Voss, F.; Walter, S.; Wendler, H.; Wiescher, M.; Wisshak, K.

    2011-09-01

    The neutron time of flight (n_TOF) facility at CERN is a spallation neutron source with white neutron energy spectrum (from thermal to several GeV), covering the full energy range of interest for nuclear astrophysics, in particular for measurements of the neutron capture cross section required in s-process nucleosynthesis. This contribution presents an overview on the astrophysical program carried on at the n_TOF facility, the main results and their implications.

  17. Cidofovir Injection

    MedlinePlus

    ... in babies whose mothers received cidofovir injection during pregnancy. You should not use cidofovir injection while you are pregnant or plan to become pregnant unless your doctor decides that this is the best treatment for your condition.Cidofovir injection has caused tumors ...

  18. Albiglutide Injection

    MedlinePlus

    ... blood) when other medications did not control levels well enough. Albiglutide injection is not used to treat type 1 diabetes ( ... does not cure it. Continue to use albiglutide injection even if you feel well. Do not stop using albiglutide injection without talking ...

  19. Nalbuphine Injection

    MedlinePlus

    ... Your doctor may adjust your dose of nalbuphine injection during your treatment, depending on how well your pain is controlled and on the side effects that you experience. Talk to your doctor about how you are feeling ... nalbuphine injection.You may receive nalbuphine injection in a hospital, ...

  20. Liraglutide Injection

    MedlinePlus

    ... blood) when other medications did not control levels well enough. Liraglutide injection (Victoza) is not used to treat type 1 ... does not cure it. Continue to use liraglutide injection even if you feel well. Do not stop using liraglutide injection without talking ...

  1. Meperidine Injection

    MedlinePlus

    ... Your doctor may adjust your dose of meperidine injection during your treatment, depending on how well your pain is controlled and on the side effects that you experience. Talk to your doctor about how you are feeling ... meperidine injection.If you have used meperidine injection for longer ...

  2. Dulaglutide Injection

    MedlinePlus

    ... blood) when other medications did not control levels well enough. Dulaglutide injection is not used to treat type 1 diabetes ( ... does not cure it. Continue to use dulaglutide injection even if you feel well. Do not stop using dulaglutide injection without talking ...

  3. Morphine Injection

    MedlinePlus

    ... Your doctor may adjust your dose of morphine injection during your treatment, depending on how well your pain is controlled and on the side effects that you experience. Talk to your doctor about how you are feeling ... with morphine injection.If you have used morphine injection for longer ...

  4. Busulfan Injection

    MedlinePlus

    Busulfex® Injection ... Busulfan injection is used to treat a certain type of chronic myelogenous leukemia (CML; a type of cancer of ... of 16 doses) before bone marrow transplant.Busulfan injection may cause seizures during therapy with the medication. ...

  5. High-energy collision induced dissociation fragmentation pathways of peptides, probed using a multiturn tandem time-of-flight mass spectrometer 'MULTUM-TOF/TOF'

    SciTech Connect

    Toyoda, Michisato; Giannakopulos, Anastassios E.; Colburn, Alex W.; Derrick, Peter J.

    2007-07-15

    A new multiturn tandem time-of-flight (TOF) mass spectrometer 'MULTUM-TOF/TOF' has been designed and constructed. It consists of a matrix-assisted laser desorption/ionization ion source, a multiturn TOF mass spectrometer, a collision cell, and a quadratic-field ion mirror. The multiturn TOF mass spectrometer can overcome the problem of precursor ion selection in TOF, due to insufficient time separation between two adjacent TOF peaks, by increasing the number of cycles. As a result, the total TOF increases with the increase in resolving power. The quadratic-field ion mirror allows temporal focusing for fragment ions with different kinetic energies. Product ion spectra from monoisotopically selected precursor ions of angiotensin I, substance P, and bradykinin have been obtained. The fragment ions observed are mainly the result of high-energy collision induced dissociation.

  6. Optimization of a MALDI TOF-TOF mass spectrometer for intact protein analysis.

    PubMed

    Liu, Zhaoyang; Schey, Kevin L

    2005-04-01

    A MALDI TOF-TOF instrument was optimized and evaluated for intact protein analysis by tandem mass spectrometry. Ion source voltages and delay times were adjusted to affect an up to a 10-fold improvement in fragment ion yield compared to data obtained using default settings employed in peptide analysis. For large peptides (3-4.5 kDa), up to 90% of all possible b- and y-fragment ions were observed, which provides sufficient information for de novo sequencing and unambiguous protein identification. Product ion signals associated with preferential cleavages C-terminal to aspartic acid and glutamic acid residues and N-terminal to proline residues became dominant with increased protein molecular weight. Matrix effects were also evaluated and, among the eight matrices examined, alpha-cyano-4-hydroxycinnamic acid (CHCA) was found to produce the best intact protein tandem mass spectra for proteins up to 12 kDa. Optimized performance yielded detection limits of 50-125 fmol for proteins of 4 and 12 kDa, respectively. This improved performance has yielded an instrument with potential to be a useful tool in proteomic investigations via analysis of intact proteins.

  7. High-Energy Collision-Induced Dissociation by MALDI TOF/TOF Causes Charge-Remote Fragmentation of Steroid Sulfates

    NASA Astrophysics Data System (ADS)

    Yan, Yuetian; Ubukata, Masaaki; Cody, Robert B.; Holy, Timothy E.; Gross, Michael L.

    2014-08-01

    A method for structural elucidation of biomolecules dating to the 1980s utilized high-energy collisions (~10 keV, laboratory frame) that induced charge-remote fragmentations (CRF), a class of fragmentations particularly informative for lipids, steroids, surfactants, and peptides. Unfortunately, the capability for high-energy activation has largely disappeared with the demise of magnetic sector instruments. With the latest designs of tandem time-of-flight mass spectrometers (TOF/TOF), however, this capability is now being restored to coincide with the renewed interest in metabolites and lipids, including steroid-sulfates and other steroid metabolites. For these metabolites, structure determinations are required at concentration levels below that appropriate for NMR. To meet this need, we explored CRF with TOF/TOF mass spectrometry for two groups of steroid sulfates, 3-sulfates and 21-sulfates. We demonstrated that the current generation of MALDI TOF/TOF instruments can generate charge-remote fragmentations for these materials. The resulting collision-induced dissociation (CID) spectra are useful for positional isomer differentiation and very often allow the complete structure determination of the steroid. We also propose a new nomenclature that directly indicates the cleavage sites on the steroid ring with carbon numbers.

  8. MALDI TOF/TOF-Based Approach for the Identification of d- Amino Acids in Biologically Active Peptides and Proteins.

    PubMed

    Koehbach, Johannes; Gruber, Christian W; Becker, Christian; Kreil, David P; Jilek, Alexander

    2016-05-06

    Several biologically active peptides contain a d- amino acid in a well-defined position, which is position 2 in all peptide epimers isolated to date from vertebrates and also some from invertebrates. The detection of such D- residues by standard analytical techniques is challenging. In tandem mass spectrometric (MS) analysis, although fragment masses are the same for all stereoisomers, peak intensities are known to depend on chirality. Here, we observe that the effect of a d- amino acid in the second N-terminal position on the fragmentation pattern in matrix assisted laser desorption time-of-flight spectrometry (MALDI-TOF/TOF MS) strongly depends on the peptide sequence. Stereosensitive fragmentation (SF) is correlated to a neighborhood effect, but the d- residue also exerts an overall effect influencing distant bonds. In a fingerprint analysis, multiple peaks can thus serve to identify the chirality of a sample in short time and potentially high throughput. Problematic variations between individual spots could be successfully suppressed by cospotting deuterated analogues of the epimers. By identifying the [d-Leu2] isomer of the predicted peptide GH-2 (gene derived bombininH) in skin secretions of the toad Bombina orientalis, we demonstrated the analytical power of SF-MALDI-TOF/TOF measurements. In conclusion, SF-MALDI-TOF/TOF MS combines high sensitivity, versatility, and the ability to complement other methods.

  9. High-energy collision-induced dissociation by MALDI TOF/TOF causes charge-remote fragmentation of steroid sulfates.

    PubMed

    Yan, Yuetian; Ubukata, Masaaki; Cody, Robert B; Holy, Timothy E; Gross, Michael L

    2014-08-01

    A method for structural elucidation of biomolecules dating to the 1980s utilized high-energy collisions (~10 keV, laboratory frame) that induced charge-remote fragmentations (CRF), a class of fragmentations particularly informative for lipids, steroids, surfactants, and peptides. Unfortunately, the capability for high-energy activation has largely disappeared with the demise of magnetic sector instruments. With the latest designs of tandem time-of-flight mass spectrometers (TOF/TOF), however, this capability is now being restored to coincide with the renewed interest in metabolites and lipids, including steroid-sulfates and other steroid metabolites. For these metabolites, structure determinations are required at concentration levels below that appropriate for NMR. To meet this need, we explored CRF with TOF/TOF mass spectrometry for two groups of steroid sulfates, 3-sulfates and 21-sulfates. We demonstrated that the current generation of MALDI TOF/TOF instruments can generate charge-remote fragmentations for these materials. The resulting collision-induced dissociation (CID) spectra are useful for positional isomer differentiation and very often allow the complete structure determination of the steroid. We also propose a new nomenclature that directly indicates the cleavage sites on the steroid ring with carbon numbers.

  10. MALDI TOF/TOF-Based Approach for the Identification of d- Amino Acids in Biologically Active Peptides and Proteins

    PubMed Central

    2016-01-01

    Several biologically active peptides contain a d- amino acid in a well-defined position, which is position 2 in all peptide epimers isolated to date from vertebrates and also some from invertebrates. The detection of such D- residues by standard analytical techniques is challenging. In tandem mass spectrometric (MS) analysis, although fragment masses are the same for all stereoisomers, peak intensities are known to depend on chirality. Here, we observe that the effect of a d- amino acid in the second N-terminal position on the fragmentation pattern in matrix assisted laser desorption time-of-flight spectrometry (MALDI-TOF/TOF MS) strongly depends on the peptide sequence. Stereosensitive fragmentation (SF) is correlated to a neighborhood effect, but the d- residue also exerts an overall effect influencing distant bonds. In a fingerprint analysis, multiple peaks can thus serve to identify the chirality of a sample in short time and potentially high throughput. Problematic variations between individual spots could be successfully suppressed by cospotting deuterated analogues of the epimers. By identifying the [d-Leu2] isomer of the predicted peptide GH-2 (gene derived bombininH) in skin secretions of the toad Bombina orientalis, we demonstrated the analytical power of SF-MALDI-TOF/TOF measurements. In conclusion, SF-MALDI-TOF/TOF MS combines high sensitivity, versatility, and the ability to complement other methods. PMID:26985971

  11. A high-performance matrix-assisted laser desorption/ionization orthogonal time-of-flight mass spectrometer with collisional cooling.

    PubMed

    Loboda, A V; Ackloo, S; Chernushevich, I V

    2003-01-01

    A high-performance orthogonal time-of-flight (TOF) mass spectrometer was developed specifically for use in combination with a matrix-assisted laser desorption/ionization (MALDI) source. The MALDI source features an ionization region containing a buffer gas with variable pressure. The source is interfaced to the TOF section via a collisional focusing ion guide. The pressure in the source influences the rate of cooling and allows control of ion fragmentation. The instrument provides uniform resolution up to 18,000 FWHM (full width at half maximum). Mass accuracy routinely achieved with a single-point internal recalibration is below 2 ppm for protein digest samples. The instrument is also capable of recording spectra of samples containing compounds with a broad range of masses while using one set of experimental conditions and without compromising resolution or mass accuracy.

  12. Numerical simulation on semi-solid die-casting of magnesium matrix composite based on orthogonal experiment

    NASA Astrophysics Data System (ADS)

    Liu, Huihui; He, Xiongwei; Guo, Peng

    2017-04-01

    Three factors (pouring temperature, injection speed and mold temperature) were selected to do three levels L9 (33)orthogonal experiment, then simulate processing of semi-solid die-casting of magnesium matrix composite by Flow-3D software. The stress distribution, temperature field and defect distribution of filling process were analyzed to find the optimized processing parameter with the help of orthogonal experiment. The results showed that semi-solid has some advantages of well-proportioned stress and temperature field, less defect concentrated in the surface. The results of simulation were the same as the experimental results.

  13. Quantitation using GC-TOF-MS: example of bromazepam.

    PubMed

    Aebi, B; Sturny-Jungo, R; Bernhard, W; Blanke, R; Hirsch, R

    2002-08-14

    Time-of-flight mass spectrometry (TOF-MS) offers new perspectives for forensic toxicology. Qualitative and quantitative analyses of a mixture of three selected benzodiazepines (diazepam, nordazepam and bromazepam) were used to compare gas chromatography (GC-TOF-MS, quadrupole GC-MS, GC-ECD) and liquid chromatography (HPLC-DAD) data. Method validation parameters like LOD, LOQ, S/N-ratios reflect the capabilities of GC-TOF-MS. Five-point calibrations for bromazepam in human peripheral blood (50, 100, 160, 200, 300 ng/ml) using medazepam as internal standard (1000 ng/ml) were performed. The calibrations using GC-TOF-MS (using the fragments of m/z 236 and 288), GC-ECD (dual system) and HPLC-DAD (at 235 nm) all showed correlation coefficients close or superior to 0.99. Quadrupole GC-MS data was not used in the comparison of extracted samples due to the low sensitivity in the full scan mode. Two analyses of real cases concerning bromazepam are presented. In the first case, the presence or absence of bromazepam could not be established with both HPLC-DAD and GC-ECD due to background signals. The extracted ion chromatograms and spectrum traces after the analysis with the GC-TOF-MS could clearly excluded the presence of bromazepam. The second case illustrates the quantitation of bromazepam, where both HPLC-DAD and GC-ECD were unable to give satisfactory results, again due to interfering background signals. The analyses performed on the GC-TOF-MS-system demonstrated high sensitivity and also high selectivity due to the high quality of mass spectra obtained. The advantages of GC-TOF-MS make it a promising analytical technique for forensic toxicology.

  14. Reciprocity and orthogonality relations for ring resonators

    SciTech Connect

    Wright, E.M.; Obrien, D.P.

    1984-12-01

    A general and rigorous derivation of the reciprocity and orthogonality relations for ring resonators is given without resorting to matrix representations. The general form of the integral equations appropriate to the study of ring resonators containing at least one hard aperture is discussed, and a reciprocity relation for a very general class of ring resonator is established using a theorem concerning so-called Hilbert-Schmidt kernels. It is shown that under very general conditions linear ring resonators are reciprocal and that the transverse eigenmodes for propagation in any direction around the resonator are biorthogonal to those for propagation in the opposite direction. 17 references.

  15. Proper orthogonal decomposition of solar photospheric motions.

    PubMed

    Vecchio, A; Carbone, V; Lepreti, F; Primavera, L; Sorriso-Valvo, L; Veltri, P; Alfonsi, G; Straus, Th

    2005-08-05

    The spatiotemporal dynamics of the solar photosphere is studied by performing a proper orthogonal decomposition (POD) of line of sight velocity fields computed from high resolution data coming from the MDI/SOHO instrument. Using this technique, we are able to identify and characterize the different dynamical regimes acting in the system. Low-frequency oscillations, with frequencies in the range 20-130 microHz, dominate the most energetic POD modes (excluding solar rotation), and are characterized by spatial patterns with typical scales of about 3 Mm. Patterns with larger typical scales of approximately 10 Mm, are associated to p-modes oscillations at frequencies of about 3000 microHz.

  16. Tunable RF Cavities Using Orthogonally Biased Ferrite

    SciTech Connect

    Johnson, R.P.; Alsharo'a, M.; Ankenbrandt, C.M.; Entchevitch, I.; Griffin, J.E.; Moretti, A.; Popovic, M.; Tomlin, R.; /Fermilab

    2009-05-01

    Originally conceived as a solution for FFAG applications, a new compact RF cavity design that tunes rapidly over various frequency ranges can be used to upgrade existing machines. The design being developed uses orthogonally biased garnet cores for fast frequency tuning and liquid dielectric to adjust the frequency range and to control the core temperature. We describe measurements of candidate ferrite and dielectric materials. The first use of the new cavity concept will be for improvements to the 8 GeV Fermilab Booster synchrotron.

  17. Orthogonal Synthesis of Xeno Nucleic Acids.

    PubMed

    Fiers, Guillaume; Chouikhi, Dalila; Oswald, Laurence; Al Ouahabi, Abdelaziz; Chan-Seng, Delphine; Charles, Laurence; Lutz, Jean-François

    2016-12-12

    Sequence-defined peptide triazole nucleic acids (PTzNA) were synthesized by means of a solid-phase orthogonal "AB+CD" iterative strategy. In this approach, AB and CD building blocks containing carboxylic acid (A), azide (B), alkyne (C), and primary amine (D) functions are assembled together by successive copper-catalyzed azide-alkyne cycloaddition (CuAAC) and acid-amine coupling steps. Different PTzNA genetic sequences were prepared using a library of eight building blocks (i.e., four AB and four CD building blocks).

  18. Discriminating orthogonal single-photon images

    NASA Astrophysics Data System (ADS)

    Broadbent, Curtis J.; Zerom, Petros; Shin, Heedeuk; Howell, John C.; Boyd, Robert W.

    2009-03-01

    We can encode an image from an orthogonal basis set onto a single photon from a downconverted pair via the use of an amplitude mask. We can then discriminate the image imprinted on the photon from other images in the set using holographic-matched filtering techniques. We demonstrate this procedure experimentally for an image space of two objects, and we discuss the possibility of applying this method to a much larger image space. This process could have important implications for the manipulation of images at the quantum level.

  19. Intensity correlation of orthogonally crossed speckle waves

    NASA Astrophysics Data System (ADS)

    Okamoto, Takashi

    2006-05-01

    The statistical properties of three-dimensional laser speckles formed with orthogonally crossed multiple speckle waves are studied theoretically. The analytical expressions for the first and second order statistics of the crossed speckle fields are derived, and the theoretical results are verified by means of computer simulations. In the simulations, fractal speckles are also analyzed to examine the self-similar properties of the resulting field. The correlation properties of clipped speckles are investigated to explore the possibility of fabricating fractal random media by means of photopolymerization for three-dimensional patterning of micro structures.

  20. Experiment research on orthogonal tilting scanner

    NASA Astrophysics Data System (ADS)

    Li, Anhu; Liu, Liren; Sun, Jianfeng; Zhong, Xianghong; Luan, Zhu

    2007-09-01

    The original scanner of tilting orthogonal double prisms is studied for testing the tracking performance in inter-satellite laser communications. Two prisms respectively rotate around the horizontal axle and the vertical one within the admissible range to determine the corresponding orientation and position of the passing beam, therefore the high accuracy deviation angle of passing beam can be performed. The test experiments performed with autocollimator and interferometer, as well as the theoretical analysis, indicates that the scanner can meet the requirements of the deviation accuracy superior to 0.5 μrad with the deviation range greater than 500 μrad, which accords to our design requirements.

  1. Noncommutative Pfaffians associated with the orthogonal algebra

    SciTech Connect

    Artamonov, Dmitrii V; Golubeva, Valentina A

    2012-12-31

    Commutators of Pfaffians associated with the orthogonal algebra are found in skew-symmetric and root realizations of o{sub N}. A generating function of Pfaffians is proved to satisfy the reflection equation. A relation between Pfaffians in skew-symmetric and root realizations of o{sub N} is established. Using these results we construct an integrable equation of Knizhnik-Zamolodchikov type using the Capelli central elements in U(o{sub N}), which are sums of squares of the considered Pfaffians. A classical limit of the obtained Knizhnik-Zamolodchikov type equation turns out to be a very specific system of equations of isomonodromic deformations. Bibliography: 18 titles.

  2. Tracking Invisible Transformations of Physisorbed Monolayers: LDI-TOF and MALDI-TOF Mass Spectrometry as Complements to STM Imaging.

    PubMed

    He, Jian; Fang, Chen; Shelp, Russell A; Zimmt, Matthew B

    2017-01-17

    Triphenyleneethynylene (TPEE) derivatives bearing one long aliphatic chain on each terminal aryl ring and two short aliphatic chains on the central aryl ring (core chains) self-assemble single component and 1-D patterned, two-component, crystalline monolayers at the solution-graphite interface. The monolayer morphology directs the core chains off the graphite, making them accessible for chemical reactions but invisible to imaging by scanning tunneling microscopy (STM). This precludes using STM to monitor transformations of the core chains, either by reaction or solution-monolayer exchange of TPEE molecules. Laser desorption/ionization time-of-flight mass spectrometry (LDI-TOF MS) successfully identifies TPEE compounds within physisorbed monolayers. The LDI-TOF spectra of TPEE monolayer-graphite samples exhibit strong molecular ion peaks and minimal fragmentation or background. LDI-TOF and STM techniques are combined to evaluate monolayer composition and morphology, track solution-monolayer exchange, to identify reaction products and to measure kinetics of chemical reactions at the solution-monolayer interface. LDI-TOF MS provides rapid qualitative evaluation of monolayer composition across a graphite substrate. Challenges to quantitative composition evaluation by LDI-TOF include compound-specific light absorption, surface desorption/ionization and fragmentation characteristics. For some, but not all, compounds, applying matrix onto a self-assembled monolayer increases molecular ion intensities and affords more accurate assessment of monolayer composition via matrix assisted laser desorption/ionization (MALDI) MS. Matrix addition precludes subsequent chemical or STM studies of the monolayer, whereas reactions and STM may be performed at nonirradiated regions following LDI-TOF measurements. LDI- and MALDI-TOF MS are useful complements to STM and are easily implemented tools for study of physisorbed monolayers.

  3. Orthogonal optical label swapping and novel BER algorithm for 8PSK signal

    NASA Astrophysics Data System (ADS)

    Tang, Chanjuan; Tao, Li; Li, Rongling; Fang, Wuliang; Zou, Shumin; Chi, Nan

    2011-12-01

    For the first time, we propose a novel BER estimation algorithm for 8PSK signal, the idea of which is also applicable to other multi-dimensional and multi-level modulation formats. And a 2 × 4 orthogonal optical label swapping based on 120Gb/s 8PSK payload and 78Mb/s ASK label by using optical switching devices is demonstrated. Through numerical simulations under different circumstances, we get some orthogonal label switching network's characteristics by analyzing the receiver BER utilizing the new BER algorithm, such as that different combination of label will have a different impact on the transmission performance of the packets. In addition, by changing the receiver optical power, transmitter optical power and optical power launched into the fiber, we get the system's receiver sensitivity, the optimum transmitter power and optimum optical power injected into the fiber, which will be a reference for the actual systems' design.

  4. GC-TOF/MS-based metabolomics approach to study the cellular immunotoxicity of deoxynivalenol on murine macrophage ANA-1 cells.

    PubMed

    Ji, Jian; Sun, Jiadi; Pi, Fuwei; Zhang, Shuang; Sun, Chao; Wang, Xiumei; Zhang, Yinzhi; Sun, Xiulan

    2016-08-25

    Gas chromatography-time of fly/mass spectrum (GC-TOF/MS) based complete murine macrophage ANA-1 cell metabolome strategy, including the endo-metabolome and the exo-metabolome, ANA-1 cell viability assays and apoptosis induced by diverse concentrations of DON were evaluated for selection of an optimized dose for in-depth metabolomic research. Using the optimized chromatography and mass spectrometry parameters, the metabolites detected by GC-TOF/MS were identified and processed with multivariate statistical analysis, including principal componentanalysis (PCA) and orthogonal projection to latent structures-discriminant analysis (OPLS-DA) analysis. The data sets were screened with a t-test (P) value < 0.05, VIP value > 1, similarity value > 500, leaving 16 exo-metabolite variables and 11 endo-metabolite variables for further pathway analysis. Implementing the integration of key metabolic pathways, the metabolism pathways were categorized into two dominating types, metabolism of amino acid and glycometabolism. Glycine, serine and threonine metabolism, phenylalanine, tyrosine and tryptophan biosynthesis and phenylalanine metabolism were the significant amino acids affected by the metabolic pathways, indicating statistically significant fold changes including pyruvate, serine, glycine, lactate and threonine. Glycolysis or gluconeogenesis, starch and sucrose metabolism, and galactose metabolism, belonging to glycometabolism, were the pathways that were found to be primarily affected, resulting in abnormal metabolites such as glucose-1P, Glucose, gluconic acid, myo-inositol, sorbitol and glycerol.

  5. Discovery of human urinary biomarkers of aronia-citrus juice intake by HPLC-q-TOF-based metabolomic approach.

    PubMed

    Llorach, Rafael; Medina, Sonia; García-Viguera, Cristina; Zafrilla, Pilar; Abellán, José; Jauregui, Olga; Tomás-Barberán, Francisco A; Gil-Izquierdo, Angel; Andrés-Lacueva, Cristina

    2014-06-01

    Metabolomics has emerged in the field of food and nutrition sciences as a powerful tool for doing profiling approaches. In this context, HPLC-q-TOF-based metabolomics approach was applied to unveil changes in the urinary metabolome in human subjects (n = 51, 23 men and 28 women) after regular aronia-citrus juice (AC-juice) intake (250 mL/day) during 16 weeks compared to individuals given a placebo beverage. Samples were analyzed by HPLC-q-TOF followed by multivariate data analysis (orthogonal signal filtering-partial least square discriminant analysis) that discriminated relevant mass features related to AC-juice intake. The results showed that biomarkers of AC-juice intake including metabolites coming from metabolism of food components as proline betaine, ferulic acid, and two unknown mercapturate derivatives were identified. Discovery of new biomarkers of food intake will help in the building up of the food metabolome and facilitate future insights into the mechanisms of action of dietary components in population health. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  6. Orthogonally-oriented nanotube arrays: experiment I.

    PubMed

    Sheehan, D P; Webster, J T; Baird, L M

    2007-10-01

    Recently a new type of self-assembling surface has been proposed that, in theory, possesses a number of desirable tribological, electrical, and thermal characterstics. The surface consists of arrays of carbon nanotubes partially embedded lengthwise in a substrate such that when two arrayed surfaces are brought together orthogonally, the areal contact between them is small, limited to a lattice of nearly point-like contacts. These orthogonally-oriented nanotube arrays (ONAs) are predicted to exhibit: (i) surface adhesion (stiction) 10-100 times less than for Teflon or other advanced perfluorocarbons; (ii) frictional coefficients up to 1000 times less than for conventional solids; (iii) ultra-low wear; and (iv) superior thermal and electrical conductivity. In this paper, laboratory methods are described for embedding nanotubes in trenched substrates. Using microscopically trenched substrates and a custom ultrasonic atomization source, experiments show that individual nanotubes can spontaneously and controllably entrench themselves via interfacial forces (capillary and surface tension). Results indicate ONAs might be relatively simply and inexpensively fabricated. More decisive experiments are proposed.

  7. Hydromorphone Injection

    MedlinePlus

    ... Your doctor may adjust your dose of hydromorphone injection during your treatment, depending on how well your pain is controlled and on the side ... to have pain after you finish the hydromorphone injection, call your doctor.It ... you are taking, as well as any products such as vitamins, minerals, or ...

  8. Ixabepilone Injection

    MedlinePlus

    ... doctor will order laboratory tests to see how well your liver is working before and during your treatment. If the tests show that you have liver problems, your doctor will probably not give you ixabepilone injection and capecitabine (Xeloda). Treatment with both ixabepilone injection ...

  9. Romidepsin Injection

    MedlinePlus

    ... group of cancers of the immune system that first appear as skin rashes) in people who have already been treated with at least one other medication given by mouth or by injection. Romidepsin injection is in a class of medications called histone deacetylase (HDAC) inhibitors. It ...

  10. Nusinersen Injection

    MedlinePlus

    Nusinersen injection is used for the treatment of spinal muscular atrophy (an inherited condition that reduces muscle strength and movement). Nusinersen injection is in a class of medications called antisense ... a certain protein necessary for the muscles and nerves to work normally.

  11. Musculoskeletal Injection

    PubMed Central

    Wittich, Christopher M.; Ficalora, Robert D.; Mason, Thomas G.; Beckman, Thomas J.

    2009-01-01

    Patients commonly present to primary care physicians with musculoskeletal symptoms. Clinicians certified in internal medicine must be knowledgeable about the diagnosis and management of musculoskeletal diseases, yet they often receive inadequate postgraduate training on this topic. The musculoskeletal problems most frequently encountered in our busy injection practice involve, in decreasing order, the knees, trochanteric bursae, and glenohumeral joints. This article reviews the clinical presentations of these problems. It also discusses musculoskeletal injections for these problems in terms of medications, indications, injection technique, and supporting evidence from the literature. Experience with joint injection and the pharmacological principles described in this article should allow primary care physicians to become comfortable and proficient with musculoskeletal injections. PMID:19720781

  12. Cosensitized Porphyrin System for High-Performance Solar Cells with TOF-SIMS Analysis.

    PubMed

    Wu, Wenjun; Xiang, Huaide; Fan, Wei; Wang, Jinglin; Wang, Haifeng; Hua, Xin; Wang, Zhaohui; Long, Yitao; Tian, He; Zhu, Wei-Hong

    2017-05-17

    To date, development of organic sensitizers has been predominately focused on light harvesting, highest occupied molecular orbital and lowest unoccupied molecular orbital energy levels, and the electron transferring process. In contrast, their adsorption mode as well as the dynamic loading behavior onto nanoporous TiO2 is rarely considered. Herein, we have employed the time-of-flight secondary ion mass spectrometry (TOF-SIMS) to gain insight into the competitive dye adsorption mode and kinetics in the cosensitized porphyrin system. Using novel porphyrin dye FW-1 and D-A-π-A featured dye WS-5, the different bond-breaking mode in TOF-SIMS and dynamic dye-loading amount during the coadsorption process are well-compared with two different anchoring groups, such as benzoic acid and cyanoacrylic acid. With the bombardment mode in TOF-SIMS spectra, we have speculated that the cyano group grafts onto nanoporous TiO2 as tridentate binding for the common anchoring unit of cyanoacrylic acid and confirmed it through extensive first-principles density functional theory calculation by anchoring either the carboxyl or cyano group, which shows that the cyano group can efficiently participate in the adsorption of the WS-5 molecule onto the TiO2 nanocrystal. The grafting reinforcement interaction between the cyano group and TiO2 in WS-5 can well-explain the rapid adsorption characteristics. A strong coordinate bond between the lone pair of electrons on the nitrogen or oxygen atom and the Lewis acid sites of TiO2 can increase electron injection efficiencies with respect to those from the bond between the benzoic acid group and the Brønsted acid sites of the TiO2 surface. Upon optimization of the coadsorption process with dye WS-5, the photoelectric conversion efficiency based on porphyrin dye FW-1 is increased from 6.14 to 9.72%. The study on the adsorption dynamics of organic sensitizers with TOF-SIMS analysis might provide a new venue for improvement of cosensitized solar cells.

  13. [Applications of MALDI-TOF technology in clinical microbiology].

    PubMed

    Suarez, S; Nassif, X; Ferroni, A

    2015-02-01

    Until now, the identification of micro-organisms has been based on the cultural and biochemical characteristics of bacterial and fungal species. Recently, Mass Spectrometry type Matrix-Assisted Laser Desorption Ionization-Time of Flight (MALDI-TOF MS) was developed in clinical microbiology laboratories. This new technology allows identification of micro-organisms directly from colonies of bacteria and fungi within few minutes. In addition, it can be used to identify germs directly from positive blood culture bottles or directly from urine samples. Other ways are being explored to expand the use of MALDI-TOF in clinical microbiology laboratories. Indeed, some studies propose to detect bacterial antibiotic resistance while others compare strains within species for faster strain typing. The main objective of this review is to update data from the recent literature for different applications of MALDI-TOF technique in microbiological diagnostic routine.

  14. MALDI-TOF-mass spectrometry applications in clinical microbiology.

    PubMed

    Seng, Piseth; Rolain, Jean-Marc; Fournier, Pierre Edouard; La Scola, Bernard; Drancourt, Michel; Raoult, Didier

    2010-11-01

    MALDI-TOF-mass spectrometry (MS) has been successfully adapted for the routine identification of microorganisms in clinical microbiology laboratories in the past 10 years. This revolutionary technique allows for easier and faster diagnosis of human pathogens than conventional phenotypic and molecular identification methods, with unquestionable reliability and cost-effectiveness. This article will review the application of MALDI-TOF-MS tools in routine clinical diagnosis, including the identification of bacteria at the species, subspecies, strain and lineage levels, and the identification of bacterial toxins and antibiotic-resistance type. We will also discuss the application of MALDI-TOF-MS tools in the identification of Archaea, eukaryotes and viruses. Pathogenic identification from colony-cultured, blood-cultured, urine and environmental samples is also reviewed.

  15. 3D object recognition in TOF data sets

    NASA Astrophysics Data System (ADS)

    Hess, Holger; Albrecht, Martin; Grothof, Markus; Hussmann, Stephan; Oikonomidis, Nikolaos; Schwarte, Rudolf

    2003-08-01

    In the last years 3D-Vision systems based on the Time-Of-Flight (TOF) principle have gained more importance than Stereo Vision (SV). TOF offers a direct depth-data acquisition, whereas SV involves a great amount of computational power for a comparable 3D data set. Due to the enormous progress in TOF-techniques, nowadays 3D cameras can be manufactured and be used for many practical applications. Hence there is a great demand for new accurate algorithms for 3D object recognition and classification. This paper presents a new strategy and algorithm designed for a fast and solid object classification. A challenging example - accurate classification of a (half-) sphere - demonstrates the performance of the developed algorithm. Finally, the transition from a general model of the system to specific applications such as Intelligent Airbag Control and Robot Assistance in Surgery are introduced. The paper concludes with the current research results in the above mentioned fields.

  16. Corynebacterium propinquum Keratitis Identified Using MALDI-TOF.

    PubMed

    Badenoch, Paul R; OʼDaniel, Lisa J; Wise, Rolf P; Slattery, James A; Mills, Richard A

    2016-05-01

    To report a corneal infection due to Corynebacterium propinquum identified using the matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) method. A 94-year-old woman presented with suppurative keratitis. Her ocular history included Fuchs corneal dystrophy, corneal transplantation, and glaucoma. A gram-stained smear revealed coryneforms. Colonies on bacterial culture media were assayed by MALDI-TOF. Identification of C. propinquum was confirmed by RNA polymerase β subunit (rpoB) gene sequencing. The patient was treated with topical cefazolin, gentamicin, and fluorometholone, and her vision improved to 20/160 unaided when last seen. MALDI-TOF can correctly identify isolates that are both uncommon and difficult to distinguish from related species. The ease and low running costs of this method will improve the laboratory diagnosis of ocular infections.

  17. The application of MALDI TOF MS in biopharmaceutical research.

    PubMed

    Kafka, Alexandra P; Kleffmann, Torsten; Rades, Thomas; McDowell, Arlene

    2011-09-30

    The development and quality assessment of modern biopharmaceuticals, particularly protein and peptide drugs, requires an array of analytical techniques to assess the integrity of the bioactive molecule during formulation and administration. Mass spectrometry is one of these methods and is particularly suitable for determining chemical modifications of protein and peptide drugs. The emphasis of this review is the identification of covalent interactions between protein and peptide bioactives with polymeric pharmaceutical formulations using mass spectrometry with the main focus on matrix-assisted laser desorption/ionization (MALDI) coupled tandem time-of-flight (TOF/TOF) mass spectrometry (MS). The basics of MALDI TOF MS and collision-induced dissociation (CID)-based ion fragmentation will be explained and applications for qualitative characterization of protein and peptide drugs and their interactions with pharmaceutical polymers will be discussed using three case studies. Copyright © 2011 Elsevier B.V. All rights reserved.

  18. The electronics for TOF system of the CMD-3 detector

    NASA Astrophysics Data System (ADS)

    Kozyrev, A. N.; Ruban, A. A.; Amerhanov, A. N.; Fedotovich, G. V.; Gribanov, S. S.; Popov, A. S.; Ryskulov, N. M.; Ryzhenenkov, A. E.; Shemyakin, D. N.; Tolmachev, S. S.

    2017-07-01

    The time-of-flight (TOF) system now is installed at the CMD-3 detector of the VEPP-2000 electron-positron collider at the Budker Institute of Nuclear Physics. It is based on the strips of organic scintillator with shifter fibers readout and silicon photomultiplier (SiPM) photodetectors. The new electronics for TOF system is designed at the Budker Institute of Nuclear Physics. The main feature of the new electronics is usage a ripple-free technology for providing a bias voltage for SiPM photodetectors. Also this design has very low power consumption. It allows the individual controlled bias voltage generator to be integrated to front-end electronics, near the photodetectors. In this paper the structure of the TOF electronic hardware is described.

  19. Identification of flea species using MALDI-TOF/MS.

    PubMed

    Yssouf, Amina; Socolovschi, Cristina; Leulmi, Hamza; Kernif, Tahar; Bitam, Idir; Audoly, Gilles; Almeras, Lionel; Raoult, Didier; Parola, Philippe

    2014-05-01

    In the present study, a molecular proteomics (MALDI-TOF/MS) approach was used as a tool for identifying flea vectors. We measured the MS spectra from 38 flea specimens of 5 species including Ctenocephalides felis, Ctenocephalides canis, Archaeopsylla erinacei, Xenopsylla cheopis and Stenoponia tripectinata. A blind test performed with 24 specimens from species included in a library spectral database confirmed that MALDI-TOF/MS is an effective tool for discriminating flea species. Although fresh and 70% ethanol-conserved samples subjected to MALDI-TOF/MS in blind tests were correctly classified, only MS spectra of quality from fresh specimens were sufficient for accurate and significant identification. A cluster analysis highlighted that the MALDI Biotyper can be used for studying the phylogeny of fleas.

  20. Speciation of surface gold in pressure oxidized carbonaceous gold ores by TOF-SIMS and TOF-LIMS

    NASA Astrophysics Data System (ADS)

    Dimov, S. S.; Chryssoulis, S. L.; Sodhi, R. N.

    2003-01-01

    To the best of our knowledge, this is the first attempt ever to speciate gold preg-robbed by carbonaceous matter using a surface sensitive microbeam technique. This approach enables the direct determination of gold species sorbed on carbonaceous particulates thus providing a new tool in understanding the chemistry of gold sorption on carbon. The reasoning behind this effort was to study the detrimental effect chloride ions have on gold recovery by pressure oxidation of carbonaceous sulfide ores, a technology largely used by the mining industry. The characterization of the sorbed gold species involved three surface sensitive microbeam analytical techniques (TOF-SIMS, TOF-LIMS and XPS) providing confirmatory results for better accuracy. Optimum conditions for detection of gold compounds with minimum fragmentation by TOF-SIMS and TOF-LIMS mass spectrometers have been determined. A reference library of 16 major gold complexes with halogen, thiosulfate, cyanide and thiocyanate groups relevant to the gold recovery processes has been established. The most suitable of the microbeam techniques tested was found to be negative (-ve) ion TOF-LIMS, offering best sensitivity and a small analytical spot size.

  1. Differentiation of isomeric N-glycan structures by normal-phase liquid chromatography-MALDI-TOF/TOF tandem mass spectrometry.

    PubMed

    Maslen, Sarah; Sadowski, Pawel; Adam, Alex; Lilley, Kathryn; Stephens, Elaine

    2006-12-15

    The detailed characterization of protein N-glycosylation is very demanding given the many different glycoforms and structural isomers that can exist on glycoproteins. Here we report a fast and sensitive method for the extensive structure elucidation of reducing-end labeled N-glycan mixtures using a combination of capillary normal-phase HPLC coupled off-line to matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS) and TOF/TOF-MS/MS. Using this method, isobaric N-glycans released from honey bee phospholipase A2 and Arabidopsis thaliana glycoproteins were separated by normal-phase chromatography and subsequently identified by key fragment ions in the MALDI-TOF/TOF tandem mass spectra. In addition, linkage and branching information were provided by abundant cross-ring and "elimination" fragment ions in the MALDI-CID spectra that gave extensive structural information. Furthermore, the fragmentation characteristics of N-glycans reductively aminated with 2-aminobenzoic acid and 2-aminobenzamide were compared. The identification of N-glycans containing 3-linked core fucose was facilitated by distinctive ions present only in the MALDI-CID spectra of 2-aminobenzoic acid-labeled oligosaccharides. To our knowledge, this is the first MS/MS-based technique that allows confident identification of N-glycans containing 3-linked core fucose, which is a major allergenic determinant on insect and plant glycoproteins.

  2. Qualitative and quantitative analyses of alkaloids in Uncaria species by UPLC-ESI-Q-TOF/MS.

    PubMed

    Wang, Hai-Bo; Qi, Wen; Zhang, Lin; Yuan, Dan

    2014-01-01

    An ultra performance liquid chromatography (UPLC) coupled with quadrupole time-of-flight mass spectrometry (Q-TOF/MS) method has been optimized and established for the rapid analysis of the alkaloids in 22 samples originating from five Uncaria (U.) species. The accurate mass measurement of all the protonated molecules and subsequent fragment ions offers higher quality structural information for the interpretation of fragmentation pathways of the various groups of alkaloids. A total of 19 oxindole alkaloids, 16 indole alkaloids and 1 flavone were identified by co-chromatography of the sample extract with authentic standards, comparison of the retention time, characteristic molecular ions and fragment ions, or were tentatively identified by MS/MS determination. Moreover, the method was validated for the simultaneous quantification of the 24 components within 10.5 min. The potential chemical markers were identified for classification of the U. species samples by principal component analysis (PCA) and orthogonal partial least squared discriminant analysis (OPLS-DA). The results demonstrate the similarity and differences in alkaloids among the five U. species, which is helpful for the standardization and quality control of the medical materials of the U. Ramulus Cum Unics (URCU). Furthermore, with multivariate statistical analysis, the determined markers are more definite and useful for chemotaxonomy of the U. genus.

  3. Taguchi’s Orthogonal Arrays Are Classical Designs of Experiments

    PubMed Central

    Kacker, Raghu N.; Lagergren, Eric S.; Filliben, James J.

    1991-01-01

    Taguchi’s catalog of orthogonal arrays is based on the mathematical theory of factorial designs and difference sets developed by R. C. Bose and his associates. These arrays evolved as extensions of factorial designs and latin squares. This paper (1) describes the structure and constructions of Taguchi’s orthogonal arrays, (2) illustrates their fractional factorial nature, and (3) points out that Taguchi’s catalog can be expanded to include orthogonal arrays developed since 1960. PMID:28184132

  4. MALDI-TOF MS: a platform technology for genetic discovery

    NASA Astrophysics Data System (ADS)

    Boom, Dirk Van Den; Beaulieu, Martin; Oeth, Paul; Roth, Rich; Honisch, Christiane; Nelson, Matthew R.; Jurinke, Christian; Cantor, Charles

    2004-11-01

    Matrix-assisted laser desorption/ionization (MALDI) time-of-flight (TOF) mass spectrometry (MS) has been applied as a high-throughput platform technology for qualitative and quantitative nucleic acid analysis in the genetic discovery of target genes and their biological validation. Mass spectrometric methods for the elucidation of genetic variability and for subsequent large-scale genotyping of genetic markers are exemplified. The use of quantitative MALDI-TOF MS is described for large-scale validation of SNP markers and their analysis in DNA sample pools. Initial results of genome-wide association studies employing this technology are provided exemplifying a genetics-driven approach to drug discovery.

  5. C60 SIMS with a Hybrid-Quadrupole Orthogonal time-of-flight Mass Spectrometer

    PubMed Central

    Carado, Anthony; Passarelli, M. K.; Kozole, Joseph; Wingate, J. E.; Winograd, Nicholas; Loboda, A. V.

    2009-01-01

    A hybrid quadrupole orthogonal time-of-flight mass spectrometer optimized for MALDI and electrospray ionization has been equipped with a C60 cluster ion source. This configuration is shown to exhibit a number of characteristics that improve the performance of traditional time-of-flight secondary ion mass spectrometry (SIMS) experiments for the analysis of complex organic materials, and potentially, for chemical imaging. Specifically, the primary ion beam is operated as a continuous rather than a pulsed beam, resulting in up to 4 orders of magnitude greater ion fluence on the target. The secondary ions are extracted at very low voltage into 8 millitorr of N2 gas introduced for collisional focusing and cooling purposes. This extraction configuration is shown to yield secondary ions that rapidly lose memory of the mechanism of their birth, yielding tandem mass spectra that are identical for SIMS and MALDI. With implementation of ion trapping, the extraction efficiency is shown to be equivalent to that found in traditional TOF-SIMS machines. Examples are given, for a variety of substrates that illustrate mass resolution of 12,000–15,600 with mass range for inorganic compounds to m/z 40,000. Preliminary chemical mapping experiments show that with added sensitivity, imaging in the MS/MS mode of operation is straightforward. In general, the combination of MALDI and SIMS is shown to add capabilities to each technique, providing a robust platform for TOF-SIMS experiments that already exists in a large number of laboratories. PMID:18844371

  6. Orthogonal fast spherical Bessel transform on uniform grid

    NASA Astrophysics Data System (ADS)

    Serov, Vladislav V.

    2017-07-01

    We propose an algorithm for the orthogonal fast discrete spherical Bessel transform on a uniform grid. Our approach is based upon the spherical Bessel transform factorization into the two subsequent orthogonal transforms, namely the fast Fourier transform and the orthogonal transform founded on the derivatives of the discrete Legendre orthogonal polynomials. The method utility is illustrated by its implementation for the problem of a two-atomic molecule in a time-dependent external field simulating the one utilized in the attosecond streaking technique.

  7. Orthogonal patterns in binary neural networks

    NASA Technical Reports Server (NTRS)

    Baram, Yoram

    1988-01-01

    A binary neural network that stores only mutually orthogonal patterns is shown to converge, when probed by any pattern, to a pattern in the memory space, i.e., the space spanned by the stored patterns. The latter are shown to be the only members of the memory space under a certain coding condition, which allows maximum storage of M=(2N) sup 0.5 patterns, where N is the number of neurons. The stored patterns are shown to have basins of attraction of radius N/(2M), within which errors are corrected with probability 1 in a single update cycle. When the probe falls outside these regions, the error correction capability can still be increased to 1 by repeatedly running the network with the same probe.

  8. Partially orthogonal resonators for magnetic resonance imaging

    NASA Astrophysics Data System (ADS)

    Chacon-Caldera, Jorge; Malzacher, Matthias; Schad, Lothar R.

    2017-02-01

    Resonators for signal reception in magnetic resonance are traditionally planar to restrict coil material and avoid coil losses. Here, we present a novel concept to model resonators partially in a plane with maximum sensitivity to the magnetic resonance signal and partially in an orthogonal plane with reduced signal sensitivity. Thus, properties of individual elements in coil arrays can be modified to optimize physical planar space and increase the sensitivity of the overall array. A particular case of the concept is implemented to decrease H-field destructive interferences in planar concentric in-phase arrays. An increase in signal to noise ratio of approximately 20% was achieved with two resonators placed over approximately the same planar area compared to common approaches at a target depth of 10 cm at 3 Tesla. Improved parallel imaging performance of this configuration is also demonstrated. The concept can be further used to increase coil density.

  9. Measuring the orthogonality error of coil systems

    USGS Publications Warehouse

    Heilig, B.; Csontos, A.; Pajunpää, K.; White, Tim; St. Louis, B.; Calp, D.

    2012-01-01

    Recently, a simple method was proposed for the determination of pitch angle between two coil axes by means of a total field magnetometer. The method is applicable when the homogeneous volume in the centre of the coil system is large enough to accommodate the total field sensor. Orthogonality of calibration coil systems used for calibrating vector magnetometers can be attained by this procedure. In addition, the method can be easily automated and applied to the calibration of delta inclination–delta declination (dIdD) magnetometers. The method was tested by several independent research groups, having a variety of test equipment, and located at differing geomagnetic observatories, including: Nurmijärvi, Finland; Hermanus, South Africa; Ottawa, Canada; Tihany, Hungary. This paper summarizes the test results, and discusses the advantages and limitations of the method.

  10. Response Surface Modeling Using Multivariate Orthogonal Functions

    NASA Technical Reports Server (NTRS)

    Morelli, Eugene A.; DeLoach, Richard

    2001-01-01

    A nonlinear modeling technique was used to characterize response surfaces for non-dimensional longitudinal aerodynamic force and moment coefficients, based on wind tunnel data from a commercial jet transport model. Data were collected using two experimental procedures - one based on modem design of experiments (MDOE), and one using a classical one factor at a time (OFAT) approach. The nonlinear modeling technique used multivariate orthogonal functions generated from the independent variable data as modeling functions in a least squares context to characterize the response surfaces. Model terms were selected automatically using a prediction error metric. Prediction error bounds computed from the modeling data alone were found to be- a good measure of actual prediction error for prediction points within the inference space. Root-mean-square model fit error and prediction error were less than 4 percent of the mean response value in all cases. Efficacy and prediction performance of the response surface models identified from both MDOE and OFAT experiments were investigated.

  11. Inverse solutions for tilting orthogonal double prisms.

    PubMed

    Li, Anhu; Ding, Ye; Bian, Yongming; Liu, Liren

    2014-06-10

    An analytical reverse solution and actual examples are given to show how to direct a laser beam from a pair of orthogonal prisms to given targets in free space. Considering the influences of double-prism structural parameters, a lookup table method to seek the numerical reverse solution of each prism's tilting angle is also proposed for steering the double-prism orientation to track a target position located in the near field. Some case studies, as well as a specified elliptical target trajectory scanned by the cam-based driving double prisms, exhibit the significant application values of the theoretical derivation. The analytic reverse and numerical solutions can be generalized to investigate the synthesis of scanning patterns and the controlling strategy of double-prism tilting motion, the potentials of which can be explored to perform the orientation and position tracking functions in applications of precision engineering fields.

  12. Partially orthogonal resonators for magnetic resonance imaging

    PubMed Central

    Chacon-Caldera, Jorge; Malzacher, Matthias; Schad, Lothar R.

    2017-01-01

    Resonators for signal reception in magnetic resonance are traditionally planar to restrict coil material and avoid coil losses. Here, we present a novel concept to model resonators partially in a plane with maximum sensitivity to the magnetic resonance signal and partially in an orthogonal plane with reduced signal sensitivity. Thus, properties of individual elements in coil arrays can be modified to optimize physical planar space and increase the sensitivity of the overall array. A particular case of the concept is implemented to decrease H-field destructive interferences in planar concentric in-phase arrays. An increase in signal to noise ratio of approximately 20% was achieved with two resonators placed over approximately the same planar area compared to common approaches at a target depth of 10 cm at 3 Tesla. Improved parallel imaging performance of this configuration is also demonstrated. The concept can be further used to increase coil density. PMID:28186135

  13. Partially orthogonal resonators for magnetic resonance imaging.

    PubMed

    Chacon-Caldera, Jorge; Malzacher, Matthias; Schad, Lothar R

    2017-02-10

    Resonators for signal reception in magnetic resonance are traditionally planar to restrict coil material and avoid coil losses. Here, we present a novel concept to model resonators partially in a plane with maximum sensitivity to the magnetic resonance signal and partially in an orthogonal plane with reduced signal sensitivity. Thus, properties of individual elements in coil arrays can be modified to optimize physical planar space and increase the sensitivity of the overall array. A particular case of the concept is implemented to decrease H-field destructive interferences in planar concentric in-phase arrays. An increase in signal to noise ratio of approximately 20% was achieved with two resonators placed over approximately the same planar area compared to common approaches at a target depth of 10 cm at 3 Tesla. Improved parallel imaging performance of this configuration is also demonstrated. The concept can be further used to increase coil density.

  14. Description of sunspot cycles by orthogonal functions

    NASA Technical Reports Server (NTRS)

    Teuber, D. L.; Reichmann, E. J.; Wilson, R. M.

    1984-01-01

    Based on the principal component analysis technique and evidence for a 22-yr double-sunspot cycle periodicity. The time series of sunspot numbers is represented as a sum of mutually orthogonal eigenvectors in the time domain. It is shown that the first two eigenvectors account for about 90 percent of the cumulative 'signal power,' and that this is sufficient for reconstruction of the raw data curve. It is also noted that the second eigenvector behaves as the time derivative of the first, and that a phase-plane plot of these eigenvectors (i.e. a plot of a variable vs. its rate of change) suggests that the sun's sunspot cycle is driven by an oscillator; the implication is that, embedded within the sun, a chronometer is at work (e.g. Dicke, 1979).

  15. Nanomachining of non-orthogonal mask patterns

    NASA Astrophysics Data System (ADS)

    Robinson, Tod; Yi, Daniel; White, Roy; Bozak, Ron; Archuletta, Mike; Lee, David

    2010-05-01

    Patterns which are not aligned to standard orthogonal (x and y ordinate) directions have recently been developed for advanced lithography nodes. Efforts have been successful in developing single pass nanomachining repair processes to meet the printability requirements for these patterns. This development makes use of the latest improvements made to the COBRA repair process (the Enhanced COBRA process typically completed in less than 2 minutes of repair time) with symmetric NanoBits to repair opposing critical edges of bridging defects. It also required fundamental changes in the software tools to allow automated detection of the angle of the edges and the application of pre-programmed repair edge biases normal (90°) to the detected angled edges. Additionally, some other new improvements (hardware, software, and process) are reviewed in light of more traditional nanomachining repairs.

  16. LOCC indistinguishable orthogonal product quantum states

    PubMed Central

    Zhang, Xiaoqian; Tan, Xiaoqing; Weng, Jian; Li, Yongjun

    2016-01-01

    We construct two families of orthogonal product quantum states that cannot be exactly distinguished by local operation and classical communication (LOCC) in the quantum system of 2k+i ⊗ 2l+j (i, j ∈ {0, 1} and i ≥ j ) and 3k+i ⊗ 3l+j (i, j ∈ {0, 1, 2}). And we also give the tiling structure of these two families of quantum product states where the quantum states are unextendible in the first family but are extendible in the second family. Our construction in the quantum system of 3k+i ⊗ 3l+j is more generalized than the other construction such as Wang et al.’s construction and Zhang et al.’s construction, because it contains the quantum system of not only 2k ⊗ 2l and 2k+1 ⊗ 2l but also 2k ⊗ 2l+1 and 2k+1 ⊗ 2l+1. We calculate the non-commutativity to quantify the quantumness of a quantum ensemble for judging the local indistinguishability. We give a general method to judge the indistinguishability of orthogonal product states for our two constructions in this paper. We also extend the dimension of the quantum system of 2k ⊗ 2l in Wang et al.’s paper. Our work is a necessary complement to understand the phenomenon of quantum nonlocality without entanglement. PMID:27377310

  17. LOCC indistinguishable orthogonal product quantum states

    NASA Astrophysics Data System (ADS)

    Zhang, Xiaoqian; Tan, Xiaoqing; Weng, Jian; Li, Yongjun

    2016-07-01

    We construct two families of orthogonal product quantum states that cannot be exactly distinguished by local operation and classical communication (LOCC) in the quantum system of 2k+i ⊗ 2l+j (i, j ∈ {0, 1} and i ≥ j ) and 3k+i ⊗ 3l+j (i, j ∈ {0, 1, 2}). And we also give the tiling structure of these two families of quantum product states where the quantum states are unextendible in the first family but are extendible in the second family. Our construction in the quantum system of 3k+i ⊗ 3l+j is more generalized than the other construction such as Wang et al.’s construction and Zhang et al.’s construction, because it contains the quantum system of not only 2k ⊗ 2l and 2k+1 ⊗ 2l but also 2k ⊗ 2l+1 and 2k+1 ⊗ 2l+1. We calculate the non-commutativity to quantify the quantumness of a quantum ensemble for judging the local indistinguishability. We give a general method to judge the indistinguishability of orthogonal product states for our two constructions in this paper. We also extend the dimension of the quantum system of 2k ⊗ 2l in Wang et al.’s paper. Our work is a necessary complement to understand the phenomenon of quantum nonlocality without entanglement.

  18. Oral Mucosal Injection of a Local Anesthetic Solution Containing Epinephrine Enhances Muscle Relaxant Effects of Rocuronium

    PubMed Central

    Ninomiya, Asako; Terakawa, Yui; Matsuura, Nobuyuki; Ichinohe, Tatsuya; Kaneko, Yuzuru

    2012-01-01

    The purpose of this study was to examine how submucosal injection of a clinically relevant dose of a lidocaine hydrochloride solution containing epinephrine affects the muscle relaxant effects of rocuronium bromide. Sixteen patients scheduled for orthognathic surgery participated in this study. All patients were induced with fentanyl citrate, a target-controlled infusion of propofol and rocuronium bromide. Anesthesia was maintained by total intravenous anesthesia. After nasotracheal intubation, an infusion of rocuronium bromide was started at 7 µg/kg/min, and the infusion rate was then adjusted to maintain a train of four (TOF) ratio at 10 to 15%. The TOF ratio just prior to oral mucosal injection of a 1% lidocaine hydrochloride solution containing 10 µg/mL epinephrine (LE) was taken as the baseline. TOF ratio was observed for 20 minutes, with 1-minute intervals following the start of injection. Mean epinephrine dose was 85.6 ± 18.6 µg and mean infusion rate of rocuronium bromide was 6.3 ± 1.6 µg/kg/min. TOF ratio began to decrease 2 minutes after the injection of LE, reached the minimum value at 3.1 ± 3.6% 12 minutes after the injection, and then began to recover. We conclude that oral mucosal injection of LE enhances the muscle relaxant effects of rocuronium bromide. PMID:22428970

  19. Oral mucosal injection of a local anesthetic solution containing epinephrine enhances muscle relaxant effects of rocuronium.

    PubMed

    Ninomiya, Asako; Terakawa, Yui; Matsuura, Nobuyuki; Ichinohe, Tatsuya; Kaneko, Yuzuru

    2012-01-01

    The purpose of this study was to examine how submucosal injection of a clinically relevant dose of a lidocaine hydrochloride solution containing epinephrine affects the muscle relaxant effects of rocuronium bromide. Sixteen patients scheduled for orthognathic surgery participated in this study. All patients were induced with fentanyl citrate, a target-controlled infusion of propofol and rocuronium bromide. Anesthesia was maintained by total intravenous anesthesia. After nasotracheal intubation, an infusion of rocuronium bromide was started at 7 µg/kg/min, and the infusion rate was then adjusted to maintain a train of four (TOF) ratio at 10 to 15%. The TOF ratio just prior to oral mucosal injection of a 1% lidocaine hydrochloride solution containing 10 µg/mL epinephrine (LE) was taken as the baseline. TOF ratio was observed for 20 minutes, with 1-minute intervals following the start of injection. Mean epinephrine dose was 85.6 ± 18.6 µg and mean infusion rate of rocuronium bromide was 6.3 ± 1.6 µg/kg/min. TOF ratio began to decrease 2 minutes after the injection of LE, reached the minimum value at 3.1 ± 3.6% 12 minutes after the injection, and then began to recover. We conclude that oral mucosal injection of LE enhances the muscle relaxant effects of rocuronium bromide.

  20. Abaloparatide Injection

    MedlinePlus

    ... of a natural human hormone called parathyroid hormone (PTH). It works by causing the body to build ... container.You should know that abaloparatide injection may cause dizziness, lightheadedness, and fainting when you get up ...

  1. Sumatriptan Injection

    MedlinePlus

    ... accompanied by nausea and sensitivity to sound and light). Sumatriptan injection is also used to treat the ... children. Store it at room temperature, away from light, excess heat, and moisture (not in the bathroom). ...

  2. Certolizumab Injection

    MedlinePlus

    ... has not improved when treated with other medications, rheumatoid arthritis (a condition in which the body attacks its ... continues. When certolizumab injection is used to treat rheumatoid arthritis, it is usually given every other week and ...

  3. Acyclovir Injection

    MedlinePlus

    ... chickenpox in the past) in people with weak immune systems. It is also used to treat first-time ... from time to time) in people with normal immune systems. Acyclovir injection is used to treat herpes simplex ...

  4. Doxercalciferol Injection

    MedlinePlus

    Doxercalciferol injection is used to treat secondary hyperparathyroidism (a condition in which the body produces too much parathyroid hormone [PTH; a natural substance needed to control the amount of calcium in ...

  5. Evolocumab Injection

    MedlinePlus

    ... how to inject this medication.Remove the prefilled syringe or prefilled autoinjector from the refrigerator and allow it to ... before using it. Do not warm the prefilled syringe or prefilled autoinjector in hot water, microwave, or place in ...

  6. Ixekizumab Injection

    MedlinePlus

    ... as a as a solution (liquid) in a prefilled syringe, and as a prefilled autoinjector to inject subcutaneously ( ... dispose of the puncture-resistant container.Remove the prefilled syringe or autoinjector from the refrigerator. Place it on ...

  7. Alirocumab Injection

    MedlinePlus

    ... how to inject this medication.Remove the prefilled syringe or prefilled dosing pen from the refrigerator and allow it ... hours or longer. Do not put the prefilled syringe or prefilled dosing pen back in the refrigerator after it ...

  8. Daclizumab Injection

    MedlinePlus

    Daclizumab comes as a solution (liquid) in a prefilled syringe to inject subcutaneously (under the skin). It is ... or tattooed.Never reuse or share needles or prefilled syringes of medication. Throw away used syringes in a ...

  9. Sarilumab Injection

    MedlinePlus

    ... receive any vaccines. You should not receive any vaccinations while you are using sarilumab injection without talking ... pregnant, tellyour doctor before the baby receives any vaccinations.if you are having surgery, including dental surgery, ...

  10. Zidovudine Injection

    MedlinePlus

    ... zidovudine injection does not cure HIV, it may decrease your chance of developing acquired immunodeficiency syndrome (AIDS) ... sex and making other life-style changes may decrease the risk of transmitting (spreading) the HIV virus ...

  11. Rasburicase Injection

    MedlinePlus

    ... as tumors break down) in people with certain types of cancer who are being treated with chemotherapy medications. Rasburicase injection is in a class of medications called enzymes. It works by breaking down uric acid so ...

  12. Haloperidol Injection

    MedlinePlus

    ... release injection are used to treat schizophrenia (a mental illness that causes disturbed or unusual thinking, loss of ... medications); medications for anxiety, depression, irritable bowel disease, mental illness, motion sickness, Parkinson's disease, seizures, ulcers, or urinary ...

  13. Risperidone Injection

    MedlinePlus

    ... acting) injection is used to treat schizophrenia (a mental illness that causes disturbed or unusual thinking, loss of ... ropinirole (Requip); medications for anxiety, blood pressure, or mental illness; medications for seizures such as carbamazepine (Carbatrol, Epitol, ...

  14. Thiotepa Injection

    MedlinePlus

    ... that begins in the female reproductive organs where eggs are formed), breast, and bladder cancer. It is ... comes as a powder to be mixed with liquid to be injected intravenously (into a vein) by ...

  15. Methotrexate Injection

    MedlinePlus

    ... Methotrexate injection is also used to treat severe psoriasis (a skin disease in which red, scaly patches ... slowing the growth of cancer cells. Methotrexate treats psoriasis by slowing the growth of skin cells to ...

  16. Cefazolin Injection

    MedlinePlus

    ... is used to treat certain infections caused by bacteria including skin, bone, joint, genital, blood, heart valve, ... medications called cephalosporin antibiotics. It works by killing bacteria.Antibiotics such as cefazolin injection will not work ...

  17. Trastuzumab Injection

    MedlinePlus

    ... completed for up to 52 weeks. When trastuzumab injection is used to treat stomach cancer, it is usually given once every 3 weeks. The length of your treatment depends on how well your body responds to the medication and the ...

  18. Bendamustine Injection

    MedlinePlus

    ... leukemia (CLL; a type of cancer of the white blood cells). Bendamustine injection is also used to treat a ... NHL: cancer that begins in a type of white blood cell that normally fights infection) that is slow spreading, ...

  19. Palonosetron Injection

    MedlinePlus

    ... that may occur several days after receiving certain chemotherapy medications. Palonosetron injection is in a class of medications called 5-HT3 receptor antagonists. It works by blocking the action of serotonin, a natural ...

  20. Doxycycline Injection

    MedlinePlus

    ... injection is in a class of medications called tetracycline antibiotics. It works by killing bacteria that cause ... are allergic to doxycycline, minocycline (Dynacin, Minocin, Solodyn), tetracycline (Achromycin V), any other medications, or any of ...

  1. Dexamethasone Injection

    MedlinePlus

    ... severe allergic reactions. It is used in the management of certain types of edema (fluid retention and ... needed for normal body functioning) and in the management of certain types of shock. Dexamethasone injection is ...

  2. Levofloxacin Injection

    MedlinePlus

    ... infections. Levofloxacin injection is also used to prevent anthrax (a serious infection that may be spread on ... in people who may have been exposed to anthrax germs in the air and treat and prevent ...

  3. Omalizumab Injection

    MedlinePlus

    ... steroids. Omalizumab is also used to treat chronic hives without a known cause that cannot successfully be ... is not used to treat other forms of hives or allergic conditions. Omalizumab injection is in a ...

  4. Plerixafor Injection

    MedlinePlus

    ... used along with a granulocyte-colony stimulating factor (G-CSF) medication such as filgrastim (Neupogen) or pegfilgrastim ( ... injection will begin after you have received a G-CSF medication once a day for 4 days, ...

  5. Avelumab Injection

    MedlinePlus

    ... doctor or nurse in a medical facility or infusion center. It is usually given once every 2 ... Avelumab injection may cause serious reactions during the infusion of the medication. You may be given other ...

  6. Alemtuzumab Injection

    MedlinePlus

    ... injection, the medication is usually given three times weekly on alternate days (usually Monday, Wednesday, and Friday) ... that you eat foods that are rich in iron such as meats, leafy green vegetables, and fortified ...

  7. Dinutuximab Injection

    MedlinePlus

    ... treat neuroblastoma (a cancer that begins in nerve cells) in children who have responded to other treatments. Dinutuximab injection is in a class of medications called monoclonal antibodies. It works by killing cancer cells.

  8. Cyclosporine Injection

    MedlinePlus

    ... transplanted organ by the immune system of the person receiving the organ) in people who have received kidney, liver, and heart transplants. Cyclosporine injection should only be used to treat people who are unable to take cyclosporine by mouth. ...

  9. Denosumab Injection

    MedlinePlus

    ... menstrual periods), who have an increased risk for fractures (broken bones) or who cannot take or did ... receiving certain treatments that increase their risk for fractures. Denosumab injection (Xgeva) is used to reduce fractures ...

  10. Epinephrine Injection

    MedlinePlus

    ... emergency medical treatment to treat life-threatening allergic reactions caused by insect bites or stings, foods, medications, ... at the first sign of a serious allergic reaction. Use epinephrine injection exactly as directed; do not ...

  11. Aflibercept Injection

    MedlinePlus

    ... injection is used to treat wet age-related macular degeneration (AMD; an ongoing disease of the eye that ... that leads to blurry vision and vision loss), diabetic macular edema (an eye disease caused by diabetes that can ...

  12. Fondaparinux Injection

    MedlinePlus

    ... the leg), which can lead to pulmonary embolism (PE; a blood clot in the lung), in people ... with warfarin (Coumadin, Jantoven) to treat DVT or PE. Fondaparinux injection is in a class of medications ...

  13. Panitumumab Injection

    MedlinePlus

    ... as a solution (liquid) to be given by infusion (injected into a vein). It is usually given ... doctor or nurse in a doctor's office or infusion center. Panitumumab is usually given once every 2 ...

  14. Topotecan Injection

    MedlinePlus

    ... organs where eggs are formed) and small cell lung cancer (a type of cancer that begins in the ... topotecan injection is used to treat ovarian or lung cancer, it is usually given once a day for ...

  15. Gemcitabine Injection

    MedlinePlus

    ... with surgery. Gemcitabine is also used to treat cancer of the pancreas that has spread to other parts of the ... 4 weeks. When gemcitabine is used to treat cancer of pancreas it may be injected once every week. The ...

  16. Lacosamide Injection

    MedlinePlus

    ... with other medications to control certain types of seizures in people who cannot take oral medications. Lacosamide ... If you suddenly stop using lacosamide injection, your seizures may happen more often. Your doctor will probably ...

  17. Pegloticase Injection

    MedlinePlus

    ... doctor if you have glucose-6-phosphate dehydrogenase (G6PD) deficiency (an inherited blood disease). Your doctor may test you for G6PD deficiency before you start to receive pegloticase injection. If ...

  18. Ibritumomab Injection

    MedlinePlus

    ... is in a class of medications called monoclonal antibodies with radioisotopes. It works by attaching to cancer ... you receive ibritumomab injection, your body may develop antibodies (substances in the blood that help the immune ...

  19. Oxytocin Injection

    MedlinePlus

    Oxytocin injection is used to begin or improve contractions during labor. Oxytocin also is used to reduce bleeding after childbirth. ... other medications or procedures to end a pregnancy. Oxytocin is in a class of medications called oxytocic ...

  20. Edaravone Injection

    MedlinePlus

    Edaravone injection is used to treat amyotrophic lateral sclerosis (ALS, Lou Gehrig's disease; a condition in which the nerves that control muscle movement slowly die, causing the muscles to shrink and ...

  1. Pentamidine Injection

    MedlinePlus

    Pentamidine injection is used to treat pneumonia caused by a fungus called Pneumocystis carinii. It is in a class of medications called antiprotozoals. It works by stopping the growth of protozoa that can cause pneumonia.

  2. Diphenhydramine Injection

    MedlinePlus

    ... or along with other medications to control abnormal movements in people who have Parkinsonian syndrome (a disorder of the nervous system that causes difficulties with movement, muscle control, and balance). Diphenhydramine injection should not ...

  3. Docetaxel Injection

    MedlinePlus

    ... allergic to docetaxel injection or drugs made with polysorbate 80, an ingredient found in some medications. Ask ... if a medication you are allergic to contains polysorbate 80. If you experience any of the following ...

  4. Octreotide Injection

    MedlinePlus

    ... hormone (a natural substance) produced by people with acromegaly (condition in which the body produces too much ... Octreotide long-acting injection is used to control acromegaly, carcinoid tumors, and VIP-omas in people who ...

  5. Vedolizumab Injection

    MedlinePlus

    ... injection may cause serious allergic reactions during an infusion and for several hours afterward. A doctor or ... of the following symptoms during or after your infusion: rash; itching; swelling of the face, eyes, mouth, ...

  6. Granisetron Injection

    MedlinePlus

    ... that may occur after surgery. Granisetron extended-release (long-acting) injection is used with other medications to prevent nausea and vomiting caused by cancer chemotherapy that may occur immediately ...

  7. Fluconazole Injection

    MedlinePlus

    ... injection is used to treat fungal infections, including yeast infections of the mouth, throat, esophagus (tube leading ... by fungus. Fluconazole is also used to prevent yeast infections in patients who are likely to become ...

  8. Intravitreal injection

    MedlinePlus

    ... You may have this procedure if you have: Macular degeneration : An eye disorder that slowly destroys sharp, central ... injection References American Academy of Ophthalmology. Age-related macular degeneration PPP - updated 2015. Aao.org web site. Updated ...

  9. Ciprofloxacin Injection

    MedlinePlus

    ... is used to treat certain infections caused by bacteria such as pneumonia; and infections of the skin, ... of antibiotics called fluoroquinolones. It works by killing bacteria that cause infections.Antibiotics such as ciprofloxacin injection ...

  10. Tobramycin Injection

    MedlinePlus

    ... treat certain serious infections that are caused by bacteria such as meningitis (infection of the membranes that ... medications called aminoglycoside antibiotics. It works by killing bacteria.Antibiotics such as tobramycin injection will not work ...

  11. Ceftriaxone Injection

    MedlinePlus

    ... is used to treat certain infections caused by bacteria such as gonorrhea (a sexually transmitted disease), pelvic ... medications called cephalosporin antibiotics. It works by killing bacteria.Antibiotics such as ceftriaxone injection will not work ...

  12. Moxifloxacin Injection

    MedlinePlus

    ... is used to treat certain infections caused by bacteria such as pneumonia; ; and , skin, and abdominal (stomach ... antibiotics called fluoroquinolones. It works by killing the bacteria that cause infections.Antibiotics such as moxifloxacin injection ...

  13. Daptomycin Injection

    MedlinePlus

    ... in adults or serious skin infections caused by bacteria in adults and children 1 year of age ... called cyclic lipopeptide antibiotics. It works by killing bacteria.Antibiotics such as daptomycin injection will not work ...

  14. Amikacin Injection

    MedlinePlus

    ... treat certain serious infections that are caused by bacteria such as meningitis (infection of the membranes that ... medications called aminoglycoside antibiotics. It works by killing bacteria.Antibiotics such as amikacin injection will not work ...

  15. Meropenem Injection

    MedlinePlus

    ... skin and abdominal (stomach area) infections caused by bacteria and meningitis (infection of the membranes that surround ... of medications called antibiotics. It works by killing bacteria that cause infection.Antibiotics such as meropenem injection ...

  16. Cefepime Injection

    MedlinePlus

    ... is used to treat certain infections caused by bacteria including pneumonia, and skin, urinary tract, and kidney ... medications called cephalosporin antibiotics. It works by killing bacteria.Antibiotics such as cefepime injection will not work ...

  17. Ertapenem Injection

    MedlinePlus

    ... abdominal (stomach area) infections, that are caused by bacteria. It is also used for the prevention of ... medications called carbapenem antibiotics. It works by killing bacteria.Antibiotics such as ertapenem injection will not work ...

  18. Aztreonam Injection

    MedlinePlus

    ... to treat certain infections that are caused by bacteria, including respiratory tract (including pneumonia and bronchitis), urinary ... abdominal (stomach area) infections, that are caused by bacteria. Aztreonam injection also may be used before, during, ...

  19. Ceftaroline Injection

    MedlinePlus

    ... infections and pneumonia (lung infection) caused by certain bacteria. Ceftaroline is in a class of medications called cephalosporin antibiotics. It works by killing bacteria.Antibiotics such as ceftaroline injection will not work ...

  20. Cefotaxime Injection

    MedlinePlus

    ... is used to treat certain infections caused by bacteria including pneumonia and other lower respiratory tract (lung) ... medications called cephalosporin antibiotics. It works by killing bacteria.Antibiotics such as cefotaxime injection will not work ...

  1. Cefuroxime Injection

    MedlinePlus

    ... is used to treat certain infections caused by bacteria including pneumonia and other lower respiratory tract (lung) ... medications called cephalosporin antibiotics. It works by killing bacteria.Antibiotics such as cefuroxime injection will not work ...

  2. Ampicillin Injection

    MedlinePlus

    ... to treat certain infections that are caused by bacteria such as meningitis (infection of the membranes that ... of medications called penicillins. It works by killing bacteria.Antibiotics such as ampicillin injection will not work ...

  3. Gentamicin Injection

    MedlinePlus

    ... treat certain serious infections that are caused by bacteria such as meningitis (infection of the membranes that ... medications called aminoglycoside antibiotics. It works by killing bacteria.Antibiotics such as gentamicin injection will not work ...

  4. MEDICAL INJECTION

    NASA Image and Video Library

    1963-06-10

    S62-08371 (1962) --- The automatic medical injectors carried on the Mercury-Atlas 9 flight. The injectors provide the astronaut with injection tubes of Tigan, for preventing motion sickness and Demerol, for relieving pain. The tubes encased in the block are stowed in the astronauts survival kit. The single injection tubes are placed in a pocket of the astronauts spacesuit. Photo credit: NASA

  5. Injection overview

    SciTech Connect

    Prestwich, S.

    1983-12-01

    The test program was initiated at the Raft River Geothermal Field in southern Idaho in September 1982. A series of eight short-term injection and backflow tests, followed by a long-term injection test, were conducted on one well in the field. Tracers were added during injection and monitored during backflow as well. The principal objective was to determine if tracers could be effectively used as a means to assess reservoir characteristics in a one-well test. The test program resulted in a unique data set which shows promise as a means to improve understanding of the reservoir characteristics. In December 1982, an RFP was issued to obtain an industrial partner to obtain follow-on data on the injection/backflow technique in a second field, and to study any alternate advanced concepts for injection testing which the industrial community might recommend. The East Mesa Geothermal Field was selected for the second test series. Two wells were utilized for testing, and a series of ten tests were conducted in July and August 1983, aimed principally at further evaluation of the injection/backflow technique.

  6. DNA analysis by MALDI-TOF mass spectrometry.

    PubMed

    Gut, Ivo Glynne

    2004-05-01

    The last decade has seen an increased demand for high-throughput DNA analysis. This is mainly due to the human genome sequencing project that is now completed. Matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF) mass spectrometry was pinpointed early on as a technology that could be of great use for sequence variation analysis in the post-genome sequencing era. Applications developed first on this platform were for SNP genotyping. Several strategies for allele-discrimination (hybridization, cleavage, ligation, and primer extension) were combined with MALDI-TOF mass spectrometric detection. Nowadays, in practice, only primer extension methods are applied for large-scale SNP genotyping studies with MALDI-TOF detection. Problems surrounding the integration of SNP genotyping by MALDI-TOF mass spectrometry at high throughput are largely mastered now. Mass spectrometry geared presentations at the HUGO Mutation Detection Meeting in Palm Cove, Australia almost exclusively focused on novel applications that go beyond standard SNP genotyping. These applications are more demanding in terms of chemistry and molecular biology. Molecular haplotyping, expression profiling, DNA methylation analysis, and mutation detection are now being demonstrated.

  7. MALDI-TOF MS analysis of plant proanthocyanidins.

    PubMed

    Monagas, María; Quintanilla-López, Jesús Eduardo; Gómez-Cordovés, Carmen; Bartolomé, Begoña; Lebrón-Aguilar, Rosa

    2010-01-20

    Proanthocyanidins or condensed tannins are among the most abundant polyphenols compounds in our diet and may play a key role in the prevention of cardiovascular and neurodegenerative diseases and cancer. These antioxidants are widely distributed in the plant kingdom both in food plants and in non-food plants. The biological activity of plant proanthocyanidins depends on their chemical structure and concentration. However, due to their structural diversity and complexity, the qualitative and quantitative analysis of proanthocyanidins is a difficult task. Mass spectrometry has enabled great advances in the characterization of plant proanthocyanidins. Among these techniques, MALDI-TOF MS has proved to be highly suited for the analysis of highly polydisperse and heterogeneous proanthocyanidins. The objective of the present paper was to assess the potential, limitations and future challenges of the analysis of plant proanthocyanidins by MALDI-TOF MS techniques. Firstly, the fundamental of this technique, including modes of operation, advantages and limitations, as well as quantitative and qualitative operations, have been summarized. Applications of MALDI-TOF analysis to plant proanthocyanidins reported in the last decade (1997-2008) have been extensively covered, including the sample preparation protocols and conditions used for proanthocyanidin analysis, as well as the main findings regarding the determination of the structural features of different plant proanthocyanidin types (procyanidins, propelargonidins, prodelphinidins, profisetinidins and prorobinetinidins). Finally, attempts in the assessment of the molecular weight distribution of proanthocyanidins by MALDI-TOF are described.

  8. A Range-Shift Technique for TOF Range Image Sensors

    NASA Astrophysics Data System (ADS)

    Sawada, Tomonari; Ito, Kana; Nakayama, Masakatsu; Kawahito, Shoji

    In Time-of-Flight (TOF) range image sensors using periodical pulsed light, there is a trade-off between the maximum range and range resolution. This paper proposes a range-shift technique for improving range resolution of the TOF range image sensor without sacrificing the measurement range. The range-shift operation uses a TOF range imaging pixel with periodical charge draining structure and several time-shifted short pulses. The use of the short pulse can improve the range resolution. The range image using the range-shift technique is synthesized with several sub-frames, each acquires one of the shifted range images. The use of the small duty-ratio pulse leads to reducing the effect of ambient light and improving the range resolution. The range-shift technique is tested with an implemented TOF range image sensor and it is found that the range resolution is improved to 2cm using a 10ns light pulse and 7 overlapped shifted ranges for the measurement range of 0.5m to 4.0m.

  9. Fragmentation of Leucine Enkephalin as a Function of Laser Fluence in a MALDI TOF-TOF

    PubMed Central

    Campbell, Jennifer M.; Stein, Stephen E.; Blank, Paul S.; Epstein, Jonathan A.; Vestal, Marvin L.; Yergey, Alfred L.

    2007-01-01

    The effects of laser fluence on ion formation in MALDI were studied using a tandem TOF mass spectrometer with a Nd-YAG laser and alpha-cyano hydrocinnamic acid matrix. Leucine enkephalin ionization and fragmentation were followed as a function of laser fluence ranging from the threshold of ion formation to the maximum available, i.e., approximately 280 – 930 mJ/mm2. The most notable finding was the appearance of immonium ions at fluence values close to threshold, increasing rapidly and then tapering in intensity with the appearance of typical backbone fragment ions. The data suggest the presence of two distinct environments for ion formation. One is associated with molecular desorption at low values of laser fluence that leads to extensive immonium ion formation. The second becomes dominant at higher fluences, is associated initially with backbone type fragments, but, at the highest values of fluence, progresses to immonium fragments. This second environment is suggestive of ion desorption from large pieces of material ablated from the surface. Arrhenius rate law considerations were used to estimate temperatures associated with the onset of these two processes. PMID:17204430

  10. Improvement of the duty cycle of an orthogonal acceleration time-of-flight mass spectrometer using ion gates.

    PubMed

    Brenton, A G; Krastev, T; Rousell, D J; Kennedy, M A; Craze, A S; Williams, C M

    2007-01-01

    A method to control the duty cycle of a time-of-flight mass spectrometer is described. The method relies on one or more ion gates placed in the beam path that have the function to transmit or stop the beam. These ion gates can switch from the open state to the closed state in tens of nanoseconds and effectively select portions of the mass range. The method is useful in circumstances where recording the complete mass spectrum is not an essential requirement, for example, in the analysis of known compounds where sensitivity and speed of operation are more important. It will be of benefit for applications in separation sciences with techniques involving fast chromatographic separations, where hundreds of mass spectra may be required per second. In such circumstances analytical identification may require only a limited number of masses (or mass regions) to be continuously monitored. Improvement of the duty cycle is particularly important for orthogonal-acceleration time-of-flight (oa-TOF) mass spectrometry instruments whose performance suffers from a low duty cycle. The duty cycle is not a constant for an instrument design but is a mass-dependent function and is least for smaller masses. The method described here is capable of raising the duty cycle to 100%. A theory is developed for one or more ion gate arrangements, for both linear- and reflectron-TOF systems. For a two-gate system the relationship between the positions of the first and second gates is described by a '2/3 rule'. Experimental results are shown for one-gate and two-gate operation, both in linear and in reflectron modes of operation, on an oa-TOF system built in-house.

  11. Least-Squares Adaptive Control Using Chebyshev Orthogonal Polynomials

    NASA Technical Reports Server (NTRS)

    Nguyen, Nhan T.; Burken, John; Ishihara, Abraham

    2011-01-01

    This paper presents a new adaptive control approach using Chebyshev orthogonal polynomials as basis functions in a least-squares functional approximation. The use of orthogonal basis functions improves the function approximation significantly and enables better convergence of parameter estimates. Flight control simulations demonstrate the effectiveness of the proposed adaptive control approach.

  12. The Gibbs Phenomenon for Series of Orthogonal Polynomials

    ERIC Educational Resources Information Center

    Fay, T. H.; Kloppers, P. Hendrik

    2006-01-01

    This note considers the four classes of orthogonal polynomials--Chebyshev, Hermite, Laguerre, Legendre--and investigates the Gibbs phenomenon at a jump discontinuity for the corresponding orthogonal polynomial series expansions. The perhaps unexpected thing is that the Gibbs constant that arises for each class of polynomials appears to be the same…

  13. Experimental quantum cryptography scheme based on orthogonal states: preliminary results

    NASA Astrophysics Data System (ADS)

    Avella, Alessio; Brida, Giorgio; Degiovanni, Ivo P.; Genovese, Marco; Gramegna, Marco; Traina, Paolo

    2010-04-01

    Since, in general, non-orthogonal states cannot be cloned, any eavesdropping attempt in a Quantum Communication scheme using non-orthogonal states as carriers of information introduces some errors in the transmission, leading to the possibility of detecting the spy. Usually, orthogonal states are not used in Quantum Cryptography schemes since they can be faithfully cloned without altering the transmitted data. Nevertheless, L. Goldberg and L. Vaidman [Phys. Rev. Lett. 75 (7), pp. 12391243, 1995] proposed a protocol in which, even if the data exchange is realized using two orthogonal states, any attempt to eavesdrop is detectable by the legal users. In this scheme the orthogonal states are superpositions of two localized wave packets which travel along separate channels, i.e. two different paths inside a balanced Mach-Zehnder interferometer. Here we present an experiment realizing this scheme.

  14. [Elucidating the structure of two cyclotides of Viola tianshanica maxim by MALDI TOF/TOF MS analysis].

    PubMed

    Xiang, Bin; Du, Guo-Hua; Wang, Xu-Chen; Zhang, Shu-Xiang; Qin, Xian-Yun; Kong, Jian-Qiang; Cheng, Ke-Di; Li, Yong-Ji; Wang, Wei

    2010-11-01

    The cyclotides are a family of cyclic "mini" proteins that occur in Violaceae, Rubiaceae and Cucurbitaceae plant families and contain a head-to-tail cyclic backbone and a cystine knot arranged by three disulfide bonds. To study the natural cyclotides of V tianshanica, dried herb was extracted with 50% ethanol, and the concentrated aqueous extract was subjected to a solvent-solvent partitioning between water and hexane, ethyl acetate and n-butanol, separately. The n-butanol extract containing cyclotides was subjected to column chromatography over Sephadex LH-20, eluted with 30% methanol. The subfractions were directly reduced by DTT and analyzed by reverse-phase HPLC. The peaks with different retention times were shown on the profile of RP-HPLC and collected. The cyclotides were speculated based on masses range from 3 000 to 3 500 Da. The purified cyclotides were reduced with DTT, alkylated with iodoacetamide, and then were cleaved with endoproteinase Glu-C, endoproteinase Lys-C and Trypsin, separately. The digested peptides were purified on RP-HPLC and analyzed on MALDI TOF/TOF analyzer. A new cyclotide, cycloviolacin T1 and a reported cyclotide varv E were systemically determined using MALDI TOF/TOF system. So the method for the isolation and characterization of cyclotides was quickly built up in succession.

  15. Coumarin tags for analysis of peptides by MALDI-TOF MS and MS/MS. 2. Alexa Fluor 350 tag for increased peptide and protein Identification by LC-MALDI-TOF/TOF MS.

    PubMed

    Pashkova, Anna; Chen, Hsuan-Shen; Rejtar, Tomas; Zang, Xin; Giese, Roger; Andreev, Victor; Moskovets, Eugene; Karger, Barry L

    2005-04-01

    The goal of this study was the development of N-terminal tags to improve peptide identification using high-throughput MALDI-TOF/TOF MS. Part 1 of the study was focused on the influence of derivatization on the intensities of MALDI-TOF MS signals of peptides. In part 2, various derivatization approaches for the improvement of peptide fragmentation efficiency in MALDI-TOF/TOF MS are explored. We demonstrate that permanent cation tags, while significantly improving signal intensity in the MS mode, lead to severe suppression of MS/MS fragmentation, making these tags unsuitable for high-throughput MALDI-TOF/TOF MS analysis. In the present work, it was found that labeling with Alexa Fluor 350, a coumarin tag containing a sulfo group, along with guanidation of epsilon-amino groups of Lys, could enhance unimolecular fragmentation of peptides with the formation of a high-intensity y-ion series, while the peptide intensities in the MS mode were not severely affected. LC-MALDI-TOF/TOF MS analysis of tryptic peptides from the SCX fractions of an E. coli lysate revealed improved peptide scores, a doubling of the total number of peptides, and a 30% increase in the number of proteins identified, as a result of labeling. Furthermore, by combining the data from native and labeled samples, confidence in correct identification was increased, as many proteins were identified by different peptides in the native and labeled data sets. Additionally, derivatization was found not to impair chromatographic behavior of peptides. All these factors suggest that labeling with Alexa Fluor 350 is a promising approach to the high-throughput LC-MALDI-TOF/TOF MS analysis of proteomic samples.

  16. Anatomy of lithosphere necking during orthogonal rifting

    NASA Astrophysics Data System (ADS)

    Nestola, Yago; Cavozzi, Cristian; Storti, Fabrizio

    2013-04-01

    The evolution of lithosphere necking is a fundamental parameter controlling the structural architecture and thermal-state of rifted margin. The necking shape depends on several parameters, including the extensional strain-rate and thermal layering of the lithosphere. Despite a large number of analogue and numerical modelling studies on lithosphere extension, a quantitative description of the evolution of necking through time is still lacking. We used analogue modelling to simulate in three-dimension the progression of lithosphere thinning and necking during orthogonal rifting. In our models we simulated a typical "cold and young" 4-layer lithosphere stratigraphy: brittle upper crust (loose quartz sand), ductile lower crust (silicon-barite mixture), brittle upper mantle (loose quartz sand), and ductile lower mantle (silicon-barite mixture). The experimental lithosphere rested on a glucose syrup asthenosphere. We monitored model evolution by periodic and coeval laser scanning of both the surface topography and the lithosphere base. After model completion, each of the four layers was removed and the top of the underlying layer was scanned. This technical approach allowed us to quantify the evolution in space and time of the thinning factors for both the whole lithosphere (βz) and the crust (γ). The area of incremental effective stretching (βy) parallel to the extensional direction was obtained from the βz maps.

  17. An orthogonal oriented quadrature hexagonal image pyramid

    NASA Technical Reports Server (NTRS)

    Watson, Andrew B.; Ahumada, Albert J., Jr.

    1987-01-01

    An image pyramid has been developed with basis functions that are orthogonal, self-similar, and localized in space, spatial frequency, orientation, and phase. The pyramid operates on a hexagonal sample lattice. The set of seven basis functions consist of three even high-pass kernels, three odd high-pass kernels, and one low-pass kernel. The three even kernels are identified when rotated by 60 or 120 deg, and likewise for the odd. The seven basis functions occupy a point and a hexagon of six nearest neighbors on a hexagonal sample lattice. At the lowest level of the pyramid, the input lattice is the image sample lattice. At each higher level, the input lattice is provided by the low-pass coefficients computed at the previous level. At each level, the output is subsampled in such a way as to yield a new hexagonal lattice with a spacing sq rt 7 larger than the previous level, so that the number of coefficients is reduced by a factor of 7 at each level. The relationship between this image code and the processing architecture of the primate visual cortex is discussed.

  18. Comparison between covariant and orthogonal Lyapunov vectors.

    PubMed

    Yang, Hong-liu; Radons, Günter

    2010-10-01

    Two sets of vectors, covariant Lyapunov vectors (CLVs) and orthogonal Lyapunov vectors (OLVs), are currently used to characterize the linear stability of chaotic systems. A comparison is made to show their similarity and difference, especially with respect to the influence on hydrodynamic Lyapunov modes (HLMs). Our numerical simulations show that in both Hamiltonian and dissipative systems HLMs formerly detected via OLVs survive if CLVs are used instead. Moreover, the previous classification of two universality classes works for CLVs as well, i.e., the dispersion relation is linear for Hamiltonian systems and quadratic for dissipative systems, respectively. The significance of HLMs changes in different ways for Hamiltonian and dissipative systems with the replacement of OLVs with CLVs. For general dissipative systems with nonhyperbolic dynamics the long-wavelength structure in Lyapunov vectors corresponding to near-zero Lyapunov exponents is strongly reduced if CLVs are used instead, whereas for highly hyperbolic dissipative systems the significance of HLMs is nearly identical for CLVs and OLVs. In contrast the HLM significance of Hamiltonian systems is always comparable for CLVs and OLVs irrespective of hyperbolicity. We also find that in Hamiltonian systems different symmetry relations between conjugate pairs are observed for CLVs and OLVs. Especially, CLVs in a conjugate pair are statistically indistinguishable in consequence of the microreversibility of Hamiltonian systems. Transformation properties of Lyapunov exponents, CLVs, and hyperbolicity under changes of coordinate are discussed in appendices.

  19. The Design of the Orthogonal Box Cavity

    SciTech Connect

    Moretti, Alfred; /Fermilab

    2010-09-15

    The muon collider and/or the neutrino factory require large accelerating electric field gradients immersed in large (3 to 6 T) solenoidal magnetic fields for ionization cooling of muon beams. Our original vacuum breakdown study demonstrated a loss of achievable peak accelerating gradient in solenoidal magnetic fields by a factor 2 or greater. The Muon Collaboration has developed a theory of a method to suppress high electric field breakdown in vacuum cavities needed for a Muon collider or neutrino factory. It has been shown in our studies and by others that high gradient electric field emitted electrons (dark current) are the primary cause of breakdown. A DC magnetic field orthogonal to the RF electric accelerating field prevents dark current high field emitted electrons from traveling across the accelerating gap and then will prevent breakdown. We have decided to test this theory by building a special cavity in the shape of vacuum box. Figure 1 is a simplified view of the cavity design. The design is based on an 805 MHz WR975 waveguide cavity resonating in the TE{sub 101} mode. For the TE{sub 101} mode the resonant frequency f{sub 0} is given by the relationship f{sub 0} = c[(I/a){sup 2} + (m/b){sup 2} + (n/d){sup 2}]{sup 0.5}/2 where a and d are the lengths of the base sides and b is the height of the box in MKS units and c is the velocity of light.

  20. Aeroservoelastic modeling with proper orthogonal decomposition

    NASA Astrophysics Data System (ADS)

    Carlson, Henry A.; Verberg, Rolf; Harris, Charles A.

    2017-02-01

    A physics-based, reduced-order, aeroservoelastic model of an F-18 aircraft has been developed using the method of proper orthogonal decomposition (POD), introduced to the field of fluid mechanics by Lumley. The model is constructed with data from high-dimensional, high-fidelity aeroservoelastic computational fluid dynamics (CFD-ASE) simulations that couple equations of motion of the flow to a modal model of the aircraft structure. Through POD modes, the reduced-order model (ROM) predicts both the structural dynamics and the coupled flow dynamics, offering much more information than typically employed, low-dimensional models based on system identification are capable of providing. ROM accuracy is evaluated through direct comparisons between predictions of the flow and structural dynamics with predictions from the parent, the CFD-ASE model. The computational overhead of the ROM is six orders of magnitude lower than that of the CFD-ASE model—accurately predicting the coupled dynamics from simulations of an F-18 fighter aircraft undergoing flutter testing over a wide range of transonic and supersonic flight speeds on a single processor in 1.073 s.

  1. Approximate Orthogonal Sparse Embedding for Dimensionality Reduction.

    PubMed

    Lai, Zhihui; Wong, Wai Keung; Xu, Yong; Yang, Jian; Zhang, David

    2016-04-01

    Locally linear embedding (LLE) is one of the most well-known manifold learning methods. As the representative linear extension of LLE, orthogonal neighborhood preserving projection (ONPP) has attracted widespread attention in the field of dimensionality reduction. In this paper, a unified sparse learning framework is proposed by introducing the sparsity or L1-norm learning, which further extends the LLE-based methods to sparse cases. Theoretical connections between the ONPP and the proposed sparse linear embedding are discovered. The optimal sparse embeddings derived from the proposed framework can be computed by iterating the modified elastic net and singular value decomposition. We also show that the proposed model can be viewed as a general model for sparse linear and nonlinear (kernel) subspace learning. Based on this general model, sparse kernel embedding is also proposed for nonlinear sparse feature extraction. Extensive experiments on five databases demonstrate that the proposed sparse learning framework performs better than the existing subspace learning algorithm, particularly in the cases of small sample sizes.

  2. A reduced basis localized orthogonal decomposition

    NASA Astrophysics Data System (ADS)

    Abdulle, Assyr; Henning, Patrick

    2015-08-01

    In this work we combine the framework of the Reduced Basis method (RB) with the framework of the Localized Orthogonal Decomposition (LOD) in order to solve parametrized elliptic multiscale problems. The idea of the LOD is to split a high dimensional Finite Element space into a low dimensional space with comparably good approximation properties and a remainder space with negligible information. The low dimensional space is spanned by locally supported basis functions associated with the node of a coarse mesh obtained by solving decoupled local problems. However, for parameter dependent multiscale problems, the local basis has to be computed repeatedly for each choice of the parameter. To overcome this issue, we propose an RB approach to compute in an "offline" stage LOD for suitable representative parameters. The online solution of the multiscale problems can then be obtained in a coarse space (thanks to the LOD decomposition) and for an arbitrary value of the parameters (thanks to a suitable "interpolation" of the selected RB). The online RB-LOD has a basis with local support and leads to sparse systems. Applications of the strategy to both linear and nonlinear problems are given.

  3. Analytical modeling of orthogonal spiral structures

    NASA Astrophysics Data System (ADS)

    Santos, Auteliano A.; Hobeck, Jared D.; Inman, Daniel J.

    2016-11-01

    This paper presents the analytical modeling of orthogonal spiral structures (OSS), a promising option for small-scale energy harvesting applications. This unique multi-beam structure is analyzed using a distributed parameter approach with Euler-Bernoulli assumptions. First, an aluminum substrate is evaluated to determine if the proposed design can be used to capture vibration energy in the desired frequency range using a twelve beam OSS. Finite element calculations are used to validate the analytical model. This model is then modified to include the electromechanical effects of a piezoelectric layer added to the aluminum substrate. Lastly, the effects of the beam width and the number of beams is analyzed for a particular surface area of the OSS. Results show that increasing the number of beams causes a reduction in the first natural frequency. From those results, it is possible to conclude that OSS can be used as an alternative to current energy harvesting systems for MEMS applications, allowing the capture of environmental energy in the frequency range of common mechanical systems.

  4. Identification of Chemical Attribution Signatures of Fentanyl Syntheses Using Multivariate Statistical Analysis of Orthogonal Analytical Data

    SciTech Connect

    Mayer, B. P.; Mew, D. A.; DeHope, A.; Spackman, P. E.; Williams, A. M.

    2015-09-24

    Attribution of the origin of an illicit drug relies on identification of compounds indicative of its clandestine production and is a key component of many modern forensic investigations. The results of these studies can yield detailed information on method of manufacture, starting material source, and final product - all critical forensic evidence. In the present work, chemical attribution signatures (CAS) associated with the synthesis of the analgesic fentanyl, N-(1-phenylethylpiperidin-4-yl)-N-phenylpropanamide, were investigated. Six synthesis methods, all previously published fentanyl synthetic routes or hybrid versions thereof, were studied in an effort to identify and classify route-specific signatures. 160 distinct compounds and inorganic species were identified using gas and liquid chromatographies combined with mass spectrometric methods (GC-MS and LCMS/ MS-TOF) in conjunction with inductively coupled plasma mass spectrometry (ICPMS). The complexity of the resultant data matrix urged the use of multivariate statistical analysis. Using partial least squares discriminant analysis (PLS-DA), 87 route-specific CAS were classified and a statistical model capable of predicting the method of fentanyl synthesis was validated and tested against CAS profiles from crude fentanyl products deposited and later extracted from two operationally relevant surfaces: stainless steel and vinyl tile. This work provides the most detailed fentanyl CAS investigation to date by using orthogonal mass spectral data to identify CAS of forensic significance for illicit drug detection, profiling, and attribution.

  5. A method for determination of phosphatidylethanol from high density lipoproteins by reversed-phase HPLC with TOF-MS detection.

    PubMed

    Tolonen, Ari; Lehto, Tiina M; Hannuksela, Minna L; Savolainen, Markku J

    2005-06-01

    Phosphatidylethanol (PEth) is a unique phospholipid that is formed in the body only in the presence of ethanol. According to a new hypothesis, blood high-density lipoprotein (HDL) particles may act as carriers of PEth and mediate part of the antiatherogenic effects of moderate alcohol drinking. Liquid chromatographic method using reversed-phase C8 column and negative ion mode electrospray ionization-mass spectrometry detection with time-of-flight (TOF) instrument was developed for the determination of very small amounts of PEth that might be present on blood HDL particles. The samples used in the current study were human HDL spiked with PEth and internal standard phosphatidylpropanol (PProp). The use of reversed-phase column enabled a short analysis time of 19 min/injection, which is only one-third of the earlier normal-phase methods reported. Because of the narrow bore column (2.1 mm i.d.) and short analysis time, the solvent consumption was decreased. The sensitivity of detection obtained with TOF-MS was better than that of previous methods, with the detection limit being as low as 1 ng/ml in injected sample (20 pg on-column approximately 28 fmol PEth), corresponding to approximately 6.7 ng of PEth in milliliter of unprepared HDL. Good linearity of detection was obtained for a range of 1-100 ng/ml of PEth, whereas all of the deviations in precision and accuracy were less than 15%.

  6. Ganciclovir Injection

    MedlinePlus

    ... tests to check your body's response to ganciclovir injection.It is important for you to keep a written list of all of the prescription and nonprescription (over-the-counter) medicines you are taking, as well as any products such as vitamins, minerals, or ...

  7. Pertuzumab Injection

    MedlinePlus

    ... tests to check your body's response to pertuzumab injection.It is important for you to keep a written list of all of the prescription and nonprescription (over-the-counter) medicines you are taking, as well as any products such as vitamins, minerals, or ...

  8. Mitoxantrone Injection

    MedlinePlus

    ... to the treatment.If you are using mitoxantrone injection for MS, you should know that it controls MS but does not cure it. Continue to receive treatments even if you feel well. Talk to your doctor if you no longer ...

  9. Olaratumab Injection

    MedlinePlus

    ... your pharmacist any questions you have about olaratumab injection.It is important for you to keep a written list of all of the prescription and nonprescription (over-the-counter) medicines you are taking, as well as any products such as vitamins, minerals, or ...

  10. Reslizumab Injection

    MedlinePlus

    ... the infusion or for a short period of time after the infusion has finished.You will receive each injection of reslizumab in a doctor's office or medical facility. You will stay in the office for some time after you receive the medication so your doctor ...

  11. Teduglutide Injection

    MedlinePlus

    ... syndrome in people who need additional nutrition or fluids from intravenous (IV) therapy. Teduglutide injection is in a class of medications called glucagon-like peptide-2 (GLP-2) analogs. It works by improving the absorption of fluids and nutrients in the intestines.

  12. Pegaptanib Injection

    MedlinePlus

    ... if you have or have ever had diabetes, high blood pressure, a heart attack, or a stroke.tell your doctor if you are pregnant, plan to become pregnant, or are breast-feeding. If you become pregnant while using pegaptanib injection, ...

  13. Computing the roots of complex orthogonal and kernel polynomials

    SciTech Connect

    Saylor, P.E.; Smolarski, D.C.

    1988-01-01

    A method is presented to compute the roots of complex orthogonal and kernel polynomials. An important application of complex kernel polynomials is the acceleration of iterative methods for the solution of nonsymmetric linear equations. In the real case, the roots of orthogonal polynomials coincide with the eigenvalues of the Jacobi matrix, a symmetric tridiagonal matrix obtained from the defining three-term recurrence relationship for the orthogonal polynomials. In the real case kernel polynomials are orthogonal. The Stieltjes procedure is an algorithm to compute the roots of orthogonal and kernel polynomials bases on these facts. In the complex case, the Jacobi matrix generalizes to a Hessenberg matrix, the eigenvalues of which are roots of either orthogonal or kernel polynomials. The resulting algorithm generalizes the Stieljes procedure. It may not be defined in the case of kernel polynomials, a consequence of the fact that they are orthogonal with respect to a nonpositive bilinear form. (Another consequence is that kernel polynomials need not be of exact degree.) A second algorithm that is always defined is presented for kernel polynomials. Numerical examples are described.

  14. Polar Plate Theory for Orthogonal Anisotropy

    NASA Technical Reports Server (NTRS)

    Bailey, Michelle D.; Bower, Mark V.

    2000-01-01

    Laminated fiber-reinforced (or filamentary) composites are used today for their high strength-to-weight and stiffness-to-weight ratios. However, because of the anisotropic behavior of composites, determining the response on a macroscopic scale is challenging. This is particularly evident in the evaluation of the governing differential equations of a circular disk with the fibers of the lamina oriented with rectilinear orthogonality. This includes any situation involving a composite plate of circular geometry in which out-of-plane displacements due to load are desired, such as fastener pull through loading of a composite plate. Current analysis techniques use numerical methods with rectilinear coordinate systems to solve problems with circular geometry. These analyses over predict plate stiffness by 20% and underpredict failure by 70%. Consequently, there is a need to transform classical composite plate theory to a polar coordinate system. In order to better analyze structures with circular geometries the classical composite plate equations are transformed into the plate equations for a rectilinearly anisotropic composite in polar coordinates. A composite plate is typically a laminate of fibers in rectilinear directions. Subsequent to the lay-tip the necessary geometry is cut out of a rectangular plate. In a similar manner, the derivation of the plate equation starts with the fundamental definitions of strain, displacement and curvature and incorporates the material property angular dependence into the equilibrium equations for a differential polar element. In the transformed state, the stiffness coefficients are no longer constant, adding to the complexity of the governing differential equations. This paper discusses the new derivation and evaluation of the plate equations for a circular composite disk with orthogonal rectilinear anisotropy. The resultant new three partial differential equations, which describe the circular anisotropic plate, can be used to

  15. Subjective ranking of concert halls substantiated through orthogonal objective parameters.

    PubMed

    Cerdá, Salvador; Giménez, Alicia; Cibrián, Rosa; Girón, Sara; Zamarreño, Teófilo

    2015-02-01

    This paper studies the global subjective assessment, obtained from mean values of the results of surveys addressed to members of the audience of live concerts in Spanish auditoriums, through the mean values of the three orthogonal objective parameters (Tmid, IACCE3, and LEV), expressed in just noticeable differences (JNDs), regarding the best-valued hall. Results show that a linear combination of the relative variations of orthogonal parameters can largely explain the overall perceived quality of the sample. However, the mean values of certain orthogonal parameters are not representative, which shows that an alternative approach to the problem is necessary. Various possibilities are proposed.

  16. Bayesian Peptide Peak Detection for High Resolution TOF Mass Spectrometry

    PubMed Central

    Zhang, Jianqiu; Zhou, Xiaobo; Wang, Honghui; Suffredini, Anthony; Zhang, Lin; Huang, Yufei; Wong, Stephen

    2011-01-01

    In this paper, we address the issue of peptide ion peak detection for high resolution time-of-flight (TOF) mass spectrometry (MS) data. A novel Bayesian peptide ion peak detection method is proposed for TOF data with resolution of 10 000–15 000 full width at half-maximum (FWHW). MS spectra exhibit distinct characteristics at this resolution, which are captured in a novel parametric model. Based on the proposed parametric model, a Bayesian peak detection algorithm based on Markov chain Monte Carlo (MCMC) sampling is developed. The proposed algorithm is tested on both simulated and real datasets. The results show a significant improvement in detection performance over a commonly employed method. The results also agree with expert’s visual inspection. Moreover, better detection consistency is achieved across MS datasets from patients with identical pathological condition. PMID:21544266

  17. UPLC-TOF-MS analysis of Galium spurium towards its neuroprotective and anticonvulsant activities.

    PubMed

    Orhan, Nilüfer; Deliorman Orhan, Didem; Aslan, Mustafa; Süküroğlu, Murat; Orhan, Ilkay Erdogan

    2012-05-07

    Galium species have been reported to be used against epilepsy in traditional Turkish folk medicine. The present work was undertaken to evaluate the in vivo anticonvulsant and in vitro neuroprotective effects of Galium spurium L. and to determine the major constituents by UPLC-TOF-MS. Anticonvulsant activity of the aerial parts of Galium spurium was investigated using pentylenetetrazole, picrotoxin, and maximal electroshock-induced seizure animal models. In order to evaluate the safety, neurotoxicity (Rota rod test) of the ethanol extract was also determined. In vitro neuroprotective effect of the ethanol extract of Galium spurium was assessed by acetylcholinesterase and butrylcholinesterase inhibitions. Ultra Performance Liquid Chromatography-Time of Flight Mass Spectrometer (UPLC-TOF-MS) was used to identify the major compounds in the extract. In pentylenetetrazole-induced seizure, the ethanol extract at doses of 250 and 1000mg/kg prolonged the onset of seizures. Similarly, Galium spurium (250 and 500mg/kg) significantly delayed the onset of picrotoxin-induced seizures in mice and these doses also exhibited 12.5% and 17% protection, respectively, against picrotoxin-induced seizures. Furthermore, Galium spurium extract showed a significant protective effect against maximal electroshock-induced seizures at doses of 250 and 1000mg/kg (50% and 37.5%, respectively) and also all tested doses prolonged the onset of seizures. No motor co-ordination was observed with intraperitoneal injection of Galium spurium extract at doses of 500 and 1000mg/kg. The extract exhibited 16.2% inhibition against butrylcholinesterase at 200μg/mL concentration, whereas it did not inhibit acetylcholinesterase. Phytochemical analysis of the extract based on the MS data by UPLC-TOF-MS, ten major compounds (phenolic and triterpenic acids, flavonoids and iridoids) were determined. The results indicate that Galium spurium may have anticonvulsant activity against picrotoxin and maximal electroshock

  18. MALDI linear TOF mass spectrometry of PEGylated (glyco)proteins.

    PubMed

    Seyfried, Birgit K; Siekmann, Jürgen; Belgacem, Omar; Wenzel, Ryan J; Turecek, Peter L; Allmaier, Günter

    2010-06-01

    PEGylation of proteins is a fast growing field in biotechnology and pharmaceutical sciences owing to its ability to prolong the serum half-life time of recombinant proteins. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI TOF MS) has been shown to be a powerful tool in the analysis of several PEGylated small proteins. Here we present data obtained with a standard secondary electron multiplier (SEM) and a high mass (HM) detector combined with a MALDI linear TOF MS system for the detection of PEGylated (glyco)proteins in the range of 60-600 kDa. Examples of MALDI TOF MS of small (interferon alpha2a), middle (human serum albumin (HSA)) and high molecular mass proteins (coagulation factor VIII and von Willebrand factor (vWF), both heavily glycosylated proteins) are presented. The particular challenge for the analysis was the heterogeneity of the (glyco)proteins in the high molecular weight range in combination with additional PEGylation, which even introduced more heterogeneity and was more challenging for interpretation. Nevertheless, the performance of MALDI linear TOF MS with both detector systems in terms molecular weight and heterogeneity determination depending on the m/z range was superior to the other methods. Although the SEM was able to obtain information about protein PEGylation in the mass range up to 100 kDa (e.g. PEGylated HSA), the HM system was crucial for detection of HM ions (e.g. PEGylated recombinant vWF), which was impossible with the standard SEM.

  19. [Rapid identification of microorganisms using MALDI-TOF mass spectrometry].

    PubMed

    Sogawa, Kazuyuki; Watanabe, Masaharu; Nomura, Fumio

    2013-01-01

    In a clinical diagnostic microbiology laboratory, the current method of identifying bacterial isolates is based mainly on phenotypic characteristics, such as the growth pattern on different media, colony morphology, Gram stain, and various biochemical reactions. These techniques collectively allow high-level accuracy in identifying most bacterial isolates, but they are costly and time-consuming. In our clinical microbiology laboratory, we prospectively assessed the ability of matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) to identify bacterial strains that were routinely isolated from clinical samples. Bacterial colonies obtained from a total of 468 strains of 92 bacterial species isolated at the Department of Clinical Laboratory at Chiba University were directly placed on target MALDI plates, followed by the addition of CHCA matrix solution. The plates were then subjected to MALDI-TOF MS measurement, and the microorganisms were identified by pattern matching by the libraries in the BioTyper 2.0 software. The identification rates at species and genus levels were 91.7% (429/468) and 97.0% (454/468), respectively. MALDI-TOF MS is a rapid, simple, and high-throughput proteomic technique for the identification of a variety of bacterial species. Since colony to colony differences and the effects of culture duration on the results are minimal, it can be implemented in a conventional laboratory setting. Although for some pathogens, the preanalytic processes should be refined and current database should be improved to obtain more accurate results, the MALDI-TOF MS-based method generally performs as well as the conventional methods and is a promising technology in clinical laboratories.

  20. Fast Orthogonal Row-Column Electronic Scanning With Top-Orthogonal-to-Bottom Electrode Arrays.

    PubMed

    Ceroici, Chris; Harrison, Tyler; Zemp, Roger J

    2017-06-01

    Recently, top-orthogonal-to-bottom electrode 2-D arrays were introduced as a practical design for 3-D ultrasound imaging without requiring the wiring of a 2-D grid of elements. However, previously proposed imaging schemes suffered from speed or image-quality limitations. Here, we propose a new imaging scheme which we call Fast Orthogonal Row-Column Electronic Scanning (FORCES). This new approach takes advantage of bias sensitivity to enable high-quality and fast B-scan imaging. We compare this imaging scheme with an equivalent linear array, a previously proposed row-column imaging scheme, as well as with the Explososcan imaging scheme for 2-D arrays through simulations. In a point phantom simulation, the lateral (azimuthal) resolution of a 64 ×64 element 6.67-MHz λ /2-pitch array using the FORCES imaging scheme with an f-number of 1.7 was 0.52 mm with similar in-plane image quality to an equivalent linear array but with improved and electronically steerable elevational resolution. When compared with other 3-D imaging schemes in point phantom simulations, the FORCES imaging scheme showed an azimuthal resolution improvement of 54% compared with Explososcan. Compared with a previously introduced row-column method, the FORCES imaging scheme had similar resolution but a 25-dB decrease in sidelobe amplitude, significantly impacting contrast to noise in scattering phantoms.

  1. Subcutaneous (SQ) injections

    MedlinePlus

    SQ injections; Sub-Q injections; Diabetes subcutaneous injection; Insulin subcutaneous injection ... NIH. Giving a subcutaneous injection . Rockville, MD. National ... of Health and Human Services NIH publications; 2015. Available ...

  2. TOF SIMS characterization of SEI layer on battery electrodes

    NASA Astrophysics Data System (ADS)

    Veryovkin, I. V.; Tripa, C. E.; Zinovev, A. V.; Baryshev, S. V.; Li, Y.; Abraham, D. P.

    2014-08-01

    In the last decade, many studies applied surface analysis techniques (SEM, XPS and SIMS) to understand the formation of SEI layers on Li-ion battery electrodes. This work was meant as a comparative model study of the SEI layer formation, which combined in situ SEM imaging with TOF SIMS depth profiling of four samples of the same graphite electrode material, which was subjected to different charge-discharge cycling schemes in a Li-ion battery. Besides comparing compositions of sub-surface regions of these differently processed electrodes, we wanted to know whether these compositions depend on after-cycling sample preparation, in particular if a brief exposure of these samples to air would affect the compositions measured by TOF SIMS. We found that the exposure to air (1) increases secondary ion yield for all species, and (2) changes shapes of SIMS depth profiles for some key species. For selected samples, we also conducted a comparison between the conventional single beam TOF-SIMS depth profiling and a high resolution dual beam depth profiling and found that the former approach can detect the same features in depth profiles as the latter one. We interpreted this as an indication that the sample surface morphology (high roughness) could be a limiting factor in this SEI study, suggesting that specially designed model samples with smooth surfaces are a better choice for future studies.

  3. Exploratory analysis of TOF-SIMS data from biological surfaces

    NASA Astrophysics Data System (ADS)

    Vaidyanathan, Seetharaman; Fletcher, John S.; Henderson, Alex; Lockyer, Nicholas P.; Vickerman, John C.

    2008-12-01

    The application of multivariate analytical tools enables simplification of TOF-SIMS datasets so that useful information can be extracted from complex spectra and images, especially those that do not give readily interpretable results. There is however a challenge in understanding the outputs from such analyses. The problem is complicated when analysing images, given the additional dimensions in the dataset. Here we demonstrate how the application of simple pre-processing routines can enable the interpretation of TOF-SIMS spectra and images. For the spectral data, TOF-SIMS spectra used to discriminate bacterial isolates associated with urinary tract infection were studied. Using different criteria for picking peaks before carrying out PC-DFA enabled identification of the discriminatory information with greater certainty. For the image data, an air-dried salt stressed bacterial sample, discussed in another paper by us in this issue, was studied. Exploration of the image datasets with and without normalisation prior to multivariate analysis by PCA or MAF resulted in different regions of the image being highlighted by the techniques.

  4. The Fission Programme at the CERN n_TOF Facility

    NASA Astrophysics Data System (ADS)

    Tsinganis, A.; Barbagallo, M.; Berthoumieux, E.; Calviani, M.; Chiaveri, E.; Colonna, N.; Diakaki, M.; Duran, I.; Guerrero, C.; Gunsing, F.; Leal-Cidoncha, E.; Leong, L.-S.; Paradela, C.; Tarrio, D.; Tassan-Got, L.; Vlastou, R.

    Since 2001, the scientific programme of the CERN n_TOF facility has focused mainly on the study of radiative neutron capture reactions, which are of great interest to nuclear astrophysics and on neutron-induced fission reactions, which are of relevance for nuclear technology, as well as essential for the development of theoretical models of fission. In particular, taking advantage of the high instantaneous neutron flux and high energy resolution of the facility, as well as of high-performance detection and acquisition systems, accurate new measurements on several long-lived major and minor actinides, from 232Th to 245Cm, have been performed so far. Data on these isotopes are needed in order to improve the safety and efficiency of conventional reactors, as well as to develop new systems for nuclear energy production and treatment of nuclear waste, such as Generation IV reactors, Accelerator Driven Systems and reactors based on innovative fuel cycles. A review of the most important results on fission cross-sections and fragment properties obtained at n_TOF for a variety of (radioactive) isotopes is presented along with the perspectives arising from the coming on line in the second half of 2014 of a new 19 m flight-path, which will allow n_TOF to expand its measurement capabilities to even more rare or short-lived isotopes, such as 230Th, 232U, 238,240Pu and 244Cm.

  5. LC-IM-TOF Instrument Control & Data Visualization Software

    SciTech Connect

    2011-05-12

    Liquid Chromatography-Ion Mobility-time of Flight Instrument Control and Data Visualization software is designed to control instrument voltages for the Ion Mobility drift tube. It collects and stores information collected from the Agilent TOF instrument and analyses/displays the ion intensity information acquired. The software interface can be split into 3 categories -- Instrument Settings/Controls, Data Acquisition, and Viewer. The Instrument Settings/Controls prepares the instrument for Data Acquisition. The Viewer contains common objects that are used by Instrument Settings/Controls and Data Acquisition. Intensity information is collected in 1 nanosec bins and separated by TOF pulses called scans. A collection of scans are stored side by side making up an accumulation. In order for the computer to keep up with the stream of data, 30-50 accumulations are commonly summed into a single frame. A collection of frames makes up an experiment. The Viewer software then takes the experiment and presents the data in several possible ways, each frame can be viewed in TOF bins or m/z (mass to charge ratio). The experiment can be viewed frame by frame, merging several frames, or by viewing the peak chromatogram. The user can zoom into the data, export data, and/or animate frames. Additional features include calibration of the data and even post-processing multiplexed data.

  6. Quantitative Analysis with Heavy Ion E-TOF ERD

    SciTech Connect

    Banks, J.C.; Doyle, B.L.; Font, A. Climent

    1999-07-23

    Heavy ion TOF ERD combined with energy detection (E-TOF-ERD) is a powerful analytical technique taking advantage of the following facts: the scattering cross section is usually very high ({approximately}10{sup {minus}21} cm{sup 2}/sr) compared to regular He RBS ({approximately}10{sup {minus}25} cm{sup 2}/sr), contrary to what happens with the energy resolution in ordinary surface solid barrier detectors, time resolution is almost independent of the atomic mass of the detected element, and the detection in coincidence of time and energy signals allows for the mass separation of overlapping signals with the same energy (or time of flight). Measurements on several oxides have been performed with the E-TOF-ERD set up at Sandia National Laboratories using an incident beam of 10-15 MeV Au. The information on the composition of the sample is obtained from the time domain spectrum, which is converted to energy domain, and then, using existing software codes, the analysis is performed. During the quantification of the results, they have found problems related to the interaction of the beam with the sample and to the tabulated values of the stopping powers for heavy ions.

  7. CANbus protocol and applications for STAR TOF Control

    NASA Astrophysics Data System (ADS)

    Schambach, J.; Bridges, L.; Burton, W.; Eppley, G.; Kajimoto, K.; Nussbaum, T.

    2011-12-01

    A large-area Time-of-Flight (TOF) system based on Multi-gap Resistive Plate Chambers (MRPCs) has recently been installed in the STAR experiment at RHIC. The approximately 23000 detector channels are read out and digitized using custom electronics based on the CERN NINO and HPTDC chips. The data are sent to the experimental data acquisition system (DAQ) using the ALICE fiber optics based Detector Data Link (DDL). The readout system consists of a total of approximately 2100 custom electronics boards mounted directly on 120 TOF trays, as well as four DAQ and trigger interface boards outside the detector that collect data from 30 trays each and send it to DAQ. Control and monitoring of these electronics boards is done using a tiered network of CANbus connections to a control PC. We describe the physical implementation and topology of the CANbus connections and the custom protocol developed for this project. Several command-line tools as well as a Qt4-based graphical tool developed on the host side to facilitate configuration, control, and monitoring of the TOF system are also described.

  8. Spontaneous-Desorption Ionizer for a TOF-MS

    NASA Technical Reports Server (NTRS)

    Schultz, J. Albert

    2006-01-01

    A time-of-flight mass spectrometer (TOF-MS) like the one mentioned in the immediately preceding article has been retrofitted with an ionizer based on a surface spontaneous-desorption process. This ionizer includes an electron multiplier in the form of a microchannel plate (MCP). Relative to an ionizer based on a hot-filament electron source, this ionizer offers advantages of less power consumption and greater mechanical ruggedness. The current density and stability characteristics of the electron emission of this ionizer are similar to those of a filament-based ionizer. In tests of various versions of this ionizer in the TOF-MS, electron currents up to 100 nA were registered. Currents of microamperes or more - great enough to satisfy requirements in most TOFMS applications - could be obtained by use of MCPs different from those used in the tests, albeit at the cost of greater bulk. One drawback of this ionizer is that the gain of the MCP decreases as a function of the charge extracted thus far; the total charge that can be extracted over the operational lifetime is about 1 coulomb. An MCP in the ion-detector portion of the TOF-MS is subject to the same limitation.

  9. Comparison of yttrium-90 quantitative imaging by TOF and non-TOF PET in a phantom of liver selective internal radiotherapy

    NASA Astrophysics Data System (ADS)

    van Elmbt, Larry; Vandenberghe, Stefaan; Walrand, Stephan; Pauwels, Stanislas; Jamar, François

    2011-11-01

    The aim of this study is to determine the feasibility of achieving quantitative measurement in 90Y-microspheres liver selective internal radiotherapy (SIRT) by imaging 90Y with a conventional non-time of flight (TOF) PET device. Instead of the bremsstrahlung x-rays of the β-decay, the low branch of e-- e+ pair production in the 90Y-decay was used. The activity distribution in a phantom-simulated liver SIRT was obtained by direct 90Y-PET imaging. We tested a LYSO TOF PET and two GSO and BGO non-TOF PET scanners using a 3.6-l cylindrical phantom filled with the 90Y solution containing two sets of hot and cold spheres. The best hot contrast was obtained with the LYSO TOF. It was close to the expected value and remained constant, even for short acquisition times. The LYSO non-TOF was about 10% lower. The GSO performed similarly but degraded for shorter times whilst the BGO was the worst with 40% loss. For the cold spheres, the LYSO TOF and the GSO provided the best results, while the LYSO non-TOF and the BGO were the worst. 90Y PET imaging in liver SIRT is achievable with LYSO TOF. Conventional LYSO and GSO show a loss of contrast and require longer acquisition times. BGO imaging is not feasible for dosimetry calculation.

  10. The benefit of combining nLC-MALDI-Orbitrap MS data with nLC-MALDI-TOF/TOF data for proteomic analyses employing elastase.

    PubMed

    Rietschel, Benjamin; Baeumlisberger, Dominic; Arrey, Tabiwang N; Bornemann, Sandra; Rohmer, Marion; Schuerken, Malte; Karas, Michael; Meyer, Bjoern

    2009-11-01

    The recently established coupling of a MALDI-type ion source to a linear ion trap and an orbitrap mass analyzer offers high-accuracy mass measurements compared to common MALDI-TOF/TOF instruments. Contrary to MALDI-TOF/TOF, the fragmentation of peptides in the new hybrid mass spectrometer is less efficient due to the generation of predominantly singly charged ions by the MALDI process. Therefore, data from two MALDI instruments, TOF/TOF and Orbitrap, were combined into a single data set in order to obtain accurate precursor masses as well as superior MS/MS spectra. This study demonstrates that an accurate precursor mass is particularly important for the nLC-MS/MS analyses of less-specific proteolytic digests. A potential gain of approximately one-third additional peptides identifications was theoretically estimated from previously published MALDI-TOF/TOF data. These calculations were verified by the nLC-MS/MS analysis of two elastatically digested proteomes, one cytosolic (Corynebacterium glutamicum) and one membrane (Halobacterium salinarium). Thereby it was discovered that the error distribution of a MALDI-Orbitrap can be significantly improved by applying an easy recalibration strategy. In summary, this study represents an updated workflow for the analysis of less-specific digests using nLC-MALDI.

  11. Rapid Identification of Protein Biomarkers of E. coli O157:H7 by MALDI-TOF-TOF Mass Spectrometry and Top-Down Proteomics

    USDA-ARS?s Scientific Manuscript database

    We have identified six protein biomarkers from two strains of E. coli O157:H7 and one non-pathogenic E. coli strain by matrix-assisted laser desorption/ionization (MALDI) time-of-flight/time-of-flight tandem mass spectrometry (TOF/TOF-MS/MS) and top-down proteomics. Mature, intact proteins were ext...

  12. A new calibrant for MALDI-TOF-TOF-PSD-MS/MS of non-digested proteins for top-down proteomic analysis

    USDA-ARS?s Scientific Manuscript database

    RATIONALE: Matrix-assisted laser desorption/ionization (MALDI) time-of-flight-time-of-flight (TOF-TOF) tandem mass spectrometry (MS/MS) has seen increasing use for post-source decay (PSD)-MS/MS analysis of non-digested protein ions for top-down proteomic identification. However, there is no commonl...

  13. YahO protein as a calibrant for top-down proteomic identification of Shiga toxin using MALDI-TOF-TOF-MS/MS and post-source decay

    USDA-ARS?s Scientific Manuscript database

    Matrix-assisted laser desorption/ionization tandem time-of-flight (MALDI-TOF-TOF) mass spectrometry is increasingly utilized for rapid top-down proteomic identification of proteins. This identification may involve analysis of either a pure protein or a protein mixture. For analysis of a pure protein...

  14. MALDI post-source decay and LIFT-TOF/TOF investigation of alpha-cyano-4-hydroxycinnamic acid cluster interferences.

    PubMed

    Neubert, Hendrik; Halket, John M; Fernandez Ocaña, Mireia; Patel, Raj K P

    2004-03-01

    Large signals from alpha-cyano-4-hydroxycinnamic acid (CHCA) matrix complexes with sodium and potassium ions were found to interfere with sensitive matrix-assisted laser desorption/ionization (MALDI) analysis of a hydrochloric acid digest of gelatine preparations. The nature of some selected matrix clusters was investigated by conventional post-source decay and LIFT-TOF/TOF experiments. The matrix clusters fragmented readily by neutral evaporation to give smaller sized matrix cluster species without matrix disintegration. Their characterization distinguished them from peptide signals, in particular from those that had the same nominal mass and differed only in the fractional part of the mass as encountered for gelatine-derived peptides. Knowledge of the molecular composition of these cluster species allowed using them for internal calibration of the MALDI mass spectra. The hydrolytic peptides could be analyzed with increased sensitivity when using 2,5-dihydroxy benzoic acid (DHB) as the MALDI matrix.

  15. Comprehensive analysis of serum metabolites in gestational diabetes mellitus by UPLC/Q-TOF-MS.

    PubMed

    Liu, Tianhu; Li, Jiaxun; Xu, Fengcheng; Wang, Mengni; Ding, Shijia; Xu, Hongbing; Dong, Fang

    2016-02-01

    Gestational diabetes mellitus (GDM) refers to the first sign or onset of diabetes mellitus during pregnancy rather than progestation. In recent decades, more and more research has focused on the etiology and pathogenesis of GDM in order to further understand GDM progress and recovery. Using an advanced metabolomics platform based on ultra-performance liquid chromatography quadrupole time-of-flight mass spectrometry (UPLC/Q-TOF-MS), we explored the changes in serum metabolites between women with GDM and healthy controls during and after pregnancy. Some significant differences were discovered using multivariate analysis including partial least-squares discriminant analysis (PLS-DA) and orthogonal PLS-DA (OPLS-DA). The dysregulated metabolites were further compared and verified in several databases to understand how these compounds might function as potential biomarkers. Analyses of the metabolic pathways associated with these potential biomarkers were subsequently explored. A total of 35 metabolites were identified, contributing to GDM progress to some extent. The identified biomarkers were involved in some important metabolic pathways including glycine, serine, and threonine metabolism; steroid hormone biosynthesis; tyrosine metabolism; glycerophospholipid metabolism; and fatty acid metabolism. The above mentioned metabolic pathways mainly participate in three major metabolic cycles in humans, including lipid metabolism, carbohydrate metabolism, and amino acid metabolism. In this pilot study, the valuable comprehensive analysis gave us further insight into the etiology and pathophysiology of GDM, which might benefit the feasibility of a rapid, accurate diagnosis and reasonable treatment as soon as possible but also prevent GDM and its related short- and long-term complications.

  16. Nonlocality of orthogonal product-basis quantum states

    NASA Astrophysics Data System (ADS)

    Wang, Yan-Ling; Li, Mao-Sheng; Zheng, Zhu-Jun; Fei, Shao-Ming

    2015-09-01

    We study the local indistinguishability of mutually orthogonal product basis quantum states in the high-dimensional quantum system. In the quantum system of Cd⊗Cd , where d is odd, Zhang et al. [Z.-C. Zhang et al., Phys. Rev. A 90, 022313 (2014), 10.1103/PhysRevA.90.022313] have constructed d2 orthogonal product basis quantum states that are locally indistinguishable. We find a subset that contains 6 d -9 orthogonal product states that are still locally indistinguishable. We generalize our method to an arbitrary bipartite quantum system Cm⊗Cn . We present a small set with only 3 (m +n )-9 orthogonal product states and prove that these states are local operations and classical communication (LOCC) indistinguishable. Even though these 3 (m +n )-9 product states are LOCC indistinguishable, they can be distinguished by separable measurements. This shows that separable operations are strictly stronger than the local operations and classical communication.

  17. 13. Credit JTL: Detail, orthogonal view of Egyptian Revivial decorative ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    13. Credit JTL: Detail, orthogonal view of Egyptian Revivial decorative motifs used typically at midpoints of diagonals - Reading-Halls Station Bridge, U.S. Route 220, spanning railroad near Halls Station, Muncy, Lycoming County, PA

  18. Systems of Differential Equations with Skew-Symmetric, Orthogonal Matrices

    ERIC Educational Resources Information Center

    Glaister, P.

    2008-01-01

    The solution of a system of linear, inhomogeneous differential equations is discussed. The particular class considered is where the coefficient matrix is skew-symmetric and orthogonal, and where the forcing terms are sinusoidal. More general matrices are also considered.

  19. Systems of Differential Equations with Skew-Symmetric, Orthogonal Matrices

    ERIC Educational Resources Information Center

    Glaister, P.

    2008-01-01

    The solution of a system of linear, inhomogeneous differential equations is discussed. The particular class considered is where the coefficient matrix is skew-symmetric and orthogonal, and where the forcing terms are sinusoidal. More general matrices are also considered.

  20. Generalized Rayleigh and Jacobi Processes and Exceptional Orthogonal Polynomials

    NASA Astrophysics Data System (ADS)

    Chou, C.-I.; Ho, C.-L.

    2013-09-01

    We present four types of infinitely many exactly solvable Fokker-Planck equations, which are related to the newly discovered exceptional orthogonal polynomials. They represent the deformed versions of the Rayleigh process and the Jacobi process.

  1. Self-mixing interferometry with mutual independent orthogonal polarized light.

    PubMed

    Zhang, Shaohui; Zhang, Shulian; Tan, Yidong; Sun, Liqun

    2016-02-15

    A self-mixing interferometry with mutual independent orthogonal polarized light is introduced. Its most important feature is that two mutual independent orthogonal lights are used as measuring and reference light. Frequency shifting and polarization multiplexing technologies are used in the proposed optical system. Phase variation of the two orthogonal polarized beams is simultaneously measured through heterodyne demodulation with a lock-in amplifier. The phase difference of the orthogonal polarized light accurately reflects the target displacement. The target in this system is a non-cooperative object which is different from a traditional Michelson interferometer. The primary experimental results show that this kind of self-mixing interferometry is very feasible. Under typical room conditions, the system's short-term resolution is better than 2 nm.

  2. A case study of de novo sequence analysis of N-sulfonated peptides by MALDI TOF/TOF mass spectrometry.

    PubMed

    Samyn, Bart; Debyser, Griet; Sergeant, Kjell; Devreese, Bart; Van Beeumen, Jozef

    2004-12-01

    The simplicity and sensitivity of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry have increased its application in recent years. The most common method of "peptide mass fingerprint" analysis often does not provide robust identification. Additional sequence information, obtained by post-source decay or collision induced dissociation, provides additional constraints for database searches. However, de novo sequencing by mass spectrometry is not yet common practice, most likely because of the difficulties associated with the interpretation of high and low energy CID spectra. Success with this type of sequencing requires full sequence coverage and demands better quality spectra than those typically used for data base searching. In this report we show that full-length de novo sequencing is possible using MALDI TOF/TOF analysis. The interpretation of MS/MS data is facilitated by N-terminal sulfonation after protection of lysine side chains (Keough et al., Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 7131-7136). Reliable de novo sequence analysis has been obtained using sub-picomol quantities of peptides and peptide sequences of up to 16 amino acid residues in length have been determined. The simple, predictable fragmentation pattern allows routine de novo interpretation, either manually or using software. Characterization of the complete primary structure of a peptide is often hindered because of differences in fragmentation efficiencies and in specific fragmentation patterns for different peptides. These differences are controlled by various structural parameters including the nature of the residues present. The influence of the presence of internal Pro, acidic and basic residues on the TOF/TOF fragmentation pattern will be discussed, both for underivatized and guanidinated/sulfonated peptides.

  3. [Orthogonal design based optimization of a mouse model of acute liver failure induced by D-galactosamine and lipopolysaccharide].

    PubMed

    Yang, Hao-zhen; Chen, Long; Tong, Jing-jing; Zhang, Hui-ying; Pang, Fei; Xu, Zhi-heng; Xin, Shao-jie; Hu, Jin-hua

    2013-06-01

    To apply an orthogonal design optimization strategy to a mouse model of acute liver failure induced by D-galactosamine (D-GalN) and lipopolysaccharide (LPS) exposure. A four-level orthogonal array design (L16(45)) was constructed to test factors with potential impact on successful establishment of the model (D-GalN and LPS dosages, and dilution rate of the D-GalN/LPS mixture). The mortality rate of mice within 24 hours of D-GalN/LPS administration was determined by the Kaplan-Meier method. The model outcome was verified by changes in serum alanine transferase level, liver histology, and hepatocyte apoptosis. The orthogonal array identified the optimal model technique as intraperitoneal injection of a combination of D-GalN and LPS at dosages of 350 mg/kg and 30 mug/kg, respectively, and using a dilution rate of 3. The dosages tested had no effect on survival. The typical signs of liver failure appeared at 6 hrs after administration of the D-GalN/LPS combination. The orthogonal design optimization strategy provided a procedure for establishing a mouse model of acute liver failure induced by D-GalN and LPS that showed appropriate disease outcome and survival, and which will serve to improve future experimental research of acute liver failure.

  4. Symmetry Groups for Linear Programming Relaxations of Orthogonal Array Problems

    DTIC Science & Technology

    2015-03-26

    Symmetry Groups for Linear Programming Relaxations of Orthogonal Array Problems THESIS MARCH 2015 David M. Arquette, Second Lieutenant, USAF AFIT-ENC...work of the U.S. Government and is not subject to copyright protection in the United States. AFIT-ENC-MS-15-M-003 SYMMETRY GROUPS FOR LINEAR...PUBLIC RELEASE; DISTRIBUTION UNLIMITED. AFIT-ENC-MS-15-M-003 SYMMETRY GROUPS FOR LINEAR PROGRAMMING RELAXATIONS OF ORTHOGONAL ARRAY PROBLEMS David M

  5. A few thoughts on proper orthogonal decomposition in turbulence

    NASA Astrophysics Data System (ADS)

    Podvin, Bérengère; Fraigneau, Yann

    2017-02-01

    Proper orthogonal decomposition was originally introduced in turbulence to identify large-scale patterns in turbulent flows. Over the years, several extensions have been formulated in order to strengthen its model-predictive abilities, with limited success in the case of fully developed turbulence. We argue that physics-based insight obtained from the proper orthogonal decomposition structures and other turbulence analysis techniques could lead to significant developments in that respect. Numerical results from channel flow simulations are used to illustrate our conjectures.

  6. Local unitary equivalence of quantum states and simultaneous orthogonal equivalence

    NASA Astrophysics Data System (ADS)

    Jing, Naihuan; Yang, Min; Zhao, Hui

    2016-06-01

    The correspondence between local unitary equivalence of bipartite quantum states and simultaneous orthogonal equivalence is thoroughly investigated and strengthened. It is proved that local unitary equivalence can be studied through simultaneous similarity under projective orthogonal transformations, and four parametrization independent algorithms are proposed to judge when two density matrices on ℂd1 ⊗ ℂd2 are locally unitary equivalent in connection with trace identities, Kronecker pencils, Albert determinants and Smith normal forms.

  7. Computerized tomography using a modified orthogonal tangent correction algorithm.

    PubMed

    Hsia, T C; Smith, S C; Lantz, B M

    1976-10-01

    A modified orthogonal tangent correction algorithm is presented for computerized tomography. The algorithm uses four X-rays scans spaced 45 degrees apart, to reconstruct a transverse axial image. The reconstruction procedure is interative in which image matrix elements are corrected by alternately matching the two sets of orthogonal scan data. The algorithm has been applied to phantom data as well as to video recorded fluoroscopic data.

  8. Expansion and orthogonalization of measured modes for structure identification

    NASA Technical Reports Server (NTRS)

    Smith, Suzanne Weaver

    1989-01-01

    The purpose was to investigate a new simultaneous expansion/orthogonalization method in comparison with two previously published expansion methods and a widely used orthogonalization technique. Each expansion method uses data from an analytical model of the structure to complete the estimate of the mode shape vectors. Berman and Nagy used Guyan expansion in their work with improving analytical models. In this method, modes are expanded one at a time, producing a set not orthogonal with respect to the mass matrix. Baruch and Bar Itzhack's optimal orthogonalization procedure was used to subsequently adjust the expanded modes. A second expansion technique was presented by O'Callahan, Avitabile, and Reimer and separately by Kammer. Again, modes are expanded individually and orthogonalized after expansion with the same optimal technique as above. Finally, a simultaneous expansion/orthogonalization method was developed from the orthogonal Procrustes problem of computational mathematics. In this method modes are optimally expanded as a set and orthogonal with respect to the mass matrix as a result. Two demonstation problems were selected for the comparison of the methods described. The first problem is an 8 degree of freedom spring-mass problem first presented by Kabe. Several conditions were examined for expansion method including the presence of errors in the measured data and in the analysis models. As a second demonstration problem, data from tests of laboratory scale model truss structures was expanded for system identification. Tests with a complete structure produced a correlated analysis model and the stiffness and mass matrices. Tests of various damaged configurations produced measured data for 6 modes at 14 dof locations.

  9. ONMCGP: Orthogonal Neighbourhood Mutation Cartesian Genetic Programming for Evolvable Hardware

    NASA Astrophysics Data System (ADS)

    I, Fuchuan N.; I, Yuanxiang L.; E, Peng K.

    2014-03-01

    Evolvable Hardware is facing the problems of scalability and stalling effect. This paper proposed a novel Orthogonal Neighbourhood Mutation (ONM) operator in Cartesian genetic programming (CGP), to reduce the stalling effect in CGP and improve the efficiency of the algorithms.The method incorporates with Differential Evolution strategy. Demonstrated by experiments on benchmark, the proposed Orthogonal Neighbourhood Search can jump out of Local optima, reduce the stalling effect in CGP and the algorithm convergence faster.

  10. A comparative study on detection of organic surface modifiers on mineral grains by TOF-SIMS, VUV SALI TOF-SIMS and VUV SALI with laser desorption

    NASA Astrophysics Data System (ADS)

    Dimov, S. S.; Chryssoulis, S. L.

    2004-06-01

    Results from a comparative study on the detection of organic collectors by TOF-SIMS, vacuum ultraviolet surface analysis by laser ionization with TOF-SIMS detection (VUV SALI TOF-SIMS) and VUV SALI with laser desorption (VUV TOF-LIMS) are reported. The study was carried out on a PHI 7200 TOF-SIMS instrument upgraded with two lasers: one for laser desorption and another one for VUV laser postionization. A systematic analysis of the laser desorption process lead to a set of optimized desorption parameters and desorption of molecules with a controlled level of fragmentation. The recorded spectra of organic collectors by VUV SALI with laser desorption are characterized by strong parent peaks and simpler fragmentation patterns, which allow for easy molecular identification. Advantages and limitations of the three techniques for analysis of organic collectors on mineral grains are discussed.

  11. Secondary metabolite profiling of Curcuma species grown at different locations using GC/TOF and UPLC/Q-TOF MS.

    PubMed

    Lee, Jueun; Jung, Youngae; Shin, Jeoung-Hwa; Kim, Ho Kyoung; Moon, Byeong Cheol; Ryu, Do Hyun; Hwang, Geum-Sook

    2014-07-04

    Curcuma, a genus of rhizomatous herbaceous species, has been used as a spice, traditional medicine, and natural dye. In this study, the metabolite profile of Curcuma extracts was determined using gas chromatography-time of flight mass spectrometry (GC/TOF MS) and ultrahigh-performance liquid chromatography-quadrupole time-of-flight mass spectrometry (UPLC/Q-TOF MS) to characterize differences between Curcuma aromatica and Curcuma longa grown on the Jeju-do or Jin-do islands, South Korea. Previous studies have performed primary metabolite profiling of Curcuma species grown in different regions using NMR-based metabolomics. This study focused on profiling of secondary metabolites from the hexane extract of Curcuma species. Principal component analysis (PCA) and partial least-squares discriminant analysis (PLS-DA) plots showed significant differences between the C. aromatica and C. longa metabolite profiles, whereas geographical location had little effect. A t-test was performed to identify statistically significant metabolites, such as terpenoids. Additionally, targeted profiling using UPLC/Q-TOF MS showed that the concentration of curcuminoids differed depending on the plant origin. Based on these results, a combination of GC- and LC-MS allowed us to analyze curcuminoids and terpenoids, the typical bioactive compounds of Curcuma, which can be used to discriminate Curcuma samples according to species or geographical origin.

  12. On the equivalence of dynamically orthogonal and bi-orthogonal methods: Theory and numerical simulations

    SciTech Connect

    Choi, Minseok; Sapsis, Themistoklis P.; Karniadakis, George Em

    2014-08-01

    The Karhunen–Lòeve (KL) decomposition provides a low-dimensional representation for random fields as it is optimal in the mean square sense. Although for many stochastic systems of practical interest, described by stochastic partial differential equations (SPDEs), solutions possess this low-dimensional character, they also have a strongly time-dependent form and to this end a fixed-in-time basis may not describe the solution in an efficient way. Motivated by this limitation of standard KL expansion, Sapsis and Lermusiaux (2009) [26] developed the dynamically orthogonal (DO) field equations which allow for the simultaneous evolution of both the spatial basis where uncertainty ‘lives’ but also the stochastic characteristics of uncertainty. Recently, Cheng et al. (2013) [28] introduced an alternative approach, the bi-orthogonal (BO) method, which performs the exact same tasks, i.e. it evolves the spatial basis and the stochastic characteristics of uncertainty. In the current work we examine the relation of the two approaches and we prove theoretically and illustrate numerically their equivalence, in the sense that one method is an exact reformulation of the other. We show this by deriving a linear and invertible transformation matrix described by a matrix differential equation that connects the BO and the DO solutions. We also examine a pathology of the BO equations that occurs when two eigenvalues of the solution cross, resulting in an instantaneous, infinite-speed, internal rotation of the computed spatial basis. We demonstrate that despite the instantaneous duration of the singularity this has important implications on the numerical performance of the BO approach. On the other hand, it is observed that the BO is more stable in nonlinear problems involving a relatively large number of modes. Several examples, linear and nonlinear, are presented to illustrate the DO and BO methods as well as their equivalence.

  13. Effects of Xuebijing injection on microcirculation in septic shock.

    PubMed

    Wang, Liang; Liu, Zhiyong; Dong, Zhe; Pan, Jieyi; Ma, Xiaochun

    2016-05-01

    This study was conducted to investigate whether Xuebijing injection can rectify the dysfunction of microcirculation in septic shock and assessed the microcirculatory parameters directly via orthogonal polarization spectral and software AVA 3.0. Anesthetized and mechanically ventilated beagle dogs were modeled for septic shock via lipopolysaccharide (LPS) intravenous injection. They were divided randomly into four groups, control group accepted operation only for jejunostomy and cystostomy; LPS group accepted operation and LPS intravenous injection; saline group accepted operation, LPS intravenous injection, and saline resuscitation; XBJ group accepted operation, LPS intravenous injection, saline resuscitation, and Xuebijing injection infusion. The MAP was recorded via right femoral artery catheterization, at the same time, the blood gas analysis was taken via that pathway at the set time points. ScvO2 was obtained via right jugular vein catheterization at the related time points. Microcirculatory parameters were recorded by orthogonal polarization spectral via the jejunum stoma, and the microcirculation image was analyzed via the software AVA 3.0 later. Xuebijing injection improved microcirculation of the jejunum villus in canine model of septic shock induced by endotoxin, especially for the proportion of perfused vessels. Based on the adequate fluid resuscitation, Xuebijing injection plays a helpful role of improving microcirculation in septic shock. Copyright © 2016 Elsevier Inc. All rights reserved.

  14. Identification of Stachybotrys spp. by MALDI-TOF mass spectrometry.

    PubMed

    Ulrich, Sebastian; Biermaier, Barbara; Bader, Oliver; Wolf, Georg; Straubinger, Reinhard K; Didier, Andrea; Sperner, Brigitte; Schwaiger, Karin; Gareis, Manfred; Gottschalk, Christoph

    2016-11-01

    Stachybotrys (S.) spp. are omnipresent cellulolytic molds. Some species are highly toxic owing to their ability to synthesize various secondary metabolites such as macrocyclic trichothecenes or hemolysins. The reliable identification of Stachybotrys at species level is currently limited to genome-based identification. This study aimed to establish a fast and reliable MALDI-TOF MS identification method by optimizing the pre-analytical steps for protein extraction for subsequent generation of high-quality fingerprint mass spectra. Eight reference strains of the American Type Culture Collection and the Technical University of Denmark were cultivated in triplicate (biological repetitions) for 2 days in malt extract broth. The mycelia (1.5 ml) were first washed with 75 % ethanol and an additional washing step with dimethyl sulfoxide (10 %) was added to remove unspecific low weight masses. Furthermore, mycelia were broken with roughened glass beads in formic acid (70 %) and acetonitrile. The method was successfully applied to a total of 45 isolates of Stachybotrys originating from three different habitats (indoor, feed, and food samples; n = 15 each): Twenty-seven isolates of S. chartarum and 18 isolates of S. chlorohalonata could be identified by MALDI-TOF MS. The data obtained exactly matched those obtained by genome-based identification. The mean score values for S. chartarum ranged from 2.509 to 2.739 and from 2.148 to 2.622 for S. chlorohalonata with a very good reproducibility: the relative standard deviations were between 0.3 % and 6.8 %. Thus, MALDI-TOF MS proved to be a fast and reliable alternative to identification of Stachybotrys spp. by nucleotide amplification and sequencing.

  15. Dissemination of data measured at the CERN n_TOF facility

    NASA Astrophysics Data System (ADS)

    Dupont, E.; Otuka, N.; Cabellos, O.; Aberle, O.; Aerts, G.; Altstadt, S.; Alvarez, H.; Alvarez-Velarde, F.; Andriamonje, S.; Andrzejewski, J.; Audouin, L.; Bacak, M.; Badurek, G.; Balibrea, J.; Barbagallo, M.; Barros, S.; Baumann, P.; Bécares, V.; Bečvář, F.; Beinrucker, C.; Belloni, F.; Berthier, B.; Berthoumieux, E.; Billowes, J.; Boccone, V.; Bosnar, D.; Brown, A.; Brugger, M.; Caamaño, M.; Calviani, M.; Calviño, F.; Cano-Ott, D.; Capote, R.; Cardella, R.; Carrapiço, C.; Casanovas, A.; Castelluccio, D. M.; Cennini, P.; Cerutti, F.; Chen, Y. H.; Chiaveri, E.; Chin, M.; Colonna, N.; Cortés, G.; Cortés-Giraldo, M. A.; Cosentino, L.; Couture, A.; Cox, J.; Damone, L. A.; David, S.; Deo, K.; Diakaki, M.; Dillmann, I.; Domingo-Pardo, C.; Dressler, R.; Dridi, W.; Duran, I.; Eleftheriadis, C.; Embid-Segura, M.; Fernández-Domínguez, B.; Ferrant, L.; Ferrari, A.; Ferreira, P.; Finocchiaro, P.; Fraval, K.; Frost, R. J. W.; Fujii, K.; Furman, W.; Ganesan, S.; Garcia, A. R.; Gawlik, A.; Gheorghe, I.; Gilardoni, S.; Giubrone, G.; Glodariu, T.; Göbel, K.; Gomez-Hornillos, M. B.; Goncalves, I. F.; Gonzalez-Romero, E.; Goverdovski, A.; Gramegna, F.; Griesmayer, E.; Guerrero, C.; Gunsing, F.; Gurusamy, P.; Haight, R.; Harada, H.; Heftrich, T.; Heil, M.; Heinitz, S.; Hernández-Prieto, A.; Heyse, J.; Igashira, M.; Isaev, S.; Jenkins, D. G.; Jericha, E.; Kadi, Y.; Kaeppeler, F.; Kalamara, A.; Karadimos, D.; Karamanis, D.; Katabuchi, T.; Kavrigin, P.; Kerveno, M.; Ketlerov, V.; Khryachkov, V.; Kimura, A.; Kivel, N.; Kokkoris, M.; Konovalov, V.; Krtička, M.; Kroll, J.; Kurtulgil, D.; Lampoudis, C.; Langer, C.; Leal-Cidoncha, E.; Lederer, C.; Leeb, H.; Naour, C. Le; Lerendegui-Marco, J.; Leong, L. S.; Licata, M.; Meo, S. Lo; Lonsdale, S. J.; Losito, R.; Lozano, M.; Macina, D.; Manousos, A.; Marganiec, J.; Martinez, T.; Marrone, S.; Masi, A.; Massimi, C.; Mastinu, P.; Mastromarco, M.; Matteucci, F.; Maugeri, E. A.; Mazzone, A.; Mendoza, E.; Mengoni, A.; Milazzo, P. M.; Mingrone, F.; Mirea, M.; Mondelaers, W.; Montesano, S.; Moreau, C.; Mosconi, M.; Musumarra, A.; Negret, A.; Nolte, R.; O'Brien, S.; Oprea, A.; Palomo-Pinto, F. R.; Pancin, J.; Paradela, C.; Patronis, N.; Pavlik, A.; Pavlopoulos, P.; Perkowski, J.; Perrot, L.; Pigni, M. T.; Plag, R.; Plompen, A.; Plukis, L.; Poch, A.; Porras, I.; Praena, J.; Pretel, C.; Quesada, J. M.; Radeck, D.; Rajeev, K.; Rauscher, T.; Reifarth, R.; Riego, A.; Robles, M.; Roman, F.; Rout, P. C.; Rudolf, G.; Rubbia, C.; Rullhusen, P.; Ryan, J. A.; Sabaté-Gilarte, M.; Salgado, J.; Santos, C.; Sarchiapone, L.; Sarmento, R.; Saxena, A.; Schillebeeckx, P.; Schmidt, S.; Schumann, D.; Sedyshev, P.; Smith, A. G.; Sosnin, N. V.; Stamatopoulos, A.; Stephan, C.; Suryanarayana, S. V.; Tagliente, G.; Tain, J. L.; Tarifeño-Saldivia, A.; Tarrío, D.; Tassan-Got, L.; Tavora, L.; Terlizzi, R.; Tsinganis, A.; Valenta, S.; Vannini, G.; Variale, V.; Vaz, P.; Ventura, A.; Versaci, R.; Vermeulen, M. J.; Villamarin, D.; Vicente, M. C.; Vlachoudis, V.; Vlastou, R.; Voss, F.; Wallner, A.; Walter, S.; Ware, T.; Warren, S.; Weigand, M.; Weiß, C.; Wolf, C.; Wiesher, M.; Wisshak, K.; Woods, P. J.; Wright, T.; Žugec, P.

    2017-09-01

    The n_TOF neutron time-of-flight facility at CERN is used for high quality nuclear data measurements from thermal energy up to hundreds of MeV. In line with the CERN open data policy, the n_TOF Collaboration takes actions to preserve its unique data, facilitate access to them in standardised format, and allow their re-use by a wide community in the fields of nuclear physics, nuclear astrophysics and various nuclear technologies. The present contribution briefly describes the n_TOF outcomes, as well as the status of dissemination and preservation of n_TOF final data in the international EXFOR library.

  16. Retrospective data-driven respiratory gating for PET using TOF information.

    PubMed

    Mengdie Wang; Ning Guo; Hui Zhang; Elfhakri, Georges; Guangshu Hu; Quanzheng Li

    2015-08-01

    Traditional data-driven respiratory gating method is capable of detecting breathing cycles directly from positron emission tomography (PET) data, but usually fails at low SNR, particularly at low dose PET/CT study. Time-of-flight (TOF) PET has the potential to improve the SNR. In order for TOF information to reduce the statistical noise and boost the performance of respiratory gating, we present a robust data-driven respiratory gating method using TOF information, which retrospectively derived the respiratory signal from the acquired TOF-PET data. The PET data was acquired in list mode format and analyzed in sinogram space. The method was demonstrated with patient datasets acquired on a TOF PET/CT system. Data-driven gating methods by center of mass (COM) and principle component analysis (PCA) algorithm were successfully performed on nonTOF PET and TOF PET dataset. To assess the accuracy of the data-driven respiratory signal, a hardware-based signal was acquired for comparison. The study showed that retrospectively respiratory gating using TOF sinograms has improved the SNR, and outperforms the non-TOF gating under both COM and PCA algorithms.

  17. [Studies of bacterial typing with MALDI-TOF].

    PubMed

    Culebras, Esther; Alvarez-Buylla, Adela; Jose Artacho Reinoso, M; Antonio Lepe, Jose

    2016-06-01

    MALDI-TOF (matrix-assisted laser desorption ionization time-of-flight) mass spectrometry has emerged as a potential tool for microbial characterization and identification in many microbiology departments. The technology is rapid, sensitive, and relatively inexpensive in terms of both the labour and costs involved. This review provides an overview on its utility for strain typing and epidemiological studies and explains the methodological approaches that can be used both for the performance of the technique and for the analysis of results. Finally, the review summarizes studies on the characterization of distinct bacterial species. Copyright © 2016 Elsevier España, S.L.U. All rights reserved.

  18. Long-distance eye-safe laser TOF camera design

    NASA Astrophysics Data System (ADS)

    Kovalev, Anton V.; Polyakov, Vadim M.; Buchenkov, Vyacheslav A.

    2016-04-01

    We present a new TOF camera design based on a compact actively Q-switched diode pumped solid-state laser operating in 1.5 μm range and a receiver system based on a short wave infrared InGaAs PIN diodes focal plane array with an image intensifier and a special readout integration circuit. The compact camera is capable of depth imaging up to 4 kilometers with 10 frame/s and 1.2 m error. The camera could be applied for airborne and space geodesy location and navigation.

  19. MONSTER: a TOF Spectrometer for β-delayed Neutron Spectroscopy

    SciTech Connect

    Martínez, T.; Cano-Ott, D.; Castilla, J.; Garcia, A.R.; Marin, J.; Martinez, G.; Mendoza, E.; Santos, C.; Tera, F.J.; Villamarin, D.; Agramunt, J.; Algora, A.; Domingo, C.; Jordan, M.D.; Rubio, B.; Taín, J.L.; Bhattacharya, C.; Banerjee, K.; Bhattacharya, S.; Roy, P.; and others

    2014-06-15

    β-delayed neutron (DN) data, including emission probabilities, Pn, and energy spectrum, play an important role in our understanding of nuclear structure, nuclear astrophysics and nuclear technologies. A MOdular Neutron time-of-flight SpectromeTER (MONSTER) is being built for the measurement of the neutron energy spectra and branching ratios. The TOF spectrometer will consist of one hundred liquid scintillator cells covering a significant solid angle. The MONSTER design has been optimized by using Monte Carlo (MC) techniques. The response function of the MONSTER cell has been characterized with mono-energetic neutron beams and compared to dedicated MC simulations.

  20. Characterization of the n_TOF EAR-2 neutron beam

    NASA Astrophysics Data System (ADS)

    Chen, Y. H.; Tassan-Got, L.; Audouin, L.; Le Naour, C.; Durán, I.; Casarejos, E.; Aberle, O.; Andrzejewski, J.; Bécares, V.; Bacak, M.; Balibrea, J.; Barbagallo, M.; Barros, S.; Bečvář, F.; Beinrucker, C.; Berthoumieux, E.; Billowes, J.; Bosnar, D.; Brugger, M.; Caamaño, M.; Calviño, F.; Calviani, M.; Cano-Ott, D.; Cardella, R.; Casanovas, A.; Castelluccio, D. M.; Cerutti, F.; Chiaveri, E.; Colonna, N.; Cortés, G.; Cortés-Giraldo, M. A.; Cosentino, L.; Damone, L. A.; Diakaki, M.; Domingo-Pardo, C.; Dressler, R.; Dupont, E.; Fernández-Domínguez, B.; Ferrari, A.; Ferreira, P.; Finocchiaro, P.; Furman, V.; Göbel, K.; Gómez-Hornillos, M. B.; García, A. R.; Gawlik, A.; Glodariu, T.; Gonçalves, I. F.; González, E.; Goverdovski, A.; Griesmayer, E.; Guerrero, C.; Gunsing, F.; Harada, H.; Heftrich, T.; Heinitz, S.; Heyse, J.; Jenkins, D. G.; Jericha, E.; Käppeler, F.; Kadi, Y.; Katabuchi, T.; Kavrigin, P.; Ketlerov, V.; Khryachkov, V.; Kimura, A.; Kivel, N.; Kokkoris, M.; Krtička, M.; Leal-Cidoncha, E.; Lederer, C.; Leeb, H.; Lerendegui-Marco, J.; Meo, S. Lo; Lonsdale, S. J.; Losito, R.; Macina, D.; Marganiec, J.; Martínez, T.; Massimi, C.; Mastinu, P.; Mastromarco, M.; Matteucci, F.; Maugeri, E. A.; Mendoza, E.; Mengoni, A.; Milazzo, P. M.; Mingrone, F.; Mirea, M.; Montesano, S.; Musumarra, A.; Nolte, R.; Oprea, A.; Patronis, N.; Pavlik, A.; Perkowski, J.; Porras, J. I.; Praena, J.; Quesada, J. M.; Rajeev, K.; Rauscher, T.; Reifarth, R.; Riego-Perez, A.; Robles, M.; Rout, P. C.; Rubbia, C.; Ryan, J. A.; Sabaté-Gilarte, M.; Saxena, A.; Schillebeeckx, P.; Schmidt, S.; Schumann, D.; Sedyshev, P.; Smith, A. G.; Stamatopoulos, A.; Tagliente, G.; Tain, J. L.; Tarifeño-Saldivia, A.; Tsinganis, A.; Valenta, S.; Vannini, G.; Variale, V.; Vaz, P.; Ventura, A.; Vlachoudis, V.; Vlastou, R.; Wallner, A.; Warren, S.; Weigand, M.; Weiss, C.; Wolf, C.; Woods, P. J.; Wright, T.; Žugec, P.

    2017-09-01

    The experimental area 2 (EAR-2) at CERNs neutron time-of-flight facility (n_TOF), which is operational since 2014, is designed and built as a short-distance complement to the experimental area 1 (EAR-1). The Parallel Plate Avalanche Counter (PPAC) monitor experiment was performed to characterize the beam pro↓le and the shape of the neutron 'ux at EAR-2. The prompt γ-flash which is used for calibrating the time-of-flight at EAR-1 is not seen by PPAC at EAR-2, shedding light on the physical origin of this γ-flash.

  1. MONSTER: a TOF Spectrometer for β-delayed Neutron Spectroscopy

    NASA Astrophysics Data System (ADS)

    Martínez, T.; Cano-Ott, D.; Castilla, J.; Garcia, A. R.; Marin, J.; Martinez, G.; Mendoza, E.; Santos, C.; Tera, F. J.; Villamarin, D.; Agramunt, J.; Algora, A.; Domingo, C.; Jordan, M. D.; Rubio, B.; Taín, J. L.; Bhattacharya, C.; Banerjee, K.; Bhattacharya, S.; Roy, P.; Meena, J. K.; Kundu, S.; Mukherjee, G.; Ghosh, T. K.; Rana, T. K.; Pandey, R.; Saxena, A.; Behera, B.; Penttilä, H.; Jokinen, A.; Rinta-Antila, S.; Guerrero, C.; Ovejero, M. C.

    2014-06-01

    β-delayed neutron (DN) data, including emission probabilities, Pn, and energy spectrum, play an important role in our understanding of nuclear structure, nuclear astrophysics and nuclear technologies. A MOdular Neutron time-of-flight SpectromeTER (MONSTER) is being built for the measurement of the neutron energy spectra and branching ratios. The TOF spectrometer will consist of one hundred liquid scintillator cells covering a significant solid angle. The MONSTER design has been optimized by using Monte Carlo (MC) techniques. The response function of the MONSTER cell has been characterized with mono-energetic neutron beams and compared to dedicated MC simulations.

  2. Methods and composition for the production of orthogonal tRNA-aminoacyltRNA synthetase pairs

    DOEpatents

    Schultz, Peter G [La Jolla, CA; Wang, Lei [San Diego, CA; Anderson, John Christopher [San Diego, CA; Chin, Jason [Cambridge, GB; Liu, David R [Lexington, MA; Magliery, Thomas J [North Haven, CT; Meggers, Eric L [Philadelphia, PA; Mehl, Ryan Aaron [Lancaster, PA; Pastrnak, Miro [San Diego, CA; Santoro, Steven William [Cambridge, MA; Zhang, Zhiwen [San Diego, CA

    2008-04-08

    This invention provides compositions and methods for generating components of protein biosynthetic machinery including orthogonal tRNAs, orthogonal aminoacyl-tRNA synthetases, and orthogonal pairs of tRNAs/synthetases. Methods for identifying orthogonal pairs are also provided. These components can be used to incorporate unnatural amino acids into proteins in vivo.

  3. Methods and composition for the production of orthogonal tRNA-aminoacyltRNA synthetase pairs

    DOEpatents

    Schultz, Peter G [La Jolla, CA; Wang, Lei [San Diego, CA; Anderson, John Christopher [San Diego, CA; Chin, Jason [Cambridge, GB; Liu, David R [Lexington, MA; Magliery, Thomas J [North Haven, CT; Meggers, Eric L [Philadelphia, PA; Mehl, Ryan Aaron [Lancaster, PA; Pastrnak, Miro [San Diego, CA; Santoro, Steven William [Cambridge, MA; Zhang, Zhiwen [San Diego, CA

    2012-05-22

    This invention provides compositions and methods for generating components of protein biosynthetic machinery including orthogonal tRNAs, orthogonal aminoacyl-tRNA synthetases, and orthogonal pairs of tRNAs/synthetases. Methods for identifying orthogonal pairs are also provided. These components can be used to incorporate unnatural amino acids into proteins in vivo.

  4. Methods and compositions for the production of orthogonal tRNA-aminoacyl-tRNA synthetase pairs

    DOEpatents

    Schultz, Peter G [La Jolla, CA; Wang, Lei [San Diego, CA; Anderson, John Christopher [San Diego, CA; Chin, Jason W [San Diego, CA; Liu, David R [Lexington, MA; Magliery, Thomas J [North Haven, CT; Meggers, Eric L [Philadelphia, PA; Mehl, Ryan Aaron [San Diego, CA; Pastrnak, Miro [San Diego, CA; Santoro, Stephen William [San Diego, CA; Zhang, Zhiwen [San Diego, CA

    2011-09-06

    This invention provides compositions and methods for generating components of protein biosynthetic machinery including orthogonal tRNAs, orthogonal aminoacyl-tRNA synthetases, and orthogonal pairs of tRNAs/synthetases. Methods for identifying orthogonal pairs are also provided. These components can be used to incorporate unnatural amino acids into proteins in vivo.

  5. Carrier-interleaved orthogonal multi-electrode multi-carrier resistivity-measurement tool

    NASA Astrophysics Data System (ADS)

    Cai, Yu; Sha, Shuang

    2016-09-01

    This paper proposes a new carrier-interleaved orthogonal multi-electrode multi-carrier resistivity-measurement tool used in a cylindrical borehole environment during oil-based mud drilling processes. The new tool is an orthogonal frequency division multiplexing access-based contactless multi-measurand detection tool. The tool can measure formation resistivity in different azimuthal angles and elevational depths. It can measure many more measurands simultaneously in a specified bandwidth than the legacy frequency division multiplexing multi-measurand tool without a channel-select filter while avoiding inter-carrier interference. The paper also shows that formation resistivity is not sensitive to frequency in certain frequency bands. The average resistivity collected from N subcarriers can increase the measurement of the signal-to-noise ratio (SNR) by N times given no amplitude clipping in the current-injection electrode. If the clipping limit is taken into account, with the phase rotation of each single carrier, the amplitude peak-to-average ratio can be reduced by 3 times, and the SNR can achieve a 9/N times gain over the single-carrier system. The carrier-interleaving technique is also introduced to counter the carrier frequency offset (CFO) effect, where the CFO will cause inter-pad interference. A qualitative analysis and simulations demonstrate that block-interleaving performs better than tone-interleaving when coping with a large CFO. The theoretical analysis also suggests that increasing the subcarrier number can increase the measurement speed or enhance elevational resolution without sacrificing receiver performance. The complex orthogonal multi-pad multi-carrier resistivity logging tool, in which all subcarriers are complex signals, can provide a larger available subcarrier pool than other types of transceivers.

  6. Asymmetric flow field flow fractionation with light scattering detection - an orthogonal sensitivity analysis.

    PubMed

    Galyean, Anne A; Filliben, James J; Holbrook, R David; Vreeland, Wyatt N; Weinberg, Howard S

    2016-11-18

    Asymmetric flow field flow fractionation (AF(4)) has several instrumental factors that may have a direct effect on separation performance. A sensitivity analysis was applied to ascertain the relative importance of AF(4) primary instrument factor settings for the separation of a complex environmental sample. The analysis evaluated the impact of instrumental factors namely, cross flow, ramp time, focus flow, injection volume, and run buffer concentration on the multi-angle light scattering measurement of natural organic matter (NOM) molar mass (MM). A 2((5-1)) orthogonal fractional factorial design was used to minimize analysis time while preserving the accuracy and robustness in the determination of the main effects and interactions between any two instrumental factors. By assuming that separations resulting in smaller MM measurements would be more accurate, the analysis produced a ranked list of effects estimates for factors and interactions of factors based on their relative importance in minimizing the MM. The most important and statistically significant AF(4) instrumental factors were buffer concentration and cross flow. The least important was ramp time. A parallel 2((5-2)) orthogonal fractional factorial design was also employed on five environmental factors for synthetic natural water samples containing silver nanoparticles (NPs), namely: NP concentration, NP size, NOM concentration, specific conductance, and pH. None of the water quality characteristic effects or interactions were found to be significant in minimizing the measured MM; however, the interaction between NP concentration and NP size was an important effect when considering NOM recovery. This work presents a structured approach for the rigorous assessment of AF(4) instrument factors and optimal settings for the separation of complex samples utilizing efficient orthogonal factional factorial design and appropriate graphical analysis.

  7. Gas chromatography time-of-flight mass spectrometry (GC-TOF-MS)-based metabolomics for comparison of caffeinated and decaffeinated coffee and its implications for Alzheimer's disease.

    PubMed

    Chang, Kai Lun; Ho, Paul C

    2014-01-01

    Findings from epidemiology, preclinical and clinical studies indicate that consumption of coffee could have beneficial effects against dementia and Alzheimer's disease (AD). The benefits appear to come from caffeinated coffee, but not decaffeinated coffee or pure caffeine itself. Therefore, the objective of this study was to use metabolomics approach to delineate the discriminant metabolites between caffeinated and decaffeinated coffee, which could have contributed to the observed therapeutic benefits. Gas chromatography time-of-flight mass spectrometry (GC-TOF-MS)-based metabolomics approach was employed to characterize the metabolic differences between caffeinated and decaffeinated coffee. Orthogonal partial least squares discriminant analysis (OPLS-DA) showed distinct separation between the two types of coffee (cumulative Q(2) = 0.998). A total of 69 discriminant metabolites were identified based on the OPLS-DA model, with 37 and 32 metabolites detected to be higher in caffeinated and decaffeinated coffee, respectively. These metabolites include several benzoate and cinnamate-derived phenolic compounds, organic acids, sugar, fatty acids, and amino acids. Our study successfully established GC-TOF-MS based metabolomics approach as a highly robust tool in discriminant analysis between caffeinated and decaffeinated coffee samples. Discriminant metabolites identified in this study are biologically relevant and provide valuable insights into therapeutic research of coffee against AD. Our data also hint at possible involvement of gut microbial metabolism to enhance therapeutic potential of coffee components, which represents an interesting area for future research.

  8. Application of joint orthogonal bases in compressive sensing ghost image

    NASA Astrophysics Data System (ADS)

    Fan, Xiang; Chen, Yi; Cheng, Zheng-dong; Liang, Zheng-yu; Zhu, Bin

    2016-11-01

    Sparse decomposition is one of the core issue of compressive sensing ghost image. At this stage, traditional methods still have the problems of poor sparsity and low reconstruction accuracy, such as discrete fourier transform and discrete cosine transform. In order to solve these problems, joint orthogonal bases transform is proposed to optimize ghost imaging. First, introduce the principle of compressive sensing ghost imaging and point out that sparsity is related to the minimum sample data required for imaging. Then, analyze the development and principle of joint orthogonal bases in detail and find out it can use less nonzero coefficients to reach the same identification effect as other methods. So, joint orthogonal bases transform is able to provide the sparsest representation. Finally, the experimental setup is built in order to verify simulation results. Experimental results indicate that the PSNR of joint orthogonal bases is much higher than traditional methods by using same sample data in compressive sensing ghost image.Therefore, joint orthogonal bases transform can realize better imaging quality under less sample data, which can satisfy the system requirements of convenience and rapid speed in ghost image.

  9. A modular strategy for engineering orthogonal chimeric RNA transcription regulators

    PubMed Central

    Takahashi, Melissa K.; Lucks, Julius B.

    2013-01-01

    Antisense RNA transcription attenuators are a key component of the synthetic biology toolbox, with their ability to serve as building blocks for both signal integration logic circuits and transcriptional cascades. However, a central challenge to building more sophisticated RNA genetic circuitry is creating larger families of orthogonal attenuators that function independently of each other. Here, we overcome this challenge by developing a modular strategy to create chimeric fusions between the engineered transcriptional attenuator from plasmid pT181 and natural antisense RNA translational regulators. Using in vivo gene expression assays in Escherichia coli, we demonstrate our ability to create chimeric attenuators by fusing sequences from five different translational regulators. Mutagenesis of these functional attenuators allowed us to create a total of 11 new chimeric attenutaors. A comprehensive orthogonality test of these culminated in a 7 × 7 matrix of mutually orthogonal regulators. A comparison between all chimeras tested led to design principles that will facilitate further engineering of orthogonal RNA transcription regulators, and may help elucidate general principles of non-coding RNA regulation. We anticipate that our strategy will accelerate the development of even larger families of orthogonal RNA transcription regulators, and thus create breakthroughs in our ability to construct increasingly sophisticated RNA genetic circuitry. PMID:23761434

  10. Hyaluronidase alters the lipid profile of cumulus cells as detected by MALDI-TOF MS and multivariate analysis.

    PubMed

    Montani, Daniela Antunes; Regiani, Thaís; Victorino, Amanda Begati; Camillo, Jacqueline; Pilau, Eduardo Jorge; Gozzo, Fábio Cesar; Zylbersztejn, Daniel Suslik; Ferreira, Christina Ramires; Lo Turco, Edson Guimarães

    2014-09-01

    This research aimed to study the changes in lipid composition in cumulus cells using hyaluronidase according to the intracytoplasmic sperm injection protocol commonly used in human reproduction clinics. The lipid extraction was performed by the Blight-Dyer protocol and the lipid profiles were obtained by MALDI-TOF MS in positive and negative modes. The mass spectra data were processed with MassLynx and the statistical analysis was performed using MetaboAnalyst 2.0. Fifteen ions were selected for each mode as potential markers for differences between the groups. These ions were identified in the human metabolome database as phosphatidylserine with and without treatment, phosphatidylethanolamine in the after treatment group and phosphatidylinositol in the before treatment group, which are lipids that may be involved in cell apoptosis and signaling. We concluded that MALDI-TOF MS coupled with multivariate analysis can be utilized as a strategy to obtain and study the lipid profiles of cumulus cells and as a tool to study the metabolic state of cumulus cells.

  11. Prototype of time digitizing system for BESIII endcap TOF upgrade

    NASA Astrophysics Data System (ADS)

    Cao, Ping; Sun, Wei-Jia; Ji, Xiao-Lu; Fan, Huan-Huan; Wang, Si-Yu; Liu, Shu-Bin; An, Qi

    2014-04-01

    The prototype of a time digitizing system for the BESIII endcap TOF (ETOF) upgrade is introduced in this paper. The ETOF readout electronics has a distributed architecture. Hit signals from the multi-gap resistive plate chamber (MRPC) are signaled as LVDS by front-end electronics (FEE) and are then sent to the back-end time digitizing system via long shield differential twisted pair cables. The ETOF digitizing system consists of two VME crates, each of which contains modules for time digitization, clock, trigger, fast control, etc. The time digitizing module (TDIG) of this prototype can support up to 72 electrical channels for hit information measurement. The fast control (FCTL) module can operate in barrel or endcap mode. The barrel FCTL fans out fast control signals from the trigger system to the endcap FCTLs, merges data from the endcaps and then transfers to the trigger system. Without modifying the barrel TOF (BTOF) structure, this time digitizing architecture benefits from improved ETOF performance without degrading the BTOF performance. Lab experiments show that the time resolution of this digitizing system can be lower than 20 ps, and the data throughput to the DAQ can be about 92 Mbps. Beam experiments show that the total time resolution can be lower than 45 ps.

  12. On-line breath analysis with PTR-TOF.

    PubMed

    Herbig, Jens; Müller, Markus; Schallhart, Simon; Titzmann, Thorsten; Graus, Martin; Hansel, Armin

    2009-06-01

    We report on on-line breath gas analysis with a new type of analytical instrument, which represents the next generation of proton-transfer-reaction mass spectrometers. This time-of-flight mass spectrometer in combination with the soft proton-transfer-reaction ionization (PTR-TOF) offers numerous advantages for the sensitive detection of volatile organic compounds and overcomes several limitations. First, a time-of-flight instrument allows for a measurement of a complete mass spectrum within a fraction of a second. Second, a high mass resolving power enables the separation of isobaric molecules and the identification of their chemical composition. We present the first on-line breath measurements with a PTR-TOF and demonstrate the advantages for on-line breath analysis. In combination with buffered end-tidal (BET) sampling, we obtain a complete mass spectrum up to 320 Th within one exhalation with a signal-to-noise ratio sufficient to measure down to pptv levels. We exploit the high mass resolving power to identify the main components in the breath composition of several healthy volunteers.

  13. Positroid stratification of orthogonal Grassmannian and ABJM amplitudes

    NASA Astrophysics Data System (ADS)

    Kim, Joonho; Lee, Sangmin

    2014-09-01

    A novel understanding of scattering amplitudes in terms of on-shell diagrams and positive Grassmannian has been recently established for four dimensional Yang-Mills theories and three dimensional Chern-Simons theories of ABJM type. We give a detailed construction of the positroid stratification of orthogonal Grassmannian relevant for ABJM amplitudes. On-shell diagrams are classified by pairing of external particles. We introduce a combinatorial aid called `OG tableaux' and map each equivalence class of on-shell diagrams to a unique tableau. The on-shell diagrams related to each other through BCFW bridging are naturally grouped by the OG tableaux. Introducing suitably ordered BCFW bridges and positive coordinates, we construct the complete coordinate charts to cover the entire positive orthogonal Grassmannian for arbitrary number of external particles. The graded counting of OG tableaux suggests that the positive orthogonal Grassmannian constitutes a combinatorial polytope.

  14. Investigation of formation mechanisms of chips in orthogonal cutting process

    NASA Astrophysics Data System (ADS)

    Ma, W.

    2012-08-01

    This work investigates the formation mechanisms of chips in orthogonal cutting of mild steel and the transformation conditions between various morphology chips. It is supposed that the modeling material follows the Johnson-Cook constitutive model. In orthogonal cutting process, both the plastic flow and the instability behaviors of chip materials are caused by the plane strain loadings. Therefore, the general instability behaviors of materials in plane strain state are first analyzed with linear perturbation method and a universal instability criterion is established. Based on the analytical results, the formation mechanisms of chips and the transformation conditions between continuous and serrated chips are further studied by instability phase diagram method. The results show that the chip formation strongly depends on the intensity ratios between shear and normal stresses. The ratios of dissipative rates of plastic work done by compression and shear stresses govern the transformation from continuous to serrated chips. These results are verified by the numerical simulations on the orthogonal cutting process.

  15. Experimental quantum-cryptography scheme based on orthogonal states

    NASA Astrophysics Data System (ADS)

    Avella, Alessio; Brida, Giorgio; Degiovanni, Ivo Pietro; Genovese, Marco; Gramegna, Marco; Traina, Paolo

    2010-12-01

    Since, in general, nonorthogonal states cannot be cloned, any eavesdropping attempt in a quantum-communication scheme using nonorthogonal states as carriers of information introduces some errors in the transmission, leading to the possibility of detecting the spy. Usually, orthogonal states are not used in quantum-cryptography schemes since they can be faithfully cloned without altering the transmitted data. Nevertheless, L. Goldberg and L. Vaidman [Phys. Rev. Lett.PRLTAO0031-900710.1103/PhysRevLett.75.1239 75, 1239 (1995)] proposed a protocol in which, even if the data exchange is realized using two orthogonal states, any attempt to eavesdrop is detectable by the legal users. In this scheme the orthogonal states are superpositions of two localized wave packets traveling along separate channels. Here we present an experiment realizing this scheme.

  16. Experimental quantum-cryptography scheme based on orthogonal states

    SciTech Connect

    Avella, Alessio; Brida, Giorgio; Degiovanni, Ivo Pietro; Genovese, Marco; Gramegna, Marco; Traina, Paolo

    2010-12-15

    Since, in general, nonorthogonal states cannot be cloned, any eavesdropping attempt in a quantum-communication scheme using nonorthogonal states as carriers of information introduces some errors in the transmission, leading to the possibility of detecting the spy. Usually, orthogonal states are not used in quantum-cryptography schemes since they can be faithfully cloned without altering the transmitted data. Nevertheless, L. Goldberg and L. Vaidman [Phys. Rev. Lett. 75, 1239 (1995)] proposed a protocol in which, even if the data exchange is realized using two orthogonal states, any attempt to eavesdrop is detectable by the legal users. In this scheme the orthogonal states are superpositions of two localized wave packets traveling along separate channels. Here we present an experiment realizing this scheme.

  17. Bio-orthogonally Deciphered Binary Nanoemitters for Tumor Diagnostics.

    PubMed

    An, Hong-Wei; Qiao, Sheng-Lin; Li, Li-Li; Yang, Chao; Lin, Yao-Xin; Wang, Yi; Qiao, Zeng-Ying; Wang, Lei; Wang, Hao

    2016-08-03

    Bioinspired design concept has been recognized as one of the most promising strategies for discovering new biomaterials. However, smart biomaterials that are of growing interests in biomedical field need biological processability to meet their emergent applications in vivo. Herein, a new bio-orthogonally deciphered approach has been demonstrated for modulating optical properties of nanomaterials in living systems. The self-assembled nanoemitters based on cyanine-pyrene molecule 1 with inert optical property are designed and prepared. The structure and optical feature of the nanoemitters 1 can be efficiently and reliably modulated by a unique bio-orthogonal mechanism with abundant glutathione (GSH) as an activator. As a result, the self-assembled nanoemitters 1 spontaneously exhibits binary emissions for high-performance tumor imaging in vivo. We believe that this bio-orthogonally deciphered strategy opens a new avenue for designing variable smart biomaterials or devices in biomedical applications.

  18. All Possible Cayley-Klein Contractions of Quantum Orthogonal Groups

    SciTech Connect

    Gromov, N.A.; Kuratov, V.V.

    2005-10-01

    Spaces of constant curvature and their motion groups are described most naturally in the Cartesian basis. All these motion groups, also known as CK groups, are obtained from an orthogonal group by contractions and analytical continuations. On the other hand, quantum deformation of orthogonal group SO(N) is most easily performed in the so-called symplectic basis. We reformulate its standard quantum deformation to the Cartesian basis and obtain all possible contractions of quantum orthogonal group SO{sub q}(N) for both untouched and transformed deformation parameters. It turned out that, similar to the undeformed case, all CK contractions of SO{sub q}(N) are realized. An algorithm for obtaining nonequivalent (as Hopf algebra) contracted quantum groups is suggested. Contractions of SO{sub q}(N), N = 3, 4, 5, are regarded as examples.

  19. Simultaneous expansion and orthogonalization of measured modes for structure identification

    NASA Technical Reports Server (NTRS)

    Smith, Suzanne Weaver; Beattie, Christopher A.

    1990-01-01

    Tests of large structures on-orbit will be performed with measurements at a relatively few structure points. Values for the unmeasured degrees of freedom (dofs) can be estimated based on measured dofs and analytical model dynamic information. These 'expanded' mode shapes are useful for optimal-update identification and damage location as well as test/analysis correlation. A new method of expansion for test mode shape vectors is developed from the orthogonal Procrustes problem from computational linear algebra. A subspace defined by the set of measured dofs is compared to a subspace defined by mode shapes from an analytical model of the structure. The method simultaneously expands and orthogonalizes the mode shape vectors. Two demonstration problems are used to compare the new method to current expansion techniques. One demonstration uses test data from a laboratory scale-model truss structure. Performance of the new method is comparable or superior to that of the previous expansion methods which require separate orthogonalization.

  20. Semi-orthogonal wavelets for elliptic variational problems

    SciTech Connect

    Hardin, D.P.; Roach, D.W.

    1998-04-01

    In this paper the authors give a construction of wavelets which are (a) semi-orthogonal with respect to an arbitrary elliptic bilinear form a({center_dot},{center_dot}) on the Sobolev space H{sub 0}{sup 1}((0, L)) and (b) continuous and piecewise linear on an arbitrary partition of [0, L]. They illustrate this construction using a model problem. They also construct alpha-orthogonal Battle-Lemarie type wavelets which fully diagonalize the Galerkin discretized matrix for the model problem with domain IR. Finally they describe a hybrid basis consisting of a combination of elements from the semi-orthogonal wavelet basis and the hierarchical Schauder basis. Numerical experiments indicate that this basis leads to robust scalable Galerkin discretizations of the model problem which remain well-conditioned independent of {epsilon}, L, and the refinement level K.

  1. Locally indistinguishable orthogonal product bases in arbitrary bipartite quantum system

    PubMed Central

    Xu, Guang-Bao; Yang, Ying-Hui; Wen, Qiao-Yan; Qin, Su-Juan; Gao, Fei

    2016-01-01

    As we know, unextendible product basis (UPB) is an incomplete basis whose members cannot be perfectly distinguished by local operations and classical communication. However, very little is known about those incomplete and locally indistinguishable product bases that are not UPBs. In this paper, we first construct a series of orthogonal product bases that are completable but not locally distinguishable in a general m ⊗ n (m ≥ 3 and n ≥ 3) quantum system. In particular, we give so far the smallest number of locally indistinguishable states of a completable orthogonal product basis in arbitrary quantum systems. Furthermore, we construct a series of small and locally indistinguishable orthogonal product bases in m ⊗ n (m ≥ 3 and n ≥ 3). All the results lead to a better understanding of the structures of locally indistinguishable product bases in arbitrary bipartite quantum system. PMID:27503634

  2. Superposition of an orthogonal oscillation to study anisotropy in polymers

    NASA Astrophysics Data System (ADS)

    Coletti, Marco; Pepi, Renzo

    2014-05-01

    Rheology is routinely used to assess visco-elastic properties and structure of polymers, both in the melt state and in solution. Standard rheometers, though, can apply shear or oscillation in one direction, only. Several systems show a clear anisotropic behavior when tested along different directions, but a typical rheometer cannot perform such 2D deformation. In this paper we propose a different approach to such a characterization, where a controlled oscillation is applied in an orthogonal direction with respect to shear or oscillation. This technique is capable of revealing additional information on how samples behave in two directions, since it is either possible to superimpose the orthogonal oscillation to a constant shear (Orthogonal SuperPosition: OSP) or to another oscillation in the shear direction (2D SAOS).

  3. Studies of charge transport in DNA films using the time-of-flight (TOF) technique

    NASA Astrophysics Data System (ADS)

    Yaney, Perry P.; Gorman, Timothy; Ouchen, Fahima; Grote, James G.

    2011-09-01

    Measurements were carried out on salmon DNA-based films, including as-received DNA (molecular weight, MW>2000 kDa) without and with hexacetyltrimethl-ammonium chloride (CTMA) surfactant, and sonicated DNA of MW~200 kDa with CTMA. The test specimens were spin-coated or drop-cast films on ITO-coated quartz slides with a gold charge-collecting electrode. To protect the films from atmospheric influences, the TOF devices were coated with a 200-400 nm polyurethane passivation layer. A quadrupled 20 ns, pulsed Nd:YAG laser with output at 266 nm was used for charge injection. The room temperature photoconductive transients were dispersive to varying degrees with hole mobilities in DNA materials films ranging between 2E-5 to 6E-3 cm2/Vs for fields ranging from 8 to 58 kV/cm. Only hole response was observed in DNA. The dispersive data were analyzed using a simple, quasi-empirical equation for the photocurrent transient data.

  4. Modelling Trends in Ordered Correspondence Analysis Using Orthogonal Polynomials.

    PubMed

    Lombardo, Rosaria; Beh, Eric J; Kroonenberg, Pieter M

    2016-06-01

    The core of the paper consists of the treatment of two special decompositions for correspondence analysis of two-way ordered contingency tables: the bivariate moment decomposition and the hybrid decomposition, both using orthogonal polynomials rather than the commonly used singular vectors. To this end, we will detail and explain the basic characteristics of a particular set of orthogonal polynomials, called Emerson polynomials. It is shown that such polynomials, when used as bases for the row and/or column spaces, can enhance the interpretations via linear, quadratic and higher-order moments of the ordered categories. To aid such interpretations, we propose a new type of graphical display-the polynomial biplot.

  5. Generalized Discriminant Orthogonal Nonnegative Tensor Factorization for Facial Expression Recognition

    PubMed Central

    XiuJun, Zhang; Chang, Liu

    2014-01-01

    In order to overcome the limitation of traditional nonnegative factorization algorithms, the paper presents a generalized discriminant orthogonal non-negative tensor factorization algorithm. At first, the algorithm takes the orthogonal constraint into account to ensure the nonnegativity of the low-dimensional features. Furthermore, the discriminant constraint is imposed on low-dimensional weights to strengthen the discriminant capability of the low-dimensional features. The experiments on facial expression recognition have demonstrated that the algorithm is superior to other non-negative factorization algorithms. PMID:24982970

  6. An online incremental orthogonal component analysis method for dimensionality reduction.

    PubMed

    Zhu, Tao; Xu, Ye; Shen, Furao; Zhao, Jinxi

    2017-01-01

    In this paper, we introduce a fast linear dimensionality reduction method named incremental orthogonal component analysis (IOCA). IOCA is designed to automatically extract desired orthogonal components (OCs) in an online environment. The OCs and the low-dimensional representations of original data are obtained with only one pass through the entire dataset. Without solving matrix eigenproblem or matrix inversion problem, IOCA learns incrementally from continuous data stream with low computational cost. By proposing an adaptive threshold policy, IOCA is able to automatically determine the dimension of feature subspace. Meanwhile, the quality of the learned OCs is guaranteed. The analysis and experiments demonstrate that IOCA is simple, but efficient and effective.

  7. Empirical orthogonal functions and normal modes. [for atmospheric data studies

    NASA Technical Reports Server (NTRS)

    North, G. R.

    1984-01-01

    An attempt to provide physical insight into the empirical orthogonal function (EOF) representation of data fields by the study of fields generated by linear stochastic models is presented in this paper. In a large class of these models, the EOFs at individual Fourier frequencies coincide with the orthogonal mechanical modes of the system - provided they exist. The precise mathematical criteria for this coincidence are derived and a physical interpretation is provided. A scheme possibly useful in forecasting is formally constructed for representing any stochastic field by a linear Hermitian model forced by noise.

  8. Uniform Asymptotics of Orthogonal Polynomials Arising from Coherent States

    NASA Astrophysics Data System (ADS)

    Dai, Dan; Hu, Weiying; Wang, Xiang-Sheng

    2015-08-01

    In this paper, we study a family of orthogonal polynomials {φ_n(z)} arising from nonlinear coherent states in quantum optics. Based on the three-term recurrence relation only, we obtain a uniform asymptotic expansion of φ_n(z) as the polynomial degree n tends to infinity. Our asymptotic results suggest that the weight function associated with the polynomials has an unusual singularity, which has never appeared for orthogonal polynomials in the Askey scheme. Our main technique is the Wang and Wong's difference equation method. In addition, the limiting zero distribution of the polynomials φ_n(z) is provided.

  9. Connection preserving deformations and q-semi-classical orthogonal polynomials

    NASA Astrophysics Data System (ADS)

    Ormerod, Christopher M.; Witte, N. S.; Forrester, Peter J.

    2011-09-01

    We present a framework for the study of q-difference equations satisfied by q-semi-classical orthogonal systems. As an example, we identify the q-difference equation satisfied by a deformed version of the little q-Jacobi polynomials as a gauge transformation of a special case of the associated linear problem for q-PVI. We obtain a parametrization of the associated linear problem in terms of orthogonal polynomial variables and find the relation between this parametrization and that of Jimbo and Sakai.

  10. Post-functionalization of polymers via orthogonal ligation chemistry.

    PubMed

    Goldmann, Anja S; Glassner, Mathias; Inglis, Andrew J; Barner-Kowollik, Christopher

    2013-05-27

    The establishment of advanced living/controlled polymerization protocols allows for engineering synthetic polymers in a precise fashion. Combining advanced living/controlled polymerization techniques with highly efficient coupling chemistries facilitates quantitative, modular, and orthogonal functionalization of synthetic polymer strands at their chain termini as well as side-chain functionalization. The review highlights the current status of selected post-functionalization techniques of polymers via orthogonal ligation chemistries, major characteristics of the specific transformation chemistry, as well as the characterization of the products.

  11. Inverse spin Hall effect by spin injection

    NASA Astrophysics Data System (ADS)

    Liu, S. Y.; Horing, Norman J. M.; Lei, X. L.

    2007-09-01

    Motivated by a recent experiment [S. O. Valenzuela and M. Tinkham, Nature (London) 442, 176 (2006)], the authors present a quantitative microscopic theory to investigate the inverse spin-Hall effect with spin injection into aluminum considering both intrinsic and extrinsic spin-orbit couplings using the orthogonalized-plane-wave method. Their theoretical results are in good agreement with the experimental data. It is also clear that the magnitude of the anomalous Hall resistivity is mainly due to contributions from extrinsic skew scattering.

  12. Complementary b/y fragment ion pairs from post-source decay of metastable YahO for calibration of MALDI-TOF-TOF-MS/MS

    USDA-ARS?s Scientific Manuscript database

    Complementary b/y fragment ion pairs from post-source decay (PSD) of metastable YahO protein ion were evaluated for use in the calibration of MALDI-TOF-TOF for tandem mass spectrometry (MS/MS). The yahO gene from pathogenic Escherichia coli O157:H7 strain EDL933 was cloned into a pBAD18 plasmid vect...

  13. Proteome analysis of excretory-secretory proteins of Entamoeba histolytica HM1:IMSS via LC-ESI-MS/MS and LC-MALDI-TOF/TOF.

    PubMed

    Ujang, Jorim Anak; Kwan, Soon Hong; Ismail, Mohd Nazri; Lim, Boon Huat; Noordin, Rahmah; Othman, Nurulhasanah

    2016-01-01

    Excretory-secretory (ES) proteins of E. histolytica are thought to play important roles in the host invasion, metabolism, and defence. Elucidation of the types and functions of E. histolytica ES proteins can further our understanding of the disease pathogenesis. Thus, the aim of this study is to use proteomics approach to better understand the complex ES proteins of the protozoa. E. histolytica ES proteins were prepared by culturing the trophozoites in protein-free medium. The ES proteins were identified using two mass spectrometry tools, namely, LC-ESI-MS/MS and LC-MALDI-TOF/TOF. The identified proteins were then classified according to their biological processes, molecular functions, and cellular components using the Panther classification system (PantherDB). A complementary list of 219 proteins was identified; this comprised 201 proteins detected by LC-ESI-MS/MS and 107 proteins by LC-MALDI-TOF/TOF. Of the 219 proteins, 89 were identified by both mass-spectrometry systems, while 112 and 18 proteins were detected exclusively by LC-ESI-MS/MS and LC-MALDI-TOF/TOF respectively. Biological protein functional analysis using PantherDB showed that 27% of the proteins were involved in metabolic processes. Using molecular functional and cellular component analyses, 35% of the proteins were found to be involved in catalytic activity, and 21% were associated with the cell parts. This study showed that complementary use of LC-ESI-MS/MS and LC-MALDI-TOF/TOF has improved the identification of ES proteins. The results have increased our understanding of the types of proteins excreted/secreted by the amoeba and provided further evidence of the involvement of ES proteins in intestinal colonisation and evasion of the host immune system, as well as in encystation and excystation of the parasite.

  14. Sodiation as a tool for enhancing the diagnostic value of MALDI-TOF/TOF-MS spectra of complex astaxanthin ester mixtures from Haematococcus pluvialis.

    PubMed

    Weesepoel, Yannick; Vincken, Jean-Paul; Pop, Raluca Maria; Liu, Kun; Gruppen, Harry

    2013-07-01

    The microalga Haematococcus pluvialis produces the pigment astaxanthin mainly in esterified form with a multitude of fatty acids, which results in a complex mixture of carotenol mono- and diesters. For rapid fingerprinting of these esters, matrix-assisted laser desorption ionization time of flight mass spectrometry (MALDI-TOF/TOF-MS) might be an alternative to traditional chromatographic separation combined with MS. Investigation of ionization and fragmentation of astaxanthin mono- and diester palmitate standards in MALDI-TOF/TOF-MS showed that sodium adduct parent masses [M + Na](+) gave much simpler MS(2) spectra than radical / protonated [M](+●) / [M + H](+) parents. [M + Na](+) fragments yielded diagnostic polyene-specific eliminations and fatty acid neutral losses, whereas [M](+●) / [M + H](+) fragmentation resulted in a multitude of non-diagnostic daughters. For diesters, a benzonium fragment, formed by polyene elimination, was required for identification of the second fatty acid attached to the astaxanthin backbone. Parents were forced into [M + Na](+) ionization by addition of sodium acetate, and best signal-to-noise ratios were obtained in the 0.1 to 1.0 mM range. This method was applied to fingerprinting astaxanthin esters in a crude H. pluvialis extract. Prior to MALDI-TOF/TOF-MS, the extract was fractionated by normal phase Flash chromatography to obtain fractions enriched in mono- and diesters and to remove pheophytin a, which compromised monoester signals. All 12 types of all-trans esterified esters found in LC were identified with MALDI-TOF/TOF-MS, with the exception of two minor monoesters.

  15. Profiling of Serum Metabolites Using MALDI-TOF and Triple-TOF Mass Spectrometry to Develop a Screen for Ovarian Cancer.

    PubMed

    Lee, Jun Hwa; Kim, Yun Hwan; Kim, Kyung-Hee; Cho, Jae Youl; Woo, Sang Myung; Yoo, Byong Chul; Kim, Seung Cheol

    2017-09-18

    We sought to develop a matrix assisted laser desorption ionization-time of flight (MALDI-TOF)-based, ovarian cancer (OVC), low-mass-ion discriminant equation (LOME) and to evaluate a possible supportive role for triple-TOF mass analysis in identifying metabolic biomarkers. A total of 114 serum samples from patients with OVC and benign ovarian tumors were subjected to MALDI-TOF analysis and a total of 137 serum samples from healthy female individuals and patients with OVC, colorectal cancer, hepatobiliary cancer, and pancreatic cancer were subjected to triple-TOF analysis. An OVC LOME was constructed by reference to the peak intensity ratios of discriminatory low-mass ion (LMI) pairs. Triple-TOF analysis was used to select and identify metabolic biomarkers for OVC screening. Three OVC LOMEs were finally constructed using discriminatory LMI pairs (137.1690 and 84.4119 m/z; 496.5022 and 709.7642 m/z; and 524.5614 and 709.7642 m/z); all afforded accuracies of >90%. The LMIs at 496.5022 m/z and 524.5614 m/z were those of lysophosphatidylcholine (LPC) 16:0 and LPC 18:0. Triple-TOF analysis selected seven discriminative LMIs; each LMI had a specificity >90%. Of the seven LMIs, four with a 137.0455 m/z ion at retention times of 2.04-3.14 minutes were upregulated in sera from OVC patients; the ion was identified as that derived from hypoxanthine. MALDI-TOF-based OVC LOMEs combined with triple-TOF-based OVC metabolic biomarkers allow reliable OVC screening; the techniques are mutually complementary both quantitatively and qualitatively.

  16. Identification of citrullinated peptides in the synovial fluid of patients with rheumatoid arthritis using LC-MALDI-TOF/TOF.

    PubMed

    Wang, Fei; Chen, Fang-Fang; Gao, Wen-Bo; Wang, Hai-Yong; Zhao, Ning-Wei; Xu, Min; Gao, De-Yu; Yu, Wei; Yan, Xiao-Ling; Zhao, Jian-Ning; Li, Xiao-Jun

    2016-09-01

    The objective of the study is to investigate potential citrullinated autoantigens as targets of anti-citrullinated protein antibodies (ACPAs) response in synovial fluids (SFs) of patients with rheumatoid arthritis (RA). SFs from six RA patients and six osteoarthritis (OA) patients as controls were collected. The citrullinated proteins in SFs were extracted by immunoprecipitation with rabbit anti-citrulline antibodies. Matrix-assisted laser desorption/ionization time of flight mass spectrometry/time of flight mass spectrometry (MALDI-TOF/TOF) mass spectrometry was subsequently performed to discover a characteristic neutral loss to finally determine citrullinated autoantigens. A total of 182 citrullinated peptides and 200 citrullinated sites were identified in RA SFs, while 3 citrullinated peptides and 4 citrullinated sites were identified in OA SFs. The 182 citrullinated peptides from RA SFs and the 3 citrullinated peptides from OA SFs were derived from 83 and 3 autoantigens, respectively. Eighty-three autoantigens except protein-arginine deiminase type-2 (PADI2) and protein-arginine deiminase type-2 (PADI4) were over-citrullinated compared with controls, and the citrullinated sites of PADI2 and PADI4 were different in two groups. Interestingly, citrullinated histone H3.3 (H3F3A) was found in OA controls, but not in RA groups. The differential citrullinated proteins identified in RA SFs suggested potential autoantigens were targeted for ACPAs response and might contribute to the induction and perpetuation of complement activation and joint inflammation in RA.

  17. Collision Energetics in a Tandem Time-of-Flight (TOF/TOF) Mass Spectrometer with a Curved-Field Reflectron

    PubMed Central

    Ilchenko, Serguei; Cotter, Robert J.

    2007-01-01

    Collisions of fullerene ions (C60+) with helium and neon were carried out over a range of laboratory energies (3–20 keV) on a unique tandem time-of-flight (TOF/TOF) mass spectrometer equipped with a curved-field reflectron (CFR). The CFR enables focusing of product ions over a wide kinetic energy range. Thus, ions extracted from a laser desorption/ionization (LDI) source are not decelerated prior to collision, and collision energies in the laboratory frame are determined by the source extraction voltages. Comparison of product ion mass spectra obtained following collisions with inert gases show a time (and apparent mass) shift for product ions relative to those observed in spectra obtained by metastable dissociation (unimolecular decay), consistent with impulse collision models, in which interactions of helium with fullerene in the high energy range are primarily with a single carbon atom. In addition, within a narrow range of kinetic energies an additional peak corresponding to the capture of helium is observed for fragment ions C50+, C52+, C54+, C56+ and C58+. PMID:21731425

  18. MALDI-TOF/TOF Mass Spectrometric Determination and Antioxidative Activity of Purified Phosphatidylcholine Fractions from Shrimp Species.

    PubMed

    Zhou, Li; Wang, Yan; Wang, Xiaolin; Liang, Yi; Huang, Zheng; Zeng, Xiaoxiong

    2017-02-15

    Purification, characterization, and antioxidative activity in vitro of shrimp phosphatidylcholines (PCs) were investigated. The molecular structures of shrimp PCs were determined by MALDI-TOF/TOF MS. The MS(2) fragments produced from protonated PC precursors and sodiated PC precursors were identified. The specific fragments including [M + Na - trimethylamine](+), [M + Na - 205](+), [M + Na - RCOOH - trimethylamine](+), and [M + H - RCOOH - trimethylamine](+) could distinguish the precursor type to confirm PC molecular structures. The antioxidative activities of purified shrimp PC fractions were evaluated by assay of DPPH free radical scavenging activity, and their effects on the oxidative stability of camellia oil were measured by monitoring changes in the peroxide value assay during oxidation. The PC fractions from Penaeus chinesis and Macrobranchium nipponense showed stronger antioxidative activities than those of other species. All of the shrimp PCs at 0.2% (w/w) improved the oxidative stability of camellia oil significantly (P < 0.05) compared to controls. The experimental findings suggest that shrimp PCs might be a valuable source of natural antioxidants for edible oils or other food dispersions.

  19. Optimization of Plasma Sample Pretreatment for Quantitative Analysis Using iTRAQ Labeling and LC-MALDI-TOF/TOF

    PubMed Central

    Luczak, Magdalena; Marczak, Lukasz; Stobiecki, Maciej

    2014-01-01

    Shotgun proteomic methods involving iTRAQ (isobaric tags for relative and absolute quantitation) peptide labeling facilitate quantitative analyses of proteomes and searches for useful biomarkers. However, the plasma proteome's complexity and the highly dynamic plasma protein concentration range limit the ability of conventional approaches to analyze and identify a large number of proteins, including useful biomarkers. The goal of this paper is to elucidate the best approach for plasma sample pretreatment for MS- and iTRAQ-based analyses. Here, we systematically compared four approaches, which include centrifugal ultrafiltration, SCX chromatography with fractionation, affinity depletion, and plasma without fractionation, to reduce plasma sample complexity. We generated an optimized protocol for quantitative protein analysis using iTRAQ reagents and an UltrafleXtreme (Bruker Daltonics) MALDI TOF/TOF mass spectrometer. Moreover, we used a simple, rapid, efficient, but inexpensive sample pretreatment technique that generated an optimal opportunity for biomarker discovery. We discuss the results from the four sample pretreatment approaches and conclude that SCX chromatography without affinity depletion is the best plasma sample preparation pretreatment method for proteome analysis. Using this technique, we identified 1,780 unique proteins, including 1,427 that were quantified by iTRAQ with high reproducibility and accuracy. PMID:24988083

  20. Rapid typing of Mannheimia haemolytica major genotypes 1 and 2 using MALDI-TOF mass spectrometry.

    PubMed

    Loy, John Dustin; Clawson, Michael L

    2017-05-01

    Genotype 2M. haemolytica predominantly associate over genotype 1 with the lungs of cattle with respiratory disease and ICEs containing antimicrobial resistance genes. Distinct protein masses were detected by MALDI-TOF MS between genotype 1 and 2 strains. MALDI-TOF MS could rapidly differentiate genotype 2 strains in veterinary diagnostic laboratories.

  1. Rapid typing of Mannheimia haemolytica major genotypes 1 and 2 using MALDI-TOF mass spectrometry

    USDA-ARS?s Scientific Manuscript database

    Genotype 2 M. haemolytica predominantly associate over genotype 1 with the lungs of cattle with respiratory disease and ICEs containing antimicrobial resistance genes. Distinct protein masses were detected by MALDI-TOF MS between genotype 1 and 2 strains. MALDI-TOF MS could rapidly differentiate ge...

  2. TOF-SIMS Analysis of Red Color Inks of Writing and Printing Tools on Questioned Documents.

    PubMed

    Lee, Jihye; Nam, Yun Sik; Min, Jisook; Lee, Kang-Bong; Lee, Yeonhee

    2016-05-01

    Time-of-flight secondary ion mass spectrometry (TOF-SIMS) is a well-established surface technique that provides both elemental and molecular information from several monolayers of a sample surface while also allowing depth profiling or image mapping to be performed. Static TOF-SIMS with improved performances has expanded the application of TOF-SIMS to the study of a variety of organic, polymeric, biological, archaeological, and forensic materials. In forensic investigation, the use of a minimal sample for the analysis is preferable. Although the TOF-SIMS technique is destructive, the probing beams have microsized diameters so that only small portion of the questioned sample is necessary for the analysis, leaving the rest available for other analyses. In this study, TOF-SIMS and attenuated total reflectance Fourier transform infrared (ATR-FTIR) were applied to the analysis of several different pen inks, red sealing inks, and printed patterns on paper. The overlapping areas of ballpoint pen writing, red seal stamping, and laser printing in a document were investigated to identify the sequence of recording. The sequence relations for various cases were determined from the TOF-SIMS mapping image and the depth profile. TOF-SIMS images were also used to investigate numbers or characters altered with two different red pens. TOF-SIMS was successfully used to determine the sequence of intersecting lines and the forged numbers on the paper.

  3. MALDI-TOF MS of Trichoderma: A model system for the identification of microfungi

    USDA-ARS?s Scientific Manuscript database

    This investigation aimed to assess whether MALDI-TOF MS analysis of proteomics could be applied to the study of Trichoderma, a fungal genus selected because it includes many species and is phylogenetically well defined. We also investigated whether MALDI-TOF MS analysis of proteomics would reveal ap...

  4. National Ignition Facility (NIF) Neutron time-of-flight (nTOF) Measurements

    SciTech Connect

    Lerche, R A; Glebov, V Y; Moran, M J; McNaney, J M; Kilkenny, J D; Eckart, M; Zacharias, R A; Haslam, J J; Clancy, T J; Yeoman, M F; Warwas, D P; Sangster, T C; Stoeckl, C; Knauer, J; Horsfield, C J

    2010-05-13

    The first three of eighteen neutron time-of-flight (nTOF) channels have been installed at the National Ignition Facility (NIF). The role of these detectors includes yield, temperature, and bang time measurements. This article focuses on nTOF data analysis and quality of results obtained for the first set of experiments to use all 192 NIF beams. Targets produced up to 2 x 10{sup 10} 2.45-MeV neutrons for initial testing of the nTOF detectors. Differences in neutron scattering at the OMEGA laser facility where the detectors were calibrated and at NIF result in different response functions at the two facilities. Monte Carlo modeling shows this difference. The nTOF performance on these early experiments indicates the nTOF system with its full complement of detectors should perform well in future measurements of yield, temperature, and bang time.

  5. Dynamically orthogonal field equations for stochastic flows and particle dynamics

    DTIC Science & Technology

    2011-02-01

    of the considered phenomenon. I am also grateful to the members of my thesis committee, Dennis McLaughlin, Nicholas Patrikalakis, and Carl Wunsch for...fields implies orthogonality of their spatial Fourier, Gabor , and Wavelet transforms [5], [35]. Therefore, different DO modes always contain different

  6. Orthogonal Projection in Teaching Regression and Financial Mathematics

    ERIC Educational Resources Information Center

    Kachapova, Farida; Kachapov, Ilias

    2010-01-01

    Two improvements in teaching linear regression are suggested. The first is to include the population regression model at the beginning of the topic. The second is to use a geometric approach: to interpret the regression estimate as an orthogonal projection and the estimation error as the distance (which is minimized by the projection). Linear…

  7. Wave Propagation in Isotropic Media with Two Orthogonal Fracture Sets

    NASA Astrophysics Data System (ADS)

    Shao, S.; Pyrak-Nolte, L. J.

    2016-10-01

    Orthogonal intersecting fracture sets form fracture networks that affect the hydraulic and mechanical integrity of a rock mass. Interpretation of elastic waves propagated through orthogonal fracture networks is complicated by guided modes that propagate along and between fractures, by multiple internal reflections, as well as by scattering from fracture intersections. The existence of some or all of these potentially overlapping modes depends on local stress fields that can preferentially close or open either one or both sets of fractures. In this study, an acoustic wave front imaging system was used to examine the effect of bi-axial loading conditions on acoustic wave propagation in isotropic media containing two orthogonal fracture sets. From the experimental data, orthogonal intersecting fracture sets support guided waves that depend on fracture spacing and fracture-specific stiffnesses. In addition, fracture intersections have stronger effects on propagating wave fronts than merely the superposition of the effects of two independent fractures because of energy partitioning among transmitted/reflected waves, scattered waves and guided modes. Interpretation of the properties of fractures or fracture sets from seismic measurements must consider non-uniform fracture stiffnesses within and among fracture sets, as well as considering the striking effects of fracture intersections on wave propagation.

  8. Orthogonal Projection in Teaching Regression and Financial Mathematics

    ERIC Educational Resources Information Center

    Kachapova, Farida; Kachapov, Ilias

    2010-01-01

    Two improvements in teaching linear regression are suggested. The first is to include the population regression model at the beginning of the topic. The second is to use a geometric approach: to interpret the regression estimate as an orthogonal projection and the estimation error as the distance (which is minimized by the projection). Linear…

  9. Trusted materials using orthogonal testing. 2015 Annual report

    SciTech Connect

    Van Benthem, Mark

    2015-09-01

    The purpose of this project is to prove (or disprove) that a reasonable number of simple tests can be used to provide a unique data signature for materials, changes in which could serve as a harbinger of material deviation, prompting further evaluations. The routine tests are mutually orthogonal to any currently required materials specification tests.

  10. A four-component organogel based on orthogonal chemical interactions.

    PubMed

    Luisier, Nicolas; Schenk, Kurt; Severin, Kay

    2014-09-14

    A thermoresponsive organogel was obtained by orthogonal assembly of four compounds using dynamic covalent boronate ester and imine bonds, as well as dative boron-nitrogen bonds. It is shown that the gel state can be disrupted or reinforced by chemicals which undergo exchange reactions with the gel components.

  11. Orthogonality criterion for banishing hydrino states from standard quantum mechanics

    NASA Astrophysics Data System (ADS)

    de Castro, Antonio S.

    2007-10-01

    Orthogonality criterion is used to shown in a very simple and general way that anomalous bound-state solutions for the Coulomb potential (hydrino states) do not exist as bona fide solutions of the Schr\\"{o}dinger, Klein-Gordon and Dirac equations.

  12. Deep learning classifier based on NPCA and orthogonal feature selection

    NASA Astrophysics Data System (ADS)

    Jankowski, Stanisław; Szymański, Zbigniew; Dziomin, Uladzimir; Golovko, Vladimir; Barcz, Aleksy

    2016-09-01

    In this paper the idea of deep learning classifier is developed. The effectiveness of discriminative classifier, as e.g. multilayer perceptron, support vector machine can be improved by adding the data preprocessing blocks: orthogonal feature selection (Gram-Schmidt method) and nonlinear principal component analysis. We present the case study of various structures of deep learning systems (scenarios).

  13. Digital orthogonal receiver for wideband radar based on compressed sensing

    NASA Astrophysics Data System (ADS)

    Hou, Qingkai; Liu, Yang; Chen, Zengping; Su, Shaoying

    2014-10-01

    Digital orthogonal receiver is one of the key techniques in digital receiver of soft radar, and compressed sensing is attracting more and more attention in radar signal processing. In this paper, we propose a CS digital orthogonal receiver for wideband radar which utilizes compressed sampling in the acquisition of radar raw data. In order to reconstruct complex signal from sub-sampled raw data, a novel sparse dictionary is proposed to represent the real-valued radar raw signal sparsely. Using our dictionary and CS algorithm, we can reconstruct the complex-valued radar signal from sub-sampled echoes. Compared with conventional digital orthogonal radar receiver, the architecture of receiver in this paper is more simplified and the sampling frequency of ADC is reduced sharply. At the same time, the range profile can be obtained during the reconstruction, so the matched filtering can be eliminated in the receiver. Some experiments on ISAR imaging based on simulated data prove that the phase information of radar echoes is well reserved in our orthogonal receiver and the whole design is effective for wideband radar.

  14. Application of orthogonal eigenstructure control to flight control design

    NASA Astrophysics Data System (ADS)

    Rastgaar Aagaah, M. A.; Ahmadian, M.; Southward, S. C.

    2008-03-01

    Orthogonal eigenstructure control is used for designing a control law that decouples the dynamic modes of a flying vehicle. Orthogonal eigenstructure control is a feedback control method for linear time invariant multi-input multi-output systems. This method has been recently developed by authors. The advantage of this control method over eigenstructure assignment methods is that there is no need for defining the closed-loop poles or shaping the closed-loop eigenvectors. This method eliminates the error due to the difference between achievable and desirable eigenvectors, by finding vectors orthogonal to the open-loop eigenvectors within the achievable eigenvectors set and replacing the open-loop eigenvectors with them. This method is also applicable to the systems with non-collocated actuators and sensors. Application of this method for designing a flight control law for the lateral directional dynamics of an F-18 HARV is presented, and compared to the results of an eigenstructure assignment method. In this case study, the actuators and sensors are not collocated. It is shown that the application of the orthogonal eigenstructure control results in a more significant dynamic modes decoupling in comparison to the application of the eigenstructure assignment technique.

  15. Response Surface Model Building Using Orthogonal Arrays for Computer Experiments

    NASA Technical Reports Server (NTRS)

    Unal, Resit; Braun, Robert D.; Moore, Arlene A.; Lepsch, Roger A.

    1997-01-01

    This study investigates response surface methods for computer experiments and discusses some of the approaches available. Orthogonal arrays constructed for computer experiments are studied and an example application to a technology selection and optimization study for a reusable launch vehicle is presented.

  16. A tunable diode laser emitting orthogonally polarised radiation modes

    SciTech Connect

    Fadyushin, A B; Velichansky, Vladimir L; Senkov, N V; Lukin, M D; Scully, M O; Fleischauer, M

    2002-07-31

    A new scheme of the external cavity of a diode laser is described. The scheme provides emission of two closely spaced ({Delta}{lambda} < 10{sup -3} nm) orthogonally polarised modes, which can be tuned within the gain line, with the mode interval continuously changed. (lasers)

  17. Crossover ensembles of random matrices and skew-orthogonal polynomials

    SciTech Connect

    Kumar, Santosh; Pandey, Akhilesh

    2011-08-15

    Highlights: > We study crossover ensembles of Jacobi family of random matrices. > We consider correlations for orthogonal-unitary and symplectic-unitary crossovers. > We use the method of skew-orthogonal polynomials and quaternion determinants. > We prove universality of spectral correlations in crossover ensembles. > We discuss applications to quantum conductance and communication theory problems. - Abstract: In a recent paper (S. Kumar, A. Pandey, Phys. Rev. E, 79, 2009, p. 026211) we considered Jacobi family (including Laguerre and Gaussian cases) of random matrix ensembles and reported exact solutions of crossover problems involving time-reversal symmetry breaking. In the present paper we give details of the work. We start with Dyson's Brownian motion description of random matrix ensembles and obtain universal hierarchic relations among the unfolded correlation functions. For arbitrary dimensions we derive the joint probability density (jpd) of eigenvalues for all transitions leading to unitary ensembles as equilibrium ensembles. We focus on the orthogonal-unitary and symplectic-unitary crossovers and give generic expressions for jpd of eigenvalues, two-point kernels and n-level correlation functions. This involves generalization of the theory of skew-orthogonal polynomials to crossover ensembles. We also consider crossovers in the circular ensembles to show the generality of our method. In the large dimensionality limit, correlations in spectra with arbitrary initial density are shown to be universal when expressed in terms of a rescaled symmetry breaking parameter. Applications of our crossover results to communication theory and quantum conductance problems are also briefly discussed.

  18. Velocity field calculation for non-orthogonal numerical grids

    SciTech Connect

    Flach, G. P.

    2015-03-01

    Computational grids containing cell faces that do not align with an orthogonal (e.g. Cartesian, cylindrical) coordinate system are routinely encountered in porous-medium numerical simulations. Such grids are referred to in this study as non-orthogonal grids because some cell faces are not orthogonal to a coordinate system plane (e.g. xy, yz or xz plane in Cartesian coordinates). Non-orthogonal grids are routinely encountered at the Savannah River Site in porous-medium flow simulations for Performance Assessments and groundwater flow modeling. Examples include grid lines that conform to the sloping roof of a waste tank or disposal unit in a 2D Performance Assessment simulation, and grid surfaces that conform to undulating stratigraphic surfaces in a 3D groundwater flow model. Particle tracking is routinely performed after a porous-medium numerical flow simulation to better understand the dynamics of the flow field and/or as an approximate indication of the trajectory and timing of advective solute transport. Particle tracks are computed by integrating the velocity field from cell to cell starting from designated seed (starting) positions. An accurate velocity field is required to attain accurate particle tracks. However, many numerical simulation codes report only the volumetric flowrate (e.g. PORFLOW) and/or flux (flowrate divided by area) crossing cell faces. For an orthogonal grid, the normal flux at a cell face is a component of the Darcy velocity vector in the coordinate system, and the pore velocity for particle tracking is attained by dividing by water content. For a non-orthogonal grid, the flux normal to a cell face that lies outside a coordinate plane is not a true component of velocity with respect to the coordinate system. Nonetheless, normal fluxes are often taken as Darcy velocity components, either naively or with accepted approximation. To enable accurate particle tracking or otherwise present an accurate depiction of the velocity field for a non-orthogonal

  19. Effect of process parameters on cavity pressure in injection molding

    NASA Astrophysics Data System (ADS)

    Wang, Quan; Zhen, Mengxiang; Wu, Zhenghuan; Cai, Yujun

    2017-03-01

    In this study, an experimental work is performed on the effect of injection molding parameters on the polymer pressure inside the mold cavity. Different process parameters of the injection molding are considered during the experimental work (packing pressure, packing time, injection pressure, mold temperature, and melt temperature). A set analyses are carried out by combining the process parameters based on the L16(45)Taguchi orthogonal design. The cavity pressure is measured with time by using Kistler pressure sensor at different injection molding cycles. The results show the packing pressure is significant factor of affecting the maximum of diverse spline cavity pressure. The results obtained specify well the developing of the cavity pressure inside the mold cavity during the injection molding cycles.

  20. Applications of a matrix-assisted laser desorption/ionization orthogonal time-of-flight mass spectrometer. l. Metastable decay and collision-induced dissociation for sequencing peptides.

    PubMed

    Ackloo, Suzanne; Loboda, Alexandre

    2005-01-01

    The use of a high-performance orthogonal time-of-flight (o-TOF) mass spectrometer for sequence analysis is described. The mass spectrometer is equipped with a matrix-assisted laser desorption/ionization (MALDI) source that operates at elevated pressure, 0.01-1 Torr. Ion fragmentation is controlled by varying the pressure of the buffer gas, the laser energy, the voltage difference between the MALDI target and the adjacent sampling cone, and between the cone and the quadrupole ion guide. The peptides were analyzed under optimal ionization conditions to obtain their molecular mass, and under conditions that promote ion dissociation via metastable decomposition or collision-induced dissociation (CID). The fragmentation spectra were used to obtain sequence information. Ion dissociation was promoted via three configurations of the ionization parameters. All methods yielded sequencing-grade b- and y-type ions. Two binary mixtures of peptides were used to demonstrate that: (1) external calibration provides a standard deviation (sigma) of 4 ppm with a mode of 9 ppm; and (2) that peptides with molecular masses that differ by a factor of two may be independently fragmented by appropriately choosing the CID energy and the low-mass cut-off. Analyses of tryptic digests employed liquid chromatography (LC), deposition of the eluant on a target, and finally MALDI-TOF mass spectrometry. The mass fingerprint and the (partial) sequence of the tryptic peptides were matched to their precursor protein via database searches.

  1. Multielement analysis of interplanetary dust particles using TOF-SIMS

    NASA Technical Reports Server (NTRS)

    Stephan, T.; Kloeck, W.; Jessberger, E. K.; Rulle, H.; Zehnpfenning, J.

    1993-01-01

    Sections of three stratospheric particles (U2015G1, W7029*A27, and L2005P9) were analyzed with TOF-SIMS (Time Of Flight-Secondary Ion Mass Spectrometry) continuing our efforts to investigate the element distribution in interplanetary dust particles (IDP's) with high lateral resolution (approximately 0.2 micron), to examine possible atmospheric contamination effects, and to further explore the abilities of this technique for element analysis of small samples. The samples, previously investigated with SXRF (synchrotron X-ray fluorescence analysis), are highly enriched in Br (Br/Fe: 59 x CI, 9.2 x CI, and 116 x CI, respectively). U2015G1 is the IDP with the by far highest Zn/Fe-ratio (81 x CI) ever reported in chondritic particles.

  2. A MRPC prototype for SOLID-TOF in Jlab

    SciTech Connect

    Wang, Y; Wang, J; Gonzalez-Diaz, D; Chen, H; Chen, J; Li, Y; Camsonne, A; Chen, J -P; Gao, H; Meziane, M

    2013-03-01

    A prototype of Multi-gap Resistive Plate Chamber (MRPC) for the future SoLID time of flight system at JLab has been developed. The counter, trapezoidal in shape, is assembled with the newly developed low-resistive Chinese glass. It has 10 × 0.25 mm gas gaps and 11 readout strips of different lengths. The strip width is 2.5 cm with a strip-to-strip interval of 3 mm. Preliminary tests performed with cosmic-rays showed an efficiency higher than 95% and a time resolution around 50 ps. Results under diffuse/uniform irradiation performed at JLab with scattered high energy electrons showed a time resolution of 70–80 ps and over-95% efficiency up to an incoming flux of 15 kHz/cm{sup 2}. These performances meet the requirements of the new time of flight system SoLID-TOF.

  3. Chemical bonding: the orthogonal valence-bond view.

    PubMed

    Sax, Alexander F

    2015-04-21

    Chemical bonding is the stabilization of a molecular system by charge- and spin-reorganization processes in chemical reactions. These processes are said to be local, because the number of atoms involved is very small. With multi-configurational self-consistent field (MCSCF) wave functions, these processes can be calculated, but the local information is hidden by the delocalized molecular orbitals (MO) used to construct the wave functions. The transformation of such wave functions into valence bond (VB) wave functions, which are based on localized orbitals, reveals the hidden information; this transformation is called a VB reading of MCSCF wave functions. The two-electron VB wave functions describing the Lewis electron pair that connects two atoms are frequently called covalent or neutral, suggesting that these wave functions describe an electronic situation where two electrons are never located at the same atom; such electronic situations and the wave functions describing them are called ionic. When the distance between two atoms decreases, however, every covalent VB wave function composed of non-orthogonal atomic orbitals changes its character from neutral to ionic. However, this change in the character of conventional VB wave functions is hidden by its mathematical form. Orthogonal VB wave functions composed of orthonormalized orbitals never change their character. When localized fragment orbitals are used instead of atomic orbitals, one can decide which local information is revealed and which remains hidden. In this paper, we analyze four chemical reactions by transforming the MCSCF wave functions into orthogonal VB wave functions; we show how the reactions are influenced by changing the atoms involved or by changing their local symmetry. Using orthogonal instead of non-orthogonal orbitals is not just a technical issue; it also changes the interpretation, revealing the properties of wave functions that remain otherwise undetected.

  4. Chemical Bonding: The Orthogonal Valence-Bond View

    PubMed Central

    Sax, Alexander F.

    2015-01-01

    Chemical bonding is the stabilization of a molecular system by charge- and spin-reorganization processes in chemical reactions. These processes are said to be local, because the number of atoms involved is very small. With multi-configurational self-consistent field (MCSCF) wave functions, these processes can be calculated, but the local information is hidden by the delocalized molecular orbitals (MO) used to construct the wave functions. The transformation of such wave functions into valence bond (VB) wave functions, which are based on localized orbitals, reveals the hidden information; this transformation is called a VB reading of MCSCF wave functions. The two-electron VB wave functions describing the Lewis electron pair that connects two atoms are frequently called covalent or neutral, suggesting that these wave functions describe an electronic situation where two electrons are never located at the same atom; such electronic situations and the wave functions describing them are called ionic. When the distance between two atoms decreases, however, every covalent VB wave function composed of non-orthogonal atomic orbitals changes its character from neutral to ionic. However, this change in the character of conventional VB wave functions is hidden by its mathematical form. Orthogonal VB wave functions composed of orthonormalized orbitals never change their character. When localized fragment orbitals are used instead of atomic orbitals, one can decide which local information is revealed and which remains hidden. In this paper, we analyze four chemical reactions by transforming the MCSCF wave functions into orthogonal VB wave functions; we show how the reactions are influenced by changing the atoms involved or by changing their local symmetry. Using orthogonal instead of non-orthogonal orbitals is not just a technical issue; it also changes the interpretation, revealing the properties of wave functions that remain otherwise undetected. PMID:25906476

  5. Microorganism Identification Based On MALDI-TOF-MS Fingerprints

    NASA Astrophysics Data System (ADS)

    Elssner, Thomas; Kostrzewa, Markus; Maier, Thomas; Kruppa, Gary

    Advances in MALDI-TOF mass spectrometry have enabled the ­development of a rapid, accurate and specific method for the identification of bacteria directly from colonies picked from culture plates, which we have named the MALDI Biotyper. The picked colonies are placed on a target plate, a drop of matrix solution is added, and a pattern of protein molecular weights and intensities, "the protein fingerprint" of the bacteria, is produced by the MALDI-TOF mass spectrometer. The obtained protein mass fingerprint representing a molecular signature of the microorganism is then matched against a database containing a library of previously measured protein mass fingerprints, and scores for the match to every library entry are produced. An ID is obtained if a score is returned over a pre-set threshold. The sensitivity of the techniques is such that only approximately 104 bacterial cells are needed, meaning that an overnight culture is sufficient, and the results are obtained in minutes after culture. The improvement in time to result over biochemical methods, and the capability to perform a non-targeted identification of bacteria and spores, potentially makes this method suitable for use in the detect-to-treat timeframe in a bioterrorism event. In the case of white-powder samples, the infectious spore is present in sufficient quantity in the powder so that the MALDI Biotyper result can be obtained directly from the white powder, without the need for culture. While spores produce very different patterns from the vegetative colonies of the corresponding bacteria, this problem is overcome by simply including protein fingerprints of the spores in the library. Results on spores can be returned within minutes, making the method suitable for use in the "detect-to-protect" timeframe.

  6. Optical design through optimization for rectangular apertures using freeform orthogonal polynomials: a case study

    NASA Astrophysics Data System (ADS)

    Nikolic, Milena; Benítez, Pablo; Narasimhan, Bharathwaj; Grabovickic, Dejan; Liu, Jayao; Miñano, Juan C.

    2016-07-01

    Several applications of freeform optics call for deeper analysis of systems with rectangular apertures. We study the behavior of a freeform mirror system by comparing four orthogonal polynomial surface representations through local optimization. We compare polynomials with different orthogonal areas (rectangular-circular) and different metrics (sag-gradient). Polynomials orthogonal inside a rectangle converge faster or to a better local minimum than those orthogonal inside a circle in the example considered. This is the most likely due to the loss of the good properties of orthogonality when the orthogonality area does not coincide with the surface area used.

  7. Darbepoetin Alfa Injection

    MedlinePlus

    ... to inject it.Darbepoetin alfa injection comes in prefilled syringes and in vials to be used with disposable ... solution before injecting it. Be sure that the prefilled syringe or vial is labeled with the correct name ...

  8. Absolute Quantification of Rifampicin by MALDI Imaging Mass Spectrometry Using Multiple TOF/TOF Events in a Single Laser Shot

    NASA Astrophysics Data System (ADS)

    Prentice, Boone M.; Chumbley, Chad W.; Caprioli, Richard M.

    2017-01-01

    Matrix-assisted laser desorption/ionization imaging mass spectrometry (MALDI IMS) allows for the visualization of molecular distributions within tissue sections. While providing excellent molecular specificity and spatial information, absolute quantification by MALDI IMS remains challenging. Especially in the low molecular weight region of the spectrum, analysis is complicated by matrix interferences and ionization suppression. Though tandem mass spectrometry (MS/MS) can be used to ensure chemical specificity and improve sensitivity by eliminating chemical noise, typical MALDI MS/MS modalities only scan for a single MS/MS event per laser shot. Herein, we describe TOF/TOF instrumentation that enables multiple fragmentation events to be performed in a single laser shot, allowing the intensity of the analyte to be referenced to the intensity of the internal standard in each laser shot while maintaining the benefits of MS/MS. This approach is illustrated by the quantitative analyses of rifampicin (RIF), an antibiotic used to treat tuberculosis, in pooled human plasma using rifapentine (RPT) as an internal standard. The results show greater than 4-fold improvements in relative standard deviation as well as improved coefficients of determination (R2) and accuracy (>93% quality controls, <9% relative errors). This technology is used as an imaging modality to measure absolute RIF concentrations in liver tissue from an animal dosed in vivo. Each microspot in the quantitative image measures the local RIF concentration in the tissue section, providing absolute pixel-to-pixel quantification from different tissue microenvironments. The average concentration determined by IMS is in agreement with the concentration determined by HPLC-MS/MS, showing a percent difference of 10.6%.

  9. Absolute Quantification of Rifampicin by MALDI Imaging Mass Spectrometry Using Multiple TOF/TOF Events in a Single Laser Shot.

    PubMed

    Prentice, Boone M; Chumbley, Chad W; Caprioli, Richard M

    2017-01-01

    Matrix-assisted laser desorption/ionization imaging mass spectrometry (MALDI IMS) allows for the visualization of molecular distributions within tissue sections. While providing excellent molecular specificity and spatial information, absolute quantification by MALDI IMS remains challenging. Especially in the low molecular weight region of the spectrum, analysis is complicated by matrix interferences and ionization suppression. Though tandem mass spectrometry (MS/MS) can be used to ensure chemical specificity and improve sensitivity by eliminating chemical noise, typical MALDI MS/MS modalities only scan for a single MS/MS event per laser shot. Herein, we describe TOF/TOF instrumentation that enables multiple fragmentation events to be performed in a single laser shot, allowing the intensity of the analyte to be referenced to the intensity of the internal standard in each laser shot while maintaining the benefits of MS/MS. This approach is illustrated by the quantitative analyses of rifampicin (RIF), an antibiotic used to treat tuberculosis, in pooled human plasma using rifapentine (RPT) as an internal standard. The results show greater than 4-fold improvements in relative standard deviation as well as improved coefficients of determination (R(2)) and accuracy (>93% quality controls, <9% relative errors). This technology is used as an imaging modality to measure absolute RIF concentrations in liver tissue from an animal dosed in vivo. Each microspot in the quantitative image measures the local RIF concentration in the tissue section, providing absolute pixel-to-pixel quantification from different tissue microenvironments. The average concentration determined by IMS is in agreement with the concentration determined by HPLC-MS/MS, showing a percent difference of 10.6%. Graphical Abstract ᅟ.

  10. Investigating the microstructure of keratin extracted from wool: Peptide sequence (MALDI-TOF/TOF) and protein conformation (FTIR)

    NASA Astrophysics Data System (ADS)

    Cardamone, Jeanette M.

    2010-04-01

    Investigations of keratins extracted from wool by reduction hydrolysis and by alkaline hydrolysis showed that their chemical compositions and secondary structures were similar to original wool. The keratin isolates were similar in amino acid, Amides I and II, and secondary structure to each other and to original wool. From SDS-PAGE electrophoresis, keratin isolated by reduction contained protein homologs of molecular weight, ˜40-60 kDa and keratin isolate from alkaline hydrolysis contained peptide fragments of ˜6-8 kDa. MALDI-TOF/TOF spectrometry confirmed that the reduction isolate contained Type II microfibrillar component 7C, hair Type II intermediate filament, Type I microfibrillar 48 kDa component 8C-1, and Type I microfibrillar 47.6 kDa protein homologs which contained alanine, glutamine, glutamic acid, leucine, serine, leucine, and cystine with highest amounts glutamic acid and leucine amino acids. FTIR spectroscopy was applied to examine secondary structure to confirm the content of α-helix/β-sheet/disordered regions for original wool (58.2%/37.9%/3.9%); keratin from reduction (36.7%/50.2%/13.1%); and keratin from alkaline hydrolysis (25.7%/51.8%/22.5%). The higher content of β-sheet secondary structure and intact α-helical conformation characterized these isolates as viable starting materials for chemical modification to form novel bio-based materials useful in industrial formulations and compositions. In particular keratin extracted by reduction with the molecular weight of original wool and the probability of useful mechanical properties can be transformed into stand-alone products of various shapes and forms such as porous foams, sponges, mats, and films for bio-based, adaptable structures.

  11. Multiplex detection of protein toxins using MALDI-TOF-TOF tandem mass spectrometry: application in unambiguous toxin detection from bioaerosol.

    PubMed

    Alam, Syed Imteyaz; Kumar, Bhoj; Kamboj, Dev Vrat

    2012-12-04

    Protein toxins, such as botulinum neurotoxins (BoNTs), Clostridium perfringens epsilon toxin (ETX), staphylococcal enterotoxin B (SEB), shiga toxin (STX), and plant toxin ricin, are involved in a number of diseases and are considered as potential agents for bioterrorism and warfare. From a bioterrorism and warfare perspective, these agents are likely to cause maximum damage to a civilian or military population through an inhalational route of exposure and aerosol is considered the envisaged mode of delivery. Unambiguous detection of toxin from aerosol is of paramount importance, both for bringing mitigation protocols into operation and for implementation of effective medical countermeasures, in case a "biological cloud" is seen over a population. A multiplex, unambiguous, and qualitative detection of protein toxins is reported here using tandem mass spectrometry with MALDI-TOF-TOF. The methodology involving simple sample processing steps was demonstrated to identify toxins (ETX, Clostridium perfringes phospholipase C, and SEB) from blind spiked samples. The novel directed search approach using a list of unique peptides was used to identify toxins from a complex protein mixture. The bioinformatic analysis of seven protein toxins for elucidation of unique peptides with conservation status across all known sequences provides a high confidence for detecting toxins originating from any geographical location and source organism. Use of tandem MS data with peptide sequence information increases the specificity of the method. A prototype for generation of aerosol using a nebulizer and collection using a cyclone collector was used to provide a proof of concept for unambiguous detection of toxin from aerosol using precursor directed tandem mass spectrometry combined with protein database searching. ETX prototoxin could be detected from aerosol at 0.2 ppb concentration in aerosol.

  12. Identification of Dermatophyte Species after Implementation of the In-House MALDI-TOF MS Database

    PubMed Central

    Calderaro, Adriana; Motta, Federica; Montecchini, Sara; Gorrini, Chiara; Piccolo, Giovanna; Piergianni, Maddalena; Buttrini, Mirko; Medici, Maria Cristina; Arcangeletti, Maria Cristina; Chezzi, Carlo; De Conto, Flora

    2014-01-01

    Despite that matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry (MS) has become a powerful tool in the clinical microbiology setting, few studies have till now focused on MALDI-TOF MS-based identification of dermatophytes. In this study, we analyze dermatophytes strains isolated from clinical samples by MALDI-TOF MS to supplement the reference database available in our laboratory. Twenty four dermatophytes (13 reference strains and 11 field isolated strains), identified by both conventional and molecular standard procedures, were analyzed by MALDI-TOF MS, and the spectra obtained were used to supplement the available database, limited to a few species. To verify the robustness of the implemented database, 64 clinical isolates other than those used for the implementation were identified by MALDI-TOF MS. The implementation allowed the identification of the species not included in the original database, reinforced the identification of the species already present and correctly identified those within the Trichophyton mentagrophytes complex previously classified as Trichophyton. tonsurans by MALDI-TOF MS. The dendrogram obtained by analyzing the proteic profiles of the different species of dermatophytes reflected their taxonomy, showing moreover, in some cases, a different clusterization between the spectra already present in the database and those newly added. In this study, MALDI-TOF MS proved to be a useful tool suitable for the identification of dermatophytes for diagnostic purpose. PMID:25216335

  13. Identification of Dermatophyte species after implementation of the in-house MALDI-TOF MS database.

    PubMed

    Calderaro, Adriana; Motta, Federica; Montecchini, Sara; Gorrini, Chiara; Piccolo, Giovanna; Piergianni, Maddalena; Buttrini, Mirko; Medici, Maria Cristina; Arcangeletti, Maria Cristina; Chezzi, Carlo; De Conto, Flora

    2014-09-11

    Despite that matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry (MS) has become a powerful tool in the clinical microbiology setting, few studies have till now focused on MALDI-TOF MS-based identification of dermatophytes. In this study, we analyze dermatophytes strains isolated from clinical samples by MALDI-TOF MS to supplement the reference database available in our laboratory. Twenty four dermatophytes (13 reference strains and 11 field isolated strains), identified by both conventional and molecular standard procedures, were analyzed by MALDI-TOF MS, and the spectra obtained were used to supplement the available database, limited to a few species. To verify the robustness of the implemented database, 64 clinical isolates other than those used for the implementation were identified by MALDI-TOF MS. The implementation allowed the identification of the species not included in the original database, reinforced the identification of the species already present and correctly identified those within the Trichophyton mentagrophytes complex previously classified as Trichophyton. tonsurans by MALDI-TOF MS. The dendrogram obtained by analyzing the proteic profiles of the different species of dermatophytes reflected their taxonomy, showing moreover, in some cases, a different clusterization between the spectra already present in the database and those newly added. In this study, MALDI-TOF MS proved to be a useful tool suitable for the identification of dermatophytes for diagnostic purpose.

  14. Epidural Injections for Spinal Pain

    MedlinePlus

    ... Physician Resources Professions Site Index A-Z Epidural Injections An epidural injection provides temporary or prolonged relief ... limitations of Epidural Injection? What is an Epidural Injection? An epidural injection is an injection of medication ...

  15. MALDI-TOF alone versus MALDI-TOF combined with real-time antimicrobial stewardship interventions on time to optimal antimicrobial therapy in patients with positive blood cultures.

    PubMed

    Beganovic, Maya; Costello, Michael; Wieczorkiewicz, Sarah M

    2017-02-22

    Introduction: Matrix-assisted laser desorption ionization time of flight (MALDI-TOF) decreases time to organism identification and improves clinical and financial outcomes. The purpose of this study was to evaluate the impact of MALDI-TOF alone vs MALDI-TOF combined with real-time, pharmacist-driven, antimicrobial stewardship (AMS) intervention on patient outcomes.Methods: This single-center, pre-post quasi-experimental study evaluated hospitalized patients with positive blood cultures identified via MALDI-TOF combined with prospective AMS intervention, compared to a control cohort with MALDI-TOF identification without AMS intervention. AMS intervention included: real-time MALDI-TOF pharmacist notification, and prospective AMS provider feedback. The primary outcome was time to optimal antimicrobial therapy (TTOT).Results: A total of 252 blood cultures were included for final analysis: 126 in each group. MALDI-TOF + AMS intervention significantly reduced overall TTOT (75.17 vs 43.06 h, p <0.001), Gram + contaminant TTOT (48.21 vs 11.75 h, p <0.001), Gram - infection (GNI) TTOT (71.83 vs 35.98 h, p <0.001), and reduced overall hospital LOS (15.03 vs 9.02 days, p 0.021). TTOT for Gram + infection (GPI) was improved (64.04 vs 41.61 h, p 0.082). For GPI: reduced hospital LOS (14.64 vs 10.31 days, p 0.002) and length of antimicrobial therapy 24.30 vs 18.97 days, p 0.018). For GNI: reduced time to microbiologic clearance (51.13 vs 34.51 h, p <0.001), hospital LOS (15.40 vs 7.90 days, p 0.027), and ICU LOS (5.55 vs 1.19 days, p 0.035).Conclusion: In order to achieve optimal outcomes, rapid identification with MALDI-TOF combined with real-time AMS interventions is more impactful than MALDI-TOF alone.

  16. TOF Mass Measurements of Very Exotic Nuclides: an Input for Astrophysical Calculations

    NASA Astrophysics Data System (ADS)

    Matoš, M.; Estrade, A.; Amthor, M.; Bazin, D.; Becerril, A.; Elliot, T.; Galaviz, D.; Gade, A.; Lorusso, G.; Montes, F.; Pereira, J.; Portillo, M.; Rogers, A. M.; Schatz, H.; Stolz, A.; Aprahamian, A.; Shapira, D.; Smith, E.; Gupta, S.; Wallace, M.

    2007-10-01

    Atomic masses play a crucial role in many nuclear astrophysics calculations. Very exotic nuclei can be accessed by time-of- flight techniques at radioactive beam facilities. The NSCL facility provides a well-suited infrastructure for TOF mass measurements of very exotic nuclei. At this facility, we have recently implemented a TOF-Bρ technique and performed mass measurements of neutron-rich nuclides in the Fe region, important for calculations of the r-process and processes occurring in the crust of accreting neutron stars. Description of the TOF technique, results and future plans related to nuclear astrophysics will be presented.

  17. Tracking Lung Tumors in Orthogonal X-Rays

    PubMed Central

    2013-01-01

    This paper presents a computationally very efficient, robust, automatic tracking method that does not require any implanted fiducials for low-contrast tumors. First, it generates a set of motion hypotheses and computes corresponding feature vectors in local windows within orthogonal-axis X-ray images. Then, it fits a regression model that maps features to 3D tumor motions by minimizing geodesic distances on motion manifold. These hypotheses can be jointly generated in 3D to learn a single 3D regression model or in 2D through back projection to learn two 2D models separately. Tumor is tracked by applying regression to the consecutive image pairs while selecting optimal window size at every time. Evaluations are performed on orthogonal X-ray videos of 10 patients. Comparative experimental results demonstrate superior accuracy (~1 pixel average error) and robustness to varying imaging artifacts and noise at the same time. PMID:23986789

  18. Entanglement as a resource to distinguish orthogonal product states

    PubMed Central

    Zhang, Zhi-Chao; Gao, Fei; Cao, Tian-Qing; Qin, Su-Juan; Wen, Qiao-Yan

    2016-01-01

    It is known that there are many sets of orthogonal product states which cannot be distinguished perfectly by local operations and classical communication (LOCC). However, these discussions have left the following open question: What entanglement resources are necessary and/or sufficient for this task to be possible with LOCC? In m ⊗ n, certain classes of unextendible product bases (UPB) which can be distinguished perfectly using entanglement as a resource, had been presented in 2008. In this paper, we present protocols which use entanglement more efficiently than teleportation to distinguish some classes of orthogonal product states in m ⊗ n, which are not UPB. For the open question, our results offer rather general insight into why entanglement is useful for such tasks, and present a better understanding of the relationship between entanglement and nonlocality. PMID:27458034

  19. Entanglement as a resource to distinguish orthogonal product states.

    PubMed

    Zhang, Zhi-Chao; Gao, Fei; Cao, Tian-Qing; Qin, Su-Juan; Wen, Qiao-Yan

    2016-07-26

    It is known that there are many sets of orthogonal product states which cannot be distinguished perfectly by local operations and classical communication (LOCC). However, these discussions have left the following open question: What entanglement resources are necessary and/or sufficient for this task to be possible with LOCC? In m ⊗ n, certain classes of unextendible product bases (UPB) which can be distinguished perfectly using entanglement as a resource, had been presented in 2008. In this paper, we present protocols which use entanglement more efficiently than teleportation to distinguish some classes of orthogonal product states in m ⊗ n, which are not UPB. For the open question, our results offer rather general insight into why entanglement is useful for such tasks, and present a better understanding of the relationship between entanglement and nonlocality.

  20. Entanglement as a resource to distinguish orthogonal product states

    NASA Astrophysics Data System (ADS)

    Zhang, Zhi-Chao; Gao, Fei; Cao, Tian-Qing; Qin, Su-Juan; Wen, Qiao-Yan

    2016-07-01

    It is known that there are many sets of orthogonal product states which cannot be distinguished perfectly by local operations and classical communication (LOCC). However, these discussions have left the following open question: What entanglement resources are necessary and/or sufficient for this task to be possible with LOCC? In m ⊗ n, certain classes of unextendible product bases (UPB) which can be distinguished perfectly using entanglement as a resource, had been presented in 2008. In this paper, we present protocols which use entanglement more efficiently than teleportation to distinguish some classes of orthogonal product states in m ⊗ n, which are not UPB. For the open question, our results offer rather general insight into why entanglement is useful for such tasks, and present a better understanding of the relationship between entanglement and nonlocality.

  1. Orthogonally modulated molecular transport junctions for resettable electronic logic gates

    PubMed Central

    Meng, Fanben; Hervault, Yves-Marie; Shao, Qi; Hu, Benhui; Norel, Lucie; Rigaut, Stéphane; Chen, Xiaodong

    2014-01-01

    Individual molecules have been demonstrated to exhibit promising applications as functional components in the fabrication of computing nanocircuits. Based on their advantage in chemical tailorability, many molecular devices with advanced electronic functions have been developed, which can be further modulated by the introduction of external stimuli. Here, orthogonally modulated molecular transport junctions are achieved via chemically fabricated nanogaps functionalized with dithienylethene units bearing organometallic ruthenium fragments. The addressable and stepwise control of molecular isomerization can be repeatedly and reversibly completed with a judicious use of the orthogonal optical and electrochemical stimuli to reach the controllable switching of conductivity between two distinct states. These photo-/electro-cooperative nanodevices can be applied as resettable electronic logic gates for Boolean computing, such as a two-input OR and a three-input AND-OR. The proof-of-concept of such logic gates demonstrates the possibility to develop multifunctional molecular devices by rational chemical design. PMID:24394717

  2. Orthogonally modulated molecular transport junctions for resettable electronic logic gates

    NASA Astrophysics Data System (ADS)

    Meng, Fanben; Hervault, Yves-Marie; Shao, Qi; Hu, Benhui; Norel, Lucie; Rigaut, Stéphane; Chen, Xiaodong

    2014-01-01

    Individual molecules have been demonstrated to exhibit promising applications as functional components in the fabrication of computing nanocircuits. Based on their advantage in chemical tailorability, many molecular devices with advanced electronic functions have been developed, which can be further modulated by the introduction of external stimuli. Here, orthogonally modulated molecular transport junctions are achieved via chemically fabricated nanogaps functionalized with dithienylethene units bearing organometallic ruthenium fragments. The addressable and stepwise control of molecular isomerization can be repeatedly and reversibly completed with a judicious use of the orthogonal optical and electrochemical stimuli to reach the controllable switching of conductivity between two distinct states. These photo-/electro-cooperative nanodevices can be applied as resettable electronic logic gates for Boolean computing, such as a two-input OR and a three-input AND-OR. The proof-of-concept of such logic gates demonstrates the possibility to develop multifunctional molecular devices by rational chemical design.

  3. Design of robust differential microphone arrays with orthogonal polynomials.

    PubMed

    Pan, Chao; Benesty, Jacob; Chen, Jingdong

    2015-08-01

    Differential microphone arrays have the potential to be widely deployed in hands-free communication systems thanks to their frequency-invariant beampatterns, high directivity factors, and small apertures. Traditionally, they are designed and implemented in a multistage way with uniform linear geometries. This paper presents an approach to the design of differential microphone arrays with orthogonal polynomials, more specifically with Jacobi polynomials. It first shows how to express the beampatterns as a function of orthogonal polynomials. Then several differential beamformers are derived and their performance depends on the parameters of the Jacobi polynomials. Simulations show the great flexibility of the proposed method in terms of designing any order differential microphone arrays with different beampatterns and controlling white noise gain.

  4. Guide RNA functional modules direct Cas9 activity and orthogonality.

    PubMed

    Briner, Alexandra E; Donohoue, Paul D; Gomaa, Ahmed A; Selle, Kurt; Slorach, Euan M; Nye, Christopher H; Haurwitz, Rachel E; Beisel, Chase L; May, Andrew P; Barrangou, Rodolphe

    2014-10-23

    The RNA-guided Cas9 endonuclease specifically targets and cleaves DNA in a sequence-dependent manner and has been widely used for programmable genome editing. Cas9 activity is dependent on interactions with guide RNAs, and evolutionarily divergent Cas9 nucleases have been shown to work orthogonally. However, the molecular basis of selective Cas9:guide-RNA interactions is poorly understood. Here, we identify and characterize six conserved modules within native crRNA:tracrRNA duplexes and single guide RNAs (sgRNAs) that direct Cas9 endonuclease activity. We show the bulge and nexus are necessary for DNA cleavage and demonstrate that the nexus and hairpins are instrumental in defining orthogonality between systems. In contrast, the crRNA:tracrRNA complementary region can be modified or partially removed. Collectively, our results establish guide RNA features that drive DNA targeting by Cas9 and open new design and engineering avenues for CRISPR technologies.

  5. CVS Decomposition of 3D Homogeneous Turbulence Using Orthogonal Wavelets

    NASA Technical Reports Server (NTRS)

    Farge, Marie; Schneider, Kai; Pellegrino, Giulio; Wray, A. A.; Rogallo, R. S.

    2000-01-01

    This paper compares the filtering used in Coherent Vortex Simulation (CVS) decomposition with an orthogonal wavelet basis, with the Proper Orthogonal Decomposition (POD) or Fourier filtering. Both methods are applied to a field of Direct Numerical Simulation (DNS) data of 3D forced homogeneous isotropic turbulence at microscale Reynolds number R(sub lambda) = 168. We show that, with only 3%N retained modes, CVS filtering separates the coherent vortex tubes from the incoherent background flow. The latter is structureless, has an equipartition energy spectrum, and has a Gaussian velocity probability distribution function (PDF) and an exponential vorticity PDF. On the other hand, the Fourier basis does not extract the coherent vortex tubes cleanly and leaves organized structures in the residual high wavenumber modes whose PDFs are stretched exponentials for both the velocity and the vorticity.

  6. Force Modelling in Orthogonal Cutting Considering Flank Wear Effect

    NASA Astrophysics Data System (ADS)

    Rathod, Kanti Bhikhubhai; Lalwani, Devdas I.

    2017-05-01

    In the present work, an attempt has been made to provide a predictive cutting force model during orthogonal cutting by combining two different force models, that is, a force model for a perfectly sharp tool plus considering the effect of edge radius and a force model for a worn tool. The first force model is for a perfectly sharp tool that is based on Oxley's predictive machining theory for orthogonal cutting as the Oxley's model is for perfectly sharp tool, the effect of cutting edge radius (hone radius) is added and improve model is presented. The second force model is based on worn tool (flank wear) that was proposed by Waldorf. Further, the developed combined force model is also used to predict flank wear width using inverse approach. The performance of the developed combined total force model is compared with the previously published results for AISI 1045 and AISI 4142 materials and found reasonably good agreement.

  7. Modular inflation and the orthogonal axion as the curvaton

    SciTech Connect

    Dimopoulos, K.; Lazarides, G.

    2006-01-15

    We study a particular supersymmetric realization of the Peccei-Quinn symmetry which provides a suitable candidate for the curvaton field. The class of models considered also solves the {mu} problem, while generating the Peccei-Quinn scale dynamically. The curvaton candidate is a pseudo-Nambu-Goldstone boson corresponding to an angular degree of freedom orthogonal to the axion field. Its order parameter increases substantially following a phase transition during inflation. This results in a drastic amplification of the curvaton perturbations. Consequently, the mechanism is able to accommodate low-scale inflation with Hubble parameter at the TeV scale. Hence, we investigate modular inflation using a string axion field as the inflaton with inflation scale determined by gravity mediated soft supersymmetry breaking. We find that modular inflation with the orthogonal axion as curvaton can indeed account for the observations for natural values of the parameters.

  8. Ultrahigh-speed "orthogonal" TDM transmission with an optical Nyquist pulse train.

    PubMed

    Nakazawa, Masataka; Hirooka, Toshihiko; Ruan, Peng; Guan, Pengyu

    2012-01-16

    We propose a novel "orthogonal" TDM transmission scheme using an optical Nyquist pulse that enables us to achieve an ultrahigh data rate and spectral efficiency simultaneously without any intersymbol interference (ISI). We analytically describe the principle of orthogonal TDM, and demonstrate a 160 Gbaud optical orthogonal TDM transmission using 40 GHz optical Nyquist pulses. Tolerance to GVD and the dispersion slope is significantly improved by virtue of the orthogonality, reduced bandwidth, and minimum ISI.

  9. Charge transport and injection in amorphous organic electronic materials

    NASA Astrophysics Data System (ADS)

    Tse, Shing Chi

    This thesis presents how we use various measuring techniques to study the charge transport and injection in organic electronic materials. Understanding charge transport and injection properties in organic solids is of vital importance for improving performance characteristics of organic electronic devices, including organic-light-emitting diodes (OLEDs), photovoltaic cells (OPVs), and field effect transistors (OFETs). The charge transport properties of amorphous organic materials, commonly used in organic electronic devices, are investigated by the means of carrier mobility measurements. Transient electroluminescence (EL) technique was used to evaluate the electron mobility of an electron transporting material--- tris(8-hydroxyquinoline) aluminum (Alq3). The results are in excellent agreement with independent time-of-flight (TOF) measurements. Then, the effect of dopants on electron transport was also examined. TOF technique was also used to examine the effects of tertiary-butyl (t-Bu) substitutions on anthracene derivatives (ADN). All ADN compounds were found to be ambipolar. As the degree of t-Bu substitution increases, the carrier mobilities decrease progressively. The reduction of carrier mobilities with increasing t-butylation can be attributed to a decrease in the charge-transfer integral or the wavefunction overlap. In addition, from TOF measurements, two naphthylamine-based hole transporters, namely, N,N'-diphenyl-N,N'-bis(1-naphthyl)(1,1'-biphenyl)-4,4'diamine (NPB) and 4,4',4"-tris(n-(2-naphthyl)-n-phenyl-amino)-triphenylamine (2TNATA) were found to possess electron-transporting (ET) abilities. An organic light-emitting diode that employed NPB as the ET material was demonstrated. The electron conducting mechanism of NPB and 2TNATA in relation to the hopping model will be discussed. Furthermore, the ET property of NPB applied in OLEDs will also be examined. Besides transient EL and TOF techniques, we also use dark-injection space-charge-limited current

  10. Second-order evaluations of orthogonal and symplectic Yangians

    NASA Astrophysics Data System (ADS)

    Karakhanyan, D. R.; Kirschner, R.

    2017-08-01

    Orthogonal or symplectic Yangians are defined by the Yang-Baxter RLL relation involving the fundamental R-matrix with the corresponding so( n) or sp(2 m) symmetry. We investigate the second-order solution conditions, where the expansion of L( u) in u -1 is truncated at the second power, and we derive the relations for the two nontrivial terms in L( u).

  11. A general boundary capability embedded in an orthogonal mesh

    SciTech Connect

    Hewett, D.W.; Yu-Jiuan Chen

    1995-07-01

    The authors describe how they hold onto orthogonal mesh discretization when dealing with curved boundaries. Special difference operators were constructed to approximate numerical zones split by the domain boundary; the operators are particularly simple for this rectangular mesh. The authors demonstrated that this simple numerical approach, termed Dynamic Alternating Direction Implicit, turned out to be considerably more efficient than more complex grid-adaptive algorithms that were tried previously.

  12. Orthogonal Fabry-Pérot sensors for photoacoustic tomography

    NASA Astrophysics Data System (ADS)

    Ellwood, R.; Ogunlade, O.; Zhang, E. Z.; Beard, P. C.; Cox, B. T.

    2016-03-01

    Fabry-Pérot (FP) sensors have been used to produce in-vivo photoacoustic images of exquisite quality. However, for simplicity of construction FP sensors are produced in a planar form. Planar sensors suffer from a limited detection aperture, due to their planarity. We present a novel sensor geometry that allowed a greater field of view by placing a second sensor orthogonal to the first. This captured data from the deeper lying regions of interest and mitigated the limited view.

  13. Improved Efficient, Nearly Orthogonal, Nearly Balanced Mixed Designs

    DTIC Science & Technology

    2011-12-01

    been widely used for computational experiments ( Sacks et al. 1989). They tend to have good space-filling and orthogonality behavior if n p, but when n...Fisher, R. A. 2000. Statistical methods for research workers. Edinburgh, Scotland: Oliver and Boyd. Hedayat, A. S., N. J. Sloane, and J. Stufken. 1999...methods. 2nd ed. Hoboken, New Jersey: Wiley. Sacks , J., W. J. Welch, T. J. Mitchell, and H. P. Wynn. 1989. Design and analysis of computer experiments

  14. Orthogonal mapping: A computer program for quantifying shape differences

    USGS Publications Warehouse

    Huffman, T.; Christopher, R.A.; Hazel, J.E.

    1978-01-01

    Quantitative differences in the shape of two or more objects can be obtained by Orthogonal Mapping provided coincidental or analogous points can be identified on each object. The least-squares difference between each set of analogous points is determined by use of a projective transformation of a set of measured points which involves the rotation, translocation, and scaling of these points relative to a set of fixed points. ?? 1978.

  15. Using Non-Orthogonal Iris Images for Iris Recognition

    DTIC Science & Technology

    2006-05-05

    Figure 4. Rectangular-to-polar coordinate transformation. glare and eyelashes are then accounted for by determining if any...Coordinate Transformation Boundary of pupil/iris Lower eyelid & eyelashes Center of pupil Upper eyelid & eyelashes glare Image in polar coordinates 130...are not hidden by glare, eyelids, and eyelashes . In the case of non-orthogonal iris images, the pupillary and limbic boundaries are now elliptical

  16. Quantification in MALDI-TOF mass spectrometry of modified polymers.

    PubMed

    Walterová, Zuzana; Horský, Jiří

    2011-05-05

    MALDI-TOF mass spectrometry quantification is hampered by the poor reproducibility of the signal intensity and by molecular-mass and compositional discrimination. The addition of a suitable compound as an internal standard increases reproducibility and allows a calibration curve to be constructed. The concept was also verified with synthetic polymers but no instructions for practical implementation were given [H. Chen, M. He, J. Pei, H. He, Anal. Chem. 75 (2003) 6531-6535.], even though synthetic polymers are generally non-uniform with respect to molecular mass and composition and access to the polymer of the same molecular mass distribution and composition as that of the quantified one is thus the exception rather than rule. On the other hand, relative quantification of polymers e.g., the content of the precursor polymer in a batch of a modified polymer, is usually sought. In this particular case, the pure precursor is usually available and the modified polymer can serve as an internal standard. However, the calibration curve still cannot be constructed and the use of the internal standard has to be combined with the method of standard addition in which the precursor polymer is added directly to the analyzed sample. The experiments with simulated modified polymers, mixtures of poly(ethylene glycol) (PEG) and poly(ethylene glycol) monomethyl ether (MPEG) of similar molecular-mass distribution, revealed a power dependence of the PEG/MPEG signal-intensity ratio (MS ratio) on the PEG/MPEG concentrations ratio in the mixture (gravimetric ratio). The result was obtained using standard procedures and instrumentation, which means that the basic assumption of the standard-addition method, i.e., the proportionality of the MS and gravimetric ratios, generally cannot be taken for granted. Therefore, the multi-point combined internal-standard standard-addition method was developed and experimentally verified for the quantification of the precursor in modified polymers. In this

  17. The Sedimentation of Particles under Orthogonal Shear in Viscoelastic Fluids

    NASA Astrophysics Data System (ADS)

    Murch, William L.; Krishnan, Sreenath; Shaqfeh, Eric S. G.

    2016-11-01

    Many engineering applications, including oil and gas recovery, require the suspension of particles in viscoelastic fluids during fluid transport and processing. A topic of specific importance involves such particle suspensions experiencing an applied shear flow in a direction perpendicular to gravity (referred to as orthogonal shear). Previously, it has been shown that particle sedimentation coupled with an orthogonal shear flow can reduce the particle settling rate in elastic fluids. The underlying mechanism of this enhanced coupling drag is not fully understood, particularly at finite Weissenberg numbers. This talk examines the role of fluid elasticity on a single, non-Brownian, rigid sphere settling in orthogonal shear using experiments and numerical simulations. New experiments were performed in a Taylor-Couette flow cell using Boger fluids to study the coupling drag as a function of the shear and sedimentation Weissenberg numbers as well as particle confinement. The elastic effect was also studied with fully 3D simulations of flow past a rigid sphere, using the FENE-P constitutive model to describe the polymeric fluid rheology. These simulations show good agreement with the experiments and allow for further insight into the mechanism of elasticity-enhanced drag. This material is based upon work supported by the National Science Foundation Graduate Research Fellowship.

  18. Parallel and orthogonal stimulus in ultradiluted neural networks.

    PubMed

    Sobral, G A; Vieira, V M; Lyra, M L; da Silva, C R

    2006-10-01

    Extending a model due to Derrida, Gardner, and Zippelius, we have studied the recognition ability of an extreme and asymmetrically diluted version of the Hopfield model for associative memory by including the effect of a stimulus in the dynamics of the system. We obtain exact results for the dynamic evolution of the average network superposition. The stimulus field was considered as proportional to the overlapping of the state of the system with a particular stimulated pattern. Two situations were analyzed, namely, the external stimulus acting on the initialization pattern (parallel stimulus) and the external stimulus acting on a pattern orthogonal to the initialization one (orthogonal stimulus). In both cases, we obtained the complete phase diagram in the parameter space composed of the stimulus field, thermal noise, and network capacity. Our results show that the system improves its recognition ability for parallel stimulus. For orthogonal stimulus two recognition phases emerge with the system locking at the initialization or stimulated pattern. We confront our analytical results with numerical simulations for the noiseless case T = 0.

  19. Animation of orthogonal texture patterns for vector field visualization.

    PubMed

    Bachthaler, Sven; Weiskopf, Daniel

    2008-01-01

    This paper introduces orthogonal vector field visualization on 2D manifolds: a representation by lines that are perpendicular to the input vector field. Line patterns are generated by line integral convolution (LIC). This visualization is combined with animation based on motion along the vector field. This decoupling of the line direction from the direction of animation allows us to choose the spatial frequencies along the direction of motion independently from the length scales along the LIC line patterns. Vision research indicates that local motion detectors are tuned to certain spatial frequencies of textures, and the above decoupling enables us to generate spatial frequencies optimized for motion perception. Furthermore, we introduce a combined visualization that employs orthogonal LIC patterns together with conventional, tangential streamline LIC patterns in order to benefit from the advantages of these two visualization approaches. In addition, a filtering process is described to achieve a consistent and temporally coherent animation of orthogonal vector field visualization. Different filter kernels and filter methods are compared and discussed in terms of visualization quality and speed. We present respective visualization algorithms for 2D planar vector fields and tangential vector fields on curved surfaces, and demonstrate that those algorithms lend themselves to efficient and interactive GPU implementations.

  20. Modular and Orthogonal Synthesis of Hybrid Polymers and Networks

    PubMed Central

    Liu, Shuang; Dicker, Kevin T.; Jia, Xinqiao

    2015-01-01

    Biomaterials scientists strive to develop polymeric materials with distinct chemical make-up, complex molecular architectures, robust mechanical properties and defined biological functions by drawing inspirations from biological systems. Salient features of biological designs include (1) repetitive presentation of basic motifs; and (2) efficient integration of diverse building blocks. Thus, an appealing approach to biomaterials synthesis is to combine synthetic and natural building blocks in a modular fashion employing novel chemical methods. Over the past decade, orthogonal chemistries have become powerful enabling tools for the modular synthesis of advanced biomaterials. These reactions require building blocks with complementary functionalities, occur under mild conditions in the presence of biological molecules and living cells and proceed with high yield and exceptional selectivity. These chemistries have facilitated the construction of complex polymers and networks in a step-growth fashion, allowing facile modulation of materials properties by simple variations of the building blocks. In this review, we first summarize features of several types of orthogonal chemistries. We then discuss recent progress in the synthesis of step growth linear polymers, dendrimers and networks that find application in drug delivery, 3D cell culture and tissue engineering. Overall, orthogonal reactions and modulular synthesis have not only minimized the steps needed for the desired chemical transformations but also maximized the diversity and functionality of the final products. The modular nature of the design, combined with the potential synergistic effect of the hybrid system, will likely result in novel hydrogel matrices with robust structures and defined functions. PMID:25572255

  1. Regression Analysis of Correlated Ordinal Data Using Orthogonalized Residuals

    PubMed Central

    Perin, J.; Preisser, J. S.; Phillips, C.; Qaqish, B.

    2015-01-01

    Summary Semi-parametric regression models for the joint estimation of marginal mean and within-cluster pairwise association parameters are used in a variety of settings for population-averaged modeling of multivariate categorical outcomes. Recently, a formulation of alternating logistic regressions based on orthogonalized, marginal residuals has been introduced for correlated binary data. Unlike the original procedure based on conditional residuals, its covariance estimator is invariant to the ordering of observations within clusters. In this article, the orthogonalized residuals method is extended to model correlated ordinal data with a global odds ratio, and shown in a simulation study to be more eficient and less biased with regards to estimating within-cluster association parameters than an existing extension to ordinal data of alternating logistic regressions based on conditional residuals. Orthogonalized residuals are used to estimate a model for three correlated ordinal outcomes measured repeatedly in a longitudinal clinical trial of an intervention to improve recovery of patients’ perception of altered sensation following jaw surgery. PMID:25134789

  2. Regression analysis of correlated ordinal data using orthogonalized residuals.

    PubMed

    Perin, J; Preisser, J S; Phillips, C; Qaqish, B

    2014-12-01

    Semi-parametric regression models for the joint estimation of marginal mean and within-cluster pairwise association parameters are used in a variety of settings for population-averaged modeling of multivariate categorical outcomes. Recently, a formulation of alternating logistic regressions based on orthogonalized, marginal residuals has been introduced for correlated binary data. Unlike the original procedure based on conditional residuals, its covariance estimator is invariant to the ordering of observations within clusters. In this article, the orthogonalized residuals method is extended to model correlated ordinal data with a global odds ratio, and shown in a simulation study to be more efficient and less biased with regards to estimating within-cluster association parameters than an existing extension to ordinal data of alternating logistic regressions based on conditional residuals. Orthogonalized residuals are used to estimate a model for three correlated ordinal outcomes measured repeatedly in a longitudinal clinical trial of an intervention to improve recovery of patients' perception of altered sensation following jaw surgery. © 2014, The International Biometric Society.

  3. Minimal parameter solution of the orthogonal matrix differential equation

    NASA Technical Reports Server (NTRS)

    Bar-Itzhack, Itzhack Y.; Markley, F. Landis

    1988-01-01

    As demonstrated in this work, all orthogonal matrices solve a first order differential equation. The straightforward solution of this equation requires n sup 2 integrations to obtain the element of the nth order matrix. There are, however, only n(n-1)/2 independent parameters which determine an orthogonal matrix. The questions of choosing them, finding their differential equation and expressing the orthogonal matrix in terms of these parameters are considered. Several possibilities which are based on attitude determination in three dimensions are examined. It is shown that not all 3-D methods have useful extensions to higher dimensions. It is also shown why the rate of change of the matrix elements, which are the elements of the angular rate vector in 3-D, are the elements of a tensor of the second rank (dyadic) in spaces other than three dimensional. It is proven that the 3-D Gibbs vector (or Cayley Parameters) are extendable to other dimensions. An algorithm is developed employing the resulting parameters, which are termed Extended Rodrigues Parameters, and numerical results are presented of the application of the algorithm to a fourth order matrix.

  4. Counting vectors for Orthogonal Fractional Factorial Design generation

    NASA Astrophysics Data System (ADS)

    Fontana, Roberto

    2011-11-01

    Generation of orthogonal fractional factorial designs (OFFDs) is an important and extensively studied subject in applied statistics. In this paper we present a methodology based on counting vectors and a methodology based on polynomial counting functions and strata,[1, 2, 3]. Both methodologies allow us to represent the OFFDs that satisfy a given set of constraints, expressed in terms of orthogonality between simple and interaction effects, as the positive integer solutions Y of a homogeneous system AY = 0 of linear equations. We show how to use this system AY = 0 • to compute, for smaller cases, a minimal set of generators of all the OFFDs (Hilbert basis); • to obtain, for larger cases, a sample of OFFDs. Finally we describe a method to find minimum size OFFDs. We set up an optimisation problem where the cost function to be minimized was the size of the OFFD and the constraints were represented by the system AY = 0. Then we searched for a solution using standard integer programming techniques. It is worth noting that the methodology does not put any restriction on the number of levels of each factor and so it can be applied to a very wide range of designs, including mixed orthogonal arrays.

  5. Minimal parameter solution of the orthogonal matrix differential equation

    NASA Technical Reports Server (NTRS)

    Bar-Itzhack, Itzhack Y.; Markley, F. Landis

    1990-01-01

    As demonstrated in this work, all orthogonal matrices solve a first order differential equation. The straightforward solution of this equation requires n sup 2 integrations to obtain the element of the nth order matrix. There are, however, only n(n-1)/2 independent parameters which determine an orthogonal matrix. The questions of choosing them, finding their differential equation and expressing the orthogonal matrix in terms of these parameters are considered. Several possibilities which are based on attitude determination in three dimensions are examined. It is shown that not all 3-D methods have useful extensions to higher dimensions. It is also shown why the rate of change of the matrix elements, which are the elements of the angular rate vector in 3-D, are the elements of a tensor of the second rank (dyadic) in spaces other than three dimensional. It is proven that the 3-D Gibbs vector (or Cayley Parameters) are extendable to other dimensions. An algorithm is developed emplying the resulting parameters, which are termed Extended Rodrigues Parameters, and numerical results are presented of the application of the algorithm to a fourth order matrix.

  6. Parallel and orthogonal stimulus in ultradiluted neural networks

    NASA Astrophysics Data System (ADS)

    Sobral, G. A., Jr.; Vieira, V. M.; Lyra, M. L.; da Silva, C. R.

    2006-10-01

    Extending a model due to Derrida, Gardner, and Zippelius, we have studied the recognition ability of an extreme and asymmetrically diluted version of the Hopfield model for associative memory by including the effect of a stimulus in the dynamics of the system. We obtain exact results for the dynamic evolution of the average network superposition. The stimulus field was considered as proportional to the overlapping of the state of the system with a particular stimulated pattern. Two situations were analyzed, namely, the external stimulus acting on the initialization pattern (parallel stimulus) and the external stimulus acting on a pattern orthogonal to the initialization one (orthogonal stimulus). In both cases, we obtained the complete phase diagram in the parameter space composed of the stimulus field, thermal noise, and network capacity. Our results show that the system improves its recognition ability for parallel stimulus. For orthogonal stimulus two recognition phases emerge with the system locking at the initialization or stimulated pattern. We confront our analytical results with numerical simulations for the noiseless case T=0 .

  7. Orthogonal design for scale invariant feature transform optimization

    NASA Astrophysics Data System (ADS)

    Ding, Xintao; Luo, Yonglong; Yi, Yunyun; Jie, Biao; Wang, Taochun; Bian, Weixin

    2016-09-01

    To improve object recognition capabilities in applications, we used orthogonal design (OD) to choose a group of optimal parameters in the parameter space of scale invariant feature transform (SIFT). In the case of global optimization (GOP) and local optimization (LOP) objectives, our aim is to show the operation of OD on the SIFT method. The GOP aims to increase the number of correctly detected true matches (NoCDTM) and the ratio of NoCDTM to all matches. In contrast, the LOP mainly aims to increase the performance of recall-precision. In detail, we first abstracted the SIFT method to a 9-way fixed-effect model with an interaction. Second, we designed a mixed orthogonal array, MA(64,23420,2), and its header table to optimize the SIFT parameters. Finally, two groups of parameters were obtained for GOP and LOP after orthogonal experiments and statistical analyses were implemented. Our experiments on four groups of data demonstrate that compared with the state-of-the-art methods, GOP can access more correct matches and is more effective against object recognition. In addition, LOP is favorable in terms of the recall-precision.

  8. Orthogonal dispersive spectral-domain optical coherence tomography.

    PubMed

    Bao, Wen; Ding, Zhihua; Li, Peng; Chen, Zhiyan; Shen, Yi; Wang, Chuan

    2014-04-21

    Ultrahigh depth range spectral domain optical coherence tomography (SDOCT) can be realized based on the orthogonal dispersive spectrometer consisted by a high spectral resolution virtually-imaged phased array (VIPA) and a low spectral resolution grating. However, two critical issues result in the challenge of obtaining desirable one-dimensional (1-D) spectra from the recorded two-dimensional (2-D) orthogonal spectra for high-quality OD-SDOCT imaging. One is the wavenumber mapping errors and the other is the periodic intensity modulations. The paper proposes a method for desirable reconstruction of 1-D spectra from the recorded 2-D orthogonal spectra. A sample etalon with identical parameters to the dispersive VIPA is used to determine the free spectrum range (FSR) of the VIPA, and spectral phases from two reflecting mirrors are further applied for broadband wavenumber calibration. The cascading of column spectra are performed from interval of four lines of column spectra, and four records of cascaded 1-D spectra are obtained and then averaged to alleviate the periodic intensity modulations. Broadband 1-D spectra are thus reconstructed with an ultrahigh spectral resolution. To demonstrate the feasibility of the proposed method, three typical samples are imaged by the OD-SDOCT system.

  9. Multilayer block copolymer meshes by orthogonal self-assembly

    PubMed Central

    Tavakkoli K. G., Amir; Nicaise, Samuel M.; Gadelrab, Karim R.; Alexander-Katz, Alfredo; Ross, Caroline A.; Berggren, Karl K.

    2016-01-01

    Continued scaling-down of lithographic-pattern feature sizes has brought templated self-assembly of block copolymers (BCPs) into the forefront of nanofabrication research. Technologies now exist that facilitate significant control over otherwise unorganized assembly of BCP microdomains to form both long-range and locally complex monolayer patterns. In contrast, the extension of this control into multilayers or 3D structures of BCP microdomains remains limited, despite the possible technological applications in next-generation devices. Here, we develop and analyse an orthogonal self-assembly method in which multiple layers of distinct-molecular-weight BCPs naturally produce nanomesh structures of cylindrical microdomains without requiring layer-by-layer alignment or high-resolution lithographic templating. The mechanisms for orthogonal self-assembly are investigated with both experiment and simulation, and we determine that the control over height and chemical preference of templates are critical process parameters. The method is employed to produce nanomeshes with the shapes of circles and Y-intersections, and is extended to produce three layers of orthogonally oriented cylinders. PMID:26796218

  10. Modular and orthogonal synthesis of hybrid polymers and networks.

    PubMed

    Liu, Shuang; Dicker, Kevin T; Jia, Xinqiao

    2015-03-28

    Biomaterials scientists strive to develop polymeric materials with distinct chemical make-up, complex molecular architectures, robust mechanical properties and defined biological functions by drawing inspirations from biological systems. Salient features of biological designs include (1) repetitive presentation of basic motifs; and (2) efficient integration of diverse building blocks. Thus, an appealing approach to biomaterials synthesis is to combine synthetic and natural building blocks in a modular fashion employing novel chemical methods. Over the past decade, orthogonal chemistries have become powerful enabling tools for the modular synthesis of advanced biomaterials. These reactions require building blocks with complementary functionalities, occur under mild conditions in the presence of biological molecules and living cells and proceed with high yield and exceptional selectivity. These chemistries have facilitated the construction of complex polymers and networks in a step-growth fashion, allowing facile modulation of materials properties by simple variations of the building blocks. In this review, we first summarize features of several types of orthogonal chemistries. We then discuss recent progress in the synthesis of step growth linear polymers, dendrimers and networks that find application in drug delivery, 3D cell culture and tissue engineering. Overall, orthogonal reactions and modulular synthesis have not only minimized the steps needed for the desired chemical transformations but also maximized the diversity and functionality of the final products. The modular nature of the design, combined with the potential synergistic effect of the hybrid system, will likely result in novel hydrogel matrices with robust structures and defined functions.

  11. Limited-memory adaptive snapshot selection for proper orthogonal decomposition

    SciTech Connect

    Oxberry, Geoffrey M.; Kostova-Vassilevska, Tanya; Arrighi, Bill; Chand, Kyle

    2015-04-02

    Reduced order models are useful for accelerating simulations in many-query contexts, such as optimization, uncertainty quantification, and sensitivity analysis. However, offline training of reduced order models can have prohibitively expensive memory and floating-point operation costs in high-performance computing applications, where memory per core is limited. To overcome this limitation for proper orthogonal decomposition, we propose a novel adaptive selection method for snapshots in time that limits offline training costs by selecting snapshots according an error control mechanism similar to that found in adaptive time-stepping ordinary differential equation solvers. The error estimator used in this work is related to theory bounding the approximation error in time of proper orthogonal decomposition-based reduced order models, and memory usage is minimized by computing the singular value decomposition using a single-pass incremental algorithm. Results for a viscous Burgers’ test problem demonstrate convergence in the limit as the algorithm error tolerances go to zero; in this limit, the full order model is recovered to within discretization error. The resulting method can be used on supercomputers to generate proper orthogonal decomposition-based reduced order models, or as a subroutine within hyperreduction algorithms that require taking snapshots in time, or within greedy algorithms for sampling parameter space.

  12. Beam Injection into RHIC

    NASA Astrophysics Data System (ADS)

    Fischer, W.; Hahn, H.; Mackay, W. W.; Tsoupas, N.

    1997-05-01

    During the RHIC sextant test in January 1997 beam was injected into a sixth of one of the rings for the first time. We describe the injection zone and its bottlenecks, the application program to steer the beam and the injection kickers. We report on the commissioning of the injection systems and on measurements of the kickers.

  13. TOF-SIMS analysis of magnetic materials in chum salmon head

    NASA Astrophysics Data System (ADS)

    Yano, Akira; Aoyagi, Satoka

    2008-12-01

    A piece of tissue extracted from a chum salmon Oncorhynchus keta head was measured with time-of-flight secondary ion mass spectrometry (TOF-SIMS) in order to evaluate the distribution and composition of magnetic materials in the tissue, which may concern with geomagnetic navigation of long-distance migrating salmon. Several depositions of iron compounds were detected in the tissue by TOF-SIMS analysis. Comparing with total ion images providing a topological tissue structure, specific distribution of iron ion in the tissue was clearly shown. Higher magnification TOF-SIMS analysis revealed the existence of the aggregations of iron particles. Iron oxide clusters comprising many submicron particles were also detected in the tissue using scanning electron microscopy and X-ray analysis, suggesting the common existence of submicron-scale iron oxides in salmon heads. These results suggest that TOF-SIMS analysis is a valid method to clarify detailed structures and chemical properties of candidate magnetoreceptors in fish heads.

  14. Use of MALDI-TOF MS for Identification of Nontuberculous Mycobacterium Species Isolated from Clinical Specimens

    PubMed Central

    Mediavilla-Gradolph, María Concepción; De Toro-Peinado, Inmaculada; Bermúdez-Ruiz, María Pilar; García-Martínez, María de los Ángeles; Ortega-Torres, María; Montiel Quezel-Guerraz, Natalia; Palop-Borrás, Begoña

    2015-01-01

    The aim of this study was to compare the results obtained for identification by MALDI-TOF of nontuberculous mycobacteria (NTM) isolated in clinical samples with those obtained by GenoType Mycobacterium CM/AS (common mycobacteria/additional species). A total of 66 Mycobacterium isolates from various clinical specimens (mainly respiratory) were tested in this study. They were identified using MALDI-TOF Bruker from strains isolated in Lowenstein, following the recommended protocol of heat inactivation and extraction, and were simultaneously analyzed through hybridization by GenoType Mycobacterium from liquid culture MGIT. Our results showed that identification by MALDI-TOF was correct in 98.4% (65/66) of NTM isolated in our clinical practice (M. avium, M. intracellulare, M. abscessus, M. chelonae, M. fortuitum, M. mucogenicum, M. kansasii, and M. scrofulaceum). MALDI-TOF was found to be an accurate, rapid, and cost-effective system for identification of mycobacteria species. PMID:26106617

  15. Identification of microorganisms grown on chromogenic media by MALDI-TOF MS.

    PubMed

    Lüthje, Petra; Pranada, Arthur B; Carruthers-Lay, Duncan; Desjardins, Marc; Gaillot, Olivier; Wareham, David; Ciesielczuk, Holly; Özenci, Volkan

    2017-05-01

    Matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) and chromogenic media are widely used in clinical microbiology laboratories to facilitate the rapid selection and identification of pathogens. The aim of this study was to evaluate whether usage of chromogenic media limits the diagnostic performance of MALDI-TOF MS for microbial identification. A total of 386 microorganisms collected and analyzed at five laboratories were included. Isolates were cultured on relevant chromogenic media and non-selective agar plates in parallel and identified using the Bruker MALDI-TOF MS. Among the tested isolates, no misidentification was recorded and there was no medium-related difference in the identification level. However, score values were overall slightly but significantly lower for isolates grown on chromogenic media. In conclusion, the use of chromogenic culture media tested here had no relevant impact on MALDI-TOF MS performance for diagnostic purposes.

  16. MALDI-TOF MS meets WGS in a VRE outbreak investigation.

    PubMed

    Schlebusch, S; Price, G R; Gallagher, R L; Horton-Szar, V; Elbourne, L D H; Griffin, P; Venter, D J; Jensen, S O; Van Hal, S J

    2017-03-01

    The use of MALDI-TOF MS (matrix-assisted laser desorption/ ionization-time of flight mass spectrometry) and WGS (whole genome sequencing) has been described for identification and strain relatedness determination. We describe the complementary use of MALDI-TOF MS and WGS in a VRE (vancomycin-resistant enterococci) outbreak investigation, and discuss some of the challenges with defining strain similarity across these two platforms. Although both assays indicated multiple clusters involved in the outbreak of vancomycin resistant Enterococcus faecium isolates from positive blood cultures of four haematology-oncology patients, the small cohort and discrepancies between findings indicate the limitations of MALDI-TOF MS and the cautious interpretation of MALDI-TOF MS dendrograms during outbreaks. For definitive determination of the evolutionary distance between isolates, WGS can be used.

  17. [Discrimination of plasticizers and screening of phthalates in polyvinyl chloride using DART-TOF/MS].

    PubMed

    Abe, Yutaka; Yamaguchi, Miku; Mutsuga, Motoh; Hirahara, Yoshichika; Kawamura, Maiko; Kikura-Hanajiri, Ruri; Goda, Yukihiro; Kawamura, Yoko

    2010-01-01

    A technique using a direct analysis in real time (DART) ion source coupled with time of flight/mass spectrometry (TOF/MS) was developed to discriminate plasticizers and to screen phthalates in polyvinyl chloride (PVC). In DART-TOF/MS analysis of 40 plasticizers, the protonated molecular ion, [M+H](+), was detected for most plasticizers, and the molecular weight could be easily predicted. In the analysis of PVC sheets and toys, mass spectra of plasticizers were successfully detected, and accordingly, plasticizers in PVC were easily discriminated. PVC with a phthalates content in excess of 0.1% could be screened accurately according to the DART-TOF/MS ion intensity of phthalates corresponding to the limit of detection or a suitable criterion value. DART-TOF/MS analysis is a simple and rapid technique that is suitable for the discrimination of plasticizers and for screening of phthalates in PVC.

  18. MALDI-TOF mass spectrometry in the clinical mycology laboratory: identification of fungi and beyond.

    PubMed

    Posteraro, Brunella; De Carolis, Elena; Vella, Antonietta; Sanguinetti, Maurizio

    2013-04-01

    MALDI-TOF mass spectrometry (MS) is becoming essential in most clinical microbiology laboratories throughout the world. Its successful use is mainly attributable to the low operational costs, the universality and flexibility of detection, as well as the specificity and speed of analysis. Based on characteristic protein spectra obtained from intact cells - by means of simple, rapid and reproducible preanalytical and analytical protocols - MALDI-TOF MS allows a highly discriminatory identification of yeasts and filamentous fungi starting from colonies. Whenever used early, direct identification of yeasts from positive blood cultures has the potential to greatly shorten turnaround times and to improve laboratory diagnosis of fungemia. More recently, but still at an infancy stage, MALDI-TOF MS is used to perform strain typing and to determine antifungal drug susceptibility. In this article, the authors discuss how the MALDI-TOF MS technology is destined to become a powerful tool for routine mycological diagnostics.

  19. Toward an In Situ Organic and Atomic Microprobe with Laser TOF-MS

    NASA Technical Reports Server (NTRS)

    Brinckerhoff, W. B.; Cornish, T. J.; McEntire, R. W.; Cheng, A. F.; Benson, R. C.

    2000-01-01

    We present details of a new miniature laser time-of-flight mass spectrometer (TOF-MS) with improved resolution and sensitivity, for in situ analysis of elemental, isotopic, and organic/molecular composition.

  20. MALDI-TOF MS as evolving cancer diagnostic tool: a review.

    PubMed

    Rodrigo, Miguel Angel Merlos; Zitka, Ondrej; Krizkova, Sona; Moulick, Amitava; Adam, Vojtech; Kizek, Rene

    2014-07-01

    Recent developments in mass spectrometry have introduced clinical proteomics to the forefront of diseases diagnosis, offering reliable, robust and efficient analytical method for biomarker discovery and monitoring. MALDI-TOF is a powerful tool for surveying proteins and peptides comprising the realm for clinical analysis. MALDI-TOF has the potential to revolutionize cancer diagnostics by facilitating biomarker discovery, enabling tissue imaging and quantifying biomarker levels. Healthy (control) and cancerous tissues can be analyzed on the basis of mass spectrometry (MALDI-TOF) imaging to identify cancer-specific changes that may prove to be clinically useful. We review MALDI-TOF profiling techniques as tools for detection of cancer biomarkers in various cancers. We mainly discuss recent advances including period from 2011 to 2013. Copyright © 2014 Elsevier B.V. All rights reserved.